THERU_00005 PF00308 Bacterial dnaA protein THERU_00005 PF08299 Bacterial dnaA protein helix-turn-helix THERU_00010 PF02416 mttA/Hcf106 family THERU_00015 PF00902 Sec-independent protein translocase protein (TatC) THERU_00020 PF02153 Prephenate dehydrogenase THERU_00025 PF00850 Histone deacetylase domain THERU_00030 PF00268 Ribonucleotide reductase, small chain THERU_00035 PF03091 CutA1 divalent ion tolerance protein THERU_00040 PF00117 Glutamine amidotransferase class-I THERU_00045 PF02401 LytB protein THERU_00050 PF03749 Sugar fermentation stimulation protein THERU_00055 PF00270 DEAD/DEAH box helicase THERU_00055 PF00271 Helicase conserved C-terminal domain THERU_00055 PF17191 THERU_00055 THERU_00060 PF04316 Anti-sigma-28 factor, FlgM THERU_00075 PF01676 Metalloenzyme superfamily THERU_00075 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase THERU_00080 PF00474 Sodium:solute symporter family THERU_00085 PF01134 Glucose inhibited division protein A THERU_00085 PF13932 GidA associated domain 3 THERU_00095 PF04308 THERU_00095 THERU_00100 PF01052 Surface presentation of antigens (SPOA) THERU_00105 PF02082 Transcriptional regulator THERU_00115 PF13231 THERU_00115 THERU_00120 PF02660 THERU_00120 THERU_00125 PF02677 THERU_00125 THERU_00130 PF00883 Cytosol aminopeptidase family, catalytic domain THERU_00130 PF02789 Cytosol aminopeptidase family, N-terminal domain THERU_00140 PF03205 Molybdopterin guanine dinucleotide synthesis protein B THERU_00145 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase THERU_00150 PF01206 Sulfurtransferase TusA THERU_00155 PF13686 DsrE/DsrF/DrsH-like family THERU_00160 PF02635 DsrE/DsrF-like family THERU_00165 PF13534 4Fe-4S dicluster domain THERU_00170 PF02754 THERU_00170 THERU_00175 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_00185 PF13534 4Fe-4S dicluster domain THERU_00190 PF02754 THERU_00190 THERU_00195 PF01597 Glycine cleavage H-protein THERU_00200 PF13192 Thioredoxin domain THERU_00205 PF02635 DsrE/DsrF-like family THERU_00210 PF01597 Glycine cleavage H-protein THERU_00215 PF04055 Radical SAM superfamily THERU_00220 PF09969 THERU_00220 THERU_00230 PF03641 Possible lysine decarboxylase THERU_00235 PF00149 Calcineurin-like phosphoesterase THERU_00240 PF13476 AAA domain THERU_00240 PF13558 Putative exonuclease SbcCD, C subunit THERU_00250 PF01380 SIS domain THERU_00250 PF10432 Bacterial phospho-glucose isomerase C-terminal region THERU_00255 PF03741 THERU_00255 THERU_00260 PF00571 CBS domain THERU_00260 PF01595 THERU_00260 THERU_00260 PF03471 Transporter associated domain THERU_00265 PF05175 Methyltransferase small domain THERU_00270 PF03840 Preprotein translocase SecG subunit THERU_00285 PF00122 E1-E2 ATPase THERU_00285 PF00689 Cation transporting ATPase, C-terminus THERU_00285 PF00690 Cation transporter/ATPase, N-terminus THERU_00285 PF00702 haloacid dehalogenase-like hydrolase THERU_00290 PF02834 LigT like Phosphoesterase THERU_00295 PF00586 AIR synthase related protein, N-terminal domain THERU_00295 PF02769 AIR synthase related protein, C-terminal domain THERU_00300 PF01103 Surface antigen THERU_00300 PF07244 Surface antigen variable number repeat THERU_00305 PF01243 Pyridoxamine 5'-phosphate oxidase THERU_00310 PF02261 Aspartate decarboxylase THERU_00315 PF01242 6-pyruvoyl tetrahydropterin synthase THERU_00320 PF01165 Ribosomal protein S21 THERU_00325 PF07238 PilZ domain THERU_00330 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_00335 PF00085 Thioredoxin THERU_00340 PF01022 Bacterial regulatory protein, arsR family THERU_00345 PF01545 Cation efflux family THERU_00350 PF02541 Ppx/GppA phosphatase family THERU_00355 PF00999 Sodium/hydrogen exchanger family THERU_00360 PF02080 TrkA-C domain THERU_00365 PF13411 MerR HTH family regulatory protein THERU_00370 PF00226 DnaJ domain THERU_00370 PF00684 DnaJ central domain THERU_00370 PF01556 DnaJ C terminal domain THERU_00375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THERU_00375 PF07497 Rho termination factor, RNA-binding domain THERU_00375 PF07498 Rho termination factor, N-terminal domain THERU_00380 PF01926 50S ribosome-binding GTPase THERU_00380 PF10396 GTP-binding protein TrmE N-terminus THERU_00380 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE THERU_00395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THERU_00395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THERU_00395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THERU_00395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THERU_00400 PF01738 Dienelactone hydrolase family THERU_00410 PF10150 Ribonuclease E/G family THERU_00415 PF13525 Outer membrane lipoprotein THERU_00420 PF02410 Oligomerisation domain THERU_00425 PF06305 THERU_00425 THERU_00430 PF00460 Flagella basal body rod protein THERU_00430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THERU_00440 PF04452 RNA methyltransferase THERU_00445 PF00216 Bacterial DNA-binding protein THERU_00455 PF04055 Radical SAM superfamily THERU_00455 PF13353 4Fe-4S single cluster domain THERU_00460 PF07690 Major Facilitator Superfamily THERU_00465 PF00529 HlyD family secretion protein THERU_00465 PF16576 THERU_00465 THERU_00470 PF02321 Outer membrane efflux protein THERU_00475 PF00440 Bacterial regulatory proteins, tetR family THERU_00480 PF02321 Outer membrane efflux protein THERU_00485 PF16576 THERU_00485 THERU_00490 PF13419 Haloacid dehalogenase-like hydrolase THERU_00495 PF02867 Ribonucleotide reductase, barrel domain THERU_00510 PF00834 Ribulose-phosphate 3 epimerase family THERU_00515 PF00742 Homoserine dehydrogenase THERU_00515 PF01842 ACT domain THERU_00515 PF03447 Homoserine dehydrogenase, NAD binding domain THERU_00520 PF07998 Peptidase family M54 THERU_00525 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) THERU_00530 PF01578 THERU_00530 THERU_00535 PF02779 Transketolase, pyrimidine binding domain THERU_00535 PF02780 Transketolase, C-terminal domain THERU_00535 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THERU_00545 PF02374 Anion-transporting ATPase THERU_00550 PF03167 Uracil DNA glycosylase superfamily THERU_00555 PF02224 Cytidylate kinase THERU_00560 PF00437 Type II/IV secretion system protein THERU_00565 PF00154 recA bacterial DNA recombination protein THERU_00570 PF02686 Glu-tRNAGln amidotransferase C subunit THERU_00575 PF01894 Uncharacterised protein family UPF0047 THERU_00580 PF02830 V4R domain THERU_00585 PF16363 THERU_00585 THERU_00590 PF16363 THERU_00590 THERU_00595 PF01553 Acyltransferase THERU_00605 PF02811 PHP domain THERU_00605 PF07733 Bacterial DNA polymerase III alpha subunit THERU_00605 PF14579 Helix-hairpin-helix motif THERU_00610 PF13672 Protein phosphatase 2C THERU_00615 PF00578 AhpC/TSA family THERU_00625 PF13396 THERU_00625 THERU_00635 PF00515 Tetratricopeptide repeat THERU_00635 PF02541 Ppx/GppA phosphatase family THERU_00635 PF13424 Tetratricopeptide repeat THERU_00635 PF13432 Tetratricopeptide repeat THERU_00640 PF00595 PDZ domain (Also known as DHR or GLGF) THERU_00640 PF03572 Peptidase family S41 THERU_00645 PF00814 Glycoprotease family THERU_00650 PF01523 Putative modulator of DNA gyrase THERU_00655 PF01145 SPFH domain / Band 7 family THERU_00660 PF01882 THERU_00660 THERU_00665 PF00800 Prephenate dehydratase THERU_00665 PF01817 Chorismate mutase type II THERU_00665 PF01842 ACT domain THERU_00675 PF04055 Radical SAM superfamily THERU_00680 PF09958 THERU_00680 THERU_00685 PF00291 Pyridoxal-phosphate dependent enzyme THERU_00690 PF00873 AcrB/AcrD/AcrF family THERU_00695 PF01351 Ribonuclease HII THERU_00700 PF00171 Aldehyde dehydrogenase family THERU_00705 PF02683 THERU_00705 THERU_00710 PF00180 Isocitrate/isopropylmalate dehydrogenase THERU_00725 PF02561 Flagellar protein FliS THERU_00730 PF02465 THERU_00730 THERU_00730 PF07195 THERU_00730 THERU_00735 PF03646 FlaG protein THERU_00740 PF00669 Bacterial flagellin N-terminal helical region THERU_00740 PF00700 Bacterial flagellin C-terminal helical region THERU_00740 PF07196 Flagellin hook IN motif THERU_00750 PF17209 THERU_00750 THERU_00755 PF03747 ADP-ribosylglycohydrolase THERU_00760 PF01435 Peptidase family M48 THERU_00765 PF01668 SmpB protein THERU_00770 PF01594 THERU_00770 THERU_00780 PF08241 Methyltransferase domain THERU_00785 PF01048 Phosphorylase superfamily THERU_00790 PF04002 RadC-like JAB domain THERU_00800 PF01225 Mur ligase family, catalytic domain THERU_00800 PF02875 Mur ligase family, glutamate ligase domain THERU_00800 PF08245 Mur ligase middle domain THERU_00815 PF00115 Cytochrome C and Quinol oxidase polypeptide I THERU_00820 PF00116 Cytochrome C oxidase subunit II, periplasmic domain THERU_00820 PF02790 Cytochrome C oxidase subunit II, transmembrane domain THERU_00830 PF00510 Cytochrome c oxidase subunit III THERU_00835 PF01255 Putative undecaprenyl diphosphate synthase THERU_00840 PF01148 Cytidylyltransferase family THERU_00845 PF00263 THERU_00845 THERU_00855 PF00574 Clp protease THERU_00855 PF01957 NfeD-like C-terminal, partner-binding THERU_00870 PF01106 NifU-like domain THERU_00875 PF01368 DHH family THERU_00875 PF02272 DHHA1 domain THERU_00880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THERU_00880 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_00890 PF00119 ATP synthase A chain THERU_00895 PF00137 ATP synthase subunit C THERU_00900 PF00468 Ribosomal protein L34 THERU_00905 PF01809 THERU_00905 THERU_00910 PF02096 60Kd inner membrane protein THERU_00910 PF14849 YidC periplasmic domain THERU_00915 PF01370 NAD dependent epimerase/dehydratase family THERU_00920 PF00512 His Kinase A (phospho-acceptor) domain THERU_00920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THERU_00930 PF00071 Ras family THERU_00940 PF00672 HAMP domain THERU_00940 PF11845 THERU_00940 THERU_00945 PF01895 PhoU domain THERU_00950 PF02223 Thymidylate kinase THERU_00955 PF00534 Glycosyl transferases group 1 THERU_00955 PF08323 Starch synthase catalytic domain THERU_00960 PF01467 Cytidylyltransferase THERU_00970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THERU_00970 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THERU_00985 PF02577 Bifunctional nuclease THERU_00990 PF00005 ABC transporter THERU_00995 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THERU_00995 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THERU_01000 PF00343 Carbohydrate phosphorylase THERU_01005 PF00210 Ferritin-like domain THERU_01010 PF13580 SIS domain THERU_01015 PF01513 ATP-NAD kinase THERU_01025 PF00579 tRNA synthetases class I (W and Y) THERU_01030 PF01522 Polysaccharide deacetylase THERU_01035 PF00069 Protein kinase domain THERU_01040 PF03572 Peptidase family S41 THERU_01040 PF13180 PDZ domain THERU_01045 PF13671 AAA domain THERU_01050 PF13098 Thioredoxin-like domain THERU_01060 PF00300 Histidine phosphatase superfamily (branch 1) THERU_01065 PF00133 tRNA synthetases class I (I, L, M and V) THERU_01065 PF08264 Anticodon-binding domain of tRNA THERU_01065 PF09334 tRNA synthetases class I (M) THERU_01070 PF01266 FAD dependent oxidoreductase THERU_01080 PF01910 Domain of unknown function DUF77 THERU_01085 PF05362 Lon protease (S16) C-terminal proteolytic domain THERU_01085 PF13654 AAA domain THERU_01090 PF00698 Acyl transferase domain THERU_01100 PF01654 THERU_01100 THERU_01105 PF01425 Amidase THERU_01110 PF00814 Glycoprotease family THERU_01120 PF01520 N-acetylmuramoyl-L-alanine amidase THERU_01125 PF04055 Radical SAM superfamily THERU_01125 PF13394 4Fe-4S single cluster domain THERU_01130 PF00009 Elongation factor Tu GTP binding domain THERU_01130 PF04760 Translation initiation factor IF-2, N-terminal region THERU_01130 PF11987 Translation-initiation factor 2 THERU_01140 PF00202 Aminotransferase class-III THERU_01145 PF01464 Transglycosylase SLT domain THERU_01145 PF13181 Tetratricopeptide repeat THERU_01145 PF13432 Tetratricopeptide repeat THERU_01155 PF01192 