A3L11_00050	PWY-6749	CMP-legionaminate biosynthesis I
A3L11_00085	PWY-6558	heparan sulfate biosynthesis (late stages)
A3L11_00095	PWY-5686	UMP biosynthesis
A3L11_00095	PWY-7790	A3L11_00095
A3L11_00095	PWY-7791	A3L11_00095
A3L11_00100	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A3L11_00100	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A3L11_00100	PWY-6897	thiamin salvage II
A3L11_00100	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A3L11_00100	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A3L11_00100	PWY-7356	thiamin salvage IV (yeast)
A3L11_00100	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A3L11_00195	PWY-6689	tRNA splicing
A3L11_00195	PWY-7803	A3L11_00195
A3L11_00240	PWY-6823	molybdenum cofactor biosynthesis
A3L11_00335	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A3L11_00340	PWY-5497	purine nucleobases degradation II (anaerobic)
A3L11_00340	PWY-6606	guanosine nucleotides degradation II
A3L11_00340	PWY-6608	guanosine nucleotides degradation III
A3L11_00340	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A3L11_00405	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A3L11_00405	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A3L11_00405	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A3L11_00420	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L11_00465	PWY-101	photosynthesis light reactions
A3L11_00485	PWY-5381	pyridine nucleotide cycling (plants)
A3L11_00530	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L11_00630	PWY-3821	galactose degradation III
A3L11_00630	PWY-6317	galactose degradation I (Leloir pathway)
A3L11_00630	PWY-6527	stachyose degradation
A3L11_00695	PWY-5796	malonate decarboxylase activation
A3L11_00730	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A3L11_00730	PWY-5532	adenosine nucleotides degradation IV
A3L11_00730	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A3L11_00745	PWY-4381	fatty acid biosynthesis initiation I
A3L11_00820	PWY-5392	reductive TCA cycle II
A3L11_00820	PWY-5537	pyruvate fermentation to acetate V
A3L11_00820	PWY-5538	pyruvate fermentation to acetate VI
A3L11_00820	PWY-5690	TCA cycle II (plants and fungi)
A3L11_00820	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L11_00820	PWY-6728	methylaspartate cycle
A3L11_00820	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L11_00820	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L11_00865	PWY-40	putrescine biosynthesis I
A3L11_00865	PWY-43	putrescine biosynthesis II
A3L11_00865	PWY-6305	putrescine biosynthesis IV
A3L11_00865	PWY-6834	spermidine biosynthesis III
A3L11_00930	PWY-101	photosynthesis light reactions
A3L11_00945	PWY-6829	tRNA methylation (yeast)
A3L11_01085	PWY-6167	flavin biosynthesis II (archaea)
A3L11_01085	PWY-6168	flavin biosynthesis III (fungi)
A3L11_01095	PWY-5686	UMP biosynthesis
A3L11_01095	PWY-7790	A3L11_01095
A3L11_01095	PWY-7791	A3L11_01095
A3L11_01105	PWY-2301	<i>myo</i>-inositol biosynthesis
A3L11_01105	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
A3L11_01105	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
A3L11_01105	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
A3L11_01105	PWY-6664	di-myo-inositol phosphate biosynthesis
A3L11_01115	PWY-6482	diphthamide biosynthesis (archaea)
A3L11_01115	PWY-7546	diphthamide biosynthesis (eukaryotes)
A3L11_01180	PWY-5532	adenosine nucleotides degradation IV
A3L11_01180	PWY-5723	Rubisco shunt
A3L11_01185	PWY-7199	pyrimidine deoxyribonucleosides salvage
A3L11_01215	PWY-5941	glycogen degradation II (eukaryotic)
A3L11_01215	PWY-6724	starch degradation II
A3L11_01215	PWY-6737	starch degradation V
A3L11_01215	PWY-7238	sucrose biosynthesis II
A3L11_01475	PWY-6654	phosphopantothenate biosynthesis III
A3L11_01585	PWY-5372	carbon tetrachloride degradation II
A3L11_01585	PWY-6780	hydrogen production VI
A3L11_01585	PWY-7784	A3L11_01585
A3L11_01755	PWY-6700	queuosine biosynthesis
A3L11_01755	PWY-6711	archaeosine biosynthesis
A3L11_01755	PWY-7923	A3L11_01755
A3L11_01790	PWY-1042	glycolysis IV (plant cytosol)
A3L11_01790	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A3L11_01790	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_01790	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_01790	PWY-7385	1,3-propanediol biosynthesis (engineered)
