A3L09_00015	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A3L09_00015	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A3L09_00015	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A3L09_00140	PWY-1042	glycolysis IV (plant cytosol)
A3L09_00140	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_00140	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_00140	PWY-6891	thiazole biosynthesis II (Bacillus)
A3L09_00140	PWY-6892	thiazole biosynthesis I (E. coli)
A3L09_00140	PWY-7003	glycerol degradation to butanol
A3L09_00160	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A3L09_00160	PWY-5723	Rubisco shunt
A3L09_00200	PWY-7533	gliotoxin biosynthesis
A3L09_00290	PWY-1042	glycolysis IV (plant cytosol)
A3L09_00290	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A3L09_00290	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_00290	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_00290	PWY-7385	1,3-propanediol biosynthesis (engineered)
A3L09_00320	PWY-101	photosynthesis light reactions
A3L09_00340	PWY-5381	pyridine nucleotide cycling (plants)
A3L09_00415	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L09_00485	PWY-5686	UMP biosynthesis
A3L09_00485	PWY-7790	A3L09_00485
A3L09_00485	PWY-7791	A3L09_00485
A3L09_00545	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A3L09_00545	PWY-5686	UMP biosynthesis
A3L09_00545	PWY-7790	A3L09_00545
A3L09_00545	PWY-7791	A3L09_00545
A3L09_00545	PWY-7796	A3L09_00545
A3L09_00550	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L09_00550	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_00595	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
A3L09_00655	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L09_00655	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A3L09_00655	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_00655	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_00655	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A3L09_00655	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L09_00655	PWY-7205	CMP phosphorylation
A3L09_00655	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L09_00655	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_00655	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_00655	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_00655	PWY-7224	purine deoxyribonucleosides salvage
A3L09_00655	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_00655	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A3L09_00705	PWY-7294	xylose degradation IV
A3L09_00705	PWY-7295	L-arabinose degradation IV
A3L09_00835	PWY-7980	A3L09_00835
A3L09_00840	PWY-7980	A3L09_00840
A3L09_00910	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L09_00955	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_00955	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_00955	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_01000	PWY-6823	molybdenum cofactor biosynthesis
A3L09_01000	PWY-7887	A3L09_01000
A3L09_01015	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
A3L09_01205	PWY-1042	glycolysis IV (plant cytosol)
A3L09_01205	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L09_01205	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L09_01205	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_01205	PWY-5723	Rubisco shunt
A3L09_01205	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_01205	PWY-6886	1-butanol autotrophic biosynthesis
A3L09_01205	PWY-6901	superpathway of glucose and xylose degradation
A3L09_01205	PWY-7003	glycerol degradation to butanol
A3L09_01205	PWY-7124	ethylene biosynthesis V (engineered)
A3L09_01205	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L09_01360	PWY-5372	carbon tetrachloride degradation II
A3L09_01360	PWY-6780	hydrogen production VI
A3L09_01360	PWY-7784	A3L09_01360
A3L09_01405	PWY-5839	menaquinol-7 biosynthesis
A3L09_01405	PWY-5844	menaquinol-9 biosynthesis
A3L09_01405	PWY-5849	menaquinol-6 biosynthesis
A3L09_01405	PWY-5890	menaquinol-10 biosynthesis
A3L09_01405	PWY-5891	menaquinol-11 biosynthesis
A3L09_01405	PWY-5892	menaquinol-12 biosynthesis
A3L09_01405	PWY-5895	menaquinol-13 biosynthesis
A3L09_01430	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
A3L09_01430	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
A3L09_01430	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
A3L09_01430	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
A3L09_01430	PWY-6978	plastoquinol-9 biosynthesis II
A3L09_01610	PWY-6938	NADH repair
A3L09_01635	PWY-5392	reductive TCA cycle II
A3L09_01635	PWY-5537	pyruvate fermentation to acetate V