RNA polymerase Rpb6 THERU_01160 PF00625 Guanylate kinase THERU_01170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THERU_01170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THERU_01175 PF00905 Penicillin binding protein transpeptidase domain THERU_01175 PF03717 Penicillin-binding Protein dimerisation domain THERU_01185 PF04085 rod shape-determining protein MreC THERU_01190 PF06723 MreB/Mbl protein THERU_01195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THERU_01195 PF03129 Anticodon binding domain THERU_01195 PF04073 Aminoacyl-tRNA editing domain THERU_01200 PF02481 DNA recombination-mediator protein A THERU_01205 PF03772 THERU_01205 THERU_01210 PF00291 Pyridoxal-phosphate dependent enzyme THERU_01215 PF01555 DNA methylase THERU_01220 PF04851 Type III restriction enzyme, res subunit THERU_01225 PF00171 Aldehyde dehydrogenase family THERU_01230 PF00595 PDZ domain (Also known as DHR or GLGF) THERU_01230 PF02163 Peptidase family M50 THERU_01230 PF13180 PDZ domain THERU_01235 PF01715 IPP transferase THERU_01240 PF00140 Sigma-70 factor, region 1 THERU_01240 PF03979 Sigma-70 factor, region 1 THERU_01240 PF04539 Sigma-70 region 3 THERU_01240 PF04542 Sigma-70 region 2 THERU_01240 PF04545 Sigma-70, region 4 THERU_01245 PF00156 Phosphoribosyl transferase domain THERU_01255 PF00437 Type II/IV secretion system protein THERU_01255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THERU_01270 PF03934 Type II secretion system (T2SS), protein K THERU_01275 PF02517 CAAX protease self-immunity THERU_01285 PF00082 Subtilase family THERU_01290 PF00425 chorismate binding enzyme THERU_01290 PF04715 Anthranilate synthase component I, N terminal region THERU_01295 PF01409 tRNA synthetases class II core domain (F) THERU_01295 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THERU_01300 PF00453 Ribosomal protein L20 THERU_01305 PF08734 THERU_01305 THERU_01315 PF14489 QueF-like protein THERU_01320 PF01841 Transglutaminase-like superfamily THERU_01325 PF11992 THERU_01325 THERU_01330 PF01966 HD domain THERU_01340 PF02355 Protein export membrane protein THERU_01340 PF07549 SecD/SecF GG Motif THERU_01345 PF00691 OmpA family THERU_01350 PF00749 tRNA synthetases class I (E and Q), catalytic domain THERU_01355 PF00999 Sodium/hydrogen exchanger family THERU_01360 PF00692 dUTPase THERU_01370 PF00013 KH domain THERU_01370 PF00575 S1 RNA binding domain THERU_01370 PF01138 3' exoribonuclease family, domain 1 THERU_01370 PF03725 3' exoribonuclease family, domain 2 THERU_01370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THERU_01375 PF00312 Ribosomal protein S15 THERU_01380 PF00478 IMP dehydrogenase / GMP reductase domain THERU_01380 PF00571 CBS domain THERU_01385 PF00106 short chain dehydrogenase THERU_01390 PF00563 EAL domain THERU_01390 PF00990 GGDEF domain THERU_01395 PF07314 THERU_01395 THERU_01400 PF03170 Bacterial cellulose synthase subunit THERU_01415 PF06094 AIG2-like family THERU_01430 PF01724 Domain of unknown function DUF29 THERU_01435 PF00012 Hsp70 protein THERU_01440 PF01430 Hsp33 protein THERU_01445 PF00238 Ribosomal protein L14p/L23e THERU_01450 PF00467 KOW motif THERU_01450 PF17136 THERU_01450 THERU_01455 PF00281 Ribosomal protein L5 THERU_01455 PF00673 ribosomal L5P family C-terminus THERU_01460 PF00253 Ribosomal protein S14p/S29e THERU_01465 PF00410 Ribosomal protein S8 THERU_01470 PF00347 Ribosomal protein L6 THERU_01475 PF00861 Ribosomal L18p/L5e family THERU_01480 PF00333 Ribosomal protein S5, N-terminal domain THERU_01480 PF03719 Ribosomal protein S5, C-terminal domain THERU_01485 PF00327 Ribosomal protein L30p/L7e THERU_01490 PF00828 Ribosomal protein L18e/L15 THERU_01495 PF00344 SecY translocase THERU_01500 PF00406 Adenylate kinase THERU_01500 PF05191 Adenylate kinase, active site lid THERU_01505 PF00557 Metallopeptidase family M24 THERU_01510 PF01176 Translation initiation factor 1A / IF-1 THERU_01515 PF00444 Ribosomal protein L36 THERU_01520 PF00416 Ribosomal protein S13/S18 THERU_01525 PF00411 Ribosomal protein S11 THERU_01530 PF00163 Ribosomal protein S4/S9 N-terminal domain THERU_01530 PF01479 S4 domain THERU_01535 PF01000 RNA polymerase Rpb3/RpoA insert domain THERU_01535 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THERU_01535 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THERU_01540 PF01196 Ribosomal protein L17 THERU_01545 PF02325 THERU_01545 THERU_01550 PF01479 S4 domain THERU_01550 PF01728 FtsJ-like methyltransferase THERU_01570 PF00717 Peptidase S24-like THERU_01570 PF10502 Signal peptidase, peptidase S26 THERU_01575 PF04055 Radical SAM superfamily THERU_01575 PF13394 4Fe-4S single cluster domain THERU_01580 PF02195 ParB-like nuclease domain THERU_01585 PF00152 tRNA synthetases class II (D, K and N) THERU_01585 PF01336 OB-fold nucleic acid binding domain THERU_01590 PF00551 Formyl transferase THERU_01605 PF01259 SAICAR synthetase THERU_01610 PF00534 Glycosyl transferases group 1 THERU_01610 PF13439 Glycosyltransferase Family 4 THERU_01615 PF00534 Glycosyl transferases group 1 THERU_01615 PF13263 PHP-associated THERU_01615 PF13439 Glycosyltransferase Family 4 THERU_01620 PF10096 THERU_01620 THERU_01625 PF05787 Bacterial protein of unknown function (DUF839) THERU_01630 PF02441 Flavoprotein THERU_01630 PF04127 DNA / pantothenate metabolism flavoprotein THERU_01635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THERU_01635 PF01842 ACT domain THERU_01635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THERU_01640 PF01507 Phosphoadenosine phosphosulfate reductase family THERU_01650 PF12161 HsdM N-terminal domain THERU_01655 PF01634 ATP phosphoribosyltransferase THERU_01665 PF00890 FAD binding domain THERU_01665 PF02910 Fumarate reductase flavoprotein C-term THERU_01670 PF01933 Uncharacterised protein family UPF0052 THERU_01675 PF02620 THERU_01675 THERU_01680 PF00753 Metallo-beta-lactamase superfamily THERU_01685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THERU_01690 PF05175 Methyltransferase small domain THERU_01695 PF04368 THERU_01695 THERU_01700 PF01551 Peptidase family M23 THERU_01710 PF02635 DsrE/DsrF-like family THERU_01715 PF00152 tRNA synthetases class II (D, K and N) THERU_01720 PF03465 eRF1 domain 3 THERU_01725 PF01936 NYN domain THERU_01730 PF01687 Riboflavin kinase THERU_01730 PF06574 FAD synthetase THERU_01740 PF08843 Nucleotidyl transferase of unknown function (DUF1814) THERU_01750 PF02754 THERU_01750 THERU_01750 PF13183 4Fe-4S dicluster domain THERU_01755 PF00675 Insulinase (Peptidase family M16) THERU_01755 PF05193 Peptidase M16 inactive domain THERU_01760 PF00675 Insulinase (Peptidase family M16) THERU_01760 PF05193 Peptidase M16 inactive domain THERU_01765 PF16363 THERU_01765 THERU_01770 PF02416 mttA/Hcf106 family THERU_01775 PF01029 NusB family THERU_01780 PF00885 6,7-dimethyl-8-ribityllumazine synthase THERU_01785 PF02569 Pantoate-beta-alanine ligase THERU_01790 PF09958 THERU_01790 THERU_01795 PF03129 Anticodon binding domain THERU_01795 PF13393 Histidyl-tRNA synthetase THERU_01800 PF06557 Protein of unknown function (DUF1122) THERU_01805 PF09383 NIL domain THERU_01810 PF00586 AIR synthase related protein, N-terminal domain THERU_01815 PF00072 Response regulator receiver domain THERU_01815 PF00158 Sigma-54 interaction domain THERU_01815 PF02954 Bacterial regulatory protein, Fis family THERU_01820 PF01808 AICARFT/IMPCHase bienzyme THERU_01820 PF02142 MGS-like domain THERU_01825 PF13507 CobB/CobQ-like glutamine amidotransferase domain THERU_01830 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase THERU_01835 PF11306 Protein of unknown function (DUF3108) THERU_01840 PF02673 THERU_01840 THERU_01860 PF09414 RNA ligase THERU_01865 PF00772 DnaB-like helicase N terminal domain THERU_01865 PF03796 DnaB-like helicase C terminal domain THERU_01875 PF00920 Dehydratase family THERU_01880 PF00128 Alpha amylase, catalytic domain THERU_01880 PF02806 Alpha amylase, C-terminal all-beta domain THERU_01880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THERU_01890 PF02699 Preprotein translocase subunit THERU_01895 PF00501 AMP-binding enzyme THERU_01895 PF00550 Phosphopantetheine attachment site THERU_01895 PF01553 Acyltransferase THERU_01900 PF00696 Amino acid kinase family THERU_01905 PF00889 Elongation factor TS THERU_01910 PF00521 DNA gyrase/topoisomerase IV, subunit A THERU_01910 PF03989 DNA gyrase C-terminal domain, beta-propeller THERU_01915 PF01420 Type I restriction modification DNA specificity domain THERU_01920 PF02384 N-6 DNA Methylase THERU_01920 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) THERU_01925 PF01724 Domain of unknown function DUF29 THERU_01935 PF00072 Response regulator receiver domain THERU_01935 PF04397 LytTr DNA-binding domain THERU_01940 PF04463 THERU_01940 THERU_01940 PF08349 THERU_01940 THERU_01945 PF13450 NAD(P)-binding Rossmann-like domain THERU_01950 PF06580 THERU_01950 THERU_01955 PF01613 Flavin reductase like domain THERU_01960 PF00875 DNA photolyase THERU_01965 PF02036 SCP-2 sterol transfer family THERU_01980 PF00122 E1-E2 ATPase THERU_01980 PF00702 haloacid dehalogenase-like hydrolase THERU_02005 PF12801 THERU_02005 THERU_02010 PF00593 TonB dependent receptor THERU_02010 PF07715 TonB-dependent Receptor Plug Domain THERU_02015 PF01618 THERU_02015 THERU_02020 PF02472 Biopolymer transport protein ExbD/TolR THERU_02025 PF03544 Gram-negative bacterial TonB protein C-terminal THERU_02030 PF13435 Cytochrome c554 and c-prime THERU_02040 PF02547 Queuosine biosynthesis protein THERU_02045 PF00460 Flagella basal body rod protein THERU_02045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THERU_02050 PF01367 5'-3' exonuclease, C-terminal SAM fold THERU_02050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THERU_02055 PF02581 Thiamine monophosphate synthase/TENI THERU_02060 PF13380 CoA binding domain THERU_02065 PF02347 Glycine cleavage system P-protein THERU_02070 PF01597 Glycine cleavage H-protein THERU_02085 PF00116 Cytochrome C oxidase subunit II, periplasmic domain THERU_02090 PF00115 Cytochrome C and Quinol oxidase polypeptide I THERU_02095 PF02630 SCO1/SenC THERU_02100 PF02386 Cation transport protein THERU_02105 PF02080 TrkA-C domain THERU_02105 PF02254 TrkA-N domain THERU_02110 PF02606 Tetraacyldisaccharide-1-P 4'-kinase THERU_02115 PF03706 THERU_02115 THERU_02120 PF02511 Thymidylate synthase complementing protein THERU_02125 PF00288 GHMP kinases N terminal domain THERU_02125 PF08544 GHMP kinases C terminal THERU_02135 PF01152 Bacterial-like globin THERU_02140 PF00027 Cyclic nucleotide-binding domain THERU_02140 PF13545 Crp-like helix-turn-helix domain THERU_02145 PF13085 2Fe-2S iron-sulfur cluster binding domain THERU_02145 PF13183 4Fe-4S dicluster domain THERU_02150 PF01066 CDP-alcohol phosphatidyltransferase THERU_02155 PF04357 THERU_02155 THERU_02170 PF00216 Bacterial DNA-binding protein THERU_02175 PF00575 S1 RNA binding domain THERU_02180 PF01040 UbiA prenyltransferase family THERU_02185 PF01951 Archease protein family (MTH1598/TM1083) THERU_02190 PF01113 Dihydrodipicolinate reductase, N-terminus THERU_02190 PF05173 Dihydrodipicolinate reductase, C-terminus THERU_02200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THERU_02200 PF03129 Anticodon binding domain THERU_02200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THERU_02205 PF02754 THERU_02205 THERU_02210 PF00578 AhpC/TSA family THERU_02215 PF03883 THERU_02215 THERU_02220 PF00535 Glycosyl transferase family 2 THERU_02225 PF00156 Phosphoribosyl transferase domain THERU_02230 PF00155 Aminotransferase class I and II THERU_02235 PF01258 Prokaryotic dksA/traR C4-type zinc finger THERU_02240 PF13145 PPIC-type PPIASE domain THERU_02240 PF13624 SurA N-terminal domain THERU_02245 PF00285 Citrate synthase THERU_02250 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THERU_02250 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THERU_02255 