locus-tag class description BD01_0023 PF02223 Thymidylate kinase BD01_0025 PF00483 Nucleotidyl transferase BD01_0027 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain BD01_0027 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain BD01_0029 PF00343 Carbohydrate phosphorylase BD01_0029 PF11897 Protein of unknown function (DUF3417) BD01_0031 PF00749 tRNA synthetases class I (E and Q), catalytic domain BD01_0031 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BD01_0039 PF00692 dUTPase BD01_0044 PF00687 Ribosomal protein L1p/L10e family BD01_0045 PF00298 Ribosomal protein L11, RNA binding domain BD01_0045 PF03946 Ribosomal protein L11, N-terminal domain BD01_0048 PF12327 FtsZ family, C-terminal domain BD01_0048 PF00091 Tubulin/FtsZ family, GTPase domain BD01_0050 PF16868 NMT1-like family BD01_0058 PF02347 Glycine cleavage system P-protein BD01_0059 PF02347 Glycine cleavage system P-protein BD01_0064 PF13367 PrsW family intramembrane metalloprotease BD01_0069 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_0069 PF13192 Thioredoxin domain BD01_0070 PF01266 FAD dependent oxidoreductase BD01_0073 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BD01_0073 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BD01_0076 PF03009 Glycerophosphoryl diester phosphodiesterase family BD01_0077 PF03009 Glycerophosphoryl diester phosphodiesterase family BD01_0081 PF01934 Protein of unknown function DUF86 BD01_0082 PF12697 Alpha/beta hydrolase family BD01_0086 PF01554 MatE BD01_0087 PF01554 MatE BD01_0089 PF02384 N-6 DNA Methylase BD01_0090 PF00391 PEP-utilising enzyme, mobile domain BD01_0090 PF02896 PEP-utilising enzyme, TIM barrel domain BD01_0090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BD01_0095 PF00082 Subtilase family BD01_0095 PF00082 Subtilase family BD01_0098 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BD01_0098 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_0102 PF01926 50S ribosome-binding GTPase BD01_0102 PF04055 Radical SAM superfamily BD01_0102 PF01018 GTP1/OBG BD01_0107 PF00266 Aminotransferase class-V BD01_0109 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BD01_0110 PF13193 AMP-binding enzyme C-terminal domain BD01_0110 PF16177 Acetyl-coenzyme A synthetase N-terminus BD01_0110 PF00501 AMP-binding enzyme BD01_0111 PF02769 AIR synthase related protein, C-terminal domain BD01_0111 PF00586 AIR synthase related protein, N-terminal domain BD01_0114 PF17788 HypF Kae1-like domain BD01_0114 PF01300 Telomere recombination BD01_0114 PF07503 HypF finger BD01_0114 PF00708 Acylphosphatase BD01_0115 PF01924 Hydrogenase formation hypA family BD01_0116 PF01455 HupF/HypC family BD01_0119 PF00440 Bacterial regulatory proteins, tetR family BD01_0120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD01_0120 PF00384 Molybdopterin oxidoreductase BD01_0120 PF01568 Molydopterin dinucleotide binding domain BD01_0120 PF12838 4Fe-4S dicluster domain BD01_0120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BD01_0121 PF13247 4Fe-4S dicluster domain BD01_0121 PF00037 4Fe-4S binding domain BD01_0122 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BD01_0122 PF00361 Proton-conducting membrane transporter BD01_0122 PF13244 Domain of unknown function (DUF4040) BD01_0122 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BD01_0123 PF00361 Proton-conducting membrane transporter BD01_0124 PF00146 NADH dehydrogenase BD01_0125 PF00374 Nickel-dependent hydrogenase BD01_0125 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BD01_0125 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BD01_0126 PF12838 4Fe-4S dicluster domain BD01_0127 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BD01_0130 PF12804 MobA-like NTP transferase domain BD01_0136 PF10609 NUBPL iron-transfer P-loop NTPase BD01_0138 PF01545 Cation efflux family BD01_0144 PF01032 FecCD transport family BD01_0145 PF00005 ABC transporter BD01_0147 PF00753 Metallo-beta-lactamase superfamily BD01_0147 PF12706 Beta-lactamase superfamily domain BD01_0150 PF06560 Glucose-6-phosphate isomerase (GPI) BD01_0154 PF01050 Mannose-6-phosphate isomerase BD01_0154 PF00483 Nucleotidyl transferase BD01_0155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BD01_0155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BD01_0155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BD01_0155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BD01_0162 PF00005 ABC transporter BD01_0165 PF00005 ABC transporter BD01_0166 PF02361 Cobalt transport protein BD01_0168 PF01891 Cobalt uptake substrate-specific transmembrane region BD01_0168 PF13190 PDGLE domain BD01_0171 PF00013 KH domain BD01_0171 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BD01_0171 PF00575 S1 RNA binding domain BD01_0171 PF03725 3' exoribonuclease family, domain 2 BD01_0171 PF01138 3' exoribonuclease family, domain 1 BD01_0177 PF00155 Aminotransferase class I and II BD01_0180 PF01131 DNA topoisomerase BD01_0180 PF01751 Toprim domain BD01_0180 PF01396 Topoisomerase DNA binding C4 zinc finger BD01_0182 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_0185 PF13192 Thioredoxin domain BD01_0185 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_0187 PF04561 RNA polymerase Rpb2, domain 2 BD01_0187 PF10385 RNA polymerase beta subunit external 1 domain BD01_0187 PF04565 RNA polymerase Rpb2, domain 3 BD01_0187 PF04563 RNA polymerase beta subunit BD01_0187 PF00562 RNA polymerase Rpb2, domain 6 BD01_0187 PF04560 RNA polymerase Rpb2, domain 7 BD01_0188 PF05000 RNA polymerase Rpb1, domain 4 BD01_0188 PF04998 RNA polymerase Rpb1, domain 5 BD01_0188 PF04983 RNA polymerase Rpb1, domain 3 BD01_0188 PF04997 RNA polymerase Rpb1, domain 1 BD01_0188 PF00623 RNA polymerase Rpb1, domain 2 BD01_0189 PF04998 RNA polymerase Rpb1, domain 5 BD01_0189 PF05000 RNA polymerase Rpb1, domain 4 BD01_0189 PF00623 RNA polymerase Rpb1, domain 2 BD01_0189 PF04997 RNA polymerase Rpb1, domain 1 BD01_0189 PF04983 RNA polymerase Rpb1, domain 3 BD01_0193 PF00177 Ribosomal protein S7p/S5e BD01_0208 PF18019 HD domain BD01_0208 PF00270 DEAD/DEAH box helicase BD01_0208 PF00271 Helicase conserved C-terminal domain BD01_0210 PF01867 CRISPR associated protein Cas1 BD01_0211 PF09827 CRISPR associated protein Cas2 BD01_0213 PF13380 CoA binding domain BD01_0213 PF00583 Acetyltransferase (GNAT) family BD01_0213 PF13607 Succinyl-CoA ligase like flavodoxin domain BD01_0217 PF17915 Reverse gyrase zinc finger BD01_0217 PF01751 Toprim domain BD01_0217 PF01131 DNA topoisomerase BD01_0217 PF00270 DEAD/DEAH box helicase BD01_0222 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BD01_0224 PF13419 Haloacid dehalogenase-like hydrolase BD01_0232 PF01966 HD domain BD01_0234 PF00152 tRNA synthetases class II (D, K and N) BD01_0234 PF01336 OB-fold nucleic acid binding domain BD01_0237 PF01142 tRNA pseudouridine synthase D (TruD) BD01_0241 PF01546 Peptidase family M20/M25/M40 BD01_0241 PF07687 Peptidase dimerisation domain BD01_0251 PF01368 DHH family BD01_0251 PF02272 DHHA1 domain BD01_0251 PF03948 Ribosomal protein L9, C-terminal domain BD01_0251 PF01281 Ribosomal protein L9, N-terminal domain BD01_0254 PF00133 tRNA synthetases class I (I, L, M and V) BD01_0254 PF01588 Putative tRNA binding domain BD01_0254 PF09334 tRNA synthetases class I (M) BD01_0257 PF00248 Aldo/keto reductase family BD01_0264 PF01676 Metalloenzyme superfamily BD01_0264 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase BD01_0265 PF01699 Sodium/calcium exchanger protein BD01_0266 PF01230 HIT domain BD01_0267 PF05958 tRNA (Uracil-5-)-methyltransferase BD01_0267 PF01938 TRAM domain BD01_0267 PF02475 Met-10+ like-protein BD01_0269 PF02511 Thymidylate synthase complementing protein BD01_0270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BD01_0270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BD01_0271 PF01189 16S rRNA methyltransferase RsmB/F BD01_0271 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BD01_0271 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BD01_0274 PF03435 Saccharopine dehydrogenase NADP