locus-tag class description NI17_000005 PF03992 Antibiotic biosynthesis monooxygenase NI17_000010 PF00553 Cellulose binding domain NI17_000010 PF00041 Fibronectin type III domain NI17_000010 PF01341 Glycosyl hydrolases family 6 NI17_000015 PF01557 Fumarylacetoacetate (FAA) hydrolase family NI17_000020 PF04235 Protein of unknown function (DUF418) NI17_000025 PF00392 Bacterial regulatory proteins, gntR family NI17_000030 PF00749 tRNA synthetases class I (E and Q), catalytic domain NI17_000050 PF07995 Glucose / Sorbosone dehydrogenase NI17_000055 PF09339 IclR helix-turn-helix domain NI17_000055 PF01614 Bacterial transcriptional regulator NI17_000060 PF00330 Aconitase family (aconitate hydratase) NI17_000065 PF00694 Aconitase C-terminal domain NI17_000075 PF00216 Bacterial DNA-binding protein NI17_000080 PF01983 Guanylyl transferase CofC like NI17_000090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NI17_000090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NI17_000095 PF01053 Cys/Met metabolism PLP-dependent enzyme NI17_000100 PF01820 D-ala D-ala ligase N-terminus NI17_000100 PF07478 D-ala D-ala ligase C-terminus NI17_000110 PF00005 ABC transporter NI17_000110 PF00664 ABC transporter transmembrane region NI17_000115 PF00664 ABC transporter transmembrane region NI17_000115 PF00005 ABC transporter NI17_000120 PF02322 Cytochrome bd terminal oxidase subunit II NI17_000125 PF01654 Cytochrome bd terminal oxidase subunit I NI17_000150 PF00586 AIR synthase related protein, N-terminal domain NI17_000150 PF02769 AIR synthase related protein, C-terminal domain NI17_000160 PF00830 Ribosomal L28 family NI17_000165 PF17191 RecG wedge domain NI17_000165 PF00270 DEAD/DEAH box helicase NI17_000165 PF00271 Helicase conserved C-terminal domain NI17_000175 PF01467 Cytidylyltransferase-like NI17_000180 PF02620 Large ribosomal RNA subunit accumulation protein YceD NI17_000185 PF01783 Ribosomal L32p protein family NI17_000190 PF00035 Double-stranded RNA binding motif NI17_000190 PF14622 Ribonuclease-III-like NI17_000195 PF06827 Zinc finger found in FPG and IleRS NI17_000195 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NI17_000195 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NI17_000200 PF00708 Acylphosphatase NI17_000210 PF06470 SMC proteins Flexible Hinge Domain NI17_000210 PF02463 RecF/RecN/SMC N terminal domain NI17_000215 PF01497 Periplasmic binding protein NI17_000220 PF01032 FecCD transport family NI17_000225 PF02881 SRP54-type protein, helical bundle domain NI17_000225 PF00448 SRP54-type protein, GTPase domain NI17_000240 PF00005 ABC transporter NI17_000240 PF13732 Domain of unknown function (DUF4162) NI17_000245 PF00909 Ammonium Transporter Family NI17_000255 PF00448 SRP54-type protein, GTPase domain NI17_000255 PF02881 SRP54-type protein, helical bundle domain NI17_000255 PF02978 Signal peptide binding domain NI17_000260 PF00886 Ribosomal protein S16 NI17_000270 PF05239 PRC-barrel domain NI17_000270 PF01782 RimM N-terminal domain NI17_000275 PF01746 tRNA (Guanine-1)-methyltransferase NI17_000280 PF01245 Ribosomal protein L19 NI17_000285 PF10502 Signal peptidase, peptidase S26 NI17_000290 PF10611 Protein of unknown function (DUF2469) NI17_000300 PF02021 Uncharacterised protein family UPF0102 NI17_000305 PF01078 Magnesium chelatase, subunit ChlI NI17_000305 PF13335 Magnesium chelatase, subunit ChlI C-terminal NI17_000310 PF17782 DprA winged helix domain NI17_000310 PF02481 DNA recombination-mediator protein A NI17_000320 PF00589 Phage integrase family NI17_000320 PF02899 Phage integrase, N-terminal SAM-like domain NI17_000330 PF00318 Ribosomal protein S2 NI17_000335 PF00889 Elongation factor TS NI17_000340 PF00696 Amino acid kinase family NI17_000345 PF01765 Ribosome recycling factor NI17_000365 PF04055 Radical SAM superfamily NI17_000375 PF01037 Lrp/AsnC ligand binding domain NI17_000385 PF00202 Aminotransferase class-III NI17_000390 PF00171 Aldehyde dehydrogenase family NI17_000400 PF00795 Carbon-nitrogen hydrolase NI17_000405 PF00202 Aminotransferase class-III NI17_000430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NI17_000430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NI17_000430 PF06827 Zinc finger found in FPG and IleRS NI17_000450 PF00294 pfkB family carbohydrate kinase NI17_000540 PF00271 Helicase conserved C-terminal domain NI17_000540 PF08494 DEAD/H associated NI17_000540 PF00270 DEAD/DEAH box helicase NI17_000630 PF00570 HRDC domain NI17_000630 PF13361 UvrD-like helicase C-terminal domain NI17_000665 PF13195 Protein of unknown function (DUF4011) NI17_000665 PF13087 AAA domain NI17_000665 PF13086 AAA domain NI17_000665 PF13087 AAA domain NI17_000665 PF13086 AAA domain NI17_000665 PF13195 Protein of unknown function (DUF4011) NI17_000670 PF00400 WD domain, G-beta repeat NI17_000670 PF00069 Protein kinase domain NI17_000685 PF01032 FecCD transport family NI17_000690 PF00005 ABC transporter NI17_000695 PF18416 N-acetylglucosamine binding protein domain 2 NI17_000695 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NI17_000700 PF00005 ABC transporter NI17_000700 PF00664 ABC transporter transmembrane region NI17_000710 PF01209 ubiE/COQ5 methyltransferase family NI17_000725 PF03466 LysR substrate binding domain NI17_000725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_000755 PF06969 HemN C-terminal domain NI17_000755 PF04055 Radical SAM superfamily NI17_000765 PF00544 Pectate lyase NI17_000775 PF13488 Glycine zipper NI17_000775 PF00691 OmpA family NI17_000785 PF00171 Aldehyde dehydrogenase family NI17_000810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NI17_000810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NI17_000810 PF13288 DXP reductoisomerase C-terminal domain NI17_000815 PF17820 PDZ domain NI17_000815 PF02163 Peptidase family M50 NI17_000820 PF04551 GcpE protein NI17_000825 PF00561 alpha/beta hydrolase fold NI17_000865 PF00196 Bacterial regulatory proteins, luxR family NI17_000865 PF00196 Bacterial regulatory proteins, luxR family NI17_000870 PF00196 Bacterial regulatory proteins, luxR family NI17_000875 PF03129 Anticodon binding domain NI17_000875 PF13393 Histidyl-tRNA synthetase NI17_000895 PF01043 SecA preprotein cross-linking domain NI17_000895 PF07516 SecA Wing and Scaffold domain NI17_000895 PF07517 SecA DEAD-like domain NI17_000925 PF01654 Cytochrome bd terminal oxidase subunit I NI17_000930 PF00196 Bacterial regulatory proteins, luxR family NI17_000930 PF00072 Response regulator receiver domain NI17_000935 PF07730 Histidine kinase NI17_000955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NI17_000955 PF04073 Aminoacyl-tRNA editing domain NI17_000955 PF03129 Anticodon binding domain NI17_000970 PF02576 RimP N-terminal domain NI17_000970 PF17384 RimP C-terminal SH3 domain NI17_000975 PF13184 NusA-like KH domain NI17_000975 PF08529 NusA N-terminal domain NI17_000985 PF11987 Translation-initiation factor 2 NI17_000985 PF00009 Elongation factor Tu GTP binding domain NI17_000985 PF04760 Translation initiation factor IF-2, N-terminal region NI17_000995 PF02033 Ribosome-binding factor A NI17_001000 PF09142 tRNA Pseudouridine synthase II, C terminal NI17_001000 PF16198 tRNA pseudouridylate synthase B C-terminal domain NI17_001000 PF01509 TruB family pseudouridylate synthase (N terminal domain) NI17_001005 PF06574 FAD synthetase NI17_001005 PF01687 Riboflavin kinase NI17_001010 PF00312 Ribosomal protein S15 NI17_001015 PF00575 S1 RNA binding domain NI17_001015 PF03725 3' exoribonuclease family, domain 2 NI17_001015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NI17_001015 PF00013 KH domain NI17_001015 PF01138 3' exoribonuclease family, domain 1 NI17_001020 PF05193 Peptidase M16 inactive domain NI17_001020 PF00675 Insulinase (Peptidase family M16) NI17_001025 PF05173 Dihydrodipicolinate reductase, C-terminus NI17_001025 PF01113 Dihydrodipicolinate reductase, N-terminus NI17_001030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NI17_001030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NI17_001035 PF01040 UbiA prenyltransferase family NI17_001045 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV NI17_001050 PF00701 Dihydrodipicolinate synthetase family NI17_001055 PF17770 Ribonuclease J C-terminal domain NI17_001055 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NI17_001055 PF12706 Beta-lactamase superfamily domain NI17_001060 PF17854 FtsK alpha domain NI17_001060 PF09397 Ftsk gamma domain NI17_001060 PF01580 FtsK/SpoIIIE family NI17_001070 PF18693 TRAM domain NI17_001070 PF00919 Uncharacterized protein family UPF0004 NI17_001070 PF04055 Radical SAM superfamily NI17_001075 PF01066 CDP-alcohol phosphatidyltransferase NI17_001080 PF02464 Competence-damaged protein NI17_001080 PF18146 Damage-inducible protein CinA KH domain NI17_001080 PF00994 Probable molybdopterin binding domain NI17_001090 PF00210 Ferritin-like domain NI17_001095 PF02082 Transcriptional regulator NI17_001100 PF00583 Acetyltransferase (GNAT) family NI17_001105 PF11248 Protein of unknown function (DUF3046) NI17_001110 PF03161 LAGLIDADG DNA endonuclease family NI17_001110 PF00154 recA bacterial DNA recombination protein NI17_001110 PF00154 recA bacterial DNA recombination protein NI17_001110 PF03161 LAGLIDADG DNA endonuclease family NI17_001115 PF02631 RecX family NI17_001120 PF01966 HD domain NI17_001120 PF12072 Domain of unknown function (DUF3552) NI17_001125 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NI17_001125 PF00326 Prolyl oligopeptidase family NI17_001130 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001135 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001140 PF00497 Bacterial extracellular solute-binding proteins, family 3 NI17_001145 PF00005 ABC transporter NI17_001150 PF00919 Uncharacterized protein family UPF0004 NI17_001150 PF04055 Radical SAM superfamily NI17_001155 PF12704 MacB-like periplasmic core domain NI17_001155 PF02687 FtsX-like permease family NI17_001155 PF00005 ABC transporter NI17_001185 PF01678 Diaminopimelate epimerase NI17_001190 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NI17_001205 PF01274 Malate synthase NI17_001210 PF16360 GTP-binding GTPase Middle Region NI17_001210 PF13167 GTP-binding GTPase N-terminal NI17_001210 PF01926 50S ribosome-binding GTPase NI17_001215 PF01979 Amidohydrolase family NI17_001245 PF01649 Ribosomal protein S20 NI17_001255 PF06421 GTP-binding protein LepA C-terminus NI17_001255 PF00009 Elongation factor Tu GTP binding domain NI17_001255 PF00679 Elongation factor G C-terminus NI17_001260 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001265 PF14785 Maltose transport system permease protein MalF P2 domain NI17_001265 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001275 PF00128 Alpha amylase, catalytic domain NI17_001280 PF00356 Bacterial regulatory proteins, lacI family NI17_001285 PF03475 3-alpha domain NI17_001285 PF03473 MOSC domain NI17_001290 PF04055 Radical SAM superfamily NI17_001310 PF01628 HrcA protein C terminal domain NI17_001310 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NI17_001315 PF00226 DnaJ domain NI17_001315 PF01556 DnaJ C terminal domain NI17_001315 PF00684 DnaJ central domain NI17_001320 PF04452 RNA methyltransferase NI17_001335 PF01230 HIT domain NI17_001340 PF02562 PhoH-like protein NI17_001345 PF02130 Uncharacterized protein family UPF0054 NI17_001350 PF00571 CBS domain NI17_001350 PF03471 Transporter associated domain NI17_001350 PF01595 Cyclin M transmembrane N-terminal domain NI17_001360 PF07650 KH domain NI17_001360 PF01926 50S ribosome-binding GTPase NI17_001365 PF01614 Bacterial transcriptional regulator NI17_001365 PF09339 IclR helix-turn-helix domain NI17_001385 PF08502 LeuA allosteric (dimerisation) domain NI17_001385 PF00682 HMGL-like NI17_001390 PF00188 Cysteine-rich secretory protein family NI17_001395 PF02565 Recombination protein O C terminal NI17_001395 PF11967 Recombination protein O N terminal NI17_001400 PF01255 Putative undecaprenyl diphosphate synthase NI17_001415 PF01475 Ferric uptake regulator family NI17_001420 PF00950 ABC 3 transport family NI17_001425 PF00005 ABC transporter NI17_001440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NI17_001440 PF03129 Anticodon binding domain NI17_001445 PF03006 Haemolysin-III related NI17_001450 PF00391 PEP-utilising enzyme, mobile domain NI17_001450 PF02896 PEP-utilising enzyme, TIM barrel domain NI17_001450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NI17_001460 PF01966 HD domain NI17_001460 PF13286 Phosphohydrolase-associated domain NI17_001465 PF04616 Glycosyl hydrolases family 43 NI17_001470 PF01807 CHC2 zinc finger NI17_001470 PF08275 DNA primase catalytic core, N-terminal domain NI17_001470 PF13662 Toprim domain NI17_001470 PF08278 DNA primase DnaG DnaB-binding NI17_001470 PF10410 DnaB-helicase binding domain of primase NI17_001475 PF04539 Sigma-70 region 3 NI17_001475 PF00140 Sigma-70 factor, region 1.2 NI17_001475 PF04542 Sigma-70 region 2 NI17_001475 PF04545 Sigma-70, region 4 NI17_001480 PF00553 Cellulose binding domain NI17_001480 PF00704 Glycosyl hydrolases family 18 NI17_001480 PF00041 Fibronectin type III domain NI17_001520 PF00916 Sulfate permease family NI17_001520 PF01740 STAS domain NI17_001525 PF01494 FAD binding domain NI17_001530 PF02627 Carboxymuconolactone decarboxylase family NI17_001535 PF00561 alpha/beta hydrolase fold NI17_001540 PF00561 alpha/beta hydrolase fold NI17_001545 PF10397 Adenylosuccinate lyase C-terminus NI17_001545 PF00206 Lyase NI17_001555 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NI17_001555 PF00775 Dioxygenase NI17_001560 PF00108 Thiolase, N-terminal domain NI17_001560 PF02803 Thiolase, C-terminal domain NI17_001565 PF01144 Coenzyme A transferase NI17_001570 PF01144 Coenzyme A transferase NI17_001575 PF09339 IclR helix-turn-helix domain NI17_001575 PF01614 Bacterial transcriptional regulator NI17_001580 PF01872 RibD C-terminal domain NI17_001590 PF00271 Helicase conserved C-terminal domain NI17_001590 PF00270 DEAD/DEAH box helicase NI17_001590 PF08148 DSHCT (NUC185) domain NI17_001620 PF13419 Haloacid dehalogenase-like hydrolase NI17_001630 PF07690 Major Facilitator Superfamily NI17_001635 PF00296 Luciferase-like monooxygenase NI17_001640 PF04191 Phospholipid methyltransferase NI17_001645 PF01370 NAD dependent epimerase/dehydratase family NI17_001655 PF01047 MarR family NI17_001660 PF00115 Cytochrome C and Quinol oxidase polypeptide I NI17_001665 PF12695 Alpha/beta hydrolase family NI17_001670 PF12695 Alpha/beta hydrolase family NI17_001680 PF08240 Alcohol dehydrogenase GroES-like domain NI17_001680 PF13823 Alcohol dehydrogenase GroES-associated NI17_001680 PF00107 Zinc-binding dehydrogenase NI17_001685 PF05067 Manganese containing catalase NI17_001695 PF04542 Sigma-70 region 2 NI17_001695 PF04539 Sigma-70 region 3 NI17_001695 PF04545 Sigma-70, region 4 NI17_001700 PF00106 short chain dehydrogenase NI17_001735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NI17_001750 PF16861 Carbamoyltransferase C-terminus NI17_001750 PF02543 Carbamoyltransferase N-terminus NI17_001770 PF13439 Glycosyltransferase Family 4 NI17_001770 PF00534 Glycosyl transferases group 1 NI17_001775 PF13580 SIS domain NI17_001780 PF01467 Cytidylyltransferase-like NI17_001780 PF00294 pfkB family carbohydrate kinase NI17_001790 PF01370 NAD dependent epimerase/dehydratase family NI17_001800 PF00535 Glycosyl transferase family 2 NI17_001835 PF02674 Colicin V production protein NI17_001840 PF00150 Cellulase (glycosyl hydrolase family 5) NI17_001840 PF02013 Cellulose or protein binding domain NI17_001845 PF00553 Cellulose binding domain NI17_001845 PF00150 Cellulase (glycosyl hydrolase family 5) NI17_001850 PF00533 BRCA1 C Terminus (BRCT) domain NI17_001850 PF01653 NAD-dependent DNA ligase adenylation domain NI17_001850 PF03120 NAD-dependent DNA ligase OB-fold domain NI17_001850 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NI17_001850 PF12826 Helix-hairpin-helix motif NI17_001875 PF00455 DeoR C terminal sensor domain NI17_001875 PF08220 DeoR-like helix-turn-helix domain NI17_001880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NI17_001885 PF00356 Bacterial regulatory proteins, lacI family NI17_001895 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001900 PF00528 Binding-protein-dependent transport system inner membrane component NI17_001905 PF00005 ABC transporter NI17_001905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_001910 PF00005 ABC transporter NI17_001910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_001935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_001935 PF07730 Histidine kinase NI17_001940 PF00072 Response regulator receiver domain NI17_001940 PF00196 Bacterial regulatory proteins, luxR family NI17_001960 PF00005 ABC transporter NI17_001975 PF01037 Lrp/AsnC ligand binding domain NI17_001980 PF03301 Tryptophan 2,3-dioxygenase NI17_001985 PF00266 Aminotransferase class-V NI17_002010 PF01381 Helix-turn-helix NI17_002015 PF08240 Alcohol dehydrogenase GroES-like domain NI17_002015 PF00107 Zinc-binding dehydrogenase NI17_002020 PF03747 ADP-ribosylglycohydrolase NI17_002040 PF01180 Dihydroorotate dehydrogenase NI17_002050 PF00294 pfkB family carbohydrate kinase NI17_002075 PF00528 Binding-protein-dependent transport system inner membrane component NI17_002080 PF00528 Binding-protein-dependent transport system inner membrane component NI17_002085 PF00232 Glycosyl hydrolase family 1 NI17_002090 PF00356 Bacterial regulatory proteins, lacI family NI17_002100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_002100 PF00512 His Kinase A (phospho-acceptor) domain NI17_002105 PF03259 Roadblock/LC7 domain NI17_002125 PF00571 CBS domain NI17_002135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_002135 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_002135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_002140 PF00289 Biotin carboxylase, N-terminal domain NI17_002140 PF00364 Biotin-requiring enzyme NI17_002140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NI17_002140 PF02785 Biotin carboxylase C-terminal domain NI17_002145 PF01039 Carboxyl transferase domain NI17_002155 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_002165 PF02583 Metal-sensitive transcriptional repressor NI17_002175 PF10944 Protein of unknown function (DUF2630) NI17_002190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NI17_002190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NI17_002195 PF01575 MaoC like domain NI17_002210 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NI17_002210 PF13378 Enolase C-terminal domain-like NI17_002215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NI17_002215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NI17_002220 PF01979 Amidohydrolase family NI17_002225 PF05425 Copper resistance protein D NI17_002225 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NI17_002230 PF00296 Luciferase-like monooxygenase NI17_002245 PF01596 O-methyltransferase NI17_002255 PF00440 Bacterial regulatory proteins, tetR family NI17_002260 PF01494 FAD binding domain NI17_002270 PF00557 Metallopeptidase family M24 NI17_002285 PF16656 Purple acid Phosphatase, N-terminal domain NI17_002285 PF00149 Calcineurin-like phosphoesterase NI17_002290 PF00296 Luciferase-like monooxygenase NI17_002295 PF02548 Ketopantoate hydroxymethyltransferase NI17_002300 PF00120 Glutamine synthetase, catalytic domain NI17_002300 PF03951 Glutamine synthetase, beta-Grasp domain NI17_002305 PF00795 Carbon-nitrogen hydrolase NI17_002305 PF02540 NAD synthase NI17_002315 PF00128 Alpha amylase, catalytic domain NI17_002315 PF02806 Alpha amylase, C-terminal all-beta domain NI17_002315 PF00686 Starch binding domain NI17_002320 PF08335 GlnD PII-uridylyltransferase NI17_002320 PF03710 Glutamate-ammonia ligase adenylyltransferase NI17_002325 PF00893 Small Multidrug Resistance protein NI17_002330 PF03951 Glutamine synthetase, beta-Grasp domain NI17_002330 PF00120 Glutamine synthetase, catalytic domain NI17_002340 PF13829 Domain of unknown function (DUF4191) NI17_002345 PF04055 Radical SAM superfamily NI17_002350 PF03099 Biotin/lipoate A/B protein ligase family NI17_002355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NI17_002355 PF00364 Biotin-requiring enzyme NI17_002355 PF02817 e3 binding domain NI17_002360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NI17_002360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_002365 PF00883 Cytosol aminopeptidase family, catalytic domain NI17_002365 PF02789 Cytosol aminopeptidase family, N-terminal domain NI17_002370 PF02654 Cobalamin-5-phosphate synthase NI17_002375 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NI17_002385 PF13514 AAA domain NI17_002390 PF00149 Calcineurin-like phosphoesterase NI17_002400 PF00248 Aldo/keto reductase family NI17_002420 PF01435 Peptidase family M48 NI17_002430 PF02595 Glycerate kinase family NI17_002435 PF01521 Iron-sulphur cluster biosynthesis NI17_002440 PF00294 pfkB family carbohydrate kinase NI17_002445 PF00163 Ribosomal protein S4/S9 N-terminal domain NI17_002445 PF01479 S4 domain NI17_002450 PF01206 Sulfurtransferase TusA NI17_002460 PF00115 Cytochrome C and Quinol oxidase polypeptide I NI17_002465 PF12270 Cytochrome c oxidase subunit IV NI17_002470 PF03734 L,D-transpeptidase catalytic domain NI17_002470 PF17964 Bacterial Ig domain NI17_002475 PF13631 Cytochrome b(N-terminal)/b6/petB NI17_002480 PF00355 Rieske [2Fe-2S] domain NI17_002485 PF00034 Cytochrome c NI17_002485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NI17_002490 PF00510 Cytochrome c oxidase subunit III NI17_002500 PF02885 Glycosyl transferase family, helical bundle domain NI17_002500 PF00591 Glycosyl transferase family, a/b domain NI17_002515 PF01541 GIY-YIG catalytic domain NI17_002515 PF00929 Exonuclease NI17_002525 PF00877 NlpC/P60 family NI17_002530 PF00877 NlpC/P60 family NI17_002535 PF00501 AMP-binding enzyme NI17_002545 PF00480 ROK family NI17_002560 PF12146 Serine aminopeptidase, S33 NI17_002565 PF01553 Acyltransferase NI17_002570 PF00365 Phosphofructokinase NI17_002575 PF02568 Thiamine biosynthesis protein (ThiI) NI17_002575 PF02926 THUMP domain NI17_002580 PF18152 DAHP synthase ferredoxin-like domain NI17_002580 PF00793 DAHP synthetase I family NI17_002585 PF00174 Oxidoreductase molybdopterin binding domain NI17_002590 PF03793 PASTA domain NI17_002590 PF00069 Protein kinase domain NI17_002595 PF05690 Thiazole biosynthesis protein ThiG NI17_002605 PF01266 FAD dependent oxidoreductase NI17_002605 PF05690 Thiazole biosynthesis protein ThiG NI17_002615 PF02581 Thiamine monophosphate synthase NI17_002635 PF02219 Methylenetetrahydrofolate reductase NI17_002640 PF00348 Polyprenyl synthetase NI17_002655 PF00156 Phosphoribosyl transferase domain NI17_002660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NI17_002660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NI17_002665 PF01979 Amidohydrolase family NI17_002670 PF00117 Glutamine amidotransferase class-I NI17_002670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NI17_002675 PF02142 MGS-like domain NI17_002675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NI17_002675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NI17_002680 PF00175 Oxidoreductase NAD-binding domain NI17_002680 PF00970 Oxidoreductase FAD-binding domain NI17_002680 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NI17_002685 PF01180 Dihydroorotate dehydrogenase NI17_002690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NI17_002700 PF00625 Guanylate kinase NI17_002705 PF01192 RNA polymerase Rpb6 NI17_002710 PF04127 DNA / pantothenate metabolism flavoprotein NI17_002710 PF02441 Flavoprotein NI17_002715 PF00438 