PF03266 NTPase THERU_02260 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THERU_02265 PF00155 Aminotransferase class I and II THERU_02270 PF00571 CBS domain THERU_02275 PF09360 Iron-binding zinc finger CDGSH type THERU_02280 PF00857 Isochorismatase family THERU_02285 PF00535 Glycosyl transferase family 2 THERU_02290 PF01959 THERU_02290 THERU_02295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THERU_02295 PF03900 Porphobilinogen deaminase, C-terminal domain THERU_02300 PF02641 Uncharacterized ACR, COG1993 THERU_02305 PF02537 THERU_02305 THERU_02310 PF02641 Uncharacterized ACR, COG1993 THERU_02315 PF04055 Radical SAM superfamily THERU_02315 PF12836 Helix-hairpin-helix motif THERU_02320 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin THERU_02325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THERU_02325 PF10531 SLBB domain THERU_02325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THERU_02330 PF00464 Serine hydroxymethyltransferase THERU_02335 PF08668 HDOD domain THERU_02340 PF04055 Radical SAM superfamily THERU_02340 PF06969 HemN C-terminal domain THERU_02345 PF00005 ABC transporter THERU_02345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THERU_02350 PF00571 CBS domain THERU_02350 PF01595 THERU_02350 THERU_02350 PF03471 Transporter associated domain THERU_02355 PF01022 Bacterial regulatory protein, arsR family THERU_02360 PF13192 Thioredoxin domain THERU_02365 PF03773 THERU_02365 THERU_02370 PF01451 Low molecular weight phosphotyrosine protein phosphatase THERU_02375 PF02040 THERU_02375 THERU_02385 PF04402 Protein of unknown function (DUF541) THERU_02395 PF01554 MatE THERU_02400 PF01734 Patatin-like phospholipase THERU_02405 PF00565 Staphylococcal nuclease homologue THERU_02410 PF00398 Ribosomal RNA adenine dimethylase THERU_02415 PF13098 Thioredoxin-like domain THERU_02420 PF01613 Flavin reductase like domain THERU_02425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THERU_02425 PF02403 Seryl-tRNA synthetase N-terminal domain THERU_02430 PF00583 Acetyltransferase (GNAT) family THERU_02435 PF00476 DNA polymerase family A THERU_02435 PF01612 3'-5' exonuclease THERU_02440 PF02107 THERU_02440 THERU_02445 PF02119 THERU_02445 THERU_02450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THERU_02450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THERU_02450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THERU_02455 PF00291 Pyridoxal-phosphate dependent enzyme THERU_02460 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_02465 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_02470 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_02470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THERU_02475 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THERU_02480 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THERU_02485 PF12838 4Fe-4S dicluster domain THERU_02490 PF00146 NADH dehydrogenase THERU_02495 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THERU_02495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THERU_02500 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THERU_02505 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_02510 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_02515 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_02515 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THERU_02520 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THERU_02525 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THERU_02530 PF13237 4Fe-4S dicluster domain THERU_02535 PF00294 pfkB family carbohydrate kinase THERU_02540 PF02021 Uncharacterised protein family UPF0102 THERU_02545 PF13083 KH domain THERU_02550 PF00886 Ribosomal protein S16 THERU_02555 PF00731 AIR carboxylase THERU_02560 PF00121 Triosephosphate isomerase THERU_02565 PF03739 THERU_02565 THERU_02570 PF00490 Delta-aminolevulinic acid dehydratase THERU_02575 PF00549 CoA-ligase THERU_02575 PF08442 ATP-grasp domain THERU_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THERU_02580 PF03466 LysR substrate binding domain THERU_02585 PF00009 Elongation factor Tu GTP binding domain THERU_02585 PF09107 Elongation factor SelB, winged helix THERU_02590 PF03841 L-seryl-tRNA selenium transferase THERU_02595 PF01841 Transglutaminase-like superfamily THERU_02605 PF01597 Glycine cleavage H-protein THERU_02610 PF04216 Protein involved in formate dehydrogenase formation THERU_02615 PF00080 Copper/zinc superoxide dismutase (SODC) THERU_02620 PF01292 Prokaryotic cytochrome b561 THERU_02625 PF09163 Formate dehydrogenase N, transmembrane THERU_02625 PF13247 4Fe-4S dicluster domain THERU_02630 PF00384 Molybdopterin oxidoreductase THERU_02630 PF01568 Molydopterin dinucleotide binding domain THERU_02635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THERU_02640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THERU_02645 PF02464 Competence-damaged protein THERU_02650 PF00132 Bacterial transferase hexapeptide (six repeats) THERU_02650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THERU_02655 PF00271 Helicase conserved C-terminal domain THERU_02655 PF02151 UvrB/uvrC motif THERU_02655 PF04851 Type III restriction enzyme, res subunit THERU_02655 PF12344 Ultra-violet resistance protein B THERU_02660 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THERU_02665 PF00696 Amino acid kinase family THERU_02665 PF01472 PUA domain THERU_02670 PF00583 Acetyltransferase (GNAT) family THERU_02675 PF03548 Outer membrane lipoprotein carrier protein LolA THERU_02680 PF01256 Carbohydrate kinase THERU_02680 PF03853 YjeF-related protein N-terminus THERU_02685 PF01551 Peptidase family M23 THERU_02690 PF01724 Domain of unknown function DUF29 THERU_02695 PF01743 Poly A polymerase head domain THERU_02695 PF01966 HD domain THERU_02695 PF12627 Probable RNA and SrmB- binding site of polymerase A THERU_02700 PF00313 'Cold-shock' DNA-binding domain THERU_02710 PF01230 HIT domain THERU_02715 PF00005 ABC transporter THERU_02720 PF00682 HMGL-like THERU_02720 PF08502 LeuA allosteric (dimerisation) domain THERU_02735 PF03060 Nitronate monooxygenase THERU_02740 PF00842 Alanine racemase, C-terminal domain THERU_02740 PF01168 Alanine racemase, N-terminal domain THERU_02745 PF00155 Aminotransferase class I and II THERU_02750 PF00202 Aminotransferase class-III THERU_02755 PF02542 YgbB family THERU_02760 PF09990 THERU_02760 THERU_02765 PF01678 Diaminopimelate epimerase THERU_02770 PF00990 GGDEF domain THERU_02775 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_02785 PF01068 ATP dependent DNA ligase domain THERU_02785 PF04675 DNA ligase N terminus THERU_02785 PF04679 ATP dependent DNA ligase C terminal region THERU_02790 PF07977 FabA-like domain THERU_02795 PF06745 KaiC THERU_02805 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THERU_02805 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THERU_02810 PF01078 Magnesium chelatase, subunit ChlI THERU_02810 PF13335 THERU_02810 THERU_02810 PF13541 Subunit ChlI of Mg-chelatase THERU_02815 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain THERU_02815 PF02785 Biotin carboxylase C-terminal domain THERU_02815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THERU_02820 PF06230 Protein of unknown function (DUF1009) THERU_02830 PF01709 Transcriptional regulator THERU_02835 PF00919 Uncharacterized protein family UPF0004 THERU_02835 PF04055 Radical SAM superfamily THERU_02840 PF00117 Glutamine amidotransferase class-I THERU_02840 PF06418 CTP synthase N-terminus THERU_02845 PF00205 Thiamine pyrophosphate enzyme, central domain THERU_02845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THERU_02845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THERU_02850 PF02391 MoaE protein THERU_02855 PF02618 YceG-like family THERU_02860 PF03652 Uncharacterised protein family (UPF0081) THERU_02865 PF11127 Protein of unknown function (DUF2892) THERU_02875 PF01134 Glucose inhibited division protein A THERU_02880 PF00005 ABC transporter THERU_02885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THERU_02900 PF13524 Glycosyl transferases group 1 THERU_02905 PF04474 THERU_02905 THERU_02910 PF04055 Radical SAM superfamily THERU_02910 PF13394 4Fe-4S single cluster domain THERU_02915 PF00672 HAMP domain THERU_02915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THERU_02940 PF15919 THERU_02940 THERU_02945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THERU_02950 PF04055 Radical SAM superfamily THERU_02955 PF03309 Type III pantothenate kinase THERU_02960 PF04055 Radical SAM superfamily THERU_02965 PF01098 THERU_02965 THERU_02970 PF02591 Putative zinc ribbon domain THERU_02975 PF00133 tRNA synthetases class I (I, L, M and V) THERU_02975 PF08264 Anticodon-binding domain of tRNA THERU_02980 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) THERU_02985 PF00437 Type II/IV secretion system protein THERU_02990 PF00482 Type II secretion system (T2SS), protein F THERU_02995 PF01960 ArgJ family THERU_03005 PF08843 Nucleotidyl transferase of unknown function (DUF1814) THERU_03010 PF00475 Imidazoleglycerol-phosphate dehydratase THERU_03015 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THERU_03020 PF01872 RibD C-terminal domain THERU_03025 PF01066 CDP-alcohol phosphatidyltransferase THERU_03030 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THERU_03030 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain THERU_03035 PF00005 ABC transporter THERU_03065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THERU_03065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THERU_03075 PF01327 Polypeptide deformylase THERU_03080 PF04026 SpoVG THERU_03085 PF05140 THERU_03085 THERU_03095 PF00288 GHMP kinases N terminal domain THERU_03105 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THERU_03105 PF14572 Phosphoribosyl synthetase-associated domain THERU_03110 PF01386 Ribosomal L25p family THERU_03110 PF14693 Ribosomal protein TL5, C-terminal domain THERU_03115 PF01195 Peptidyl-tRNA hydrolase THERU_03120 PF00593 TonB dependent receptor THERU_03120 PF07715 TonB-dependent Receptor Plug Domain THERU_03125 PF00488 MutS domain V THERU_03125 PF01713 Smr domain THERU_03130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THERU_03130 PF02874 ATP synthase alpha/beta family, beta-barrel domain THERU_03135 PF13174 Tetratricopeptide repeat THERU_03135 PF13432 Tetratricopeptide repeat THERU_03140 PF05673 Protein of unknown function (DUF815) THERU_03145 PF00005 ABC transporter THERU_03150 PF00528 Binding-protein-dependent transport system inner membrane component THERU_03155 PF00528 Binding-protein-dependent transport system inner membrane component THERU_03160 PF12849 PBP superfamily domain THERU_03170 PF02687 THERU_03170 THERU_03170 PF12704 MacB-like periplasmic core domain THERU_03175 PF16576 THERU_03175 THERU_03180 PF13561 Enoyl-(Acyl carrier protein) reductase THERU_03185 PF01791 DeoC/LacD family aldolase THERU_03195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase THERU_03200 PF02602 Uroporphyrinogen-III synthase HemD THERU_03210 PF01487 Type I 3-dehydroquinase THERU_03215 PF00764 Arginosuccinate synthase THERU_03220 PF00310 Glutamine amidotransferases class-II THERU_03220 PF01493 GXGXG motif THERU_03220 PF01645 Conserved region in glutamate synthase THERU_03220 PF04898 Glutamate synthase central domain THERU_03225 PF00994 Probable molybdopterin binding domain THERU_03230 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase THERU_03235 PF00696 Amino acid kinase family THERU_03235 PF01842 ACT domain THERU_03235 PF13840 ACT domain THERU_03245 PF00111 2Fe-2S iron-sulfur cluster binding domain THERU_03250 PF01765 Ribosome recycling factor THERU_03255 PF13231 THERU_03255 THERU_03260 PF01569 PAP2 superfamily THERU_03265 PF01842 ACT domain THERU_03265 PF10369 Small subunit of acetolactate synthase THERU_03270 PF01975 