A3L01_00010	SM00382	ATPases associated with a variety of cellular activities
A3L01_00025	SM00487	DEAD-like helicases superfamily
A3L01_00035	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_00035	SM01240	A3L01_00035
A3L01_00065	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L01_00100	SM01001	AIR carboxylase
A3L01_00105	SM01209	A3L01_00105
A3L01_00105	SM01210	A3L01_00105
A3L01_00120	SM01211	A3L01_00120
A3L01_00190	SM00864	Tubulin/FtsZ family, GTPase domain
A3L01_00225	SM01402	A3L01_00225
A3L01_00240	SM01389	A3L01_00240
A3L01_00245	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L01_00455	SM00670	Large family of predicted nucleotide-binding domains
A3L01_00465	SM01405	A3L01_00465
A3L01_00485	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L01_00490	SM00382	ATPases associated with a variety of cellular activities
A3L01_00545	SM00529	Helix-turn-helix diphteria tox regulatory element
A3L01_00560	SM00382	ATPases associated with a variety of cellular activities
A3L01_00575	SM00518	AP endonuclease family 2
A3L01_00610	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L01_00610	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L01_00610	SM00486	DNA polymerase type-B family
A3L01_00670	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L01_00675	SM00060	Fibronectin type 3 domain
A3L01_00675	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
A3L01_00675	SM00710	Parallel beta-helix repeats
A3L01_00695	SM00870	A3L01_00695
A3L01_00720	SM00670	Large family of predicted nucleotide-binding domains
A3L01_00785	SM00948	Proteasome subunit A N-terminal signature  Add an annotation
A3L01_00795	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L01_00795	SM00322	K homology RNA-binding domain
A3L01_00820	SM00709	Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
A3L01_00825	SM01022	A3L01_00825
A3L01_00840	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_00865	SM00653	domain present in translation initiation factor eIF2B and eIF5
A3L01_00870	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L01_00870	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L01_00870	SM00350	minichromosome  maintenance proteins
A3L01_00870	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_00945	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A3L01_01045	SM01382	A3L01_01045
A3L01_01045	SM01383	A3L01_01045
A3L01_01060	SM00322	K homology RNA-binding domain
A3L01_01075	SM00538	A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
A3L01_01085	SM01374	A3L01_01085
A3L01_01090	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L01_01095	SM00363	S4 RNA-binding domain
A3L01_01120	SM01393	A3L01_01120
A3L01_01125	SM01416	A3L01_01125
A3L01_01160	SM01415	A3L01_01160
A3L01_01185	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_01185	SM01136	A3L01_01185
A3L01_01205	SM00363	S4 RNA-binding domain
A3L01_01205	SM01390	A3L01_01205
A3L01_01215	SM00662	RNA polymerases D
A3L01_01255	SM01192	A3L01_01255
A3L01_01255	SM01193	A3L01_01255
A3L01_01270	SM01377	A3L01_01270
A3L01_01300	SM00344	helix_turn_helix ASNC type
A3L01_01325	SM00382	ATPases associated with a variety of cellular activities
A3L01_01325	SM00962	SRP54-type protein, GTPase domain
A3L01_01325	SM00963	SRP54-type protein, helical bundle domain
A3L01_01405	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L01_01410	SM01240	A3L01_01410
A3L01_01420	SM00849	Metallo-beta-lactamase superfamily
A3L01_01455	SM01384	A3L01_01455
A3L01_01470	SM00966	SpoVT / AbrB like domain 
A3L01_01520	SM00938	Nitrogen regulatory protein P-II
A3L01_01535	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A3L01_01555	SM00322	K homology RNA-binding domain
A3L01_01555	SM00849	Metallo-beta-lactamase superfamily
A3L01_01555	SM01027	Beta-Casp domain
A3L01_01560	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_01640	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_01750	SM00382	ATPases associated with a variety of cellular activities
A3L01_01755	SM00028	Tetratricopeptide repeats
A3L01_01760	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
A3L01_01765	SM00849	Metallo-beta-lactamase superfamily
A3L01_01850	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L01_01940	SM00322	K homology RNA-binding domain
A3L01_01955	SM00663	RNA polymerase I subunit A N-terminus
A3L01_02085	SM00382	ATPases associated with a variety of cellular activities
A3L01_02125	SM00493	A3L01_02125
A3L01_02130	SM00493	A3L01_02130
A3L01_02135	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_02140	SM00803	TATA box binding protein associated factor