binding domain BD01_0274 PF16653 Saccharopine dehydrogenase C-terminal domain BD01_0279 PF03600 Citrate transporter BD01_0281 PF00491 Arginase family BD01_0282 PF00999 Sodium/hydrogen exchanger family BD01_0283 PF00654 Voltage gated chloride channel BD01_0286 PF15714 Stage V sporulation protein T C-terminal, transcription factor BD01_0286 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BD01_0287 PF02769 AIR synthase related protein, C-terminal domain BD01_0287 PF00586 AIR synthase related protein, N-terminal domain BD01_0289 PF00534 Glycosyl transferases group 1 BD01_0289 PF13439 Glycosyltransferase Family 4 BD01_0290 PF01522 Polysaccharide deacetylase BD01_0295 PF00919 Uncharacterized protein family UPF0004 BD01_0295 PF01938 TRAM domain BD01_0295 PF04055 Radical SAM superfamily BD01_0297 PF00398 Ribosomal RNA adenine dimethylase BD01_0304 PF17763 Glutaminase/Asparaginase C-terminal domain BD01_0304 PF00710 Asparaginase, N-terminal BD01_0305 PF02637 GatB domain BD01_0305 PF02934 GatB/GatE catalytic domain BD01_0309 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BD01_0310 PF00107 Zinc-binding dehydrogenase BD01_0310 PF08240 Alcohol dehydrogenase GroES-like domain BD01_0311 PF01409 tRNA synthetases class II core domain (F) BD01_0313 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BD01_0313 PF03484 tRNA synthetase B5 domain BD01_0315 PF01416 tRNA pseudouridine synthase BD01_0316 PF02151 UvrB/uvrC motif BD01_0316 PF04851 Type III restriction enzyme, res subunit BD01_0316 PF17757 UvrB interaction domain BD01_0316 PF00271 Helicase conserved C-terminal domain BD01_0316 PF12344 Ultra-violet resistance protein B BD01_0317 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BD01_0319 PF00005 ABC transporter BD01_0325 PF00809 Pterin binding enzyme BD01_0326 PF01594 AI-2E family transporter BD01_0328 PF01343 Peptidase family S49 BD01_0334 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BD01_0334 PF00013 KH domain BD01_0334 PF01138 3' exoribonuclease family, domain 1 BD01_0334 PF03725 3' exoribonuclease family, domain 2 BD01_0334 PF00575 S1 RNA binding domain BD01_0335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD01_0335 PF03129 Anticodon binding domain BD01_0335 PF02824 TGS domain BD01_0335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD01_0338 PF01255 Putative undecaprenyl diphosphate synthase BD01_0339 PF00132 Bacterial transferase hexapeptide (six repeats) BD01_0346 PF00005 ABC transporter BD01_0347 PF02386 Cation transport protein BD01_0348 PF00557 Metallopeptidase family M24 BD01_0350 PF00478 IMP dehydrogenase / GMP reductase domain BD01_0350 PF00571 CBS domain BD01_0352 PF00483 Nucleotidyl transferase BD01_0354 PF00753 Metallo-beta-lactamase superfamily BD01_0354 PF16123 Hydroxyacylglutathione hydrolase C-terminus BD01_0355 PF09269 Domain of unknown function (DUF1967) BD01_0355 PF01018 GTP1/OBG BD01_0355 PF01926 50S ribosome-binding GTPase BD01_0360 PF06418 CTP synthase N-terminus BD01_0360 PF00117 Glutamine amidotransferase class-I BD01_0365 PF04055 Radical SAM superfamily BD01_0369 PF17862 AAA+ lid domain BD01_0369 PF00004 ATPase family associated with various cellular activities (AAA) BD01_0369 PF01434 Peptidase family M41 BD01_0373 PF01161 Phosphatidylethanolamine-binding protein BD01_0382 PF03063 Prismane/CO dehydrogenase family BD01_0384 PF01321 Creatinase/Prolidase N-terminal domain BD01_0384 PF00557 Metallopeptidase family M24 BD01_0386 PF00202 Aminotransferase class-III BD01_0387 PF00860 Permease family BD01_0389 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BD01_0390 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BD01_0390 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BD01_0391 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BD01_0393 PF00361 Proton-conducting membrane transporter BD01_0394 PF00361 Proton-conducting membrane transporter BD01_0395 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BD01_0396 PF13244 Domain of unknown function (DUF4040) BD01_0396 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BD01_0396 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BD01_0396 PF00361 Proton-conducting membrane transporter BD01_0398 PF03334 Na+/H+ antiporter subunit BD01_0399 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BD01_0400 PF01899 Na+/H+ ion antiporter subunit BD01_0402 PF04055 Radical SAM superfamily BD01_0402 PF06463 Molybdenum Cofactor Synthesis C BD01_0405 PF02350 UDP-N-acetylglucosamine 2-epimerase BD01_0406 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BD01_0406 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BD01_0406 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BD01_0410 PF00750 tRNA synthetases class I (R) BD01_0410 PF03485 Arginyl tRNA synthetase N terminal domain BD01_0410 PF05746 DALR anticodon binding domain BD01_0423 PF05343 M42 glutamyl aminopeptidase BD01_0438 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BD01_0439 PF00175 Oxidoreductase NAD-binding domain BD01_0439 PF00970 Oxidoreductase FAD-binding domain BD01_0439 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BD01_0443 PF01497 Periplasmic binding protein BD01_0444 PF01381 Helix-turn-helix BD01_0447 PF02080 TrkA-C domain BD01_0447 PF02254 TrkA-N domain BD01_0451 PF04493 Endonuclease V BD01_0453 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) BD01_0455 PF00149 Calcineurin-like phosphoesterase BD01_0457 PF00155 Aminotransferase class I and II BD01_0461 PF13419 Haloacid dehalogenase-like hydrolase BD01_0462 PF01458 Uncharacterized protein family (UPF0051) BD01_0463 PF00005 ABC transporter BD01_0464 PF02190 ATP-dependent protease La (LON) substrate-binding domain BD01_0464 PF00004 ATPase family associated with various cellular activities (AAA) BD01_0464 PF05362 Lon protease (S16) C-terminal proteolytic domain BD01_0466 PF01042 Endoribonuclease L-PSP BD01_0468 PF01022 Bacterial regulatory protein, arsR family BD01_0469 PF03819 MazG nucleotide pyrophosphohydrolase domain BD01_0470 PF01037 Lrp/AsnC ligand binding domain BD01_0470 PF13404 AsnC-type helix-turn-helix domain BD01_0471 PF01940 Integral membrane protein DUF92 BD01_0472 PF02568 Thiamine biosynthesis protein (ThiI) BD01_0472 PF02926 THUMP domain BD01_0477 PF00312 Ribosomal protein S15 BD01_0495 PF07690 Major Facilitator Superfamily BD01_0499 PF01923 Cobalamin adenosyltransferase BD01_0501 PF01008 Initiation factor 2 subunit family BD01_0502 PF18073 Rubredoxin metal binding domain BD01_0503 PF00326 Prolyl oligopeptidase family BD01_0503 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BD01_0504 PF01872 RibD C-terminal domain BD01_0504 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BD01_0505 PF00677 Lumazine binding domain BD01_0506 PF00925 GTP cyclohydrolase II BD01_0506 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BD01_0507 PF00885 6,7-dimethyl-8-ribityllumazine synthase BD01_0511 PF01259 SAICAR synthetase BD01_0512 PF01964 Radical SAM ThiC family BD01_0514 PF02581 Thiamine monophosphate synthase BD01_0514 PF08543 Phosphomethylpyrimidine kinase BD01_0515 PF00005 ABC transporter BD01_0515 PF09383 NIL domain BD01_0518 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD01_0519 PF09190 DALR domain BD01_0519 PF01406 tRNA synthetases class I (C) catalytic domain BD01_0522 PF08264 Anticodon-binding domain of tRNA BD01_0522 PF09334 tRNA synthetases class I (M) BD01_0522 PF01588 Putative tRNA binding domain BD01_0530 PF01925 Sulfite exporter TauE/SafE BD01_0532 PF01925 Sulfite exporter TauE/SafE BD01_0534 PF18277 AbrB C-terminal domain BD01_0534 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BD01_0536 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BD01_0536 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD01_0537 PF03129 Anticodon binding domain BD01_0537 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD01_0537 PF09180 Prolyl-tRNA synthetase, C-terminal BD01_0539 PF02543 Carbamoyltransferase N-terminus BD01_0539 PF16861 Carbamoyltransferase C-terminus BD01_0540 PF01177 Asp/Glu/Hydantoin racemase BD01_0541 PF00924 