Survival protein SurE THERU_03275 PF00115 Cytochrome C and Quinol oxidase polypeptide I THERU_03280 PF01040 UbiA prenyltransferase family THERU_03285 PF02628 THERU_03285 THERU_03290 PF01242 6-pyruvoyl tetrahydropterin synthase THERU_03295 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THERU_03295 PF17147 THERU_03295 THERU_03300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THERU_03305 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THERU_03315 PF02684 THERU_03315 THERU_03320 PF00849 RNA pseudouridylate synthase THERU_03320 PF01479 S4 domain THERU_03330 PF00709 Adenylosuccinate synthetase THERU_03335 PF01926 50S ribosome-binding GTPase THERU_03335 PF13167 THERU_03335 THERU_03335 PF16360 THERU_03335 THERU_03340 PF17209 THERU_03340 THERU_03350 PF13277 YmdB-like protein THERU_03355 PF13561 Enoyl-(Acyl carrier protein) reductase THERU_03360 PF01702 Queuine tRNA-ribosyltransferase THERU_03365 PF13432 Tetratricopeptide repeat THERU_03375 PF00460 Flagella basal body rod protein THERU_03375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THERU_03380 PF02049 THERU_03380 THERU_03390 PF01052 Surface presentation of antigens (SPOA) THERU_03390 PF02154 Flagellar motor switch protein FliM THERU_03395 PF02811 PHP domain THERU_03395 PF14520 Helix-hairpin-helix domain THERU_03395 PF14716 Helix-hairpin-helix domain THERU_03395 PF14791 DNA polymerase beta thumb THERU_03400 PF00440 Bacterial regulatory proteins, tetR family THERU_03400 PF16295 THERU_03400 THERU_03405 PF04454 Encapsulating protein for peroxidase THERU_03410 PF02367 Uncharacterised P-loop hydrolase UPF0079 THERU_03415 PF01545 Cation efflux family THERU_03415 PF02579 Dinitrogenase iron-molybdenum cofactor THERU_03415 PF16916 THERU_03415 THERU_03420 PF04055 Radical SAM superfamily THERU_03420 PF16199 THERU_03420 THERU_03425 PF03447 Homoserine dehydrogenase, NAD binding domain THERU_03435 PF05683 Fumarase C-terminus THERU_03440 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_03445 PF01791 DeoC/LacD family aldolase THERU_03450 PF02036 SCP-2 sterol transfer family THERU_03455 PF00472 RF-1 domain THERU_03465 PF03625 Domain of unknown function DUF302 THERU_03470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THERU_03470 PF01872 RibD C-terminal domain THERU_03475 PF00551 Formyl transferase THERU_03475 PF02911 Formyl transferase, C-terminal domain THERU_03480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THERU_03485 PF00691 OmpA family THERU_03485 PF13677 THERU_03485 THERU_03490 PF01618 THERU_03490 THERU_03495 PF03938 Outer membrane protein (OmpH-like) THERU_03500 PF13419 Haloacid dehalogenase-like hydrolase THERU_03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THERU_03505 PF03466 LysR substrate binding domain THERU_03510 PF01451 Low molecular weight phosphotyrosine protein phosphatase THERU_03515 PF09958 THERU_03515 THERU_03520 PF00448 SRP54-type protein, GTPase domain THERU_03520 PF02881 SRP54-type protein, helical bundle domain THERU_03520 PF02978 Signal peptide binding domain THERU_03525 PF02239 Cytochrome D1 heme domain THERU_03530 PF02492 CobW/HypB/UreG, nucleotide-binding domain THERU_03530 PF07683 Cobalamin synthesis protein cobW C-terminal domain THERU_03535 PF00950 THERU_03535 THERU_03540 PF01297 Periplasmic solute binding protein family THERU_03555 PF00571 CBS domain THERU_03555 PF01743 Poly A polymerase head domain THERU_03555 PF02272 DHHA1 domain THERU_03560 PF01138 3' exoribonuclease family, domain 1 THERU_03560 PF03725 3' exoribonuclease family, domain 2 THERU_03565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THERU_03565 PF02874 ATP synthase alpha/beta family, beta-barrel domain THERU_03570 PF01850 PIN domain THERU_03575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase THERU_03580 PF03061 Thioesterase superfamily THERU_03585 PF04314 Protein of unknown function (DUF461) THERU_03590 PF09988 THERU_03590 THERU_03605 PF00231 ATP synthase THERU_03610 PF00448 SRP54-type protein, GTPase domain THERU_03610 PF02881 SRP54-type protein, helical bundle domain THERU_03615 PF00004 ATPase family associated with various cellular activities (AAA) THERU_03615 PF02190 ATP-dependent protease La (LON) domain THERU_03615 PF05362 Lon protease (S16) C-terminal proteolytic domain THERU_03620 PF04304 THERU_03620 THERU_03630 PF06508 Queuosine biosynthesis protein QueC THERU_03635 PF01925 THERU_03635 THERU_03650 PF03755 THERU_03650 THERU_03650 PF08340 THERU_03650 THERU_03660 PF00334 Nucleoside diphosphate kinase THERU_03665 PF00213 ATP synthase delta (OSCP) subunit THERU_03670 PF00430 ATP synthase B/B' CF(0) THERU_03675 PF00430 ATP synthase B/B' CF(0) THERU_03680 PF02502 Ribose/Galactose Isomerase THERU_03685 PF02637 GatB domain THERU_03685 PF02934 GatB/GatE catalytic domain THERU_03700 PF00117 Glutamine amidotransferase class-I THERU_03700 PF00958 GMP synthase C terminal domain THERU_03700 PF02540 NAD synthase THERU_03705 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THERU_03705 PF05221 S-adenosyl-L-homocysteine hydrolase THERU_03715 PF06195 THERU_03715 THERU_03720 PF06195 THERU_03720 THERU_03725 PF02421 Ferrous iron transport protein B THERU_03725 PF07664 THERU_03725 THERU_03725 PF07670 Nucleoside recognition THERU_03730 PF04023 FeoA domain THERU_03735 PF03744 THERU_03735 THERU_03745 PF00206 Lyase THERU_03745 PF14698 Argininosuccinate lyase C-terminal THERU_03750 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family THERU_03755 PF01648 4'-phosphopantetheinyl transferase superfamily THERU_03760 PF10411 Disulfide bond isomerase protein N-terminus THERU_03760 PF13098 Thioredoxin-like domain THERU_03765 PF00209 Sodium:neurotransmitter symporter family THERU_03770 PF02597 ThiS family THERU_03780 PF00005 ABC transporter THERU_03785 PF00528 Binding-protein-dependent transport system inner membrane component THERU_03790 PF03459 TOBE domain THERU_03795 PF13531 Bacterial extracellular solute-binding protein THERU_03800 PF02132 RecR protein THERU_03800 PF13662 Toprim domain THERU_03810 PF00583 Acetyltransferase (GNAT) family THERU_03815 PF03807 NADP oxidoreductase coenzyme F420-dependent THERU_03815 PF14748 Pyrroline-5-carboxylate reductase dimerisation THERU_03820 PF02578 Multi-copper polyphenol oxidoreductase laccase THERU_03825 PF02237 Biotin protein ligase C terminal domain THERU_03825 PF03099 Biotin/lipoate A/B protein ligase family THERU_03830 PF00669 Bacterial flagellin N-terminal helical region THERU_03830 PF00700 Bacterial flagellin C-terminal helical region THERU_03835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THERU_03835 PF07196 Flagellin hook IN motif THERU_03840 PF00218 Indole-3-glycerol phosphate synthase THERU_03845 PF01206 Sulfurtransferase TusA THERU_03845 PF11823 THERU_03845 THERU_03855 PF01934 Protein of unknown function DUF86 THERU_03860 PF01478 Type IV leader peptidase family THERU_03860 PF06750 THERU_03860 THERU_03865 PF00581 Rhodanese-like domain THERU_03870 PF01909 Nucleotidyltransferase domain THERU_03875 PF01934 Protein of unknown function DUF86 THERU_03885 PF01909 Nucleotidyltransferase domain THERU_03890 PF01934 Protein of unknown function DUF86 THERU_03920 PF00176 SNF2 family N-terminal domain THERU_03920 PF00271 Helicase conserved C-terminal domain THERU_03920 PF13091 PLD-like domain THERU_03925 PF01026 TatD related DNase THERU_03925 PF04055 Radical SAM superfamily THERU_03925 PF13394 4Fe-4S single cluster domain THERU_03930 PF00578 AhpC/TSA family THERU_03935 PF00364 Biotin-requiring enzyme THERU_03935 PF00682 HMGL-like THERU_03935 PF02436 Conserved carboxylase domain THERU_03940 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain THERU_03940 PF02785 Biotin carboxylase C-terminal domain THERU_03940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THERU_03945 PF02566 OsmC-like protein THERU_03955 PF14437 THERU_03955 THERU_03960 PF04250 THERU_03960 THERU_03970 PF06325 Ribosomal protein L11 methyltransferase (PrmA) THERU_03975 PF00633 Helix-hairpin-helix motif THERU_03975 PF00730 HhH-GPD superfamily base excision DNA repair protein THERU_03975 PF10576 Iron-sulfur binding domain of endonuclease III THERU_03980 PF01565 FAD binding domain THERU_03980 PF02913 FAD linked oxidases, C-terminal domain THERU_03990 PF14559 Tetratricopeptide repeat THERU_04000 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THERU_04005 PF03023 THERU_04005 THERU_04010 PF13489 Methyltransferase domain THERU_04015 PF05711 Macrocin-O-methyltransferase (TylF) THERU_04020 PF00733 Asparagine synthase THERU_04020 PF13537 Glutamine amidotransferase domain THERU_04025 PF00534 Glycosyl transferases group 1 THERU_04025 PF13439 Glycosyltransferase Family 4 THERU_04030 PF00535 Glycosyl transferase family 2 THERU_04035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THERU_04040 PF13472 GDSL-like Lipase/Acylhydrolase family THERU_04050 PF02543 Carbamoyltransferase THERU_04050 PF16861 THERU_04050 THERU_04060 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THERU_04060 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THERU_04060 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THERU_04075 PF00534 Glycosyl transferases group 1 THERU_04075 PF13477 Glycosyl transferase 4-like THERU_04080 PF00953 Glycosyl transferase family 4 THERU_04085 PF06144 DNA polymerase III, delta subunit THERU_04090 PF01008 Initiation factor 2 subunit family THERU_04095 PF13085 2Fe-2S iron-sulfur cluster binding domain THERU_04095 PF13183 4Fe-4S dicluster domain THERU_04100 PF13144 SAF-like THERU_04105 PF00563 EAL domain THERU_04120 PF00133 tRNA synthetases class I (I, L, M and V) THERU_04120 PF08264 Anticodon-binding domain of tRNA THERU_04120 PF10458 Valyl tRNA synthetase tRNA binding arm THERU_04125 PF01043 SecA preprotein cross-linking domain THERU_04125 PF07516 SecA Wing and Scaffold domain THERU_04125 PF07517 SecA DEAD-like domain THERU_04130 PF01300 Telomere recombination THERU_04135 PF00919 Uncharacterized protein family UPF0004 THERU_04135 PF01938 TRAM domain THERU_04135 PF04055 Radical SAM superfamily THERU_04140 PF02687 THERU_04140 THERU_04140 PF12704 MacB-like periplasmic core domain THERU_04150 PF04238 THERU_04150 THERU_04155 PF01464 Transglycosylase SLT domain THERU_04160 PF01475 Ferric uptake regulator family THERU_04165 PF13450 NAD(P)-binding Rossmann-like domain THERU_04170 PF00216 Bacterial DNA-binding protein THERU_04175 PF03968 OstA-like protein THERU_04180 PF06835 Lipopolysaccharide-assembly, LptC-related THERU_04185 PF08282 haloacid dehalogenase-like hydrolase THERU_04190 PF03710 Glutamate-ammonia ligase adenylyltransferase THERU_04190 PF08335 GlnD PII-uridylyltransferase THERU_04200 PF07724 AAA domain (Cdc48 subfamily) THERU_04200 PF10431 C-terminal, D2-small domain, of ClpB protein THERU_04210 PF01312 FlhB HrpN YscU SpaS Family THERU_04220 PF00480 ROK family THERU_04230 PF01544 CorA-like Mg2+ transporter protein THERU_04235 PF00175 Oxidoreductase NAD-binding domain THERU_04235 PF00970 Oxidoreductase FAD-binding domain THERU_04240 PF00691 OmpA family THERU_04245 PF00009 Elongation factor Tu GTP binding domain THERU_04245 PF00679 Elongation factor G C-terminus THERU_04245 PF03144 Elongation factor Tu domain 2 THERU_04245 PF06421 GTP-binding protein LepA C-terminus THERU_04250 PF02597 ThiS family THERU_04255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THERU_04265 PF02481 DNA recombination-mediator protein A THERU_04270 PF00270 DEAD/DEAH box helicase THERU_04270 PF13307 Helicase C-terminal domain THERU_04275 PF01230 HIT domain THERU_04280 PF02545 Maf-like protein THERU_04285 PF07690 Major Facilitator Superfamily THERU_04295 PF13393 Histidyl-tRNA synthetase THERU_04300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit THERU_04305 PF03065 Glycosyl hydrolase family 57 THERU_04305 PF12055 THERU_04305 THERU_04310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THERU_04315 PF00582 Universal stress protein