S-adenosylmethionine synthetase, N-terminal domain NI17_002715 PF02772 S-adenosylmethionine synthetase, central domain NI17_002715 PF02773 S-adenosylmethionine synthetase, C-terminal domain NI17_002720 PF04235 Protein of unknown function (DUF418) NI17_002725 PF01850 PIN domain NI17_002740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_002740 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_002740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_002745 PF02515 CoA-transferase family III NI17_002765 PF17764 3′ DNA-binding domain (3′BD) NI17_002775 PF00553 Cellulose binding domain NI17_002775 PF01341 Glycosyl hydrolases family 6 NI17_002780 PF02911 Formyl transferase, C-terminal domain NI17_002780 PF00551 Formyl transferase NI17_002785 PF01189 16S rRNA methyltransferase RsmB/F NI17_002785 PF01029 NusB family NI17_002790 PF00834 Ribulose-phosphate 3 epimerase family NI17_002795 PF00677 Lumazine binding domain NI17_002800 PF04973 Nicotinamide mononucleotide transporter NI17_002805 PF00925 GTP cyclohydrolase II NI17_002805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NI17_002810 PF00885 6,7-dimethyl-8-ribityllumazine synthase NI17_002820 PF01263 Aldose 1-epimerase NI17_002825 PF00069 Protein kinase domain NI17_002825 PF03793 PASTA domain NI17_002835 PF04264 YceI-like domain NI17_002855 PF01264 Chorismate synthase NI17_002860 PF01202 Shikimate kinase NI17_002865 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system NI17_002875 PF01761 3-dehydroquinate synthase NI17_002880 PF01132 Elongation factor P (EF-P) OB domain NI17_002880 PF08207 Elongation factor P (EF-P) KOW-like domain NI17_002880 PF09285 Elongation factor P, C-terminal NI17_002885 PF01029 NusB family NI17_002895 PF00817 impB/mucB/samB family NI17_002895 PF11799 impB/mucB/samB family C-terminal domain NI17_002905 PF01841 Transglutaminase-like superfamily NI17_002905 PF11992 Domain of unknown function (DUF3488) NI17_002905 PF13559 Domain of unknown function (DUF4129) NI17_002915 PF17863 AAA lid domain NI17_002915 PF07726 ATPase family associated with various cellular activities (AAA) NI17_002920 PF02381 MraZ protein, putative antitoxin-like NI17_002925 PF01795 MraW methylase family NI17_002935 PF00905 Penicillin binding protein transpeptidase domain NI17_002935 PF03717 Penicillin-binding Protein dimerisation domain NI17_002940 PF02875 Mur ligase family, glutamate ligase domain NI17_002940 PF08245 Mur ligase middle domain NI17_002940 PF01225 Mur ligase family, catalytic domain NI17_002945 PF01225 Mur ligase family, catalytic domain NI17_002945 PF02875 Mur ligase family, glutamate ligase domain NI17_002945 PF08245 Mur ligase middle domain NI17_002950 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NI17_002950 PF00953 Glycosyl transferase family 4 NI17_002955 PF08245 Mur ligase middle domain NI17_002960 PF01098 Cell cycle protein NI17_002965 PF04101 Glycosyltransferase family 28 C-terminal domain NI17_002965 PF03033 Glycosyltransferase family 28 N-terminal domain NI17_002970 PF02875 Mur ligase family, glutamate ligase domain NI17_002970 PF08245 Mur ligase middle domain NI17_002970 PF01225 Mur ligase family, catalytic domain NI17_002975 PF03799 Cell division protein FtsQ NI17_002975 PF08478 POTRA domain, FtsQ-type NI17_002980 PF00091 Tubulin/FtsZ family, GTPase domain NI17_002980 PF12327 FtsZ family, C-terminal domain NI17_002985 PF02578 Multi-copper polyphenol oxidoreductase laccase NI17_002990 PF01168 Alanine racemase, N-terminal domain NI17_002995 PF04472 Cell division protein SepF NI17_003005 PF05103 DivIVA protein NI17_003015 PF00133 tRNA synthetases class I (I, L, M and V) NI17_003015 PF08264 Anticodon-binding domain of tRNA NI17_003025 PF01252 Signal peptidase (SPase) II NI17_003030 PF00849 RNA pseudouridylate synthase NI17_003035 PF00440 Bacterial regulatory proteins, tetR family NI17_003085 PF08401 Domain of unknown function (DUF1738) NI17_003085 PF18818 Metallopeptidase superfamily domain NI17_003085 PF13362 Toprim domain NI17_003090 PF04978 Protein of unknown function (DUF664) NI17_003135 PF13673 Acetyltransferase (GNAT) domain NI17_003145 PF07690 Major Facilitator Superfamily NI17_003155 PF00400 WD domain, G-beta repeat NI17_003155 PF00069 Protein kinase domain NI17_003160 PF00664 ABC transporter transmembrane region NI17_003160 PF00005 ABC transporter NI17_003190 PF03551 Transcriptional regulator PadR-like family NI17_003200 PF04073 Aminoacyl-tRNA editing domain NI17_003205 PF02190 ATP-dependent protease La (LON) substrate-binding domain NI17_003205 PF05362 Lon protease (S16) C-terminal proteolytic domain NI17_003205 PF00004 ATPase family associated with various cellular activities (AAA) NI17_003210 PF00210 Ferritin-like domain NI17_003215 PF00815 Histidinol dehydrogenase NI17_003220 PF00155 Aminotransferase class I and II NI17_003225 PF00475 Imidazoleglycerol-phosphate dehydratase NI17_003235 PF00117 Glutamine amidotransferase class-I NI17_003240 PF00977 Histidine biosynthesis protein NI17_003245 PF00977 Histidine biosynthesis protein NI17_003250 PF00664 ABC transporter transmembrane region NI17_003250 PF00005 ABC transporter NI17_003255 PF00664 ABC transporter transmembrane region NI17_003255 PF00005 ABC transporter NI17_003265 PF01502 Phosphoribosyl-AMP cyclohydrolase NI17_003290 PF00218 Indole-3-glycerol phosphate synthase NI17_003295 PF00291 Pyridoxal-phosphate dependent enzyme NI17_003300 PF00290 Tryptophan synthase alpha chain NI17_003315 PF01790 Prolipoprotein diacylglyceryl transferase NI17_003335 PF00310 Glutamine amidotransferases class-II NI17_003335 PF04898 Glutamate synthase central domain NI17_003335 PF01645 Conserved region in glutamate synthase NI17_003335 PF01493 GXGXG motif NI17_003340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NI17_003340 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_003360 PF01965 DJ-1/PfpI family NI17_003365 PF00224 Pyruvate kinase, barrel domain NI17_003365 PF02887 Pyruvate kinase, alpha/beta domain NI17_003385 PF00072 Response regulator receiver domain NI17_003385 PF03861 ANTAR domain NI17_003390 PF02653 Branched-chain amino acid transport system / permease component NI17_003400 PF00005 ABC transporter NI17_003400 PF12399 Branched-chain amino acid ATP-binding cassette transporter NI17_003405 PF00005 ABC transporter NI17_003410 PF13458 Periplasmic binding protein NI17_003420 PF03061 Thioesterase superfamily NI17_003425 PF01367 5'-3' exonuclease, C-terminal SAM fold NI17_003425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NI17_003425 PF00476 DNA polymerase family A NI17_003430 PF03462 PCRF domain NI17_003430 PF00472 RF-1 domain NI17_003435 PF00575 S1 RNA binding domain NI17_003440 PF01121 Dephospho-CoA kinase NI17_003445 PF00271 Helicase conserved C-terminal domain NI17_003445 PF04851 Type III restriction enzyme, res subunit NI17_003445 PF02151 UvrB/uvrC motif NI17_003445 PF12344 Ultra-violet resistance protein B NI17_003445 PF17757 UvrB interaction domain NI17_003460 PF06418 CTP synthase N-terminus NI17_003460 PF00117 Glutamine amidotransferase class-I NI17_003470 PF00589 Phage integrase family NI17_003470 PF02899 Phage integrase, N-terminal SAM-like domain NI17_003475 PF13614 AAA domain NI17_003485 PF02616 Segregation and condensation protein ScpA NI17_003490 PF04079 Segregation and condensation complex subunit ScpB NI17_003495 PF00849 RNA pseudouridylate synthase NI17_003495 PF01479 S4 domain NI17_003500 PF07736 Chorismate mutase type I NI17_003505 PF02153 Prephenate dehydrogenase NI17_003510 PF02224 Cytidylate kinase NI17_003515 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NI17_003515 PF01926 50S ribosome-binding GTPase NI17_003530 PF00107 Zinc-binding dehydrogenase NI17_003530 PF08240 Alcohol dehydrogenase GroES-like domain NI17_003535 PF01638 HxlR-like helix-turn-helix NI17_003540 PF04463 Protein of unknown function (DUF523) NI17_003545 PF13411 MerR HTH family regulatory protein NI17_003555 PF00107 Zinc-binding dehydrogenase NI17_003555 PF08240 Alcohol dehydrogenase GroES-like domain NI17_003560 PF00528 Binding-protein-dependent transport system inner membrane component NI17_003565 PF00528 Binding-protein-dependent transport system inner membrane component NI17_003575 PF00356 Bacterial regulatory proteins, lacI family NI17_003580 PF00860 Permease family NI17_003585 PF00459 Inositol monophosphatase family NI17_003610 PF01494 FAD binding domain NI17_003615 PF00457 Glycosyl hydrolases family 11 NI17_003620 PF07690 Major Facilitator Superfamily NI17_003630 PF00501 AMP-binding enzyme NI17_003635 PF03364 Polyketide cyclase / dehydrase and lipid transport NI17_003640 PF00535 Glycosyl transferase family 2 NI17_003650 PF00535 Glycosyl transferase family 2 NI17_003655 PF07690 Major Facilitator Superfamily NI17_003665 PF01327 Polypeptide deformylase NI17_003670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NI17_003685 PF04107 Glutamate-cysteine ligase family 2(GCS2) NI17_003720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NI17_003720 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NI17_003735 PF00701 Dihydrodipicolinate synthetase family NI17_003740 PF13378 Enolase C-terminal domain-like NI17_003740 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NI17_003745 PF01266 FAD dependent oxidoreductase NI17_003745 PF00355 Rieske [2Fe-2S] domain NI17_003750 PF00356 Bacterial regulatory proteins, lacI family NI17_003755 PF00701 Dihydrodipicolinate synthetase family NI17_003765 PF04324 BFD-like [2Fe-2S] binding domain NI17_003765 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_003770 PF01266 FAD dependent oxidoreductase NI17_003775 PF01979 Amidohydrolase family NI17_003785 PF02538 Hydantoinase B/oxoprolinase NI17_003790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NI17_003795 PF00528 Binding-protein-dependent transport system inner membrane component NI17_003800 PF12911 N-terminal TM domain of oligopeptide transport permease C NI17_003800 PF00528 Binding-protein-dependent transport system inner membrane component NI17_003805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_003805 PF00005 ABC transporter NI17_003815 PF00449 Urease alpha-subunit, N-terminal domain NI17_003815 PF01979 Amidohydrolase family NI17_003825 PF00356 Bacterial regulatory proteins, lacI family NI17_003840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NI17_003845 PF00171 Aldehyde dehydrogenase family NI17_003850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NI17_003850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NI17_003855 PF00528 Binding-protein-dependent transport system inner membrane component NI17_003860 PF00528 Binding-protein-dependent transport system inner membrane component NI17_003865 PF13416 Bacterial extracellular solute-binding protein NI17_003870 PF01757 Acyltransferase family NI17_003880 PF00561 alpha/beta hydrolase fold NI17_003885 PF00743 Flavin-binding monooxygenase-like NI17_003895 PF00005 ABC transporter NI17_003895 PF00664 ABC transporter transmembrane region NI17_003900 PF00005 ABC transporter NI17_003900 PF13732 Domain of unknown function (DUF4162) NI17_003905 PF01061 ABC-2 type transporter NI17_003910 PF08241 Methyltransferase domain NI17_003915 PF12802 MarR family NI17_003940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NI17_003940 PF00384 Molybdopterin oxidoreductase NI17_003940 PF01568 Molydopterin dinucleotide binding domain NI17_003950 PF00361 Proton-conducting membrane transporter NI17_003950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NI17_003950 PF13244 Domain of unknown function (DUF4040) NI17_003955 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NI17_003960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NI17_003965 PF00361 Proton-conducting membrane transporter NI17_003970 PF03334 Na+/H+ antiporter subunit NI17_003975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_003975 PF00205 Thiamine pyrophosphate enzyme, central domain NI17_003975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_003980 PF13183 4Fe-4S dicluster domain NI17_003980 PF02913 FAD linked oxidases, C-terminal domain NI17_003980 PF01565 FAD binding domain NI17_003985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NI17_003985 PF13378 Enolase C-terminal domain-like NI17_003990 PF00115 Cytochrome C and Quinol oxidase polypeptide I NI17_004000 PF00171 Aldehyde dehydrogenase family NI17_004005 PF13302 Acetyltransferase (GNAT) domain NI17_004010 PF00132 Bacterial transferase hexapeptide (six repeats) NI17_004065 PF00248 Aldo/keto reductase family NI17_004070 PF00571 CBS domain NI17_004070 PF03471 Transporter associated domain NI17_004070 PF01595 Cyclin M transmembrane N-terminal domain NI17_004075 PF03471 Transporter associated domain NI17_004075 PF01595 Cyclin M transmembrane N-terminal domain NI17_004075 PF00571 CBS domain NI17_004080 PF00588 SpoU rRNA Methylase family NI17_004080 PF08032 RNA 2'-O ribose methyltransferase substrate binding NI17_004085 PF05175 Methyltransferase small domain NI17_004095 PF13520 Amino acid permease NI17_004100 PF00293 NUDIX domain NI17_004110 PF13519 von Willebrand factor type A domain NI17_004115 PF01882 Protein of unknown function DUF58 NI17_004120 PF07726 ATPase family associated with various cellular activities (AAA) NI17_004120 PF17863 AAA lid domain NI17_004130 PF00248 Aldo/keto reductase family NI17_004135 PF09423 PhoD-like phosphatase NI17_004135 PF16655 PhoD-like phosphatase, N-terminal domain NI17_004140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NI17_004140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NI17_004150 PF00005 ABC transporter NI17_004150 PF08402 TOBE domain NI17_004160 PF00571 CBS domain NI17_004160 PF01769 Divalent cation transporter NI17_004160 PF03448 MgtE intracellular N domain NI17_004175 PF03328 HpcH/HpaI aldolase/citrate lyase family NI17_004180 PF00106 short chain dehydrogenase NI17_004185 PF00809 Pterin binding enzyme NI17_004210 PF08240 Alcohol dehydrogenase GroES-like domain NI17_004210 PF00107 Zinc-binding dehydrogenase NI17_004210 PF13823 Alcohol dehydrogenase GroES-associated NI17_004215 PF03193 RsgA GTPase NI17_004225 PF18393 MotY N-terminal domain NI17_004225 PF00691 OmpA family NI17_004235 PF00672 HAMP domain NI17_004235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_004235 PF00512 His Kinase A (phospho-acceptor) domain NI17_004240 PF00072 Response regulator receiver domain NI17_004240 PF00486 Transcriptional regulatory protein, C terminal NI17_004255 PF04539 Sigma-70 region 3 NI17_004255 PF04545 Sigma-70, region 4 NI17_004255 PF04542 Sigma-70 region 2 NI17_004260 PF12697 Alpha/beta hydrolase family NI17_004280 PF02146 Sir2 family NI17_004300 PF00805 Pentapeptide repeats (8 copies) NI17_004305 PF03167 Uracil DNA glycosylase superfamily NI17_004310 PF00069 Protein kinase domain NI17_004310 PF03793 PASTA domain NI17_004315 PF03793 PASTA domain NI17_004315 PF00069 Protein kinase domain NI17_004325 PF02308 MgtC family NI17_004330 PF00723 Glycosyl hydrolases family 15 NI17_004340 PF00392 Bacterial regulatory proteins, gntR family NI17_004340 PF00155 Aminotransferase class I and II NI17_004345 PF12146 Serine aminopeptidase, S33 NI17_004350 PF06463 Molybdenum Cofactor Synthesis C NI17_004350 PF04055 Radical SAM superfamily NI17_004360 PF03793 PASTA domain NI17_004360 PF00069 Protein kinase domain NI17_004365 PF00271 Helicase conserved C-terminal domain NI17_004365 PF12137 RNA polymerase recycling family C-terminal NI17_004365 PF18339 RapA N-terminal Tudor like domain 1 NI17_004365 PF18337 RapA N-terminal Tudor like domain NI17_004365 PF00176 SNF2 family N-terminal domain NI17_004370 PF02384 N-6 DNA Methylase NI17_004370 PF12161 HsdM N-terminal domain NI17_004435 PF13344 Haloacid dehalogenase-like hydrolase NI17_004435 PF00293 NUDIX domain NI17_004460 PF06628 Catalase-related immune-responsive NI17_004460 PF00199 Catalase NI17_004460 PF18011 C-terminal domain found in long catalases NI17_004485 PF01139 tRNA-splicing ligase RtcB NI17_004510 PF12804 MobA-like NTP transferase domain NI17_004535 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NI17_004535 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NI17_004540 PF03816 Cell envelope-related transcriptional attenuator domain NI17_004550 PF00005 ABC transporter NI17_004565 PF07729 FCD domain NI17_004565 PF00392 Bacterial regulatory proteins, gntR family NI17_004570 PF07690 Major Facilitator Superfamily NI17_004580 PF00463 Isocitrate lyase family NI17_004590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_004590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_004590 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_004615 PF13411 MerR HTH family regulatory protein NI17_004635 PF00425 chorismate binding enzyme NI17_004635 PF04715 Anthranilate synthase component I, N terminal region NI17_004635 PF00117 Glutamine amidotransferase class-I NI17_004655 PF13722 5TM C-terminal transporter carbon starvation CstA NI17_004655 PF02554 Carbon starvation protein CstA NI17_004665 PF17886 HSP20-like domain found in ArsA NI17_004665 PF02374 Anion-transporting ATPase NI17_004675 PF01066 CDP-alcohol phosphatidyltransferase NI17_004680 PF00483 Nucleotidyl transferase NI17_004685 PF00498 FHA domain NI17_004690 PF02577 Bifunctional nuclease NI17_004695 PF13411 MerR HTH family regulatory protein NI17_004700 PF02347 Glycine cleavage system P-protein NI17_004730 PF01381 Helix-turn-helix NI17_004735 PF04493 Endonuclease V NI17_004745 PF07730 Histidine kinase NI17_004745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_004750 PF00072 Response regulator receiver domain NI17_004750 PF00196 Bacterial regulatory proteins, luxR family NI17_004775 PF04539 Sigma-70 region 3 NI17_004775 PF04542 Sigma-70 region 2 NI17_004775 PF00140 Sigma-70 factor, region 1.2 NI17_004775 PF04545 Sigma-70, region 4 NI17_004780 PF00501 AMP-binding enzyme NI17_004780 PF13193 AMP-binding enzyme C-terminal domain NI17_004785 PF00378 Enoyl-CoA hydratase/isomerase NI17_004790 PF18374 Enolase N-terminal domain-like NI17_004790 PF13378 Enolase C-terminal domain-like NI17_004795 PF16582 Middle domain of thiamine pyrophosphate NI17_004795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_004800 PF00582 Universal stress protein family NI17_004805 PF00425 chorismate binding enzyme NI17_004810 PF02638 Glycosyl hydrolase-like 10 NI17_004825 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_004860 PF03466 LysR substrate binding domain NI17_004860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_004865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_004865 PF03466 LysR substrate binding domain NI17_004875 PF00011 Hsp20/alpha crystallin family NI17_004880 PF13411 MerR HTH family regulatory protein NI17_004885 PF00892 EamA-like transporter family NI17_004895 PF13532 2OG-Fe(II) oxygenase superfamily NI17_004905 PF01544 CorA-like Mg2+ transporter protein NI17_004910 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NI17_004910 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NI17_004915 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NI17_004915 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NI17_004920 PF00501 AMP-binding enzyme NI17_004925 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NI17_004930 PF00501 AMP-binding enzyme NI17_004930 PF13193 AMP-binding enzyme C-terminal domain NI17_004930 PF00668 Condensation domain NI17_004930 PF00550 Phosphopantetheine attachment site NI17_004930 PF00975 Thioesterase domain NI17_004975 PF00005 ABC transporter NI17_004990 PF13193 AMP-binding enzyme C-terminal domain NI17_004990 PF00501 AMP-binding enzyme NI17_005000 PF00271 Helicase conserved C-terminal domain NI17_005000 PF00270 DEAD/DEAH box helicase NI17_005000 PF03880 DbpA RNA binding domain NI17_005005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_005005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_005025 PF00528 Binding-protein-dependent transport system inner membrane component NI17_005030 PF00528 Binding-protein-dependent transport system inner membrane component NI17_005035 PF08402 TOBE domain NI17_005035 PF00005 ABC transporter NI17_005040 PF01494 FAD binding domain NI17_005045 PF07969 Amidohydrolase family NI17_005070 PF00296 Luciferase-like monooxygenase NI17_005075 PF00069 Protein kinase domain NI17_005075 PF00400 WD domain, G-beta repeat NI17_005095 PF00069 Protein kinase domain NI17_005115 PF02797 Chalcone and stilbene synthases, C-terminal domain NI17_005115 PF00195 Chalcone and stilbene synthases, N-terminal domain NI17_005145 PF03704 Bacterial transcriptional activator domain NI17_005145 PF00931 NB-ARC domain NI17_005145 PF00486 Transcriptional regulatory protein, C terminal NI17_005160 PF01844 HNH endonuclease NI17_005165 PF00270 DEAD/DEAH box helicase NI17_005165 PF00271 Helicase conserved C-terminal domain NI17_005175 PF13732 Domain of unknown function (DUF4162) NI17_005175 PF00005 ABC transporter NI17_005185 PF04978 Protein of unknown function (DUF664) NI17_005195 PF00440 Bacterial regulatory proteins, tetR family NI17_005210 PF00571 CBS domain NI17_005210 PF02163 Peptidase family M50 NI17_005230 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NI17_005260 PF00005 ABC transporter NI17_005270 PF00440 Bacterial regulatory proteins, tetR family NI17_005275 PF01494 FAD binding domain NI17_005290 PF00561 alpha/beta hydrolase fold NI17_005300 PF13350 Tyrosine phosphatase family NI17_005305 PF00083 Sugar (and other) transporter NI17_005335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NI17_005355 PF07728 AAA domain (dynein-related subfamily) NI17_005365 PF05762 VWA domain containing CoxE-like protein NI17_005375 PF13426 PAS domain NI17_005375 PF07228 Stage II sporulation protein E (SpoIIE) NI17_005380 PF12697 Alpha/beta hydrolase family NI17_005395 PF00072 Response regulator receiver domain NI17_005395 PF00196 Bacterial regulatory proteins, luxR family NI17_005400 PF00296 Luciferase-like monooxygenase NI17_005405 PF13192 Thioredoxin domain NI17_005405 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_005410 PF00425 chorismate binding enzyme NI17_005415 PF00857 Isochorismatase family NI17_005415 PF00550 Phosphopantetheine attachment site NI17_005435 PF00501 AMP-binding enzyme NI17_005435 PF08242 Methyltransferase domain NI17_005435 PF00550 Phosphopantetheine attachment site NI17_005435 PF00668 Condensation domain NI17_005450 PF00975 Thioesterase domain NI17_005460 PF04954 Siderophore-interacting protein NI17_005460 PF00664 ABC transporter transmembrane region NI17_005460 PF00005 ABC transporter NI17_005460 PF08021 Siderophore-interacting FAD-binding domain NI17_005465 PF00005 ABC transporter NI17_005470 PF00067 Cytochrome P450 NI17_005480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NI17_005485 PF00528 Binding-protein-dependent transport system inner membrane component NI17_005490 PF00528 Binding-protein-dependent transport system inner membrane component NI17_005490 PF12911 N-terminal TM domain of oligopeptide transport permease C NI17_005495 PF00005 ABC transporter NI17_005495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_005505 PF05448 Acetyl xylan esterase (AXE1) NI17_005510 PF00570 HRDC domain NI17_005510 PF09382 RQC domain NI17_005510 PF00270 DEAD/DEAH box helicase NI17_005510 PF00271 Helicase conserved C-terminal domain NI17_005510 PF16124 RecQ zinc-binding NI17_005530 PF00589 Phage integrase family NI17_005530 PF14659 Phage integrase, N-terminal SAM-like domain NI17_005600 PF00171 Aldehyde dehydrogenase family NI17_005625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_005625 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_005625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_005630 PF03060 Nitronate monooxygenase NI17_005640 PF00171 Aldehyde dehydrogenase