A3L09_01635	PWY-5538	pyruvate fermentation to acetate VI
A3L09_01635	PWY-5690	TCA cycle II (plants and fungi)
A3L09_01635	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L09_01635	PWY-6728	methylaspartate cycle
A3L09_01635	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L09_01635	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L09_01735	PWY-7942	A3L09_01735
A3L09_01800	PWY-3801	sucrose degradation II (sucrose synthase)
A3L09_01800	PWY-6527	stachyose degradation
A3L09_01800	PWY-7238	sucrose biosynthesis II
A3L09_01800	PWY-7343	UDP-glucose biosynthesis
A3L09_01800	PWY-7817	A3L09_01800
A3L09_01805	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
A3L09_01805	PWY-7820	A3L09_01805
A3L09_01820	PWY-7560	methylerythritol phosphate pathway II
A3L09_01820	PWY-7815	A3L09_01820
A3L09_01820	PWY-7816	A3L09_01820
A3L09_01820	PWY-7818	A3L09_01820
A3L09_01820	PWY-7981	A3L09_01820
A3L09_01855	PWY-5155	&beta;-alanine biosynthesis III
A3L09_01895	PWY-6349	CDP-archaeol biosynthesis
A3L09_01940	PWY-6700	queuosine biosynthesis
A3L09_02040	PWY-6749	CMP-legionaminate biosynthesis I
A3L09_02080	PWY-5686	UMP biosynthesis
A3L09_02080	PWY-7790	A3L09_02080
A3L09_02080	PWY-7791	A3L09_02080
A3L09_02085	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A3L09_02085	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A3L09_02085	PWY-6897	thiamin salvage II
A3L09_02085	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A3L09_02085	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A3L09_02085	PWY-7356	thiamin salvage IV (yeast)
A3L09_02085	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A3L09_02145	PWY-6823	molybdenum cofactor biosynthesis
A3L09_02180	PWY-6689	tRNA splicing
A3L09_02180	PWY-7803	A3L09_02180
A3L09_02250	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A3L09_02260	PWY-6148	tetrahydromethanopterin biosynthesis
A3L09_02360	PWY-4381	fatty acid biosynthesis initiation I
A3L09_02360	PWY-5743	3-hydroxypropanoate cycle
A3L09_02360	PWY-5744	glyoxylate assimilation
A3L09_02360	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A3L09_02360	PWY-6722	candicidin biosynthesis
A3L09_02465	PWY-6832	2-aminoethylphosphonate degradation II
A3L09_02660	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_02675	PWY-7205	CMP phosphorylation
A3L09_02765	PWY-1042	glycolysis IV (plant cytosol)
A3L09_02765	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L09_02765	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L09_02765	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_02765	PWY-5723	Rubisco shunt
A3L09_02765	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_02765	PWY-6886	1-butanol autotrophic biosynthesis
A3L09_02765	PWY-6901	superpathway of glucose and xylose degradation
A3L09_02765	PWY-7003	glycerol degradation to butanol
A3L09_02765	PWY-7124	ethylene biosynthesis V (engineered)
A3L09_02765	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L09_02865	PWY-6823	molybdenum cofactor biosynthesis
A3L09_02875	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
A3L09_02940	PWY-5741	ethylmalonyl-CoA pathway
A3L09_02940	PWY-5743	3-hydroxypropanoate cycle
A3L09_02940	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A3L09_02940	PWY-6728	methylaspartate cycle
A3L09_02940	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L09_02940	PWY-7854	A3L09_02940
A3L09_03060	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L09_03060	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_03060	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_03060	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A3L09_03060	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L09_03060	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L09_03065	PWY-6749	CMP-legionaminate biosynthesis I
A3L09_03070	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A3L09_03075	PWY-5941	glycogen degradation II (eukaryotic)
A3L09_03075	PWY-6731	starch degradation III
A3L09_03075	PWY-6737	starch degradation V
A3L09_03075	PWY-7238	sucrose biosynthesis II
A3L09_03085	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A3L09_03120	PWY-5532	adenosine nucleotides degradation IV
A3L09_03160	PWY-7799	A3L09_03160
A3L09_03160	PWY-7800	A3L09_03160
A3L09_03220	PWY-6167	flavin biosynthesis II (archaea)
A3L09_03220	PWY-6168	flavin biosynthesis III (fungi)
A3L09_03230	PWY-5686	UMP biosynthesis
A3L09_03230	PWY-7790	A3L09_03230
A3L09_03230	PWY-7791	A3L09_03230
A3L09_03240	PWY-2301	<i>myo</i>-inositol biosynthesis
A3L09_03240	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
A3L09_03240	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