A3L11_01830	PWY-5686	UMP biosynthesis
A3L11_01830	PWY-7790	A3L11_01830
A3L11_01830	PWY-7791	A3L11_01830
A3L11_01860	PWY-6654	phosphopantothenate biosynthesis III
A3L11_01880	PWY-6823	molybdenum cofactor biosynthesis
A3L11_02010	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L11_02015	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A3L11_02015	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A3L11_02035	PWY-7533	gliotoxin biosynthesis
A3L11_02350	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
A3L11_02365	PWY-1042	glycolysis IV (plant cytosol)
A3L11_02365	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L11_02365	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L11_02365	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_02365	PWY-5723	Rubisco shunt
A3L11_02365	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_02365	PWY-6886	1-butanol autotrophic biosynthesis
A3L11_02365	PWY-6901	superpathway of glucose and xylose degradation
A3L11_02365	PWY-7003	glycerol degradation to butanol
A3L11_02365	PWY-7124	ethylene biosynthesis V (engineered)
A3L11_02365	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L11_02420	PWY-6823	molybdenum cofactor biosynthesis
A3L11_02420	PWY-7887	A3L11_02420
A3L11_02440	PWY-6349	CDP-archaeol biosynthesis
A3L11_02485	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A3L11_02485	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A3L11_02485	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A3L11_02505	PWY-5392	reductive TCA cycle II
A3L11_02505	PWY-5537	pyruvate fermentation to acetate V
A3L11_02505	PWY-5538	pyruvate fermentation to acetate VI
A3L11_02505	PWY-5690	TCA cycle II (plants and fungi)
A3L11_02505	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L11_02505	PWY-6728	methylaspartate cycle
A3L11_02505	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L11_02505	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L11_02520	PWY-1042	glycolysis IV (plant cytosol)
A3L11_02520	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_02520	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_02520	PWY-6891	thiazole biosynthesis II (Bacillus)
A3L11_02520	PWY-6892	thiazole biosynthesis I (E. coli)
A3L11_02520	PWY-7003	glycerol degradation to butanol
A3L11_02625	PWY-6938	NADH repair
A3L11_02655	PWY-5392	reductive TCA cycle II
A3L11_02655	PWY-5537	pyruvate fermentation to acetate V
A3L11_02655	PWY-5538	pyruvate fermentation to acetate VI
A3L11_02655	PWY-5690	TCA cycle II (plants and fungi)
A3L11_02655	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L11_02655	PWY-6728	methylaspartate cycle
A3L11_02655	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L11_02655	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L11_02830	PWY-7942	A3L11_02830
A3L11_02905	PWY-5340	sulfate activation for sulfonation
A3L11_02930	PWY-5278	sulfite oxidation III
A3L11_02930	PWY-5340	sulfate activation for sulfonation
A3L11_02930	PWY-6683	sulfate reduction III (assimilatory)
A3L11_02930	PWY-6932	selenate reduction
A3L11_02945	PWY-5155	&beta;-alanine biosynthesis III
A3L11_03105	PWY-6834	spermidine biosynthesis III
A3L11_03155	PWY-7980	A3L11_03155
A3L11_03160	PWY-7980	A3L11_03160
A3L11_03195	PWY-5686	UMP biosynthesis
A3L11_03195	PWY-7790	A3L11_03195
A3L11_03195	PWY-7791	A3L11_03195
A3L11_03240	PWY-381	nitrate reduction II (assimilatory)
A3L11_03240	PWY-5675	nitrate reduction V (assimilatory)
A3L11_03240	PWY-6549	L-glutamine biosynthesis III
A3L11_03240	PWY-6963	ammonia assimilation cycle I
A3L11_03240	PWY-6964	ammonia assimilation cycle II
A3L11_03340	PWY-6749	CMP-legionaminate biosynthesis I
A3L11_03385	PWY-622	starch biosynthesis
A3L11_03465	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L11_03465	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L11_03465	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L11_03465	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L11_03465	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L11_03465	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L11_03465	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L11_03465	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A3L11_03610	PWY-3221	dTDP-L-rhamnose biosynthesis II
