A3L04_00005	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_00005	PF12911	A3L04_00005
A3L04_00010	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_00015	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A3L04_00020	PF00232	Glycosyl hydrolase family 1
A3L04_00035	PF03692	A3L04_00035
A3L04_00045	PF00583	Acetyltransferase (GNAT) family
A3L04_00045	PF04055	Radical SAM superfamily
A3L04_00045	PF16199	A3L04_00045
A3L04_00055	PF13561	Enoyl-(Acyl carrier protein) reductase
A3L04_00065	PF01978	Sugar-specific transcriptional regulator TrmB
A3L04_00070	PF00005	ABC transporter
A3L04_00075	PF12698	ABC-2 family transporter protein
A3L04_00080	PF01061	A3L04_00080
A3L04_00085	PF12724	Flavodoxin domain
A3L04_00090	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
A3L04_00090	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
A3L04_00095	PF13370	4Fe-4S single cluster domain
A3L04_00105	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
A3L04_00110	PF00919	Uncharacterized protein family UPF0004
A3L04_00110	PF01938	TRAM domain
A3L04_00110	PF04055	Radical SAM superfamily
A3L04_00115	PF01877	RNA binding
A3L04_00120	PF01876	RNase P subunit p30
A3L04_00125	PF14938	Soluble NSF attachment protein, SNAP
A3L04_00130	PF00535	Glycosyl transferase family 2
A3L04_00135	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
A3L04_00135	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
A3L04_00140	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
A3L04_00140	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
A3L04_00145	PF00121	Triosephosphate isomerase
A3L04_00145	PF05690	Thiazole biosynthesis protein ThiG
A3L04_00150	PF12710	haloacid dehalogenase-like hydrolase
A3L04_00155	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
A3L04_00165	PF02676	Methyltransferase TYW3
A3L04_00170	PF04055	Radical SAM superfamily
A3L04_00180	PF04079	Putative transcriptional regulators (Ypuh-like)
A3L04_00185	PF01336	OB-fold nucleic acid binding domain
A3L04_00185	PF08646	Replication factor-A C terminal domain
A3L04_00195	PF01336	OB-fold nucleic acid binding domain
A3L04_00205	PF03911	Sec61beta family
A3L04_00230	PF00005	ABC transporter
A3L04_00235	PF00271	Helicase conserved C-terminal domain
A3L04_00235	PF02732	ERCC4 domain
A3L04_00235	PF04851	Type III restriction enzyme, res subunit
A3L04_00235	PF12826	Helix-hairpin-helix motif
A3L04_00240	PF00459	Inositol monophosphatase family
A3L04_00245	PF01889	A3L04_00245
A3L04_00250	PF00009	Elongation factor Tu GTP binding domain
A3L04_00250	PF00679	Elongation factor G C-terminus
A3L04_00250	PF03144	Elongation factor Tu domain 2
A3L04_00250	PF03764	Elongation factor G, domain IV
A3L04_00250	PF14492	Elongation Factor G, domain II
A3L04_00255	PF09341	Transcription factor Pcc1
A3L04_00265	PF03604	DNA directed RNA polymerase, 7 kDa subunit
A3L04_00270	PF01780	Ribosomal L37ae protein family
A3L04_00275	PF07892	Protein of unknown function (DUF1667)
A3L04_00280	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_00285	PF01266	FAD dependent oxidoreductase
A3L04_00285	PF04324	BFD-like [2Fe-2S] binding domain
A3L04_00290	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
A3L04_00290	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
A3L04_00305	PF03009	Glycerophosphoryl diester phosphodiesterase family
A3L04_00310	PF07690	Major Facilitator Superfamily
A3L04_00315	PF13347	MFS/sugar transport protein
A3L04_00320	PF12697	Alpha/beta hydrolase family
A3L04_00325	PF01850	PIN domain
A3L04_00335	PF12698	ABC-2 family transporter protein
A3L04_00340	PF00005	ABC transporter
A3L04_00340	PF13732	A3L04_00340
A3L04_00345	PF10096	A3L04_00345
A3L04_00350	PF01569	PAP2 superfamily
A3L04_00355	PF02347	Glycine cleavage system P-protein
A3L04_00360	PF02347	Glycine cleavage system P-protein
A3L04_00365	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_00375	PF00692	dUTPase
A3L04_00385	PF00428	60s Acidic ribosomal protein
A3L04_00390	PF00428	60s Acidic ribosomal protein
A3L04_00390	PF00466	Ribosomal protein L10
A3L04_00395	PF00687	Ribosomal protein L1p/L10e family
A3L04_00400	PF00298	Ribosomal protein L11, RNA binding domain
A3L04_00400	PF03946	Ribosomal protein L11, N-terminal domain
A3L04_00405	PF00467	KOW motif
A3L04_00405	PF03439	Early transcription elongation factor of RNA pol II, NGN section
A3L04_00415	PF00091	Tubulin/FtsZ family, GTPase domain
A3L04_00415	PF12327	FtsZ family, C-terminal domain
A3L04_00430	PF04414	D-aminoacyl-tRNA deacylase
A3L04_00440	PF01909	Nucleotidyltransferase domain
A3L04_00460	PF01871	AMMECR1
A3L04_00465	PF00005	ABC transporter
A3L04_00485	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
A3L04_00485	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
A3L04_00490	PF13173	AAA domain
A3L04_00495	PF02445	Quinolinate synthetase A protein
A3L04_00500	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A3L04_00500	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
A3L04_00505	PF00890	FAD binding domain
A3L04_00505	PF02910	Fumarate reductase flavoprotein C-term
A3L04_00510	PF14010	Phosphoenolpyruvate carboxylase
A3L04_00515	PF00118	TCP-1/cpn60 chaperonin family
A3L04_00525	PF04055	Radical SAM superfamily
A3L04_00525	PF13353	4Fe-4S single cluster domain
A3L04_00530	PF13597	Anaerobic ribonucleoside-triphosphate reductase
A3L04_00535	PF00005	ABC transporter
A3L04_00535	PF08402	TOBE domain
A3L04_00540	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_00545	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_00550	PF13416	Bacterial extracellular solute-binding protein
A3L04_00555	PF13424	Tetratricopeptide repeat
A3L04_00560	PF00736	EF-1 guanine nucleotide exchange domain
A3L04_00565	PF07754	A3L04_00565
A3L04_00570	PF01370	NAD dependent epimerase/dehydratase family
A3L04_00575	PF01040	UbiA prenyltransferase family
A3L04_00585	PF01925	A3L04_00585
A3L04_00590	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
A3L04_00590	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_00595	PF01637	Archaeal ATPase
A3L04_00595	PF03008	A3L04_00595
A3L04_00620	PF00248	Aldo/keto reductase family
A3L04_00625	PF05124	A3L04_00625
A3L04_00625	PF16286	A3L04_00625
A3L04_00635	PF12804	MobA-like NTP transferase domain
A3L04_00640	PF09968	Uncharacterized protein domain (DUF2202)
A3L04_00645	PF14358	A3L04_00645
A3L04_00650	PF12840	Helix-turn-helix domain
A3L04_00660	PF01676	Metalloenzyme superfamily
A3L04_00660	PF10143	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
A3L04_00665	PF00145	C-5 cytosine-specific DNA methylase
A3L04_00670	PF13656	RNA polymerase Rpb3/Rpb11 dimerisation domain
A3L04_00675	PF09840	A3L04_00675
A3L04_00680	PF10447	Exosome component EXOSC1/CSL4
A3L04_00680	PF14382	Exosome complex exonuclease RRP4 N-terminal region
A3L04_00685	PF00270	DEAD/DEAH box helicase
A3L04_00685	PF00271	Helicase conserved C-terminal domain
A3L04_00690	PF01037	AsnC family
A3L04_00690	PF13404	AsnC-type helix-turn-helix domain
A3L04_00695	PF01978	Sugar-specific transcriptional regulator TrmB
A3L04_00700	PF07883	Cupin domain
A3L04_00705	PF04389	Peptidase family M28
A3L04_00710	PF00535	Glycosyl transferase family 2
A3L04_00710	PF04138	A3L04_00710
A3L04_00715	PF01269	Fibrillarin
A3L04_00720	PF01798	Putative snoRNA binding domain
A3L04_00725	PF00677	Lumazine binding domain
A3L04_00730	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
A3L04_00730	PF01872	RibD C-terminal domain
A3L04_00740	PF01850	PIN domain
A3L04_00745	PF04014	Antidote-toxin recognition MazE
A3L04_00750	PF01850	PIN domain
A3L04_00780	PF00885	6,7-dimethyl-8-ribityllumazine synthase
A3L04_00785	PF00925	GTP cyclohydrolase II
A3L04_00785	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
A3L04_00795	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_00810	PF00899	ThiF family
A3L04_00815	PF01230	HIT domain
A3L04_00820	PF00312	Ribosomal protein S15
A3L04_00820	PF08069	Ribosomal S13/S15 N-terminal domain
A3L04_00825	PF02272	DHHA1 domain
A3L04_00835	PF01015	Ribosomal S3Ae family
A3L04_00840	PF13412	Winged helix-turn-helix DNA-binding
A3L04_00845	PF03819	MazG nucleotide pyrophosphohydrolase domain
A3L04_00850	PF01022	Bacterial regulatory protein, arsR family
A3L04_00855	PF10869	Protein of unknown function (DUF2666)
A3L04_00860	PF13367	A3L04_00860
A3L04_00875	PF00710	Asparaginase
A3L04_00880	PF13680	Protein of unknown function (DUF4152)
A3L04_00890	PF08323	Starch synthase catalytic domain
A3L04_00890	PF13692	Glycosyl transferases group 1
A3L04_00895	PF01949	Protein of unknown function DUF99
A3L04_00905	PF01936	NYN domain
A3L04_00910	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
A3L04_00915	PF05763	A3L04_00915
A3L04_00920	PF03576	Peptidase family S58
A3L04_00935	PF02237	Biotin protein ligase C terminal domain
A3L04_00935	PF03099	Biotin/lipoate A/B protein ligase family
A3L04_00940	PF03477	ATP cone domain
A3L04_00950	PF13531	Bacterial extracellular solute-binding protein
A3L04_00955	PF04191	Phospholipid methyltransferase
A3L04_00960	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_00970	PF11536	Protein of unknown function (DUF3226)
A3L04_00975	PF00005	ABC transporter
A3L04_00975	PF03459	TOBE domain
A3L04_00980	PF02632	BioY family
A3L04_00985	PF03099	Biotin/lipoate A/B protein ligase family
A3L04_00985	PF08279	HTH domain
A3L04_00990	PF01885	RNA 2'-phosphotransferase, Tpt1 / KptA family
A3L04_01000	PF01966	HD domain
A3L04_01005	PF03750	A3L04_01005
A3L04_01010	PF03787	RAMP superfamily
A3L04_01015	PF03787	RAMP superfamily
A3L04_01020	PF03787	RAMP superfamily
A3L04_01025	PF09455	CRISPR-associated (Cas) DxTHG family
A3L04_01040	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
A3L04_01045	PF09704	CRISPR-associated protein (Cas_Cas5)
A3L04_01050	PF01867	CRISPR associated protein Cas1
A3L04_01055	PF09827	CRISPR associated protein Cas2
A3L04_01060	PF01930	Domain of unknown function DUF83
A3L04_01065	PF00271	Helicase conserved C-terminal domain
A3L04_01065	PF01966	HD domain
A3L04_01075	PF13087	AAA domain
A3L04_01075	PF13604	AAA domain
A3L04_01080	PF01411	tRNA synthetases class II (A)
A3L04_01080	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A3L04_01095	PF00571	CBS domain
A3L04_01100	PF00149	Calcineurin-like phosphoesterase
A3L04_01100	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_01105	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
A3L04_01110	PF13230	Glutamine amidotransferases class-II
A3L04_01115	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_01120	PF01909	Nucleotidyltransferase domain
A3L04_01120	PF09249	tRNA nucleotidyltransferase, second domain
A3L04_01125	PF02834	LigT like Phosphoesterase
A3L04_01130	PF01637	Archaeal ATPase
A3L04_01135	PF00753	Metallo-beta-lactamase superfamily
A3L04_01145	PF00156	Phosphoribosyl transferase domain
A3L04_01150	PF13173	AAA domain
A3L04_01155	PF04055	Radical SAM superfamily
A3L04_01170	PF01637	Archaeal ATPase
A3L04_01175	PF00391	PEP-utilising enzyme, mobile domain
A3L04_01175	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
A3L04_01175	PF02896	PEP-utilising enzyme, TIM barrel domain
A3L04_01185	PF01901	A3L04_01185
A3L04_01195	PF06508	Queuosine biosynthesis protein QueC
A3L04_01210	PF02926	THUMP domain
A3L04_01215	PF00491	Arginase family
A3L04_01220	PF01791	DeoC/LacD family aldolase
A3L04_01230	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
A3L04_01230	PF04060	Putative Fe-S cluster
A3L04_01235	PF00800	Prephenate dehydratase
A3L04_01235	PF01842	ACT domain
A3L04_01240	PF00079	Serpin (serine protease inhibitor)
A3L04_01250	PF05971	Protein of unknown function (DUF890)
A3L04_01260	PF00571	CBS domain
A3L04_01265	PF01472	PUA domain
A3L04_01265	PF01507	Phosphoadenosine phosphosulfate reductase family
A3L04_01265	PF12838	4Fe-4S dicluster domain
A3L04_01270	PF00152	tRNA synthetases class II (D, K and N)
A3L04_01275	PF00156	Phosphoribosyl transferase domain
A3L04_01285	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
A3L04_01290	PF03308	ArgK protein
A3L04_01295	PF02310	B12 binding domain
A3L04_01300	PF00733	Asparagine synthase
A3L04_01310	PF01368	DHH family
A3L04_01310	PF02254	TrkA-N domain
A3L04_01310	PF02272	DHHA1 domain
A3L04_01315	PF00809	Pterin binding enzyme
A3L04_01325	PF03657	Uncharacterised protein family (UPF0113)
A3L04_01330	PF01972	Serine dehydrogenase proteinase
A3L04_01335	PF04458	A3L04_01335
A3L04_01345	PF06745	KaiC
A3L04_01350	PF02675	S-adenosylmethionine decarboxylase
A3L04_01355	PF01940	A3L04_01355
A3L04_01360	PF12706	Beta-lactamase superfamily domain
A3L04_01365	PF01873	Domain found in IF2B/IF5
A3L04_01370	PF06197	A3L04_01370
A3L04_01375	PF00881	Nitroreductase family
A3L04_01380	PF02254	TrkA-N domain
A3L04_01380	PF07885	Ion channel
A3L04_01385	PF08423	Rad51
A3L04_01385	PF14520	Helix-hairpin-helix domain
A3L04_01395	PF02926	THUMP domain
A3L04_01395	PF14419	AF2226-like SPOUT RNA Methylase fused to THUMP
A3L04_01400	PF01472	PUA domain
A3L04_01410	PF00005	ABC transporter
A3L04_01415	PF02361	Cobalt transport protein
