A3L11_00015	SM00460	Transglutaminase/protease-like homologues
A3L11_00175	SM00382	ATPases associated with a variety of cellular activities
A3L11_00215	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_00215	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_00215	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_00220	SM00382	ATPases associated with a variety of cellular activities
A3L11_00240	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_00250	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L11_00260	SM00966	SpoVT / AbrB like domain 
A3L11_00270	SM00382	ATPases associated with a variety of cellular activities
A3L11_00275	SM00849	Metallo-beta-lactamase superfamily
A3L11_00285	SM01400	A3L11_00285
A3L11_00305	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_00355	SM00966	SpoVT / AbrB like domain 
A3L11_00370	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_00380	SM00090	RIO-like kinase
A3L11_00390	SM00382	ATPases associated with a variety of cellular activities
A3L11_00450	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_00675	SM00344	helix_turn_helix ASNC type
A3L11_00715	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_00735	SM00931	NOSIC (NUC001) domain
A3L11_00740	SM01206	A3L11_00740
A3L11_00770	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_00820	SM00881	CoA binding domain
A3L11_00830	SM00849	Metallo-beta-lactamase superfamily
A3L11_00980	SM00382	ATPases associated with a variety of cellular activities
A3L11_00985	SM00382	ATPases associated with a variety of cellular activities
A3L11_00995	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L11_00995	SM00487	DEAD-like helicases superfamily
A3L11_00995	SM00490	helicase superfamily c-terminal domain
A3L11_01020	SM00382	ATPases associated with a variety of cellular activities
A3L11_01025	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_01070	SM00864	Tubulin/FtsZ family, GTPase domain
A3L11_01070	SM00865	Tubulin/FtsZ family, C-terminal domain
A3L11_01090	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_01095	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L11_01135	SM00382	ATPases associated with a variety of cellular activities
A3L11_01165	SM00385	domain present in cyclins, TFIIB and Retinoblastoma
A3L11_01175	SM00803	TATA box binding protein associated factor
A3L11_01195	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_01260	SM00382	ATPases associated with a variety of cellular activities
A3L11_01300	SM00881	CoA binding domain
A3L11_01345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L11_01360	SM00382	ATPases associated with a variety of cellular activities
A3L11_01395	SM00632	A3L11_01395
A3L11_01395	SM00642	Alpha-amylase domain
A3L11_01425	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_01425	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L11_01500	SM00966	SpoVT / AbrB like domain 
A3L11_01505	SM01407	A3L11_01505
A3L11_01615	SM00382	ATPases associated with a variety of cellular activities
A3L11_01635	SM00531	Transcription initiation factor IIE
A3L11_01740	SM00382	ATPases associated with a variety of cellular activities
A3L11_01755	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_01785	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L11_01810	SM00344	helix_turn_helix ASNC type
A3L11_01870	SM00986	Uracil DNA glycosylase superfamily
A3L11_01870	SM00987	UreE urease accessory protein, C-terminal domain 
A3L11_01930	SM01007	Class II Aldolase and Adducin N-terminal domain
A3L11_01950	SM00487	DEAD-like helicases superfamily
A3L11_01950	SM00490	helicase superfamily c-terminal domain
A3L11_02125	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_02295	SM00981	A3L11_02295
A3L11_02350	SM01133	A3L11_02350
A3L11_02365	SM01192	A3L11_02365
A3L11_02365	SM01193	A3L11_02365
A3L11_02390	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_02395	SM00344	helix_turn_helix ASNC type
A3L11_02410	SM00344	helix_turn_helix ASNC type
A3L11_02460	SM00769	Water Stress and Hypersensitive response
A3L11_02470	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_02500	SM00903	Flavin reductase like domain
A3L11_02505	SM00881	CoA binding domain
A3L11_02540	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_02540	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_02550	SM00382	ATPases associated with a variety of cellular activities
A3L11_02550	SM01074	CDC6, C terminal
A3L11_02570	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L11_02570	SM00382	ATPases associated with a variety of cellular activities
A3L11_02610	SM00506	Appr-1"-p processing enzyme
A3L11_02635	SM00642	Alpha-amylase domain
A3L11_02640	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_02650	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_02655	SM00881	CoA binding domain
A3L11_02660	SM00670	Large family of predicted nucleotide-binding domains
A3L11_02690	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_02720	SM00981	A3L11_02720
A3L11_02745	SM00382	ATPases associated with a variety of cellular activities
A3L11_02820	SM01022	A3L11_02820
A3L11_02845	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_02865	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3L11_03000	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_03025	SM00155	Phospholipase D. Active site motifs.