Mechanosensitive ion channel BD01_0541 PF05552 Conserved TM helix BD01_0542 PF02441 Flavoprotein BD01_0542 PF04127 DNA / pantothenate metabolism flavoprotein BD01_0544 PF02641 Uncharacterized ACR, COG1993 BD01_0545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BD01_0551 PF00578 AhpC/TSA family BD01_0552 PF00224 Pyruvate kinase, barrel domain BD01_0552 PF00391 PEP-utilising enzyme, mobile domain BD01_0552 PF02887 Pyruvate kinase, alpha/beta domain BD01_0554 PF02441 Flavoprotein BD01_0555 PF13404 AsnC-type helix-turn-helix domain BD01_0555 PF01037 Lrp/AsnC ligand binding domain BD01_0557 PF06071 Protein of unknown function (DUF933) BD01_0557 PF01926 50S ribosome-binding GTPase BD01_0558 PF16123 Hydroxyacylglutathione hydrolase C-terminus BD01_0558 PF00753 Metallo-beta-lactamase superfamily BD01_0559 PF01177 Asp/Glu/Hydantoin racemase BD01_0561 PF01523 Putative modulator of DNA gyrase BD01_0569 PF10458 Valyl tRNA synthetase tRNA binding arm BD01_0569 PF00133 tRNA synthetases class I (I, L, M and V) BD01_0569 PF08264 Anticodon-binding domain of tRNA BD01_0570 PF07690 Major Facilitator Superfamily BD01_0571 PF13649 Methyltransferase domain BD01_0572 PF00155 Aminotransferase class I and II BD01_0573 PF03186 CobD/Cbib protein BD01_0582 PF12804 MobA-like NTP transferase domain BD01_0584 PF07685 CobB/CobQ-like glutamine amidotransferase domain BD01_0585 PF02277 Phosphoribosyltransferase BD01_0589 PF00994 Probable molybdopterin binding domain BD01_0592 PF00994 Probable molybdopterin binding domain BD01_0592 PF03454 MoeA C-terminal region (domain IV) BD01_0592 PF03453 MoeA N-terminal region (domain I and II) BD01_0598 PF01966 HD domain BD01_0600 PF13302 Acetyltransferase (GNAT) domain BD01_0601 PF10417 C-terminal domain of 1-Cys peroxiredoxin BD01_0601 PF00578 AhpC/TSA family BD01_0602 PF01568 Molydopterin dinucleotide binding domain BD01_0602 PF00384 Molybdopterin oxidoreductase BD01_0602 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD01_0608 PF00464 Serine hydroxymethyltransferase BD01_0609 PF05958 tRNA (Uracil-5-)-methyltransferase BD01_0612 PF11987 Translation-initiation factor 2 BD01_0612 PF00009 Elongation factor Tu GTP binding domain BD01_0612 PF04760 Translation initiation factor IF-2, N-terminal region BD01_0612 PF08364 Bacterial translation initiation factor IF-2 associated region BD01_0614 PF00334 Nucleoside diphosphate kinase BD01_0620 PF01507 Phosphoadenosine phosphosulfate reductase family BD01_0631 PF13419 Haloacid dehalogenase-like hydrolase BD01_0633 PF02146 Sir2 family BD01_0635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD01_0635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BD01_0641 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system BD01_0641 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system BD01_0644 PF01624 MutS domain I BD01_0644 PF05192 MutS domain III BD01_0644 PF05188 MutS domain II BD01_0644 PF00488 MutS domain V BD01_0644 PF05190 MutS family domain IV BD01_0645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_0645 PF02743 Cache domain BD01_0645 PF00672 HAMP domain BD01_0646 PF00069 Protein kinase domain BD01_0646 PF03793 PASTA domain BD01_0648 PF00118 TCP-1/cpn60 chaperonin family BD01_0649 PF01435 Peptidase family M48 BD01_0650 PF01979 Amidohydrolase family BD01_0652 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BD01_0652 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_0653 PF01916 Deoxyhypusine synthase BD01_0658 PF03600 Citrate transporter BD01_0662 PF00881 Nitroreductase family BD01_0665 PF00361 Proton-conducting membrane transporter BD01_0666 PF01899 Na+/H+ ion antiporter subunit BD01_0667 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BD01_0670 PF03334 Na+/H+ antiporter subunit BD01_0671 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BD01_0673 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BD01_0673 PF00361 Proton-conducting membrane transporter BD01_0674 PF00210 Ferritin-like domain BD01_0676 PF00753 Metallo-beta-lactamase superfamily BD01_0676 PF00258 Flavodoxin BD01_0677 PF02915 Rubrerythrin BD01_0678 PF00301 Rubredoxin BD01_0679 PF01880 Desulfoferrodoxin BD01_0692 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD01_0692 PF02272 DHHA1 domain BD01_0692 PF01411 tRNA synthetases class II (A) BD01_0695 PF08402 TOBE domain BD01_0695 PF00005 ABC transporter BD01_0696 PF00528 Binding-protein-dependent transport system inner membrane component BD01_0700 PF01037 Lrp/AsnC ligand binding domain BD01_0700 PF13404 AsnC-type helix-turn-helix domain BD01_0706 PF02361 Cobalt transport protein BD01_0707 PF00005 ABC transporter BD01_0708 PF02632 BioY family BD01_0713 PF07676 WD40-like Beta Propeller Repeat BD01_0713 PF00326 Prolyl oligopeptidase family BD01_0714 PF08351 Domain of unknown function (DUF1726) BD01_0714 PF13718 GNAT acetyltransferase 2 BD01_0714 PF05127 Helicase BD01_0714 PF17176 tRNA-binding domain BD01_0722 PF03793 PASTA domain BD01_0722 PF00069 Protein kinase domain BD01_0723 PF01434 Peptidase family M41 BD01_0723 PF17862 AAA+ lid domain BD01_0723 PF00004 ATPase family associated with various cellular activities (AAA) BD01_0724 PF03793 PASTA domain BD01_0724 PF00069 Protein kinase domain BD01_0726 PF03793 PASTA domain BD01_0726 PF00069 Protein kinase domain BD01_0728 PF01979 Amidohydrolase family BD01_0729 PF00152 tRNA synthetases class II (D, K and N) BD01_0729 PF01336 OB-fold nucleic acid binding domain BD01_0733 PF01702 Queuine tRNA-ribosyltransferase BD01_0734 PF01384 Phosphate transporter family BD01_0735 PF00535 Glycosyl transferase family 2 BD01_0737 PF00271 Helicase conserved C-terminal domain BD01_0737 PF00270 DEAD/DEAH box helicase BD01_0737 PF08494 DEAD/H associated BD01_0738 PF00557 Metallopeptidase family M24 BD01_0738 PF01321 Creatinase/Prolidase N-terminal domain BD01_0741 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase BD01_0745 PF01554 MatE BD01_0748 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD01_0748 PF03129 Anticodon binding domain BD01_0749 PF01934 Protein of unknown function DUF86 BD01_0754 PF02594 Uncharacterised ACR, YggU family COG1872 BD01_0756 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BD01_0756 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BD01_0757 PF18146 Damage-inducible protein CinA KH domain BD01_0757 PF00994 Probable molybdopterin binding domain BD01_0757 PF02464 Competence-damaged protein BD01_0762 PF06508 Queuosine biosynthesis protein QueC BD01_0765 PF07670 Nucleoside recognition BD01_0765 PF17910 FeoB cytosolic helical domain BD01_0765 PF04023 FeoA domain BD01_0765 PF02421 Ferrous iron transport protein B BD01_0765 PF07664 Ferrous iron transport protein B C terminus BD01_0768 PF00483 Nucleotidyl transferase BD01_0775 PF01297 Zinc-uptake complex component A periplasmic BD01_0781 PF00448 SRP54-type protein, GTPase domain BD01_0781 PF02881 SRP54-type protein, helical bundle domain BD01_0786 PF01975 Survival protein SurE BD01_0793 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BD01_0793 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BD01_0793 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BD01_0794 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD01_0798 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BD01_0798 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BD01_0798 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BD01_0799 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD01_0806 PF01242 6-pyruvoyl tetrahydropterin synthase BD01_0810 PF02545 Maf-like protein BD01_0813 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BD01_0815 PF00733 Asparagine synthase BD01_0815 PF13537 Glutamine amidotransferase domain BD01_0816 PF00534 Glycosyl transferases group 1 BD01_0816 PF13439 Glycosyltransferase Family 4 BD01_0817 PF01300 Telomere recombination BD01_0817 PF03481 Putative GTP-binding controlling metal-binding BD01_0822 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BD01_0822 PF02403 Seryl-tRNA synthetase N-terminal domain BD01_0823 PF17862 AAA+ lid domain BD01_0823 