A3L09_03240	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
A3L09_03240	PWY-6664	di-myo-inositol phosphate biosynthesis
A3L09_03250	PWY-6482	diphthamide biosynthesis (archaea)
A3L09_03250	PWY-7546	diphthamide biosynthesis (eukaryotes)
A3L09_03425	PWY-5964	guanylyl molybdenum cofactor biosynthesis
A3L09_03425	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
A3L09_03545	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
A3L09_03545	PWY-6174	mevalonate pathway II (archaea)
A3L09_03545	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
A3L09_03545	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
A3L09_03545	PWY-7102	bisabolene biosynthesis
A3L09_03545	PWY-7391	isoprene biosynthesis II (engineered)
A3L09_03545	PWY-7524	mevalonate pathway III (archaea)
A3L09_03545	PWY-7560	methylerythritol phosphate pathway II
A3L09_03545	PWY-922	mevalonate pathway I
A3L09_03620	PWY-6823	molybdenum cofactor biosynthesis
A3L09_03670	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A3L09_03670	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A3L09_03735	PWY-4261	glycerol degradation I
A3L09_03840	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
A3L09_03840	PWY-622	starch biosynthesis
A3L09_03840	PWY-7900	A3L09_03840
A3L09_03850	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A3L09_03850	PWY-6148	tetrahydromethanopterin biosynthesis
A3L09_03850	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A3L09_03850	PWY-6898	thiamin salvage III
A3L09_03850	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A3L09_03850	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A3L09_03850	PWY-7356	thiamin salvage IV (yeast)
A3L09_03850	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A3L09_03850	PWY-7852	A3L09_03850
A3L09_03850	PWY-7853	A3L09_03850
A3L09_04095	PWY-6349	CDP-archaeol biosynthesis
A3L09_04130	PWY-181	photorespiration
A3L09_04140	PWY-4041	&gamma;-glutamyl cycle
A3L09_04140	PWY-7942	A3L09_04140
A3L09_04145	PWY-4041	&gamma;-glutamyl cycle
A3L09_04145	PWY-7942	A3L09_04145
A3L09_04160	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_04230	PWY-5392	reductive TCA cycle II
A3L09_04230	PWY-5483	pyruvate fermentation to acetate III
A3L09_04230	PWY-5535	acetate formation from acetyl-CoA II
A3L09_04230	PWY-5537	pyruvate fermentation to acetate V
A3L09_04230	PWY-5538	pyruvate fermentation to acetate VI
A3L09_04230	PWY-5690	TCA cycle II (plants and fungi)
A3L09_04230	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L09_04230	PWY-6728	methylaspartate cycle
A3L09_04230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L09_04230	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L09_04260	PWY-6174	mevalonate pathway II (archaea)
A3L09_04260	PWY-7524	mevalonate pathway III (archaea)
A3L09_04270	PWY-6174	mevalonate pathway II (archaea)
A3L09_04270	PWY-7391	isoprene biosynthesis II (engineered)
A3L09_04270	PWY-922	mevalonate pathway I
A3L09_04295	PWY-4202	arsenate detoxification I (glutaredoxin)
A3L09_04295	PWY-5532	adenosine nucleotides degradation IV
A3L09_04295	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A3L09_04295	PWY-6608	guanosine nucleotides degradation III
A3L09_04295	PWY-6609	adenine and adenosine salvage III
A3L09_04295	PWY-6611	adenine and adenosine salvage V
A3L09_04295	PWY-6620	guanine and guanosine salvage
A3L09_04295	PWY-6627	salinosporamide A biosynthesis
A3L09_04295	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
A3L09_04295	PWY-7179	purine deoxyribonucleosides degradation I
A3L09_04295	PWY-7179-1	purine deoxyribonucleosides degradation
A3L09_04340	PWY-6654	phosphopantothenate biosynthesis III
A3L09_04380	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A3L09_04380	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A3L09_04385	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L09_04385	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_04385	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L09_04385	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L09_04405	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L09_04405	PWY-6124	inosine-5'-phosphate biosynthesis II
A3L09_04405	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_04405	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_04410	PWY-1042	glycolysis IV (plant cytosol)
A3L09_04410	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L09_04410	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_04410	PWY-5723	Rubisco shunt
A3L09_04410	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_04410	PWY-6886	1-butanol autotrophic biosynthesis