family THERU_04320 PF00204 DNA gyrase B THERU_04320 PF00986 DNA gyrase B subunit, carboxyl terminus THERU_04320 PF01751 Toprim domain THERU_04320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THERU_04330 PF00004 ATPase family associated with various cellular activities (AAA) THERU_04330 PF02861 Clp amino terminal domain THERU_04330 PF07724 AAA domain (Cdc48 subfamily) THERU_04330 PF10431 C-terminal, D2-small domain, of ClpB protein THERU_04335 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_04340 PF03706 THERU_04340 THERU_04345 PF11127 Protein of unknown function (DUF2892) THERU_04375 PF03787 RAMP superfamily THERU_04380 PF12469 CRISPR-associated protein THERU_04390 PF09700 CRISPR-associated protein (Cas_Cmr3) THERU_04395 PF03787 RAMP superfamily THERU_04405 PF09701 CRISPR-associated protein (Cas_Cmr5) THERU_04410 PF03787 RAMP superfamily THERU_04420 PF09455 CRISPR-associated (Cas) DxTHG family THERU_04445 PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 THERU_04450 PF09704 CRISPR-associated protein (Cas_Cas5) THERU_04450 PF09706 THERU_04450 THERU_04455 PF00271 Helicase conserved C-terminal domain THERU_04460 PF01930 Domain of unknown function DUF83 THERU_04465 PF01867 CRISPR associated protein Cas1 THERU_04470 PF09827 CRISPR associated protein Cas2 THERU_04495 PF02548 Ketopantoate hydroxymethyltransferase THERU_04500 PF00437 Type II/IV secretion system protein THERU_04500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THERU_04505 PF03061 Thioesterase superfamily THERU_04515 PF00707 Translation initiation factor IF-3, C-terminal domain THERU_04515 PF05198 Translation initiation factor IF-3, N-terminal domain THERU_04525 PF02405 THERU_04525 THERU_04530 PF01264 Chorismate synthase THERU_04535 PF00830 Ribosomal L28 family THERU_04540 PF01548 THERU_04540 THERU_04555 PF06146 THERU_04555 THERU_04555 PF11563 Protoglobin THERU_04560 PF01571 Aminomethyltransferase folate-binding domain THERU_04560 PF08669 Glycine cleavage T-protein C-terminal barrel domain THERU_04575 PF01926 50S ribosome-binding GTPase THERU_04575 PF06071 Protein of unknown function (DUF933) THERU_04580 PF00534 Glycosyl transferases group 1 THERU_04580 PF13439 Glycosyltransferase Family 4 THERU_04585 PF00753 Metallo-beta-lactamase superfamily THERU_04590 PF00037 4Fe-4S binding domain THERU_04590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THERU_04590 PF13510 2Fe-2S iron-sulfur cluster binding domain THERU_04595 PF00990 GGDEF domain THERU_04600 PF05573 NosL THERU_04600 PF08220 DeoR-like helix-turn-helix domain THERU_04605 PF02146 Sir2 family THERU_04610 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein THERU_04615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THERU_04615 PF13426 PAS domain THERU_04620 PF00072 Response regulator receiver domain THERU_04620 PF00158 Sigma-54 interaction domain THERU_04620 PF02954 Bacterial regulatory protein, Fis family THERU_04625 PF00355 Rieske [2Fe-2S] domain THERU_04630 PF00384 Molybdopterin oxidoreductase THERU_04630 PF01568 Molydopterin dinucleotide binding domain THERU_04645 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_04650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THERU_04650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THERU_04650 PF04324 BFD-like [2Fe-2S] binding domain THERU_04650 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_04655 PF13379 NMT1-like family THERU_04660 PF00528 Binding-protein-dependent transport system inner membrane component THERU_04665 PF00005 ABC transporter THERU_04670 PF00384 Molybdopterin oxidoreductase THERU_04670 PF01568 Molydopterin dinucleotide binding domain THERU_04670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THERU_04675 PF02602 Uroporphyrinogen-III synthase HemD THERU_04680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THERU_04685 PF00515 Tetratricopeptide repeat THERU_04685 PF07719 Tetratricopeptide repeat THERU_04685 PF13424 Tetratricopeptide repeat THERU_04690 PF00753 Metallo-beta-lactamase superfamily THERU_04695 PF03625 Domain of unknown function DUF302 THERU_04700 PF02872 5'-nucleotidase, C-terminal domain THERU_04705 PF00034 Cytochrome c THERU_04715 PF08770 Sulphur oxidation protein SoxZ THERU_04720 PF13501 Sulfur oxidation protein SoxY THERU_04725 PF13098 Thioredoxin-like domain THERU_04735 PF00850 Histone deacetylase domain THERU_04740 PF00438 S-adenosylmethionine synthetase, N-terminal domain THERU_04740 PF02772 S-adenosylmethionine synthetase, central domain THERU_04740 PF02773 S-adenosylmethionine synthetase, C-terminal domain THERU_04750 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase THERU_04755 PF00156 Phosphoribosyl transferase domain THERU_04755 PF13537 Glutamine amidotransferase domain THERU_04760 PF00793 DAHP synthetase I family THERU_04765 PF00011 Hsp20/alpha crystallin family THERU_04775 PF04055 Radical SAM superfamily THERU_04775 PF12544 Lysine-2,3-aminomutase THERU_04775 PF13394 4Fe-4S single cluster domain THERU_04780 PF03631 THERU_04780 THERU_04785 PF01541 GIY-YIG catalytic domain THERU_04785 PF02151 UvrB/uvrC motif THERU_04785 PF08459 UvrC Helix-hairpin-helix N-terminal THERU_04790 PF01964 ThiC family THERU_04795 PF01455 HupF/HypC family THERU_04800 PF01924 Hydrogenase formation hypA family THERU_04805 PF00378 Enoyl-CoA hydratase/isomerase family THERU_04805 PF00551 Formyl transferase THERU_04805 PF02911 Formyl transferase, C-terminal domain THERU_04810 PF00440 Bacterial regulatory proteins, tetR family THERU_04815 PF00005 ABC transporter THERU_04825 PF01891 Cobalt uptake substrate-specific transmembrane region THERU_04830 PF13557 THERU_04830 THERU_04840 PF10670 THERU_04840 THERU_04845 PF01402 Ribbon-helix-helix protein, copG family THERU_04845 PF08753 NikR C terminal nickel binding domain THERU_04850 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THERU_04850 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THERU_04855 PF00374 Nickel-dependent hydrogenase THERU_04860 PF01292 Prokaryotic cytochrome b561 THERU_04865 PF01750 Hydrogenase maturation protease THERU_04870 PF04809 HupH hydrogenase expression protein, C-terminal conserved region THERU_04875 PF00708 Acylphosphatase THERU_04875 PF01300 Telomere recombination THERU_04875 PF07503 HypF finger THERU_04880 PF01155 Hydrogenase expression/synthesis hypA family THERU_04885 PF00586 AIR synthase related protein, N-terminal domain THERU_04885 PF02769 AIR synthase related protein, C-terminal domain THERU_04890 PF00374 Nickel-dependent hydrogenase THERU_04895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THERU_04895 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THERU_04900 PF02492 CobW/HypB/UreG, nucleotide-binding domain THERU_04915 PF07849 THERU_04915 THERU_04920 PF07849 THERU_04920 THERU_04925 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THERU_04925 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THERU_04935 PF01750 Hydrogenase maturation protease THERU_04945 PF00515 Tetratricopeptide repeat THERU_04945 PF13181 Tetratricopeptide repeat THERU_04950 PF00355 Rieske [2Fe-2S] domain THERU_04950 PF01106 NifU-like domain THERU_04955 PF01436 NHL repeat THERU_04960 PF02830 V4R domain THERU_04965 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_04970 PF01747 ATP-sulfurylase THERU_04970 PF14306 PUA-like domain THERU_04975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THERU_04980 PF01925 THERU_04980 THERU_05000 PF00158 Sigma-54 interaction domain THERU_05015 PF13610 THERU_05015 THERU_05025 PF09958 THERU_05025 THERU_05030 PF02171 Piwi domain THERU_05040 PF00271 Helicase conserved C-terminal domain THERU_05040 PF04851 Type III restriction enzyme, res subunit THERU_05045 PF09704 CRISPR-associated protein (Cas_Cas5) THERU_05050 PF05107 THERU_05050 THERU_05055 PF09484 THERU_05055 THERU_05060 PF01881 CRISPR associated protein Cas6 THERU_05065 PF13614 AAA domain THERU_05080 PF00795 Carbon-nitrogen hydrolase THERU_05085 PF07726 ATPase family associated with various cellular activities (AAA) THERU_05090 PF00291 Pyridoxal-phosphate dependent enzyme THERU_05095 PF01964 ThiC family THERU_05100 PF01541 GIY-YIG catalytic domain THERU_05100 PF02151 UvrB/uvrC motif THERU_05100 PF08459 UvrC Helix-hairpin-helix N-terminal THERU_05110 PF01724 Domain of unknown function DUF29 THERU_05135 PF06114 Domain of unknown function (DUF955) THERU_05135 PF12844 Helix-turn-helix domain THERU_05150 PF06094 AIG2-like family THERU_05160 PF09958 THERU_05160 THERU_05170 PF07282 THERU_05170 THERU_05175 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_05180 PF01119 DNA mismatch repair protein, C-terminal domain THERU_05180 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THERU_05185 PF00977 Histidine biosynthesis protein THERU_05190 PF00293 NUDIX domain THERU_05200 PF00227 Proteasome subunit THERU_05215 PF02824 TGS domain THERU_05215 PF04607 Region found in RelA / SpoT proteins THERU_05215 PF13291 ACT domain THERU_05215 PF13328 HD domain THERU_05220 PF00085 Thioredoxin THERU_05225 PF00849 RNA pseudouridylate synthase THERU_05225 PF01479 S4 domain THERU_05230 PF00174 Oxidoreductase molybdopterin binding domain THERU_05235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THERU_05235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THERU_05240 PF01368 DHH family THERU_05240 PF02272 DHHA1 domain THERU_05245 PF01225 Mur ligase family, catalytic domain THERU_05245 PF02875 Mur ligase family, glutamate ligase domain THERU_05245 PF08245 Mur ligase middle domain THERU_05250 PF02656 THERU_05250 THERU_05270 PF13086 AAA domain THERU_05275 PF08373 THERU_05275 THERU_05275 PF13087 AAA domain THERU_05280 PF00330 Aconitase family (aconitate hydratase) THERU_05280 PF00694 Aconitase C-terminal domain THERU_05285 PF00056 lactate/malate dehydrogenase, NAD binding domain THERU_05285 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THERU_05290 PF14559 Tetratricopeptide repeat THERU_05295 PF02092 THERU_05295 THERU_05300 PF00391 PEP-utilising enzyme, mobile domain THERU_05300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THERU_05300 PF02896 PEP-utilising enzyme, TIM barrel domain THERU_05305 PF11104 Type IV pilus assembly protein PilM; THERU_05325 PF00919 Uncharacterized protein family UPF0004 THERU_05325 PF04055 Radical SAM superfamily THERU_05330 PF05866 Endodeoxyribonuclease RusA THERU_05335 PF01476 LysM domain THERU_05335 PF01551 Peptidase family M23 THERU_05340 PF00708 Acylphosphatase THERU_05345 PF02424 ApbE family THERU_05355 PF04205 FMN-binding domain THERU_05365 PF00581 Rhodanese-like domain THERU_05370 PF03190 Protein of unknown function, DUF255 THERU_05375 PF00206 Lyase THERU_05375 PF10397 Adenylosuccinate lyase C-terminus THERU_05380 PF08543 Phosphomethylpyrimidine kinase THERU_05390 PF01042 Endoribonuclease L-PSP THERU_05395 PF02091 Glycyl-tRNA synthetase alpha subunit THERU_05400 PF01564 Spermine/spermidine synthase THERU_05400 PF17284 THERU_05400 THERU_05405 PF13664 THERU_05405 THERU_05410 PF00701 Dihydrodipicolinate synthetase family THERU_05415 PF00795 Carbon-nitrogen hydrolase THERU_05415 PF02540 NAD synthase THERU_05420 PF00290 Tryptophan synthase alpha chain THERU_05425 PF02566 OsmC-like protein THERU_05430 PF02915 Rubrerythrin THERU_05435 PF12007 Protein of unknown function (DUF3501) THERU_05445 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain THERU_05445 PF02785 Biotin carboxylase C-terminal domain THERU_05445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THERU_05450 PF00146 NADH dehydrogenase THERU_05455 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THERU_05455 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THERU_05460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THERU_05465 PF05036 Sporulation related domain THERU_05465 PF13174 Tetratricopeptide repeat THERU_05465 PF13432 Tetratricopeptide repeat THERU_05470 PF05036 Sporulation related domain