PF06480 FtsH Extracellular BD01_0823 PF01434 Peptidase family M41 BD01_0823 PF00004 ATPase family associated with various cellular activities (AAA) BD01_0824 PF03453 MoeA N-terminal region (domain I and II) BD01_0824 PF03454 MoeA C-terminal region (domain IV) BD01_0824 PF00994 Probable molybdopterin binding domain BD01_0827 PF00004 ATPase family associated with various cellular activities (AAA) BD01_0827 PF17862 AAA+ lid domain BD01_0827 PF01434 Peptidase family M41 BD01_0827 PF06480 FtsH Extracellular BD01_0829 PF16363 GDP-mannose 4,6 dehydratase BD01_0831 PF00709 Adenylosuccinate synthetase BD01_0833 PF12146 Serine aminopeptidase, S33 BD01_0838 PF02374 Anion-transporting ATPase BD01_0838 PF17886 HSP20-like domain found in ArsA BD01_0840 PF02554 Carbon starvation protein CstA BD01_0840 PF13722 5TM C-terminal transporter carbon starvation CstA BD01_0841 PF00364 Biotin-requiring enzyme BD01_0841 PF00682 HMGL-like BD01_0841 PF02436 Conserved carboxylase domain BD01_0842 PF01791 DeoC/LacD family aldolase BD01_0843 PF08279 HTH domain BD01_0843 PF02237 Biotin protein ligase C terminal domain BD01_0843 PF03099 Biotin/lipoate A/B protein ligase family BD01_0844 PF00375 Sodium:dicarboxylate symporter family BD01_0860 PF00583 Acetyltransferase (GNAT) family BD01_0860 PF13607 Succinyl-CoA ligase like flavodoxin domain BD01_0860 PF13380 CoA binding domain BD01_0865 PF10609 NUBPL iron-transfer P-loop NTPase BD01_0866 PF01883 Iron-sulfur cluster assembly protein BD01_0866 PF10609 NUBPL iron-transfer P-loop NTPase BD01_0873 PF00005 ABC transporter BD01_0877 PF00171 Aldehyde dehydrogenase family BD01_0878 PF18389 TrmO C-terminal domain BD01_0878 PF01980 tRNA-methyltransferase O BD01_0884 PF00132 Bacterial transferase hexapeptide (six repeats) BD01_0884 PF12804 MobA-like NTP transferase domain BD01_0884 PF03479 Plants and Prokaryotes Conserved (PCC) domain BD01_0887 PF02001 Protein of unknown function DUF134 BD01_0890 PF10397 Adenylosuccinate lyase C-terminus BD01_0890 PF00206 Lyase BD01_0893 PF01380 SIS domain BD01_0893 PF00571 CBS domain BD01_0895 PF01008 Initiation factor 2 subunit family BD01_0898 PF00465 Iron-containing alcohol dehydrogenase BD01_0899 PF07690 Major Facilitator Superfamily BD01_0902 PF00270 DEAD/DEAH box helicase BD01_0902 PF08494 DEAD/H associated BD01_0902 PF00271 Helicase conserved C-terminal domain BD01_0904 PF01546 Peptidase family M20/M25/M40 BD01_0904 PF07687 Peptidase dimerisation domain BD01_0905 PF00753 Metallo-beta-lactamase superfamily BD01_0908 PF01026 TatD related DNase BD01_0911 PF02811 PHP domain BD01_0912 PF02310 B12 binding domain BD01_0912 PF01642 Methylmalonyl-CoA mutase BD01_0916 PF02463 RecF/RecN/SMC N terminal domain BD01_0916 PF06470 SMC proteins Flexible Hinge Domain BD01_0924 PF00271 Helicase conserved C-terminal domain BD01_0924 PF00270 DEAD/DEAH box helicase BD01_0929 PF00271 Helicase conserved C-terminal domain BD01_0929 PF00270 DEAD/DEAH box helicase BD01_0932 PF00338 Ribosomal protein S10p/S20e BD01_0933 PF03143 Elongation factor Tu C-terminal domain BD01_0933 PF00009 Elongation factor Tu GTP binding domain BD01_0933 PF03144 Elongation factor Tu domain 2 BD01_0934 PF00009 Elongation factor Tu GTP binding domain BD01_0934 PF03764 Elongation factor G, domain IV BD01_0934 PF14492 Elongation Factor G, domain II BD01_0934 PF00679 Elongation factor G C-terminus BD01_0934 PF03144 Elongation factor Tu domain 2 BD01_0935 PF01966 HD domain BD01_0936 PF00005 ABC transporter BD01_0945 PF02649 Type I GTP cyclohydrolase folE2 BD01_0949 PF00512 His Kinase A (phospho-acceptor) domain BD01_0949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD01_0949 PF00672 HAMP domain BD01_0953 PF00005 ABC transporter BD01_0955 PF01351 Ribonuclease HII BD01_0959 PF01380 SIS domain BD01_0962 PF01910 Thiamine-binding protein BD01_0965 PF05191 Adenylate kinase, active site lid BD01_0972 PF01884 PcrB family BD01_0977 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain BD01_0977 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 BD01_0990 PF00586 AIR synthase related protein, N-terminal domain BD01_0990 PF02769 AIR synthase related protein, C-terminal domain BD01_0991 PF00005 ABC transporter BD01_0993 PF01205 Uncharacterized protein family UPF0029 BD01_0993 PF09186 Domain of unknown function (DUF1949) BD01_0998 PF02548 Ketopantoate hydroxymethyltransferase BD01_1002 PF01189 16S rRNA methyltransferase RsmB/F BD01_1002 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BD01_1002 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BD01_1004 PF01139 tRNA-splicing ligase RtcB BD01_1007 PF00005 ABC transporter BD01_1008 PF01967 MoaC family BD01_1010 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BD01_1010 PF02885 Glycosyl transferase family, helical bundle domain BD01_1010 PF00591 Glycosyl transferase family, a/b domain BD01_1013 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BD01_1014 PF16200 C-terminal region of band_7 BD01_1014 PF01145 SPFH domain / Band 7 family BD01_1017 PF00730 HhH-GPD superfamily base excision DNA repair protein BD01_1021 PF01202 Shikimate kinase BD01_1023 PF03746 LamB/YcsF family BD01_1024 PF02682 Carboxyltransferase domain, subdomain C and D BD01_1027 PF02626 Carboxyltransferase domain, subdomain A and B BD01_1029 PF00465 Iron-containing alcohol dehydrogenase BD01_1032 PF00459 Inositol monophosphatase family BD01_1037 PF06733 DEAD_2 BD01_1037 PF13307 Helicase C-terminal domain BD01_1042 PF17746 SfsA N-terminal OB domain BD01_1042 PF03749 Sugar fermentation stimulation protein RE domain BD01_1044 PF02899 Phage integrase, N-terminal SAM-like domain BD01_1044 PF00589 Phage integrase family BD01_1046 PF17645 Arylmalonate decarboxylase BD01_1049 PF02926 THUMP domain BD01_1049 PF02568 Thiamine biosynthesis protein (ThiI) BD01_1051 PF02926 THUMP domain BD01_1051 PF02568 Thiamine biosynthesis protein (ThiI) BD01_1053 PF00291 Pyridoxal-phosphate dependent enzyme BD01_1055 PF00583 Acetyltransferase (GNAT) family BD01_1055 PF13607 Succinyl-CoA ligase like flavodoxin domain BD01_1055 PF13380 CoA binding domain BD01_1062 PF00730 HhH-GPD superfamily base excision DNA repair protein BD01_1062 PF00633 Helix-hairpin-helix motif BD01_1062 PF10576 Iron-sulfur binding domain of endonuclease III BD01_1064 PF00704 Glycosyl hydrolases family 18 BD01_1064 PF00041 Fibronectin type III domain BD01_1065 PF00704 Glycosyl hydrolases family 18 BD01_1065 PF00041 Fibronectin type III domain BD01_1067 PF03551 Transcriptional regulator PadR-like family BD01_1068 PF00162 Phosphoglycerate kinase BD01_1074 PF00005 ABC transporter BD01_1077 PF00011 Hsp20/alpha crystallin family BD01_1078 PF01434 Peptidase family M41 BD01_1078 PF06480 FtsH Extracellular BD01_1078 PF17862 AAA+ lid domain BD01_1078 PF00004 ATPase family associated with various cellular activities (AAA) BD01_1091 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD01_1092 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1094 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD01_1094 PF00005 ABC transporter BD01_1095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD01_1095 PF00005 ABC transporter BD01_1098 PF12706 Beta-lactamase superfamily domain BD01_1103 PF00881 Nitroreductase family BD01_1122 PF00005 ABC transporter BD01_1124 PF07690 Major Facilitator Superfamily BD01_1125 PF01467 Cytidylyltransferase-like BD01_1125 PF00293 NUDIX domain BD01_1131 PF00483 Nucleotidyl transferase BD01_1131 PF01066 CDP-alcohol phosphatidyltransferase BD01_1132 PF13419 Haloacid dehalogenase-like hydrolase BD01_1142 PF00437 Type II/IV secretion system protein BD01_1143 PF18073 Rubredoxin metal binding domain BD01_1154 PF00891 O-methyltransferase domain BD01_1157 PF01584 CheW-like domain BD01_1158 PF16591 Helical bimodular sensor domain BD01_1158 PF00672 HAMP domain BD01_1158 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_1159 PF01739 CheR methyltransferase, SAM binding domain BD01_1159 PF03705 CheR methyltransferase, all-alpha domain BD01_1160 PF00072 Response regulator receiver domain BD01_1161 PF01339 CheB methylesterase