A3L04_00045	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_00070	SM00382	ATPases associated with a variety of cellular activities
A3L04_00110	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_00125	SM00028	Tetratricopeptide repeats
A3L04_00170	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_00230	SM00382	ATPases associated with a variety of cellular activities
A3L04_00235	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L04_00235	SM00487	DEAD-like helicases superfamily
A3L04_00235	SM00490	helicase superfamily c-terminal domain
A3L04_00235	SM00891	ERCC4 domain
A3L04_00250	SM00838	Elongation factor G C-terminus
A3L04_00250	SM00889	Elongation factor G, domain IV
A3L04_00260	SM00879	A3L04_00260
A3L04_00265	SM00659	RNA polymerase subunit CX
A3L04_00340	SM00382	ATPases associated with a variety of cellular activities
A3L04_00350	SM00014	Acid phosphatase homologues
A3L04_00400	SM00649	Ribosomal protein L11/L12
A3L04_00405	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A3L04_00405	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L04_00415	SM00864	Tubulin/FtsZ family, GTPase domain
A3L04_00415	SM00865	Tubulin/FtsZ family, C-terminal domain
A3L04_00465	SM00382	ATPases associated with a variety of cellular activities
A3L04_00500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3L04_00535	SM00382	ATPases associated with a variety of cellular activities
A3L04_00555	SM00028	Tetratricopeptide repeats
A3L04_00560	SM00888	EF-1 guanine nucleotide exchange domain
A3L04_00590	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_00650	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_00680	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L04_00685	SM00487	DEAD-like helicases superfamily
A3L04_00685	SM00490	helicase superfamily c-terminal domain
A3L04_00690	SM00344	helix_turn_helix ASNC type
A3L04_00715	SM01206	A3L04_00715
A3L04_00720	SM00931	NOSIC (NUC001) domain
A3L04_00735	SM00966	SpoVT / AbrB like domain 
A3L04_00745	SM00966	SpoVT / AbrB like domain 
A3L04_00820	SM01386	A3L04_00820
A3L04_00820	SM01387	A3L04_00820
A3L04_00835	SM01397	A3L04_00835
A3L04_00840	SM00344	helix_turn_helix ASNC type
A3L04_00850	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_00875	SM00870	A3L04_00875
A3L04_00975	SM00382	ATPases associated with a variety of cellular activities
A3L04_01065	SM00487	DEAD-like helicases superfamily
A3L04_01065	SM00490	helicase superfamily c-terminal domain
A3L04_01080	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L04_01095	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_01135	SM00849	Metallo-beta-lactamase superfamily
A3L04_01155	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_01170	SM00382	ATPases associated with a variety of cellular activities
A3L04_01210	SM00981	A3L04_01210
A3L04_01220	SM01133	A3L04_01220
A3L04_01260	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_01265	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_01290	SM00382	ATPases associated with a variety of cellular activities
A3L04_01345	SM00382	ATPases associated with a variety of cellular activities
A3L04_01360	SM00849	Metallo-beta-lactamase superfamily
A3L04_01385	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L04_01385	SM00382	ATPases associated with a variety of cellular activities
A3L04_01395	SM00981	A3L04_01395
A3L04_01400	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_01410	SM00382	ATPases associated with a variety of cellular activities
A3L04_01460	SM00382	ATPases associated with a variety of cellular activities
A3L04_01460	SM01074	CDC6, C terminal
A3L04_01470	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L04_01475	SM00849	Metallo-beta-lactamase superfamily
A3L04_01480	SM00382	ATPases associated with a variety of cellular activities
A3L04_01490	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L04_01510	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_01555	SM00382	ATPases associated with a variety of cellular activities