A3L04_01425	PF01889	A3L04_01425
A3L04_01430	PF01939	Protein of unknown function DUF91
A3L04_01435	PF04322	A3L04_01435
A3L04_01440	PF09754	PAC2 family
A3L04_01445	PF01637	Archaeal ATPase
A3L04_01455	PF01048	Phosphorylase superfamily
A3L04_01460	PF00004	ATPase family associated with various cellular activities (AAA)
A3L04_01460	PF09079	CDC6, C terminal
A3L04_01465	PF00149	Calcineurin-like phosphoesterase
A3L04_01470	PF03833	DNA polymerase II large subunit DP2
A3L04_01470	PF14528	LAGLIDADG-like domain
A3L04_01470	PF14890	Intein splicing domain
A3L04_01475	PF13483	Beta-lactamase superfamily domain
A3L04_01480	PF08423	Rad51
A3L04_01485	PF01637	Archaeal ATPase
A3L04_01485	PF03008	A3L04_01485
A3L04_01490	PF04167	Protein of unknown function (DUF402)
A3L04_01490	PF10150	Ribonuclease E/G family
A3L04_01500	PF05763	A3L04_01500
A3L04_01505	PF02475	Met-10+ like-protein
A3L04_01510	PF04055	Radical SAM superfamily
A3L04_01510	PF06463	Molybdenum Cofactor Synthesis C
A3L04_01510	PF13353	4Fe-4S single cluster domain
A3L04_01515	PF12679	A3L04_01515
A3L04_01530	PF01944	A3L04_01530
A3L04_01550	PF01944	A3L04_01550
A3L04_01555	PF00004	ATPase family associated with various cellular activities (AAA)
A3L04_01560	PF05496	Holliday junction DNA helicase ruvB N-terminus
A3L04_01560	PF08542	Replication factor C C-terminal domain
A3L04_01560	PF13177	DNA polymerase III, delta subunit
A3L04_01560	PF14528	LAGLIDADG-like domain
A3L04_01560	PF14890	Intein splicing domain
A3L04_01565	PF04307	A3L04_01565
A3L04_01570	PF00085	Thioredoxin
A3L04_01570	PF13192	Thioredoxin domain
A3L04_01575	PF12840	Helix-turn-helix domain
A3L04_01580	PF00890	FAD binding domain
A3L04_01580	PF01494	FAD binding domain
A3L04_01585	PF02540	NAD synthase
A3L04_01590	PF10602	26S proteasome subunit RPN7
A3L04_01595	PF02391	MoaE protein
A3L04_01600	PF13186	Iron-sulfur cluster-binding domain
A3L04_01605	PF06745	KaiC
A3L04_01610	PF06745	KaiC
A3L04_01620	PF01970	A3L04_01620
A3L04_01630	PF00596	Class II Aldolase and Adducin N-terminal domain
A3L04_01640	PF01896	Eukaryotic and archaeal DNA primase small subunit
A3L04_01645	PF04104	Eukaryotic and archaeal DNA primase, large subunit
A3L04_01650	PF16575	A3L04_01650
A3L04_01655	PF01037	AsnC family
A3L04_01655	PF12802	MarR family
A3L04_01660	PF01926	50S ribosome-binding GTPase
A3L04_01665	PF07690	Major Facilitator Superfamily
A3L04_01670	PF00004	ATPase family associated with various cellular activities (AAA)
A3L04_01670	PF16450	A3L04_01670
A3L04_01675	PF00005	ABC transporter
A3L04_01685	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_01690	PF01547	Bacterial extracellular solute-binding protein
A3L04_01695	PF00155	Aminotransferase class I and II
A3L04_01700	PF01008	Initiation factor 2 subunit family
A3L04_01705	PF03686	Uncharacterised protein family (UPF0146)
A3L04_01710	PF01978	Sugar-specific transcriptional regulator TrmB
A3L04_01710	PF11495	Archaeal transcriptional regulator TrmB
A3L04_01715	PF05239	PRC-barrel domain
A3L04_01720	PF00271	Helicase conserved C-terminal domain
A3L04_01720	PF04851	Type III restriction enzyme, res subunit
A3L04_01725	PF01564	Spermine/spermidine synthase
A3L04_01725	PF17284	A3L04_01725
A3L04_01735	PF04307	A3L04_01735
A3L04_01740	PF01914	A3L04_01740
A3L04_01745	PF03168	Late embryogenesis abundant protein
A3L04_01765	PF09910	A3L04_01765
A3L04_01770	PF04017	Domain of unknown function (DUF366)
A3L04_01780	PF01921	tRNA synthetases class I (K)
A3L04_01790	PF13649	Methyltransferase domain
A3L04_01795	PF08544	GHMP kinases C terminal
A3L04_01800	PF07318	A3L04_01800
A3L04_01805	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
A3L04_01810	PF07690	Major Facilitator Superfamily
A3L04_01815	PF01895	PhoU domain
A3L04_01815	PF04014	Antidote-toxin recognition MazE
A3L04_01820	PF01112	Asparaginase
A3L04_01825	PF07690	Major Facilitator Superfamily
A3L04_01835	PF01895	PhoU domain
A3L04_01835	PF02080	TrkA-C domain
A3L04_01840	PF01895	PhoU domain
A3L04_01840	PF02080	TrkA-C domain
A3L04_01845	PF13561	Enoyl-(Acyl carrier protein) reductase
A3L04_01860	PF01987	Mitochondrial biogenesis AIM24
A3L04_01865	PF01259	SAICAR synthetase
A3L04_01870	PF00156	Phosphoribosyl transferase domain
A3L04_01870	PF13537	Glutamine amidotransferase domain
A3L04_01885	PF00152	tRNA synthetases class II (D, K and N)
A3L04_01885	PF01336	OB-fold nucleic acid binding domain
A3L04_01895	PF13231	A3L04_01895
A3L04_01900	PF01380	SIS domain
A3L04_01900	PF13522	Glutamine amidotransferase domain
A3L04_01910	PF00227	Proteasome subunit
A3L04_01915	PF01523	Putative modulator of DNA gyrase
A3L04_01920	PF01523	Putative modulator of DNA gyrase
A3L04_01925	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_01930	PF12822	Protein of unknown function (DUF3816)
A3L04_01935	PF00266	Aminotransferase class-V
A3L04_01940	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_01945	PF03641	Possible lysine decarboxylase
A3L04_01950	PF02163	Peptidase family M50
A3L04_01950	PF13180	PDZ domain
A3L04_01955	PF11447	Protein of unknown function (DUF3201)
A3L04_01960	PF01189	NOL1/NOP2/sun family
A3L04_01960	PF01472	PUA domain
A3L04_01965	PF03706	A3L04_01965
A3L04_01970	PF05763	A3L04_01970
A3L04_01975	PF00814	Glycoprotease family
A3L04_01980	PF02355	Protein export membrane protein
A3L04_01985	PF02355	Protein export membrane protein
A3L04_01985	PF07549	SecD/SecF GG Motif
A3L04_01990	PF02080	TrkA-C domain
A3L04_01990	PF02254	TrkA-N domain
A3L04_01995	PF16999	A3L04_01995
A3L04_02000	PF01496	V-type ATPase 116kDa subunit family
A3L04_02005	PF00137	ATP synthase subunit C
A3L04_02010	PF01991	ATP synthase (E/31 kDa) subunit
A3L04_02015	PF01992	ATP synthase (C/AC39) subunit
A3L04_02020	PF01990	ATP synthase (F/14-kDa) subunit
A3L04_02025	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A3L04_02025	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A3L04_02025	PF16886	A3L04_02025
A3L04_02030	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A3L04_02030	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A3L04_02035	PF01813	ATP synthase subunit D
A3L04_02040	PF00753	Metallo-beta-lactamase superfamily
A3L04_02045	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A3L04_02050	PF01411	tRNA synthetases class II (A)
A3L04_02050	PF02272	DHHA1 domain
A3L04_02050	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A3L04_02055	PF06508	Queuosine biosynthesis protein QueC
A3L04_02060	PF04055	Radical SAM superfamily
A3L04_02065	PF00175	Oxidoreductase NAD-binding domain
A3L04_02065	PF00970	Oxidoreductase FAD-binding domain
A3L04_02065	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
A3L04_02070	PF01979	Amidohydrolase family
A3L04_02075	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A3L04_02080	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_02085	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_02085	PF12911	A3L04_02085
A3L04_02090	PF00005	ABC transporter
A3L04_02090	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_02095	PF00005	ABC transporter
A3L04_02095	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_02105	PF06560	Glucose-6-phosphate isomerase (GPI)
A3L04_02110	PF02700	Phosphoribosylformylglycinamidine (FGAM) synthase
A3L04_02115	PF13507	CobB/CobQ-like glutamine amidotransferase domain
A3L04_02120	PF05124	A3L04_02120
A3L04_02125	PF00586	AIR synthase related protein, N-terminal domain
A3L04_02125	PF02769	AIR synthase related protein, C-terminal domain
A3L04_02130	PF00821	Phosphoenolpyruvate carboxykinase
A3L04_02130	PF17297	A3L04_02130
A3L04_02135	PF01883	Domain of unknown function DUF59
A3L04_02140	PF02915	Rubrerythrin
A3L04_02145	PF00764	Arginosuccinate synthase
A3L04_02150	PF00206	Lyase
A3L04_02155	PF08443	RimK-like ATP-grasp domain
A3L04_02160	PF04055	Radical SAM superfamily
A3L04_02165	PF05175	Methyltransferase small domain
A3L04_02170	PF01850	PIN domain
A3L04_02180	PF00136	DNA polymerase family B
A3L04_02180	PF03104	DNA polymerase family B, exonuclease domain
A3L04_02185	PF12706	Beta-lactamase superfamily domain
A3L04_02195	PF00113	Enolase, C-terminal TIM barrel domain
A3L04_02195	PF03952	Enolase, N-terminal domain
A3L04_02200	PF02545	Maf-like protein
A3L04_02205	PF00935	Ribosomal protein L44
A3L04_02210	PF01667	Ribosomal protein S27
A3L04_02215	PF01242	6-pyruvoyl tetrahydropterin synthase
A3L04_02220	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L04_02220	PF01380	SIS domain
A3L04_02230	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_02240	PF14336	Domain of unknown function (DUF4392)
A3L04_02245	PF01966	HD domain
A3L04_02250	PF00583	Acetyltransferase (GNAT) family
A3L04_02260	PF01022	Bacterial regulatory protein, arsR family
A3L04_02265	PF02680	Uncharacterized ArCR, COG1888
A3L04_02270	PF12840	Helix-turn-helix domain
A3L04_02275	PF13380	CoA binding domain
A3L04_02275	PF13607	Succinyl-CoA ligase like flavodoxin domain
A3L04_02280	PF05763	A3L04_02280
A3L04_02285	PF00132	Bacterial transferase hexapeptide (six repeats)
A3L04_02285	PF00483	Nucleotidyl transferase
A3L04_02290	PF00156	Phosphoribosyl transferase domain
A3L04_02290	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
A3L04_02295	PF04266	ASCH domain
A3L04_02300	PF03685	Uncharacterised protein family (UPF0147)
A3L04_02305	PF00579	tRNA synthetases class I (W and Y)
A3L04_02320	PF04008	Adenosine specific kinase
A3L04_02325	PF01725	Ham1 family
A3L04_02330	PF01037	AsnC family
A3L04_02330	PF13412	Winged helix-turn-helix DNA-binding
A3L04_02335	PF01472	PUA domain
A3L04_02335	PF10672	S-adenosylmethionine-dependent methyltransferase
A3L04_02340	PF00582	Universal stress protein family
A3L04_02345	PF03600	Citrate transporter
A3L04_02355	PF01599	Ribosomal protein S27a
A3L04_02360	PF01282	Ribosomal protein S24e
A3L04_02365	PF04019	A3L04_02365
A3L04_02370	PF06093	Spt4/RpoE2 zinc finger
A3L04_02375	PF00575	S1 RNA binding domain
A3L04_02375	PF03876	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
A3L04_02380	PF00719	Inorganic pyrophosphatase
A3L04_02385	PF01261	Xylose isomerase-like TIM barrel
A3L04_02390	PF01910	Domain of unknown function DUF77
A3L04_02395	PF04123	A3L04_02395
A3L04_02405	PF03176	MMPL family
A3L04_02410	PF01047	MarR family
A3L04_02425	PF03129	Anticodon binding domain
A3L04_02425	PF13393	Histidyl-tRNA synthetase
A3L04_02430	PF00155	Aminotransferase class I and II
A3L04_02440	PF01974	tRNA intron endonuclease, catalytic C-terminal domain
A3L04_02440	PF02778	tRNA intron endonuclease, N-terminal domain
A3L04_02445	PF00583	Acetyltransferase (GNAT) family
A3L04_02455	PF01411	tRNA synthetases class II (A)
A3L04_02455	PF02272	DHHA1 domain
A3L04_02455	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A3L04_02475	PF03065	Glycosyl hydrolase family 57
A3L04_02475	PF09094	Domain of unknown function (DUF1925)
A3L04_02475	PF09095	Domain of unknown function (DUF1926)
A3L04_02480	PF10131	A3L04_02480
A3L04_02490	PF13632	Glycosyl transferase family group 2
A3L04_02500	PF01171	PP-loop family
A3L04_02505	PF00999	Sodium/hydrogen exchanger family
A3L04_02510	PF01946	Thi4 family
A3L04_02520	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_02525	PF00708	Acylphosphatase
A3L04_02535	PF00478	IMP dehydrogenase / GMP reductase domain
A3L04_02535	PF00571	CBS domain
A3L04_02540	PF01943	A3L04_02540
A3L04_02540	PF14667	Polysaccharide biosynthesis C-terminal domain
A3L04_02545	PF14528	LAGLIDADG-like domain
A3L04_02555	PF01493	GXGXG motif
A3L04_02560	PF01645	Conserved region in glutamate synthase
A3L04_02560	PF13187	4Fe-4S dicluster domain
A3L04_02565	PF00310	Glutamine amidotransferases class-II
A3L04_02570	PF00285	Citrate synthase
A3L04_02575	PF00180	Isocitrate/isopropylmalate dehydrogenase
A3L04_02580	PF00330	Aconitase family (aconitate hydratase)
A3L04_02580	PF00694	Aconitase C-terminal domain
A3L04_02585	PF01256	Carbohydrate kinase
A3L04_02585	PF03853	YjeF-related protein N-terminus
A3L04_02590	PF00534	Glycosyl transferases group 1
A3L04_02590	PF13439	Glycosyltransferase Family 4
A3L04_02595	PF00534	Glycosyl transferases group 1
A3L04_02595	PF13439	Glycosyltransferase Family 4
A3L04_02600	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
A3L04_02600	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
A3L04_02600	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
A3L04_02605	PF00483	Nucleotidyl transferase
A3L04_02610	PF00534	Glycosyl transferases group 1
A3L04_02615	PF00534	Glycosyl transferases group 1
A3L04_02620	PF00534	Glycosyl transferases group 1
A3L04_02620	PF13439	Glycosyltransferase Family 4
A3L04_02630	PF01850	PIN domain
A3L04_02635	PF01850	PIN domain
A3L04_02640	PF01954	Protein of unknown function DUF104
A3L04_02645	PF01943	A3L04_02645
A3L04_02650	PF00535	Glycosyl transferase family 2
A3L04_02655	PF00534	Glycosyl transferases group 1
A3L04_02655	PF13439	Glycosyltransferase Family 4
A3L04_02665	PF00535	Glycosyl transferase family 2
A3L04_02670	PF00534	Glycosyl transferases group 1
A3L04_02670	PF13439	Glycosyltransferase Family 4