BD01_1161 PF00072 Response regulator receiver domain BD01_1162 PF07194 P2 response regulator binding domain BD01_1162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BD01_1162 PF02895 Signal transducing histidine kinase, homodimeric domain BD01_1162 PF01584 CheW-like domain BD01_1162 PF01627 Hpt domain BD01_1165 PF03975 CheD chemotactic sensory transduction BD01_1166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_1166 PF00672 HAMP domain BD01_1166 PF02743 Cache domain BD01_1166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_1166 PF00672 HAMP domain BD01_1166 PF02743 Cache domain BD01_1167 PF03788 LrgA family BD01_1168 PF04172 LrgB-like family BD01_1184 PF01420 Type I restriction modification DNA specificity domain BD01_1188 PF05569 BlaR1 peptidase M56 BD01_1199 PF01934 Protein of unknown function DUF86 BD01_1200 PF03099 Biotin/lipoate A/B protein ligase family BD01_1203 PF07687 Peptidase dimerisation domain BD01_1203 PF01546 Peptidase family M20/M25/M40 BD01_1208 PF01523 Putative modulator of DNA gyrase BD01_1209 PF01523 Putative modulator of DNA gyrase BD01_1212 PF03437 BtpA family BD01_1214 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BD01_1214 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BD01_1214 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BD01_1214 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BD01_1219 PF01121 Dephospho-CoA kinase BD01_1222 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BD01_1222 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BD01_1223 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BD01_1223 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BD01_1224 PF08543 Phosphomethylpyrimidine kinase BD01_1224 PF10120 Thiamine-phosphate synthase BD01_1229 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD01_1229 PF01411 tRNA synthetases class II (A) BD01_1232 PF01871 AMMECR1 BD01_1232 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BD01_1236 PF00005 ABC transporter BD01_1237 PF01032 FecCD transport family BD01_1238 PF00583 Acetyltransferase (GNAT) family BD01_1242 PF00155 Aminotransferase class I and II BD01_1244 PF17864 RuvB AAA lid domain BD01_1244 PF05496 Holliday junction DNA helicase RuvB P-loop domain BD01_1244 PF05491 RuvB C-terminal winged helix domain BD01_1245 PF17864 RuvB AAA lid domain BD01_1245 PF05491 RuvB C-terminal winged helix domain BD01_1245 PF05496 Holliday junction DNA helicase RuvB P-loop domain BD01_1249 PF04055 Radical SAM superfamily BD01_1249 PF06463 Molybdenum Cofactor Synthesis C BD01_1254 PF00154 recA bacterial DNA recombination protein BD01_1258 PF14572 Phosphoribosyl synthetase-associated domain BD01_1258 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BD01_1266 PF01921 tRNA synthetases class I (K) BD01_1271 PF00083 Sugar (and other) transporter BD01_1273 PF01112 Asparaginase BD01_1275 PF04055 Radical SAM superfamily BD01_1278 PF07690 Major Facilitator Superfamily BD01_1279 PF06480 FtsH Extracellular BD01_1279 PF01434 Peptidase family M41 BD01_1279 PF00004 ATPase family associated with various cellular activities (AAA) BD01_1279 PF17862 AAA+ lid domain BD01_1281 PF00953 Glycosyl transferase family 4 BD01_1282 PF13419 Haloacid dehalogenase-like hydrolase BD01_1284 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BD01_1285 PF01435 Peptidase family M48 BD01_1292 PF03477 ATP cone domain BD01_1292 PF13597 Anaerobic ribonucleoside-triphosphate reductase BD01_1295 PF00118 TCP-1/cpn60 chaperonin family BD01_1296 PF00005 ABC transporter BD01_1305 PF00478 IMP dehydrogenase / GMP reductase domain BD01_1305 PF00571 CBS domain BD01_1308 PF00005 ABC transporter BD01_1311 PF02910 Fumarate reductase flavoprotein C-term BD01_1311 PF00890 FAD binding domain BD01_1314 PF02445 Quinolinate synthetase A protein BD01_1315 PF13635 Domain of unknown function (DUF4143) BD01_1315 PF13173 AAA domain BD01_1316 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BD01_1316 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BD01_1323 PF01171 PP-loop family BD01_1325 PF13180 PDZ domain BD01_1326 PF13439 Glycosyltransferase Family 4 BD01_1326 PF00534 Glycosyl transferases group 1 BD01_1328 PF13439 Glycosyltransferase Family 4 BD01_1328 PF00534 Glycosyl transferases group 1 BD01_1330 PF00534 Glycosyl transferases group 1 BD01_1330 PF13477 Glycosyl transferase 4-like BD01_1331 PF00483 Nucleotidyl transferase BD01_1333 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BD01_1333 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BD01_1333 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BD01_1336 PF02585 GlcNAc-PI de-N-acetylase BD01_1339 PF00232 Glycosyl hydrolase family 1 BD01_1340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BD01_1341 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1342 PF12911 N-terminal TM domain of oligopeptide transport permease C BD01_1342 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1343 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD01_1343 PF00005 ABC transporter BD01_1344 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD01_1344 PF00005 ABC transporter BD01_1345 PF01380 SIS domain BD01_1346 PF01301 Glycosyl hydrolases family 35 BD01_1347 PF01545 Cation efflux family BD01_1347 PF16916 Dimerisation domain of Zinc Transporter BD01_1348 PF00282 Pyridoxal-dependent decarboxylase conserved domain BD01_1349 PF00999 Sodium/hydrogen exchanger family BD01_1353 PF03065 Glycosyl hydrolase family 57 BD01_1353 PF09095 Domain of unknown function (DUF1926) BD01_1353 PF09094 Domain of unknown function (DUF1925) BD01_1355 PF01171 PP-loop family BD01_1359 PF00571 CBS domain BD01_1359 PF00478 IMP dehydrogenase / GMP reductase domain BD01_1360 PF00999 Sodium/hydrogen exchanger family BD01_1365 PF00672 HAMP domain BD01_1365 PF17202 Single cache domain 3 BD01_1365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_1367 PF01914 MarC family integral membrane protein BD01_1368 PF03129 Anticodon binding domain BD01_1368 PF13393 Histidyl-tRNA synthetase BD01_1378 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD01_1378 PF01411 tRNA synthetases class II (A) BD01_1378 PF02272 DHHA1 domain BD01_1382 PF01784 NIF3 (NGG1p interacting factor 3) BD01_1388 PF06745 KaiC BD01_1390 PF02675 S-adenosylmethionine decarboxylase BD01_1392 PF07549 SecD/SecF GG Motif BD01_1392 PF02355 Protein export membrane protein BD01_1393 PF02080 TrkA-C domain BD01_1393 PF02254 TrkA-N domain BD01_1395 PF01496 V-type ATPase 116kDa subunit family BD01_1397 PF01991 ATP synthase (E/31 kDa) subunit BD01_1400 PF02874 ATP synthase alpha/beta family, beta-barrel domain BD01_1400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD01_1400 PF16886 ATPsynthase alpha/beta subunit N-term extension BD01_1401 PF02874 ATP synthase alpha/beta family, beta-barrel domain BD01_1401 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BD01_1402 PF01813 ATP synthase subunit D BD01_1403 PF01613 Flavin reductase like domain BD01_1403 PF00258 Flavodoxin BD01_1404 PF00672 HAMP domain BD01_1404 PF05227 CHASE3 domain BD01_1404 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_1405 PF02272 DHHA1 domain BD01_1405 PF01411 tRNA synthetases class II (A) BD01_1405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BD01_1407 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1409 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1412 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1415 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BD01_1416 PF01979 Amidohydrolase family BD01_1418 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1419 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1419 PF12911 N-terminal TM domain of oligopeptide transport permease C BD01_1420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD01_1420 PF00005 ABC transporter BD01_1421 PF00005 ABC transporter BD01_1421 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BD01_1423 PF02540 NAD synthase BD01_1425 PF03951 Glutamine synthetase, beta-Grasp domain BD01_1425 PF00120 Glutamine synthetase, catalytic domain