A3L04_01560	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L04_01560	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L04_01560	SM00382	ATPases associated with a variety of cellular activities
A3L04_01575	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_01590	SM00028	Tetratricopeptide repeats
A3L04_01605	SM00382	ATPases associated with a variety of cellular activities
A3L04_01630	SM01007	Class II Aldolase and Adducin N-terminal domain
A3L04_01655	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L04_01670	SM00382	ATPases associated with a variety of cellular activities
A3L04_01675	SM00382	ATPases associated with a variety of cellular activities
A3L04_01720	SM00487	DEAD-like helicases superfamily
A3L04_01720	SM00490	helicase superfamily c-terminal domain
A3L04_01745	SM00769	Water Stress and Hypersensitive response
A3L04_01815	SM00966	SpoVT / AbrB like domain 
A3L04_01950	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3L04_01960	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_02025	SM00382	ATPases associated with a variety of cellular activities
A3L04_02040	SM00849	Metallo-beta-lactamase superfamily
A3L04_02045	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3L04_02050	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L04_02060	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_02090	SM00382	ATPases associated with a variety of cellular activities
A3L04_02095	SM00382	ATPases associated with a variety of cellular activities
A3L04_02115	SM01211	A3L04_02115
A3L04_02160	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_02165	SM00650	Ribosomal RNA adenine dimethylases
A3L04_02180	SM00486	DNA polymerase type-B family
A3L04_02195	SM01192	A3L04_02195
A3L04_02195	SM01193	A3L04_02195
A3L04_02220	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L04_02245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L04_02260	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_02270	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_02275	SM00881	CoA binding domain
A3L04_02290	SM01400	A3L04_02290
A3L04_02295	SM01022	A3L04_02295
A3L04_02330	SM00344	helix_turn_helix ASNC type
A3L04_02335	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_02355	SM01402	A3L04_02355
A3L04_02370	SM01389	A3L04_02370
A3L04_02375	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L04_02385	SM00518	AP endonuclease family 2
A3L04_02455	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L04_02535	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_02535	SM01240	A3L04_02535
A3L04_02575	SM01329	A3L04_02575
A3L04_02600	SM00984	UDP binding domain
A3L04_02805	SM00244	prohibitin homologues
A3L04_02830	SM00260	Two component signalling adaptor domain
A3L04_02835	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3L04_02840	SM00138	Methyltransferase, chemotaxis proteins 
A3L04_02845	SM00448	cheY-homologous receiver domain
A3L04_02850	SM00448	cheY-homologous receiver domain
A3L04_02855	SM00073	Histidine Phosphotransfer domain
A3L04_02855	SM00260	Two component signalling adaptor domain
A3L04_02855	SM00387	Histidine kinase-like ATPases
A3L04_02855	SM01231	A3L04_02855
A3L04_02875	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3L04_02875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3L04_02940	SM00382	ATPases associated with a variety of cellular activities
A3L04_02945	SM00382	ATPases associated with a variety of cellular activities
A3L04_02960	SM00382	ATPases associated with a variety of cellular activities
A3L04_03005	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_03020	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3L04_03020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3L04_03030	SM00382	ATPases associated with a variety of cellular activities
A3L04_03055	SM00382	ATPases associated with a variety of cellular activities
A3L04_03055	SM01072	Cell division protein 48 (CDC48) domain 2
A3L04_03055	SM01073	Cell division protein 48 (CDC48) N-terminal domain
A3L04_03075	SM00028	Tetratricopeptide repeats
A3L04_03100	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A3L04_03140	SM00493	A3L04_03140