family NI17_005650 PF13607 Succinyl-CoA ligase like flavodoxin domain NI17_005650 PF13380 CoA binding domain NI17_005670 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NI17_005675 PF00067 Cytochrome P450 NI17_005685 PF02515 CoA-transferase family III NI17_005690 PF02515 CoA-transferase family III NI17_005720 PF07859 alpha/beta hydrolase fold NI17_005725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NI17_005725 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_005765 PF03780 Asp23 family, cell envelope-related function NI17_005775 PF01032 FecCD transport family NI17_005780 PF01032 FecCD transport family NI17_005785 PF00005 ABC transporter NI17_005795 PF01613 Flavin reductase like domain NI17_005805 PF00082 Subtilase family NI17_005820 PF00440 Bacterial regulatory proteins, tetR family NI17_005860 PF12697 Alpha/beta hydrolase family NI17_005870 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NI17_005870 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NI17_005885 PF02146 Sir2 family NI17_005900 PF05139 Erythromycin esterase NI17_005900 PF00156 Phosphoribosyl transferase domain NI17_005905 PF01613 Flavin reductase like domain NI17_005925 PF02911 Formyl transferase, C-terminal domain NI17_005925 PF00551 Formyl transferase NI17_005945 PF07690 Major Facilitator Superfamily NI17_005995 PF01569 PAP2 superfamily NI17_006000 PF12697 Alpha/beta hydrolase family NI17_006025 PF01965 DJ-1/PfpI family NI17_006040 PF13378 Enolase C-terminal domain-like NI17_006040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NI17_006060 PF00085 Thioredoxin NI17_006075 PF00005 ABC transporter NI17_006075 PF00664 ABC transporter transmembrane region NI17_006080 PF00664 ABC transporter transmembrane region NI17_006080 PF00005 ABC transporter NI17_006090 PF00005 ABC transporter NI17_006095 PF01032 FecCD transport family NI17_006100 PF01032 FecCD transport family NI17_006105 PF12833 Helix-turn-helix domain NI17_006130 PF00553 Cellulose binding domain NI17_006130 PF01341 Glycosyl hydrolases family 6 NI17_006145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_006145 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_006145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_006150 PF18665 Tetracyclin repressor-like, C-terminal domain NI17_006150 PF00440 Bacterial regulatory proteins, tetR family NI17_006155 PF01804 Penicillin amidase NI17_006170 PF00155 Aminotransferase class I and II NI17_006175 PF07478 D-ala D-ala ligase C-terminus NI17_006175 PF01820 D-ala D-ala ligase N-terminus NI17_006205 PF09278 MerR, DNA binding NI17_006205 PF00376 MerR family regulatory protein NI17_006210 PF00561 alpha/beta hydrolase fold NI17_006220 PF12849 PBP superfamily domain NI17_006225 PF01220 Dehydroquinase class II NI17_006230 PF00128 Alpha amylase, catalytic domain NI17_006230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NI17_006235 PF00128 Alpha amylase, catalytic domain NI17_006250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NI17_006255 PF00528 Binding-protein-dependent transport system inner membrane component NI17_006260 PF12911 N-terminal TM domain of oligopeptide transport permease C NI17_006260 PF00528 Binding-protein-dependent transport system inner membrane component NI17_006265 PF00005 ABC transporter NI17_006265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_006270 PF00128 Alpha amylase, catalytic domain NI17_006270 PF11941 Domain of unknown function (DUF3459) NI17_006275 PF00232 Glycosyl hydrolase family 1 NI17_006280 PF02018 Carbohydrate binding domain NI17_006280 PF02927 Cellulase N-terminal ig-like domain NI17_006280 PF00759 Glycosyl hydrolase family 9 NI17_006285 PF00392 Bacterial regulatory proteins, gntR family NI17_006285 PF07729 FCD domain NI17_006290 PF00892 EamA-like transporter family NI17_006295 PF04542 Sigma-70 region 2 NI17_006295 PF08281 Sigma-70, region 4 NI17_006295 PF12680 SnoaL-like domain NI17_006320 PF02634 FdhD/NarQ family NI17_006335 PF16363 GDP-mannose 4,6 dehydratase NI17_006340 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain NI17_006340 PF01522 Polysaccharide deacetylase NI17_006345 PF00574 Clp protease NI17_006355 PF00356 Bacterial regulatory proteins, lacI family NI17_006360 PF01547 Bacterial extracellular solute-binding protein NI17_006365 PF00528 Binding-protein-dependent transport system inner membrane component NI17_006370 PF00528 Binding-protein-dependent transport system inner membrane component NI17_006375 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NI17_006375 PF04616 Glycosyl hydrolases family 43 NI17_006380 PF08532 Beta-galactosidase trimerisation domain NI17_006380 PF02449 Beta-galactosidase NI17_006380 PF08533 Beta-galactosidase C-terminal domain NI17_006395 PF13802 Galactose mutarotase-like NI17_006395 PF01055 Glycosyl hydrolases family 31 NI17_006400 PF03442 Carbohydrate binding domain X2 NI17_006400 PF00942 Cellulose binding domain NI17_006420 PF00528 Binding-protein-dependent transport system inner membrane component NI17_006425 PF00528 Binding-protein-dependent transport system inner membrane component NI17_006435 PF01325 Iron dependent repressor, N-terminal DNA binding domain NI17_006435 PF00480 ROK family NI17_006440 PF00933 Glycosyl hydrolase family 3 N terminal domain NI17_006440 PF01915 Glycosyl hydrolase family 3 C-terminal domain NI17_006440 PF07691 PA14 domain NI17_006440 PF14310 Fibronectin type III-like domain NI17_006490 PF09704 CRISPR-associated protein (Cas_Cas5) NI17_006500 PF01867 CRISPR associated protein Cas1 NI17_006505 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) NI17_006515 PF01047 MarR family NI17_006545 PF14602 Hexapeptide repeat of succinyl-transferase NI17_006545 PF12464 Maltose acetyltransferase NI17_006550 PF00893 Small Multidrug Resistance protein NI17_006555 PF01494 FAD binding domain NI17_006560 PF18665 Tetracyclin repressor-like, C-terminal domain NI17_006560 PF00440 Bacterial regulatory proteins, tetR family NI17_006565 PF01494 FAD binding domain NI17_006585 PF00149 Calcineurin-like phosphoesterase NI17_006615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NI17_006615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NI17_006655 PF06445 GyrI-like small molecule binding domain NI17_006655 PF12833 Helix-turn-helix domain NI17_006660 PF01323 DSBA-like thioredoxin domain NI17_006665 PF08713 DNA alkylation repair enzyme NI17_006695 PF00561 alpha/beta hydrolase fold NI17_006705 PF02803 Thiolase, C-terminal domain NI17_006705 PF00108 Thiolase, N-terminal domain NI17_006710 PF01638 HxlR-like helix-turn-helix NI17_006725 PF08240 Alcohol dehydrogenase GroES-like domain NI17_006725 PF00107 Zinc-binding dehydrogenase NI17_006740 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_006740 PF14759 Reductase C-terminal NI17_006745 PF00067 Cytochrome P450 NI17_006755 PF08240 Alcohol dehydrogenase GroES-like domain NI17_006755 PF00107 Zinc-binding dehydrogenase NI17_006765 PF02803 Thiolase, C-terminal domain NI17_006765 PF00108 Thiolase, N-terminal domain NI17_006770 PF00106 short chain dehydrogenase NI17_006775 PF00378 Enoyl-CoA hydratase/isomerase NI17_006780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_006780 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_006780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_006785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_006785 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_006785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_006795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_006795 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_006795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_006805 PF01575 MaoC like domain NI17_006810 PF00171 Aldehyde dehydrogenase family NI17_006815 PF02515 CoA-transferase family III NI17_006825 PF13458 Periplasmic binding protein NI17_006830 PF02653 Branched-chain amino acid transport system / permease component NI17_006840 PF12399 Branched-chain amino acid ATP-binding cassette transporter NI17_006840 PF00005 ABC transporter NI17_006845 PF00005 ABC transporter NI17_006850 PF07690 Major Facilitator Superfamily NI17_006870 PF00378 Enoyl-CoA hydratase/isomerase NI17_006875 PF00501 AMP-binding enzyme NI17_006875 PF13193 AMP-binding enzyme C-terminal domain NI17_006880 PF00296 Luciferase-like monooxygenase NI17_006885 PF13380 CoA binding domain NI17_006885 PF13607 Succinyl-CoA ligase like flavodoxin domain NI17_006890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NI17_006890 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_006905 PF01266 FAD dependent oxidoreductase NI17_006930 PF08281 Sigma-70, region 4 NI17_006930 PF04542 Sigma-70 region 2 NI17_006930 PF12680 SnoaL-like domain NI17_006935 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_006940 PF00083 Sugar (and other) transporter NI17_006945 PF01740 STAS domain NI17_006945 PF00916 Sulfate permease family NI17_006960 PF00009 Elongation factor Tu GTP binding domain NI17_006960 PF16658 Class II release factor RF3, C-terminal domain NI17_006965 PF13411 MerR HTH family regulatory protein NI17_006975 PF13538 UvrD-like helicase C-terminal domain NI17_006980 PF00361 Proton-conducting membrane transporter NI17_006985 PF00361 Proton-conducting membrane transporter NI17_006990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NI17_006990 PF00361 Proton-conducting membrane transporter NI17_006995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NI17_007005 PF00146 NADH dehydrogenase NI17_007015 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NI17_007025 PF00425 chorismate binding enzyme NI17_007025 PF00117 Glutamine amidotransferase class-I NI17_007025 PF04715 Anthranilate synthase component I, N terminal region NI17_007030 PF18416 N-acetylglucosamine binding protein domain 2 NI17_007030 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NI17_007040 PF01297 Zinc-uptake complex component A periplasmic NI17_007045 PF00005 ABC transporter NI17_007050 PF00950 ABC 3 transport family NI17_007060 PF01810 LysE type translocator NI17_007075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_007075 PF03466 LysR substrate binding domain NI17_007085 PF00171 Aldehyde dehydrogenase family NI17_007090 PF01557 Fumarylacetoacetate (FAA) hydrolase family NI17_007100 PF00561 alpha/beta hydrolase fold NI17_007105 PF03928 Haem-degrading NI17_007115 PF00999 Sodium/hydrogen exchanger family NI17_007120 PF00005 ABC transporter NI17_007120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_007125 PF00005 ABC transporter NI17_007125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_007130 PF00528 Binding-protein-dependent transport system inner membrane component NI17_007140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NI17_007150 PF00171 Aldehyde dehydrogenase family NI17_007155 PF01266 FAD dependent oxidoreductase NI17_007165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_007165 PF00205 Thiamine pyrophosphate enzyme, central domain NI17_007165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_007170 PF02615 Malate/L-lactate dehydrogenase NI17_007175 PF04954 Siderophore-interacting protein NI17_007175 PF08021 Siderophore-interacting FAD-binding domain NI17_007185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_007210 PF07690 Major Facilitator Superfamily NI17_007215 PF01568 Molydopterin dinucleotide binding domain NI17_007215 PF00384 Molybdopterin oxidoreductase NI17_007215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NI17_007220 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_007220 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NI17_007220 PF04324 BFD-like [2Fe-2S] binding domain NI17_007220 PF18267 Rubredoxin NAD+ reductase C-terminal domain NI17_007220 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NI17_007225 PF05175 Methyltransferase small domain NI17_007225 PF17827 PrmC N-terminal domain NI17_007230 PF04075 F420H(2)-dependent quinone reductase NI17_007235 PF03793 PASTA domain NI17_007235 PF00069 Protein kinase domain NI17_007240 PF00698 Acyl transferase domain NI17_007240 PF16197 Ketoacyl-synthetase C-terminal extension NI17_007240 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_007240 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_007240 PF08659 KR domain NI17_007240 PF00550 Phosphopantetheine attachment site NI17_007240 PF14765 Polyketide synthase dehydratase NI17_007265 PF00561 alpha/beta hydrolase fold NI17_007280 PF00440 Bacterial regulatory proteins, tetR family NI17_007285 PF00005 ABC transporter NI17_007285 PF00664 ABC transporter transmembrane region NI17_007290 PF03960 ArsC family NI17_007320 PF01526 Tn3 transposase DDE domain NI17_007330 PF00561 alpha/beta hydrolase fold NI17_007350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NI17_007350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NI17_007360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NI17_007360 PF00326 Prolyl oligopeptidase family NI17_007370 PF13462 Thioredoxin NI17_007370 PF06965 Na+/H+ antiporter 1 NI17_007375 PF07885 Ion channel NI17_007390 PF04324 BFD-like [2Fe-2S] binding domain NI17_007390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NI17_007390 PF18267 Rubredoxin NAD+ reductase C-terminal domain NI17_007390 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_007390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NI17_007390 PF13806 Rieske-like [2Fe-2S] domain NI17_007395 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NI17_007395 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NI17_007395 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_007395 PF04324 BFD-like [2Fe-2S] binding domain NI17_007395 PF13806 Rieske-like [2Fe-2S] domain NI17_007395 PF18267 Rubredoxin NAD+ reductase C-terminal domain NI17_007410 PF07730 Histidine kinase NI17_007415 PF00072 Response regulator receiver domain NI17_007415 PF00196 Bacterial regulatory proteins, luxR family NI17_007425 PF01526 Tn3 transposase DDE domain NI17_007430 PF01494 FAD binding domain NI17_007435 PF08031 Berberine and berberine like NI17_007435 PF01565 FAD binding domain NI17_007440 PF00266 Aminotransferase class-V NI17_007450 PF12706 Beta-lactamase superfamily domain NI17_007450 PF00753 Metallo-beta-lactamase superfamily NI17_007455 PF03330 Lytic transglycolase NI17_007460 PF00011 Hsp20/alpha crystallin family NI17_007485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NI17_007485 PF02785 Biotin carboxylase C-terminal domain NI17_007485 PF00289 Biotin carboxylase, N-terminal domain NI17_007515 PF00023 Ankyrin repeat NI17_007515 PF12796 Ankyrin repeats (3 copies) NI17_007520 PF01636 Phosphotransferase enzyme family NI17_007530 PF00293 NUDIX domain NI17_007555 PF01209 ubiE/COQ5 methyltransferase family NI17_007560 PF00698 Acyl transferase domain NI17_007560 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_007560 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_007560 PF08659 KR domain NI17_007560 PF00550 Phosphopantetheine attachment site NI17_007560 PF14765 Polyketide synthase dehydratase NI17_007560 PF16197 Ketoacyl-synthetase C-terminal extension NI17_007565 PF00440 Bacterial regulatory proteins, tetR family NI17_007575 PF03372 Endonuclease/Exonuclease/phosphatase family NI17_007585 PF02899 Phage integrase, N-terminal SAM-like domain NI17_007585 PF00589 Phage integrase family NI17_007605 PF00491 Arginase family NI17_007610 PF13458 Periplasmic binding protein NI17_007625 PF00005 ABC transporter NI17_007625 PF12399 Branched-chain amino acid ATP-binding cassette transporter NI17_007630 PF00005 ABC transporter NI17_007655 PF00501 AMP-binding enzyme NI17_007655 PF13193 AMP-binding enzyme C-terminal domain NI17_007660 PF01329 Pterin 4 alpha carbinolamine dehydratase NI17_007670 PF13581 Histidine kinase-like ATPase domain NI17_007670 PF08448 PAS fold NI17_007670 PF13466 STAS domain NI17_007670 PF07228 Stage II sporulation protein E (SpoIIE) NI17_007705 PF01810 LysE type translocator NI17_007710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_007710 PF03466 LysR substrate binding domain NI17_007750 PF04343 Protein of unknown function, DUF488 NI17_007755 PF00440 Bacterial regulatory proteins, tetR family NI17_007755 PF16859 Tetracyclin repressor-like, C-terminal domain NI17_007800 PF01389 OmpA-like transmembrane domain NI17_007800 PF00691 OmpA family NI17_007810 PF00743 Flavin-binding monooxygenase-like NI17_007815 PF00440 Bacterial regulatory proteins, tetR family NI17_007820 PF07690 Major Facilitator Superfamily NI17_007825 PF13538 UvrD-like helicase C-terminal domain NI17_007855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NI17_007855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NI17_007895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NI17_007895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NI17_007900 PF00596 Class II Aldolase and Adducin N-terminal domain NI17_007905 PF01261 Xylose isomerase-like TIM barrel NI17_007910 PF05336 L-rhamnose mutarotase NI17_007915 PF13407 Periplasmic binding protein domain NI17_007920 PF02653 Branched-chain amino acid transport system / permease component NI17_007925 PF02653 Branched-chain amino acid transport system / permease component NI17_007930 PF00005 ABC transporter NI17_007935 PF00356 Bacterial regulatory proteins, lacI family NI17_007940 PF01261 Xylose isomerase-like TIM barrel NI17_007945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NI17_007945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NI17_007950 PF00480 ROK family NI17_007975 PF18019 HD domain NI17_007975 PF18395 Cas3 C-terminal domain NI17_007985 PF01022 Bacterial regulatory protein, arsR family NI17_007995 PF00067 Cytochrome P450 NI17_008000 PF00176 SNF2 family N-terminal domain NI17_008000 PF12137 RNA polymerase recycling family C-terminal NI17_008000 PF18337 RapA N-terminal Tudor like domain NI17_008000 PF00271 Helicase conserved C-terminal domain NI17_008000 PF18339 RapA N-terminal Tudor like domain 1 NI17_008005 PF00271 Helicase conserved C-terminal domain NI17_008005 PF00270 DEAD/DEAH box helicase NI17_008060 PF06508 Queuosine biosynthesis protein QueC NI17_008070 PF01242 6-pyruvoyl tetrahydropterin synthase NI17_008100 PF17755 UvrA DNA-binding domain NI17_008100 PF00005 ABC transporter NI17_008100 PF17760 UvrA interaction domain NI17_008115 PF00557 Metallopeptidase family M24 NI17_008125 PF03466 LysR substrate binding domain NI17_008125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_008135 PF01783 Ribosomal L32p protein family NI17_008140 PF01197 Ribosomal protein L31 NI17_008145 PF00471 Ribosomal protein L33 NI17_008150 PF02492 CobW/HypB/UreG, nucleotide-binding domain NI17_008150 PF07683 Cobalamin synthesis protein cobW C-terminal domain NI17_008155 PF00830 Ribosomal L28 family NI17_008160 PF00253 Ribosomal protein S14p/S29e NI17_008185 PF06441 Epoxide hydrolase N terminus NI17_008200 PF01494 FAD binding domain NI17_008205 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal NI17_008205 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal NI17_008210 PF00067 Cytochrome P450 NI17_008215 PF02885 Glycosyl transferase family, helical bundle domain NI17_008215 PF00591 Glycosyl transferase family, a/b domain NI17_008220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NI17_008230 PF00975 Thioesterase domain NI17_008230 PF00550 Phosphopantetheine attachment site NI17_008230 PF00668 Condensation domain NI17_008230 PF13193 AMP-binding enzyme C-terminal domain NI17_008230 PF00501 AMP-binding enzyme NI17_008235 PF03621 MbtH-like protein NI17_008240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NI17_008245 PF00501 AMP-binding enzyme NI17_008245 PF00975 Thioesterase domain NI17_008245 PF00550 Phosphopantetheine attachment site NI17_008245 PF00391 PEP-utilising enzyme, mobile domain NI17_008245 PF13193 AMP-binding enzyme C-terminal domain NI17_008245 PF00668 Condensation domain NI17_008245 PF08241 Methyltransferase domain NI17_008255 PF00218 Indole-3-glycerol phosphate synthase NI17_008270 PF01494 FAD binding domain NI17_008275 PF00290 Tryptophan synthase alpha chain NI17_008280 PF00218 Indole-3-glycerol phosphate synthase NI17_008285 PF03301 Tryptophan 2,3-dioxygenase NI17_008295 PF03301 Tryptophan 2,3-dioxygenase NI17_008300 PF00891 O-methyltransferase domain NI17_008310 PF03795 YCII-related domain NI17_008315 PF08281 Sigma-70, region 4 NI17_008315 PF04542 Sigma-70 region 2 NI17_008320 PF07690 Major Facilitator Superfamily NI17_008330 PF08608 Wyosine base formation NI17_008330 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain NI17_008340 PF00732 GMC oxidoreductase NI17_008340 PF05199 GMC oxidoreductase NI17_008350 PF00067 Cytochrome P450 NI17_008365 PF02311 AraC-like ligand binding domain NI17_008365 PF12833 Helix-turn-helix domain NI17_008375 PF01039 Carboxyl transferase domain NI17_008380 PF16363 GDP-mannose 4,6 dehydratase NI17_008385 PF01613 Flavin reductase like domain NI17_008395 PF00698 Acyl transferase domain NI17_008395 PF14765 Polyketide synthase dehydratase NI17_008395 PF08659 KR domain NI17_008395 PF16197 Ketoacyl-synthetase C-terminal extension NI17_008395 PF00550 Phosphopantetheine attachment site NI17_008395 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_008395 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_008415 PF07690 Major Facilitator Superfamily NI17_008420 PF00067 Cytochrome P450 NI17_008425 PF00970 Oxidoreductase FAD-binding domain NI17_008425 PF00111 2Fe-2S iron-sulfur cluster binding domain NI17_008450 PF00149 Calcineurin-like phosphoesterase NI17_008470 PF08240 Alcohol dehydrogenase GroES-like domain NI17_008470 PF00107 Zinc-binding dehydrogenase NI17_008480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NI17_008485 PF00376 MerR family regulatory protein NI17_008485 PF09278 MerR, DNA binding NI17_008490 PF00356 Bacterial regulatory proteins, lacI family NI17_008495 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain NI17_008495 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain NI17_008495 PF08531 Alpha-L-rhamnosidase N-terminal domain NI17_008495 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain NI17_008500 PF00528 Binding-protein-dependent transport system inner membrane component NI17_008505 PF00528 Binding-protein-dependent transport system inner membrane component NI17_008515 PF01915 Glycosyl hydrolase family 3 C-terminal domain NI17_008515 PF07691 PA14 domain NI17_008515 PF00933 Glycosyl hydrolase family 3 N terminal domain NI17_008515 PF14310 Fibronectin type III-like domain NI17_008530 PF01494 FAD binding domain NI17_008540 PF03466 LysR substrate binding domain NI17_008540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_008545 PF12680 SnoaL-like domain NI17_008545 PF04542 Sigma-70 region 2 NI17_008545 PF08281 Sigma-70, region 4 NI17_008565 PF02525 Flavodoxin-like fold NI17_008570 PF12833 Helix-turn-helix domain NI17_008570 PF01965 DJ-1/PfpI family NI17_008575 PF00313 'Cold-shock' DNA-binding domain NI17_008585 PF04239 Protein of unknown function (DUF421) NI17_008595 PF00067 Cytochrome P450 NI17_008600 PF00106 short chain dehydrogenase NI17_008625 PF02543 Carbamoyltransferase N-terminus NI17_008625 PF16861 Carbamoyltransferase C-terminus NI17_008630 PF01209 ubiE/COQ5 methyltransferase family NI17_008660 PF08502 LeuA allosteric (dimerisation) domain NI17_008660 PF00682 HMGL-like NI17_008665 PF03547 Membrane transport protein NI17_008670 PF01910 Thiamine-binding protein NI17_008675 PF01557 Fumarylacetoacetate (FAA) hydrolase family NI17_008685 PF00248 Aldo/keto reductase family NI17_008690 PF14310 Fibronectin type III-like domain NI17_008690 PF01915 Glycosyl hydrolase family 3 C-terminal domain NI17_008690 PF00933 Glycosyl hydrolase family 3 N terminal domain NI17_008700 