A3L09_04410	PWY-6901	superpathway of glucose and xylose degradation
A3L09_04410	PWY-7003	glycerol degradation to butanol
A3L09_04410	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L09_04410	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A3L09_04555	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
A3L09_04555	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
A3L09_04555	PWY-7717	A3L09_04555
A3L09_04555	PWY-7733	A3L09_04555
A3L09_04555	PWY-7734	A3L09_04555
A3L09_04555	PWY-7765	A3L09_04555
A3L09_04560	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A3L09_04740	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_04740	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_04775	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A3L09_04775	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A3L09_04775	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A3L09_04785	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
A3L09_04820	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L09_04885	PWY-6482	diphthamide biosynthesis (archaea)
A3L09_04885	PWY-7546	diphthamide biosynthesis (eukaryotes)
A3L09_04935	PWY-5796	malonate decarboxylase activation
A3L09_04985	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L09_05105	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A3L09_05105	PWY-5532	adenosine nucleotides degradation IV
A3L09_05105	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A3L09_05165	PWY-2941	L-lysine biosynthesis II
A3L09_05165	PWY-2942	L-lysine biosynthesis III
A3L09_05165	PWY-5097	L-lysine biosynthesis VI
A3L09_05275	PWY-6349	CDP-archaeol biosynthesis
A3L09_05400	PWY-6614	tetrahydrofolate biosynthesis
A3L09_05405	PWY-6148	tetrahydromethanopterin biosynthesis
A3L09_05430	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
A3L09_05430	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
A3L09_05430	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
A3L09_05430	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
A3L09_05430	PWY-6978	plastoquinol-9 biosynthesis II
A3L09_05465	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A3L09_05465	PWY-7177	UTP and CTP dephosphorylation II
A3L09_05465	PWY-7185	UTP and CTP dephosphorylation I
A3L09_05510	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A3L09_05510	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A3L09_05575	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_05670	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A3L09_05785	PWY-6823	molybdenum cofactor biosynthesis
A3L09_05850	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A3L09_05850	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A3L09_05875	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L09_05905	PWY-6349	CDP-archaeol biosynthesis
A3L09_06345	PWY-7991	A3L09_06345
A3L09_06350	PWY-6167	flavin biosynthesis II (archaea)
A3L09_06350	PWY-6168	flavin biosynthesis III (fungi)
A3L09_06350	PWY-7980	A3L09_06350
A3L09_06355	PWY-6167	flavin biosynthesis II (archaea)
A3L09_06355	PWY-6168	flavin biosynthesis III (fungi)
A3L09_06355	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A3L09_06355	PWY-7991	A3L09_06355
A3L09_06360	PWY-6167	flavin biosynthesis II (archaea)
A3L09_06360	PWY-6168	flavin biosynthesis III (fungi)
A3L09_06375	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L09_06375	PWY-6124	inosine-5'-phosphate biosynthesis II
A3L09_06375	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_06380	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_06385	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L09_06385	PWY-6124	inosine-5'-phosphate biosynthesis II
A3L09_06385	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_06390	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
A3L09_06400	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A3L09_06400	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A3L09_06400	PWY-6897	thiamin salvage II
A3L09_06400	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A3L09_06400	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A3L09_06400	PWY-6910	hydroxymethylpyrimidine salvage
A3L09_06400	PWY-7356	thiamin salvage IV (yeast)
A3L09_06400	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A3L09_06500	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A3L09_06500	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A3L09_06520	PWY-5381	pyridine nucleotide cycling (plants)
A3L09_06520	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A3L09_06520	PWY-6596	adenosine nucleotides degradation I
A3L09_06520	PWY-6606	guanosine nucleotides degradation II