A3L01_02175	SM00649	Ribosomal protein L11/L12
A3L01_02180	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A3L01_02180	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L01_02190	SM00864	Tubulin/FtsZ family, GTPase domain
A3L01_02190	SM00865	Tubulin/FtsZ family, C-terminal domain
A3L01_02240	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L01_02240	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L01_02240	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3L01_02240	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3L01_02240	SM00493	A3L01_02240
A3L01_02255	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_02295	SM00487	DEAD-like helicases superfamily
A3L01_02295	SM00490	helicase superfamily c-terminal domain
A3L01_02345	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3L01_02345	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3L01_02345	SM00487	DEAD-like helicases superfamily
A3L01_02345	SM00493	A3L01_02345
A3L01_02370	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L01_02395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L01_02400	SM00322	K homology RNA-binding domain
A3L01_02490	SM00849	Metallo-beta-lactamase superfamily
A3L01_02510	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_02530	SM00382	ATPases associated with a variety of cellular activities
A3L01_02540	SM01118	A3L01_02540
A3L01_02585	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L01_02650	SM00382	ATPases associated with a variety of cellular activities
A3L01_02660	SM00487	DEAD-like helicases superfamily
A3L01_02660	SM00490	helicase superfamily c-terminal domain
A3L01_02670	SM00873	B3/4 domain
A3L01_02670	SM00874	tRNA synthetase B5 domain
A3L01_02680	SM00829	Enoylreductase
A3L01_02705	SM00845	GatB domain
A3L01_02710	SM00870	A3L01_02710
A3L01_02740	SM00650	Ribosomal RNA adenine dimethylases
A3L01_02750	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_02805	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_02820	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_02840	SM01376	A3L01_02840
A3L01_02940	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L01_02990	SM00879	A3L01_02990
A3L01_02995	SM00659	RNA polymerase subunit CX
A3L01_03030	SM00382	ATPases associated with a variety of cellular activities
A3L01_03125	SM00344	helix_turn_helix ASNC type
A3L01_03220	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_03235	SM00984	UDP binding domain
A3L01_03255	SM00836	DALR anticodon binding domain
A3L01_03255	SM01016	Arginyl tRNA synthetase N terminal dom
A3L01_03260	SM01130	A3L01_03260
A3L01_03270	SM01194	A3L01_03270
A3L01_03330	SM01386	A3L01_03330
A3L01_03330	SM01387	A3L01_03330
A3L01_03345	SM01397	A3L01_03345
A3L01_03350	SM00981	A3L01_03350
A3L01_03360	SM00344	helix_turn_helix ASNC type
A3L01_03370	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_03390	SM00382	ATPases associated with a variety of cellular activities
A3L01_03395	SM00382	ATPases associated with a variety of cellular activities
A3L01_03440	SM00382	ATPases associated with a variety of cellular activities
A3L01_03460	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_03460	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_03475	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_03505	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L01_03560	SM00946	Prolyl-tRNA synthetase, C-terminal
A3L01_03670	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_03685	SM00382	ATPases associated with a variety of cellular activities
A3L01_03685	SM00962	SRP54-type protein, GTPase domain
A3L01_03685	SM00963	SRP54-type protein, helical bundle domain
A3L01_03700	SM00382	ATPases associated with a variety of cellular activities
A3L01_03735	SM00840	A3L01_03735
A3L01_03755	SM00382	ATPases associated with a variety of cellular activities
A3L01_03770	SM00382	ATPases associated with a variety of cellular activities
A3L01_03770	SM00487	DEAD-like helicases superfamily
A3L01_03770	SM00490	helicase superfamily c-terminal domain
A3L01_03790	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_03805	SM00470	ParB-like nuclease domain
A3L01_03815	SM00849	Metallo-beta-lactamase superfamily
A3L01_03890	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_03930	SM00852	Probable molybdopterin binding domain
A3L01_03935	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A3L01_03940	SM01152	A3L01_03940
A3L01_03965	SM00651	snRNP Sm proteins
A3L01_04015	SM01194	A3L01_04015
A3L01_04035	SM00899	A3L01_04035
A3L01_04065	SM00344	helix_turn_helix ASNC type