A3L04_02675	PF02224	Cytidylate kinase
A3L04_02675	PF14907	Uncharacterised nucleotidyltransferase
A3L04_02690	PF13231	A3L04_02690
A3L04_02695	PF00534	Glycosyl transferases group 1
A3L04_02695	PF13439	Glycosyltransferase Family 4
A3L04_02700	PF00535	Glycosyl transferase family 2
A3L04_02705	PF02516	Oligosaccharyl transferase STT3 subunit
A3L04_02725	PF01850	PIN domain
A3L04_02740	PF03547	A3L04_02740
A3L04_02755	PF01902	ATP-binding region
A3L04_02760	PF03787	RAMP superfamily
A3L04_02765	PF12469	CRISPR-associated protein
A3L04_02770	PF09700	CRISPR-associated protein (Cas_Cmr3)
A3L04_02780	PF09620	A3L04_02780
A3L04_02785	PF03787	RAMP superfamily
A3L04_02790	PF09701	CRISPR-associated protein (Cas_Cmr5)
A3L04_02795	PF03787	RAMP superfamily
A3L04_02805	PF01145	SPFH domain / Band 7 family
A3L04_02810	PF01957	NfeD-like C-terminal, partner-binding
A3L04_02820	PF01699	Sodium/calcium exchanger protein
A3L04_02830	PF01584	CheW-like domain
A3L04_02835	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A3L04_02840	PF01739	CheR methyltransferase, SAM binding domain
A3L04_02840	PF03705	CheR methyltransferase, all-alpha domain
A3L04_02845	PF00072	Response regulator receiver domain
A3L04_02850	PF00072	Response regulator receiver domain
A3L04_02850	PF01339	CheB methylesterase
A3L04_02855	PF01584	CheW-like domain
A3L04_02855	PF01627	Hpt domain
A3L04_02855	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A3L04_02855	PF02895	Signal transducing histidine kinase, homodimeric domain
A3L04_02855	PF07194	P2 response regulator binding domain
A3L04_02860	PF04509	CheC-like family
A3L04_02865	PF04509	CheC-like family
A3L04_02865	PF13690	Chemotaxis phosphatase CheX
A3L04_02870	PF03975	CheD chemotactic sensory transduction
A3L04_02875	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A3L04_02875	PF00672	HAMP domain
A3L04_02875	PF02743	Cache domain
A3L04_02885	PF04283	A3L04_02885
A3L04_02890	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_02895	PF05161	MOFRL family
A3L04_02895	PF13660	Domain of unknown function (DUF4147)
A3L04_02900	PF09414	RNA ligase
A3L04_02905	PF02585	GlcNAc-PI de-N-acetylase
A3L04_02920	PF00232	Glycosyl hydrolase family 1
A3L04_02925	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A3L04_02930	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_02935	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_02940	PF00005	ABC transporter
A3L04_02940	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_02945	PF00005	ABC transporter
A3L04_02945	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_02950	PF00150	Cellulase (glycosyl hydrolase family 5)
A3L04_02960	PF00005	ABC transporter
A3L04_02965	PF01032	FecCD transport family
A3L04_02970	PF01497	Periplasmic binding protein
A3L04_02975	PF08241	Methyltransferase domain
A3L04_02980	PF08704	tRNA methyltransferase complex GCD14 subunit
A3L04_02980	PF14801	tRNA methyltransferase complex GCD14 subunit N-term
A3L04_02985	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_02990	PF01922	SRP19 protein
A3L04_02995	PF01037	AsnC family
A3L04_03000	PF04894	A3L04_03000
A3L04_03000	PF04895	A3L04_03000
A3L04_03005	PF00571	CBS domain
A3L04_03010	PF12760	Transposase zinc-ribbon domain
A3L04_03015	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_03020	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A3L04_03030	PF00005	ABC transporter
A3L04_03030	PF13732	A3L04_03030
A3L04_03035	PF01061	A3L04_03035
A3L04_03040	PF01061	A3L04_03040
A3L04_03045	PF00294	pfkB family carbohydrate kinase
A3L04_03050	PF00011	Hsp20/alpha crystallin family
A3L04_03055	PF00004	ATPase family associated with various cellular activities (AAA)
A3L04_03055	PF02359	Cell division protein 48 (CDC48), N-terminal domain
A3L04_03055	PF02933	Cell division protein 48 (CDC48), domain 2
A3L04_03055	PF09336	Vps4 C terminal oligomerisation domain
A3L04_03065	PF01918	Alba
A3L04_03070	PF08745	UPF0278 family
A3L04_03075	PF13429	Tetratricopeptide repeat
A3L04_03080	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
A3L04_03080	PF09153	Domain of unknown function (DUF1938)
A3L04_03085	PF00586	AIR synthase related protein, N-terminal domain
A3L04_03085	PF02769	AIR synthase related protein, C-terminal domain
A3L04_03090	PF07155	ECF-type riboflavin transporter, S component
A3L04_03095	PF08967	Domain of unknown function (DUF1884)
A3L04_03100	PF01113	Dihydrodipicolinate reductase, N-terminus
A3L04_03100	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
A3L04_03115	PF01247	Ribosomal protein L35Ae
A3L04_03120	PF02005	N2,N2-dimethylguanosine tRNA methyltransferase
A3L04_03130	PF00288	GHMP kinases N terminal domain
A3L04_03135	PF00589	Phage integrase family
A3L04_03135	PF02899	Phage integrase, N-terminal SAM-like domain
A3L04_03140	PF01751	Toprim domain
A3L04_03145	PF01941	S-adenosylmethionine synthetase (AdoMet synthetase)
A3L04_03150	PF05763	A3L04_03150
A3L04_03155	PF00398	Ribosomal RNA adenine dimethylase
A3L04_03160	PF04919	Protein of unknown function (DUF655)
A3L04_03165	PF05343	M42 glutamyl aminopeptidase
A3L04_03170	PF07998	Peptidase family M54
A3L04_03175	PF01928	CYTH domain
A3L04_03180	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_03185	PF00005	ABC transporter
A3L04_03190	PF02386	Cation transport protein
A3L04_03195	PF01336	OB-fold nucleic acid binding domain
A3L04_03195	PF08489	Domain of unknown function (DUF1743)
A3L04_03200	PF01967	MoaC family
A3L04_03210	PF13561	Enoyl-(Acyl carrier protein) reductase
A3L04_03215	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_03220	PF01381	Helix-turn-helix
A3L04_03225	PF01554	MatE
A3L04_03230	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A3L04_03235	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
A3L04_03240	PF01980	Uncharacterised protein family UPF0066
A3L04_03245	PF06068	TIP49 C-terminus
A3L04_03250	PF02517	CAAX protease self-immunity
A3L04_03260	PF04172	A3L04_03260
A3L04_03265	PF03788	A3L04_03265
A3L04_03270	PF02463	RecF/RecN/SMC N terminal domain
A3L04_03270	PF06470	SMC proteins Flexible Hinge Domain
A3L04_03275	PF05168	HEPN domain
A3L04_03280	PF01909	Nucleotidyltransferase domain
A3L04_03285	PF02616	ScpA/B protein
A3L04_03305	PF00117	Glutamine amidotransferase class-I
A3L04_03305	PF06418	CTP synthase N-terminus
A3L04_03310	PF13380	CoA binding domain
A3L04_03310	PF13607	Succinyl-CoA ligase like flavodoxin domain
A3L04_03315	PF13549	ATP-grasp domain
A3L04_03325	PF02568	Thiamine biosynthesis protein (ThiI)
A3L04_03330	PF06197	A3L04_03330
A3L04_03335	PF07998	Peptidase family M54
A3L04_03340	PF02649	Type I GTP cyclohydrolase folE2
A3L04_03345	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
A3L04_03355	PF01966	HD domain
A3L04_03360	PF04472	Protein of unknown function (DUF552)
A3L04_03365	PF00571	CBS domain
A3L04_03370	PF02598	Putative RNA methyltransferase
A3L04_03375	PF00297	Ribosomal protein L3
A3L04_03380	PF00573	Ribosomal protein L4/L1 family
A3L04_03385	PF00276	Ribosomal protein L23
A3L04_03390	PF00181	Ribosomal Proteins L2, RNA binding domain
A3L04_03390	PF03947	Ribosomal Proteins L2, C-terminal domain
A3L04_03395	PF00203	Ribosomal protein S19
A3L04_03400	PF00237	Ribosomal protein L22p/L17e
A3L04_03405	PF00189	Ribosomal protein S3, C-terminal domain
A3L04_03405	PF07650	KH domain
A3L04_03410	PF00831	Ribosomal L29 protein
A3L04_03415	PF01253	Translation initiation factor SUI1
A3L04_03420	PF01868	Domain of unknown function UPF0086
A3L04_03425	PF00366	Ribosomal protein S17
A3L04_03430	PF00238	Ribosomal protein L14p/L23e
A3L04_03435	PF00467	KOW motif
A3L04_03435	PF16906	A3L04_03435
A3L04_03440	PF00900	Ribosomal family S4e
A3L04_03440	PF01479	S4 domain
A3L04_03440	PF08071	RS4NT (NUC023) domain
A3L04_03445	PF00281	Ribosomal protein L5
A3L04_03445	PF00673	ribosomal L5P family C-terminus
A3L04_03450	PF00253	Ribosomal protein S14p/S29e
A3L04_03455	PF00410	Ribosomal protein S8
A3L04_03460	PF00347	Ribosomal protein L6
A3L04_03465	PF01655	Ribosomal protein L32
A3L04_03470	PF01280	Ribosomal protein L19e
A3L04_03475	PF14204	Ribosomal L18 C-terminal region
A3L04_03475	PF17144	A3L04_03475
A3L04_03480	PF00333	Ribosomal protein S5, N-terminal domain
A3L04_03480	PF03719	Ribosomal protein S5, C-terminal domain
A3L04_03485	PF00327	Ribosomal protein L30p/L7e
A3L04_03490	PF00828	Ribosomal protein L18e/L15
A3L04_03495	PF00344	SecY translocase
A3L04_03495	PF10559	Plug domain of Sec61p
A3L04_03500	PF13207	AAA domain
A3L04_03505	PF01956	A3L04_03505
A3L04_03510	PF01266	FAD dependent oxidoreductase
A3L04_03515	PF04324	BFD-like [2Fe-2S] binding domain
A3L04_03520	PF00037	4Fe-4S binding domain
A3L04_03525	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_03525	PF13510	2Fe-2S iron-sulfur cluster binding domain
A3L04_03530	PF00571	CBS domain
A3L04_03530	PF01381	Helix-turn-helix
A3L04_03540	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_03545	PF04410	Gar1/Naf1 RNA binding region
A3L04_03550	PF01022	Bacterial regulatory protein, arsR family
A3L04_03560	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_03565	PF16363	A3L04_03565
A3L04_03570	PF13549	ATP-grasp domain
A3L04_03580	PF05763	A3L04_03580
A3L04_03585	PF07690	Major Facilitator Superfamily
A3L04_03595	PF07690	Major Facilitator Superfamily
A3L04_03620	PF01435	Peptidase family M48
A3L04_03630	PF01637	Archaeal ATPase
A3L04_03630	PF03008	A3L04_03630
A3L04_03630	PF09339	IclR helix-turn-helix domain
A3L04_03640	PF13393	Histidyl-tRNA synthetase
A3L04_03645	PF01634	ATP phosphoribosyltransferase
A3L04_03650	PF00815	Histidinol dehydrogenase
A3L04_03655	PF00475	Imidazoleglycerol-phosphate dehydratase
A3L04_03660	PF06195	A3L04_03660
A3L04_03665	PF06195	A3L04_03665
A3L04_03670	PF00117	Glutamine amidotransferase class-I
A3L04_03675	PF00977	Histidine biosynthesis protein
A3L04_03680	PF00977	Histidine biosynthesis protein
A3L04_03685	PF01502	Phosphoribosyl-AMP cyclohydrolase
A3L04_03685	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
A3L04_03690	PF00155	Aminotransferase class I and II
A3L04_03695	PF04014	Antidote-toxin recognition MazE
A3L04_03700	PF01850	PIN domain
A3L04_03725	PF00892	EamA-like transporter family
A3L04_03730	PF04256	A3L04_03730
A3L04_03735	PF05175	Methyltransferase small domain
A3L04_03750	PF00149	Calcineurin-like phosphoesterase
A3L04_03755	PF00782	Dual specificity phosphatase, catalytic domain
A3L04_03760	PF01177	Asp/Glu/Hydantoin racemase
A3L04_03765	PF00155	Aminotransferase class I and II
A3L04_03770	PF00682	HMGL-like
A3L04_03775	PF00330	Aconitase family (aconitate hydratase)
A3L04_03780	PF00694	Aconitase C-terminal domain
A3L04_03785	PF00180	Isocitrate/isopropylmalate dehydrogenase
A3L04_03795	PF08443	RimK-like ATP-grasp domain
A3L04_03800	PF01118	Semialdehyde dehydrogenase, NAD binding domain
A3L04_03805	PF00696	Amino acid kinase family
A3L04_03810	PF00202	Aminotransferase class-III
A3L04_03815	PF01546	Peptidase family M20/M25/M40
A3L04_03825	PF00456	Transketolase, thiamine diphosphate binding domain
A3L04_03830	PF02779	Transketolase, pyrimidine binding domain
A3L04_03830	PF02780	Transketolase, C-terminal domain
A3L04_03835	PF00793	DAHP synthetase I family
A3L04_03840	PF01761	3-dehydroquinate synthase
A3L04_03845	PF01487	Type I 3-dehydroquinase
A3L04_03850	PF01488	Shikimate / quinate 5-dehydrogenase
A3L04_03850	PF08501	Shikimate dehydrogenase substrate binding domain
A3L04_03855	PF00288	GHMP kinases N terminal domain
A3L04_03860	PF02608	Basic membrane protein
A3L04_03865	PF00005	ABC transporter
A3L04_03870	PF02653	A3L04_03870
A3L04_03875	PF02653	A3L04_03875
A3L04_03880	PF08240	Alcohol dehydrogenase GroES-like domain
A3L04_03880	PF16912	A3L04_03880
A3L04_03885	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_03890	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_03895	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
A3L04_03900	PF01264	Chorismate synthase
A3L04_03905	PF01817	Chorismate mutase type II
A3L04_03910	PF00155	Aminotransferase class I and II
A3L04_03915	PF02153	Prephenate dehydrogenase
A3L04_03920	PF00290	Tryptophan synthase alpha chain
A3L04_03925	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_03930	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
A3L04_03935	PF00117	Glutamine amidotransferase class-I
A3L04_03940	PF00425	chorismate binding enzyme
A3L04_03940	PF04715	Anthranilate synthase component I, N terminal region
A3L04_03945	PF00591	Glycosyl transferase family, a/b domain
A3L04_03945	PF02885	Glycosyl transferase family, helical bundle domain
A3L04_03950	PF00218	Indole-3-glycerol phosphate synthase
A3L04_03955	PF13840	ACT domain
A3L04_03960	PF00117	Glutamine amidotransferase class-I
A3L04_03960	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
A3L04_03965	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A3L04_03965	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A3L04_03970	PF03807	NADP oxidoreductase coenzyme F420-dependent
A3L04_03970	PF14748	Pyrroline-5-carboxylate reductase dimerisation