A3L11_03040	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L11_03055	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_03155	SM00382	ATPases associated with a variety of cellular activities
A3L11_03170	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L11_03185	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_03215	SM00382	ATPases associated with a variety of cellular activities
A3L11_03220	SM00382	ATPases associated with a variety of cellular activities
A3L11_03240	SM01230	A3L11_03240
A3L11_03300	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_03305	SM00382	ATPases associated with a variety of cellular activities
A3L11_03315	SM00093	SERine  Proteinase INhibitors
A3L11_03350	SM00382	ATPases associated with a variety of cellular activities
A3L11_03375	SM00642	Alpha-amylase domain
A3L11_03565	SM00382	ATPases associated with a variety of cellular activities
A3L11_03585	SM01066	Carbohydrate binding domain
A3L11_03715	SM00888	EF-1 guanine nucleotide exchange domain
A3L11_03730	SM00028	Tetratricopeptide repeats
A3L11_03765	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_03765	SM01240	A3L11_03765
A3L11_03805	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L11_03830	SM01001	AIR carboxylase
A3L11_03835	SM01209	A3L11_03835
A3L11_03835	SM01210	A3L11_03835
A3L11_03850	SM01211	A3L11_03850
A3L11_03930	SM00864	Tubulin/FtsZ family, GTPase domain
A3L11_03950	SM01402	A3L11_03950
A3L11_03965	SM01389	A3L11_03965
A3L11_03970	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L11_04195	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L11_04200	SM00670	Large family of predicted nucleotide-binding domains
A3L11_04215	SM01405	A3L11_04215
A3L11_04235	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_04235	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L11_04285	SM00529	Helix-turn-helix diphteria tox regulatory element
A3L11_04295	SM00382	ATPases associated with a variety of cellular activities
A3L11_04310	SM00518	AP endonuclease family 2
A3L11_04365	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_04365	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_04365	SM00486	DNA polymerase type-B family
A3L11_04410	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L11_04415	SM00710	Parallel beta-helix repeats
A3L11_04415	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
A3L11_04530	SM00948	Proteasome subunit A N-terminal signature  Add an annotation
A3L11_04540	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L11_04540	SM00322	K homology RNA-binding domain
A3L11_04565	SM00709	Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
A3L11_04570	SM01022	A3L11_04570
A3L11_04585	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_04610	SM00653	domain present in translation initiation factor eIF2B and eIF5
A3L11_04615	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_04615	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_04615	SM00350	minichromosome  maintenance proteins
A3L11_04615	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_04700	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A3L11_04705	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L11_04725	SM00382	ATPases associated with a variety of cellular activities
A3L11_04795	SM01382	A3L11_04795
A3L11_04795	SM01383	A3L11_04795
A3L11_04810	SM00322	K homology RNA-binding domain
A3L11_04825	SM00538	A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
A3L11_04835	SM01374	A3L11_04835
A3L11_04840	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L11_04845	SM00363	S4 RNA-binding domain
A3L11_04870	SM01393	A3L11_04870
A3L11_04875	SM01416	A3L11_04875
A3L11_04910	SM01415	A3L11_04910
A3L11_04935	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_04935	SM01136	A3L11_04935
A3L11_04955	SM00363	S4 RNA-binding domain
A3L11_04955	SM01390	A3L11_04955
A3L11_04965	SM00662	RNA polymerases D
A3L11_05005	SM01192	A3L11_05005
A3L11_05005	SM01193	A3L11_05005
A3L11_05020	SM01377	A3L11_05020
A3L11_05045	SM00344	helix_turn_helix ASNC type
A3L11_05070	SM00382	ATPases associated with a variety of cellular activities
A3L11_05070	SM00962	SRP54-type protein, GTPase domain
A3L11_05070	SM00963	SRP54-type protein, helical bundle domain
A3L11_05150	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L11_05155	SM01240	A3L11_05155
A3L11_05165	SM00849	Metallo-beta-lactamase superfamily
A3L11_05210	SM01384	A3L11_05210
A3L11_05220	SM00966	SpoVT / AbrB like domain 
A3L11_05270	SM00938	Nitrogen regulatory protein P-II
A3L11_05285	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A3L11_05305	SM00322	K homology RNA-binding domain