PF07690 Major Facilitator Superfamily NI17_008705 PF03466 LysR substrate binding domain NI17_008705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_008730 PF01070 FMN-dependent dehydrogenase NI17_008735 PF00528 Binding-protein-dependent transport system inner membrane component NI17_008740 PF00005 ABC transporter NI17_008760 PF00378 Enoyl-CoA hydratase/isomerase NI17_008765 PF00108 Thiolase, N-terminal domain NI17_008765 PF02803 Thiolase, C-terminal domain NI17_008770 PF08240 Alcohol dehydrogenase GroES-like domain NI17_008770 PF00107 Zinc-binding dehydrogenase NI17_008800 PF00378 Enoyl-CoA hydratase/isomerase NI17_008805 PF00501 AMP-binding enzyme NI17_008805 PF13193 AMP-binding enzyme C-terminal domain NI17_008810 PF00501 AMP-binding enzyme NI17_008810 PF13193 AMP-binding enzyme C-terminal domain NI17_008815 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_008815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_008815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_008835 PF12728 Helix-turn-helix domain NI17_008845 PF02310 B12 binding domain NI17_008845 PF01642 Methylmalonyl-CoA mutase NI17_008850 PF01642 Methylmalonyl-CoA mutase NI17_008850 PF02310 B12 binding domain NI17_008860 PF00378 Enoyl-CoA hydratase/isomerase NI17_008865 PF01144 Coenzyme A transferase NI17_008880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_008880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_008880 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_008885 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NI17_008885 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NI17_008890 PF00378 Enoyl-CoA hydratase/isomerase NI17_008905 PF13577 SnoaL-like domain NI17_008920 PF11862 Domain of unknown function (DUF3382) NI17_008920 PF02653 Branched-chain amino acid transport system / permease component NI17_008930 PF12399 Branched-chain amino acid ATP-binding cassette transporter NI17_008930 PF00005 ABC transporter NI17_008935 PF00005 ABC transporter NI17_008940 PF00890 FAD binding domain NI17_008945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_008945 PF00205 Thiamine pyrophosphate enzyme, central domain NI17_008945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_008955 PF00890 FAD binding domain NI17_008960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NI17_008960 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_008965 PF00171 Aldehyde dehydrogenase family NI17_008970 PF01575 MaoC like domain NI17_008975 PF09278 MerR, DNA binding NI17_008975 PF00376 MerR family regulatory protein NI17_008980 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_008980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_008980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_008985 PF13411 MerR HTH family regulatory protein NI17_009000 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NI17_009000 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NI17_009005 PF00501 AMP-binding enzyme NI17_009005 PF00550 Phosphopantetheine attachment site NI17_009005 PF13193 AMP-binding enzyme C-terminal domain NI17_009005 PF07993 Male sterility protein NI17_009005 PF00668 Condensation domain NI17_009010 PF00501 AMP-binding enzyme NI17_009010 PF13193 AMP-binding enzyme C-terminal domain NI17_009010 PF00975 Thioesterase domain NI17_009010 PF00668 Condensation domain NI17_009010 PF00550 Phosphopantetheine attachment site NI17_009015 PF03358 NADPH-dependent FMN reductase NI17_009020 PF01613 Flavin reductase like domain NI17_009025 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NI17_009025 PF01243 Pyridoxamine 5'-phosphate oxidase NI17_009030 PF02567 Phenazine biosynthesis-like protein NI17_009040 PF00117 Glutamine amidotransferase class-I NI17_009040 PF00425 chorismate binding enzyme NI17_009045 PF00857 Isochorismatase family NI17_009050 PF01474 Class-II DAHP synthetase family NI17_009055 PF03284 Phenazine biosynthesis protein A/B NI17_009060 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NI17_009060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_009065 PF00106 short chain dehydrogenase NI17_009070 PF13847 Methyltransferase domain NI17_009075 PF01565 FAD binding domain NI17_009075 PF08031 Berberine and berberine like NI17_009080 PF12681 Glyoxalase-like domain NI17_009090 PF03466 LysR substrate binding domain NI17_009090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_009095 PF07690 Major Facilitator Superfamily NI17_009125 PF00106 short chain dehydrogenase NI17_009130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_009130 PF03466 LysR substrate binding domain NI17_009135 PF03795 YCII-related domain NI17_009140 PF04542 Sigma-70 region 2 NI17_009140 PF08281 Sigma-70, region 4 NI17_009165 PF13186 Iron-sulfur cluster-binding domain NI17_009165 PF04055 Radical SAM superfamily NI17_009185 PF01370 NAD dependent epimerase/dehydratase family NI17_009200 PF17763 Glutaminase/Asparaginase C-terminal domain NI17_009200 PF00710 Asparaginase, N-terminal NI17_009240 PF00440 Bacterial regulatory proteins, tetR family NI17_009240 PF17754 MftR C-terminal domain NI17_009300 PF00664 ABC transporter transmembrane region NI17_009300 PF00005 ABC transporter NI17_009305 PF00664 ABC transporter transmembrane region NI17_009305 PF00005 ABC transporter NI17_009310 PF00202 Aminotransferase class-III NI17_009320 PF00067 Cytochrome P450 NI17_009410 PF13546 DDE superfamily endonuclease NI17_009455 PF01443 Viral (Superfamily 1) RNA helicase NI17_009455 PF03389 MobA/MobL family NI17_009455 PF17841 BID domain of Bartonella effector protein (Bep) NI17_009500 PF13393 Histidyl-tRNA synthetase NI17_009510 PF00005 ABC transporter NI17_009520 PF03704 Bacterial transcriptional activator domain NI17_009530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NI17_009530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NI17_009575 PF00665 Integrase core domain NI17_009575 PF13276 HTH-like domain NI17_009585 PF01527 Transposase NI17_009655 PF03747 ADP-ribosylglycohydrolase NI17_009795 PF05147 Lanthionine synthetase C-like protein NI17_009825 PF00919 Uncharacterized protein family UPF0004 NI17_009825 PF04055 Radical SAM superfamily NI17_009825 PF01938 TRAM domain NI17_009830 PF02223 Thymidylate kinase NI17_009870 PF00293 NUDIX domain NI17_009875 PF08239 Bacterial SH3 domain NI17_009875 PF01476 LysM domain NI17_009875 PF00877 NlpC/P60 family NI17_009910 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_009910 PF00550 Phosphopantetheine attachment site NI17_009910 PF16197 Ketoacyl-synthetase C-terminal extension NI17_009910 PF00698 Acyl transferase domain NI17_009910 PF14765 Polyketide synthase dehydratase NI17_009910 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_009910 PF08659 KR domain NI17_009935 PF02899 Phage integrase, N-terminal SAM-like domain NI17_009935 PF00589 Phage integrase family NI17_009950 PF01526 Tn3 transposase DDE domain NI17_009950 PF13700 Domain of unknown function (DUF4158) NI17_010025 PF01022 Bacterial regulatory protein, arsR family NI17_010100 PF01476 LysM domain NI17_010100 PF08239 Bacterial SH3 domain NI17_010100 PF00877 NlpC/P60 family NI17_010195 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NI17_010195 PF01348 Type II intron maturase NI17_010210 PF09827 CRISPR associated protein Cas2 NI17_010215 PF01867 CRISPR associated protein Cas1 NI17_010225 PF00271 Helicase conserved C-terminal domain NI17_010225 PF18019 HD domain NI17_010225 PF00270 DEAD/DEAH box helicase NI17_010255 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NI17_010255 PF18766 SWI2/SNF2 ATPase NI17_010255 PF11867 Domain of unknown function (DUF3387) NI17_010265 PF02384 N-6 DNA Methylase NI17_010285 PF00202 Aminotransferase class-III NI17_010320 PF00248 Aldo/keto reductase family NI17_010340 PF01476 LysM domain NI17_010340 PF00877 NlpC/P60 family NI17_010340 PF08239 Bacterial SH3 domain NI17_010395 PF13847 Methyltransferase domain NI17_010395 PF03551 Transcriptional regulator PadR-like family NI17_010435 PF00437 Type II/IV secretion system protein NI17_010510 PF18019 HD domain NI17_010525 PF09827 CRISPR associated protein Cas2 NI17_010535 PF02899 Phage integrase, N-terminal SAM-like domain NI17_010535 PF00589 Phage integrase family NI17_010570 PF08239 Bacterial SH3 domain NI17_010570 PF00877 NlpC/P60 family NI17_010570 PF01476 LysM domain NI17_010650 PF04072 Leucine carboxyl methyltransferase NI17_010655 PF00271 Helicase conserved C-terminal domain NI17_010655 PF12419 SNF2 Helicase protein NI17_010655 PF00176 SNF2 family N-terminal domain NI17_010670 PF00313 'Cold-shock' DNA-binding domain NI17_010675 PF01568 Molydopterin dinucleotide binding domain NI17_010675 PF00384 Molybdopterin oxidoreductase NI17_010690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_010690 PF03466 LysR substrate binding domain NI17_010695 PF00291 Pyridoxal-phosphate dependent enzyme NI17_010695 PF13291 ACT domain NI17_010700 PF00535 Glycosyl transferase family 2 NI17_010710 PF00557 Metallopeptidase family M24 NI17_010710 PF05195 Aminopeptidase P, N-terminal domain NI17_010740 PF00156 Phosphoribosyl transferase domain NI17_010740 PF01738 Dienelactone hydrolase family NI17_010770 PF00291 Pyridoxal-phosphate dependent enzyme NI17_010780 PF00005 ABC transporter NI17_010785 PF01032 FecCD transport family NI17_010795 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NI17_010815 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NI17_010815 PF14490 Helix-hairpin-helix containing domain NI17_010815 PF13538 UvrD-like helicase C-terminal domain NI17_010830 PF13823 Alcohol dehydrogenase GroES-associated NI17_010830 PF08240 Alcohol dehydrogenase GroES-like domain NI17_010830 PF00107 Zinc-binding dehydrogenase NI17_010835 PF00291 Pyridoxal-phosphate dependent enzyme NI17_010840 PF08279 HTH domain NI17_010840 PF13280 WYL domain NI17_010845 PF05675 Protein of unknown function (DUF817) NI17_010850 PF00069 Protein kinase domain NI17_010850 PF00400 WD domain, G-beta repeat NI17_010870 PF00067 Cytochrome P450 NI17_010875 PF13397 RNA polymerase-binding protein NI17_010880 PF13344 Haloacid dehalogenase-like hydrolase NI17_010890 PF00795 Carbon-nitrogen hydrolase NI17_010890 PF00535 Glycosyl transferase family 2 NI17_010895 PF00005 ABC transporter NI17_010895 PF17912 MalK OB fold domain NI17_010895 PF03459 TOBE domain NI17_010900 PF13439 Glycosyltransferase Family 4 NI17_010900 PF00534 Glycosyl transferases group 1 NI17_010905 PF00128 Alpha amylase, catalytic domain NI17_010910 PF00270 DEAD/DEAH box helicase NI17_010910 PF00271 Helicase conserved C-terminal domain NI17_010910 PF08148 DSHCT (NUC185) domain NI17_010915 PF00781 Diacylglycerol kinase catalytic domain NI17_010925 PF00902 Sec-independent protein translocase protein (TatC) NI17_010930 PF02416 mttA/Hcf106 family NI17_010940 PF13280 WYL domain NI17_010955 PF11774 Lsr2 NI17_010960 PF08240 Alcohol dehydrogenase GroES-like domain NI17_010960 PF00107 Zinc-binding dehydrogenase NI17_010965 PF00171 Aldehyde dehydrogenase family NI17_010970 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_010970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_010970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_010975 PF00196 Bacterial regulatory proteins, luxR family NI17_010995 PF00005 ABC transporter NI17_011000 PF00005 ABC transporter NI17_011000 PF12399 Branched-chain amino acid ATP-binding cassette transporter NI17_011010 PF00392 Bacterial regulatory proteins, gntR family NI17_011010 PF07729 FCD domain NI17_011015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NI17_011015 PF13378 Enolase C-terminal domain-like NI17_011025 PF03136 Pup-ligase protein NI17_011030 PF00227 Proteasome subunit NI17_011035 PF00227 Proteasome subunit NI17_011040 PF05639 Pup-like protein NI17_011050 PF03136 Pup-ligase protein NI17_011060 PF01048 Phosphorylase superfamily NI17_011070 PF17758 Proteasomal ATPase OB N-terminal domain NI17_011070 PF00004 ATPase family associated with various cellular activities (AAA) NI17_011070 PF16450 Proteasomal ATPase OB C-terminal domain NI17_011075 PF08704 tRNA methyltransferase complex GCD14 subunit NI17_011080 PF00480 ROK family NI17_011100 PF00144 Beta-lactamase NI17_011105 PF00571 CBS domain NI17_011105 PF02163 Peptidase family M50 NI17_011115 PF00196 Bacterial regulatory proteins, luxR family NI17_011115 PF00072 Response regulator receiver domain NI17_011125 PF00005 ABC transporter NI17_011125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_011130 PF00528 Binding-protein-dependent transport system inner membrane component NI17_011135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NI17_011140 PF12911 N-terminal TM domain of oligopeptide transport permease C NI17_011140 PF00528 Binding-protein-dependent transport system inner membrane component NI17_011150 PF13419 Haloacid dehalogenase-like hydrolase NI17_011155 PF02310 B12 binding domain NI17_011155 PF02607 B12 binding domain NI17_011155 PF02965 Vitamin B12 dependent methionine synthase, activation domain NI17_011155 PF00809 Pterin binding enzyme NI17_011155 PF02574 Homocysteine S-methyltransferase NI17_011175 PF00183 Hsp90 protein NI17_011180 PF01406 tRNA synthetases class I (C) catalytic domain NI17_011210 PF02673 Bacitracin resistance protein BacA NI17_011215 PF00248 Aldo/keto reductase family NI17_011250 PF00196 Bacterial regulatory proteins, luxR family NI17_011250 PF00072 Response regulator receiver domain NI17_011255 PF07730 Histidine kinase NI17_011260 PF12704 MacB-like periplasmic core domain NI17_011260 PF02687 FtsX-like permease family NI17_011260 PF00005 ABC transporter NI17_011265 PF00005 ABC transporter NI17_011265 PF02687 FtsX-like permease family NI17_011265 PF12704 MacB-like periplasmic core domain NI17_011285 PF00535 Glycosyl transferase family 2 NI17_011285 PF00795 Carbon-nitrogen hydrolase NI17_011290 PF00455 DeoR C terminal sensor domain NI17_011290 PF08220 DeoR-like helix-turn-helix domain NI17_011300 PF07690 Major Facilitator Superfamily NI17_011305 PF08220 DeoR-like helix-turn-helix domain NI17_011305 PF00455 DeoR C terminal sensor domain NI17_011310 PF01648 4'-phosphopantetheinyl transferase superfamily NI17_011315 PF00326 Prolyl oligopeptidase family NI17_011315 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NI17_011400 PF05977 Transmembrane secretion effector NI17_011405 PF02261 Aspartate decarboxylase NI17_011410 PF03621 MbtH-like protein NI17_011415 PF01497 Periplasmic binding protein NI17_011420 PF00975 Thioesterase domain NI17_011420 PF13193 AMP-binding enzyme C-terminal domain NI17_011420 PF00550 Phosphopantetheine attachment site NI17_011420 PF00668 Condensation domain NI17_011420 PF00501 AMP-binding enzyme NI17_011425 PF00668 Condensation domain NI17_011425 PF00501 AMP-binding enzyme NI17_011425 PF13193 AMP-binding enzyme C-terminal domain NI17_011425 PF00550 Phosphopantetheine attachment site NI17_011430 PF00550 Phosphopantetheine attachment site NI17_011430 PF00668 Condensation domain NI17_011430 PF00501 AMP-binding enzyme NI17_011430 PF13193 AMP-binding enzyme C-terminal domain NI17_011440 PF00857 Isochorismatase family NI17_011445 PF13193 AMP-binding enzyme C-terminal domain NI17_011445 PF00501 AMP-binding enzyme NI17_011450 PF00425 chorismate binding enzyme NI17_011455 PF00106 short chain dehydrogenase NI17_011465 PF03773 Predicted permease NI17_011470 PF16884 N-terminal domain of oxidoreductase NI17_011470 PF00107 Zinc-binding dehydrogenase NI17_011480 PF00270 DEAD/DEAH box helicase NI17_011480 PF00271 Helicase conserved C-terminal domain NI17_011485 PF00378 Enoyl-CoA hydratase/isomerase NI17_011495 PF00005 ABC transporter NI17_011495 PF12848 ABC transporter NI17_011500 PF01594 AI-2E family transporter NI17_011515 PF01738 Dienelactone hydrolase family NI17_011515 PF00156 Phosphoribosyl transferase domain NI17_011540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NI17_011540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NI17_011550 PF01507 Phosphoadenosine phosphosulfate reductase family NI17_011560 PF18158 Adaptive response protein AidB N-terminal domain NI17_011560 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_011560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_011565 PF00128 Alpha amylase, catalytic domain NI17_011565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NI17_011575 PF01641 SelR domain NI17_011580 PF02666 Phosphatidylserine decarboxylase NI17_011615 PF06778 Chlorite dismutase NI17_011620 PF01593 Flavin containing amine oxidoreductase NI17_011630 PF01208 Uroporphyrinogen decarboxylase (URO-D) NI17_011650 PF02803 Thiolase, C-terminal domain NI17_011650 PF00108 Thiolase, N-terminal domain NI17_011655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NI17_011655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NI17_011655 PF00378 Enoyl-CoA hydratase/isomerase NI17_011685 PF04542 Sigma-70 region 2 NI17_011685 PF08281 Sigma-70, region 4 NI17_011690 PF03795 YCII-related domain NI17_011695 PF02386 Cation transport protein NI17_011700 PF03176 MMPL family NI17_011705 PF00440 Bacterial regulatory proteins, tetR family NI17_011705 PF13305 Tetracyclin repressor-like, C-terminal domain NI17_011715 PF00069 Protein kinase domain NI17_011715 PF00400 WD domain, G-beta repeat NI17_011720 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family NI17_011725 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_011735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NI17_011735 PF02779 Transketolase, pyrimidine binding domain NI17_011735 PF02780 Transketolase, C-terminal domain NI17_011740 PF03167 Uracil DNA glycosylase superfamily NI17_011750 PF02653 Branched-chain amino acid transport system / permease component NI17_011755 PF00005 ABC transporter NI17_011760 PF13407 Periplasmic binding protein domain NI17_011765 PF01325 Iron dependent repressor, N-terminal DNA binding domain NI17_011765 PF00480 ROK family NI17_011775 PF04542 Sigma-70 region 2 NI17_011775 PF04545 Sigma-70, region 4 NI17_011790 PF01497 Periplasmic binding protein NI17_011795 PF01032 FecCD transport family NI17_011800 PF01032 FecCD transport family NI17_011805 PF00005 ABC transporter NI17_011820 PF00330 Aconitase family (aconitate hydratase) NI17_011820 PF00694 Aconitase C-terminal domain NI17_011830 PF01938 TRAM domain NI17_011830 PF05958 tRNA (Uracil-5-)-methyltransferase NI17_011835 PF02254 TrkA-N domain NI17_011835 PF02080 TrkA-C domain NI17_011840 PF02080 TrkA-C domain NI17_011840 PF02254 TrkA-N domain NI17_011845 PF00296 Luciferase-like monooxygenase NI17_011850 PF03358 NADPH-dependent FMN reductase NI17_011870 PF00692 dUTPase NI17_011875 PF00133 tRNA synthetases class I (I, L, M and V) NI17_011875 PF08264 Anticodon-binding domain of tRNA NI17_011895 PF00672 HAMP domain NI17_011895 PF00512 His Kinase A (phospho-acceptor) domain NI17_011895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_011900 PF00486 Transcriptional regulatory protein, C terminal NI17_011900 PF00072 Response regulator receiver domain NI17_011910 PF00459 Inositol monophosphatase family NI17_011920 PF00762 Ferrochelatase NI17_011925 PF04030 D-arabinono-1,4-lactone oxidase NI17_011925 PF01565 FAD binding domain NI17_011930 PF11268 Protein of unknown function (DUF3071) NI17_011955 PF00484 Carbonic anhydrase NI17_011970 PF00300 Histidine phosphatase superfamily (branch 1) NI17_011970 PF13456 Reverse transcriptase-like NI17_011980 PF01784 NIF3 (NGG1p interacting factor 3) NI17_011985 PF02558 Ketopantoate reductase PanE/ApbA NI17_011985 PF08546 Ketopantoate reductase PanE/ApbA C terminal NI17_011995 PF01261 Xylose isomerase-like TIM barrel NI17_012005 PF02011 Glycosyl hydrolase family 48 NI17_012005 PF00553 Cellulose binding domain NI17_012005 PF00041 Fibronectin type III domain NI17_012015 PF03481 Putative GTP-binding controlling metal-binding NI17_012015 PF01300 Telomere recombination NI17_012020 PF08962 Domain of unknown function (DUF1876) NI17_012025 PF04978 Protein of unknown function (DUF664) NI17_012030 PF05175 Methyltransferase small domain NI17_012030 PF08468 Methyltransferase small domain N-terminal NI17_012055 PF12728 Helix-turn-helix domain NI17_012075 PF00578 AhpC/TSA family NI17_012080 PF11253 Protein of unknown function (DUF3052) NI17_012085 PF01894 Uncharacterised protein family UPF0047 NI17_012095 PF02626 Carboxyltransferase domain, subdomain A and B NI17_012100 PF02682 Carboxyltransferase domain, subdomain C and D NI17_012105 PF03746 LamB/YcsF family NI17_012115 PF17853 GGDEF-like domain NI17_012115 PF13556 PucR C-terminal helix-turn-helix domain NI17_012120 PF00698 Acyl transferase domain NI17_012125 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NI17_012125 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NI17_012130 PF00550 Phosphopantetheine attachment site NI17_012135 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_012135 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_012140 PF01039 Carboxyl transferase domain NI17_012165 PF00753 Metallo-beta-lactamase superfamily NI17_012175 PF01883 Iron-sulfur cluster assembly protein NI17_012180 PF01592 NifU-like N terminal domain NI17_012185 PF00266 Aminotransferase class-V NI17_012190 PF00005 ABC transporter NI17_012200 PF01458 Uncharacterized protein family (UPF0051) NI17_012205 PF01458 Uncharacterized protein family (UPF0051) NI17_012215 PF00005 ABC transporter NI17_012230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NI17_012230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NI17_012240 PF00892 EamA-like transporter family NI17_012255 PF01425 Amidase NI17_012265 PF02909 Tetracyclin repressor-like, C-terminal domain NI17_012265 PF00440 Bacterial regulatory proteins, tetR family NI17_012270 PF13193 AMP-binding enzyme C-terminal domain NI17_012270 PF00501 AMP-binding enzyme NI17_012275 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_012275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_012275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_012285 PF13847 Methyltransferase domain NI17_012295 PF01040 UbiA prenyltransferase family NI17_012300 PF02780 Transketolase, C-terminal domain NI17_012300 PF02779 Transketolase, pyrimidine binding domain NI17_012300 PF00456 Transketolase, thiamine diphosphate binding domain NI17_012305 PF00923 Transaldolase/Fructose-6-phosphate aldolase NI17_012310 PF00342 Phosphoglucose isomerase NI17_012315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NI17_012315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NI17_012325 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NI17_012360 PF18370 Rhamnogalacturonan I lyases beta-sheet domain NI17_012375 PF13520 Amino acid permease NI17_012385 PF07687 Peptidase dimerisation domain NI17_012385 PF01546 Peptidase family M20/M25/M40 NI17_012390 PF01738 Dienelactone hydrolase family NI17_012395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NI17_012405 PF03840 Preprotein translocase SecG subunit NI17_012410 PF00121 Triosephosphate isomerase NI17_012415 PF00162 Phosphoglycerate kinase NI17_012420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NI17_012420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NI17_012425 PF10298 WhiA N-terminal LAGLIDADG-like domain NI17_012425 PF02650 WhiA C-terminal HTH domain NI17_012425 PF14527 WhiA LAGLIDADG-like domain NI17_012430 PF01933 Uncharacterised protein family UPF0052 NI17_012435 PF03668 P-loop ATPase protein family NI17_012440 PF01541 GIY-YIG catalytic domain NI17_012440 PF02151 UvrB/uvrC motif NI17_012440 PF08459 UvrC Helix-hairpin-helix N-terminal NI17_012460 PF00005 ABC transporter NI17_012460 PF17755 UvrA DNA-binding domain NI17_012460 PF17760 UvrA interaction domain NI17_012465 PF03741 Integral membrane protein TerC family NI17_012485 PF11382 Copper transport outer membrane protein, MctB NI17_012495 