THERU_05475 PF00750 tRNA synthetases class I (R) THERU_05475 PF03485 Arginyl tRNA synthetase N terminal domain THERU_05475 PF05746 DALR anticodon binding domain THERU_05480 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THERU_05480 PF02843 Phosphoribosylglycinamide synthetase, C domain THERU_05480 PF02844 Phosphoribosylglycinamide synthetase, N domain THERU_05485 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THERU_05485 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase THERU_05495 PF02348 Cytidylyltransferase THERU_05500 PF00266 Aminotransferase class-V THERU_05505 PF10609 ParA/MinD ATPase like THERU_05510 PF00929 Exonuclease THERU_05515 PF00348 Polyprenyl synthetase THERU_05520 PF13533 Biotin-lipoyl like THERU_05525 PF02321 Outer membrane efflux protein THERU_05530 PF13098 Thioredoxin-like domain THERU_05540 PF00692 dUTPase THERU_05545 PF01063 Aminotransferase class IV THERU_05555 PF01904 Protein of unknown function DUF72 THERU_05560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THERU_05560 PF00306 ATP synthase alpha/beta chain, C terminal domain THERU_05560 PF02874 ATP synthase alpha/beta family, beta-barrel domain THERU_05565 PF00025 ADP-ribosylation factor family THERU_05575 PF00072 Response regulator receiver domain THERU_05575 PF00486 Transcriptional regulatory protein, C terminal THERU_05580 PF00512 His Kinase A (phospho-acceptor) domain THERU_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THERU_05585 PF04977 Septum formation initiator THERU_05590 PF00113 Enolase, C-terminal TIM barrel domain THERU_05590 PF03952 Enolase, N-terminal domain THERU_05595 PF02581 Thiamine monophosphate synthase/TENI THERU_05600 PF13245 Part of AAA domain THERU_05600 PF13361 UvrD-like helicase C-terminal domain THERU_05605 PF00510 Cytochrome c oxidase subunit III THERU_05615 PF00116 Cytochrome C oxidase subunit II, periplasmic domain THERU_05615 PF02790 Cytochrome C oxidase subunit II, transmembrane domain THERU_05620 PF00115 Cytochrome C and Quinol oxidase polypeptide I THERU_05630 PF00318 Ribosomal protein S2 THERU_05635 PF01025 GrpE THERU_05645 PF02594 Uncharacterised ACR, YggU family COG1872 THERU_05650 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THERU_05650 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THERU_05655 PF01406 tRNA synthetases class I (C) catalytic domain THERU_05655 PF09190 DALR domain THERU_05660 PF00994 Probable molybdopterin binding domain THERU_05660 PF03453 MoeA N-terminal region (domain I and II) THERU_05660 PF03454 MoeA C-terminal region (domain IV) THERU_05665 PF00330 Aconitase family (aconitate hydratase) THERU_05670 PF00004 ATPase family associated with various cellular activities (AAA) THERU_05670 PF01434 Peptidase family M41 THERU_05675 PF00990 GGDEF domain THERU_05675 PF08447 PAS fold THERU_05675 PF13188 PAS domain THERU_05675 PF13426 PAS domain THERU_05680 PF02552 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit THERU_05680 PF03099 Biotin/lipoate A/B protein ligase family THERU_05685 PF04608 Phosphatidylglycerophosphatase A THERU_05690 PF09312 SurA N-terminal domain THERU_05695 PF13145 PPIC-type PPIASE domain THERU_05695 PF13624 SurA N-terminal domain THERU_05705 PF05697 Bacterial trigger factor protein (TF) THERU_05705 PF05698 Bacterial trigger factor protein (TF) C-terminus THERU_05710 PF00574 Clp protease THERU_05715 PF06689 ClpX C4-type zinc finger THERU_05715 PF07724 AAA domain (Cdc48 subfamily) THERU_05715 PF10431 C-terminal, D2-small domain, of ClpB protein THERU_05720 PF07728 AAA domain (dynein-related subfamily) THERU_05725 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel THERU_05730 PF00534 Glycosyl transferases group 1 THERU_05730 PF13439 Glycosyltransferase Family 4 THERU_05735 PF01522 Polysaccharide deacetylase THERU_05745 PF05567 Neisseria PilC beta-propeller domain THERU_05750 PF07963 Prokaryotic N-terminal methylation motif THERU_05755 PF07963 Prokaryotic N-terminal methylation motif THERU_05760 PF07963 Prokaryotic N-terminal methylation motif THERU_05770 PF02516 Oligosaccharyl transferase STT3 subunit THERU_05775 PF07963 Prokaryotic N-terminal methylation motif THERU_05780 PF07963 Prokaryotic N-terminal methylation motif THERU_05790 PF00588 SpoU rRNA Methylase family THERU_05790 PF08032 RNA 2'-O ribose methyltransferase substrate binding THERU_05795 PF02445 Quinolinate synthetase A protein THERU_05800 PF00132 Bacterial transferase hexapeptide (six repeats) THERU_05800 PF12804 MobA-like NTP transferase domain THERU_05810 PF00596 Class II Aldolase and Adducin N-terminal domain THERU_05815 PF01724 Domain of unknown function DUF29 THERU_05820 PF01121 Dephospho-CoA kinase THERU_05825 PF01171 PP-loop family THERU_05830 PF02597 ThiS family THERU_05835 PF09941 THERU_05835 THERU_05840 PF09941 THERU_05840 THERU_05845 PF02036 SCP-2 sterol transfer family THERU_05850 PF00158 Sigma-54 interaction domain THERU_05850 PF02954 Bacterial regulatory protein, Fis family THERU_05850 PF13188 PAS domain THERU_05860 PF03775 Septum formation inhibitor MinC, C-terminal domain THERU_05865 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THERU_05870 PF03776 Septum formation topological specificity factor MinE THERU_05875 PF13242 HAD-hyrolase-like THERU_05875 PF13344 Haloacid dehalogenase-like hydrolase THERU_05880 PF02142 MGS-like domain THERU_05880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THERU_05885 PF01551 Peptidase family M23 THERU_05890 PF04028 THERU_05890 THERU_05895 PF00291 Pyridoxal-phosphate dependent enzyme THERU_05900 PF01972 Serine dehydrogenase proteinase THERU_05905 PF13429 Tetratricopeptide repeat THERU_05905 PF13432 Tetratricopeptide repeat THERU_05925 PF00534 Glycosyl transferases group 1 THERU_05925 PF11997 THERU_05925 THERU_05930 PF16933 THERU_05930 THERU_05935 PF03537 Glycoside-hydrolase family GH114 THERU_05945 PF00133 tRNA synthetases class I (I, L, M and V) THERU_05945 PF13603 Leucyl-tRNA synthetase, Domain 2 THERU_05950 PF01592 NifU-like N terminal domain THERU_05955 PF02568 Thiamine biosynthesis protein (ThiI) THERU_05960 PF01206 Sulfurtransferase TusA THERU_05965 PF08984 Domain of unknown function (DUF1858) THERU_05970 PF01106 NifU-like domain THERU_05975 PF01488 Shikimate / quinate 5-dehydrogenase THERU_05975 PF08501 Shikimate dehydrogenase substrate binding domain THERU_05980 PF00762 Ferrochelatase THERU_05985 PF00977 Histidine biosynthesis protein THERU_05990 PF00563 EAL domain THERU_05990 PF00990 GGDEF domain THERU_05995 PF04055 Radical SAM superfamily THERU_06000 PF04930 THERU_06000 THERU_06005 PF02441 Flavoprotein THERU_06010 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THERU_06010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THERU_06015 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THERU_06015 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THERU_06020 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THERU_06025 PF07690 Major Facilitator Superfamily THERU_06035 PF08745 UPF0278 family THERU_06040 PF01521 Iron-sulphur cluster biosynthesis THERU_06050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THERU_06060 PF00072 Response regulator receiver domain THERU_06060 PF00486 Transcriptional regulatory protein, C terminal THERU_06065 PF13481 AAA domain THERU_06070 PF04055 Radical SAM superfamily THERU_06070 PF06463 Molybdenum Cofactor Synthesis C THERU_06070 PF13353 4Fe-4S single cluster domain THERU_06075 PF02621 Menaquinone biosynthesis THERU_06080 PF09423 PhoD-like phosphatase THERU_06080 PF16655 THERU_06080 THERU_06085 PF03544 Gram-negative bacterial TonB protein C-terminal THERU_06090 PF02472 Biopolymer transport protein ExbD/TolR THERU_06095 PF01618 THERU_06095 THERU_06100 PF00593 TonB dependent receptor THERU_06100 PF07715 TonB-dependent Receptor Plug Domain THERU_06110 PF00202 Aminotransferase class-III THERU_06115 PF01979 Amidohydrolase family THERU_06120 PF00905 Penicillin binding protein transpeptidase domain THERU_06120 PF00912 Transglycosylase THERU_06125 PF00132 Bacterial transferase hexapeptide (six repeats) THERU_06130 PF13155 Toprim-like THERU_06140 PF00035 Double-stranded RNA binding motif THERU_06140 PF14622 Ribonuclease-III-like THERU_06145 PF00109 Beta-ketoacyl synthase, N-terminal domain THERU_06145 PF02801 Beta-ketoacyl synthase, C-terminal domain THERU_06150 PF00550 Phosphopantetheine attachment site THERU_06160 PF03023 THERU_06160 THERU_06165 PF01649 Ribosomal protein S20 THERU_06170 PF00034 Cytochrome c THERU_06175 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_06180 PF01694 Rhomboid family THERU_06185 PF00924 Mechanosensitive ion channel THERU_06190 PF00107 Zinc-binding dehydrogenase THERU_06190 PF08240 Alcohol dehydrogenase GroES-like domain THERU_06195 PF00990 GGDEF domain THERU_06200 PF01565 FAD binding domain THERU_06200 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THERU_06205 PF01820 D-ala D-ala ligase N-terminus THERU_06205 PF07478 D-ala D-ala ligase C-terminus THERU_06215 PF02491 SHS2 domain inserted in FTSA THERU_06215 PF14450 Cell division protein FtsA THERU_06220 PF00091 Tubulin/FtsZ family, GTPase domain THERU_06220 PF12327 FtsZ family, C-terminal domain THERU_06225 PF03739 THERU_06225 THERU_06230 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 THERU_06230 PF13181 Tetratricopeptide repeat THERU_06230 PF13432 Tetratricopeptide repeat THERU_06230 PF14559 Tetratricopeptide repeat THERU_06235 PF00582 Universal stress protein family THERU_06240 PF00459 Inositol monophosphatase family THERU_06245 PF02875 Mur ligase family, glutamate ligase domain THERU_06245 PF08245 Mur ligase middle domain THERU_06250 PF00572 Ribosomal protein L13 THERU_06255 PF00380 Ribosomal protein S9/S16 THERU_06260 PF01118 Semialdehyde dehydrogenase, NAD binding domain THERU_06260 PF02774 Semialdehyde dehydrogenase, dimerisation domain THERU_06265 PF03029 Conserved hypothetical ATP binding protein THERU_06270 PF14332 THERU_06270 THERU_06275 PF03259 Roadblock/LC7 domain THERU_06280 PF03773 THERU_06280 THERU_06285 PF00122 E1-E2 ATPase THERU_06285 PF00403 Heavy-metal-associated domain THERU_06285 PF00702 haloacid dehalogenase-like hydrolase THERU_06290 PF04539 Sigma-70 region 3 THERU_06290 PF04542 Sigma-70 region 2 THERU_06290 PF04545 Sigma-70, region 4 THERU_06295 PF01632 Ribosomal protein L35 THERU_06305 PF00355 Rieske [2Fe-2S] domain THERU_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_06310 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THERU_06315 PF07883 Cupin domain THERU_06320 PF09527 THERU_06320 THERU_06325 PF04055 Radical SAM superfamily THERU_06325 PF06968 Biotin and Thiamin Synthesis associated domain THERU_06330 PF03099 Biotin/lipoate A/B protein ligase family THERU_06335 PF03033 Glycosyltransferase family 28 N-terminal domain THERU_06335 PF04101 Glycosyltransferase family 28 C-terminal domain THERU_06340 PF02698 DUF218 domain THERU_06345 PF02472 Biopolymer transport protein ExbD/TolR THERU_06350 PF01618 THERU_06350 THERU_06355 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 THERU_06360 PF00300 Histidine phosphatase superfamily (branch 1) THERU_06365 PF00266 Aminotransferase class-V THERU_06370 PF01658 Myo-inositol-1-phosphate synthase THERU_06375 PF06146 THERU_06375 THERU_06380 PF02463 RecF/RecN/SMC N terminal domain THERU_06390 PF02374 Anion-transporting ATPase THERU_06400 PF00034 Cytochrome c THERU_06405 PF01177 Asp/Glu/Hydantoin racemase THERU_06410 PF02580 D-Tyr-tRNA(Tyr) deacylase THERU_06415 PF01935 Domain of unknown function DUF87 THERU_06415 PF13091 PLD-like domain THERU_06425 PF05275 THERU_06425 THERU_06435 PF13489 Methyltransferase domain THERU_06445 PF00117 Glutamine amidotransferase class-I THERU_06445 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THERU_06450 PF00905 Penicillin binding protein transpeptidase domain THERU_06450 PF03717 Penicillin-binding Protein dimerisation domain THERU_06455 