A3L11_05305	SM00849	Metallo-beta-lactamase superfamily
A3L11_05305	SM01027	Beta-Casp domain
A3L11_05310	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_05350	SM00966	SpoVT / AbrB like domain 
A3L11_05405	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_05480	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L11_05485	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_05495	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_05505	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_05515	SM00382	ATPases associated with a variety of cellular activities
A3L11_05525	SM00382	ATPases associated with a variety of cellular activities
A3L11_05590	SM00028	Tetratricopeptide repeats
A3L11_05595	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
A3L11_05600	SM00849	Metallo-beta-lactamase superfamily
A3L11_05655	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L11_05735	SM00322	K homology RNA-binding domain
A3L11_05750	SM00663	RNA polymerase I subunit A N-terminus
A3L11_05905	SM00382	ATPases associated with a variety of cellular activities
A3L11_05950	SM00493	A3L11_05950
A3L11_05955	SM00493	A3L11_05955
A3L11_05960	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_05995	SM00649	Ribosomal protein L11/L12
A3L11_06000	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A3L11_06000	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3L11_06010	SM00864	Tubulin/FtsZ family, GTPase domain
A3L11_06010	SM00865	Tubulin/FtsZ family, C-terminal domain
A3L11_06060	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3L11_06060	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3L11_06060	SM00493	A3L11_06060
A3L11_06075	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_06120	SM00487	DEAD-like helicases superfamily
A3L11_06120	SM00490	helicase superfamily c-terminal domain
A3L11_06150	SM00670	Large family of predicted nucleotide-binding domains
A3L11_06155	SM00966	SpoVT / AbrB like domain 
A3L11_06165	SM00487	DEAD-like helicases superfamily
A3L11_06215	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_06215	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_06215	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3L11_06215	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3L11_06215	SM00487	DEAD-like helicases superfamily
A3L11_06215	SM00493	A3L11_06215
A3L11_06245	SM00661	RNA polymerase subunit 9
A3L11_06255	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3L11_06280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L11_06285	SM00322	K homology RNA-binding domain
A3L11_06330	SM00670	Large family of predicted nucleotide-binding domains
A3L11_06415	SM00849	Metallo-beta-lactamase superfamily
A3L11_06430	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_06450	SM00382	ATPases associated with a variety of cellular activities
A3L11_06460	SM01118	A3L11_06460
A3L11_06515	SM00316	Ribosomal protein S1-like RNA-binding domain
A3L11_06595	SM00382	ATPases associated with a variety of cellular activities
A3L11_06605	SM00487	DEAD-like helicases superfamily
A3L11_06605	SM00490	helicase superfamily c-terminal domain
A3L11_06615	SM00873	B3/4 domain
A3L11_06615	SM00874	tRNA synthetase B5 domain
A3L11_06645	SM00829	Enoylreductase
A3L11_06660	SM00845	GatB domain
A3L11_06665	SM00870	A3L11_06665
A3L11_06695	SM00650	Ribosomal RNA adenine dimethylases
A3L11_06705	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_06725	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_06760	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_06770	SM00710	Parallel beta-helix repeats
A3L11_06780	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_06795	SM01376	A3L11_06795
A3L11_06830	SM00382	ATPases associated with a variety of cellular activities
A3L11_06890	SM00986	Uracil DNA glycosylase superfamily
A3L11_06890	SM00987	UreE urease accessory protein, C-terminal domain 
A3L11_06910	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L11_06970	SM00879	A3L11_06970
A3L11_06975	SM00659	RNA polymerase subunit CX
A3L11_07000	SM00382	ATPases associated with a variety of cellular activities
A3L11_07075	SM00344	helix_turn_helix ASNC type
A3L11_07170	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_07195	SM00984	UDP binding domain
A3L11_07215	SM00836	DALR anticodon binding domain
A3L11_07215	SM01016	Arginyl tRNA synthetase N terminal dom
A3L11_07225	SM01130	A3L11_07225
A3L11_07230	SM01194	A3L11_07230
A3L11_07295	SM01386	A3L11_07295
A3L11_07295	SM01387	A3L11_07295
A3L11_07310	SM01397	A3L11_07310
A3L11_07315	SM00981	A3L11_07315
A3L11_07325	SM00344	helix_turn_helix ASNC type