A3L11_03610	PWY-6808	dTDP-D-forosamine biosynthesis
A3L11_03610	PWY-6942	dTDP-D-desosamine biosynthesis
A3L11_03610	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
A3L11_03610	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
A3L11_03610	PWY-6974	dTDP-L-olivose biosynthesis
A3L11_03610	PWY-6976	dTDP-L-mycarose biosynthesis
A3L11_03610	PWY-7104	dTDP-L-megosamine biosynthesis
A3L11_03610	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
A3L11_03610	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
A3L11_03610	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
A3L11_03610	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
A3L11_03610	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
A3L11_03610	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
A3L11_03610	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
A3L11_03610	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
A3L11_03610	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
A3L11_03610	PWY-7688	A3L11_03610
A3L11_03610	PWY-7814	A3L11_03610
A3L11_03740	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L11_03765	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A3L11_03765	PWY-6596	adenosine nucleotides degradation I
A3L11_03765	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_03775	PWY-5316	nicotine biosynthesis
A3L11_03775	PWY-7342	superpathway of nicotine biosynthesis
A3L11_03780	PWY-5316	nicotine biosynthesis
A3L11_03780	PWY-7342	superpathway of nicotine biosynthesis
A3L11_03790	PWY-5316	nicotine biosynthesis
A3L11_03790	PWY-5381	pyridine nucleotide cycling (plants)
A3L11_03790	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
A3L11_03790	PWY-7342	superpathway of nicotine biosynthesis
A3L11_03795	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
A3L11_03795	PWY-6891	thiazole biosynthesis II (Bacillus)
A3L11_03795	PWY-6892	thiazole biosynthesis I (E. coli)
A3L11_03800	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
A3L11_03805	PWY-1881	formate oxidation to CO<sub>2</sub>
A3L11_03805	PWY-5497	purine nucleobases degradation II (anaerobic)
A3L11_03805	PWY-6696	oxalate degradation III
A3L11_03805	PWY-7985	A3L11_03805
A3L11_03810	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L11_03810	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L11_03810	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L11_03810	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
A3L11_03815	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L11_03815	PWY-6124	inosine-5'-phosphate biosynthesis II
A3L11_03815	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L11_03820	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L11_03820	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L11_03820	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L11_03830	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L11_03830	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L11_03835	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L11_03835	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L11_03835	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L11_03840	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L11_03845	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L11_03845	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L11_03845	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L11_03850	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L11_03850	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L11_03850	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L11_03855	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A3L11_03855	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A3L11_03855	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A3L11_03860	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L11_03865	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_03880	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_03940	PWY-7285	methylwyosine biosynthesis
A3L11_03940	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L11_03975	PWY-7805	A3L11_03975
A3L11_03975	PWY-7807	A3L11_03975
A3L11_04140	PWY-6482	diphthamide biosynthesis (archaea)
A3L11_04140	PWY-7546	diphthamide biosynthesis (eukaryotes)