BD01_1432 PF06745 KaiC BD01_1436 PF17785 PUA-like domain BD01_1436 PF10672 S-adenosylmethionine-dependent methyltransferase BD01_1438 PF01546 Peptidase family M20/M25/M40 BD01_1438 PF07687 Peptidase dimerisation domain BD01_1439 PF12706 Beta-lactamase superfamily domain BD01_1439 PF00753 Metallo-beta-lactamase superfamily BD01_1440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BD01_1440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BD01_1440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BD01_1440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BD01_1442 PF11495 Archaeal transcriptional regulator TrmB BD01_1442 PF01978 Sugar-specific transcriptional regulator TrmB BD01_1443 PF00534 Glycosyl transferases group 1 BD01_1443 PF08323 Starch synthase catalytic domain BD01_1445 PF06968 Biotin and Thiamin Synthesis associated domain BD01_1445 PF04055 Radical SAM superfamily BD01_1450 PF01850 PIN domain BD01_1452 PF00133 tRNA synthetases class I (I, L, M and V) BD01_1452 PF08264 Anticodon-binding domain of tRNA BD01_1453 PF01931 Protein of unknown function DUF84 BD01_1455 PF13175 AAA ATPase domain BD01_1459 PF00892 EamA-like transporter family BD01_1464 PF13173 AAA domain BD01_1464 PF13635 Domain of unknown function (DUF4143) BD01_1466 PF00156 Phosphoribosyl transferase domain BD01_1469 PF00317 Ribonucleotide reductase, all-alpha domain BD01_1469 PF02867 Ribonucleotide reductase, barrel domain BD01_1469 PF03477 ATP cone domain BD01_1471 PF13344 Haloacid dehalogenase-like hydrolase BD01_1478 PF07726 ATPase family associated with various cellular activities (AAA) BD01_1478 PF17863 AAA lid domain BD01_1481 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BD01_1481 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BD01_1481 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BD01_1482 PF00483 Nucleotidyl transferase BD01_1484 PF00483 Nucleotidyl transferase BD01_1485 PF16363 GDP-mannose 4,6 dehydratase BD01_1486 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BD01_1487 PF04321 RmlD substrate binding domain BD01_1488 PF16363 GDP-mannose 4,6 dehydratase BD01_1489 PF01943 Polysaccharide biosynthesis protein BD01_1491 PF00534 Glycosyl transferases group 1 BD01_1491 PF13439 Glycosyltransferase Family 4 BD01_1492 PF00534 Glycosyl transferases group 1 BD01_1493 PF00535 Glycosyl transferase family 2 BD01_1504 PF00719 Inorganic pyrophosphatase BD01_1505 PF00575 S1 RNA binding domain BD01_1510 PF00082 Subtilase family BD01_1510 PF05922 Peptidase inhibitor I9 BD01_1511 PF13847 Methyltransferase domain BD01_1511 PF17827 PrmC N-terminal domain BD01_1525 PF01914 MarC family integral membrane protein BD01_1528 PF01965 DJ-1/PfpI family BD01_1529 PF01037 Lrp/AsnC ligand binding domain BD01_1530 PF01926 50S ribosome-binding GTPase BD01_1530 PF01018 GTP1/OBG BD01_1530 PF09269 Domain of unknown function (DUF1967) BD01_1533 PF00474 Sodium:solute symporter family BD01_1534 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1534 PF01571 Aminomethyltransferase folate-binding domain BD01_1534 PF08669 Glycine cleavage T-protein C-terminal barrel domain BD01_1534 PF17806 Sarcosine oxidase A3 domain BD01_1535 PF01266 FAD dependent oxidoreductase BD01_1536 PF07690 Major Facilitator Superfamily BD01_1537 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family BD01_1539 PF04324 BFD-like [2Fe-2S] binding domain BD01_1539 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BD01_1539 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BD01_1539 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1539 PF18267 Rubredoxin NAD+ reductase C-terminal domain BD01_1545 PF01266 FAD dependent oxidoreductase BD01_1549 PF01571 Aminomethyltransferase folate-binding domain BD01_1549 PF08669 Glycine cleavage T-protein C-terminal barrel domain BD01_1549 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1549 PF17806 Sarcosine oxidase A3 domain BD01_1551 PF00291 Pyridoxal-phosphate dependent enzyme BD01_1552 PF01180 Dihydroorotate dehydrogenase BD01_1555 PF06508 Queuosine biosynthesis protein QueC BD01_1559 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BD01_1559 PF12557 Cob(I)alamin adenosyltransferase N terminal BD01_1561 PF00596 Class II Aldolase and Adducin N-terminal domain BD01_1564 PF13404 AsnC-type helix-turn-helix domain BD01_1564 PF01037 Lrp/AsnC ligand binding domain BD01_1565 PF05958 tRNA (Uracil-5-)-methyltransferase BD01_1565 PF01938 TRAM domain BD01_1568 PF00156 Phosphoribosyl transferase domain BD01_1570 PF04679 ATP dependent DNA ligase C terminal region BD01_1570 PF01068 ATP dependent DNA ligase domain BD01_1570 PF04675 DNA ligase N terminus BD01_1575 PF00005 ABC transporter BD01_1577 PF13186 Iron-sulfur cluster-binding domain BD01_1577 PF04055 Radical SAM superfamily BD01_1579 PF03553 Na+/H+ antiporter family BD01_1580 PF03167 Uracil DNA glycosylase superfamily BD01_1582 PF06463 Molybdenum Cofactor Synthesis C BD01_1582 PF04055 Radical SAM superfamily BD01_1584 PF02743 Cache domain BD01_1584 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BD01_1584 PF00672 HAMP domain BD01_1594 PF04199 Putative cyclase BD01_1595 PF05221 S-adenosyl-L-homocysteine hydrolase BD01_1595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BD01_1597 PF01882 Protein of unknown function DUF58 BD01_1600 PF17863 AAA lid domain BD01_1600 PF07726 ATPase family associated with various cellular activities (AAA) BD01_1601 PF01980 tRNA-methyltransferase O BD01_1601 PF18389 TrmO C-terminal domain BD01_1602 PF08402 TOBE domain BD01_1602 PF00005 ABC transporter BD01_1603 PF00528 Binding-protein-dependent transport system inner membrane component BD01_1607 PF01926 50S ribosome-binding GTPase BD01_1607 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BD01_1613 PF01169 Uncharacterized protein family UPF0016 BD01_1617 PF12327 FtsZ family, C-terminal domain BD01_1617 PF00091 Tubulin/FtsZ family, GTPase domain BD01_1618 PF13614 AAA domain BD01_1620 PF00294 pfkB family carbohydrate kinase BD01_1620 PF01467 Cytidylyltransferase-like BD01_1622 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BD01_1626 PF01066 CDP-alcohol phosphatidyltransferase BD01_1626 PF00483 Nucleotidyl transferase BD01_1631 PF00005 ABC transporter BD01_1634 PF00293 NUDIX domain BD01_1634 PF13344 Haloacid dehalogenase-like hydrolase BD01_1640 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BD01_1640 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BD01_1641 PF00265 Thymidine kinase BD01_1642 PF00291 Pyridoxal-phosphate dependent enzyme BD01_1646 PF03673 Uncharacterised protein family (UPF0128) BD01_1647 PF00535 Glycosyl transferase family 2 BD01_1648 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BD01_1648 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BD01_1649 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BD01_1649 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BD01_1650 PF13660 Domain of unknown function (DUF4147) BD01_1650 PF05161 MOFRL family BD01_1659 PF13380 CoA binding domain BD01_1666 PF01381 Helix-turn-helix BD01_1667 PF00005 ABC transporter BD01_1674 PF02535 ZIP Zinc transporter BD01_1676 PF02151 UvrB/uvrC motif BD01_1676 PF01541 GIY-YIG catalytic domain BD01_1676 PF08459 UvrC Helix-hairpin-helix N-terminal BD01_1680 PF08704 tRNA methyltransferase complex GCD14 subunit BD01_1682 PF00970 Oxidoreductase FAD-binding domain BD01_1682 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BD01_1682 PF00175 Oxidoreductase NAD-binding domain BD01_1683 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BD01_1683 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1683 PF13247 4Fe-4S dicluster domain BD01_1686 PF01597 Glycine cleavage H-protein BD01_1687 PF01899 Na+/H+ ion antiporter subunit BD01_1688 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BD01_1694 PF00361 Proton-conducting membrane transporter BD01_1700 PF17284 Spermidine synthase tetramerisation domain BD01_1707 PF00474 Sodium:solute symporter family BD01_1714 PF00850 Histone deacetylase domain BD01_1721 PF12102 Domain of unknown function (DUF3578) BD01_1721 PF07728 AAA domain (dynein-related subfamily) BD01_1729 PF00108 Thiolase, N-terminal domain BD01_1729 PF02803 Thiolase, C-terminal domain BD01_1730 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BD01_1730 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BD01_1733 PF01008 Initiation factor 2 subunit family BD01_1734 PF00155 Aminotransferase class I and II BD01_1735 PF07722 Peptidase C26 BD01_1736 PF04055 Radical SAM superfamily BD01_1737 PF02566 OsmC-like protein BD01_1738 PF00117 Glutamine amidotransferase class-I BD01_1738 PF02540 NAD synthase BD01_1738 PF00958 GMP synthase C terminal domain BD01_1741 PF00117 Glutamine amidotransferase class-I BD01_1741 PF00958 GMP synthase C terminal domain BD01_1743 PF00586 AIR synthase related protein, N-terminal domain BD01_1743 PF02769 AIR synthase related protein, C-terminal domain BD01_1743 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BD01_1748 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BD01_1748 PF02843 Phosphoribosylglycinamide synthetase, C domain BD01_1748 PF02844 Phosphoribosylglycinamide synthetase, N domain BD01_1751 PF00731 AIR carboxylase BD01_1752 PF02222 ATP-grasp domain BD01_1753 PF02769 AIR synthase related protein, C-terminal domain BD01_1753 PF00586 AIR synthase related protein, N-terminal domain BD01_1756 PF01259 SAICAR synthetase BD01_1757 PF00156 Phosphoribosyl transferase domain BD01_1760 PF00384 Molybdopterin oxidoreductase BD01_1760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD01_1760 PF01568 Molydopterin dinucleotide binding domain BD01_1761 PF01174 SNO glutamine amidotransferase family BD01_1762 PF01680 SOR/SNZ family BD01_1766 PF01470 Pyroglutamyl peptidase BD01_1770 PF04255 Protein of unknown function (DUF433) BD01_1771 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BD01_1774 PF00294 pfkB family carbohydrate kinase BD01_1777 PF17863 AAA lid domain BD01_1777 PF07726 ATPase family associated with various cellular activities (AAA) BD01_1782 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BD01_1785 PF00437 Type II/IV secretion system protein BD01_1789 PF01926 50S ribosome-binding GTPase BD01_1789 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BD01_1790 PF02926 THUMP domain BD01_1790 PF01170 Putative RNA methylase family UPF0020 BD01_1792 PF01557 Fumarylacetoacetate (FAA) hydrolase family BD01_1794 PF00579 tRNA synthetases class I (W and Y) BD01_1799 PF12706 Beta-lactamase superfamily domain BD01_1801 PF01022 Bacterial regulatory protein, arsR family BD01_1805 PF01256 Carbohydrate kinase BD01_1805 PF03853 YjeF-related protein N-terminus BD01_1808 PF12002 MgsA AAA+ ATPase C terminal BD01_1808 PF01661 Macro domain BD01_1808 PF16193 AAA C-terminal domain BD01_1808 PF05496 Holliday junction DNA helicase RuvB P-loop domain BD01_1810 PF01979 Amidohydrolase family BD01_1812 PF01048 Phosphorylase superfamily BD01_1816 PF01939 Endonuclease NucS BD01_1822 PF00027 Cyclic nucleotide-binding domain BD01_1822 PF00520 Ion transport protein BD01_1840 PF00814 Glycoprotease family BD01_1842 PF01513 ATP-NAD kinase BD01_1844 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BD01_1844 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BD01_1844 PF01189 16S rRNA methyltransferase RsmB/F BD01_1854 PF00899 ThiF family BD01_1856 PF02391 MoaE protein BD01_1860 PF01725 Ham1 family BD01_1861 PF01037 Lrp/AsnC ligand binding domain BD01_1861 PF13404 AsnC-type helix-turn-helix domain BD01_1864 PF00113 Enolase, C-terminal TIM barrel domain BD01_1864 PF03952 Enolase, N-terminal domain BD01_1866 PF01791 DeoC/LacD family aldolase BD01_1869 PF00202 Aminotransferase class-III BD01_1872 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1881 PF00146 NADH dehydrogenase BD01_1882 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BD01_1882 PF00374 Nickel-dependent hydrogenase BD01_1883 PF00374 Nickel-dependent hydrogenase BD01_1883 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BD01_1883 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BD01_1884 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BD01_1886 PF00361 Proton-conducting membrane transporter BD01_1891 PF03334 Na+/H+ antiporter subunit BD01_1892 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BD01_1894 PF12800 4Fe-4S binding domain BD01_1894 PF13247 4Fe-4S dicluster domain BD01_1895 PF13247 4Fe-4S dicluster domain BD01_1895 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BD01_1895 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1896 PF01226 Formate/nitrite transporter BD01_1898 PF13247 4Fe-4S dicluster domain BD01_1898 PF12800 4Fe-4S binding domain BD01_1899 PF00384 Molybdopterin oxidoreductase BD01_1899 PF01568 Molydopterin dinucleotide binding domain BD01_1899 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BD01_1902 PF00374 Nickel-dependent hydrogenase BD01_1903 PF05958 tRNA (Uracil-5-)-methyltransferase BD01_1903 PF01938 TRAM domain BD01_1904 PF04055 Radical SAM superfamily BD01_1904 PF01938 TRAM domain BD01_1904 PF00919 Uncharacterized protein family UPF0004 BD01_1909 PF01384 Phosphate transporter family BD01_1914 PF00326 Prolyl oligopeptidase family BD01_1914 PF07676 WD40-like Beta Propeller Repeat BD01_1915 PF01555 DNA methylase BD01_1916 PF06745 KaiC BD01_1922 PF00390 Malic enzyme, N-terminal domain BD01_1922 PF03949 Malic enzyme, NAD binding domain BD01_1923 PF05683 Fumarase C-terminus BD01_1923 PF05681 Fumarate hydratase (Fumerase) BD01_1924 PF05681 Fumarate hydratase (Fumerase) BD01_1924 PF05683 Fumarase C-terminus BD01_1925 PF13635 Domain of unknown function (DUF4143) BD01_1925 PF13173 AAA domain BD01_1926 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BD01_1926 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BD01_1930 PF00588 SpoU rRNA Methylase family BD01_1934 PF00999 Sodium/hydrogen exchanger family BD01_1939 PF01926 50S ribosome-binding GTPase BD01_1939 PF13167 GTP-binding GTPase N-terminal BD01_1939 PF16360 GTP-binding GTPase Middle Region BD01_1940 PF01384 Phosphate transporter family BD01_1943 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BD01_1943 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BD01_1944 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD01_1946 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BD01_1946 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BD01_1947 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BD01_1948 PF10609 NUBPL iron-transfer P-loop NTPase BD01_1953 PF00294 pfkB family carbohydrate kinase BD01_1955 PF00708 Acylphosphatase BD01_1957 PF01949 Protein of unknown function DUF99 BD01_1958 PF00582 Universal stress protein family BD01_1959 PF08669 Glycine cleavage T-protein C-terminal barrel domain BD01_1959 PF01571 Aminomethyltransferase folate-binding domain BD01_1963 PF01950 Fructose-1,6-bisphosphatase BD01_1966 PF00696 Amino acid kinase family BD01_1975 PF01209 ubiE/COQ5 methyltransferase family BD01_1979 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BD01_1979 PF00970 Oxidoreductase FAD-binding domain BD01_1979 PF00175 Oxidoreductase NAD-binding domain BD01_1980 PF13247 4Fe-4S dicluster domain BD01_1980 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_1980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BD01_1985 PF00440 Bacterial regulatory proteins, tetR family BD01_1989 PF01883 Iron-sulfur cluster assembly protein BD01_1992 PF01861 Branched-chain polyamine synthase A C-terminal domain BD01_1994 PF00082 Subtilase family BD01_1995 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 BD01_1995 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain BD01_1996 PF04055 Radical SAM superfamily BD01_1996 PF13186 Iron-sulfur cluster-binding domain BD01_2000 PF00535 Glycosyl transferase family 2 BD01_2000 PF00795 Carbon-nitrogen hydrolase BD01_2001 PF06745 KaiC BD01_2003 PF02225 PA domain BD01_2003 PF04389 Peptidase family M28 BD01_2007 PF00795 Carbon-nitrogen hydrolase BD01_2017 PF01906 Putative heavy-metal-binding BD01_2023 PF01189 16S rRNA methyltransferase RsmB/F BD01_2023 PF01029 NusB family