A3L04_03155	SM00650	Ribosomal RNA adenine dimethylases
A3L04_03175	SM01118	A3L04_03175
A3L04_03185	SM00382	ATPases associated with a variety of cellular activities
A3L04_03220	SM00530	Helix-turn-helix XRE-family like proteins 
A3L04_03245	SM00382	ATPases associated with a variety of cellular activities
A3L04_03270	SM00968	SMC proteins Flexible Hinge Domain
A3L04_03275	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
A3L04_03310	SM00881	CoA binding domain
A3L04_03355	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L04_03365	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_03390	SM01382	A3L04_03390
A3L04_03390	SM01383	A3L04_03390
A3L04_03405	SM00322	K homology RNA-binding domain
A3L04_03420	SM00538	A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
A3L04_03430	SM01374	A3L04_03430
A3L04_03435	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L04_03440	SM00363	S4 RNA-binding domain
A3L04_03440	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L04_03465	SM01393	A3L04_03465
A3L04_03470	SM01416	A3L04_03470
A3L04_03505	SM01415	A3L04_03505
A3L04_03530	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_03530	SM00530	Helix-turn-helix XRE-family like proteins 
A3L04_03550	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_03695	SM00966	SpoVT / AbrB like domain 
A3L04_03700	SM00670	Large family of predicted nucleotide-binding domains
A3L04_03755	SM00195	Dual specificity phosphatase, catalytic domain
A3L04_03755	SM00404	Protein tyrosine phosphatase, catalytic domain motif
A3L04_03785	SM01329	A3L04_03785
A3L04_03800	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A3L04_03830	SM00861	Transketolase, pyrimidine binding domain
A3L04_03865	SM00382	ATPases associated with a variety of cellular activities
A3L04_03905	SM00830	Chorismate mutase type II
A3L04_03960	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A3L04_03965	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A3L04_03975	SM00670	Large family of predicted nucleotide-binding domains
A3L04_04010	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_04015	SM00493	A3L04_04015
A3L04_04020	SM00493	A3L04_04020
A3L04_04040	SM00382	ATPases associated with a variety of cellular activities
A3L04_04040	SM00962	SRP54-type protein, GTPase domain
A3L04_04040	SM00963	SRP54-type protein, helical bundle domain
A3L04_04055	SM00344	helix_turn_helix ASNC type
A3L04_04205	SM00849	Metallo-beta-lactamase superfamily
A3L04_04210	SM01152	A3L04_04210
A3L04_04215	SM00382	ATPases associated with a variety of cellular activities
A3L04_04215	SM00962	SRP54-type protein, GTPase domain
A3L04_04215	SM00963	SRP54-type protein, helical bundle domain
A3L04_04265	SM01022	A3L04_04265
A3L04_04280	SM00382	ATPases associated with a variety of cellular activities
A3L04_04300	SM00852	Probable molybdopterin binding domain
A3L04_04310	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_04310	SM01136	A3L04_04310
A3L04_04345	SM00363	S4 RNA-binding domain
A3L04_04345	SM01390	A3L04_04345
A3L04_04355	SM00662	RNA polymerases D
A3L04_04395	SM01192	A3L04_04395
A3L04_04395	SM01193	A3L04_04395
A3L04_04450	SM00984	UDP binding domain
A3L04_04475	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_04505	SM00849	Metallo-beta-lactamase superfamily
A3L04_04520	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L04_04520	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L04_04540	SM00382	ATPases associated with a variety of cellular activities
A3L04_04550	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A3L04_04565	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_04575	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A3L04_04580	SM00344	helix_turn_helix ASNC type
A3L04_04620	SM01194	A3L04_04620
A3L04_04685	SM00652	eukaryotic translation initiation factor 1A
A3L04_04690	SM00090	RIO-like kinase
A3L04_04695	SM00322	K homology RNA-binding domain
A3L04_04700	SM00387	Histidine kinase-like ATPases
A3L04_04750	SM00948	Proteasome subunit A N-terminal signature  Add an annotation
A3L04_04760	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L04_04760	SM00322	K homology RNA-binding domain