A3L11_04245	PWY-6349	CDP-archaeol biosynthesis
A3L11_04305	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A3L11_04605	PWY-4381	fatty acid biosynthesis initiation I
A3L11_04605	PWY-5743	3-hydroxypropanoate cycle
A3L11_04605	PWY-5744	glyoxylate assimilation
A3L11_04605	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A3L11_04605	PWY-6722	candicidin biosynthesis
A3L11_04735	PWY-6832	2-aminoethylphosphonate degradation II
A3L11_04905	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_04920	PWY-7205	CMP phosphorylation
A3L11_05005	PWY-1042	glycolysis IV (plant cytosol)
A3L11_05005	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L11_05005	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L11_05005	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_05005	PWY-5723	Rubisco shunt
A3L11_05005	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_05005	PWY-6886	1-butanol autotrophic biosynthesis
A3L11_05005	PWY-6901	superpathway of glucose and xylose degradation
A3L11_05005	PWY-7003	glycerol degradation to butanol
A3L11_05005	PWY-7124	ethylene biosynthesis V (engineered)
A3L11_05005	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L11_05105	PWY-4202	arsenate detoxification I (glutaredoxin)
A3L11_05105	PWY-5532	adenosine nucleotides degradation IV
A3L11_05105	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A3L11_05105	PWY-6608	guanosine nucleotides degradation III
A3L11_05105	PWY-6609	adenine and adenosine salvage III
A3L11_05105	PWY-6611	adenine and adenosine salvage V
A3L11_05105	PWY-6620	guanine and guanosine salvage
A3L11_05105	PWY-6627	salinosporamide A biosynthesis
A3L11_05105	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
A3L11_05105	PWY-7179	purine deoxyribonucleosides degradation I
A3L11_05105	PWY-7179-1	purine deoxyribonucleosides degradation
A3L11_05125	PWY-6174	mevalonate pathway II (archaea)
A3L11_05125	PWY-7391	isoprene biosynthesis II (engineered)
A3L11_05125	PWY-922	mevalonate pathway I
A3L11_05130	PWY-6174	mevalonate pathway II (archaea)
A3L11_05130	PWY-7524	mevalonate pathway III (archaea)
A3L11_05155	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
A3L11_05155	PWY-6174	mevalonate pathway II (archaea)
A3L11_05155	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
A3L11_05155	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
A3L11_05155	PWY-7102	bisabolene biosynthesis
A3L11_05155	PWY-7391	isoprene biosynthesis II (engineered)
A3L11_05155	PWY-7524	mevalonate pathway III (archaea)
A3L11_05155	PWY-7560	methylerythritol phosphate pathway II
A3L11_05155	PWY-922	mevalonate pathway I
A3L11_05265	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
A3L11_05265	PWY-622	starch biosynthesis
A3L11_05265	PWY-7900	A3L11_05265
A3L11_05320	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A3L11_05320	PWY-5723	Rubisco shunt
A3L11_05330	PWY-7183	pyrimidine nucleobases salvage I
A3L11_05355	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_05355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_05415	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A3L11_05415	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A3L11_05415	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A3L11_05425	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
A3L11_05455	PWY-5964	guanylyl molybdenum cofactor biosynthesis
A3L11_05455	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
A3L11_05620	PWY-3801	sucrose degradation II (sucrose synthase)
A3L11_05620	PWY-5054	sorbitol biosynthesis I
A3L11_05620	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
A3L11_05620	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A3L11_05620	PWY-5659	GDP-mannose biosynthesis
A3L11_05620	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_05620	PWY-621	sucrose degradation III (sucrose invertase)
A3L11_05620	PWY-622	starch biosynthesis
A3L11_05620	PWY-6981	chitin biosynthesis
A3L11_05620	PWY-6992	1,5-anhydrofructose degradation
A3L11_05620	PWY-7238	sucrose biosynthesis II
A3L11_05620	PWY-7347	sucrose biosynthesis III
A3L11_05620	PWY-7385	1,3-propanediol biosynthesis (engineered)
A3L11_05625	PWY-6855	chitin degradation I (archaea)
A3L11_05630	PWY-5659	GDP-mannose biosynthesis
A3L11_05630	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