A3L04_03975	PF04900	Fcf1
A3L04_03980	PF00009	Elongation factor Tu GTP binding domain
A3L04_03980	PF03144	Elongation factor Tu domain 2
A3L04_03980	PF09173	Initiation factor eIF2 gamma, C terminal
A3L04_03985	PF04055	Radical SAM superfamily
A3L04_03985	PF08608	Wyosine base formation
A3L04_03990	PF01965	DJ-1/PfpI family
A3L04_04000	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
A3L04_04005	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
A3L04_04010	PF02310	B12 binding domain
A3L04_04010	PF04055	Radical SAM superfamily
A3L04_04015	PF01751	Toprim domain
A3L04_04020	PF13662	Toprim domain
A3L04_04025	PF00132	Bacterial transferase hexapeptide (six repeats)
A3L04_04025	PF00483	Nucleotidyl transferase
A3L04_04030	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A3L04_04035	PF02223	Thymidylate kinase
A3L04_04040	PF00448	SRP54-type protein, GTPase domain
A3L04_04040	PF02881	SRP54-type protein, helical bundle domain
A3L04_04040	PF02978	Signal peptide binding domain
A3L04_04045	PF01037	AsnC family
A3L04_04050	PF03692	A3L04_04050
A3L04_04055	PF01037	AsnC family
A3L04_04055	PF13412	Winged helix-turn-helix DNA-binding
A3L04_04060	PF00156	Phosphoribosyl transferase domain
A3L04_04060	PF01381	Helix-turn-helix
A3L04_04080	PF00749	tRNA synthetases class I (E and Q), catalytic domain
A3L04_04080	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
A3L04_04105	PF07927	YcfA-like protein
A3L04_04110	PF05683	Fumarase C-terminus
A3L04_04115	PF05681	A3L04_04115
A3L04_04125	PF00106	short chain dehydrogenase
A3L04_04130	PF03551	Transcriptional regulator PadR-like family
A3L04_04135	PF13630	A3L04_04135
A3L04_04140	PF01906	Putative heavy-metal-binding
A3L04_04150	PF03901	A3L04_04150
A3L04_04150	PF13231	A3L04_04150
A3L04_04160	PF01470	Pyroglutamyl peptidase
A3L04_04170	PF01171	PP-loop family
A3L04_04175	PF02080	TrkA-C domain
A3L04_04180	PF07885	Ion channel
A3L04_04185	PF01513	ATP-NAD kinase
A3L04_04195	PF08969	USP8 dimerisation domain
A3L04_04200	PF01926	50S ribosome-binding GTPase
A3L04_04200	PF02824	TGS domain
A3L04_04200	PF16897	A3L04_04200
A3L04_04205	PF13483	Beta-lactamase superfamily domain
A3L04_04210	PF02594	Uncharacterised ACR, YggU family COG1872
A3L04_04215	PF00448	SRP54-type protein, GTPase domain
A3L04_04215	PF02881	SRP54-type protein, helical bundle domain
A3L04_04220	PF12838	4Fe-4S dicluster domain
A3L04_04225	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
A3L04_04225	PF17147	A3L04_04225
A3L04_04230	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_04235	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
A3L04_04240	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
A3L04_04240	PF17147	A3L04_04240
A3L04_04245	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_04250	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
A3L04_04255	PF01497	Periplasmic binding protein
A3L04_04260	PF06695	A3L04_04260
A3L04_04265	PF04266	ASCH domain
A3L04_04270	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_04275	PF00464	Serine hydroxymethyltransferase
A3L04_04280	PF00005	ABC transporter
A3L04_04285	PF00950	A3L04_04285
A3L04_04290	PF01351	Ribonuclease HII
A3L04_04295	PF09594	A3L04_04295
A3L04_04300	PF00994	Probable molybdopterin binding domain
A3L04_04300	PF03453	MoeA N-terminal region (domain I and II)
A3L04_04300	PF03454	MoeA C-terminal region (domain IV)
A3L04_04305	PF04587	ADP-specific Phosphofructokinase/Glucokinase conserved region
A3L04_04310	PF01472	PUA domain
A3L04_04310	PF01509	TruB family pseudouridylate synthase (N terminal domain)
A3L04_04310	PF08068	DKCLD (NUC011) domain
A3L04_04310	PF16198	A3L04_04310
A3L04_04320	PF12646	A3L04_04320
A3L04_04330	PF05175	Methyltransferase small domain
A3L04_04340	PF00416	Ribosomal protein S13/S18
A3L04_04345	PF01479	S4 domain
A3L04_04350	PF00411	Ribosomal protein S11
A3L04_04355	PF01000	RNA polymerase Rpb3/RpoA insert domain
A3L04_04355	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
A3L04_04365	PF17135	A3L04_04365
A3L04_04370	PF00572	Ribosomal protein L13
A3L04_04375	PF00380	Ribosomal protein S9/S16
A3L04_04380	PF01194	RNA polymerases N / 8 kDa subunit
A3L04_04390	PF01192	RNA polymerase Rpb6
A3L04_04395	PF03952	Enolase, N-terminal domain
A3L04_04400	PF00318	Ribosomal protein S2
A3L04_04405	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_04410	PF01875	Memo-like protein
A3L04_04415	PF00288	GHMP kinases N terminal domain
A3L04_04415	PF08544	GHMP kinases C terminal
A3L04_04420	PF00696	Amino acid kinase family
A3L04_04425	PF01068	ATP dependent DNA ligase domain
A3L04_04425	PF04675	DNA ligase N terminus
A3L04_04425	PF04679	ATP dependent DNA ligase C terminal region
A3L04_04430	PF02566	OsmC-like protein
A3L04_04435	PF10437	Bacterial lipoate protein ligase C-terminus
A3L04_04440	PF01944	A3L04_04440
A3L04_04445	PF04007	A3L04_04445
A3L04_04450	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
A3L04_04450	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
A3L04_04450	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
A3L04_04455	PF02350	UDP-N-acetylglucosamine 2-epimerase
A3L04_04465	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_04475	PF04055	Radical SAM superfamily
A3L04_04480	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A3L04_04480	PF03129	Anticodon binding domain
A3L04_04485	PF04167	Protein of unknown function (DUF402)
A3L04_04490	PF04009	A3L04_04490
A3L04_04495	PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
A3L04_04500	PF02568	Thiamine biosynthesis protein (ThiI)
A3L04_04505	PF12706	Beta-lactamase superfamily domain
A3L04_04510	PF09876	A3L04_04510
A3L04_04515	PF01658	Myo-inositol-1-phosphate synthase
A3L04_04515	PF07994	Myo-inositol-1-phosphate synthase
A3L04_04520	PF01139	tRNA-splicing ligase RtcB
A3L04_04520	PF14528	LAGLIDADG-like domain
A3L04_04520	PF14890	Intein splicing domain
A3L04_04525	PF04032	RNAse P Rpr2/Rpp21/SNM1 subunit domain
A3L04_04540	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A3L04_04545	PF09868	A3L04_04545
A3L04_04550	PF00591	Glycosyl transferase family, a/b domain
A3L04_04550	PF02885	Glycosyl transferase family, helical bundle domain
A3L04_04550	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
A3L04_04555	PF00535	Glycosyl transferase family 2
A3L04_04560	PF02597	ThiS family
A3L04_04565	PF00571	CBS domain
A3L04_04570	PF00999	Sodium/hydrogen exchanger family
A3L04_04575	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A3L04_04575	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
A3L04_04580	PF01037	AsnC family
A3L04_04580	PF13412	Winged helix-turn-helix DNA-binding
A3L04_04585	PF00132	Bacterial transferase hexapeptide (six repeats)
A3L04_04590	PF01255	Putative undecaprenyl diphosphate synthase
A3L04_04595	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
A3L04_04600	PF01435	Peptidase family M48
A3L04_04610	PF10066	A3L04_04610
A3L04_04615	PF00535	Glycosyl transferase family 2
A3L04_04620	PF03463	eRF1 domain 1
A3L04_04620	PF03464	eRF1 domain 2
A3L04_04620	PF03465	eRF1 domain 3
A3L04_04625	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_04630	PF04951	D-aminopeptidase
A3L04_04635	PF01155	Hydrogenase expression/synthesis hypA family
A3L04_04640	PF10609	ParA/MinD ATPase like
A3L04_04645	PF00293	NUDIX domain
A3L04_04650	PF00294	pfkB family carbohydrate kinase
A3L04_04655	PF04252	A3L04_04655
A3L04_04660	PF01937	Protein of unknown function DUF89
A3L04_04665	PF00586	AIR synthase related protein, N-terminal domain
A3L04_04665	PF02769	AIR synthase related protein, C-terminal domain
A3L04_04670	PF01594	A3L04_04670
A3L04_04675	PF09638	Ph1570 protein
A3L04_04680	PF01343	Peptidase family S49
A3L04_04685	PF01176	Translation initiation factor 1A / IF-1
A3L04_04690	PF01163	RIO1 family
A3L04_04695	PF00013	KH domain
A3L04_04700	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A3L04_04700	PF09239	Topoisomerase VI B subunit, transducer
A3L04_04705	PF04406	Type IIB DNA topoisomerase
A3L04_04710	PF04409	A3L04_04710
A3L04_04725	PF01523	Putative modulator of DNA gyrase
A3L04_04730	PF01523	Putative modulator of DNA gyrase
A3L04_04745	PF01842	ACT domain
A3L04_04750	PF00227	Proteasome subunit
A3L04_04750	PF10584	Proteasome subunit A N-terminal signature
A3L04_04760	PF14382	Exosome complex exonuclease RRP4 N-terminal region
A3L04_04760	PF15985	A3L04_04760
A3L04_04765	PF01138	3' exoribonuclease family, domain 1
A3L04_04765	PF03725	3' exoribonuclease family, domain 2
A3L04_04770	PF01138	3' exoribonuclease family, domain 1
A3L04_04770	PF03725	3' exoribonuclease family, domain 2
A3L04_04795	PF01191	RNA polymerase Rpb5, C-terminal domain
A3L04_04800	PF00562	RNA polymerase Rpb2, domain 6
A3L04_04800	PF04560	RNA polymerase Rpb2, domain 7
A3L04_04800	PF04561	RNA polymerase Rpb2, domain 2
A3L04_04800	PF04563	RNA polymerase beta subunit
A3L04_04800	PF04565	RNA polymerase Rpb2, domain 3
A3L04_04800	PF04566	RNA polymerase Rpb2, domain 4
A3L04_04800	PF04567	RNA polymerase Rpb2, domain 5
A3L04_04805	PF00623	RNA polymerase Rpb1, domain 2
A3L04_04805	PF04983	RNA polymerase Rpb1, domain 3
A3L04_04805	PF04997	RNA polymerase Rpb1, domain 1
A3L04_04805	PF04998	RNA polymerase Rpb1, domain 5
A3L04_04805	PF05000	RNA polymerase Rpb1, domain 4
A3L04_04810	PF04998	RNA polymerase Rpb1, domain 5
A3L04_04815	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
A3L04_04820	PF07650	KH domain
A3L04_04825	PF00164	Ribosomal protein S12/S23
A3L04_04830	PF00177	Ribosomal protein S7p/S5e
A3L04_04835	PF01981	Peptidyl-tRNA hydrolase PTH2
A3L04_04840	PF01022	Bacterial regulatory protein, arsR family
A3L04_04840	PF01637	Archaeal ATPase
A3L04_04840	PF03008	A3L04_04840
A3L04_04845	PF01142	tRNA pseudouridine synthase D (TruD)
A3L04_04855	PF01189	NOL1/NOP2/sun family
A3L04_04855	PF17125	A3L04_04855
A3L04_04860	PF01037	AsnC family
A3L04_04860	PF13412	Winged helix-turn-helix DNA-binding
A3L04_04865	PF01177	Asp/Glu/Hydantoin racemase
A3L04_04870	PF06032	Protein of unknown function (DUF917)
A3L04_04875	PF06675	A3L04_04875
A3L04_04880	PF07302	A3L04_04880
A3L04_04885	PF02073	Thermophilic metalloprotease (M29)
A3L04_04890	PF03169	A3L04_04890
A3L04_04900	PF00881	Nitroreductase family
A3L04_04910	PF01951	Archease protein family (MTH1598/TM1083)
A3L04_04925	PF09946	A3L04_04925
A3L04_04930	PF01381	Helix-turn-helix
A3L04_04940	PF00005	ABC transporter
A3L04_04945	PF12698	ABC-2 family transporter protein
A3L04_04950	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_04955	PF01137	RNA 3'-terminal phosphate cyclase
A3L04_04955	PF05189	RNA 3'-terminal phosphate cyclase (RTC), insert domain
A3L04_04965	PF05343	M42 glutamyl aminopeptidase
A3L04_04980	PF01849	NAC domain
A3L04_04990	PF13646	HEAT repeats
A3L04_04995	PF01037	AsnC family
A3L04_04995	PF13412	Winged helix-turn-helix DNA-binding
A3L04_05000	PF01423	LSM domain
A3L04_05005	PF01907	Ribosomal protein L37e
A3L04_05010	PF13380	CoA binding domain
A3L04_05010	PF13607	Succinyl-CoA ligase like flavodoxin domain
A3L04_05015	PF01180	Dihydroorotate dehydrogenase
A3L04_05020	PF01979	Amidohydrolase family
A3L04_05025	PF05763	A3L04_05025
A3L04_05030	PF01661	Macro domain
A3L04_05035	PF00343	Carbohydrate phosphorylase
A3L04_05035	PF11897	A3L04_05035
A3L04_05040	PF01145	SPFH domain / Band 7 family
A3L04_05045	PF00574	Clp protease
A3L04_05045	PF01957	NfeD-like C-terminal, partner-binding
A3L04_05050	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A3L04_05050	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_05055	PF01880	Desulfoferrodoxin
A3L04_05060	PF00301	Rubredoxin
A3L04_05065	PF11369	A3L04_05065
A3L04_05070	PF06745	KaiC
A3L04_05075	PF11537	Protein of unknown function (DUF3227)
A3L04_05085	PF00753	Metallo-beta-lactamase superfamily
A3L04_05090	PF00106	short chain dehydrogenase
A3L04_05095	PF01022	Bacterial regulatory protein, arsR family
A3L04_05100	PF01964	ThiC family
A3L04_05105	PF00005	ABC transporter
A3L04_05105	PF00583	Acetyltransferase (GNAT) family
A3L04_05110	PF04430	Protein of unknown function (DUF498/DUF598)
A3L04_05115	PF09019	EcoRII C terminal
A3L04_05120	PF01555	DNA methylase
A3L04_05130	PF01061	A3L04_05130
A3L04_05135	PF00005	ABC transporter
A3L04_05135	PF13732	A3L04_05135
A3L04_05140	PF03551	Transcriptional regulator PadR-like family
A3L04_05160	PF01869	BadF/BadG/BcrA/BcrD ATPase family
A3L04_05170	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_05175	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_05180	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A3L04_05185	PF01380	SIS domain
A3L04_05190	PF13200	A3L04_05190
A3L04_05195	PF04734	Neutral/alkaline non-lysosomal ceramidase
A3L04_05200	PF00246	Zinc carboxypeptidase
A3L04_05205	PF13527	Acetyltransferase (GNAT) domain
A3L04_05210	PF13580	SIS domain
A3L04_05215	PF01979	Amidohydrolase family
A3L04_05220	PF13412	Winged helix-turn-helix DNA-binding
A3L04_05225	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
A3L04_05230	PF01261	Xylose isomerase-like TIM barrel