PF02463 RecF/RecN/SMC N terminal domain NI17_012500 PF01513 ATP-NAD kinase NI17_012505 PF01479 S4 domain NI17_012505 PF01728 FtsJ-like methyltransferase NI17_012530 PF13344 Haloacid dehalogenase-like hydrolase NI17_012530 PF18407 GCN5-related N-acetyltransferase like domain NI17_012545 PF00583 Acetyltransferase (GNAT) family NI17_012575 PF00579 tRNA synthetases class I (W and Y) NI17_012580 PF00561 alpha/beta hydrolase fold NI17_012600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_012600 PF00512 His Kinase A (phospho-acceptor) domain NI17_012620 PF03259 Roadblock/LC7 domain NI17_012630 PF14698 Argininosuccinate lyase C-terminal NI17_012630 PF00206 Lyase NI17_012635 PF00764 Arginosuccinate synthase NI17_012640 PF01316 Arginine repressor, DNA binding domain NI17_012640 PF02863 Arginine repressor, C-terminal domain NI17_012645 PF00202 Aminotransferase class-III NI17_012650 PF00696 Amino acid kinase family NI17_012655 PF01960 ArgJ family NI17_012660 PF01118 Semialdehyde dehydrogenase, NAD binding domain NI17_012660 PF02774 Semialdehyde dehydrogenase, dimerisation domain NI17_012665 PF01593 Flavin containing amine oxidoreductase NI17_012670 PF01047 MarR family NI17_012680 PF00486 Transcriptional regulatory protein, C terminal NI17_012680 PF00072 Response regulator receiver domain NI17_012685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_012685 PF00672 HAMP domain NI17_012685 PF00512 His Kinase A (phospho-acceptor) domain NI17_012695 PF03483 B3/4 domain NI17_012695 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NI17_012695 PF03484 tRNA synthetase B5 domain NI17_012695 PF03147 Ferredoxin-fold anticodon binding domain NI17_012695 PF01588 Putative tRNA binding domain NI17_012700 PF01409 tRNA synthetases class II core domain (F) NI17_012700 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NI17_012705 PF00989 PAS fold NI17_012705 PF00512 His Kinase A (phospho-acceptor) domain NI17_012705 PF18698 Histidine kinase sensor domain NI17_012705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_012705 PF00672 HAMP domain NI17_012710 PF08032 RNA 2'-O ribose methyltransferase substrate binding NI17_012710 PF00588 SpoU rRNA Methylase family NI17_012715 PF00453 Ribosomal protein L20 NI17_012720 PF01632 Ribosomal protein L35 NI17_012725 PF00707 Translation initiation factor IF-3, C-terminal domain NI17_012725 PF05198 Translation initiation factor IF-3, N-terminal domain NI17_012730 PF01488 Shikimate / quinate 5-dehydrogenase NI17_012730 PF08501 Shikimate dehydrogenase substrate binding domain NI17_012730 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NI17_012740 PF03652 Holliday junction resolvase NI17_012745 PF02272 DHHA1 domain NI17_012745 PF01411 tRNA synthetases class II (A) NI17_012745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NI17_012750 PF02698 DUF218 domain NI17_012805 PF00400 WD domain, G-beta repeat NI17_012805 PF00069 Protein kinase domain NI17_012810 PF12002 MgsA AAA+ ATPase C terminal NI17_012810 PF16193 AAA C-terminal domain NI17_012810 PF00004 ATPase family associated with various cellular activities (AAA) NI17_012820 PF07228 Stage II sporulation protein E (SpoIIE) NI17_012820 PF13466 STAS domain NI17_012820 PF13581 Histidine kinase-like ATPase domain NI17_012820 PF08448 PAS fold NI17_012835 PF00152 tRNA synthetases class II (D, K and N) NI17_012835 PF02938 GAD domain NI17_012835 PF01336 OB-fold nucleic acid binding domain NI17_012840 PF00753 Metallo-beta-lactamase superfamily NI17_012845 PF03993 Domain of Unknown Function (DUF349) NI17_012855 PF02824 TGS domain NI17_012855 PF04607 Region found in RelA / SpoT proteins NI17_012855 PF13291 ACT domain NI17_012860 PF00156 Phosphoribosyl transferase domain NI17_012865 PF02699 Preprotein translocase subunit NI17_012870 PF05496 Holliday junction DNA helicase RuvB P-loop domain NI17_012870 PF05491 RuvB C-terminal winged helix domain NI17_012870 PF17864 RuvB AAA lid domain NI17_012875 PF01330 RuvA N terminal domain NI17_012875 PF07499 RuvA, C-terminal domain NI17_012880 PF02075 Crossover junction endodeoxyribonuclease RuvC NI17_012885 PF01709 Transcriptional regulator NI17_012890 PF01174 SNO glutamine amidotransferase family NI17_012895 PF01680 SOR/SNZ family NI17_012905 PF13439 Glycosyltransferase Family 4 NI17_012910 PF03279 Bacterial lipid A biosynthesis acyltransferase NI17_012915 PF01066 CDP-alcohol phosphatidyltransferase NI17_012925 PF01230 HIT domain NI17_012930 PF03471 Transporter associated domain NI17_012930 PF03741 Integral membrane protein TerC family NI17_012945 PF03129 Anticodon binding domain NI17_012945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NI17_012945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NI17_012950 PF01494 FAD binding domain NI17_012965 PF04686 Streptomyces sporulation and cell division protein, SsgA NI17_012970 PF01063 Amino-transferase class IV NI17_013000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NI17_013040 PF01979 Amidohydrolase family NI17_013055 PF01638 HxlR-like helix-turn-helix NI17_013060 PF01161 Phosphatidylethanolamine-binding protein NI17_013065 PF13419 Haloacid dehalogenase-like hydrolase NI17_013070 PF08044 Domain of unknown function (DUF1707) NI17_013075 PF08044 Domain of unknown function (DUF1707) NI17_013120 PF00549 CoA-ligase NI17_013120 PF08442 ATP-grasp domain NI17_013130 PF16124 RecQ zinc-binding NI17_013130 PF00271 Helicase conserved C-terminal domain NI17_013130 PF00570 HRDC domain NI17_013130 PF16124 RecQ zinc-binding NI17_013130 PF00570 HRDC domain NI17_013130 PF00271 Helicase conserved C-terminal domain NI17_013130 PF00270 DEAD/DEAH box helicase NI17_013130 PF09382 RQC domain NI17_013130 PF09382 RQC domain NI17_013130 PF00270 DEAD/DEAH box helicase NI17_013140 PF03334 Na+/H+ antiporter subunit NI17_013145 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NI17_013150 PF01899 Na+/H+ ion antiporter subunit NI17_013155 PF00361 Proton-conducting membrane transporter NI17_013160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NI17_013165 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NI17_013170 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NI17_013170 PF00361 Proton-conducting membrane transporter NI17_013170 PF13244 Domain of unknown function (DUF4040) NI17_013175 PF03989 DNA gyrase C-terminal domain, beta-propeller NI17_013175 PF00521 DNA gyrase/topoisomerase IV, subunit A NI17_013180 PF00484 Carbonic anhydrase NI17_013195 PF00986 DNA gyrase B subunit, carboxyl terminus NI17_013195 PF00204 DNA gyrase B NI17_013195 PF01751 Toprim domain NI17_013195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_013210 PF03883 Peroxide stress protein YaaA NI17_013225 PF04539 Sigma-70 region 3 NI17_013225 PF00140 Sigma-70 factor, region 1.2 NI17_013225 PF04542 Sigma-70 region 2 NI17_013225 PF04545 Sigma-70, region 4 NI17_013245 PF12804 MobA-like NTP transferase domain NI17_013250 PF17866 AAA lid domain NI17_013250 PF00004 ATPase family associated with various cellular activities (AAA) NI17_013255 PF01351 Ribonuclease HII NI17_013280 PF02867 Ribonucleotide reductase, barrel domain NI17_013280 PF08471 Class II vitamin B12-dependent ribonucleotide reductase NI17_013285 PF03477 ATP cone domain NI17_013290 PF01476 LysM domain NI17_013295 PF01726 LexA DNA binding domain NI17_013295 PF00717 Peptidase S24-like NI17_013315 PF08264 Anticodon-binding domain of tRNA NI17_013315 PF13603 Leucyl-tRNA synthetase, Domain 2 NI17_013315 PF00133 tRNA synthetases class I (I, L, M and V) NI17_013315 PF09334 tRNA synthetases class I (M) NI17_013325 PF13193 AMP-binding enzyme C-terminal domain NI17_013325 PF00501 AMP-binding enzyme NI17_013330 PF03073 TspO/MBR family NI17_013355 PF01177 Asp/Glu/Hydantoin racemase NI17_013385 PF13307 Helicase C-terminal domain NI17_013395 PF00528 Binding-protein-dependent transport system inner membrane component NI17_013400 PF00528 Binding-protein-dependent transport system inner membrane component NI17_013410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NI17_013410 PF00356 Bacterial regulatory proteins, lacI family NI17_013425 PF00544 Pectate lyase NI17_013435 PF07690 Major Facilitator Superfamily NI17_013465 PF00300 Histidine phosphatase superfamily (branch 1) NI17_013475 PF01467 Cytidylyltransferase-like NI17_013480 PF01435 Peptidase family M48 NI17_013485 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 NI17_013485 PF00535 Glycosyl transferase family 2 NI17_013500 PF00171 Aldehyde dehydrogenase family NI17_013510 PF00759 Glycosyl hydrolase family 9 NI17_013510 PF00942 Cellulose binding domain NI17_013510 PF00553 Cellulose binding domain NI17_013510 PF00041 Fibronectin type III domain NI17_013515 PF01472 PUA domain NI17_013515 PF00696 Amino acid kinase family NI17_013520 PF09269 Domain of unknown function (DUF1967) NI17_013520 PF01018 GTP1/OBG NI17_013520 PF01926 50S ribosome-binding GTPase NI17_013525 PF01016 Ribosomal L27 protein NI17_013530 PF00829 Ribosomal prokaryotic L21 protein NI17_013535 PF10150 Ribonuclease E/G family NI17_013560 PF01098 Cell cycle protein NI17_013575 PF00334 Nucleoside diphosphate kinase NI17_013585 PF02875 Mur ligase family, glutamate ligase domain NI17_013585 PF08245 Mur ligase middle domain NI17_013610 PF07724 AAA domain (Cdc48 subfamily) NI17_013610 PF10431 C-terminal, D2-small domain, of ClpB protein NI17_013610 PF06689 ClpX C4-type zinc finger NI17_013615 PF00574 Clp protease NI17_013620 PF00574 Clp protease NI17_013625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NI17_013625 PF05697 Bacterial trigger factor protein (TF) NI17_013625 PF05698 Bacterial trigger factor protein (TF) C-terminus NI17_013640 PF01467 Cytidylyltransferase-like NI17_013640 PF00294 pfkB family carbohydrate kinase NI17_013645 PF00005 ABC transporter NI17_013645 PF00664 ABC transporter transmembrane region NI17_013660 PF01769 Divalent cation transporter NI17_013660 PF00571 CBS domain NI17_013660 PF03448 MgtE intracellular N domain NI17_013665 PF13581 Histidine kinase-like ATPase domain NI17_013665 PF08448 PAS fold NI17_013665 PF07228 Stage II sporulation protein E (SpoIIE) NI17_013665 PF13466 STAS domain NI17_013670 PF13530 Sterol carrier protein domain NI17_013670 PF17668 Acetyltransferase (GNAT) domain NI17_013675 PF02502 Ribose/Galactose Isomerase NI17_013690 PF01323 DSBA-like thioredoxin domain NI17_013695 PF11838 ERAP1-like C-terminal domain NI17_013695 PF01433 Peptidase family M1 domain NI17_013700 PF02446 4-alpha-glucanotransferase NI17_013710 PF01425 Amidase NI17_013720 PF00920 Dehydratase family NI17_013735 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NI17_013735 PF00326 Prolyl oligopeptidase family NI17_013745 PF07690 Major Facilitator Superfamily NI17_013750 PF01152 Bacterial-like globin NI17_013755 PF12848 ABC transporter NI17_013755 PF00005 ABC transporter NI17_013765 PF00990 Diguanylate cyclase, GGDEF domain NI17_013780 PF14824 Sirohaem biosynthesis protein central NI17_013780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_013780 PF10414 Sirohaem synthase dimerisation region NI17_013785 PF02277 Phosphoribosyltransferase NI17_013790 PF00155 Aminotransferase class I and II NI17_013810 PF00069 Protein kinase domain NI17_013810 PF00400 WD domain, G-beta repeat NI17_013815 PF08240 Alcohol dehydrogenase GroES-like domain NI17_013815 PF00107 Zinc-binding dehydrogenase NI17_013820 PF01145 SPFH domain / Band 7 family NI17_013830 PF03186 CobD/Cbib protein NI17_013840 PF00296 Luciferase-like monooxygenase NI17_013845 PF03358 NADPH-dependent FMN reductase NI17_013850 PF01613 Flavin reductase like domain NI17_013855 PF00205 Thiamine pyrophosphate enzyme, central domain NI17_013855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_013855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_013865 PF00528 Binding-protein-dependent transport system inner membrane component NI17_013870 PF00528 Binding-protein-dependent transport system inner membrane component NI17_013875 PF00005 ABC transporter NI17_013875 PF08402 TOBE domain NI17_013895 PF00596 Class II Aldolase and Adducin N-terminal domain NI17_013905 PF07730 Histidine kinase NI17_013910 PF00072 Response regulator receiver domain NI17_013910 PF00196 Bacterial regulatory proteins, luxR family NI17_013920 PF03994 Domain of Unknown Function (DUF350) NI17_013945 PF13404 AsnC-type helix-turn-helix domain NI17_013945 PF01037 Lrp/AsnC ligand binding domain NI17_013955 PF01048 Phosphorylase superfamily NI17_013970 PF07690 Major Facilitator Superfamily NI17_013980 PF00501 AMP-binding enzyme NI17_013980 PF13193 AMP-binding enzyme C-terminal domain NI17_013985 PF00155 Aminotransferase class I and II NI17_013995 PF13472 GDSL-like Lipase/Acylhydrolase family NI17_014000 PF00202 Aminotransferase class-III NI17_014010 PF13193 AMP-binding enzyme C-terminal domain NI17_014010 PF00501 AMP-binding enzyme NI17_014020 PF08543 Phosphomethylpyrimidine kinase NI17_014025 PF01235 Sodium:alanine symporter family NI17_014035 PF13439 Glycosyltransferase Family 4 NI17_014035 PF00534 Glycosyl transferases group 1 NI17_014040 PF00155 Aminotransferase class I and II NI17_014045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_014045 PF03466 LysR substrate binding domain NI17_014060 PF13439 Glycosyltransferase Family 4 NI17_014060 PF00534 Glycosyl transferases group 1 NI17_014070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NI17_014070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NI17_014070 PF01842 ACT domain NI17_014085 PF00877 NlpC/P60 family NI17_014090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NI17_014095 PF00781 Diacylglycerol kinase catalytic domain NI17_014100 PF00588 SpoU rRNA Methylase family NI17_014125 PF00929 Exonuclease NI17_014145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NI17_014155 PF00437 Type II/IV secretion system protein NI17_014170 PF07730 Histidine kinase NI17_014175 PF00072 Response regulator receiver domain NI17_014175 PF00196 Bacterial regulatory proteins, luxR family NI17_014190 PF00691 OmpA family NI17_014190 PF04972 BON domain NI17_014195 PF00877 NlpC/P60 family NI17_014205 PF13614 AAA domain NI17_014220 PF00005 ABC transporter NI17_014220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NI17_014225 PF00528 Binding-protein-dependent transport system inner membrane component NI17_014225 PF12911 N-terminal TM domain of oligopeptide transport permease C NI17_014230 PF00248 Aldo/keto reductase family NI17_014250 PF00873 AcrB/AcrD/AcrF family NI17_014265 PF01022 Bacterial regulatory protein, arsR family NI17_014270 PF01545 Cation efflux family NI17_014275 PF06965 Na+/H+ antiporter 1 NI17_014280 PF02386 Cation transport protein NI17_014285 PF02080 TrkA-C domain NI17_014285 PF02254 TrkA-N domain NI17_014315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_014315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_014315 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_014320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_014320 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_014320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_014330 PF02361 Cobalt transport protein NI17_014335 PF00005 ABC transporter NI17_014340 PF02632 BioY family NI17_014345 PF10282 Lactonase, 7-bladed beta-propeller NI17_014350 PF00975 Thioesterase domain NI17_014350 PF00501 AMP-binding enzyme NI17_014350 PF00550 Phosphopantetheine attachment site NI17_014350 PF00668 Condensation domain NI17_014350 PF13193 AMP-binding enzyme C-terminal domain NI17_014365 PF03259 Roadblock/LC7 domain NI17_014375 PF00270 DEAD/DEAH box helicase NI17_014375 PF11898 Domain of unknown function (DUF3418) NI17_014375 PF00271 Helicase conserved C-terminal domain NI17_014375 PF04408 Helicase associated domain (HA2) NI17_014375 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NI17_014390 PF00069 Protein kinase domain NI17_014390 PF00400 WD domain, G-beta repeat NI17_014400 PF07690 Major Facilitator Superfamily NI17_014430 PF01380 SIS domain NI17_014430 PF01418 Helix-turn-helix domain, rpiR family NI17_014435 PF01380 SIS domain NI17_014440 PF02698 DUF218 domain NI17_014450 PF08240 Alcohol dehydrogenase GroES-like domain NI17_014450 PF00107 Zinc-binding dehydrogenase NI17_014470 PF12680 SnoaL-like domain NI17_014470 PF08281 Sigma-70, region 4 NI17_014470 PF04542 Sigma-70 region 2 NI17_014485 PF00199 Catalase NI17_014485 PF06628 Catalase-related immune-responsive NI17_014495 PF00580 UvrD/REP helicase N-terminal domain NI17_014495 PF13361 UvrD-like helicase C-terminal domain NI17_014495 PF12462 DNA helicase IV / RNA helicase N terminal NI17_014520 PF05199 GMC oxidoreductase NI17_014540 PF17042 Nucleotide-binding C-terminal domain NI17_014540 PF07005 Sugar-binding N-terminal domain NI17_014545 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NI17_014545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NI17_014550 PF00004 ATPase family associated with various cellular activities (AAA) NI17_014550 PF02190 ATP-dependent protease La (LON) substrate-binding domain NI17_014550 PF05362 Lon protease (S16) C-terminal proteolytic domain NI17_014555 PF01547 Bacterial extracellular solute-binding protein NI17_014560 PF00528 Binding-protein-dependent transport system inner membrane component NI17_014565 PF00528 Binding-protein-dependent transport system inner membrane component NI17_014570 PF03881 Fructosamine kinase NI17_014575 PF01451 Low molecular weight phosphotyrosine protein phosphatase NI17_014580 PF00072 Response regulator receiver domain NI17_014585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_014585 PF00512 His Kinase A (phospho-acceptor) domain NI17_014585 PF08446 PAS fold NI17_014585 PF01590 GAF domain NI17_014585 PF00360 Phytochrome region NI17_014590 PF00072 Response regulator receiver domain NI17_014590 PF00486 Transcriptional regulatory protein, C terminal NI17_014595 PF01126 Heme oxygenase NI17_014615 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_014615 PF14759 Reductase C-terminal NI17_014620 PF00561 alpha/beta hydrolase fold NI17_014625 PF00793 DAHP synthetase I family NI17_014630 PF01571 Aminomethyltransferase folate-binding domain NI17_014630 PF08669 Glycine cleavage T-protein C-terminal barrel domain NI17_014635 PF01597 Glycine cleavage H-protein NI17_014640 PF00464 Serine hydroxymethyltransferase NI17_014660 PF00551 Formyl transferase NI17_014680 PF00578 AhpC/TSA family NI17_014690 PF03793 PASTA domain NI17_014690 PF00069 Protein kinase domain NI17_014700 PF00675 Insulinase (Peptidase family M16) NI17_014720 PF01725 Ham1 family NI17_014725 PF01138 3' exoribonuclease family, domain 1 NI17_014725 PF03725 3' exoribonuclease family, domain 2 NI17_014730 PF12706 Beta-lactamase superfamily domain NI17_014740 PF00291 Pyridoxal-phosphate dependent enzyme NI17_014745 PF02597 ThiS family NI17_014750 PF14464 Prokaryotic homologs of the JAB domain NI17_014760 PF02617 ATP-dependent Clp protease adaptor protein ClpS NI17_014765 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NI17_014765 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NI17_014770 PF00857 Isochorismatase family NI17_014775 PF00579 tRNA synthetases class I (W and Y) NI17_014785 PF04851 Type III restriction enzyme, res subunit NI17_014805 PF02622 Uncharacterized ACR, COG1678 NI17_014810 PF00390 Malic enzyme, N-terminal domain NI17_014810 PF03949 Malic enzyme, NAD binding domain NI17_014815 PF00085 Thioredoxin NI17_014825 PF00108 Thiolase, N-terminal domain NI17_014825 PF02803 Thiolase, C-terminal domain NI17_014850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NI17_014850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NI17_014860 PF01939 Endonuclease NucS NI17_014875 PF04389 Peptidase family M28 NI17_014875 PF02225 PA domain NI17_014880 PF01039 Carboxyl transferase domain NI17_014890 PF01923 Cobalamin adenosyltransferase NI17_014895 PF10739 Protein of unknown function (DUF2550) NI17_014900 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NI17_014905 PF02874 ATP synthase alpha/beta family, beta-barrel domain NI17_014905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NI17_014910 PF00231 ATP synthase NI17_014915 PF02874 ATP synthase alpha/beta family, beta-barrel domain NI17_014915 PF00306 ATP synthase alpha/beta chain, C terminal domain NI17_014915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NI17_014920 PF00213 ATP synthase delta (OSCP) subunit NI17_014925 PF00430 ATP synthase B/B' CF(0) NI17_014930 PF00137 ATP synthase subunit C NI17_014935 PF00119 ATP synthase A chain NI17_014950 PF00953 Glycosyl transferase family 4 NI17_014955 PF01300 Telomere recombination NI17_014960 PF13649 Methyltransferase domain NI17_014960 PF17827 PrmC N-terminal domain NI17_014965 PF00472 RF-1 domain NI17_014965 PF03462 PCRF domain NI17_014970 PF01197 Ribosomal protein L31 NI17_014975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NI17_014975 PF07497 Rho termination factor, RNA-binding domain NI17_014975 PF07498 Rho termination factor, N-terminal domain NI17_014975 PF07497 Rho termination factor, RNA-binding domain NI17_014975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NI17_014975 PF07498 Rho termination factor, N-terminal domain NI17_014980 PF00288 GHMP kinases N terminal domain NI17_014985 PF00291 Pyridoxal-phosphate dependent enzyme NI17_014990 PF01842 ACT domain NI17_014990 PF00742 Homoserine dehydrogenase NI17_014990 PF03447 Homoserine dehydrogenase, NAD binding domain NI17_014995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NI17_014995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NI17_015000 PF05746 DALR anticodon binding domain NI17_015000 PF00750 tRNA synthetases class I (R) NI17_015000 PF03485 Arginyl tRNA synthetase N terminal domain NI17_015005 PF00072 Response regulator receiver domain NI17_015005 PF00486 Transcriptional regulatory protein, C terminal NI17_015015 PF00135 Carboxylesterase family NI17_015045 PF01327 Polypeptide deformylase NI17_015055 PF03144 Elongation factor Tu domain 2 NI17_015055 PF00009 Elongation factor Tu GTP binding domain NI17_015055 PF03764 Elongation factor G, domain IV NI17_015055 PF14492 Elongation Factor G, domain II NI17_015055 PF00679 Elongation factor G C-terminus NI17_015065 PF07687 Peptidase dimerisation domain NI17_015065 PF01546 Peptidase family M20/M25/M40 NI17_015075 PF00571 CBS domain NI17_015075 PF00478 IMP dehydrogenase / GMP reductase domain NI17_015115 PF04851 Type III restriction enzyme, res subunit NI17_015115 PF00271 Helicase conserved C-terminal domain NI17_015120 PF13183 4Fe-4S dicluster domain NI17_015120 PF13085 2Fe-2S iron-sulfur cluster binding domain NI17_015125 PF00890 FAD binding domain NI17_015125 PF02910 Fumarate reductase flavoprotein C-term NI17_015135 PF03466 LysR substrate binding domain NI17_015135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_015140 PF01494 FAD binding domain NI17_015145 PF00679 Elongation factor G C-terminus NI17_015145 PF14492 Elongation Factor G, domain II NI17_015145 PF00009 Elongation factor Tu GTP binding domain NI17_015145 PF03144 Elongation factor Tu domain 2 NI17_015150 PF00293 NUDIX domain NI17_015165 PF01979 Amidohydrolase family NI17_015175 PF01910 Thiamine-binding protein NI17_015190 PF01668 SmpB protein NI17_015195 PF18075 FtsX extracellular domain NI17_015195 PF02687 FtsX-like permease family NI17_015200 PF00005 ABC transporter NI17_015205 PF00472 RF-1 domain NI17_015205 PF03462 PCRF domain NI17_015215 PF05088 Bacterial NAD-glutamate dehydrogenase NI17_015230 PF13419 Haloacid dehalogenase-like hydrolase NI17_015235 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_015235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_015235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_015240 PF01915 Glycosyl hydrolase family 3 C-terminal domain