A3L11_05640	PWY-6749	CMP-legionaminate biosynthesis I
A3L11_05855	PWY-4261	glycerol degradation I
A3L11_05915	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L11_05915	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L11_05915	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L11_05915	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A3L11_05915	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L11_05915	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L11_05920	PWY-6749	CMP-legionaminate biosynthesis I
A3L11_05930	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A3L11_05935	PWY-5941	glycogen degradation II (eukaryotic)
A3L11_05935	PWY-6731	starch degradation III
A3L11_05935	PWY-6737	starch degradation V
A3L11_05935	PWY-7238	sucrose biosynthesis II
A3L11_05945	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A3L11_06065	PWY-6349	CDP-archaeol biosynthesis
A3L11_06255	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A3L11_06255	PWY-5686	UMP biosynthesis
A3L11_06255	PWY-7790	A3L11_06255
A3L11_06255	PWY-7791	A3L11_06255
A3L11_06255	PWY-7796	A3L11_06255
A3L11_06300	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
A3L11_06310	PWY-181	photorespiration
A3L11_06390	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A3L11_06390	PWY-7177	UTP and CTP dephosphorylation II
A3L11_06390	PWY-7185	UTP and CTP dephosphorylation I
A3L11_06420	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
A3L11_06425	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A3L11_06440	PWY-7799	A3L11_06440
A3L11_06440	PWY-7800	A3L11_06440
A3L11_06575	PWY-6614	tetrahydrofolate biosynthesis
A3L11_06580	PWY-6148	tetrahydromethanopterin biosynthesis
A3L11_06600	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
A3L11_06600	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
A3L11_06600	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
A3L11_06600	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
A3L11_06600	PWY-6978	plastoquinol-9 biosynthesis II
A3L11_06645	PWY-7378	aminopropanol phosphate biosynthesis II
A3L11_06655	PWY-6174	mevalonate pathway II (archaea)
A3L11_06655	PWY-7391	isoprene biosynthesis II (engineered)
A3L11_06655	PWY-7524	mevalonate pathway III (archaea)
A3L11_06655	PWY-922	mevalonate pathway I
A3L11_06745	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A3L11_06745	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A3L11_06745	PWY-6896	thiamin salvage I
A3L11_06745	PWY-6897	thiamin salvage II
A3L11_06750	PWY-6317	galactose degradation I (Leloir pathway)
A3L11_06750	PWY-6527	stachyose degradation
A3L11_06790	PWY-40	putrescine biosynthesis I
A3L11_06790	PWY-6305	putrescine biosynthesis IV
A3L11_06850	PWY-4981	L-proline biosynthesis II (from arginine)
A3L11_06850	PWY-4984	urea cycle
A3L11_06850	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A3L11_06865	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L11_06885	PWY-1042	glycolysis IV (plant cytosol)
A3L11_06885	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L11_06885	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_06885	PWY-5723	Rubisco shunt
A3L11_06885	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_06885	PWY-6886	1-butanol autotrophic biosynthesis
A3L11_06885	PWY-6901	superpathway of glucose and xylose degradation
A3L11_06885	PWY-7003	glycerol degradation to butanol
A3L11_06885	PWY-7124	ethylene biosynthesis V (engineered)
A3L11_06885	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L11_06900	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
A3L11_06900	PWY-6269	adenosylcobalamin salvage from cobinamide II
A3L11_06900	PWY-7964	A3L11_06900
A3L11_06900	PWY-7965	A3L11_06900
A3L11_06900	PWY-7966	A3L11_06900
A3L11_06900	PWY-7967	A3L11_06900
A3L11_06900	PWY-7968	A3L11_06900
A3L11_06900	PWY-7969	A3L11_06900
A3L11_06900	PWY-7970	A3L11_06900
A3L11_06940	PWY-7805	A3L11_06940
A3L11_06940	PWY-7807	A3L11_06940
A3L11_06995	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L11_07225	PWY-2941	L-lysine biosynthesis II
A3L11_07225	PWY-2942	L-lysine biosynthesis III
A3L11_07225	PWY-5097	L-lysine biosynthesis VI
A3L11_07440	PWY-7805	A3L11_07440
A3L11_07440	PWY-7807	A3L11_07440
A3L11_07455	PWY-6167	flavin biosynthesis II (archaea)