PF13500 AAA domain THERU_06460 PF01343 Peptidase family S49 THERU_06465 PF07396 Phosphate-selective porin O and P THERU_06470 PF07963 Prokaryotic N-terminal methylation motif THERU_06470 PF08334 Type II secretion system (T2SS), protein G THERU_06475 PF07963 Prokaryotic N-terminal methylation motif THERU_06480 PF07963 Prokaryotic N-terminal methylation motif THERU_06485 PF00482 Type II secretion system (T2SS), protein F THERU_06490 PF02108 THERU_06490 THERU_06495 PF01706 FliG C-terminal domain THERU_06495 PF14841 FliG middle domain THERU_06495 PF14842 FliG N-terminal domain THERU_06500 PF00133 tRNA synthetases class I (I, L, M and V) THERU_06500 PF08264 Anticodon-binding domain of tRNA THERU_06510 PF02552 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit THERU_06515 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THERU_06515 PF17147 THERU_06515 THERU_06520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THERU_06525 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THERU_06535 PF02492 CobW/HypB/UreG, nucleotide-binding domain THERU_06535 PF07683 Cobalamin synthesis protein cobW C-terminal domain THERU_06540 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains THERU_06540 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THERU_06545 PF10070 THERU_06545 THERU_06550 PF00543 Nitrogen regulatory protein P-II THERU_06560 PF00916 THERU_06560 THERU_06560 PF01740 STAS domain THERU_06565 PF01245 Ribosomal protein L19 THERU_06570 PF01351 Ribonuclease HII THERU_06575 PF01795 MraW methylase family THERU_06595 PF02219 Methylenetetrahydrofolate reductase THERU_06605 PF08734 THERU_06605 THERU_06610 PF00270 DEAD/DEAH box helicase THERU_06610 PF00271 Helicase conserved C-terminal domain THERU_06620 PF00924 Mechanosensitive ion channel THERU_06625 PF13602 Zinc-binding dehydrogenase THERU_06630 PF08442 ATP-grasp domain THERU_06630 PF16114 THERU_06630 THERU_06635 PF00549 CoA-ligase THERU_06635 PF02629 CoA binding domain THERU_06640 PF04976 THERU_06640 THERU_06645 PF13247 4Fe-4S dicluster domain THERU_06650 PF13682 Chemoreceptor zinc-binding domain THERU_06655 PF05685 Putative restriction endonuclease THERU_06660 PF00384 Molybdopterin oxidoreductase THERU_06660 PF01568 Molydopterin dinucleotide binding domain THERU_06660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THERU_06670 PF09335 THERU_06670 THERU_06675 PF12706 Beta-lactamase superfamily domain THERU_06680 PF13370 4Fe-4S single cluster domain THERU_06685 PF13370 4Fe-4S single cluster domain THERU_06690 PF00549 CoA-ligase THERU_06690 PF02629 CoA binding domain THERU_06695 PF00355 Rieske [2Fe-2S] domain THERU_06700 PF00032 Cytochrome b(C-terminal)/b6/petD THERU_06700 PF00033 Cytochrome b(N-terminal)/b6/petB THERU_06705 PF00034 Cytochrome c THERU_06710 PF00633 Helix-hairpin-helix motif THERU_06710 PF00730 HhH-GPD superfamily base excision DNA repair protein THERU_06720 PF00403 Heavy-metal-associated domain THERU_06725 PF12804 MobA-like NTP transferase domain THERU_06730 PF13181 Tetratricopeptide repeat THERU_06730 PF13432 Tetratricopeptide repeat THERU_06735 PF00563 EAL domain THERU_06740 PF00027 Cyclic nucleotide-binding domain THERU_06740 PF00571 CBS domain THERU_06740 PF03445 THERU_06740 THERU_06740 PF10335 THERU_06740 THERU_06745 PF02325 THERU_06745 THERU_06750 PF00474 Sodium:solute symporter family THERU_06755 PF13937 THERU_06755 THERU_06760 PF00501 AMP-binding enzyme THERU_06760 PF13193 AMP-binding enzyme C-terminal domain THERU_06760 PF16177 THERU_06760 THERU_06765 PF01724 Domain of unknown function DUF29 THERU_06790 PF00263 THERU_06790 THERU_06790 PF03958 Bacterial type II/III secretion system short domain THERU_06800 PF01464 Transglycosylase SLT domain THERU_06805 PF00677 Lumazine binding domain THERU_06810 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THERU_06815 PF00528 Binding-protein-dependent transport system inner membrane component THERU_06825 PF13460 NADH(P)-binding THERU_06830 PF01717 Cobalamin-independent synthase, Catalytic domain THERU_06830 PF08267 Cobalamin-independent synthase, N-terminal domain THERU_06835 PF01695 IstB-like ATP binding protein THERU_06840 PF01464 Transglycosylase SLT domain THERU_06845 PF00155 Aminotransferase class I and II THERU_06850 PF00460 Flagella basal body rod protein THERU_06850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THERU_06850 PF07559 Flagellar basal body protein FlaE THERU_06855 PF03963 THERU_06855 THERU_06860 PF04014 Antidote-toxin recognition MazE THERU_06865 PF01861 Protein of unknown function DUF43 THERU_06870 PF05430 S-adenosyl-L-methionine-dependent methyltransferase THERU_06875 PF01950 Fructose-1,6-bisphosphatase THERU_06885 PF00270 DEAD/DEAH box helicase THERU_06885 PF01131 DNA topoisomerase THERU_06885 PF01751 Toprim domain THERU_06895 PF01066 CDP-alcohol phosphatidyltransferase THERU_06900 PF00166 Chaperonin 10 Kd subunit THERU_06905 PF00118 TCP-1/cpn60 chaperonin family THERU_06910 PF03448 MgtE intracellular N domain THERU_06915 PF00156 Phosphoribosyl transferase domain THERU_06920 PF03819 MazG nucleotide pyrophosphohydrolase domain THERU_06925 PF00152 tRNA synthetases class II (D, K and N) THERU_06925 PF01336 OB-fold nucleic acid binding domain THERU_06925 PF02938 GAD domain THERU_06930 PF00923 Transaldolase THERU_06935 PF13192 Thioredoxin domain THERU_06940 PF04166 Pyridoxal phosphate biosynthetic protein PdxA THERU_06950 PF01168 Alanine racemase, N-terminal domain THERU_06960 PF06508 Queuosine biosynthesis protein QueC THERU_06965 PF03649 THERU_06965 THERU_06970 PF00586 AIR synthase related protein, N-terminal domain THERU_06970 PF02769 AIR synthase related protein, C-terminal domain THERU_06975 PF01252 THERU_06975 THERU_06985 PF00111 2Fe-2S iron-sulfur cluster binding domain THERU_06985 PF01799 [2Fe-2S] binding domain THERU_06990 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase THERU_06995 PF00881 Nitroreductase family THERU_07000 PF00083 Sugar (and other) transporter THERU_07010 PF01869 BadF/BadG/BcrA/BcrD ATPase family THERU_07015 PF09989 THERU_07015 THERU_07025 PF04551 GcpE protein THERU_07030 PF00162 Phosphoglycerate kinase THERU_07040 PF00158 Sigma-54 interaction domain THERU_07040 PF02954 Bacterial regulatory protein, Fis family THERU_07040 PF13185 GAF domain THERU_07045 PF00117 Glutamine amidotransferase class-I THERU_07050 PF13242 HAD-hyrolase-like THERU_07050 PF13344 Haloacid dehalogenase-like hydrolase THERU_07055 PF07642 THERU_07055 THERU_07060 PF00909 Ammonium Transporter Family THERU_07065 PF00120 Glutamine synthetase, catalytic domain THERU_07065 PF03951 Glutamine synthetase, beta-Grasp domain THERU_07070 PF00543 Nitrogen regulatory protein P-II THERU_07075 PF02535 THERU_07075 THERU_07080 PF00156 Phosphoribosyl transferase domain THERU_07085 PF00694 Aconitase C-terminal domain THERU_07090 PF09958 THERU_07090 THERU_07095 PF00712 DNA polymerase III beta subunit, N-terminal domain THERU_07095 PF02767 DNA polymerase III beta subunit, central domain THERU_07095 PF02768 DNA polymerase III beta subunit, C-terminal domain THERU_07100 PF02347 Glycine cleavage system P-protein THERU_07110 PF00579 tRNA synthetases class I (W and Y) THERU_07110 PF01479 S4 domain THERU_07115 PF00132 Bacterial transferase hexapeptide (six repeats) THERU_07120 PF00753 Metallo-beta-lactamase superfamily THERU_07125 PF00535 Glycosyl transferase family 2 THERU_07135 PF05681 THERU_07135 THERU_07140 PF13519 von Willebrand factor type A domain THERU_07145 PF02366 THERU_07145 THERU_07150 PF01039 Carboxyl transferase domain THERU_07160 PF01209 ubiE/COQ5 methyltransferase family THERU_07165 PF01016 Ribosomal L27 protein THERU_07170 PF00829 Ribosomal prokaryotic L21 protein THERU_07180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THERU_07180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THERU_07185 PF07992 Pyridine nucleotide-disulphide oxidoreductase THERU_07185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THERU_07190 PF12870 Lumazine-binding domain THERU_07195 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THERU_07200 PF01098 THERU_07200 THERU_07205 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THERU_07210 PF01979 Amidohydrolase family THERU_07220 PF00571 CBS domain THERU_07220 PF01380 SIS domain THERU_07225 PF00719 Inorganic pyrophosphatase THERU_07250 PF00009 Elongation factor Tu GTP binding domain THERU_07250 PF03143 Elongation factor Tu C-terminal domain THERU_07250 PF03144 Elongation factor Tu domain 2 THERU_07255 PF00471 Ribosomal protein L33 THERU_07265 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THERU_07270 PF00467 KOW motif THERU_07270 PF02357 Transcription termination factor nusG THERU_07270 PF07009 Protein of unknown function (DUF1312) THERU_07275 PF00298 Ribosomal protein L11, RNA binding domain THERU_07275 PF03946 Ribosomal protein L11, N-terminal domain THERU_07280 PF00687 Ribosomal protein L1p/L10e family THERU_07285 PF00466 Ribosomal protein L10 THERU_07290 PF00542 Ribosomal protein L7/L12 C-terminal domain THERU_07290 PF16320 THERU_07290 THERU_07300 PF00562 RNA polymerase Rpb2, domain 6 THERU_07300 PF04560 RNA polymerase Rpb2, domain 7 THERU_07300 PF04563 RNA polymerase beta subunit THERU_07300 PF04565 RNA polymerase Rpb2, domain 3 THERU_07300 PF10385 RNA polymerase beta subunit external 1 domain THERU_07305 PF00623 RNA polymerase Rpb1, domain 2 THERU_07305 PF04983 RNA polymerase Rpb1, domain 3 THERU_07305 PF04997 RNA polymerase Rpb1, domain 1 THERU_07305 PF04998 RNA polymerase Rpb1, domain 5 THERU_07305 PF05000 RNA polymerase Rpb1, domain 4 THERU_07310 PF00164 Ribosomal protein S12/S23 THERU_07315 PF00177 Ribosomal protein S7p/S5e THERU_07320 PF00009 Elongation factor Tu GTP binding domain THERU_07320 PF00679 Elongation factor G C-terminus THERU_07320 PF03144 Elongation factor Tu domain 2 THERU_07320 PF03764 Elongation factor G, domain IV THERU_07320 PF14492 Elongation Factor G, domain II THERU_07325 PF00009 Elongation factor Tu GTP binding domain THERU_07325 PF03143 Elongation factor Tu C-terminal domain THERU_07325 PF03144 Elongation factor Tu domain 2 THERU_07330 PF00338 Ribosomal protein S10p/S20e THERU_07335 PF00297 Ribosomal protein L3 THERU_07340 PF00573 Ribosomal protein L4/L1 family THERU_07345 PF00276 Ribosomal protein L23 THERU_07350 PF00181 Ribosomal Proteins L2, RNA binding domain THERU_07350 PF03947 Ribosomal Proteins L2, C-terminal domain THERU_07355 PF00203 Ribosomal protein S19 THERU_07360 PF00237 Ribosomal protein L22p/L17e THERU_07365 PF00189 Ribosomal protein S3, C-terminal domain THERU_07365 PF07650 KH domain THERU_07370 PF00252 Ribosomal protein L16p/L10e THERU_07375 PF00831 Ribosomal L29 protein THERU_07380 PF00366 Ribosomal protein S17 THERU_07385 PF02635 DsrE/DsrF-like family THERU_07395 PF00890 FAD binding domain THERU_07395 PF02910 Fumarate reductase flavoprotein C-term THERU_07400 PF02222 ATP-grasp domain THERU_07405 PF02446 4-alpha-glucanotransferase THERU_07420 PF00005 ABC transporter THERU_07420 PF12399 Branched-chain amino acid ATP-binding cassette transporter THERU_07425 PF01131 DNA topoisomerase THERU_07425 PF01751 Toprim domain THERU_07430 PF01746 tRNA (Guanine-1)-methyltransferase THERU_07435 PF00589 Phage integrase family THERU_07435 PF02899 Phage integrase, N-terminal SAM-like domain THERU_07455 PF01555 DNA methylase THERU_07460 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ THERU_07465 PF00899 ThiF family THERU_07470 PF02675 S-adenosylmethionine decarboxylase THERU_07475 PF03602 Conserved hypothetical protein 95 THERU_07480 PF01467 Cytidylyltransferase THERU_07485 PF01597 Glycine cleavage H-protein THERU_07490 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel THERU_07495 PF04055 Radical SAM superfamily THERU_07495 PF13394 4Fe-4S single cluster domain THERU_07500 PF04468 THERU_07500 THERU_07505 PF13177 DNA polymerase III, delta subunit THERU_07510 PF01227 GTP cyclohydrolase