A3L11_07335	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_07355	SM00382	ATPases associated with a variety of cellular activities
A3L11_07360	SM00382	ATPases associated with a variety of cellular activities
A3L11_07395	SM00320	WD40 repeats
A3L11_07400	SM00382	ATPases associated with a variety of cellular activities
A3L11_07425	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_07425	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_07455	SM00419	helix_turn_helix, cAMP Regulatory protein
A3L11_07515	SM00946	Prolyl-tRNA synthetase, C-terminal
A3L11_07530	SM00966	SpoVT / AbrB like domain 
A3L11_07535	SM00670	Large family of predicted nucleotide-binding domains
A3L11_07600	SM00670	Large family of predicted nucleotide-binding domains
A3L11_07660	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3L11_07670	SM00382	ATPases associated with a variety of cellular activities
A3L11_07670	SM00962	SRP54-type protein, GTPase domain
A3L11_07670	SM00963	SRP54-type protein, helical bundle domain
A3L11_07690	SM00382	ATPases associated with a variety of cellular activities
A3L11_07720	SM00840	A3L11_07720
A3L11_07755	SM00382	ATPases associated with a variety of cellular activities
A3L11_07760	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_07760	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_07760	SM00487	DEAD-like helicases superfamily
A3L11_07760	SM00490	helicase superfamily c-terminal domain
A3L11_07780	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_07800	SM00470	ParB-like nuclease domain
A3L11_07855	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3L11_07905	SM00852	Probable molybdopterin binding domain
A3L11_07910	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A3L11_07920	SM01152	A3L11_07920
A3L11_07945	SM00642	Alpha-amylase domain
A3L11_07950	SM00651	snRNP Sm proteins
A3L11_08015	SM00382	ATPases associated with a variety of cellular activities
A3L11_08020	SM00382	ATPases associated with a variety of cellular activities
A3L11_08055	SM01194	A3L11_08055
A3L11_08075	SM00899	A3L11_08075
A3L11_08115	SM00344	helix_turn_helix ASNC type
A3L11_08120	SM01118	A3L11_08120
A3L11_08135	SM00849	Metallo-beta-lactamase superfamily
A3L11_08175	SM00318	Staphylococcal nuclease homologues
A3L11_08220	SM00852	Probable molybdopterin binding domain
A3L11_08225	SM00852	Probable molybdopterin binding domain
A3L11_08250	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L11_08255	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_08265	SM01065	Starch binding domain
A3L11_08345	SM00220	Serine/Threonine protein kinases, catalytic domain
A3L11_08350	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3L11_08365	SM00382	ATPases associated with a variety of cellular activities
A3L11_08380	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
A3L11_08380	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A3L11_08435	SM00014	Acid phosphatase homologues
A3L11_08450	SM00487	DEAD-like helicases superfamily
A3L11_08450	SM00490	helicase superfamily c-terminal domain
A3L11_08540	SM00382	ATPases associated with a variety of cellular activities
A3L11_08565	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_08590	SM00849	Metallo-beta-lactamase superfamily
A3L11_08615	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
A3L11_08640	SM01403	A3L11_08640
A3L11_08655	SM00838	Elongation factor G C-terminus
A3L11_08655	SM00889	Elongation factor G, domain IV
A3L11_08670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3L11_08675	SM00382	ATPases associated with a variety of cellular activities
A3L11_08730	SM00382	ATPases associated with a variety of cellular activities
A3L11_08750	SM00387	Histidine kinase-like ATPases
A3L11_08755	SM00322	K homology RNA-binding domain
A3L11_08760	SM00090	RIO-like kinase
A3L11_08765	SM00652	eukaryotic translation initiation factor 1A
A3L11_08770	SM00382	ATPases associated with a variety of cellular activities
A3L11_08815	SM00470	ParB-like nuclease domain
A3L11_08995	SM00382	ATPases associated with a variety of cellular activities
A3L11_09010	SM00014	Acid phosphatase homologues
A3L11_09015	SM01022	A3L11_09015
A3L11_09050	SM00440	C2C2 Zinc finger
A3L11_09050	SM00661	RNA polymerase subunit 9
A3L11_09065	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3L11_09095	SM00382	ATPases associated with a variety of cellular activities
A3L11_09125	SM00872	Alpha mannosidase, middle domain
A3L11_09150	SM00530	Helix-turn-helix XRE-family like proteins 
A3L11_09185	SM00849	Metallo-beta-lactamase superfamily
A3L11_09270	SM00382	ATPases associated with a variety of cellular activities
A3L11_09295	SM00981	A3L11_09295