A3L04_05240	PF01170	Putative RNA methylase family UPF0020
A3L04_05250	PF13412	Winged helix-turn-helix DNA-binding
A3L04_05255	PF01588	Putative tRNA binding domain
A3L04_05255	PF08264	Anticodon-binding domain of tRNA
A3L04_05255	PF09334	tRNA synthetases class I (M)
A3L04_05260	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
A3L04_05265	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_05265	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
A3L04_05270	PF03091	CutA1 divalent ion tolerance protein
A3L04_05275	PF04981	A3L04_05275
A3L04_05280	PF13412	Winged helix-turn-helix DNA-binding
A3L04_05295	PF00578	AhpC/TSA family
A3L04_05295	PF10417	C-terminal domain of 1-Cys peroxiredoxin
A3L04_05315	PF00005	ABC transporter
A3L04_05325	PF00753	Metallo-beta-lactamase superfamily
A3L04_05330	PF04457	A3L04_05330
A3L04_05335	PF00565	Staphylococcal nuclease homologue
A3L04_05345	PF13173	AAA domain
A3L04_05345	PF13635	A3L04_05345
A3L04_05350	PF12802	MarR family
A3L04_05355	PF01878	EVE domain
A3L04_05360	PF00271	Helicase conserved C-terminal domain
A3L04_05360	PF04851	Type III restriction enzyme, res subunit
A3L04_05360	PF08463	A3L04_05360
A3L04_05360	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
A3L04_05365	PF02384	N-6 DNA Methylase
A3L04_05365	PF12161	HsdM N-terminal domain
A3L04_05370	PF01420	Type I restriction modification DNA specificity domain
A3L04_05380	PF01877	RNA binding
A3L04_05385	PF01546	Peptidase family M20/M25/M40
A3L04_05385	PF07687	Peptidase dimerisation domain
A3L04_05390	PF01637	Archaeal ATPase
A3L04_05395	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP)
A3L04_05400	PF13207	AAA domain
A3L04_05405	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A3L04_05405	PF03129	Anticodon binding domain
A3L04_05405	PF09180	Prolyl-tRNA synthetase, C-terminal
A3L04_05410	PF14667	Polysaccharide biosynthesis C-terminal domain
A3L04_05420	PF00270	DEAD/DEAH box helicase
A3L04_05420	PF00271	Helicase conserved C-terminal domain
A3L04_05420	PF09369	A3L04_05420
A3L04_05435	PF01230	HIT domain
A3L04_05440	PF01594	A3L04_05440
A3L04_05445	PF00857	Isochorismatase family
A3L04_05450	PF00742	Homoserine dehydrogenase
A3L04_05450	PF03447	Homoserine dehydrogenase, NAD binding domain
A3L04_05455	PF01513	ATP-NAD kinase
A3L04_05460	PF11667	A3L04_05460
A3L04_05465	PF00348	Polyprenyl synthetase
A3L04_05470	PF00753	Metallo-beta-lactamase superfamily
A3L04_05470	PF07521	RNA-metabolising metallo-beta-lactamase
A3L04_05475	PF01545	Cation efflux family
A3L04_05475	PF16916	A3L04_05475
A3L04_05480	PF03069	Acetamidase/Formamidase family
A3L04_05485	PF02535	A3L04_05485
A3L04_05490	PF02676	Methyltransferase TYW3
A3L04_05495	PF00133	tRNA synthetases class I (I, L, M and V)
A3L04_05495	PF08264	Anticodon-binding domain of tRNA
A3L04_05515	PF05168	HEPN domain
A3L04_05520	PF01637	Archaeal ATPase
A3L04_05525	PF02452	PemK-like protein
A3L04_05550	PF13601	Winged helix DNA-binding domain
A3L04_05555	PF01984	Double-stranded DNA-binding domain
A3L04_05575	PF04242	Protein of unknown function (DUF424)
A3L04_05580	PF02626	Allophanate hydrolase subunit 2
A3L04_05585	PF02682	Allophanate hydrolase subunit 1
A3L04_05590	PF01850	PIN domain
A3L04_05595	PF03746	LamB/YcsF family
A3L04_05600	PF13173	AAA domain
A3L04_05600	PF13635	A3L04_05600
A3L04_05610	PF08544	GHMP kinases C terminal
A3L04_05615	PF09171	Domain of unknown function (DUF1886)
A3L04_05620	PF00005	ABC transporter
A3L04_05625	PF09847	A3L04_05625
A3L04_05640	PF01026	TatD related DNase
A3L04_05650	PF00005	ABC transporter
A3L04_05655	PF01032	FecCD transport family
A3L04_05660	PF01497	Periplasmic binding protein
A3L04_05665	PF01258	Prokaryotic dksA/traR C4-type zinc finger
A3L04_05665	PF02663	FmdE, Molybdenum formylmethanofuran dehydrogenase operon
A3L04_05675	PF01637	Archaeal ATPase
A3L04_05675	PF03008	A3L04_05675
A3L04_05680	PF04326	Divergent AAA domain
A3L04_05680	PF13749	ATP-dependent DNA helicase recG C-terminal
A3L04_05685	PF01061	A3L04_05685
A3L04_05690	PF01061	A3L04_05690
A3L04_05695	PF00005	ABC transporter
A3L04_05700	PF01909	Nucleotidyltransferase domain
A3L04_05705	PF13636	pre-rRNA processing and ribosome biogenesis
A3L04_05715	PF01416	tRNA pseudouridine synthase
A3L04_05725	PF01588	Putative tRNA binding domain
A3L04_05730	PF01973	A3L04_05730
A3L04_05735	PF02554	A3L04_05735
A3L04_05735	PF13722	A3L04_05735
A3L04_05745	PF02374	Anion-transporting ATPase
A3L04_05750	PF01883	Domain of unknown function DUF59
A3L04_05760	PF00334	Nucleoside diphosphate kinase
A3L04_05770	PF06733	DEAD_2
A3L04_05770	PF06777	A3L04_05770
A3L04_05770	PF13307	Helicase C-terminal domain
A3L04_05780	PF00205	Thiamine pyrophosphate enzyme, central domain
A3L04_05780	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_05780	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
A3L04_05785	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
A3L04_05785	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
A3L04_05790	PF00682	HMGL-like
A3L04_05790	PF08502	LeuA allosteric (dimerisation) domain
A3L04_05795	PF00330	Aconitase family (aconitate hydratase)
A3L04_05800	PF00694	Aconitase C-terminal domain
A3L04_05805	PF00180	Isocitrate/isopropylmalate dehydrogenase
A3L04_05810	PF00682	HMGL-like
A3L04_05810	PF08502	LeuA allosteric (dimerisation) domain
A3L04_05815	PF00920	Dehydratase family
A3L04_05825	PF09852	A3L04_05825
A3L04_05830	PF00583	Acetyltransferase (GNAT) family
A3L04_05845	PF00571	CBS domain
A3L04_05845	PF00654	Voltage gated chloride channel
A3L04_05850	PF00004	ATPase family associated with various cellular activities (AAA)
A3L04_05850	PF02359	Cell division protein 48 (CDC48), N-terminal domain
A3L04_05850	PF02933	Cell division protein 48 (CDC48), domain 2
A3L04_05860	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_05865	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
A3L04_05865	PF17147	A3L04_05865
A3L04_05870	PF14697	4Fe-4S dicluster domain
A3L04_05875	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_05880	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
A3L04_05880	PF17147	A3L04_05880
A3L04_05885	PF14697	4Fe-4S dicluster domain
A3L04_05890	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
A3L04_05895	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
A3L04_05895	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
A3L04_05900	PF00108	Thiolase, N-terminal domain
A3L04_05900	PF02803	Thiolase, C-terminal domain
A3L04_05905	PF01796	A3L04_05905
A3L04_05905	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
A3L04_05910	PF01750	Hydrogenase maturation protease
A3L04_05920	PF03956	A3L04_05920
A3L04_05925	PF04473	Transglutaminase-like domain
A3L04_05930	PF01923	Cobalamin adenosyltransferase
A3L04_05935	PF01177	Asp/Glu/Hydantoin racemase
A3L04_05945	PF00083	Sugar (and other) transporter
A3L04_05945	PF07690	Major Facilitator Superfamily
A3L04_05955	PF00705	Proliferating cell nuclear antigen, N-terminal domain
A3L04_05955	PF02747	Proliferating cell nuclear antigen, C-terminal domain
A3L04_05965	PF01096	Transcription factor S-II (TFIIS)
A3L04_05965	PF02150	RNA polymerases M/15 Kd subunit
A3L04_05970	PF01997	Translin family
A3L04_05975	PF04493	Endonuclease V
A3L04_05980	PF01982	Domain of unknown function DUF120
A3L04_05980	PF13545	Crp-like helix-turn-helix domain
A3L04_05985	PF01409	tRNA synthetases class II core domain (F)
A3L04_05990	PF01409	tRNA synthetases class II core domain (F)
A3L04_05990	PF03483	B3/4 domain
A3L04_05990	PF03484	tRNA synthetase B5 domain
A3L04_05995	PF00107	Zinc-binding dehydrogenase
A3L04_05995	PF08240	Alcohol dehydrogenase GroES-like domain
A3L04_06000	PF00482	Type II secretion system (T2SS), protein F
A3L04_06005	PF00482	Type II secretion system (T2SS), protein F
A3L04_06010	PF00437	Type II/IV secretion system protein
A3L04_06010	PF14528	LAGLIDADG-like domain
A3L04_06010	PF14890	Intein splicing domain
A3L04_06020	PF04415	A3L04_06020
A3L04_06030	PF01926	50S ribosome-binding GTPase
A3L04_06035	PF01170	Putative RNA methylase family UPF0020
A3L04_06035	PF02926	THUMP domain
A3L04_06040	PF03222	Tryptophan/tyrosine permease family
A3L04_06045	PF01557	Fumarylacetoacetate (FAA) hydrolase family
A3L04_06050	PF00795	Carbon-nitrogen hydrolase
A3L04_06060	PF00149	Calcineurin-like phosphoesterase
A3L04_06065	PF01384	A3L04_06065
A3L04_06070	PF01865	Protein of unknown function DUF47
A3L04_06075	PF01037	AsnC family
A3L04_06080	PF01406	tRNA synthetases class I (C) catalytic domain
A3L04_06080	PF09190	DALR domain
A3L04_06090	PF04055	Radical SAM superfamily
A3L04_06090	PF13353	4Fe-4S single cluster domain
A3L04_06095	PF01242	6-pyruvoyl tetrahydropterin synthase
A3L04_06100	PF00252	Ribosomal protein L16p/L10e
A3L04_06105	PF01883	Domain of unknown function DUF59
A3L04_06110	PF01769	Divalent cation transporter
A3L04_06115	PF00224	Pyruvate kinase, barrel domain
A3L04_06115	PF02887	Pyruvate kinase, alpha/beta domain
A3L04_06120	PF07690	Major Facilitator Superfamily
A3L04_06125	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A3L04_06125	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_06130	PF01554	MatE
A3L04_06135	PF01554	MatE
A3L04_06145	PF02492	CobW/HypB/UreG, nucleotide-binding domain
A3L04_06165	PF01894	Uncharacterised protein family UPF0047
A3L04_06170	PF02597	ThiS family
A3L04_06175	PF00994	Probable molybdopterin binding domain
A3L04_06175	PF03453	MoeA N-terminal region (domain I and II)
A3L04_06175	PF03454	MoeA C-terminal region (domain IV)
A3L04_06190	PF00557	Metallopeptidase family M24
A3L04_06195	PF00892	EamA-like transporter family
A3L04_06200	PF10609	ParA/MinD ATPase like
A3L04_06205	PF04266	ASCH domain
A3L04_06210	PF01909	Nucleotidyltransferase domain
A3L04_06215	PF02146	Sir2 family
A3L04_06220	PF01899	A3L04_06220
A3L04_06225	PF04066	A3L04_06225
A3L04_06230	PF03334	A3L04_06230
A3L04_06235	PF13244	A3L04_06235
A3L04_06240	PF04039	A3L04_06240
A3L04_06245	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
A3L04_06250	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_06260	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
A3L04_06260	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
A3L04_06265	PF01769	Divalent cation transporter
A3L04_06270	PF04055	Radical SAM superfamily
A3L04_06275	PF00282	Pyridoxal-dependent decarboxylase conserved domain
A3L04_06285	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_06290	PF01998	A3L04_06290
A3L04_06295	PF00999	Sodium/hydrogen exchanger family
A3L04_06300	PF01935	Domain of unknown function DUF87
A3L04_06300	PF05872	A3L04_06300
A3L04_06300	PF09378	HAS barrel domain
A3L04_06305	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_06310	PF02463	RecF/RecN/SMC N terminal domain
A3L04_06310	PF04423	Rad50 zinc hook motif
A3L04_06315	PF09376	NurA domain
A3L04_06360	PF02183	A3L04_06360
A3L04_06380	PF13643	A3L04_06380
A3L04_06420	PF01935	Domain of unknown function DUF87
A3L04_06470	PF16795	A3L04_06470
A3L04_06475	PF05958	tRNA (Uracil-5-)-methyltransferase
A3L04_06480	PF03061	Thioesterase superfamily
A3L04_06485	PF09999	A3L04_06485
A3L04_06490	PF08241	Methyltransferase domain
A3L04_06495	PF11505	Protein of unknown function (DUF3216)
A3L04_06500	PF01926	50S ribosome-binding GTPase
A3L04_06500	PF13167	A3L04_06500
A3L04_06500	PF16360	A3L04_06500
A3L04_06505	PF01384	A3L04_06505
A3L04_06510	PF01325	Iron dependent repressor, N-terminal DNA binding domain
A3L04_06530	PF00682	HMGL-like
A3L04_06530	PF02436	Conserved carboxylase domain
A3L04_06535	PF01904	Protein of unknown function DUF72
A3L04_06540	PF01546	Peptidase family M20/M25/M40
A3L04_06540	PF07687	Peptidase dimerisation domain
A3L04_06545	PF08543	Phosphomethylpyrimidine kinase
A3L04_06545	PF10120	Putative aldolase
A3L04_06550	PF02581	Thiamine monophosphate synthase/TENI
A3L04_06555	PF02110	Hydroxyethylthiazole kinase family
A3L04_06560	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
A3L04_06565	PF03070	TENA/THI-4/PQQC family
A3L04_06570	PF03070	TENA/THI-4/PQQC family
A3L04_06575	PF01161	Phosphatidylethanolamine-binding protein
A3L04_06580	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_06585	PF03192	Pyrococcus protein of unknown function, DUF257
A3L04_06590	PF01571	Aminomethyltransferase folate-binding domain
A3L04_06590	PF08669	Glycine cleavage T-protein C-terminal barrel domain
A3L04_06600	PF00557	Metallopeptidase family M24
A3L04_06600	PF01321	Creatinase/Prolidase N-terminal domain
A3L04_06605	PF01177	Asp/Glu/Hydantoin racemase
A3L04_06610	PF12706	Beta-lactamase superfamily domain
A3L04_06615	PF01963	A3L04_06615
A3L04_06630	PF00156	Phosphoribosyl transferase domain
A3L04_06635	PF01157	Ribosomal protein L21e
A3L04_06640	PF03874	RNA polymerase Rpb4
A3L04_06655	PF01884	PcrB family
A3L04_06660	PF01986	A3L04_06660
A3L04_06665	PF00013	KH domain
A3L04_06665	PF00437	Type II/IV secretion system protein
A3L04_06675	PF02830	V4R domain
A3L04_06675	PF06745	KaiC
A3L04_06685	PF10015	Uncharacterized protein conserved in archaea (DUF2258)
A3L04_06690	PF00406	Adenylate kinase