NI17_015240 PF00933 Glycosyl hydrolase family 3 N terminal domain NI17_015255 PF13419 Haloacid dehalogenase-like hydrolase NI17_015260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NI17_015265 PF02810 SEC-C motif NI17_015265 PF01043 SecA preprotein cross-linking domain NI17_015265 PF07516 SecA Wing and Scaffold domain NI17_015265 PF07517 SecA DEAD-like domain NI17_015270 PF00072 Response regulator receiver domain NI17_015270 PF00196 Bacterial regulatory proteins, luxR family NI17_015275 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NI17_015275 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NI17_015285 PF10646 Sporulation and spore germination NI17_015285 PF10647 Lipoprotein LpqB beta-propeller domain NI17_015290 PF00672 HAMP domain NI17_015290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_015290 PF00512 His Kinase A (phospho-acceptor) domain NI17_015295 PF00486 Transcriptional regulatory protein, C terminal NI17_015295 PF00072 Response regulator receiver domain NI17_015310 PF14258 Domain of unknown function (DUF4350) NI17_015315 PF07726 ATPase family associated with various cellular activities (AAA) NI17_015315 PF17863 AAA lid domain NI17_015335 PF05221 S-adenosyl-L-homocysteine hydrolase NI17_015335 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NI17_015345 PF00400 WD domain, G-beta repeat NI17_015345 PF00069 Protein kinase domain NI17_015355 PF03966 Trm112p-like protein NI17_015360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NI17_015360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NI17_015360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NI17_015360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NI17_015380 PF00534 Glycosyl transferases group 1 NI17_015380 PF00535 Glycosyl transferase family 2 NI17_015385 PF02467 Transcription factor WhiB NI17_015395 PF01933 Uncharacterised protein family UPF0052 NI17_015400 PF01996 F420-0:Gamma-glutamyl ligase NI17_015400 PF00881 Nitroreductase family NI17_015405 PF04055 Radical SAM superfamily NI17_015410 PF01209 ubiE/COQ5 methyltransferase family NI17_015420 PF07702 UTRA domain NI17_015420 PF00392 Bacterial regulatory proteins, gntR family NI17_015495 PF03816 Cell envelope-related transcriptional attenuator domain NI17_015540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NI17_015540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NI17_015540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NI17_015575 PF00005 ABC transporter NI17_015580 PF01061 ABC-2 type transporter NI17_015585 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NI17_015600 PF03816 Cell envelope-related transcriptional attenuator domain NI17_015610 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NI17_015610 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NI17_015610 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NI17_015615 PF13380 CoA binding domain NI17_015620 PF00731 AIR carboxylase NI17_015625 PF02222 ATP-grasp domain NI17_015625 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NI17_015635 PF00486 Transcriptional regulatory protein, C terminal NI17_015635 PF00072 Response regulator receiver domain NI17_015640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_015640 PF00512 His Kinase A (phospho-acceptor) domain NI17_015645 PF00753 Metallo-beta-lactamase superfamily NI17_015650 PF16701 Adenylate cyclase regulatory domain NI17_015650 PF00211 Adenylate and Guanylate cyclase catalytic domain NI17_015655 PF08279 HTH domain NI17_015655 PF03099 Biotin/lipoate A/B protein ligase family NI17_015655 PF02237 Biotin protein ligase C terminal domain NI17_015660 PF00311 Phosphoenolpyruvate carboxylase NI17_015665 PF01039 Carboxyl transferase domain NI17_015675 PF02785 Biotin carboxylase C-terminal domain NI17_015675 PF00289 Biotin carboxylase, N-terminal domain NI17_015675 PF00364 Biotin-requiring enzyme NI17_015675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NI17_015720 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_015720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NI17_015735 PF00962 Adenosine/AMP deaminase NI17_015740 PF04107 Glutamate-cysteine ligase family 2(GCS2) NI17_015740 PF01546 Peptidase family M20/M25/M40 NI17_015745 PF04107 Glutamate-cysteine ligase family 2(GCS2) NI17_015750 PF08544 GHMP kinases C terminal NI17_015750 PF00288 GHMP kinases N terminal domain NI17_015750 PF10509 Galactokinase galactose-binding signature NI17_015755 PF03816 Cell envelope-related transcriptional attenuator domain NI17_015760 PF00180 Isocitrate/isopropylmalate dehydrogenase NI17_015775 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NI17_015775 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NI17_015780 PF01808 AICARFT/IMPCHase bienzyme NI17_015780 PF02142 MGS-like domain NI17_015785 PF00551 Formyl transferase NI17_015800 PF02629 CoA binding domain NI17_015800 PF00549 CoA-ligase NI17_015805 PF08442 ATP-grasp domain NI17_015805 PF00549 CoA-ligase NI17_015810 PF01925 Sulfite exporter TauE/SafE NI17_015835 PF00580 UvrD/REP helicase N-terminal domain NI17_015835 PF13361 UvrD-like helicase C-terminal domain NI17_015840 PF01156 Inosine-uridine preferring nucleoside hydrolase NI17_015845 PF00072 Response regulator receiver domain NI17_015845 PF00196 Bacterial regulatory proteins, luxR family NI17_015850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_015850 PF07730 Histidine kinase NI17_015865 PF01799 [2Fe-2S] binding domain NI17_015865 PF00111 2Fe-2S iron-sulfur cluster binding domain NI17_015870 PF03450 CO dehydrogenase flavoprotein C-terminal domain NI17_015870 PF00941 FAD binding domain in molybdopterin dehydrogenase NI17_015885 PF00117 Glutamine amidotransferase class-I NI17_015885 PF00958 GMP synthase C terminal domain NI17_015885 PF02540 NAD synthase NI17_015890 PF00171 Aldehyde dehydrogenase family NI17_015895 PF01494 FAD binding domain NI17_015900 PF16363 GDP-mannose 4,6 dehydratase NI17_015910 PF00149 Calcineurin-like phosphoesterase NI17_015915 PF01266 FAD dependent oxidoreductase NI17_015915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NI17_015925 PF00478 IMP dehydrogenase / GMP reductase domain NI17_015930 PF00478 IMP dehydrogenase / GMP reductase domain NI17_015930 PF00571 CBS domain NI17_015935 PF04542 Sigma-70 region 2 NI17_015935 PF04545 Sigma-70, region 4 NI17_015940 PF00118 TCP-1/cpn60 chaperonin family NI17_015945 PF00166 Chaperonin 10 Kd subunit NI17_015970 PF00814 Glycoprotease family NI17_015980 PF00814 Glycoprotease family NI17_015985 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NI17_015990 PF01168 Alanine racemase, N-terminal domain NI17_015990 PF00842 Alanine racemase, C-terminal domain NI17_016010 PF01256 Carbohydrate kinase NI17_016010 PF03853 YjeF-related protein N-terminus NI17_016020 PF00485 Phosphoribulokinase / Uridine kinase family NI17_016030 PF01380 SIS domain NI17_016035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NI17_016035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NI17_016035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NI17_016035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NI17_016040 PF00380 Ribosomal protein S9/S16 NI17_016045 PF00572 Ribosomal protein L13 NI17_016055 PF01416 tRNA pseudouridine synthase NI17_016060 PF01196 Ribosomal protein L17 NI17_016065 PF01000 RNA polymerase Rpb3/RpoA insert domain NI17_016065 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NI17_016065 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NI17_016070 PF00411 Ribosomal protein S11 NI17_016075 PF00416 Ribosomal protein S13/S18 NI17_016080 PF00444 Ribosomal protein L36 NI17_016085 PF01176 Translation initiation factor 1A / IF-1 NI17_016095 PF00557 Metallopeptidase family M24 NI17_016105 PF00344 SecY translocase NI17_016110 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NI17_016115 PF00327 Ribosomal protein L30p/L7e NI17_016120 PF00333 Ribosomal protein S5, N-terminal domain NI17_016120 PF03719 Ribosomal protein S5, C-terminal domain NI17_016125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NI17_016130 PF00347 Ribosomal protein L6 NI17_016135 PF00410 Ribosomal protein S8 NI17_016140 PF00253 Ribosomal protein S14p/S29e NI17_016145 PF00281 Ribosomal protein L5 NI17_016145 PF00673 ribosomal L5P family C-terminus NI17_016150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NI17_016150 PF00467 KOW motif NI17_016155 PF00238 Ribosomal protein L14p/L23e NI17_016160 PF00366 Ribosomal protein S17 NI17_016165 PF00831 Ribosomal L29 protein NI17_016170 PF00252 Ribosomal protein L16p/L10e NI17_016175 PF07650 KH domain NI17_016175 PF00189 Ribosomal protein S3, C-terminal domain NI17_016180 PF00237 Ribosomal protein L22p/L17e NI17_016185 PF00203 Ribosomal protein S19 NI17_016190 PF03947 Ribosomal Proteins L2, C-terminal domain NI17_016190 PF00181 Ribosomal Proteins L2, RNA binding domain NI17_016195 PF00276 Ribosomal protein L23 NI17_016200 PF00573 Ribosomal protein L4/L1 family NI17_016205 PF00297 Ribosomal protein L3 NI17_016210 PF00338 Ribosomal protein S10p/S20e NI17_016215 PF03143 Elongation factor Tu C-terminal domain NI17_016215 PF03144 Elongation factor Tu domain 2 NI17_016215 PF00009 Elongation factor Tu GTP binding domain NI17_016220 PF00679 Elongation factor G C-terminus NI17_016220 PF14492 Elongation Factor G, domain II NI17_016220 PF03764 Elongation factor G, domain IV NI17_016220 PF00009 Elongation factor Tu GTP binding domain NI17_016220 PF03144 Elongation factor Tu domain 2 NI17_016225 PF00177 Ribosomal protein S7p/S5e NI17_016230 PF00164 Ribosomal protein S12/S23 NI17_016240 PF04998 RNA polymerase Rpb1, domain 5 NI17_016240 PF04997 RNA polymerase Rpb1, domain 1 NI17_016240 PF00623 RNA polymerase Rpb1, domain 2 NI17_016240 PF04983 RNA polymerase Rpb1, domain 3 NI17_016240 PF05000 RNA polymerase Rpb1, domain 4 NI17_016245 PF04563 RNA polymerase beta subunit NI17_016245 PF00562 RNA polymerase Rpb2, domain 6 NI17_016245 PF10385 RNA polymerase beta subunit external 1 domain NI17_016245 PF04560 RNA polymerase Rpb2, domain 7 NI17_016245 PF04565 RNA polymerase Rpb2, domain 3 NI17_016245 PF04561 RNA polymerase Rpb2, domain 2 NI17_016255 PF00542 Ribosomal protein L7/L12 C-terminal domain NI17_016255 PF16320 Ribosomal protein L7/L12 dimerisation domain NI17_016260 PF00466 Ribosomal protein L10 NI17_016270 PF00687 Ribosomal protein L1p/L10e family NI17_016275 PF03946 Ribosomal protein L11, N-terminal domain NI17_016275 PF00298 Ribosomal protein L11, RNA binding domain NI17_016280 PF02357 Transcription termination factor nusG NI17_016285 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NI17_016295 PF00155 Aminotransferase class I and II NI17_016300 PF00962 Adenosine/AMP deaminase NI17_016305 PF01169 Uncharacterized protein family UPF0016 NI17_016310 PF01565 FAD binding domain NI17_016310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NI17_016320 PF13452 N-terminal half of MaoC dehydratase NI17_016325 PF00471 Ribosomal protein L33 NI17_016340 PF13476 AAA domain NI17_016365 PF00440 Bacterial regulatory proteins, tetR family NI17_016365 PF16859 Tetracyclin repressor-like, C-terminal domain NI17_016370 PF00106 short chain dehydrogenase NI17_016380 PF04461 Protein of unknown function (DUF520) NI17_016385 PF01435 Peptidase family M48 NI17_016390 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NI17_016390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NI17_016390 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NI17_016395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_016400 PF01569 PAP2 superfamily NI17_016405 PF13460 NAD(P)H-binding NI17_016420 PF13411 MerR HTH family regulatory protein NI17_016425 PF12680 SnoaL-like domain NI17_016425 PF08281 Sigma-70, region 4 NI17_016425 PF04542 Sigma-70 region 2 NI17_016435 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NI17_016440 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NI17_016445 PF01625 Peptide methionine sulfoxide reductase NI17_016450 PF00892 EamA-like transporter family NI17_016460 PF00348 Polyprenyl synthetase NI17_016465 PF00361 Proton-conducting membrane transporter NI17_016470 PF00361 Proton-conducting membrane transporter NI17_016475 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NI17_016475 PF00361 Proton-conducting membrane transporter NI17_016480 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NI17_016485 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NI17_016490 PF12838 4Fe-4S dicluster domain NI17_016495 PF00146 NADH dehydrogenase NI17_016500 PF00384 Molybdopterin oxidoreductase NI17_016500 PF01568 Molydopterin dinucleotide binding domain NI17_016500 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NI17_016505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NI17_016505 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NI17_016505 PF10531 SLBB domain NI17_016515 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NI17_016520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NI17_016525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NI17_016530 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NI17_016535 PF01494 FAD binding domain NI17_016540 PF01209 ubiE/COQ5 methyltransferase family NI17_016560 PF01578 Cytochrome C assembly protein NI17_016570 PF02683 Cytochrome C biogenesis protein transmembrane region NI17_016575 PF00578 AhpC/TSA family NI17_016580 PF12728 Helix-turn-helix domain NI17_016585 PF15698 Phosphatase NI17_016590 PF00850 Histone deacetylase domain NI17_016595 PF03807 NADP oxidoreductase coenzyme F420-dependent NI17_016595 PF14748 Pyrroline-5-carboxylate reductase dimerisation NI17_016605 PF01261 Xylose isomerase-like TIM barrel NI17_016615 PF06745 KaiC NI17_016615 PF18073 Rubredoxin metal binding domain NI17_016620 PF00041 Fibronectin type III domain NI17_016620 PF00150 Cellulase (glycosyl hydrolase family 5) NI17_016620 PF00553 Cellulose binding domain NI17_016625 PF07685 CobB/CobQ-like glutamine amidotransferase domain NI17_016655 PF00581 Rhodanese-like domain NI17_016675 PF01370 NAD dependent epimerase/dehydratase family NI17_016685 PF00300 Histidine phosphatase superfamily (branch 1) NI17_016690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_016690 PF03466 LysR substrate binding domain NI17_016695 PF00202 Aminotransferase class-III NI17_016700 PF03737 Aldolase/RraA NI17_016715 PF00490 Delta-aminolevulinic acid dehydratase NI17_016720 PF14824 Sirohaem biosynthesis protein central NI17_016720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_016720 PF10414 Sirohaem synthase dimerisation region NI17_016725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NI17_016725 PF03900 Porphobilinogen deaminase, C-terminal domain NI17_016730 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NI17_016730 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NI17_016730 PF01488 Shikimate / quinate 5-dehydrogenase NI17_016735 PF02629 CoA binding domain NI17_016735 PF06971 Putative DNA-binding protein N-terminus NI17_016750 PF00486 Transcriptional regulatory protein, C terminal NI17_016760 PF00583 Acetyltransferase (GNAT) family NI17_016760 PF13508 Acetyltransferase (GNAT) domain NI17_016765 PF12849 PBP superfamily domain NI17_016770 PF00528 Binding-protein-dependent transport system inner membrane component NI17_016775 PF00528 Binding-protein-dependent transport system inner membrane component NI17_016780 PF00005 ABC transporter NI17_016785 PF01384 Phosphate transporter family NI17_016800 PF00156 Phosphoribosyl transferase domain NI17_016805 PF00586 AIR synthase related protein, N-terminal domain NI17_016805 PF02769 AIR synthase related protein, C-terminal domain NI17_016840 PF08361 MAATS-type transcriptional repressor, C-terminal region NI17_016840 PF00440 Bacterial regulatory proteins, tetR family NI17_016850 PF09186 Domain of unknown function (DUF1949) NI17_016850 PF01205 Uncharacterized protein family UPF0029 NI17_016855 PF00293 NUDIX domain NI17_016860 PF00255 Glutathione peroxidase NI17_016870 PF01642 Methylmalonyl-CoA mutase NI17_016875 PF01642 Methylmalonyl-CoA mutase NI17_016875 PF02310 B12 binding domain NI17_016890 PF00391 PEP-utilising enzyme, mobile domain NI17_016890 PF02896 PEP-utilising enzyme, TIM barrel domain NI17_016890 PF05524 PEP-utilising enzyme, N-terminal NI17_016915 PF02056 Family 4 glycosyl hydrolase NI17_016915 PF11975 Family 4 glycosyl hydrolase C-terminal domain NI17_016925 PF00085 Thioredoxin NI17_016930 PF08240 Alcohol dehydrogenase GroES-like domain NI17_016930 PF00107 Zinc-binding dehydrogenase NI17_016955 PF04127 DNA / pantothenate metabolism flavoprotein NI17_016955 PF02441 Flavoprotein NI17_016975 PF00392 Bacterial regulatory proteins, gntR family NI17_016975 PF07702 UTRA domain NI17_016990 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NI17_016990 PF17854 FtsK alpha domain NI17_016990 PF09397 Ftsk gamma domain NI17_016990 PF01580 FtsK/SpoIIIE family NI17_017000 PF12728 Helix-turn-helix domain NI17_017005 PF14659 Phage integrase, N-terminal SAM-like domain NI17_017005 PF00589 Phage integrase family NI17_017020 PF00561 alpha/beta hydrolase fold NI17_017025 PF04468 PSP1 C-terminal conserved region NI17_017030 PF12169 DNA polymerase III subunits gamma and tau domain III NI17_017045 PF02223 Thymidylate kinase NI17_017050 PF01131 DNA topoisomerase NI17_017050 PF01751 Toprim domain NI17_017050 PF13368 Topoisomerase C-terminal repeat NI17_017065 PF07687 Peptidase dimerisation domain NI17_017065 PF01546 Peptidase family M20/M25/M40 NI17_017080 PF01522 Polysaccharide deacetylase NI17_017090 PF00356 Bacterial regulatory proteins, lacI family NI17_017095 PF03422 Carbohydrate binding module (family 6) NI17_017095 PF00404 Dockerin type I domain NI17_017095 PF00756 Putative esterase NI17_017095 PF00331 Glycosyl hydrolase family 10 NI17_017105 PF13559 Domain of unknown function (DUF4129) NI17_017105 PF01841 Transglutaminase-like superfamily NI17_017105 PF11992 Domain of unknown function (DUF3488) NI17_017115 PF07726 ATPase family associated with various cellular activities (AAA) NI17_017115 PF17863 AAA lid domain NI17_017130 PF13439 Glycosyltransferase Family 4 NI17_017130 PF00534 Glycosyl transferases group 1 NI17_017230 PF07690 Major Facilitator Superfamily NI17_017235 PF02665 Nitrate reductase gamma subunit NI17_017235 PF00384 Molybdopterin oxidoreductase NI17_017235 PF02613 Nitrate reductase delta subunit NI17_017240 PF02613 Nitrate reductase delta subunit NI17_017240 PF00384 Molybdopterin oxidoreductase NI17_017240 PF02665 Nitrate reductase gamma subunit NI17_017245 PF13247 4Fe-4S dicluster domain NI17_017245 PF14711 Respiratory nitrate reductase beta C-terminal NI17_017250 PF01568 Molydopterin dinucleotide binding domain NI17_017250 PF00384 Molybdopterin oxidoreductase NI17_017260 PF07732 Multicopper oxidase NI17_017300 PF01266 FAD dependent oxidoreductase NI17_017305 PF17853 GGDEF-like domain NI17_017305 PF13556 PucR C-terminal helix-turn-helix domain NI17_017310 PF17932 Tetracyclin repressor-like, C-terminal domain NI17_017310 PF00440 Bacterial regulatory proteins, tetR family NI17_017330 PF00701 Dihydrodipicolinate synthetase family NI17_017365 PF00270 DEAD/DEAH box helicase NI17_017365 PF00271 Helicase conserved C-terminal domain NI17_017365 PF08494 DEAD/H associated NI17_017380 PF00271 Helicase conserved C-terminal domain NI17_017380 PF12137 RNA polymerase recycling family C-terminal NI17_017380 PF00176 SNF2 family N-terminal domain NI17_017380 PF18339 RapA N-terminal Tudor like domain 1 NI17_017380 PF18337 RapA N-terminal Tudor like domain NI17_017425 PF09278 MerR, DNA binding NI17_017425 PF00376 MerR family regulatory protein NI17_017470 PF00486 Transcriptional regulatory protein, C terminal NI17_017470 PF03704 Bacterial transcriptional activator domain NI17_017470 PF00931 NB-ARC domain NI17_017525 PF05175 Methyltransferase small domain NI17_017530 PF03793 PASTA domain NI17_017530 PF00069 Protein kinase domain NI17_017535 PF13361 UvrD-like helicase C-terminal domain NI17_017535 PF00570 HRDC domain NI17_017545 PF00465 Iron-containing alcohol dehydrogenase NI17_017550 PF00067 Cytochrome P450 NI17_017555 PF00067 Cytochrome P450 NI17_017575 PF00672 HAMP domain NI17_017575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_017575 PF00512 His Kinase A (phospho-acceptor) domain NI17_017580 PF13193 AMP-binding enzyme C-terminal domain NI17_017580 PF00501 AMP-binding enzyme NI17_017585 PF13185 GAF domain NI17_017585 PF00196 Bacterial regulatory proteins, luxR family NI17_017595 PF01642 Methylmalonyl-CoA mutase NI17_017595 PF02310 B12 binding domain NI17_017605 PF00107 Zinc-binding dehydrogenase NI17_017605 PF08240 Alcohol dehydrogenase GroES-like domain NI17_017620 PF13396 Phospholipase_D-nuclease N-terminal NI17_017620 PF13091 PLD-like domain NI17_017630 PF02597 ThiS family NI17_017635 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NI17_017640 PF00690 Cation transporter/ATPase, N-terminus NI17_017640 PF00689 Cation transporting ATPase, C-terminus NI17_017650 PF00561 alpha/beta hydrolase fold NI17_017655 PF01053 Cys/Met metabolism PLP-dependent enzyme NI17_017660 PF00196 Bacterial regulatory proteins, luxR family NI17_017670 PF02754 Cysteine-rich domain NI17_017675 PF11870 Domain of unknown function (DUF3390) NI17_017675 PF13183 4Fe-4S dicluster domain NI17_017675 PF02589 LUD domain NI17_017680 PF02589 LUD domain NI17_017705 PF13183 4Fe-4S dicluster domain NI17_017705 PF01565 FAD binding domain NI17_017705 PF02913 FAD linked oxidases, C-terminal domain NI17_017710 PF00069 Protein kinase domain NI17_017720 PF00004 ATPase family associated with various cellular activities (AAA) NI17_017720 PF05362 Lon protease (S16) C-terminal proteolytic domain NI17_017725 PF00403 Heavy-metal-associated domain NI17_017800 PF01235 Sodium:alanine symporter family NI17_017810 PF07729 FCD domain NI17_017810 PF00392 Bacterial regulatory proteins, gntR family NI17_017815 PF00486 Transcriptional regulatory protein, C terminal NI17_017815 PF00931 NB-ARC domain NI17_017815 PF03704 Bacterial transcriptional activator domain NI17_017820 PF07690 Major Facilitator Superfamily NI17_017825 PF00561 alpha/beta hydrolase fold NI17_017835 PF08031 Berberine and berberine like NI17_017835 PF01565 FAD binding domain NI17_017845 PF08659 KR domain NI17_017845 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_017845 PF16197 Ketoacyl-synthetase C-terminal extension NI17_017845 PF00698 Acyl transferase domain NI17_017845 PF00550 Phosphopantetheine attachment site NI17_017845 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_017850 PF07690 Major Facilitator Superfamily NI17_017855 PF14765 Polyketide synthase dehydratase NI17_017855 PF16197 Ketoacyl-synthetase C-terminal extension NI17_017855 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_017855 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_017855 PF00698 Acyl transferase domain NI17_017855 PF08659 KR domain NI17_017855 PF08240 Alcohol dehydrogenase GroES-like domain NI17_017855 PF00550 Phosphopantetheine attachment site NI17_017860 PF00931 NB-ARC domain NI17_017860 PF00486 Transcriptional regulatory protein, C terminal NI17_017860 PF03704 Bacterial transcriptional activator domain NI17_017865 PF16177 Acetyl-coenzyme A synthetase N-terminus NI17_017865 PF13193 AMP-binding enzyme C-terminal domain NI17_017865 PF00501 AMP-binding enzyme NI17_017870 PF07694 5TMR of 5TMR-LYT NI17_017870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_017870 PF06580 Histidine kinase NI17_017875 PF04397 LytTr DNA-binding domain NI17_017875 PF00072 Response regulator receiver domain NI17_017885 PF00474 Sodium:solute symporter family NI17_017895 PF00474 Sodium:solute symporter family NI17_017900 PF01022 Bacterial regulatory protein, arsR family NI17_017905 