A3L01_04070	SM01118	A3L01_04070
A3L01_04085	SM00849	Metallo-beta-lactamase superfamily
A3L01_04175	SM00986	Uracil DNA glycosylase superfamily
A3L01_04175	SM00987	UreE urease accessory protein, C-terminal domain 
A3L01_04220	SM00852	Probable molybdopterin binding domain
A3L01_04225	SM00852	Probable molybdopterin binding domain
A3L01_04250	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L01_04255	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_04320	SM00220	Serine/Threonine protein kinases, catalytic domain
A3L01_04325	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3L01_04340	SM00382	ATPases associated with a variety of cellular activities
A3L01_04420	SM00487	DEAD-like helicases superfamily
A3L01_04420	SM00490	helicase superfamily c-terminal domain
A3L01_04430	SM00382	ATPases associated with a variety of cellular activities
A3L01_04440	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_04465	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_04490	SM00849	Metallo-beta-lactamase superfamily
A3L01_04510	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L01_04555	SM01403	A3L01_04555
A3L01_04570	SM00838	Elongation factor G C-terminus
A3L01_04570	SM00889	Elongation factor G, domain IV
A3L01_04575	SM00670	Large family of predicted nucleotide-binding domains
A3L01_04585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L01_04615	SM00387	Histidine kinase-like ATPases
A3L01_04620	SM00322	K homology RNA-binding domain
A3L01_04625	SM00090	RIO-like kinase
A3L01_04630	SM00652	eukaryotic translation initiation factor 1A
A3L01_04635	SM00382	ATPases associated with a variety of cellular activities
A3L01_04835	SM00014	Acid phosphatase homologues
A3L01_04840	SM01022	A3L01_04840
A3L01_04875	SM00440	C2C2 Zinc finger
A3L01_04875	SM00661	RNA polymerase subunit 9
A3L01_04890	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L01_04910	SM00382	ATPases associated with a variety of cellular activities
A3L01_04935	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_04965	SM00849	Metallo-beta-lactamase superfamily
A3L01_05055	SM00382	ATPases associated with a variety of cellular activities
A3L01_05130	SM00981	A3L01_05130
A3L01_05140	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L01_05160	SM01133	A3L01_05160
A3L01_05180	SM00382	ATPases associated with a variety of cellular activities
A3L01_05195	SM00966	SpoVT / AbrB like domain 
A3L01_05200	SM00670	Large family of predicted nucleotide-binding domains
A3L01_05210	SM00788	Adenylosuccinate synthetase
A3L01_05260	SM00849	Metallo-beta-lactamase superfamily
A3L01_05325	SM00998	Adenylosuccinate lyase C-terminus
A3L01_05340	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_05345	SM00382	ATPases associated with a variety of cellular activities
A3L01_05365	SM00487	DEAD-like helicases superfamily
A3L01_05365	SM00490	helicase superfamily c-terminal domain
A3L01_05375	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
A3L01_05380	SM00028	Tetratricopeptide repeats
A3L01_05380	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_05385	SM00849	Metallo-beta-lactamase superfamily
A3L01_05410	SM00710	Parallel beta-helix repeats
A3L01_05455	SM00562	A3L01_05455
A3L01_05460	SM00746	metallochaperone-like domain
A3L01_05500	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_05650	SM00382	ATPases associated with a variety of cellular activities
A3L01_05675	SM00487	DEAD-like helicases superfamily
A3L01_05675	SM00490	helicase superfamily c-terminal domain
A3L01_05680	SM00344	helix_turn_helix ASNC type
A3L01_05705	SM00382	ATPases associated with a variety of cellular activities
A3L01_05755	SM00382	ATPases associated with a variety of cellular activities
A3L01_05765	SM01072	Cell division protein 48 (CDC48) domain 2
A3L01_05770	SM00478	endonuclease III
A3L01_05770	SM00525	A3L01_05770
A3L01_05795	SM00518	AP endonuclease family 2
A3L01_05800	SM00881	CoA binding domain
A3L01_05855	SM00981	A3L01_05855
A3L01_05885	SM00493	A3L01_05885
A3L01_05915	SM00487	DEAD-like helicases superfamily
A3L01_05915	SM00488	A3L01_05915
A3L01_05915	SM00491	A3L01_05915
A3L01_05930	SM00487	DEAD-like helicases superfamily
A3L01_05930	SM00490	helicase superfamily c-terminal domain
A3L01_05970	SM00797	Allophanate hydrolase subunit 2
A3L01_05975	SM00796	Allophanate hydrolase subunit 1
A3L01_05985	SM00670	Large family of predicted nucleotide-binding domains
A3L01_06000	SM00670	Large family of predicted nucleotide-binding domains
A3L01_06005	SM00478	endonuclease III
A3L01_06020	SM00244	prohibitin homologues