A3L04_06690	PF05191	Adenylate kinase, active site lid
A3L04_06695	PF01472	PUA domain
A3L04_06695	PF01702	Queuine tRNA-ribosyltransferase
A3L04_06695	PF14809	C1 domain of tRNA-guanine transglycosylase dimerisation
A3L04_06695	PF14810	Patch-forming domain C2 of tRNA-guanine transglycosylase
A3L04_06700	PF04930	A3L04_06700
A3L04_06705	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
A3L04_06710	PF04055	Radical SAM superfamily
A3L04_06710	PF13353	4Fe-4S single cluster domain
A3L04_06715	PF02643	Uncharacterized ACR, COG1430
A3L04_06720	PF00270	DEAD/DEAH box helicase
A3L04_06720	PF00271	Helicase conserved C-terminal domain
A3L04_06720	PF08494	A3L04_06720
A3L04_06730	PF13380	CoA binding domain
A3L04_06745	PF01008	Initiation factor 2 subunit family
A3L04_06755	PF07690	Major Facilitator Superfamily
A3L04_06760	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A3L04_06760	PF03129	Anticodon binding domain
A3L04_06760	PF08915	Archaea-specific editing domain of threonyl-tRNA synthetase
A3L04_06765	PF13184	NusA-like KH domain
A3L04_06775	PF01074	Glycosyl hydrolases family 38 N-terminal domain
A3L04_06775	PF07748	Glycosyl hydrolases family 38 C-terminal domain
A3L04_06775	PF09261	Alpha mannosidase, middle domain
A3L04_06780	PF17146	A3L04_06780
A3L04_06785	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A3L04_06785	PF02403	Seryl-tRNA synthetase N-terminal domain
A3L04_06790	PF00004	ATPase family associated with various cellular activities (AAA)
A3L04_06790	PF09336	Vps4 C terminal oligomerisation domain
A3L04_06795	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
A3L04_06795	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_06800	PF09891	Uncharacterized protein conserved in archaea (DUF2118)
A3L04_06820	PF00850	Histone deacetylase domain
A3L04_06825	PF01929	Ribosomal protein L14
A3L04_06830	PF13189	Cytidylate kinase-like family
A3L04_06835	PF01199	Ribosomal protein L34e
A3L04_06845	PF00326	Prolyl oligopeptidase family
A3L04_06845	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
A3L04_06850	PF01022	Bacterial regulatory protein, arsR family
A3L04_06850	PF01637	Archaeal ATPase
A3L04_06850	PF03008	A3L04_06850
A3L04_06855	PF07690	Major Facilitator Superfamily
A3L04_06880	PF05958	tRNA (Uracil-5-)-methyltransferase
A3L04_06885	PF01902	ATP-binding region
A3L04_06890	PF00096	Zinc finger, C2H2 type
A3L04_06895	PF00753	Metallo-beta-lactamase superfamily
A3L04_06900	PF02579	Dinitrogenase iron-molybdenum cofactor
A3L04_06905	PF03773	A3L04_06905
A3L04_06910	PF03773	A3L04_06910
A3L04_06920	PF02579	Dinitrogenase iron-molybdenum cofactor
A3L04_06930	PF08241	Methyltransferase domain
A3L04_06940	PF01458	Uncharacterized protein family (UPF0051)
A3L04_06945	PF00005	ABC transporter
A3L04_06950	PF02579	Dinitrogenase iron-molybdenum cofactor
A3L04_06955	PF03992	Antibiotic biosynthesis monooxygenase
A3L04_06960	PF00753	Metallo-beta-lactamase superfamily
A3L04_06965	PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
A3L04_06965	PF08207	Elongation factor P (EF-P) KOW-like domain
A3L04_06975	PF03587	EMG1/NEP1 methyltransferase
A3L04_06980	PF00149	Calcineurin-like phosphoesterase
A3L04_06995	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
A3L04_07000	PF01189	NOL1/NOP2/sun family
A3L04_07000	PF17125	A3L04_07000
A3L04_07020	PF12679	A3L04_07020
A3L04_07025	PF10633	NPCBM-associated, NEW3 domain of alpha-galactosidase
A3L04_07025	PF13620	Carboxypeptidase regulatory-like domain
A3L04_07030	PF00005	ABC transporter
A3L04_07030	PF13732	A3L04_07030
A3L04_07035	PF12679	A3L04_07035
A3L04_07040	PF01266	FAD dependent oxidoreductase
A3L04_07045	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_07045	PF13510	2Fe-2S iron-sulfur cluster binding domain
A3L04_07050	PF00474	Sodium:solute symporter family
A3L04_07070	PF00384	Molybdopterin oxidoreductase
A3L04_07070	PF01568	Molydopterin dinucleotide binding domain
A3L04_07070	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
A3L04_07075	PF14681	Uracil phosphoribosyltransferase
A3L04_07080	PF00860	Permease family
A3L04_07095	PF01946	Thi4 family
A3L04_07100	PF01680	SOR/SNZ family
A3L04_07100	PF05690	Thiazole biosynthesis protein ThiG
A3L04_07105	PF01174	SNO glutamine amidotransferase family
A3L04_07110	PF13175	AAA ATPase domain
A3L04_07115	PF13173	AAA domain
A3L04_07115	PF13635	A3L04_07115
A3L04_07120	PF00384	Molybdopterin oxidoreductase
A3L04_07120	PF01568	Molydopterin dinucleotide binding domain
A3L04_07120	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
A3L04_07125	PF01637	Archaeal ATPase
A3L04_07130	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_07135	PF00005	ABC transporter
A3L04_07140	PF13416	Bacterial extracellular solute-binding protein
A3L04_07145	PF13635	A3L04_07145
A3L04_07150	PF13173	AAA domain
A3L04_07155	PF06849	Protein of unknown function (DUF1246)
A3L04_07155	PF06973	Domain of unknown function (DUF1297)
A3L04_07160	PF00958	GMP synthase C terminal domain
A3L04_07160	PF02540	NAD synthase
A3L04_07165	PF01954	Protein of unknown function DUF104
A3L04_07170	PF01850	PIN domain
A3L04_07175	PF00117	Glutamine amidotransferase class-I
A3L04_07185	PF09874	A3L04_07185
A3L04_07190	PF10102	A3L04_07190
A3L04_07215	PF04021	A3L04_07215
A3L04_07225	PF00091	Tubulin/FtsZ family, GTPase domain
A3L04_07230	PF00432	Prenyltransferase and squalene oxidase repeat
A3L04_07240	PF00270	DEAD/DEAH box helicase
A3L04_07240	PF00271	Helicase conserved C-terminal domain
A3L04_07240	PF08494	A3L04_07240
A3L04_07245	PF01870	Archaeal holliday junction resolvase (hjc)
A3L04_07255	PF04289	Protein of unknown function (DUF447)
A3L04_07260	PF05239	PRC-barrel domain
A3L04_07265	PF01090	Ribosomal protein S19e
A3L04_07270	PF01985	CRS1 / YhbY (CRM) domain
A3L04_07310	PF00155	Aminotransferase class I and II
A3L04_07315	PF06858	Nucleolar GTP-binding protein 1 (NOG1)
A3L04_07320	PF06195	A3L04_07320
A3L04_07325	PF10050	A3L04_07325
A3L04_07330	PF01597	Glycine cleavage H-protein
A3L04_07335	PF00833	Ribosomal S17
A3L04_07340	PF02811	PHP domain
A3L04_07350	PF03673	A3L04_07350
A3L04_07355	PF02926	THUMP domain
A3L04_07360	PF04475	A3L04_07360
A3L04_07365	PF04010	Protein of unknown function (DUF357)
A3L04_07370	PF02195	ParB-like nuclease domain
A3L04_07385	PF01642	Methylmalonyl-CoA mutase
A3L04_07390	PF03551	Transcriptional regulator PadR-like family
A3L04_07410	PF00266	Aminotransferase class-V
A3L04_07415	PF00437	Type II/IV secretion system protein
A3L04_07420	PF04055	Radical SAM superfamily
A3L04_07425	PF00375	Sodium:dicarboxylate symporter family
A3L04_07430	PF04014	Antidote-toxin recognition MazE
A3L04_07440	PF02637	GatB domain
A3L04_07440	PF02934	GatB/GatE catalytic domain
A3L04_07440	PF02938	GAD domain
A3L04_07445	PF00710	Asparaginase
A3L04_07450	PF06202	Amylo-alpha-1,6-glucosidase
A3L04_07455	PF02952	L-fucose isomerase, C-terminal domain
A3L04_07460	PF00294	pfkB family carbohydrate kinase
A3L04_07465	PF11491	Protein of unknown function (DUF3213)
A3L04_07470	PF04055	Radical SAM superfamily
A3L04_07470	PF13353	4Fe-4S single cluster domain
A3L04_07475	PF01899	A3L04_07475
A3L04_07480	PF04066	A3L04_07480
A3L04_07485	PF03334	A3L04_07485
A3L04_07490	PF13244	A3L04_07490
A3L04_07495	PF04039	A3L04_07495
A3L04_07500	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
A3L04_07505	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_07510	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_07515	PF00146	NADH dehydrogenase
A3L04_07520	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
A3L04_07525	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
A3L04_07530	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
A3L04_07535	PF12838	4Fe-4S dicluster domain
A3L04_07540	PF02441	Flavoprotein
A3L04_07540	PF04127	DNA / pantothenate metabolism flavoprotein
A3L04_07545	PF09685	A3L04_07545
A3L04_07550	PF05362	Lon protease (S16) C-terminal proteolytic domain
A3L04_07555	PF01507	Phosphoadenosine phosphosulfate reductase family
A3L04_07560	PF13187	4Fe-4S dicluster domain
A3L04_07565	PF00146	NADH dehydrogenase
A3L04_07570	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
A3L04_07570	PF00374	Nickel-dependent hydrogenase
A3L04_07575	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
A3L04_07580	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
A3L04_07590	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_07590	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
A3L04_07595	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
A3L04_07600	PF04039	A3L04_07600
A3L04_07610	PF13244	A3L04_07610
A3L04_07615	PF03334	A3L04_07615
A3L04_07620	PF04066	A3L04_07620
A3L04_07625	PF01899	A3L04_07625
A3L04_07630	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_07635	PF00202	Aminotransferase class-III
A3L04_07640	PF08282	haloacid dehalogenase-like hydrolase
A3L04_07645	PF00432	Prenyltransferase and squalene oxidase repeat
A3L04_07660	PF02475	Met-10+ like-protein
A3L04_07665	PF00752	XPG N-terminal domain
A3L04_07665	PF00867	XPG I-region
A3L04_07670	PF06146	A3L04_07670
A3L04_07675	PF00005	ABC transporter
A3L04_07675	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_07680	PF00005	ABC transporter
A3L04_07680	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_07685	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_07685	PF12911	A3L04_07685
A3L04_07690	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_07695	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A3L04_07700	PF00696	Amino acid kinase family
A3L04_07705	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_07710	PF07521	RNA-metabolising metallo-beta-lactamase
A3L04_07710	PF10996	Beta-Casp domain
A3L04_07710	PF16661	A3L04_07710
A3L04_07710	PF17214	A3L04_07710
A3L04_07715	PF00227	Proteasome subunit
A3L04_07720	PF04013	Putative SAM-dependent RNA methyltransferase
A3L04_07730	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A3L04_07740	PF05123	A3L04_07740
A3L04_07740	PF05124	A3L04_07740
A3L04_07750	PF04055	Radical SAM superfamily
A3L04_07750	PF13353	4Fe-4S single cluster domain
A3L04_07755	PF02558	Ketopantoate reductase PanE/ApbA
A3L04_07755	PF08546	Ketopantoate reductase PanE/ApbA C terminal
A3L04_07760	PF01865	Protein of unknown function DUF47
A3L04_07765	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
A3L04_07765	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
A3L04_07770	PF03065	Glycosyl hydrolase family 57
A3L04_07770	PF09210	Domain of unknown function (DUF1957)
A3L04_07770	PF14520	Helix-hairpin-helix domain
A3L04_07775	PF05670	A3L04_07775
A3L04_07775	PF05833	Fibronectin-binding protein A N-terminus (FbpA)
A3L04_07790	PF04055	Radical SAM superfamily
A3L04_07795	PF02566	OsmC-like protein
A3L04_07800	PF06094	AIG2-like family
A3L04_07805	PF02006	Protein of unknown function DUF137
A3L04_07810	PF01381	Helix-turn-helix
A3L04_07815	PF03167	Uracil DNA glycosylase superfamily
A3L04_07825	PF01261	Xylose isomerase-like TIM barrel
A3L04_07835	PF13685	Iron-containing alcohol dehydrogenase
A3L04_07840	PF03684	A3L04_07840
A3L04_07845	PF00750	tRNA synthetases class I (R)
A3L04_07845	PF03485	Arginyl tRNA synthetase N terminal domain
A3L04_07845	PF05746	DALR anticodon binding domain
A3L04_07850	PF03463	eRF1 domain 1
A3L04_07850	PF03464	eRF1 domain 2
A3L04_07850	PF03465	eRF1 domain 3
A3L04_07855	PF01900	Rpp14/Pop5 family
A3L04_07860	PF00382	Transcription factor TFIIB repeat
A3L04_07860	PF08271	TFIIB zinc-binding
A3L04_07870	PF00338	Ribosomal protein S10p/S20e
A3L04_07875	PF00009	Elongation factor Tu GTP binding domain
A3L04_07875	PF03143	Elongation factor Tu C-terminal domain
A3L04_07875	PF03144	Elongation factor Tu domain 2
A3L04_07880	PF03099	Biotin/lipoate A/B protein ligase family
A3L04_07885	PF01545	Cation efflux family
A3L04_07885	PF16916	A3L04_07885
A3L04_07905	PF00892	EamA-like transporter family
A3L04_07910	PF01246	Ribosomal protein L24e
A3L04_07915	PF01200	Ribosomal protein S28e
A3L04_07920	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
A3L04_07925	PF01694	Rhomboid family
A3L04_07935	PF00633	Helix-hairpin-helix motif
A3L04_07935	PF00730	HhH-GPD superfamily base excision DNA repair protein
A3L04_07940	PF02933	Cell division protein 48 (CDC48), domain 2
A3L04_07945	PF01037	AsnC family
A3L04_07945	PF13412	Winged helix-turn-helix DNA-binding
A3L04_07950	PF00202	Aminotransferase class-III
A3L04_07955	PF00704	Glycosyl hydrolases family 18
A3L04_07960	PF00553	Cellulose binding domain
A3L04_07960	PF01670	Glycosyl hydrolase family 12
A3L04_07965	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A3L04_07965	PF14697	4Fe-4S dicluster domain
A3L04_07970	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A3L04_07970	PF14697	4Fe-4S dicluster domain
A3L04_07975	PF04055	Radical SAM superfamily
A3L04_07980	PF04016	Domain of unknown function (DUF364)
A3L04_07980	PF13938	Domain of unknown function (DUF4213)
A3L04_07985	PF14358	A3L04_07985
A3L04_08000	PF00440	Bacterial regulatory proteins, tetR family