A3L04_04805	SM00663	RNA polymerase I subunit A N-terminus
A3L04_04860	SM00344	helix_turn_helix ASNC type
A3L04_04930	SM00530	Helix-turn-helix XRE-family like proteins 
A3L04_04940	SM00382	ATPases associated with a variety of cellular activities
A3L04_04980	SM01407	A3L04_04980
A3L04_04995	SM00344	helix_turn_helix ASNC type
A3L04_05000	SM00651	snRNP Sm proteins
A3L04_05010	SM00881	CoA binding domain
A3L04_05030	SM00506	Appr-1"-p processing enzyme
A3L04_05040	SM00244	prohibitin homologues
A3L04_05065	SM01325	A3L04_05065
A3L04_05070	SM00382	ATPases associated with a variety of cellular activities
A3L04_05085	SM00849	Metallo-beta-lactamase superfamily
A3L04_05095	SM00530	Helix-turn-helix XRE-family like proteins 
A3L04_05105	SM00382	ATPases associated with a variety of cellular activities
A3L04_05135	SM00382	ATPases associated with a variety of cellular activities
A3L04_05220	SM00344	helix_turn_helix ASNC type
A3L04_05315	SM00382	ATPases associated with a variety of cellular activities
A3L04_05325	SM00849	Metallo-beta-lactamase superfamily
A3L04_05335	SM00318	Staphylococcal nuclease homologues
A3L04_05350	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L04_05360	SM00487	DEAD-like helicases superfamily
A3L04_05390	SM00382	ATPases associated with a variety of cellular activities
A3L04_05405	SM00946	Prolyl-tRNA synthetase, C-terminal
A3L04_05420	SM00487	DEAD-like helicases superfamily
A3L04_05420	SM00490	helicase superfamily c-terminal domain
A3L04_05470	SM00849	Metallo-beta-lactamase superfamily
A3L04_05550	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_05580	SM00797	Allophanate hydrolase subunit 2
A3L04_05585	SM00796	Allophanate hydrolase subunit 1
A3L04_05620	SM00382	ATPases associated with a variety of cellular activities
A3L04_05650	SM00382	ATPases associated with a variety of cellular activities
A3L04_05760	SM00562	A3L04_05760
A3L04_05770	SM00487	DEAD-like helicases superfamily
A3L04_05770	SM00488	A3L04_05770
A3L04_05770	SM00491	A3L04_05770
A3L04_05790	SM00917	LeuA allosteric (dimerisation) domain
A3L04_05805	SM01329	A3L04_05805
A3L04_05810	SM00917	LeuA allosteric (dimerisation) domain
A3L04_05845	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_05850	SM00382	ATPases associated with a variety of cellular activities
A3L04_05850	SM01072	Cell division protein 48 (CDC48) domain 2
A3L04_05850	SM01073	Cell division protein 48 (CDC48) N-terminal domain
A3L04_05965	SM00440	C2C2 Zinc finger
A3L04_05965	SM00661	RNA polymerase subunit 9
A3L04_05990	SM00873	B3/4 domain
A3L04_05990	SM00874	tRNA synthetase B5 domain
A3L04_05995	SM00829	Enoylreductase
A3L04_06010	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L04_06010	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L04_06010	SM00382	ATPases associated with a variety of cellular activities
A3L04_06035	SM00981	A3L04_06035
A3L04_06080	SM00840	A3L04_06080
A3L04_06175	SM00852	Probable molybdopterin binding domain
A3L04_06205	SM01022	A3L04_06205
A3L04_06270	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_06315	SM00933	A3L04_06315
A3L04_06370	SM00966	SpoVT / AbrB like domain 
A3L04_06610	SM00849	Metallo-beta-lactamase superfamily
A3L04_06660	SM00465	GIY-YIG type nucleases (URI domain)
A3L04_06665	SM00382	ATPases associated with a variety of cellular activities
A3L04_06665	SM00670	Large family of predicted nucleotide-binding domains
A3L04_06675	SM00989	A3L04_06675
A3L04_06695	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_06720	SM00382	ATPases associated with a variety of cellular activities
A3L04_06720	SM00487	DEAD-like helicases superfamily
A3L04_06720	SM00490	helicase superfamily c-terminal domain
A3L04_06730	SM00881	CoA binding domain
A3L04_06765	SM00322	K homology RNA-binding domain
A3L04_06775	SM00872	Alpha mannosidase, middle domain
A3L04_06780	SM00670	Large family of predicted nucleotide-binding domains
A3L04_06790	SM00382	ATPases associated with a variety of cellular activities
A3L04_06795	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_06890	SM00355	zinc finger