BD01_2025 PF00924 Mechanosensitive ion channel BD01_2030 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system BD01_2033 PF03144 Elongation factor Tu domain 2 BD01_2033 PF09105 Elongation factor SelB, winged helix BD01_2033 PF09107 Elongation factor SelB, winged helix BD01_2033 PF00009 Elongation factor Tu GTP binding domain BD01_2033 PF09106 Elongation factor SelB, winged helix BD01_2037 PF01926 50S ribosome-binding GTPase BD01_2037 PF07650 KH domain BD01_2038 PF00717 Peptidase S24-like BD01_2038 PF12802 MarR family BD01_2040 PF01040 UbiA prenyltransferase family BD01_2055 PF00266 Aminotransferase class-V BD01_2058 PF01336 OB-fold nucleic acid binding domain BD01_2058 PF00152 tRNA synthetases class II (D, K and N) BD01_2059 PF02347 Glycine cleavage system P-protein BD01_2062 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BD01_2062 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BD01_2062 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_2063 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BD01_2063 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BD01_2063 PF00037 4Fe-4S binding domain BD01_2066 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BD01_2068 PF00374 Nickel-dependent hydrogenase BD01_2074 PF01137 RNA 3'-terminal phosphate cyclase BD01_2074 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain BD01_2079 PF14528 LAGLIDADG-like domain BD01_2079 PF00521 DNA gyrase/topoisomerase IV, subunit A BD01_2081 PF01039 Carboxyl transferase domain BD01_2083 PF00364 Biotin-requiring enzyme BD01_2083 PF02436 Conserved carboxylase domain BD01_2083 PF00682 HMGL-like BD01_2084 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BD01_2085 PF01769 Divalent cation transporter BD01_2085 PF00571 CBS domain BD01_2085 PF03448 MgtE intracellular N domain BD01_2086 PF03447 Homoserine dehydrogenase, NAD binding domain BD01_2086 PF00742 Homoserine dehydrogenase BD01_2086 PF01842 ACT domain BD01_2094 PF00013 KH domain BD01_2094 PF01138 3' exoribonuclease family, domain 1 BD01_2094 PF03725 3' exoribonuclease family, domain 2 BD01_2094 PF00575 S1 RNA binding domain BD01_2095 PF01138 3' exoribonuclease family, domain 1 BD01_2095 PF00575 S1 RNA binding domain BD01_2095 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BD01_2095 PF03725 3' exoribonuclease family, domain 2 BD01_2095 PF00013 KH domain BD01_2096 PF01138 3' exoribonuclease family, domain 1 BD01_2096 PF00013 KH domain BD01_2096 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BD01_2096 PF00575 S1 RNA binding domain BD01_2096 PF03725 3' exoribonuclease family, domain 2 BD01_2098 PF00227 Proteasome subunit BD01_2100 PF01230 HIT domain BD01_2111 PF00857 Isochorismatase family BD01_2113 PF01008 Initiation factor 2 subunit family BD01_2113 PF03061 Thioesterase superfamily BD01_2114 PF01978 Sugar-specific transcriptional regulator TrmB BD01_2114 PF11495 Archaeal transcriptional regulator TrmB BD01_2115 PF00005 ABC transporter BD01_2117 PF03551 Transcriptional regulator PadR-like family BD01_2119 PF17763 Glutaminase/Asparaginase C-terminal domain BD01_2119 PF00710 Asparaginase, N-terminal BD01_2123 PF01138 3' exoribonuclease family, domain 1 BD01_2123 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BD01_2123 PF03725 3' exoribonuclease family, domain 2 BD01_2123 PF00013 KH domain BD01_2123 PF00575 S1 RNA binding domain BD01_2125 PF07690 Major Facilitator Superfamily BD01_2130 PF03161 LAGLIDADG DNA endonuclease family BD01_2130 PF00154 recA bacterial DNA recombination protein BD01_2133 PF01029 NusB family BD01_2133 PF01189 16S rRNA methyltransferase RsmB/F BD01_2134 PF01871 AMMECR1 BD01_2135 PF01910 Thiamine-binding protein BD01_2140 PF03576 Peptidase family S58 BD01_2141 PF00528 Binding-protein-dependent transport system inner membrane component BD01_2142 PF08402 TOBE domain BD01_2142 PF00005 ABC transporter BD01_2143 PF00860 Permease family BD01_2148 PF00297 Ribosomal protein L3 BD01_2150 PF00276 Ribosomal protein L23 BD01_2151 PF03947 Ribosomal Proteins L2, C-terminal domain BD01_2151 PF00181 Ribosomal Proteins L2, RNA binding domain BD01_2152 PF00203 Ribosomal protein S19 BD01_2153 PF00237 Ribosomal protein L22p/L17e BD01_2154 PF00189 Ribosomal protein S3, C-terminal domain BD01_2154 PF07650 KH domain BD01_2155 PF00831 Ribosomal L29 protein BD01_2156 PF01253 Translation initiation factor SUI1 BD01_2158 PF00366 Ribosomal protein S17 BD01_2159 PF00238 Ribosomal protein L14p/L23e BD01_2160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BD01_2160 PF00467 KOW motif BD01_2162 PF00281 Ribosomal protein L5 BD01_2162 PF00673 ribosomal L5P family C-terminus BD01_2164 PF00410 Ribosomal protein S8 BD01_2165 PF00347 Ribosomal protein L6 BD01_2168 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BD01_2169 PF00333 Ribosomal protein S5, N-terminal domain BD01_2169 PF03719 Ribosomal protein S5, C-terminal domain BD01_2170 PF00327 Ribosomal protein L30p/L7e BD01_2171 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BD01_2178 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system BD01_2180 PF01509 TruB family pseudouridylate synthase (N terminal domain) BD01_2180 PF16198 tRNA pseudouridylate synthase B C-terminal domain BD01_2183 PF05175 Methyltransferase small domain BD01_2183 PF08468 Methyltransferase small domain N-terminal BD01_2185 PF00416 Ribosomal protein S13/S18 BD01_2186 PF01479 S4 domain BD01_2186 PF00163 Ribosomal protein S4/S9 N-terminal domain BD01_2187 PF00411 Ribosomal protein S11 BD01_2188 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BD01_2188 PF01000 RNA polymerase Rpb3/RpoA insert domain BD01_2188 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BD01_2191 PF00572 Ribosomal protein L13 BD01_2192 PF00380 Ribosomal protein S9/S16 BD01_2196 PF03952 Enolase, N-terminal domain BD01_2196 PF00113 Enolase, C-terminal TIM barrel domain BD01_2197 PF00318 Ribosomal protein S2 BD01_2200 PF03551 Transcriptional regulator PadR-like family BD01_2206 PF01037 Lrp/AsnC ligand binding domain BD01_2208 PF00156 Phosphoribosyl transferase domain BD01_2211 PF02978 Signal peptide binding domain BD01_2211 PF02881 SRP54-type protein, helical bundle domain BD01_2211 PF00448 SRP54-type protein, GTPase domain BD01_2216 PF01048 Phosphorylase superfamily BD01_2217 PF04324 BFD-like [2Fe-2S] binding domain BD01_2217 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BD01_2217 PF07992 Pyridine nucleotide-disulphide oxidoreductase BD01_2217 PF18267 Rubredoxin NAD+ reductase C-terminal domain BD01_2222 PF01048 Phosphorylase superfamily BD01_2223 PF00291 Pyridoxal-phosphate dependent enzyme BD01_2224 PF01875 Memo-like protein BD01_2226 PF10509 Galactokinase galactose-binding signature BD01_2226 PF08544 GHMP kinases C terminal BD01_2226 PF00288 GHMP kinases N terminal domain BD01_2229 PF01070 FMN-dependent dehydrogenase BD01_2231 PF17770 Ribonuclease J C-terminal domain BD01_2231 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BD01_2231 PF00753 Metallo-beta-lactamase superfamily BD01_2236 PF08264 Anticodon-binding domain of tRNA BD01_2236 PF00133 tRNA synthetases class I (I, L, M and V) BD01_2236 PF13603 Leucyl-tRNA synthetase, Domain 2 BD01_2236 PF09334 tRNA synthetases class I (M) BD01_2241 PF00005 ABC transporter BD01_2242 PF01321 Creatinase/Prolidase N-terminal domain BD01_2242 PF00557 Metallopeptidase family M24 BD01_2251 PF00291 Pyridoxal-phosphate dependent enzyme BD01_2256 PF01402 Ribbon-helix-helix protein, copG family BD01_2256 PF08753 NikR C terminal nickel binding domain BD01_2259 PF09210 Domain of unknown function (DUF1957) BD01_2259 PF03065 Glycosyl hydrolase family 57 BD01_2262 PF00209 Sodium:neurotransmitter symporter family BD01_2263 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BD01_2263 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BD01_2265 PF00227 Proteasome subunit BD01_2266 PF00753 Metallo-beta-lactamase superfamily BD01_2266 PF10996 Beta-Casp domain BD01_2266 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BD01_2268 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)