A3L01_06025	SM00382	ATPases associated with a variety of cellular activities
A3L01_06040	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A3L01_06050	SM00465	GIY-YIG type nucleases (URI domain)
A3L01_06070	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L01_06070	SM00487	DEAD-like helicases superfamily
A3L01_06070	SM00490	helicase superfamily c-terminal domain
A3L01_06070	SM00891	ERCC4 domain
A3L01_06090	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
A3L01_06095	SM00968	SMC proteins Flexible Hinge Domain
A3L01_06110	SM00382	ATPases associated with a variety of cellular activities
A3L01_06120	SM00481	DNA polymerase alpha chain like domain
A3L01_06155	SM00670	Large family of predicted nucleotide-binding domains
A3L01_06190	SM00028	Tetratricopeptide repeats
A3L01_06210	SM00852	Probable molybdopterin binding domain
A3L01_06220	SM00382	ATPases associated with a variety of cellular activities
A3L01_06220	SM01072	Cell division protein 48 (CDC48) domain 2
A3L01_06220	SM01073	Cell division protein 48 (CDC48) N-terminal domain
A3L01_06235	SM00881	CoA binding domain
A3L01_06250	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A3L01_06250	SM00484	Xeroderma pigmentosum G I-region
A3L01_06250	SM00485	Xeroderma pigmentosum G N-region
A3L01_06255	SM00385	domain present in cyclins, TFIIB and Retinoblastoma
A3L01_06270	SM01413	A3L01_06270
A3L01_06275	SM01103	A3L01_06275
A3L01_06295	SM00654	translation initiation factor 6
A3L01_06300	SM01380	A3L01_06300
A3L01_06335	SM00382	ATPases associated with a variety of cellular activities
A3L01_06335	SM01072	Cell division protein 48 (CDC48) domain 2
A3L01_06335	SM01073	Cell division protein 48 (CDC48) N-terminal domain
A3L01_06350	SM00232	JAB/MPN domain
A3L01_06395	SM00382	ATPases associated with a variety of cellular activities
A3L01_06400	SM00382	ATPases associated with a variety of cellular activities
A3L01_06410	SM00849	Metallo-beta-lactamase superfamily
A3L01_06425	SM00195	Dual specificity phosphatase, catalytic domain
A3L01_06425	SM00404	Protein tyrosine phosphatase, catalytic domain motif
A3L01_06515	SM01022	A3L01_06515
A3L01_06520	SM01022	A3L01_06520
A3L01_06565	SM00996	S-adenosyl-L-homocysteine hydrolase
A3L01_06565	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A3L01_06575	SM00382	ATPases associated with a variety of cellular activities
A3L01_06595	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L01_06640	SM00881	CoA binding domain
A3L01_06680	SM00382	ATPases associated with a variety of cellular activities
A3L01_06750	SM00382	ATPases associated with a variety of cellular activities
A3L01_06780	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_06795	SM00803	TATA box binding protein associated factor
A3L01_06805	SM00385	domain present in cyclins, TFIIB and Retinoblastoma
A3L01_06835	SM00382	ATPases associated with a variety of cellular activities
A3L01_06855	SM00382	ATPases associated with a variety of cellular activities
A3L01_06885	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L01_06890	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_06910	SM00864	Tubulin/FtsZ family, GTPase domain
A3L01_06910	SM00865	Tubulin/FtsZ family, C-terminal domain
A3L01_06965	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_06975	SM00382	ATPases associated with a variety of cellular activities
A3L01_07000	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L01_07000	SM00487	DEAD-like helicases superfamily
A3L01_07000	SM00490	helicase superfamily c-terminal domain
A3L01_07010	SM00382	ATPases associated with a variety of cellular activities
A3L01_07015	SM00382	ATPases associated with a variety of cellular activities
A3L01_07170	SM00849	Metallo-beta-lactamase superfamily
A3L01_07175	SM00881	CoA binding domain
A3L01_07215	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_07250	SM01206	A3L01_07250
A3L01_07255	SM00931	NOSIC (NUC001) domain
A3L01_07285	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_07335	SM00344	helix_turn_helix ASNC type
A3L01_07505	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_07510	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L01_07590	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_07645	SM00382	ATPases associated with a variety of cellular activities
A3L01_07655	SM00090	RIO-like kinase
A3L01_07665	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_07680	SM00966	SpoVT / AbrB like domain 
A3L01_07745	SM01400	A3L01_07745
A3L01_07755	SM01022	A3L01_07755
A3L01_07760	SM00849	Metallo-beta-lactamase superfamily