A3L11_07470	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A3L11_07470	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
A3L11_07480	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_07665	PWY-5381	pyridine nucleotide cycling (plants)
A3L11_07665	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A3L11_07665	PWY-6596	adenosine nucleotides degradation I
A3L11_07665	PWY-6606	guanosine nucleotides degradation II
A3L11_07665	PWY-6607	guanosine nucleotides degradation I
A3L11_07665	PWY-6608	guanosine nucleotides degradation III
A3L11_07665	PWY-7185	UTP and CTP dephosphorylation I
A3L11_07665	PWY-7821	A3L11_07665
A3L11_07780	PWY-6700	queuosine biosynthesis
A3L11_07780	PWY-6711	archaeosine biosynthesis
A3L11_07780	PWY-7923	A3L11_07780
A3L11_07890	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A3L11_07890	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A3L11_07910	PWY-2941	L-lysine biosynthesis II
A3L11_07910	PWY-2942	L-lysine biosynthesis III
A3L11_07910	PWY-5097	L-lysine biosynthesis VI
A3L11_08030	PWY-6807	xyloglucan degradation II (exoglucanase)
A3L11_08035	PWY-6829	tRNA methylation (yeast)
A3L11_08065	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L11_08145	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A3L11_08145	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A3L11_08225	PWY-6823	molybdenum cofactor biosynthesis
A3L11_08360	PWY-6823	molybdenum cofactor biosynthesis
A3L11_08410	PWY-6654	phosphopantothenate biosynthesis III
A3L11_08610	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A3L11_08715	PWY-5663	tetrahydrobiopterin biosynthesis I
A3L11_08715	PWY-5664	tetrahydrobiopterin biosynthesis II
A3L11_08715	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A3L11_08715	PWY-6703	preQ<sub>0</sub> biosynthesis
A3L11_08715	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A3L11_08715	PWY-6983	tetrahydrobiopterin biosynthesis III
A3L11_08715	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A3L11_08715	PWY-7852	A3L11_08715
A3L11_08715	PWY-7853	A3L11_08715
A3L11_08805	PWY-6749	CMP-legionaminate biosynthesis I
A3L11_08840	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_08865	PWY-1042	glycolysis IV (plant cytosol)
A3L11_08865	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A3L11_08865	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_08865	PWY-5723	Rubisco shunt
A3L11_08865	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_08865	PWY-6886	1-butanol autotrophic biosynthesis
A3L11_08865	PWY-6901	superpathway of glucose and xylose degradation
A3L11_08865	PWY-7003	glycerol degradation to butanol
A3L11_08865	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A3L11_08865	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A3L11_08925	PWY-7851	A3L11_08925
A3L11_08940	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A3L11_08940	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A3L11_09035	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L11_09035	PWY-181	photorespiration
A3L11_09035	PWY-2161	folate polyglutamylation
A3L11_09035	PWY-2201	folate transformations I
A3L11_09035	PWY-3661	glycine betaine degradation I
A3L11_09035	PWY-3661-1	glycine betaine degradation II (mammalian)
A3L11_09035	PWY-3841	folate transformations II
A3L11_09035	PWY-5497	purine nucleobases degradation II (anaerobic)
A3L11_09165	PWY-5392	reductive TCA cycle II
A3L11_09165	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L11_09365	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A3L11_09365	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A3L11_09440	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_09475	PWY-6825	phosphatidylcholine biosynthesis V
A3L11_09550	PWY-6123	inosine-5'-phosphate biosynthesis I
A3L11_09550	PWY-6124	inosine-5'-phosphate biosynthesis II
A3L11_09550	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_09550	PWY-7234	inosine-5'-phosphate biosynthesis III
A3L11_09570	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L11_09570	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L11_09570	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L11_09570	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L11_09575	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A3L11_09575	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A3L11_09650	PWY-2941	L-lysine biosynthesis II