A3L11_09335	SM00487	DEAD-like helicases superfamily
A3L11_09335	SM00490	helicase superfamily c-terminal domain
A3L11_09350	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3L11_09370	SM01133	A3L11_09370
A3L11_09410	SM00966	SpoVT / AbrB like domain 
A3L11_09415	SM00670	Large family of predicted nucleotide-binding domains
A3L11_09440	SM00788	Adenylosuccinate synthetase
A3L11_09485	SM00849	Metallo-beta-lactamase superfamily
A3L11_09550	SM00998	Adenylosuccinate lyase C-terminus
A3L11_09565	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3L11_09570	SM00382	ATPases associated with a variety of cellular activities
A3L11_09605	SM00487	DEAD-like helicases superfamily
A3L11_09605	SM00490	helicase superfamily c-terminal domain
A3L11_09620	SM00849	Metallo-beta-lactamase superfamily
A3L11_09645	SM00710	Parallel beta-helix repeats
A3L11_09650	SM01130	A3L11_09650
A3L11_09690	SM00933	A3L11_09690
A3L11_09700	SM00670	Large family of predicted nucleotide-binding domains
A3L11_09745	SM00562	A3L11_09745
A3L11_09750	SM00746	metallochaperone-like domain
A3L11_09775	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3L11_09785	SM00244	prohibitin homologues
A3L11_09890	SM00382	ATPases associated with a variety of cellular activities
A3L11_09915	SM00487	DEAD-like helicases superfamily
A3L11_09915	SM00490	helicase superfamily c-terminal domain
A3L11_09920	SM00344	helix_turn_helix ASNC type
A3L11_09945	SM00382	ATPases associated with a variety of cellular activities
A3L11_09985	SM00382	ATPases associated with a variety of cellular activities
A3L11_09995	SM00481	DNA polymerase alpha chain like domain
A3L11_10005	SM00382	ATPases associated with a variety of cellular activities
A3L11_10020	SM00968	SMC proteins Flexible Hinge Domain
A3L11_10035	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3L11_10035	SM00487	DEAD-like helicases superfamily
A3L11_10035	SM00490	helicase superfamily c-terminal domain
A3L11_10035	SM00891	ERCC4 domain
A3L11_10055	SM00487	DEAD-like helicases superfamily
A3L11_10055	SM00490	helicase superfamily c-terminal domain
A3L11_10075	SM00465	GIY-YIG type nucleases (URI domain)
A3L11_10085	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A3L11_10100	SM00382	ATPases associated with a variety of cellular activities
A3L11_10105	SM00244	prohibitin homologues
A3L11_10120	SM00478	endonuclease III
A3L11_10145	SM00646	A3L11_10145
A3L11_10150	SM00670	Large family of predicted nucleotide-binding domains
A3L11_10160	SM00796	Allophanate hydrolase subunit 1
A3L11_10165	SM00797	Allophanate hydrolase subunit 2
A3L11_10200	SM00487	DEAD-like helicases superfamily
A3L11_10200	SM00488	A3L11_10200
A3L11_10200	SM00491	A3L11_10200
A3L11_10240	SM00493	A3L11_10240
A3L11_10275	SM00981	A3L11_10275
A3L11_10305	SM00881	CoA binding domain
A3L11_10310	SM00518	AP endonuclease family 2
A3L11_10335	SM00478	endonuclease III
A3L11_10335	SM00525	A3L11_10335
A3L11_10340	SM01072	Cell division protein 48 (CDC48) domain 2
A3L11_10365	SM00670	Large family of predicted nucleotide-binding domains
A3L11_10415	SM00670	Large family of predicted nucleotide-binding domains
A3L11_10425	SM00852	Probable molybdopterin binding domain
A3L11_10450	SM00382	ATPases associated with a variety of cellular activities
A3L11_10450	SM01072	Cell division protein 48 (CDC48) domain 2
A3L11_10450	SM01073	Cell division protein 48 (CDC48) N-terminal domain
A3L11_10475	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A3L11_10475	SM00484	Xeroderma pigmentosum G I-region
A3L11_10475	SM00485	Xeroderma pigmentosum G N-region
A3L11_10480	SM00385	domain present in cyclins, TFIIB and Retinoblastoma
A3L11_10505	SM01413	A3L11_10505
A3L11_10510	SM01103	A3L11_10510
A3L11_10530	SM00654	translation initiation factor 6
A3L11_10535	SM01380	A3L11_10535
A3L11_10560	SM00382	ATPases associated with a variety of cellular activities
A3L11_10580	SM00382	ATPases associated with a variety of cellular activities
A3L11_10580	SM01072	Cell division protein 48 (CDC48) domain 2
A3L11_10580	SM01073	Cell division protein 48 (CDC48) N-terminal domain
A3L11_10585	SM00232	JAB/MPN domain
A3L11_10625	SM00849	Metallo-beta-lactamase superfamily
A3L11_10635	SM00195	Dual specificity phosphatase, catalytic domain
A3L11_10635	SM00404	Protein tyrosine phosphatase, catalytic domain motif
A3L11_10720	SM00382	ATPases associated with a variety of cellular activities
A3L11_10725	SM00382	ATPases associated with a variety of cellular activities
A3L11_10765	SM01022	A3L11_10765
A3L11_10770	SM01022	A3L11_10770
A3L11_10810	SM00996	S-adenosyl-L-homocysteine hydrolase
A3L11_10810	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