I THERU_07515 PF00456 Transketolase, thiamine diphosphate binding domain THERU_07515 PF02779 Transketolase, pyrimidine binding domain THERU_07515 PF02780 Transketolase, C-terminal domain THERU_07520 PF02130 Uncharacterized protein family UPF0054 THERU_07525 PF02562 PhoH-like protein THERU_07530 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THERU_07530 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THERU_07535 PF07690 Major Facilitator Superfamily THERU_07545 PF12169 DNA polymerase III subunits gamma and tau domain III THERU_07545 PF13177 DNA polymerase III, delta subunit THERU_07550 PF00795 Carbon-nitrogen hydrolase THERU_07555 PF00892 EamA-like transporter family THERU_07560 PF03372 Endonuclease/Exonuclease/phosphatase family THERU_07565 PF00155 Aminotransferase class I and II THERU_07575 PF01926 50S ribosome-binding GTPase THERU_07580 PF02875 Mur ligase family, glutamate ligase domain THERU_07580 PF08245 Mur ligase middle domain THERU_07585 PF00575 S1 RNA binding domain THERU_07585 PF00773 RNB domain THERU_07585 PF08206 Ribonuclease B OB domain THERU_07590 PF00465 Iron-containing alcohol dehydrogenase THERU_07595 PF01258 Prokaryotic dksA/traR C4-type zinc finger THERU_07600 PF01197 Ribosomal protein L31 THERU_07605 PF00472 RF-1 domain THERU_07605 PF03462 PCRF domain THERU_07610 PF01807 CHC2 zinc finger THERU_07610 PF08275 DNA primase catalytic core, N-terminal domain THERU_07610 PF13155 Toprim-like THERU_07615 PF01416 tRNA pseudouridine synthase THERU_07625 PF04325 Protein of unknown function (DUF465) THERU_07630 PF13561 Enoyl-(Acyl carrier protein) reductase THERU_07645 PF01967 MoaC family THERU_07650 PF01139 tRNA-splicing ligase RtcB THERU_07655 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THERU_07655 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THERU_07665 PF01411 tRNA synthetases class II (A) THERU_07665 PF02272 DHHA1 domain THERU_07665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THERU_07675 PF09876 THERU_07675 THERU_07680 PF00258 Flavodoxin THERU_07685 PF05958 tRNA (Uracil-5-)-methyltransferase THERU_07690 PF00575 S1 RNA binding domain THERU_07690 PF13184 NusA-like KH domain THERU_07695 PF02576 Uncharacterised BCR, YhbC family COG0779 THERU_07695 PF17384 THERU_07695 THERU_07700 PF10087 THERU_07700 THERU_07705 PF01782 RimM N-terminal domain THERU_07705 PF05239 PRC-barrel domain THERU_07710 PF06803 THERU_07710 THERU_07715 PF00528 Binding-protein-dependent transport system inner membrane component THERU_07720 PF01965 DJ-1/PfpI family THERU_07725 PF10672 S-adenosylmethionine-dependent methyltransferase THERU_07730 PF00005 ABC transporter THERU_07730 PF00664 ABC transporter transmembrane region THERU_07735 PF00226 DnaJ domain THERU_07735 PF01556 DnaJ C terminal domain THERU_07740 PF02552 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit THERU_07745 PF12800 4Fe-4S binding domain THERU_07750 PF00155 Aminotransferase class I and II THERU_07755 PF08534 Redoxin THERU_07765 PF01103 Surface antigen THERU_07765 PF07244 Surface antigen variable number repeat THERU_07770 PF00483 Nucleotidyl transferase THERU_07775 PF02353 Mycolic acid cyclopropane synthetase THERU_07780 PF00005 ABC transporter THERU_07785 PF02597 ThiS family THERU_07790 PF00591 Glycosyl transferase family, a/b domain THERU_07790 PF02885 Glycosyl transferase family, helical bundle domain THERU_07795 PF02621 Menaquinone biosynthesis THERU_07805 PF07883 Cupin domain THERU_07810 PF04389 Peptidase family M28 THERU_07815 PF01063 Aminotransferase class IV THERU_07820 PF01783 Ribosomal L32p protein family THERU_07825 PF02504 Fatty acid synthesis protein THERU_07830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal THERU_07830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III THERU_07835 PF01225 Mur ligase family, catalytic domain THERU_07835 PF02875 Mur ligase family, glutamate ligase domain THERU_07835 PF08245 Mur ligase middle domain THERU_07840 PF02321 Outer membrane efflux protein THERU_07845 PF16576 THERU_07845 THERU_07850 PF00873 AcrB/AcrD/AcrF family THERU_07855 PF00563 EAL domain THERU_07855 PF08668 HDOD domain THERU_07860 PF01578 THERU_07860 THERU_07865 PF01281 Ribosomal protein L9, N-terminal domain THERU_07865 PF03948 Ribosomal protein L9, C-terminal domain THERU_07870 PF01084 Ribosomal protein S18 THERU_07875 PF00436 Single-strand binding protein family THERU_07880 PF01250 Ribosomal protein S6 THERU_07885 PF01502 Phosphoribosyl-AMP cyclohydrolase THERU_07885 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THERU_07890 PF14464 Prokaryotic homologs of the JAB domain THERU_07895 PF01118 Semialdehyde dehydrogenase, NAD binding domain THERU_07895 PF02774 Semialdehyde dehydrogenase, dimerisation domain THERU_07900 PF01180 Dihydroorotate dehydrogenase THERU_07910 PF13414 TPR repeat THERU_07915 PF00117 Glutamine amidotransferase class-I THERU_07920 PF00753 Metallo-beta-lactamase superfamily THERU_07920 PF07521 RNA-metabolising metallo-beta-lactamase THERU_07920 PF10996 Beta-Casp domain THERU_07925 PF01467 Cytidylyltransferase THERU_07930 PF01926 50S ribosome-binding GTPase THERU_07930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THERU_07935 PF00149 Calcineurin-like phosphoesterase THERU_07940 PF00072 Response regulator receiver domain THERU_07940 PF00486 Transcriptional regulatory protein, C terminal THERU_07945 PF00364 Biotin-requiring enzyme THERU_07945 PF00682 HMGL-like THERU_07945 PF02436 Conserved carboxylase domain THERU_07950 PF01132 Elongation factor P (EF-P) OB domain THERU_07950 PF08207 Elongation factor P (EF-P) KOW-like domain THERU_07950 PF09285 Elongation factor P, C-terminal THERU_07955 PF00364 Biotin-requiring enzyme THERU_07960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THERU_07965 PF01509 TruB family pseudouridylate synthase (N terminal domain) THERU_07965 PF09157 Pseudouridine synthase II TruB, C-terminal THERU_07965 PF16198 THERU_07965 THERU_07970 PF00140 Sigma-70 factor, region 1 THERU_07970 PF04539 Sigma-70 region 3 THERU_07970 PF04542 Sigma-70 region 2 THERU_07970 PF04545 Sigma-70, region 4 THERU_07975 PF00595 PDZ domain (Also known as DHR or GLGF) THERU_07975 PF13180 PDZ domain THERU_07975 PF13365 Trypsin-like peptidase domain THERU_07980 PF08241 Methyltransferase domain THERU_07985 PF12697 Alpha/beta hydrolase family THERU_08000 PF01725 Ham1 family THERU_08005 PF01488 Shikimate / quinate 5-dehydrogenase THERU_08005 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THERU_08010 PF01037 AsnC family THERU_08020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THERU_08025 PF00696 Amino acid kinase family THERU_08030 PF01555 DNA methylase THERU_08045 PF00682 HMGL-like THERU_08045 PF08502 LeuA allosteric (dimerisation) domain THERU_08050 PF01571 Aminomethyltransferase folate-binding domain THERU_08050 PF08669 Glycine cleavage T-protein C-terminal barrel domain THERU_08055 PF01494 FAD binding domain THERU_08065 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase THERU_08070 PF01208 Uroporphyrinogen decarboxylase (URO-D) THERU_08075 PF01724 Domain of unknown function DUF29 THERU_08080 PF01724 Domain of unknown function DUF29 THERU_08085 PF01724 Domain of unknown function DUF29 THERU_08090 PF00877 NlpC/P60 family THERU_08090 PF12913 SH3 domain of the SH3b1 type THERU_08100 PF01790 THERU_08100 THERU_08110 PF00815 Histidinol dehydrogenase THERU_08115 PF03783 Curli production assembly/transport component CsgG THERU_08120 PF05690 Thiazole biosynthesis protein ThiG THERU_08125 PF01593 Flavin containing amine oxidoreductase THERU_08130 PF13241 Putative NAD(P)-binding THERU_08130 PF14824 Sirohaem biosynthesis protein central THERU_08135 PF09376 NurA domain THERU_08140 PF03547 THERU_08140 THERU_08150 PF00557 Metallopeptidase family M24 THERU_08150 PF01321 Creatinase/Prolidase N-terminal domain THERU_08155 PF04552 Sigma-54, DNA binding domain THERU_08155 PF04963 Sigma-54 factor, core binding domain THERU_08160 PF02457 DisA bacterial checkpoint controller nucleotide-binding THERU_08165 PF00809 Pterin binding enzyme THERU_08170 PF02355 Protein export membrane protein THERU_08170 PF07549 SecD/SecF GG Motif THERU_08175 PF04055 Radical SAM superfamily THERU_08175 PF13353 4Fe-4S single cluster domain THERU_08180 PF01875 Memo-like protein THERU_08185 PF01724 Domain of unknown function DUF29 THERU_08190 PF01588 Putative tRNA binding domain THERU_08190 PF03147 Ferredoxin-fold anticodon binding domain THERU_08190 PF03483 B3/4 domain THERU_08190 PF03484 tRNA synthetase B5 domain THERU_08200 PF01812 5-formyltetrahydrofolate cyclo-ligase family THERU_08205 PF00013 KH domain THERU_08205 PF01966 HD domain THERU_08205 PF12072 THERU_08205 THERU_08210 PF00488 MutS domain V THERU_08210 PF01624 MutS domain I THERU_08210 PF05188 MutS domain II THERU_08210 PF05190 MutS family domain IV THERU_08210 PF05192 MutS domain III THERU_08215 PF00877 NlpC/P60 family THERU_08220 PF01066 CDP-alcohol phosphatidyltransferase THERU_08230 PF01475 Ferric uptake regulator family THERU_08235 PF01329 Pterin 4 alpha carbinolamine dehydratase THERU_08240 PF08241 Methyltransferase domain THERU_08250 PF11146 THERU_08250 THERU_08255 PF01312 FlhB HrpN YscU SpaS Family THERU_08260 PF01311 THERU_08260 THERU_08265 PF01313 THERU_08265 THERU_08270 PF00813 THERU_08270 THERU_08280 PF03748 THERU_08280 THERU_08285 PF01523 Putative modulator of DNA gyrase THERU_08300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THERU_08305 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase THERU_08305 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal THERU_08305 PF13288 DXP reductoisomerase C-terminal domain THERU_08310 PF00425 chorismate binding enzyme THERU_08315 PF01661 Macro domain THERU_08320 PF00771 FHIPEP family THERU_08325 PF00448 SRP54-type protein, GTPase domain THERU_08330 PF13614 AAA domain THERU_08335 PF09936 SAM-dependent RNA methyltransferase THERU_08340 PF00953 Glycosyl transferase family 4 THERU_08345 PF01202 Shikimate kinase THERU_08350 PF00348 Polyprenyl synthetase THERU_08355 PF02463 RecF/RecN/SMC N terminal domain THERU_08355 PF06470 SMC proteins Flexible Hinge Domain THERU_08360 PF00004 ATPase family associated with various cellular activities (AAA) THERU_08360 PF02151 UvrB/uvrC motif THERU_08360 PF02861 Clp amino terminal domain THERU_08360 PF07724 AAA domain (Cdc48 subfamily) THERU_08360 PF10431 C-terminal, D2-small domain, of ClpB protein THERU_08365 PF13247 4Fe-4S dicluster domain THERU_08370 PF01435 Peptidase family M48 THERU_08370 PF13176 Tetratricopeptide repeat THERU_08375 PF02630 SCO1/SenC THERU_08380 PF02527 rRNA small subunit methyltransferase G THERU_08385 PF08704 tRNA methyltransferase complex GCD14 subunit THERU_08390 PF02635 DsrE/DsrF-like family THERU_08410 PF02470 THERU_08410 THERU_08420 PF00027 Cyclic nucleotide-binding domain THERU_08420 PF13545 Crp-like helix-turn-helix domain THERU_08425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THERU_08425 PF16321 THERU_08425 THERU_08430 PF05433 THERU_08430 THERU_08435 PF01588 Putative tRNA binding domain THERU_08440 PF00180 Isocitrate/isopropylmalate dehydrogenase THERU_08445 PF01926 50S ribosome-binding GTPase THERU_08445 PF07650 KH domain THERU_08450 PF01297 Periplasmic solute binding protein family THERU_08455 PF00005 ABC transporter THERU_08460 PF00950 THERU_08460 THERU_08465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THERU_08475 PF00925 GTP cyclohydrolase II THERU_08475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THERU_08480 PF01018 GTP1/OBG THERU_08480 PF01926 50S ribosome-binding GTPase THERU_08485 PF00633 Helix-hairpin-helix motif THERU_08485 PF00730 HhH-GPD superfamily base excision DNA repair protein THERU_08485 PF10576 Iron-sulfur binding domain of endonuclease III THERU_08490 PF01206 Sulfurtransferase TusA THERU_08495 PF02635 DsrE/DsrF-like family THERU_08500 PF00248 Aldo/keto reductase family