A3L04_08005	PF00384	Molybdopterin oxidoreductase
A3L04_08005	PF01568	Molydopterin dinucleotide binding domain
A3L04_08005	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
A3L04_08010	PF12800	4Fe-4S binding domain
A3L04_08010	PF13247	4Fe-4S dicluster domain
A3L04_08015	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_08015	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
A3L04_08020	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_08025	PF00146	NADH dehydrogenase
A3L04_08030	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
A3L04_08030	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
A3L04_08030	PF00374	Nickel-dependent hydrogenase
A3L04_08035	PF12838	4Fe-4S dicluster domain
A3L04_08040	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
A3L04_08050	PF04066	A3L04_08050
A3L04_08055	PF03334	A3L04_08055
A3L04_08060	PF13244	A3L04_08060
A3L04_08065	PF04039	A3L04_08065
A3L04_08070	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
A3L04_08075	PF01899	A3L04_08075
A3L04_08080	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A3L04_08090	PF12804	MobA-like NTP transferase domain
A3L04_08095	PF01750	Hydrogenase maturation protease
A3L04_08100	PF03063	Prismane/CO dehydrogenase family
A3L04_08110	PF02915	Rubrerythrin
A3L04_08115	PF01883	Domain of unknown function DUF59
A3L04_08125	PF02915	Rubrerythrin
A3L04_08130	PF04027	Domain of unknown function (DUF371)
A3L04_08135	PF01637	Archaeal ATPase
A3L04_08135	PF03008	A3L04_08135
A3L04_08140	PF13360	PQQ-like domain
A3L04_08145	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
A3L04_08150	PF02926	THUMP domain
A3L04_08155	PF00575	S1 RNA binding domain
A3L04_08155	PF07541	Eukaryotic translation initiation factor 2 alpha subunit
A3L04_08160	PF04135	Nucleolar RNA-binding protein, Nop10p family
A3L04_08165	PF09754	PAC2 family
A3L04_08170	PF13173	AAA domain
A3L04_08170	PF13635	A3L04_08170
A3L04_08180	PF04266	ASCH domain
A3L04_08185	PF00753	Metallo-beta-lactamase superfamily
A3L04_08190	PF03069	Acetamidase/Formamidase family
A3L04_08195	PF02548	Ketopantoate hydroxymethyltransferase
A3L04_08205	PF01637	Archaeal ATPase
A3L04_08205	PF03008	A3L04_08205
A3L04_08205	PF09339	IclR helix-turn-helix domain
A3L04_08215	PF02452	PemK-like protein
A3L04_08220	PF01402	Ribbon-helix-helix protein, copG family
A3L04_08235	PF01637	Archaeal ATPase
A3L04_08240	PF01523	Putative modulator of DNA gyrase
A3L04_08245	PF01523	Putative modulator of DNA gyrase
A3L04_08255	PF07690	Major Facilitator Superfamily
A3L04_08270	PF01022	Bacterial regulatory protein, arsR family
A3L04_08275	PF00733	Asparagine synthase
A3L04_08275	PF13537	Glutamine amidotransferase domain
A3L04_08280	PF14464	Prokaryotic homologs of the JAB domain
A3L04_08285	PF01201	Ribosomal protein S8e
A3L04_08290	PF00005	ABC transporter
A3L04_08290	PF00664	ABC transporter transmembrane region
A3L04_08295	PF00005	ABC transporter
A3L04_08295	PF00664	ABC transporter transmembrane region
A3L04_08305	PF13173	AAA domain
A3L04_08310	PF00266	Aminotransferase class-V
A3L04_08315	PF01784	NIF3 (NGG1p interacting factor 3)
A3L04_08325	PF01866	Putative diphthamide synthesis protein
A3L04_08330	PF01938	TRAM domain
A3L04_08335	PF02597	ThiS family
A3L04_08340	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A3L04_08345	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_08350	PF00528	Binding-protein-dependent transport system inner membrane component
A3L04_08350	PF12911	A3L04_08350
A3L04_08355	PF00005	ABC transporter
A3L04_08355	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_08360	PF00005	ABC transporter
A3L04_08360	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A3L04_08365	PF04041	Domain of unknown function (DUF377)
A3L04_08370	PF03367	ZPR1 zinc-finger domain
A3L04_08375	PF13649	Methyltransferase domain
A3L04_08380	PF01066	CDP-alcohol phosphatidyltransferase
A3L04_08380	PF12804	MobA-like NTP transferase domain
A3L04_08385	PF01850	PIN domain
A3L04_08390	PF00162	Phosphoglycerate kinase
A3L04_08400	PF01118	Semialdehyde dehydrogenase, NAD binding domain
A3L04_08400	PF02774	Semialdehyde dehydrogenase, dimerisation domain
A3L04_08405	PF00291	Pyridoxal-phosphate dependent enzyme
A3L04_08410	PF00288	GHMP kinases N terminal domain
A3L04_08410	PF08544	GHMP kinases C terminal
A3L04_08415	PF00696	Amino acid kinase family
A3L04_08420	PF00696	Amino acid kinase family
A3L04_08425	PF00557	Metallopeptidase family M24
A3L04_08425	PF01321	Creatinase/Prolidase N-terminal domain
A3L04_08430	PF01814	Hemerythrin HHE cation binding domain
A3L04_08430	PF04282	A3L04_08430
A3L04_08430	PF13596	PAS domain
A3L04_08435	PF01842	ACT domain
A3L04_08480	PF10117	A3L04_08480
A3L04_08485	PF07728	AAA domain (dynein-related subfamily)
A3L04_08490	PF00176	SNF2 family N-terminal domain
A3L04_08490	PF00271	Helicase conserved C-terminal domain
A3L04_08490	PF13020	A3L04_08490
A3L04_08500	PF04465	A3L04_08500
A3L04_08525	PF06634	A3L04_08525
A3L04_08540	PF09376	NurA domain
A3L04_08545	PF01935	Domain of unknown function DUF87
A3L04_08545	PF09378	HAS barrel domain
A3L04_08550	PF12850	Calcineurin-like phosphoesterase superfamily domain
A3L04_08555	PF04423	Rad50 zinc hook motif
A3L04_08555	PF13476	AAA domain
A3L04_08560	PF02463	RecF/RecN/SMC N terminal domain
A3L04_08575	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A3L04_08575	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
A3L04_08580	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
A3L04_08585	PF17179	A3L04_08585
A3L04_08590	PF00175	Oxidoreductase NAD-binding domain
A3L04_08590	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
A3L04_08595	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
A3L04_08600	PF00374	Nickel-dependent hydrogenase
A3L04_08605	PF01637	Archaeal ATPase
A3L04_08620	PF01455	HupF/HypC family
A3L04_08625	PF01924	Hydrogenase formation hypA family
A3L04_08630	PF04055	Radical SAM superfamily
A3L04_08630	PF13186	Iron-sulfur cluster-binding domain
A3L04_08630	PF13353	4Fe-4S single cluster domain
A3L04_08635	PF00708	Acylphosphatase
A3L04_08635	PF00814	Glycoprotease family
A3L04_08635	PF01300	Telomere recombination
A3L04_08635	PF07503	HypF finger
A3L04_08650	PF13086	AAA domain
A3L04_08650	PF13087	AAA domain
A3L04_08660	PF01637	Archaeal ATPase
A3L04_08675	PF01551	Peptidase family M23
A3L04_08680	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A3L04_08680	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A3L04_08680	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A3L04_08680	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A3L04_08685	PF00483	Nucleotidyl transferase
A3L04_08685	PF01050	Mannose-6-phosphate isomerase
A3L04_08690	PF08282	haloacid dehalogenase-like hydrolase
A3L04_08695	PF09488	Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth)
A3L04_08700	PF05124	A3L04_08700
A3L04_08705	PF02597	ThiS family
A3L04_08710	PF04055	Radical SAM superfamily
A3L04_08710	PF13186	Iron-sulfur cluster-binding domain
A3L04_08710	PF13353	4Fe-4S single cluster domain
A3L04_08720	PF02457	DisA bacterial checkpoint controller nucleotide-binding
A3L04_08725	PF02441	Flavoprotein
A3L04_08730	PF13412	Winged helix-turn-helix DNA-binding
A3L04_08735	PF01928	CYTH domain
A3L04_08740	PF00579	tRNA synthetases class I (W and Y)
A3L04_08750	PF00892	EamA-like transporter family
A3L04_08755	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A3L04_08755	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A3L04_08755	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A3L04_08755	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A3L04_08760	PF03437	BtpA family
A3L04_08765	PF01026	TatD related DNase
A3L04_08770	PF04023	FeoA domain
A3L04_08775	PF02421	Ferrous iron transport protein B
A3L04_08775	PF07664	A3L04_08775
A3L04_08775	PF07670	Nucleoside recognition
A3L04_08780	PF09012	FeoC like transcriptional regulator
A3L04_08790	PF01070	FMN-dependent dehydrogenase
A3L04_08805	PF04459	A3L04_08805
A3L04_08810	PF04055	Radical SAM superfamily
A3L04_08810	PF13394	4Fe-4S single cluster domain
A3L04_08815	PF01325	Iron dependent repressor, N-terminal DNA binding domain
A3L04_08815	PF02742	Iron dependent repressor, metal binding and dimerisation domain
A3L04_08820	PF00860	Permease family
A3L04_08825	PF01048	Phosphorylase superfamily
A3L04_08835	PF13231	A3L04_08835
A3L04_08840	PF07969	Amidohydrolase family
A3L04_08845	PF00037	4Fe-4S binding domain
A3L04_08845	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
A3L04_08845	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_08850	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
A3L04_08850	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_08860	PF00132	Bacterial transferase hexapeptide (six repeats)
A3L04_08860	PF00483	Nucleotidyl transferase
A3L04_08865	PF00152	tRNA synthetases class II (D, K and N)
A3L04_08865	PF01336	OB-fold nucleic acid binding domain
A3L04_08870	PF05763	A3L04_08870
A3L04_08885	PF06745	KaiC
A3L04_08890	PF01244	Membrane dipeptidase (Peptidase family M19)
A3L04_08895	PF13649	Methyltransferase domain
A3L04_08900	PF05763	A3L04_08900
A3L04_08905	PF00827	Ribosomal L15
A3L04_08910	PF01850	PIN domain
A3L04_08915	PF04014	Antidote-toxin recognition MazE
A3L04_08925	PF00005	ABC transporter
A3L04_08935	PF00133	tRNA synthetases class I (I, L, M and V)
A3L04_08935	PF08264	Anticodon-binding domain of tRNA
A3L04_08950	PF17179	A3L04_08950
A3L04_08955	PF00175	Oxidoreductase NAD-binding domain
A3L04_08955	PF00970	Oxidoreductase FAD-binding domain
A3L04_08955	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
A3L04_08960	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
A3L04_08965	PF00374	Nickel-dependent hydrogenase
A3L04_08970	PF08967	Domain of unknown function (DUF1884)
A3L04_08985	PF01717	Cobalamin-independent synthase, Catalytic domain
A3L04_08990	PF01717	Cobalamin-independent synthase, Catalytic domain
A3L04_08995	PF02219	Methylenetetrahydrofolate reductase
A3L04_08995	PF12225	A3L04_08995
A3L04_09000	PF01053	Cys/Met metabolism PLP-dependent enzyme
A3L04_09005	PF01029	NusB family
A3L04_09005	PF01189	NOL1/NOP2/sun family
A3L04_09015	PF09827	CRISPR associated protein Cas2
A3L04_09020	PF01867	CRISPR associated protein Cas1
A3L04_09025	PF01930	Domain of unknown function DUF83
A3L04_09030	PF00270	DEAD/DEAH box helicase
A3L04_09030	PF00271	Helicase conserved C-terminal domain
A3L04_09040	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
A3L04_09050	PF03787	RAMP superfamily
A3L04_09055	PF09701	CRISPR-associated protein (Cas_Cmr5)
A3L04_09060	PF03787	RAMP superfamily
A3L04_09065	PF09455	CRISPR-associated (Cas) DxTHG family
A3L04_09070	PF09700	CRISPR-associated protein (Cas_Cmr3)
A3L04_09075	PF12469	CRISPR-associated protein
A3L04_09080	PF03787	RAMP superfamily
A3L04_09085	PF01881	CRISPR associated protein Cas6
A3L04_09090	PF02543	Carbamoyltransferase
A3L04_09090	PF16861	A3L04_09090
A3L04_09100	PF13238	AAA domain
A3L04_09105	PF04471	Restriction endonuclease
A3L04_09110	PF01435	Peptidase family M48
A3L04_09115	PF02537	A3L04_09115
A3L04_09120	PF02641	Uncharacterized ACR, COG1993
A3L04_09145	PF00009	Elongation factor Tu GTP binding domain
A3L04_09145	PF03144	Elongation factor Tu domain 2
A3L04_09145	PF11987	Translation-initiation factor 2
A3L04_09145	PF14578	Elongation factor Tu domain 4
A3L04_09150	PF04055	Radical SAM superfamily
A3L04_09155	PF11755	A3L04_09155
A3L04_09160	PF00474	Sodium:solute symporter family
A3L04_09165	PF01546	Peptidase family M20/M25/M40
A3L04_09165	PF07687	Peptidase dimerisation domain
A3L04_09170	PF13412	Winged helix-turn-helix DNA-binding
A3L04_09180	PF13380	CoA binding domain
A3L04_09180	PF13607	Succinyl-CoA ligase like flavodoxin domain
A3L04_09185	PF01467	Cytidylyltransferase
A3L04_09190	PF07690	Major Facilitator Superfamily
A3L04_09195	PF04055	Radical SAM superfamily
A3L04_09195	PF13186	Iron-sulfur cluster-binding domain
A3L04_09195	PF13353	4Fe-4S single cluster domain
A3L04_09200	PF13450	NAD(P)-binding Rossmann-like domain
A3L04_09205	PF03479	Domain of unknown function (DUF296)
A3L04_09210	PF02001	A3L04_09210
A3L04_09230	PF04140	Isoprenylcysteine carboxyl methyltransferase (ICMT) family
A3L04_09235	PF00144	Beta-lactamase
A3L04_09235	PF13969	Pab87 octamerisation domain
A3L04_09240	PF04055	Radical SAM superfamily
A3L04_09240	PF13353	4Fe-4S single cluster domain
A3L04_09250	PF01189	NOL1/NOP2/sun family
A3L04_09250	PF17125	A3L04_09250
A3L04_09255	PF00206	Lyase
A3L04_09255	PF10397	Adenylosuccinate lyase C-terminus
A3L04_09260	PF01522	Polysaccharide deacetylase
A3L04_09265	PF00534	Glycosyl transferases group 1
A3L04_09265	PF13439	Glycosyltransferase Family 4
A3L04_09270	PF03706	A3L04_09270
A3L04_09280	PF01637	Archaeal ATPase
A3L04_09290	PF04199	Putative cyclase
A3L04_09295	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A3L04_09295	PF05221	S-adenosyl-L-homocysteine hydrolase
A3L04_09300	PF01042	Endoribonuclease L-PSP
A3L04_09305	PF00005	ABC transporter