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_017920 PF00486 Transcriptional regulatory protein, C terminal NI17_017920 PF00072 Response regulator receiver domain NI17_017925 PF01022 Bacterial regulatory protein, arsR family NI17_017930 PF01451 Low molecular weight phosphotyrosine protein phosphatase NI17_017935 PF01758 Sodium Bile acid symporter family NI17_017940 PF01451 Low molecular weight phosphotyrosine protein phosphatase NI17_017960 PF00398 Ribosomal RNA adenine dimethylase NI17_017990 PF13276 HTH-like domain NI17_017990 PF00665 Integrase core domain NI17_018005 PF13546 DDE superfamily endonuclease NI17_018050 PF00534 Glycosyl transferases group 1 NI17_018050 PF13439 Glycosyltransferase Family 4 NI17_018060 PF00795 Carbon-nitrogen hydrolase NI17_018065 PF02769 AIR synthase related protein, C-terminal domain NI17_018065 PF00586 AIR synthase related protein, N-terminal domain NI17_018110 PF17760 UvrA interaction domain NI17_018110 PF17755 UvrA DNA-binding domain NI17_018110 PF00005 ABC transporter NI17_018140 PF11774 Lsr2 NI17_018150 PF00144 Beta-lactamase NI17_018175 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NI17_018175 PF01243 Pyridoxamine 5'-phosphate oxidase NI17_018185 PF08768 Domain of unknown function (DUF1794) NI17_018190 PF01571 Aminomethyltransferase folate-binding domain NI17_018200 PF00633 Helix-hairpin-helix motif NI17_018200 PF00730 HhH-GPD superfamily base excision DNA repair protein NI17_018210 PF00004 ATPase family associated with various cellular activities (AAA) NI17_018210 PF07724 AAA domain (Cdc48 subfamily) NI17_018210 PF10431 C-terminal, D2-small domain, of ClpB protein NI17_018210 PF17871 AAA lid domain NI17_018210 PF02861 Clp amino terminal domain, pathogenicity island component NI17_018215 PF11774 Lsr2 NI17_018225 PF13361 UvrD-like helicase C-terminal domain NI17_018225 PF00580 UvrD/REP helicase N-terminal domain NI17_018230 PF00583 Acetyltransferase (GNAT) family NI17_018240 PF00152 tRNA synthetases class II (D, K and N) NI17_018240 PF01336 OB-fold nucleic acid binding domain NI17_018250 PF03309 Type III pantothenate kinase NI17_018255 PF02910 Fumarate reductase flavoprotein C-term NI17_018255 PF00890 FAD binding domain NI17_018260 PF02569 Pantoate-beta-alanine ligase NI17_018275 PF13443 Cro/C1-type HTH DNA-binding domain NI17_018310 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NI17_018315 PF02152 Dihydroneopterin aldolase NI17_018325 PF00809 Pterin binding enzyme NI17_018330 PF01227 GTP cyclohydrolase I NI17_018335 PF06480 FtsH Extracellular NI17_018335 PF01434 Peptidase family M41 NI17_018335 PF17862 AAA+ lid domain NI17_018335 PF00004 ATPase family associated with various cellular activities (AAA) NI17_018340 PF00156 Phosphoribosyl transferase domain NI17_018345 PF01171 PP-loop family NI17_018345 PF09179 TilS substrate binding domain NI17_018375 PF00719 Inorganic pyrophosphatase NI17_018380 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NI17_018390 PF07690 Major Facilitator Superfamily NI17_018395 PF02542 YgbB family NI17_018400 PF02559 CarD-like/TRCF domain NI17_018405 PF01895 PhoU domain NI17_018410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_018410 PF00512 His Kinase A (phospho-acceptor) domain NI17_018415 PF00072 Response regulator receiver domain NI17_018415 PF00486 Transcriptional regulatory protein, C terminal NI17_018420 PF00300 Histidine phosphatase superfamily (branch 1) NI17_018425 PF10722 Putative bacterial sensory transduction regulator NI17_018430 PF13439 Glycosyltransferase Family 4 NI17_018430 PF00534 Glycosyl transferases group 1 NI17_018435 PF01661 Macro domain NI17_018450 PF03965 Penicillinase repressor NI17_018455 PF01435 Peptidase family M48 NI17_018480 PF02580 D-Tyr-tRNA(Tyr) deacylase NI17_018485 PF00553 Cellulose binding domain NI17_018485 PF00331 Glycosyl hydrolase family 10 NI17_018515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NI17_018520 PF00528 Binding-protein-dependent transport system inner membrane component NI17_018525 PF00005 ABC transporter NI17_018525 PF00571 CBS domain NI17_018530 PF01694 Rhomboid family NI17_018535 PF00692 dUTPase NI17_018565 PF00561 alpha/beta hydrolase fold NI17_018570 PF03816 Cell envelope-related transcriptional attenuator domain NI17_018575 PF00106 short chain dehydrogenase NI17_018585 PF07690 Major Facilitator Superfamily NI17_018595 PF02013 Cellulose or protein binding domain NI17_018595 PF00553 Cellulose binding domain NI17_018595 PF02015 Glycosyl hydrolase family 45 NI17_018625 PF13409 Glutathione S-transferase, N-terminal domain NI17_018635 PF13460 NAD(P)H-binding NI17_018635 PF11066 Protein of unknown function (DUF2867) NI17_018650 PF00561 alpha/beta hydrolase fold NI17_018660 PF00474 Sodium:solute symporter family NI17_018670 PF00268 Ribonucleotide reductase, small chain NI17_018675 PF03477 ATP cone domain NI17_018675 PF02867 Ribonucleotide reductase, barrel domain NI17_018675 PF00317 Ribonucleotide reductase, all-alpha domain NI17_018690 PF12833 Helix-turn-helix domain NI17_018695 PF04235 Protein of unknown function (DUF418) NI17_018720 PF03091 CutA1 divalent ion tolerance protein NI17_018725 PF00156 Phosphoribosyl transferase domain NI17_018735 PF01116 Fructose-bisphosphate aldolase class-II NI17_018745 PF00709 Adenylosuccinate synthetase NI17_018750 PF02844 Phosphoribosylglycinamide synthetase, N domain NI17_018750 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NI17_018750 PF02843 Phosphoribosylglycinamide synthetase, C domain NI17_018765 PF10397 Adenylosuccinate lyase C-terminus NI17_018765 PF00206 Lyase NI17_018770 PF01259 SAICAR synthetase NI17_018775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NI17_018785 PF00155 Aminotransferase class I and II NI17_018805 PF08281 Sigma-70, region 4 NI17_018805 PF04542 Sigma-70 region 2 NI17_018815 PF11774 Lsr2 NI17_018835 PF00534 Glycosyl transferases group 1 NI17_018835 PF13439 Glycosyltransferase Family 4 NI17_018845 PF01557 Fumarylacetoacetate (FAA) hydrolase family NI17_018860 PF01494 FAD binding domain NI17_018875 PF03466 LysR substrate binding domain NI17_018875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_018885 PF01070 FMN-dependent dehydrogenase NI17_018920 PF00871 Acetokinase family NI17_018925 PF09364 XFP N-terminal domain NI17_018925 PF09363 XFP C-terminal domain NI17_018925 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase NI17_018990 PF00672 HAMP domain NI17_018990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_018990 PF00512 His Kinase A (phospho-acceptor) domain NI17_018995 PF00196 Bacterial regulatory proteins, luxR family NI17_018995 PF00072 Response regulator receiver domain NI17_019015 PF03816 Cell envelope-related transcriptional attenuator domain NI17_019040 PF00072 Response regulator receiver domain NI17_019040 PF00196 Bacterial regulatory proteins, luxR family NI17_019045 PF00171 Aldehyde dehydrogenase family NI17_019070 PF04480 Protein of unknown function (DUF559) NI17_019070 PF03852 DNA mismatch endonuclease Vsr NI17_019075 PF00145 C-5 cytosine-specific DNA methylase NI17_019095 PF01119 DNA mismatch repair protein, C-terminal domain NI17_019095 PF08676 MutL C terminal dimerisation domain NI17_019120 PF16123 Hydroxyacylglutathione hydrolase C-terminus NI17_019120 PF00753 Metallo-beta-lactamase superfamily NI17_019140 PF08281 Sigma-70, region 4 NI17_019140 PF04542 Sigma-70 region 2 NI17_019160 PF00293 NUDIX domain NI17_019165 PF01810 LysE type translocator NI17_019185 PF01494 FAD binding domain NI17_019195 PF13193 AMP-binding enzyme C-terminal domain NI17_019195 PF00550 Phosphopantetheine attachment site NI17_019195 PF00501 AMP-binding enzyme NI17_019200 PF00117 Glutamine amidotransferase class-I NI17_019200 PF00425 chorismate binding enzyme NI17_019200 PF04715 Anthranilate synthase component I, N terminal region NI17_019205 PF01474 Class-II DAHP synthetase family NI17_019220 PF08031 Berberine and berberine like NI17_019220 PF01565 FAD binding domain NI17_019225 PF02627 Carboxymuconolactone decarboxylase family NI17_019230 PF01494 FAD binding domain NI17_019245 PF00196 Bacterial regulatory proteins, luxR family NI17_019265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NI17_019265 PF08240 Alcohol dehydrogenase GroES-like domain NI17_019270 PF03928 Haem-degrading NI17_019295 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NI17_019300 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NI17_019305 PF00296 Luciferase-like monooxygenase NI17_019310 PF00582 Universal stress protein family NI17_019320 PF00582 Universal stress protein family NI17_019325 PF00072 Response regulator receiver domain NI17_019325 PF00196 Bacterial regulatory proteins, luxR family NI17_019330 PF00582 Universal stress protein family NI17_019340 PF00690 Cation transporter/ATPase, N-terminus NI17_019340 PF00689 Cation transporting ATPase, C-terminus NI17_019345 PF00582 Universal stress protein family NI17_019350 PF01743 Poly A polymerase head domain NI17_019350 PF00571 CBS domain NI17_019355 PF13419 Haloacid dehalogenase-like hydrolase NI17_019365 PF13185 GAF domain NI17_019365 PF07730 Histidine kinase NI17_019365 PF13492 GAF domain NI17_019365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_019375 PF00400 WD domain, G-beta repeat NI17_019375 PF00069 Protein kinase domain NI17_019380 PF01025 GrpE NI17_019385 PF00012 Hsp70 protein NI17_019390 PF01556 DnaJ C terminal domain NI17_019390 PF16713 Enriched in aromatic and glycine Residues box NI17_019390 PF00226 DnaJ domain NI17_019400 PF07729 FCD domain NI17_019400 PF00392 Bacterial regulatory proteins, gntR family NI17_019405 PF00676 Dehydrogenase E1 component NI17_019410 PF02780 Transketolase, C-terminal domain NI17_019410 PF00364 Biotin-requiring enzyme NI17_019410 PF02779 Transketolase, pyrimidine binding domain NI17_019415 PF02817 e3 binding domain NI17_019415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NI17_019415 PF00364 Biotin-requiring enzyme NI17_019425 PF00282 Pyridoxal-dependent decarboxylase conserved domain NI17_019430 PF09335 SNARE associated Golgi protein NI17_019435 PF00800 Prephenate dehydratase NI17_019435 PF01842 ACT domain NI17_019440 PF00535 Glycosyl transferase family 2 NI17_019445 PF01740 STAS domain NI17_019455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_019455 PF00672 HAMP domain NI17_019455 PF00989 PAS fold NI17_019455 PF00512 His Kinase A (phospho-acceptor) domain NI17_019460 PF01206 Sulfurtransferase TusA NI17_019460 PF00581 Rhodanese-like domain NI17_019465 PF00720 Subtilisin inhibitor-like NI17_019480 PF16697 Inner membrane component of T3SS, cytoplasmic domain NI17_019490 PF01098 Cell cycle protein NI17_019495 PF00905 Penicillin binding protein transpeptidase domain NI17_019500 PF00069 Protein kinase domain NI17_019505 PF00069 Protein kinase domain NI17_019505 PF03793 PASTA domain NI17_019515 PF01694 Rhomboid family NI17_019520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NI17_019570 PF00293 NUDIX domain NI17_019575 PF01593 Flavin containing amine oxidoreductase NI17_019590 PF04261 Dyp-type peroxidase family NI17_019600 PF02630 SCO1/SenC NI17_019625 PF01925 Sulfite exporter TauE/SafE NI17_019630 PF00753 Metallo-beta-lactamase superfamily NI17_019635 PF12833 Helix-turn-helix domain NI17_019635 PF01965 DJ-1/PfpI family NI17_019640 PF01965 DJ-1/PfpI family NI17_019655 PF01425 Amidase NI17_019660 PF00289 Biotin carboxylase, N-terminal domain NI17_019660 PF02785 Biotin carboxylase C-terminal domain NI17_019660 PF00364 Biotin-requiring enzyme NI17_019660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NI17_019665 PF00392 Bacterial regulatory proteins, gntR family NI17_019665 PF07729 FCD domain NI17_019675 PF01209 ubiE/COQ5 methyltransferase family NI17_019680 PF01494 FAD binding domain NI17_019695 PF03948 Ribosomal protein L9, C-terminal domain NI17_019695 PF01281 Ribosomal protein L9, N-terminal domain NI17_019700 PF01084 Ribosomal protein S18 NI17_019705 PF00436 Single-strand binding protein family NI17_019710 PF01250 Ribosomal protein S6 NI17_019720 PF00912 Transglycosylase NI17_019720 PF00905 Penicillin binding protein transpeptidase domain NI17_019730 PF01658 Myo-inositol-1-phosphate synthase NI17_019740 PF07690 Major Facilitator Superfamily NI17_019775 PF03259 Roadblock/LC7 domain NI17_019785 PF01743 Poly A polymerase head domain NI17_019785 PF12627 Probable RNA and SrmB- binding site of polymerase A NI17_019785 PF13735 tRNA nucleotidyltransferase domain 2 putative NI17_019795 PF03023 Lipid II flippase MurJ NI17_019800 PF03023 Lipid II flippase MurJ NI17_019805 PF03793 PASTA domain NI17_019805 PF00069 Protein kinase domain NI17_019810 PF08281 Sigma-70, region 4 NI17_019810 PF04542 Sigma-70 region 2 NI17_019820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_019825 PF00085 Thioredoxin NI17_019830 PF02195 ParB-like nuclease domain NI17_019830 PF17762 HTH domain found in ParB protein NI17_019835 PF13614 AAA domain NI17_019840 PF02527 rRNA small subunit methyltransferase G NI17_019850 PF02096 60Kd inner membrane protein NI17_019855 PF01809 Putative membrane protein insertion efficiency factor NI17_019860 PF00825 Ribonuclease P NI17_019865 PF00468 Ribosomal protein L34 NI17_019870 PF11638 DnaA N-terminal domain NI17_019870 PF08299 Bacterial dnaA protein helix-turn-helix NI17_019870 PF00308 Bacterial dnaA protein NI17_019875 PF00712 DNA polymerase III beta subunit, N-terminal domain NI17_019875 PF02767 DNA polymerase III beta subunit, central domain NI17_019875 PF02768 DNA polymerase III beta subunit, C-terminal domain NI17_019880 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NI17_019880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NI17_019885 PF02463 RecF/RecN/SMC N terminal domain NI17_019890 PF05258 Dna[CI] antecedent, DciA NI17_019895 PF00204 DNA gyrase B NI17_019895 PF00986 DNA gyrase B subunit, carboxyl terminus NI17_019895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_019895 PF01751 Toprim domain NI17_019900 PF00521 DNA gyrase/topoisomerase IV, subunit A NI17_019900 PF03989 DNA gyrase C-terminal domain, beta-propeller NI17_019905 PF12089 Transmembrane domain of unknown function (DUF3566) NI17_019915 PF00270 DEAD/DEAH box helicase NI17_019915 PF18019 HD domain NI17_019915 PF18395 Cas3 C-terminal domain NI17_019945 PF01867 CRISPR associated protein Cas1 NI17_019955 PF02899 Phage integrase, N-terminal SAM-like domain NI17_019955 PF00589 Phage integrase family NI17_019965 PF00561 alpha/beta hydrolase fold NI17_019970 PF00672 HAMP domain NI17_019970 PF07228 Stage II sporulation protein E (SpoIIE) NI17_019985 PF08361 MAATS-type transcriptional repressor, C-terminal region NI17_019985 PF00440 Bacterial regulatory proteins, tetR family NI17_019990 PF00005 ABC transporter NI17_020015 PF00550 Phosphopantetheine attachment site NI17_020020 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NI17_020020 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NI17_020035 PF07690 Major Facilitator Superfamily NI17_020050 PF02348 Cytidylyltransferase NI17_020050 PF13472 GDSL-like Lipase/Acylhydrolase family NI17_020055 PF03102 NeuB family NI17_020055 PF08666 SAF domain NI17_020060 PF00535 Glycosyl transferase family 2 NI17_020070 PF01757 Acyltransferase family NI17_020090 PF01238 Phosphomannose isomerase type I NI17_020095 PF17964 Bacterial Ig domain NI17_020095 PF03734 L,D-transpeptidase catalytic domain NI17_020100 PF03816 Cell envelope-related transcriptional attenuator domain NI17_020110 PF00772 DnaB-like helicase N terminal domain NI17_020110 PF03796 DnaB-like helicase C terminal domain NI17_020110 PF14528 LAGLIDADG-like domain NI17_020145 PF14437 MafB19-like deaminase NI17_020155 PF13936 Helix-turn-helix domain NI17_020155 PF00665 Integrase core domain NI17_020160 PF01580 FtsK/SpoIIIE family NI17_020210 PF03793 PASTA domain NI17_020210 PF00069 Protein kinase domain NI17_020235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NI17_020235 PF03466 LysR substrate binding domain NI17_020245 PF08678 Rsbr N terminal NI17_020245 PF01740 STAS domain NI17_020250 PF01740 STAS domain NI17_020255 PF13581 Histidine kinase-like ATPase domain NI17_020265 PF13466 STAS domain NI17_020265 PF13581 Histidine kinase-like ATPase domain NI17_020265 PF08448 PAS fold NI17_020265 PF07228 Stage II sporulation protein E (SpoIIE) NI17_020270 PF02403 Seryl-tRNA synthetase N-terminal domain NI17_020270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NI17_020315 PF01118 Semialdehyde dehydrogenase, NAD binding domain NI17_020315 PF02774 Semialdehyde dehydrogenase, dimerisation domain NI17_020320 PF13840 ACT domain NI17_020320 PF00696 Amino acid kinase family NI17_020320 PF01842 ACT domain NI17_020325 PF13662 Toprim domain NI17_020325 PF02132 RecR protein NI17_020330 PF02575 YbaB/EbfC DNA-binding family NI17_020335 PF00723 Glycosyl hydrolases family 15 NI17_020340 PF07733 Bacterial DNA polymerase III alpha NTPase domain NI17_020340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NI17_020340 PF14579 Helix-hairpin-helix motif NI17_020340 PF02811 PHP domain NI17_020340 PF01336 OB-fold nucleic acid binding domain NI17_020350 PF12169 DNA polymerase III subunits gamma and tau domain III NI17_020370 PF13977 BetI-type transcriptional repressor, C-terminal NI17_020370 PF00440 Bacterial regulatory proteins, tetR family NI17_020425 PF01867 CRISPR associated protein Cas1 NI17_020530 PF04634 Protein of unknown function, DUF600 NI17_020565 PF01580 FtsK/SpoIIIE family NI17_020605 PF00575 S1 RNA binding domain NI17_020605 PF17674 HHH domain NI17_020605 PF16921 Tex protein YqgF-like domain NI17_020605 PF09371 Tex-like protein N-terminal domain NI17_020610 PF02545 Maf-like protein NI17_020610 PF00293 NUDIX domain NI17_020615 PF02567 Phenazine biosynthesis-like protein NI17_020635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NI17_020635 PF00056 lactate/malate dehydrogenase, NAD binding domain NI17_020655 PF00712 DNA polymerase III beta subunit, N-terminal domain NI17_020655 PF02767 DNA polymerase III beta subunit, central domain NI17_020655 PF02768 DNA polymerase III beta subunit, C-terminal domain NI17_020680 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NI17_020680 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NI17_020685 PF10503 Esterase PHB depolymerase NI17_020710 PF02653 Branched-chain amino acid transport system / permease component NI17_020715 PF00005 ABC transporter NI17_020720 PF00005 ABC transporter NI17_020720 PF12399 Branched-chain amino acid ATP-binding cassette transporter NI17_020730 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NI17_020735 PF00698 Acyl transferase domain NI17_020735 PF08240 Alcohol dehydrogenase GroES-like domain NI17_020735 PF00107 Zinc-binding dehydrogenase NI17_020735 PF16197 Ketoacyl-synthetase C-terminal extension NI17_020735 PF00109 Beta-ketoacyl synthase, N-terminal domain NI17_020735 PF02801 Beta-ketoacyl synthase, C-terminal domain NI17_020735 PF08659 KR domain NI17_020735 PF00550 Phosphopantetheine attachment site NI17_020735 PF14765 Polyketide synthase dehydratase NI17_020740 PF10759 Protein of unknown function (DUF2587) NI17_020765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_020765 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_020765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_020770 PF00378 Enoyl-CoA hydratase/isomerase NI17_020775 PF00171 Aldehyde dehydrogenase family NI17_020780 PF02028 BCCT, betaine/carnitine/choline family transporter NI17_020785 PF01565 FAD binding domain NI17_020785 PF08031 Berberine and berberine like NI17_020790 PF00072 Response regulator receiver domain NI17_020790 PF00486 Transcriptional regulatory protein, C terminal NI17_020795 PF00491 Arginase family NI17_020800 PF13556 PucR C-terminal helix-turn-helix domain NI17_020805 PF00069 Protein kinase domain NI17_020805 PF00400 WD domain, G-beta repeat NI17_020810 PF04237 YjbR NI17_020845 PF08240 Alcohol dehydrogenase GroES-like domain NI17_020845 PF00107 Zinc-binding dehydrogenase NI17_020850 PF07228 Stage II sporulation protein E (SpoIIE) NI17_020850 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain NI17_020855 PF07228 Stage II sporulation protein E (SpoIIE) NI17_020855 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain NI17_020860 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain NI17_020860 PF07228 Stage II sporulation protein E (SpoIIE) NI17_020865 PF00149 Calcineurin-like phosphoesterase NI17_020875 PF00912 Transglycosylase NI17_020875 PF00905 Penicillin binding protein transpeptidase domain NI17_020880 PF02467 Transcription factor WhiB NI17_020885 PF02374 Anion-transporting ATPase NI17_020885 PF17886 HSP20-like domain found in ArsA NI17_020890 PF02374 Anion-transporting ATPase NI17_020910 PF16123 Hydroxyacylglutathione hydrolase C-terminus NI17_020910 PF00753 Metallo-beta-lactamase superfamily NI17_020915 PF13545 Crp-like helix-turn-helix domain NI17_020915 PF00027 Cyclic nucleotide-binding domain NI17_020920 PF00633 Helix-hairpin-helix motif NI17_020920 PF10576 Iron-sulfur binding domain of endonuclease III NI17_020920 PF00730 HhH-GPD superfamily base excision DNA repair protein NI17_020930 PF02674 Colicin V production protein NI17_020940 PF01740 STAS domain NI17_020945 PF00270 DEAD/DEAH box helicase NI17_020945 PF09369 Domain of unknown function (DUF1998) NI17_020945 PF00271 Helicase conserved C-terminal domain NI17_020975 PF00437 Type II/IV secretion system protein NI17_020995 PF00561 alpha/beta hydrolase fold NI17_021005 PF03030 Inorganic H+ pyrophosphatase NI17_021035 PF00005 ABC transporter NI17_021050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NI17_021050 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_021060 PF00440 Bacterial regulatory proteins, tetR family NI17_021060 PF17925 Tetracyclin repressor-like, C-terminal domain NI17_021065 PF00962 Adenosine/AMP deaminase NI17_021070 PF09587 Bacterial capsule synthesis protein PGA_cap NI17_021075 PF01475 Ferric uptake regulator family NI17_021080 PF06628 Catalase-related immune-responsive NI17_021080 PF00199 Catalase NI17_021085 PF03777 ChpA-C NI17_021100 PF01209 ubiE/COQ5 methyltransferase family NI17_021115 PF00544 Pectate lyase NI17_021125 PF07859 alpha/beta hydrolase fold NI17_021140 PF02769 AIR synthase related protein, C-terminal domain NI17_021140 PF00586 AIR synthase related protein, N-terminal domain NI17_021140 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NI17_021160 PF01381 Helix-turn-helix NI17_021170 PF00005 ABC transporter NI17_021180 PF12146 Serine aminopeptidase, S33 NI17_021195 PF12823 Domain of unknown function (DUF3817) NI17_021215 PF16363 GDP-mannose 4,6 dehydratase NI17_021225 PF02656 Domain of unknown function (DUF202) NI17_021230 PF00085 Thioredoxin NI17_021240 PF01634 ATP phosphoribosyltransferase NI17_021240 PF08029 HisG, C-terminal domain NI17_021245 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NI17_021250 PF00106 short chain dehydrogenase NI17_021260 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase NI17_021265 PF04542 Sigma-70 region 2 NI17_021265 PF08281 Sigma-70, region 4 NI17_021270 PF00676 Dehydrogenase E1 component NI17_021275 PF02779 Transketolase, pyrimidine binding domain NI17_021275 PF02780 Transketolase, C-terminal domain NI17_021280 PF02817 e3 binding domain NI17_021280 PF00364 Biotin-requiring enzyme NI17_021280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NI17_021295 PF02028 BCCT, betaine/carnitine/choline family transporter NI17_021315 PF02096 60Kd inner membrane protein NI17_021325 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NI17_021325 PF03900 Porphobilinogen deaminase, C-terminal domain NI17_021335 PF01081 KDPG and KHG aldolase NI17_021340 PF00294 pfkB family carbohydrate kinase NI17_021345 PF00877 