A3L09_06520	PWY-6607	guanosine nucleotides degradation I
A3L09_06520	PWY-6608	guanosine nucleotides degradation III
A3L09_06520	PWY-7185	UTP and CTP dephosphorylation I
A3L09_06520	PWY-7821	A3L09_06520
A3L09_06655	PWY-5663	tetrahydrobiopterin biosynthesis I
A3L09_06655	PWY-5664	tetrahydrobiopterin biosynthesis II
A3L09_06655	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A3L09_06655	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L09_06655	PWY-6983	tetrahydrobiopterin biosynthesis III
A3L09_06655	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A3L09_06655	PWY-7852	A3L09_06655
A3L09_06775	PWY-7183	pyrimidine nucleobases salvage I
A3L09_06795	PWY-6349	CDP-archaeol biosynthesis
A3L09_06855	PWY-6749	CMP-legionaminate biosynthesis I
A3L09_06870	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_06930	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_07015	PWY-6823	molybdenum cofactor biosynthesis
A3L09_07235	PWY-7805	A3L09_07235
A3L09_07235	PWY-7807	A3L09_07235
A3L09_07270	PWY-6654	phosphopantothenate biosynthesis III
A3L09_07310	PWY-5532	adenosine nucleotides degradation IV
A3L09_07310	PWY-5723	Rubisco shunt
A3L09_07330	PWY-1042	glycolysis IV (plant cytosol)
A3L09_07330	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_07330	PWY-6886	1-butanol autotrophic biosynthesis
A3L09_07330	PWY-6901	superpathway of glucose and xylose degradation
A3L09_07330	PWY-7003	glycerol degradation to butanol
A3L09_07345	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L09_07345	PWY-181	photorespiration
A3L09_07345	PWY-2161	folate polyglutamylation
A3L09_07345	PWY-2201	folate transformations I
A3L09_07345	PWY-3661	glycine betaine degradation I
A3L09_07345	PWY-3661-1	glycine betaine degradation II (mammalian)
A3L09_07345	PWY-3841	folate transformations II
A3L09_07345	PWY-5497	purine nucleobases degradation II (anaerobic)
A3L09_07370	PWY-2941	L-lysine biosynthesis II
A3L09_07370	PWY-2942	L-lysine biosynthesis III
A3L09_07370	PWY-5097	L-lysine biosynthesis VI
A3L09_07375	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A3L09_07375	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A3L09_07380	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A3L09_07380	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A3L09_07385	PWY-7851	A3L09_07385
A3L09_07685	PWY-2941	L-lysine biosynthesis II
A3L09_07685	PWY-2942	L-lysine biosynthesis III
A3L09_07685	PWY-5097	L-lysine biosynthesis VI
A3L09_07825	PWY-6700	queuosine biosynthesis
A3L09_07825	PWY-6711	archaeosine biosynthesis
A3L09_07825	PWY-7923	A3L09_07825
A3L09_07845	PWY-6174	mevalonate pathway II (archaea)
A3L09_07845	PWY-7391	isoprene biosynthesis II (engineered)
A3L09_07845	PWY-7524	mevalonate pathway III (archaea)
A3L09_07845	PWY-922	mevalonate pathway I
A3L09_07860	PWY-7378	aminopropanol phosphate biosynthesis II
A3L09_07905	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L09_07915	PWY-4981	L-proline biosynthesis II (from arginine)
A3L09_07915	PWY-4984	urea cycle
A3L09_07915	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A3L09_07945	PWY-6829	tRNA methylation (yeast)
A3L09_08015	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L09_08045	PWY-7799	A3L09_08045
A3L09_08045	PWY-7800	A3L09_08045
A3L09_08110	PWY-3801	sucrose degradation II (sucrose synthase)
A3L09_08110	PWY-5054	sorbitol biosynthesis I
A3L09_08110	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
A3L09_08110	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A3L09_08110	PWY-5659	GDP-mannose biosynthesis
A3L09_08110	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_08110	PWY-621	sucrose degradation III (sucrose invertase)
A3L09_08110	PWY-622	starch biosynthesis
A3L09_08110	PWY-6981	chitin biosynthesis
A3L09_08110	PWY-6992	1,5-anhydrofructose degradation
A3L09_08110	PWY-7238	sucrose biosynthesis II
A3L09_08110	PWY-7347	sucrose biosynthesis III
A3L09_08110	PWY-7385	1,3-propanediol biosynthesis (engineered)
A3L09_08180	PWY-6167	flavin biosynthesis II (archaea)
A3L09_08255	PWY-101	photosynthesis light reactions
A3L09_08270	PWY-6829	tRNA methylation (yeast)
A3L09_08390	PWY-7799	A3L09_08390
A3L09_08390	PWY-7800	A3L09_08390
A3L09_08410	PWY-1042	glycolysis IV (plant cytosol)
A3L09_08410	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L09_08410	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L09_08410	PWY-5723	Rubisco shunt
A3L09_08410	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L09_08410	PWY-6886	1-butanol autotrophic biosynthesis
A3L09_08410	PWY-6901	superpathway of glucose and xylose degradation
A3L09_08410	PWY-7003	glycerol degradation to butanol