A3L04_06895	SM00849	Metallo-beta-lactamase superfamily
A3L04_06945	SM00382	ATPases associated with a variety of cellular activities
A3L04_06960	SM00849	Metallo-beta-lactamase superfamily
A3L04_06965	SM01376	A3L04_06965
A3L04_07030	SM00382	ATPases associated with a variety of cellular activities
A3L04_07070	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L04_07120	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L04_07125	SM00382	ATPases associated with a variety of cellular activities
A3L04_07135	SM00382	ATPases associated with a variety of cellular activities
A3L04_07225	SM00864	Tubulin/FtsZ family, GTPase domain
A3L04_07240	SM00487	DEAD-like helicases superfamily
A3L04_07240	SM00490	helicase superfamily c-terminal domain
A3L04_07265	SM01413	A3L04_07265
A3L04_07270	SM01103	A3L04_07270
A3L04_07340	SM00481	DNA polymerase alpha chain like domain
A3L04_07355	SM00981	A3L04_07355
A3L04_07370	SM00470	ParB-like nuclease domain
A3L04_07395	SM01377	A3L04_07395
A3L04_07430	SM00966	SpoVT / AbrB like domain 
A3L04_07440	SM00845	GatB domain
A3L04_07445	SM00870	A3L04_07445
A3L04_07665	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A3L04_07665	SM00484	Xeroderma pigmentosum G I-region
A3L04_07665	SM00485	Xeroderma pigmentosum G N-region
A3L04_07675	SM00382	ATPases associated with a variety of cellular activities
A3L04_07680	SM00382	ATPases associated with a variety of cellular activities
A3L04_07705	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_07710	SM00322	K homology RNA-binding domain
A3L04_07710	SM00849	Metallo-beta-lactamase superfamily
A3L04_07710	SM01027	Beta-Casp domain
A3L04_07750	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_07790	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_07810	SM00530	Helix-turn-helix XRE-family like proteins 
A3L04_07815	SM00986	Uracil DNA glycosylase superfamily
A3L04_07815	SM00987	UreE urease accessory protein, C-terminal domain 
A3L04_07845	SM00836	DALR anticodon binding domain
A3L04_07845	SM01016	Arginyl tRNA synthetase N terminal dom
A3L04_07850	SM01194	A3L04_07850
A3L04_07860	SM00385	domain present in cyclins, TFIIB and Retinoblastoma
A3L04_07870	SM01403	A3L04_07870
A3L04_07910	SM00746	metallochaperone-like domain
A3L04_07935	SM00478	endonuclease III
A3L04_07935	SM00525	A3L04_07935
A3L04_07940	SM01072	Cell division protein 48 (CDC48) domain 2
A3L04_07945	SM00344	helix_turn_helix ASNC type
A3L04_07955	SM00636	A3L04_07955
A3L04_07960	SM00637	A3L04_07960
A3L04_07975	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_08005	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L04_08150	SM00981	A3L04_08150
A3L04_08155	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L04_08180	SM01022	A3L04_08180
A3L04_08185	SM00849	Metallo-beta-lactamase superfamily
A3L04_08270	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L04_08280	SM00232	JAB/MPN domain
A3L04_08290	SM00382	ATPases associated with a variety of cellular activities
A3L04_08295	SM00382	ATPases associated with a variety of cellular activities
A3L04_08355	SM00382	ATPases associated with a variety of cellular activities
A3L04_08360	SM00382	ATPases associated with a variety of cellular activities
A3L04_08370	SM00709	Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
A3L04_08400	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A3L04_08485	SM00382	ATPases associated with a variety of cellular activities
A3L04_08490	SM00487	DEAD-like helicases superfamily
A3L04_08490	SM00490	helicase superfamily c-terminal domain
A3L04_08540	SM00933	A3L04_08540
A3L04_08630	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_08650	SM00487	DEAD-like helicases superfamily
A3L04_08710	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_08730	SM00344	helix_turn_helix ASNC type
A3L04_08735	SM01118	A3L04_08735
A3L04_08770	SM00899	A3L04_08770
A3L04_08815	SM00529	Helix-turn-helix diphteria tox regulatory element
A3L04_08850	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_08905	SM01384	A3L04_08905
A3L04_08915	SM00966	SpoVT / AbrB like domain 