A3L01_07765	SM00382	ATPases associated with a variety of cellular activities
A3L01_07780	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_07800	SM00382	ATPases associated with a variety of cellular activities
A3L01_07805	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L01_07805	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L01_07805	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_07840	SM00382	ATPases associated with a variety of cellular activities
A3L01_07845	SM00933	A3L01_07845
A3L01_07860	SM00382	ATPases associated with a variety of cellular activities
A3L01_07920	SM00530	Helix-turn-helix XRE-family like proteins 
A3L01_08000	SM00460	Transglutaminase/protease-like homologues
A3L01_08030	SM00642	Alpha-amylase domain
A3L01_08050	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_08050	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L01_08090	SM00919	Malic enzyme, NAD binding domain
A3L01_08090	SM01274	A3L01_08090
A3L01_08095	SM00882	Coenzyme A transferase
A3L01_08160	SM01407	A3L01_08160
A3L01_08265	SM00531	Transcription initiation factor IIE
A3L01_08355	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L01_08380	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_08410	SM00344	helix_turn_helix ASNC type
A3L01_08455	SM00986	Uracil DNA glycosylase superfamily
A3L01_08455	SM00987	UreE urease accessory protein, C-terminal domain 
A3L01_08505	SM01007	Class II Aldolase and Adducin N-terminal domain
A3L01_08660	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_08830	SM00981	A3L01_08830
A3L01_08865	SM01133	A3L01_08865
A3L01_08880	SM01192	A3L01_08880
A3L01_08880	SM01193	A3L01_08880
A3L01_08890	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_08895	SM00344	helix_turn_helix ASNC type
A3L01_08960	SM00769	Water Stress and Hypersensitive response
A3L01_08970	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_09000	SM00903	Flavin reductase like domain
A3L01_09005	SM00881	CoA binding domain
A3L01_09030	SM00487	DEAD-like helicases superfamily
A3L01_09030	SM00490	helicase superfamily c-terminal domain
A3L01_09060	SM00382	ATPases associated with a variety of cellular activities
A3L01_09060	SM01074	CDC6, C terminal
A3L01_09085	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L01_09085	SM00382	ATPases associated with a variety of cellular activities
A3L01_09115	SM00318	Staphylococcal nuclease homologues
A3L01_09130	SM00506	Appr-1"-p processing enzyme
A3L01_09160	SM00642	Alpha-amylase domain
A3L01_09165	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_09175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_09180	SM00881	CoA binding domain
A3L01_09225	SM00981	A3L01_09225
A3L01_09250	SM00382	ATPases associated with a variety of cellular activities
A3L01_09315	SM01022	A3L01_09315
A3L01_09340	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L01_09370	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3L01_09385	SM00984	UDP binding domain
A3L01_09395	SM00984	UDP binding domain
A3L01_09480	SM00382	ATPases associated with a variety of cellular activities
A3L01_09485	SM00382	ATPases associated with a variety of cellular activities
A3L01_09570	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L01_09720	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L01_09740	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_09845	SM00382	ATPases associated with a variety of cellular activities
A3L01_09860	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L01_09895	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L01_09925	SM00382	ATPases associated with a variety of cellular activities
A3L01_09930	SM00382	ATPases associated with a variety of cellular activities
A3L01_09950	SM01230	A3L01_09950
A3L01_10010	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L01_10030	SM00093	SERine  Proteinase INhibitors
A3L01_10060	SM00382	ATPases associated with a variety of cellular activities
A3L01_10085	SM00642	Alpha-amylase domain
A3L01_10160	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L01_10160	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L01_10205	SM00382	ATPases associated with a variety of cellular activities
A3L01_10245	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
A3L01_10245	SM00320	WD40 repeats
A3L01_10245	SM00634	Bacterial Ig-like domain (group 1)
A3L01_10250	SM00634	Bacterial Ig-like domain (group 1)
A3L01_10310	SM00382	ATPases associated with a variety of cellular activities
A3L01_10320	SM00888	EF-1 guanine nucleotide exchange domain
A3L01_10330	SM00028	Tetratricopeptide repeats