NlpC/P60 family NI17_021360 PF00132 Bacterial transferase hexapeptide (six repeats) NI17_021370 PF00689 Cation transporting ATPase, C-terminus NI17_021390 PF02754 Cysteine-rich domain NI17_021390 PF13183 4Fe-4S dicluster domain NI17_021395 PF00012 Hsp70 protein NI17_021400 PF01025 GrpE NI17_021405 PF01556 DnaJ C terminal domain NI17_021405 PF00684 DnaJ central domain NI17_021405 PF00226 DnaJ domain NI17_021410 PF13411 MerR HTH family regulatory protein NI17_021415 PF00004 ATPase family associated with various cellular activities (AAA) NI17_021415 PF07724 AAA domain (Cdc48 subfamily) NI17_021415 PF17871 AAA lid domain NI17_021415 PF02861 Clp amino terminal domain, pathogenicity island component NI17_021415 PF10431 C-terminal, D2-small domain, of ClpB protein NI17_021425 PF00005 ABC transporter NI17_021425 PF13732 Domain of unknown function (DUF4162) NI17_021440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NI17_021440 PF12806 Acetyl-CoA dehydrogenase C-terminal like NI17_021440 PF02770 Acyl-CoA dehydrogenase, middle domain NI17_021440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NI17_021450 PF09190 DALR domain NI17_021450 PF01406 tRNA synthetases class I (C) catalytic domain NI17_021455 PF08032 RNA 2'-O ribose methyltransferase substrate binding NI17_021455 PF00588 SpoU rRNA Methylase family NI17_021475 PF00144 Beta-lactamase NI17_021480 PF00082 Subtilase family NI17_021505 PF00982 Glycosyltransferase family 20 NI17_021510 PF00291 Pyridoxal-phosphate dependent enzyme NI17_021515 PF02597 ThiS family NI17_021520 PF00118 TCP-1/cpn60 chaperonin family NI17_021535 PF01522 Polysaccharide deacetylase NI17_021560 PF00313 'Cold-shock' DNA-binding domain NI17_021565 PF11228 Protein of unknown function (DUF3027) NI17_021585 PF17827 PrmC N-terminal domain NI17_021585 PF05175 Methyltransferase small domain NI17_021595 PF00860 Permease family NI17_021605 PF05977 Transmembrane secretion effector NI17_021610 PF02834 LigT like Phosphoesterase NI17_021620 PF03009 Glycerophosphoryl diester phosphodiesterase family NI17_021625 PF00266 Aminotransferase class-V NI17_021635 PF00285 Citrate synthase, C-terminal domain NI17_021640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NI17_021640 PF01243 Pyridoxamine 5'-phosphate oxidase NI17_021645 PF01325 Iron dependent repressor, N-terminal DNA binding domain NI17_021645 PF02742 Iron dependent repressor, metal binding and dimerisation domain NI17_021645 PF18357 Diphteria toxin repressor SH3 domain NI17_021650 PF13581 Histidine kinase-like ATPase domain NI17_021650 PF07228 Stage II sporulation protein E (SpoIIE) NI17_021650 PF13466 STAS domain NI17_021650 PF08448 PAS fold NI17_021660 PF03631 Virulence factor BrkB NI17_021670 PF02803 Thiolase, C-terminal domain NI17_021670 PF00108 Thiolase, N-terminal domain NI17_021685 PF00672 HAMP domain NI17_021685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_021685 PF00512 His Kinase A (phospho-acceptor) domain NI17_021690 PF00072 Response regulator receiver domain NI17_021690 PF00486 Transcriptional regulatory protein, C terminal NI17_021700 PF00294 pfkB family carbohydrate kinase NI17_021715 PF01170 Putative RNA methylase family UPF0020 NI17_021715 PF10672 S-adenosylmethionine-dependent methyltransferase NI17_021715 PF02926 THUMP domain NI17_021720 PF02384 N-6 DNA Methylase NI17_021725 PF01420 Type I restriction modification DNA specificity domain NI17_021770 PF03793 PASTA domain NI17_021770 PF00069 Protein kinase domain NI17_021805 PF00750 tRNA synthetases class I (R) NI17_021805 PF05746 DALR anticodon binding domain NI17_021805 PF03485 Arginyl tRNA synthetase N terminal domain NI17_021815 PF02504 Fatty acid synthesis protein NI17_021825 PF00480 ROK family NI17_021835 PF00106 short chain dehydrogenase NI17_021840 PF00378 Enoyl-CoA hydratase/isomerase NI17_021850 PF00202 Aminotransferase class-III NI17_021855 PF00171 Aldehyde dehydrogenase family NI17_021860 PF00005 ABC transporter NI17_021860 PF08402 TOBE domain NI17_021870 PF00528 Binding-protein-dependent transport system inner membrane component NI17_021875 PF00528 Binding-protein-dependent transport system inner membrane component NI17_021880 PF01266 FAD dependent oxidoreductase NI17_021885 PF00072 Response regulator receiver domain NI17_021890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NI17_021890 PF00072 Response regulator receiver domain NI17_021890 PF01627 Hpt domain NI17_021890 PF00512 His Kinase A (phospho-acceptor) domain NI17_021890 PF00672 HAMP domain NI17_021890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_021905 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NI17_021910 PF01899 Na+/H+ ion antiporter subunit NI17_021915 PF00361 Proton-conducting membrane transporter NI17_021920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NI17_021925 PF13244 Domain of unknown function (DUF4040) NI17_021925 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NI17_021925 PF00361 Proton-conducting membrane transporter NI17_021925 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NI17_021930 PF00196 Bacterial regulatory proteins, luxR family NI17_021930 PF00072 Response regulator receiver domain NI17_021935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_021935 PF07730 Histidine kinase NI17_021945 PF13732 Domain of unknown function (DUF4162) NI17_021945 PF00005 ABC transporter NI17_021970 PF00534 Glycosyl transferases group 1 NI17_021970 PF13439 Glycosyltransferase Family 4 NI17_021985 PF04234 CopC domain NI17_021985 PF05425 Copper resistance protein D NI17_021985 PF13115 YtkA-like NI17_021990 PF02467 Transcription factor WhiB NI17_021995 PF00583 Acetyltransferase (GNAT) family NI17_022000 PF00202 Aminotransferase class-III NI17_022005 PF06339 Ectoine synthase NI17_022010 PF05721 Phytanoyl-CoA dioxygenase (PhyH) NI17_022015 PF00497 Bacterial extracellular solute-binding proteins, family 3 NI17_022020 PF00528 Binding-protein-dependent transport system inner membrane component NI17_022025 PF00528 Binding-protein-dependent transport system inner membrane component NI17_022030 PF00005 ABC transporter NI17_022035 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NI17_022035 PF07685 CobB/CobQ-like glutamine amidotransferase domain NI17_022040 PF02571 Precorrin-6x reductase CbiJ/CobK NI17_022045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NI17_022045 PF07685 CobB/CobQ-like glutamine amidotransferase domain NI17_022050 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NI17_022055 PF07728 AAA domain (dynein-related subfamily) NI17_022055 PF17863 AAA lid domain NI17_022055 PF13519 von Willebrand factor type A domain NI17_022060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_022065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_022100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_022105 PF02570 Precorrin-8X methylmutase NI17_022115 PF02514 CobN/Magnesium Chelatase NI17_022120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_022130 PF00561 alpha/beta hydrolase fold NI17_022130 PF00364 Biotin-requiring enzyme NI17_022155 PF02503 Polyphosphate kinase middle domain NI17_022155 PF13089 Polyphosphate kinase N-terminal domain NI17_022155 PF13090 Polyphosphate kinase C-terminal domain 2 NI17_022155 PF17941 Polyphosphate kinase C-terminal domain 1 NI17_022160 PF00300 Histidine phosphatase superfamily (branch 1) NI17_022160 PF00293 NUDIX domain NI17_022165 PF00588 SpoU rRNA Methylase family NI17_022170 PF10604 Polyketide cyclase / dehydrase and lipid transport NI17_022185 PF00005 ABC transporter NI17_022185 PF03459 TOBE domain NI17_022190 PF00528 Binding-protein-dependent transport system inner membrane component NI17_022205 PF00196 Bacterial regulatory proteins, luxR family NI17_022205 PF00072 Response regulator receiver domain NI17_022235 PF00005 ABC transporter NI17_022240 PF01032 FecCD transport family NI17_022245 PF01032 FecCD transport family NI17_022255 PF00384 Molybdopterin oxidoreductase NI17_022255 PF01568 Molydopterin dinucleotide binding domain NI17_022260 PF03328 HpcH/HpaI aldolase/citrate lyase family NI17_022270 PF00072 Response regulator receiver domain NI17_022270 PF00486 Transcriptional regulatory protein, C terminal NI17_022275 PF00512 His Kinase A (phospho-acceptor) domain NI17_022275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_022275 PF00672 HAMP domain NI17_022280 PF03334 Na+/H+ antiporter subunit NI17_022285 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NI17_022295 PF00361 Proton-conducting membrane transporter NI17_022300 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NI17_022305 PF00361 Proton-conducting membrane transporter NI17_022305 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NI17_022305 PF13244 Domain of unknown function (DUF4040) NI17_022305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NI17_022310 PF01047 MarR family NI17_022320 PF13180 PDZ domain NI17_022325 PF00581 Rhodanese-like domain NI17_022340 PF03781 Sulfatase-modifying factor enzyme 1 NI17_022345 PF00582 Universal stress protein family NI17_022350 PF13538 UvrD-like helicase C-terminal domain NI17_022355 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NI17_022360 PF00009 Elongation factor Tu GTP binding domain NI17_022360 PF16658 Class II release factor RF3, C-terminal domain NI17_022365 PF08240 Alcohol dehydrogenase GroES-like domain NI17_022365 PF00107 Zinc-binding dehydrogenase NI17_022405 PF07729 FCD domain NI17_022405 PF00392 Bacterial regulatory proteins, gntR family NI17_022425 PF00004 ATPase family associated with various cellular activities (AAA) NI17_022425 PF17866 AAA lid domain NI17_022485 PF01580 FtsK/SpoIIIE family NI17_022490 PF00082 Subtilase family NI17_022510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NI17_022510 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NI17_022525 PF02557 D-alanyl-D-alanine carboxypeptidase NI17_022530 PF01741 Large-conductance mechanosensitive channel, MscL NI17_022555 PF00483 Nucleotidyl transferase NI17_022560 PF03453 MoeA N-terminal region (domain I and II) NI17_022560 PF00994 Probable molybdopterin binding domain NI17_022560 PF03454 MoeA C-terminal region (domain IV) NI17_022565 PF01967 MoaC family NI17_022570 PF00994 Probable molybdopterin binding domain NI17_022575 PF13302 Acetyltransferase (GNAT) domain NI17_022600 PF02416 mttA/Hcf106 family NI17_022615 PF00313 'Cold-shock' DNA-binding domain NI17_022620 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NI17_022620 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase NI17_022625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NI17_022630 PF07549 SecD/SecF GG Motif NI17_022630 PF02355 Protein export membrane protein NI17_022640 PF09334 tRNA synthetases class I (M) NI17_022665 PF01026 TatD related DNase NI17_022670 PF02515 CoA-transferase family III NI17_022705 PF00398 Ribosomal RNA adenine dimethylase NI17_022710 PF00069 Protein kinase domain NI17_022710 PF00400 WD domain, G-beta repeat NI17_022715 PF08544 GHMP kinases C terminal NI17_022715 PF00288 GHMP kinases N terminal domain NI17_022720 PF00376 MerR family regulatory protein NI17_022720 PF09278 MerR, DNA binding NI17_022725 PF00005 ABC transporter NI17_022725 PF12848 ABC transporter NI17_022725 PF16326 ABC transporter C-terminal domain NI17_022735 PF01047 MarR family NI17_022740 PF00440 Bacterial regulatory proteins, tetR family NI17_022740 PF16925 Tetracyclin repressor-like, C-terminal domain NI17_022760 PF12804 MobA-like NTP transferase domain NI17_022760 PF00132 Bacterial transferase hexapeptide (six repeats) NI17_022765 PF14572 Phosphoribosyl synthetase-associated domain NI17_022765 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NI17_022770 PF01386 Ribosomal L25p family NI17_022770 PF14693 Ribosomal protein TL5, C-terminal domain NI17_022775 PF01195 Peptidyl-tRNA hydrolase NI17_022780 PF00459 Inositol monophosphatase family NI17_022785 PF01507 Phosphoadenosine phosphosulfate reductase family NI17_022790 PF00009 Elongation factor Tu GTP binding domain NI17_022795 PF04101 Glycosyltransferase family 28 C-terminal domain NI17_022795 PF03033 Glycosyltransferase family 28 N-terminal domain NI17_022800 PF02082 Transcriptional regulator NI17_022805 PF00970 Oxidoreductase FAD-binding domain NI17_022805 PF00042 Globin NI17_022805 PF00175 Oxidoreductase NAD-binding domain NI17_022815 PF03461 TRCF domain NI17_022815 PF02559 CarD-like/TRCF domain NI17_022815 PF17757 UvrB interaction domain NI17_022815 PF00270 DEAD/DEAH box helicase NI17_022815 PF00271 Helicase conserved C-terminal domain NI17_022825 PF03819 MazG nucleotide pyrophosphohydrolase domain NI17_022830 PF01098 Cell cycle protein NI17_022835 PF01925 Sulfite exporter TauE/SafE NI17_022840 PF00113 Enolase, C-terminal TIM barrel domain NI17_022840 PF03952 Enolase, N-terminal domain NI17_022855 PF02541 Ppx/GppA phosphatase family NI17_022860 PF07992 Pyridine nucleotide-disulphide oxidoreductase NI17_022870 PF00171 Aldehyde dehydrogenase family NI17_022875 PF01619 Proline dehydrogenase NI17_022890 PF00108 Thiolase, N-terminal domain NI17_022890 PF02803 Thiolase, C-terminal domain NI17_022895 PF13472 GDSL-like Lipase/Acylhydrolase family NI17_022900 PF00571 CBS domain NI17_022900 PF00291 Pyridoxal-phosphate dependent enzyme NI17_022905 PF00132 Bacterial transferase hexapeptide (six repeats) NI17_022910 PF01053 Cys/Met metabolism PLP-dependent enzyme NI17_022935 PF17863 AAA lid domain NI17_022935 PF01078 Magnesium chelatase, subunit ChlI NI17_022940 PF08495 FIST N domain NI17_022940 PF10442 FIST C domain NI17_022950 PF01272 Transcription elongation factor, GreA/GreB, C-term NI17_022950 PF03449 Transcription elongation factor, N-terminal NI17_022960 PF02585 GlcNAc-PI de-N-acetylase NI17_022970 PF03190 Protein of unknown function, DUF255 NI17_022980 PF03793 PASTA domain NI17_022980 PF00069 Protein kinase domain NI17_022990 PF01255 Putative undecaprenyl diphosphate synthase NI17_022995 PF02562 PhoH-like protein NI17_022995 PF13638 PIN domain NI17_023005 PF10415 Fumarase C C-terminus NI17_023005 PF00206 Lyase NI17_023015 PF00005 ABC transporter NI17_023020 PF01061 ABC-2 type transporter NI17_023030 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NI17_023035 PF00440 Bacterial regulatory proteins, tetR family NI17_023050 PF02609 Exonuclease VII small subunit NI17_023055 PF02601 Exonuclease VII, large subunit NI17_023055 PF13742 OB-fold nucleic acid binding domain NI17_023070 PF02401 LytB protein NI17_023080 PF02646 RmuC family NI17_023085 PF01926 50S ribosome-binding GTPase NI17_023085 PF06071 Protein of unknown function (DUF933) NI17_023140 PF00392 Bacterial regulatory proteins, gntR family NI17_023140 PF00155 Aminotransferase class I and II NI17_023155 PF02983 Alpha-lytic protease prodomain NI17_023160 PF00326 Prolyl oligopeptidase family NI17_023160 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NI17_023165 PF02585 GlcNAc-PI de-N-acetylase NI17_023190 PF00037 4Fe-4S binding domain NI17_023195 PF00155 Aminotransferase class I and II NI17_023205 PF00132 Bacterial transferase hexapeptide (six repeats) NI17_023205 PF14602 Hexapeptide repeat of succinyl-transferase NI17_023205 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NI17_023210 PF07687 Peptidase dimerisation domain NI17_023210 PF01546 Peptidase family M20/M25/M40 NI17_023215 PF03641 Possible lysine decarboxylase NI17_023225 PF13673 Acetyltransferase (GNAT) domain NI17_023225 PF03352 Methyladenine glycosylase NI17_023225 PF00117 Glutamine amidotransferase class-I NI17_023225 PF00958 GMP synthase C terminal domain NI17_023225 PF13302 Acetyltransferase (GNAT) domain NI17_023235 PF00400 WD domain, G-beta repeat NI17_023235 PF00069 Protein kinase domain NI17_023240 PF00378 Enoyl-CoA hydratase/isomerase NI17_023250 PF00883 Cytosol aminopeptidase family, catalytic domain NI17_023250 PF02789 Cytosol aminopeptidase family, N-terminal domain NI17_023255 PF01596 O-methyltransferase NI17_023260 PF08281 Sigma-70, region 4 NI17_023260 PF04542 Sigma-70 region 2 NI17_023275 PF13180 PDZ domain NI17_023280 PF10609 NUBPL iron-transfer P-loop NTPase NI17_023280 PF01883 Iron-sulfur cluster assembly protein NI17_023295 PF02811 PHP domain NI17_023310 PF00271 Helicase conserved C-terminal domain NI17_023310 PF00270 DEAD/DEAH box helicase NI17_023330 PF05552 Conserved TM helix NI17_023345 PF00899 ThiF family NI17_023345 PF00581 Rhodanese-like domain NI17_023360 PF13361 UvrD-like helicase C-terminal domain NI17_023360 PF00580 UvrD/REP helicase N-terminal domain NI17_023365 PF00580 UvrD/REP helicase N-terminal domain NI17_023365 PF13361 UvrD-like helicase C-terminal domain NI17_023375 PF01546 Peptidase family M20/M25/M40 NI17_023375 PF07687 Peptidase dimerisation domain NI17_023380 PF09297 NADH pyrophosphatase zinc ribbon domain NI17_023380 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NI17_023380 PF00293 NUDIX domain NI17_023390 PF00462 Glutaredoxin NI17_023395 PF00580 UvrD/REP helicase N-terminal domain NI17_023395 PF00570 HRDC domain NI17_023395 PF13361 UvrD-like helicase C-terminal domain NI17_023405 PF02467 Transcription factor WhiB NI17_023420 PF00875 DNA photolyase NI17_023420 PF03441 FAD binding domain of DNA photolyase NI17_023435 PF01370 NAD dependent epimerase/dehydratase family NI17_023440 PF02391 MoaE protein NI17_023445 PF13180 PDZ domain NI17_023445 PF05362 Lon protease (S16) C-terminal proteolytic domain NI17_023455 PF03699 Uncharacterised protein family (UPF0182) NI17_023480 PF12704 MacB-like periplasmic core domain NI17_023480 PF02687 FtsX-like permease family NI17_023480 PF00005 ABC transporter NI17_023490 PF02687 FtsX-like permease family NI17_023490 PF12704 MacB-like periplasmic core domain NI17_023490 PF00005 ABC transporter NI17_023495 PF00459 Inositol monophosphatase family NI17_023500 PF03193 RsgA GTPase NI17_023505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NI17_023520 PF02586 SOS response associated peptidase (SRAP) NI17_023530 PF08281 Sigma-70, region 4 NI17_023530 PF04542 Sigma-70 region 2 NI17_023535 PF13490 Putative zinc-finger NI17_023540 PF01966 HD domain NI17_023550 PF00364 Biotin-requiring enzyme NI17_023560 PF00205 Thiamine pyrophosphate enzyme, central domain NI17_023560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_023560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_023565 PF00392 Bacterial regulatory proteins, gntR family NI17_023565 PF07702 UTRA domain NI17_023570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NI17_023570 PF07568 Histidine kinase NI17_023570 PF12282 Signal transduction histidine kinase NI17_023575 PF02467 Transcription factor WhiB NI17_023580 PF00781 Diacylglycerol kinase catalytic domain NI17_023590 PF04545 Sigma-70, region 4 NI17_023590 PF04542 Sigma-70 region 2 NI17_023590 PF04539 Sigma-70 region 3 NI17_023595 PF13581 Histidine kinase-like ATPase domain NI17_023605 PF00005 ABC transporter NI17_023610 PF00528 Binding-protein-dependent transport system inner membrane component NI17_023615 PF00497 Bacterial extracellular solute-binding proteins, family 3 NI17_023620 PF03949 Malic enzyme, NAD binding domain NI17_023620 PF00390 Malic enzyme, N-terminal domain NI17_023645 PF16078 2-oxoglutarate dehydrogenase N-terminus NI17_023645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NI17_023645 PF16870 2-oxoglutarate dehydrogenase C-terminal NI17_023645 PF02779 Transketolase, pyrimidine binding domain NI17_023645 PF00676 Dehydrogenase E1 component NI17_023650 PF00106 short chain dehydrogenase NI17_023660 PF00155 Aminotransferase class I and II NI17_023670 PF00912 Transglycosylase NI17_023670 PF00905 Penicillin binding protein transpeptidase domain NI17_023680 PF01209 ubiE/COQ5 methyltransferase family NI17_023685 PF00534 Glycosyl transferases group 1 NI17_023685 PF13439 Glycosyltransferase Family 4 NI17_023690 PF00753 Metallo-beta-lactamase superfamily NI17_023690 PF16123 Hydroxyacylglutathione hydrolase C-terminus NI17_023700 PF02445 Quinolinate synthetase A protein NI17_023710 PF13419 Haloacid dehalogenase-like hydrolase NI17_023715 PF00571 CBS domain NI17_023715 PF00005 ABC transporter NI17_023720 PF00528 Binding-protein-dependent transport system inner membrane component NI17_023725 PF00528 Binding-protein-dependent transport system inner membrane component NI17_023740 PF01613 Flavin reductase like domain NI17_023745 PF01343 Peptidase family S49 NI17_023750 PF00704 Glycosyl hydrolases family 18 NI17_023750 PF00041 Fibronectin type III domain NI17_023750 PF00553 Cellulose binding domain NI17_023760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NI17_023760 PF02806 Alpha amylase, C-terminal all-beta domain NI17_023760 PF00128 Alpha amylase, catalytic domain NI17_023765 PF18085 Maltokinase N-terminal cap domain NI17_023775 PF11896 Domain of unknown function (DUF3416) NI17_023780 PF11897 Protein of unknown function (DUF3417) NI17_023780 PF00343 Carbohydrate phosphorylase NI17_023790 PF00005 ABC transporter NI17_023795 PF02361 Cobalt transport protein NI17_023800 PF00378 Enoyl-CoA hydratase/isomerase NI17_023810 PF03793 PASTA domain NI17_023810 PF00069 Protein kinase domain NI17_023815 PF01012 Electron transfer flavoprotein domain NI17_023820 PF00766 Electron transfer flavoprotein FAD-binding domain NI17_023820 PF01012 Electron transfer flavoprotein domain NI17_023825 PF00266 Aminotransferase class-V NI17_023850 PF01653 NAD-dependent DNA ligase adenylation domain NI17_023850 PF12826 Helix-hairpin-helix motif NI17_023850 PF00533 BRCA1 C Terminus (BRCT) domain NI17_023850 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NI17_023850 PF03120 NAD-dependent DNA ligase OB-fold domain NI17_023855 PF00563 EAL domain NI17_023855 PF03707 Bacterial signalling protein N terminal repeat NI17_023855 PF00990 Diguanylate cyclase, GGDEF domain NI17_023860 PF02686 Glu-tRNAGln amidotransferase C subunit NI17_023865 PF01425 Amidase NI17_023880 PF02934 GatB/GatE catalytic domain NI17_023880 PF02637 GatB domain NI17_023885 PF00563 EAL domain NI17_023885 PF03707 Bacterial signalling protein N terminal repeat NI17_023885 PF00990 Diguanylate cyclase, GGDEF domain NI17_023890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NI17_023890 PF00205 Thiamine pyrophosphate enzyme, central domain NI17_023890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NI17_023895 PF10369 Small subunit of acetolactate synthase NI17_023895 PF01842 ACT domain NI17_023900 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NI17_023900 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NI17_023905 PF01842 ACT domain NI17_023905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NI17_023905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NI17_023910 PF00180 Isocitrate/isopropylmalate dehydrogenase NI17_023915 PF01063 Amino-transferase class IV NI17_023920 PF00682 HMGL-like NI17_023920 PF08502 LeuA allosteric (dimerisation) domain NI17_023950 PF00067 Cytochrome P450 NI17_023955 PF00067 Cytochrome P450 NI17_023980 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NI17_023995 PF02796 Helix-turn-helix domain of resolvase NI17_023995 PF00239 Resolvase, N terminal domain NI17_024095 PF00155 Aminotransferase class I and II NI17_024095 PF00392 Bacterial regulatory proteins, gntR family NI17_024105 PF03796 DnaB-like helicase C terminal domain NI17_024105 PF00772 DnaB-like helicase N terminal domain NI17_024115 PF03389 MobA/MobL family NI17_024115 PF01443 Viral (Superfamily 1) RNA helicase NI17_024115 PF17841 BID domain of Bartonella effector protein (Bep) NI17_024135 PF17841 BID domain of Bartonella effector protein (Bep) NI17_024135 PF01443 Viral (Superfamily 1) RNA helicase NI17_024135 PF03389 MobA/MobL family NI17_024190 PF01476 LysM domain NI17_024190 PF00877 NlpC/P60 family NI17_024190 PF08239 Bacterial SH3 domain