A3L04_09030	SM00487	DEAD-like helicases superfamily
A3L04_09030	SM00490	helicase superfamily c-terminal domain
A3L04_09170	SM00344	helix_turn_helix ASNC type
A3L04_09180	SM00881	CoA binding domain
A3L04_09195	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L04_09255	SM00998	Adenylosuccinate lyase C-terminus
A3L04_09280	SM00382	ATPases associated with a variety of cellular activities
A3L04_09295	SM00996	S-adenosyl-L-homocysteine hydrolase
A3L04_09295	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A3L04_09305	SM00382	ATPases associated with a variety of cellular activities
A3L04_09330	SM00919	Malic enzyme, NAD binding domain
A3L04_09330	SM01274	A3L04_09330
A3L04_09355	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L04_09355	SM00487	DEAD-like helicases superfamily
A3L04_09355	SM00490	helicase superfamily c-terminal domain
A3L04_09400	SM00903	Flavin reductase like domain
A3L04_09445	SM00637	A3L04_09445
A3L04_09470	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L04_09475	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L04_09560	SM01001	AIR carboxylase
A3L04_09580	SM01209	A3L04_09580
A3L04_09580	SM01210	A3L04_09580
A3L04_09595	SM00460	Transglutaminase/protease-like homologues
A3L04_09620	SM00564	beta-propeller repeat
A3L04_09650	SM00981	A3L04_09650
A3L04_09665	SM00382	ATPases associated with a variety of cellular activities
A3L04_09675	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L04_09695	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L04_09730	SM00653	domain present in translation initiation factor eIF2B and eIF5
A3L04_09735	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L04_09735	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L04_09735	SM00350	minichromosome  maintenance proteins
A3L04_09765	SM01405	A3L04_09765
A3L04_09780	SM00531	Transcription initiation factor IIE
A3L04_09800	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3L04_09800	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3L04_09800	SM00493	A3L04_09800
A3L04_09810	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
A3L04_09815	SM00382	ATPases associated with a variety of cellular activities
A3L04_09815	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3L04_09815	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3L04_09815	SM00487	DEAD-like helicases superfamily
A3L04_09815	SM00493	A3L04_09815
A3L04_09830	SM00661	RNA polymerase subunit 9
A3L04_09845	SM00382	ATPases associated with a variety of cellular activities
A3L04_09850	SM00382	ATPases associated with a variety of cellular activities
A3L04_09895	SM00478	endonuclease III
A3L04_09900	SM00530	Helix-turn-helix XRE-family like proteins 
A3L04_09965	SM00864	Tubulin/FtsZ family, GTPase domain
A3L04_09965	SM00865	Tubulin/FtsZ family, C-terminal domain
A3L04_09985	SM00382	ATPases associated with a variety of cellular activities
A3L04_10005	SM00881	CoA binding domain
A3L04_10280	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L04_10310	SM01022	A3L04_10310
A3L04_10315	SM01022	A3L04_10315
A3L04_10325	SM00220	Serine/Threonine protein kinases, catalytic domain
A3L04_10330	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3L04_10335	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3L04_10345	SM00852	Probable molybdopterin binding domain
A3L04_10365	SM00382	ATPases associated with a variety of cellular activities
A3L04_10370	SM00788	Adenylosuccinate synthetase
A3L04_10400	SM01230	A3L04_10400
A3L04_10445	SM00028	Tetratricopeptide repeats
A3L04_10460	SM00670	Large family of predicted nucleotide-binding domains
A3L04_10480	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L04_10630	SM00670	Large family of predicted nucleotide-binding domains
A3L04_10635	SM00966	SpoVT / AbrB like domain 
A3L04_10680	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
A3L04_10710	SM00470	ParB-like nuclease domain
A3L04_10725	SM01380	A3L04_10725
A3L04_10730	SM00654	translation initiation factor 6
A3L04_10780	SM00852	Probable molybdopterin binding domain
A3L04_10815	SM00090	RIO-like kinase