A3L09_08410	PWY-7124	ethylene biosynthesis V (engineered)
A3L09_08410	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L09_08445	PWY-5392	reductive TCA cycle II
A3L09_08445	PWY-5537	pyruvate fermentation to acetate V
A3L09_08445	PWY-5538	pyruvate fermentation to acetate VI
A3L09_08445	PWY-5690	TCA cycle II (plants and fungi)
A3L09_08445	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L09_08445	PWY-6728	methylaspartate cycle
A3L09_08445	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L09_08445	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L09_08475	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L09_08475	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_08490	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L09_08490	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L09_08490	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L09_08495	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_08505	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L09_08505	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L09_08505	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L09_08510	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L09_08510	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L09_08510	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L09_08520	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L09_08520	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L09_08520	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L09_08525	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_08535	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A3L09_08535	PWY-6596	adenosine nucleotides degradation I
A3L09_08535	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_08540	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_08555	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L09_08615	PWY-7285	methylwyosine biosynthesis
A3L09_08615	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L09_08750	PWY-6749	CMP-legionaminate biosynthesis I
A3L09_08755	PWY-5659	GDP-mannose biosynthesis
A3L09_08755	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
A3L09_08885	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A3L09_08910	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L09_08910	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L09_08910	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L09_08915	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L09_08915	PWY-6124	inosine-5'-phosphate biosynthesis II
A3L09_08915	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L09_08920	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L09_08920	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L09_08920	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L09_08920	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
A3L09_08935	PWY-1881	formate oxidation to CO<sub>2</sub>
A3L09_08935	PWY-5497	purine nucleobases degradation II (anaerobic)
A3L09_08935	PWY-6696	oxalate degradation III
A3L09_08935	PWY-7985	A3L09_08935
A3L09_08940	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
A3L09_08945	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
A3L09_08945	PWY-6891	thiazole biosynthesis II (Bacillus)
A3L09_08945	PWY-6892	thiazole biosynthesis I (E. coli)
A3L09_08970	PWY-6807	xyloglucan degradation II (exoglucanase)
A3L09_09035	PWY-622	starch biosynthesis
A3L09_09110	PWY-6749	CMP-legionaminate biosynthesis I
A3L09_09200	PWY-5316	nicotine biosynthesis
A3L09_09200	PWY-7342	superpathway of nicotine biosynthesis
A3L09_09215	PWY-5316	nicotine biosynthesis
A3L09_09215	PWY-7342	superpathway of nicotine biosynthesis
A3L09_09225	PWY-5316	nicotine biosynthesis
A3L09_09225	PWY-5381	pyridine nucleotide cycling (plants)
A3L09_09225	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
A3L09_09225	PWY-7342	superpathway of nicotine biosynthesis
A3L09_09235	PWY-6167	flavin biosynthesis II (archaea)
A3L09_09255	PWY-40	putrescine biosynthesis I
A3L09_09255	PWY-43	putrescine biosynthesis II
A3L09_09255	PWY-6305	putrescine biosynthesis IV
A3L09_09255	PWY-6834	spermidine biosynthesis III
A3L09_09270	PWY-7805	A3L09_09270
A3L09_09270	PWY-7807	A3L09_09270
A3L09_09275	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A3L09_09275	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
A3L09_09365	PWY-6825	phosphatidylcholine biosynthesis V
A3L09_09485	PWY-6482	diphthamide biosynthesis (archaea)
A3L09_09485	PWY-7546	diphthamide biosynthesis (eukaryotes)
A3L09_09510	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A3L09_09510	PWY-6269	adenosylcobalamin salvage from cobinamide II