A3L11_09650	PWY-2942	L-lysine biosynthesis III
A3L11_09650	PWY-5097	L-lysine biosynthesis VI
A3L11_09705	PWY-7294	xylose degradation IV
A3L11_09705	PWY-7295	L-arabinose degradation IV
A3L11_09745	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A3L11_09745	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A3L11_09745	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L11_09745	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L11_09745	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A3L11_09745	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A3L11_09745	PWY-7205	CMP phosphorylation
A3L11_09745	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A3L11_09745	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L11_09745	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A3L11_09745	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A3L11_09745	PWY-7224	purine deoxyribonucleosides salvage
A3L11_09745	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A3L11_09745	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A3L11_09870	PWY-1622	formaldehyde assimilation I (serine pathway)
A3L11_09870	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A3L11_09870	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L11_09870	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_09870	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
A3L11_09870	PWY-6549	L-glutamine biosynthesis III
A3L11_09870	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A3L11_09870	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A3L11_09870	PWY-7124	ethylene biosynthesis V (engineered)
A3L11_09970	PWY-1042	glycolysis IV (plant cytosol)
A3L11_09970	PWY-5484	glycolysis II (from fructose 6-phosphate)
A3L11_09970	PWY-6886	1-butanol autotrophic biosynthesis
A3L11_09970	PWY-6901	superpathway of glucose and xylose degradation
A3L11_09970	PWY-7003	glycerol degradation to butanol
A3L11_10010	PWY-5741	ethylmalonyl-CoA pathway
A3L11_10010	PWY-5743	3-hydroxypropanoate cycle
A3L11_10010	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A3L11_10010	PWY-6728	methylaspartate cycle
A3L11_10010	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L11_10010	PWY-7854	A3L11_10010
A3L11_10070	PWY-6349	CDP-archaeol biosynthesis
A3L11_10085	PWY-5532	adenosine nucleotides degradation IV
A3L11_10155	PWY-4041	&gamma;-glutamyl cycle
A3L11_10155	PWY-7942	A3L11_10155
A3L11_10160	PWY-4041	&gamma;-glutamyl cycle
A3L11_10160	PWY-7942	A3L11_10160
A3L11_10175	PWY-6349	CDP-archaeol biosynthesis
A3L11_10255	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A3L11_10260	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A3L11_10260	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A3L11_10305	PWY-5392	reductive TCA cycle II
A3L11_10305	PWY-5537	pyruvate fermentation to acetate V
A3L11_10305	PWY-5538	pyruvate fermentation to acetate VI
A3L11_10305	PWY-5690	TCA cycle II (plants and fungi)
A3L11_10305	PWY-5913	TCA cycle VI (obligate autotrophs)
A3L11_10305	PWY-6728	methylaspartate cycle
A3L11_10305	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A3L11_10305	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A3L11_10420	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
A3L11_10425	PWY-6823	molybdenum cofactor biosynthesis
A3L11_10615	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A3L11_10615	PWY-6148	tetrahydromethanopterin biosynthesis
A3L11_10615	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A3L11_10615	PWY-6898	thiamin salvage III
A3L11_10615	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A3L11_10615	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A3L11_10615	PWY-7356	thiamin salvage IV (yeast)
A3L11_10615	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A3L11_10615	PWY-7852	A3L11_10615
A3L11_10615	PWY-7853	A3L11_10615
A3L11_10805	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
A3L11_10805	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
A3L11_10805	PWY-7717	A3L11_10805
A3L11_10805	PWY-7733	A3L11_10805
A3L11_10805	PWY-7734	A3L11_10805
A3L11_10805	PWY-7765	A3L11_10805
A3L11_10810	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