A3L04_09305	PF00037	4Fe-4S binding domain
A3L04_09305	PF04068	Possible Fer4-like domain in RNase L inhibitor, RLI
A3L04_09310	PF01039	Carboxyl transferase domain
A3L04_09315	PF04277	A3L04_09315
A3L04_09320	PF00364	Biotin-requiring enzyme
A3L04_09325	PF03977	A3L04_09325
A3L04_09330	PF00390	Malic enzyme, N-terminal domain
A3L04_09330	PF03949	Malic enzyme, NAD binding domain
A3L04_09340	PF00696	Amino acid kinase family
A3L04_09355	PF00270	DEAD/DEAH box helicase
A3L04_09355	PF00271	Helicase conserved C-terminal domain
A3L04_09355	PF14520	Helix-hairpin-helix domain
A3L04_09375	PF04252	A3L04_09375
A3L04_09390	PF01863	Protein of unknown function DUF45
A3L04_09395	PF01894	Uncharacterised protein family UPF0047
A3L04_09400	PF01613	Flavin reductase like domain
A3L04_09405	PF10120	Putative aldolase
A3L04_09415	PF01637	Archaeal ATPase
A3L04_09420	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
A3L04_09420	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
A3L04_09425	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
A3L04_09425	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
A3L04_09430	PF01546	Peptidase family M20/M25/M40
A3L04_09430	PF07687	Peptidase dimerisation domain
A3L04_09440	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
A3L04_09450	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
A3L04_09450	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
A3L04_09455	PF01909	Nucleotidyltransferase domain
A3L04_09460	PF01861	Protein of unknown function DUF43
A3L04_09465	PF14544	Domain of unknown function (DUF4443)
A3L04_09470	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L04_09475	PF01472	PUA domain
A3L04_09475	PF09183	Domain of unknown function (DUF1947)
A3L04_09480	PF01467	Cytidylyltransferase
A3L04_09485	PF00583	Acetyltransferase (GNAT) family
A3L04_09490	PF00881	Nitroreductase family
A3L04_09495	PF05343	M42 glutamyl aminopeptidase
A3L04_09500	PF03595	Voltage-dependent anion channel
A3L04_09505	PF03008	A3L04_09505
A3L04_09515	PF01637	Archaeal ATPase
A3L04_09520	PF00133	tRNA synthetases class I (I, L, M and V)
A3L04_09520	PF08264	Anticodon-binding domain of tRNA
A3L04_09530	PF07760	A3L04_09530
A3L04_09535	PF00586	AIR synthase related protein, N-terminal domain
A3L04_09535	PF02769	AIR synthase related protein, C-terminal domain
A3L04_09540	PF01637	Archaeal ATPase
A3L04_09540	PF03008	A3L04_09540
A3L04_09545	PF01850	PIN domain
A3L04_09555	PF02222	ATP-grasp domain
A3L04_09560	PF00731	AIR carboxylase
A3L04_09565	PF02222	ATP-grasp domain
A3L04_09580	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
A3L04_09580	PF02843	Phosphoribosylglycinamide synthetase, C domain
A3L04_09580	PF02844	Phosphoribosylglycinamide synthetase, N domain
A3L04_09585	PF06849	Protein of unknown function (DUF1246)
A3L04_09585	PF06973	Domain of unknown function (DUF1297)
A3L04_09590	PF01988	A3L04_09590
A3L04_09590	PF02915	Rubrerythrin
A3L04_09595	PF01841	Transglutaminase-like superfamily
A3L04_09605	PF07726	ATPase family associated with various cellular activities (AAA)
A3L04_09610	PF01882	A3L04_09610
A3L04_09620	PF13360	PQQ-like domain
A3L04_09630	PF04254	A3L04_09630
A3L04_09635	PF00924	Mechanosensitive ion channel
A3L04_09640	PF00483	Nucleotidyl transferase
A3L04_09645	PF12389	A3L04_09645
A3L04_09650	PF01170	Putative RNA methylase family UPF0020
A3L04_09650	PF02926	THUMP domain
A3L04_09660	PF04055	Radical SAM superfamily
A3L04_09665	PF00005	ABC transporter
A3L04_09675	PF00575	S1 RNA binding domain
A3L04_09675	PF01336	OB-fold nucleic acid binding domain
A3L04_09680	PF01864	A3L04_09680
A3L04_09685	PF01926	50S ribosome-binding GTPase
A3L04_09695	PF13023	HD domain
A3L04_09700	PF00953	Glycosyl transferase family 4
A3L04_09705	PF01881	CRISPR associated protein Cas6
A3L04_09710	PF02163	Peptidase family M50
A3L04_09715	PF01989	Protein of unknown function DUF126
A3L04_09720	PF04412	A3L04_09720
A3L04_09725	PF13231	A3L04_09725
A3L04_09730	PF01873	Domain found in IF2B/IF5
A3L04_09735	PF00493	MCM2/3/5 family
A3L04_09735	PF14528	LAGLIDADG-like domain
A3L04_09735	PF14551	MCM N-terminal domain
A3L04_09735	PF14890	Intein splicing domain
A3L04_09735	PF17207	A3L04_09735
A3L04_09740	PF05916	GINS complex protein
A3L04_09745	PF03029	Conserved hypothetical ATP binding protein
A3L04_09750	PF13614	AAA domain
A3L04_09755	PF00892	EamA-like transporter family
A3L04_09760	PF04122	A3L04_09760
A3L04_09760	PF13412	Winged helix-turn-helix DNA-binding
A3L04_09765	PF01092	Ribosomal protein S6e
A3L04_09775	PF09883	A3L04_09775
A3L04_09780	PF02002	TFIIE alpha subunit
A3L04_09795	PF04312	A3L04_09795
A3L04_09800	PF01131	DNA topoisomerase
A3L04_09800	PF01396	A3L04_09800
A3L04_09800	PF01751	Toprim domain
A3L04_09805	PF13649	Methyltransferase domain
A3L04_09810	PF05168	HEPN domain
A3L04_09815	PF00270	DEAD/DEAH box helicase
A3L04_09815	PF01131	DNA topoisomerase
A3L04_09815	PF01751	Toprim domain
A3L04_09820	PF01978	Sugar-specific transcriptional regulator TrmB
A3L04_09820	PF11495	Archaeal transcriptional regulator TrmB
A3L04_09830	PF06677	A3L04_09830
A3L04_09835	PF00491	Arginase family
A3L04_09840	PF02475	Met-10+ like-protein
A3L04_09845	PF03266	NTPase
A3L04_09850	PF00005	ABC transporter
A3L04_09855	PF01032	FecCD transport family
A3L04_09860	PF05127	Helicase
A3L04_09860	PF08351	Domain of unknown function (DUF1726)
A3L04_09860	PF13718	GNAT acetyltransferase 2
A3L04_09865	PF08279	HTH domain
A3L04_09870	PF04021	A3L04_09870
A3L04_09875	PF04021	A3L04_09875
A3L04_09880	PF13231	A3L04_09880
A3L04_09890	PF03819	MazG nucleotide pyrophosphohydrolase domain
A3L04_09895	PF00730	HhH-GPD superfamily base excision DNA repair protein
A3L04_09900	PF01381	Helix-turn-helix
A3L04_09905	PF00202	Aminotransferase class-III
A3L04_09910	PF01235	A3L04_09910
A3L04_09915	PF13559	A3L04_09915
A3L04_09925	PF07726	ATPase family associated with various cellular activities (AAA)
A3L04_09930	PF01882	A3L04_09930
A3L04_09940	PF07690	Major Facilitator Superfamily
A3L04_09945	PF01169	A3L04_09945
A3L04_09950	PF00155	Aminotransferase class I and II
A3L04_09955	PF08617	Kinase binding protein CGI-121
A3L04_09960	PF01402	Ribbon-helix-helix protein, copG family
A3L04_09965	PF00091	Tubulin/FtsZ family, GTPase domain
A3L04_09965	PF12327	FtsZ family, C-terminal domain
A3L04_09970	PF13614	AAA domain
A3L04_09980	PF13192	Thioredoxin domain
A3L04_09985	PF00005	ABC transporter
A3L04_09990	PF02361	Cobalt transport protein
A3L04_10000	PF01891	Cobalt uptake substrate-specific transmembrane region
A3L04_10005	PF13380	CoA binding domain
A3L04_10005	PF13607	Succinyl-CoA ligase like flavodoxin domain
A3L04_10010	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
A3L04_10010	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A3L04_10010	PF12838	4Fe-4S dicluster domain
A3L04_10015	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
A3L04_10025	PF00999	Sodium/hydrogen exchanger family
A3L04_10030	PF04545	Sigma-70, region 4
A3L04_10030	PF14601	DNA_binding protein, TFX, C-term
A3L04_10055	PF01914	A3L04_10055
A3L04_10060	PF01950	Fructose-1,6-bisphosphatase
A3L04_10065	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
A3L04_10070	PF05559	A3L04_10070
A3L04_10080	PF11469	Ribonuclease III
A3L04_10085	PF00465	Iron-containing alcohol dehydrogenase
A3L04_10090	PF15517	TBP-interacting protein N-terminus
A3L04_10095	PF07690	Major Facilitator Superfamily
A3L04_10100	PF03551	Transcriptional regulator PadR-like family
A3L04_10105	PF00586	AIR synthase related protein, N-terminal domain
A3L04_10105	PF02769	AIR synthase related protein, C-terminal domain
A3L04_10110	PF01927	A3L04_10110
A3L04_10115	PF01916	Deoxyhypusine synthase
A3L04_10120	PF03683	A3L04_10120
A3L04_10130	PF13649	Methyltransferase domain
A3L04_10140	PF01850	PIN domain
A3L04_10145	PF00155	Aminotransferase class I and II
A3L04_10150	PF01637	Archaeal ATPase
A3L04_10160	PF03186	A3L04_10160
A3L04_10165	PF04608	Phosphatidylglycerophosphatase A
A3L04_10170	PF03683	A3L04_10170
A3L04_10175	PF11848	A3L04_10175
A3L04_10180	PF02654	A3L04_10180
A3L04_10190	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A3L04_10190	PF07685	CobB/CobQ-like glutamine amidotransferase domain
A3L04_10195	PF02277	Phosphoribosyltransferase
A3L04_10200	PF01955	A3L04_10200
A3L04_10205	PF01850	PIN domain
A3L04_10210	PF02697	A3L04_10210
A3L04_10215	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
A3L04_10235	PF16147	A3L04_10235
A3L04_10250	PF01467	Cytidylyltransferase
A3L04_10255	PF01887	S-adenosyl-l-methionine hydroxide adenosyltransferase
A3L04_10265	PF01994	tRNA ribose 2'-O-methyltransferase, aTrm56
A3L04_10270	PF01066	CDP-alcohol phosphatidyltransferase
A3L04_10275	PF13419	Haloacid dehalogenase-like hydrolase
A3L04_10280	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
A3L04_10280	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_10285	PF00535	Glycosyl transferase family 2
A3L04_10290	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP)
A3L04_10295	PF05362	Lon protease (S16) C-terminal proteolytic domain
A3L04_10295	PF13654	AAA domain
A3L04_10295	PF14528	LAGLIDADG-like domain
A3L04_10305	PF05626	A3L04_10305
A3L04_10310	PF04266	ASCH domain
A3L04_10315	PF04266	ASCH domain
A3L04_10320	PF06819	A3L04_10320
A3L04_10325	PF01163	RIO1 family
A3L04_10330	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A3L04_10335	PF00488	MutS domain V
A3L04_10340	PF01008	Initiation factor 2 subunit family
A3L04_10345	PF00994	Probable molybdopterin binding domain
A3L04_10350	PF12146	Putative lysophospholipase
A3L04_10365	PF01637	Archaeal ATPase
A3L04_10370	PF00709	Adenylosuccinate synthetase
A3L04_10380	PF01300	Telomere recombination
A3L04_10380	PF03481	Putative GTP-binding controlling metal-binding
A3L04_10385	PF00534	Glycosyl transferases group 1
A3L04_10385	PF13439	Glycosyltransferase Family 4
A3L04_10390	PF01980	Uncharacterised protein family UPF0066
A3L04_10400	PF00120	Glutamine synthetase, catalytic domain
A3L04_10400	PF03951	Glutamine synthetase, beta-Grasp domain
A3L04_10410	PF01886	A3L04_10410
A3L04_10420	PF01494	FAD binding domain
A3L04_10430	PF04587	ADP-specific Phosphofructokinase/Glucokinase conserved region
A3L04_10435	PF00717	Peptidase S24-like
A3L04_10440	PF04407	A3L04_10440
A3L04_10450	PF00892	EamA-like transporter family
A3L04_10455	PF00326	Prolyl oligopeptidase family
A3L04_10455	PF07676	WD40-like Beta Propeller Repeat
A3L04_10460	PF13470	A3L04_10460
A3L04_10470	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
A3L04_10470	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
A3L04_10480	PF00571	CBS domain
A3L04_10485	PF01402	Ribbon-helix-helix protein, copG family
A3L04_10485	PF08753	NikR C terminal nickel binding domain
A3L04_10505	PF06510	A3L04_10505
A3L04_10510	PF06510	A3L04_10510
A3L04_10515	PF00717	Peptidase S24-like
A3L04_10535	PF00482	Type II secretion system (T2SS), protein F
A3L04_10540	PF00437	Type II/IV secretion system protein
A3L04_10545	PF06745	KaiC
A3L04_10550	PF01917	A3L04_10550
A3L04_10560	PF04659	A3L04_10560
A3L04_10565	PF05377	A3L04_10565
A3L04_10570	PF01917	A3L04_10570
A3L04_10575	PF01917	A3L04_10575
A3L04_10580	PF01917	A3L04_10580
A3L04_10585	PF13847	Methyltransferase domain
A3L04_10590	PF07381	A3L04_10590
A3L04_10600	PF02985	HEAT repeat
A3L04_10610	PF13173	AAA domain
A3L04_10610	PF13635	A3L04_10610
A3L04_10630	PF01850	PIN domain
A3L04_10635	PF04014	Antidote-toxin recognition MazE
A3L04_10645	PF07883	Cupin domain
A3L04_10660	PF01588	Putative tRNA binding domain
A3L04_10670	PF02597	ThiS family
A3L04_10680	PF05168	HEPN domain
A3L04_10685	PF01909	Nucleotidyltransferase domain
A3L04_10690	PF01368	DHH family
A3L04_10690	PF02272	DHHA1 domain
A3L04_10695	PF11419	Protein of unknown function (DUF3194)
A3L04_10700	PF01920	Prefoldin subunit
A3L04_10710	PF02195	ParB-like nuclease domain
A3L04_10715	PF13242	HAD-hyrolase-like
A3L04_10715	PF13344	Haloacid dehalogenase-like hydrolase
A3L04_10720	PF00832	Ribosomal L39 protein
A3L04_10725	PF01198	Ribosomal protein L31e
A3L04_10730	PF01912	eIF-6 family
A3L04_10735	PF01775	Ribosomal L18ae/LX protein domain
A3L04_10740	PF02996	Prefoldin subunit
A3L04_10745	PF03008	A3L04_10745
A3L04_10745	PF13173	AAA domain
A3L04_10750	PF01926	50S ribosome-binding GTPase
A3L04_10750	PF02824	TGS domain
A3L04_10750	PF08438	GTPase of unknown function C-terminal
A3L04_10755	PF01297	Periplasmic solute binding protein family
A3L04_10765	PF07282	A3L04_10765
A3L04_10770	PF09339	IclR helix-turn-helix domain
A3L04_10780	PF00994	Probable molybdopterin binding domain
A3L04_10785	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
A3L04_10785	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
A3L04_10790	PF05343	M42 glutamyl aminopeptidase
A3L04_10795	PF01925	A3L04_10795
A3L04_10805	PF13238	AAA domain
A3L04_10810	PF05763	A3L04_10810
A3L04_10815	PF01163	RIO1 family
A3L04_10815	PF09202	Rio2, N-terminal
A3L04_10820	PF02449	Beta-galactosidase
A3L04_10820	PF08532	Beta-galactosidase trimerisation domain
A3L04_10825	PF01380	SIS domain