A3L09_09510	PWY-7961	A3L09_09510
A3L09_09510	PWY-7963	A3L09_09510
A3L09_09510	PWY-7964	A3L09_09510
A3L09_09510	PWY-7965	A3L09_09510
A3L09_09510	PWY-7966	A3L09_09510
A3L09_09510	PWY-7967	A3L09_09510
A3L09_09510	PWY-7968	A3L09_09510
A3L09_09510	PWY-7969	A3L09_09510
A3L09_09510	PWY-7970	A3L09_09510
A3L09_09510	PWY-7975	A3L09_09510
A3L09_09535	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A3L09_09535	PWY-6269	adenosylcobalamin salvage from cobinamide II
A3L09_09535	PWY-7964	A3L09_09535
A3L09_09535	PWY-7965	A3L09_09535
A3L09_09535	PWY-7966	A3L09_09535
A3L09_09535	PWY-7967	A3L09_09535
A3L09_09535	PWY-7968	A3L09_09535
A3L09_09535	PWY-7969	A3L09_09535
A3L09_09535	PWY-7970	A3L09_09535
A3L09_09645	PWY-7199	pyrimidine deoxyribonucleosides salvage
A3L09_09695	PWY-7805	A3L09_09695
A3L09_09695	PWY-7807	A3L09_09695
A3L09_09915	PWY-4381	fatty acid biosynthesis initiation I
A3L09_10015	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A3L09_10015	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A3L09_10015	PWY-6896	thiamin salvage I
A3L09_10015	PWY-6897	thiamin salvage II
A3L09_10035	PWY-40	putrescine biosynthesis I
A3L09_10035	PWY-6305	putrescine biosynthesis IV
A3L09_10070	PWY-5392	reductive TCA cycle II
A3L09_10070	PWY-5537	pyruvate fermentation to acetate V
A3L09_10070	PWY-5538	pyruvate fermentation to acetate VI
A3L09_10070	PWY-5690	TCA cycle II (plants and fungi)
A3L09_10070	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L09_10070	PWY-6728	methylaspartate cycle
A3L09_10070	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L09_10070	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L09_10085	PWY-3221	dTDP-L-rhamnose biosynthesis II
A3L09_10085	PWY-6808	dTDP-D-forosamine biosynthesis
A3L09_10085	PWY-6942	dTDP-D-desosamine biosynthesis
A3L09_10085	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
A3L09_10085	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
A3L09_10085	PWY-6974	dTDP-L-olivose biosynthesis
A3L09_10085	PWY-6976	dTDP-L-mycarose biosynthesis
A3L09_10085	PWY-7104	dTDP-L-megosamine biosynthesis
A3L09_10085	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
A3L09_10085	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
A3L09_10085	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
A3L09_10085	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
A3L09_10085	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
A3L09_10085	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
A3L09_10085	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
A3L09_10085	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
A3L09_10085	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
A3L09_10085	PWY-7688	A3L09_10085
A3L09_10085	PWY-7814	A3L09_10085
A3L09_10130	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L09_10130	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_10130	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_10130	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A3L09_10130	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L09_10130	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L09_10145	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A3L09_10145	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A3L09_10145	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A3L09_10145	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A3L09_10220	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L09_10220	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_10220	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L09_10220	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L09_10220	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_10220	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L09_10220	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L09_10220	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A3L09_10390	PWY-381	nitrate reduction II (assimilatory)
A3L09_10390	PWY-5675	nitrate reduction V (assimilatory)
A3L09_10390	PWY-6549	L-glutamine biosynthesis III
A3L09_10390	PWY-6963	ammonia assimilation cycle I
A3L09_10390	PWY-6964	ammonia assimilation cycle II
A3L09_10430	PWY-5686	UMP biosynthesis
A3L09_10430	PWY-7790	A3L09_10430
A3L09_10430	PWY-7791	A3L09_10430
A3L09_10485	PWY-6654	phosphopantothenate biosynthesis III
A3L09_10530	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A3L09_10530	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A3L09_10535	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L09_10575	PWY-6834	spermidine biosynthesis III
