locus-tag class description Thein_0001 PF00308 Bacterial dnaA protein Thein_0001 PF08299 Bacterial dnaA protein helix-turn-helix Thein_0001 PF11638 DnaA N-terminal domain Thein_0002 PF01565 FAD binding domain Thein_0002 PF02913 FAD linked oxidases, C-terminal domain Thein_0003 PF07715 TonB-dependent Receptor Plug Domain Thein_0003 PF00593 TonB dependent receptor Thein_0005 PF00989 PAS fold Thein_0005 PF00512 His Kinase A (phospho-acceptor) domain Thein_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0006 PF00920 Dehydratase family Thein_0007 PF01106 NifU-like domain Thein_0008 PF01192 RNA polymerase Rpb6 Thein_0009 PF00684 DnaJ central domain Thein_0009 PF01556 DnaJ C terminal domain Thein_0009 PF00226 DnaJ domain Thein_0010 PF01967 MoaC family Thein_0011 PF01258 Prokaryotic dksA/traR C4-type zinc finger Thein_0014 PF00072 Response regulator receiver domain Thein_0015 PF01370 NAD dependent epimerase/dehydratase family Thein_0016 PF00072 Response regulator receiver domain Thein_0016 PF02954 Bacterial regulatory protein, Fis family Thein_0016 PF00158 Sigma-54 interaction domain Thein_0017 PF01048 Phosphorylase superfamily Thein_0018 PF10150 Ribonuclease E/G family Thein_0018 PF00575 S1 RNA binding domain Thein_0023 PF07690 Major Facilitator Superfamily Thein_0024 PF02896 PEP-utilising enzyme, TIM barrel domain Thein_0024 PF00391 PEP-utilising enzyme, mobile domain Thein_0024 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thein_0028 PF00155 Aminotransferase class I and II Thein_0029 PF00202 Aminotransferase class-III Thein_0031 PF06968 Biotin and Thiamin Synthesis associated domain Thein_0031 PF04055 Radical SAM superfamily Thein_0033 PF01784 NIF3 (NGG1p interacting factor 3) Thein_0034 PF00140 Sigma-70 factor, region 1.2 Thein_0034 PF04545 Sigma-70, region 4 Thein_0034 PF04542 Sigma-70 region 2 Thein_0034 PF04539 Sigma-70 region 3 Thein_0034 PF03979 Sigma-70 factor, region 1.1 Thein_0034 PF04546 Sigma-70, non-essential region Thein_0035 PF10410 DnaB-helicase binding domain of primase Thein_0035 PF01807 CHC2 zinc finger Thein_0035 PF08275 DNA primase catalytic core, N-terminal domain Thein_0036 PF01713 Smr domain Thein_0036 PF00488 MutS domain V Thein_0037 PF01165 Ribosomal protein S21 Thein_0038 PF01300 Telomere recombination Thein_0038 PF03481 Putative GTP-binding controlling metal-binding Thein_0040 PF01189 16S rRNA methyltransferase RsmB/F Thein_0040 PF01029 NusB family Thein_0042 PF01209 ubiE/COQ5 methyltransferase family Thein_0043 PF00155 Aminotransferase class I and II Thein_0044 PF07670 Nucleoside recognition Thein_0045 PF00731 AIR carboxylase Thein_0047 PF01812 5-formyltetrahydrofolate cyclo-ligase family Thein_0048 PF02254 TrkA-N domain Thein_0048 PF00999 Sodium/hydrogen exchanger family Thein_0049 PF00342 Phosphoglucose isomerase Thein_0055 PF01206 Sulfurtransferase TusA Thein_0057 PF03466 LysR substrate binding domain Thein_0057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thein_0060 PF00202 Aminotransferase class-III Thein_0064 PF00682 HMGL-like Thein_0065 PF00245 Alkaline phosphatase Thein_0067 PF09350 Domain of unknown function (DUF1992) Thein_0070 PF01259 SAICAR synthetase Thein_0073 PF02308 MgtC family Thein_0074 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thein_0074 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thein_0074 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thein_0074 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thein_0076 PF02457 DisA bacterial checkpoint controller nucleotide-binding Thein_0077 PF00809 Pterin binding enzyme Thein_0078 PF01434 Peptidase family M41 Thein_0078 PF06480 FtsH Extracellular Thein_0078 PF17862 AAA+ lid domain Thein_0078 PF00004 ATPase family associated with various cellular activities (AAA) Thein_0079 PF02954 Bacterial regulatory protein, Fis family Thein_0079 PF00158 Sigma-54 interaction domain Thein_0079 PF00072 Response regulator receiver domain Thein_0083 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Thein_0083 PF02390 Putative methyltransferase Thein_0084 PF00588 SpoU rRNA Methylase family Thein_0084 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thein_0085 PF00625 Guanylate kinase Thein_0086 PF04025 Domain of unknown function (DUF370) Thein_0087 PF08340 Domain of unknown function (DUF1732) Thein_0087 PF03755 YicC-like family, N-terminal region Thein_0089 PF00691 OmpA family Thein_0091 PF02685 Glucokinase Thein_0093 PF03023 Lipid II flippase MurJ Thein_0098 PF01475 Ferric uptake regulator family Thein_0100 PF16591 Helical bimodular sensor domain Thein_0100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thein_0100 PF00672 HAMP domain Thein_0101 PF00675 Insulinase (Peptidase family M16) Thein_0101 PF05193 Peptidase M16 inactive domain Thein_0102 PF10609 NUBPL iron-transfer P-loop NTPase Thein_0104 PF02754 Cysteine-rich domain Thein_0106 PF03747 ADP-ribosylglycohydrolase Thein_0114 PF01264 Chorismate synthase Thein_0116 PF00027 Cyclic nucleotide-binding domain Thein_0116 PF13545 Crp-like helix-turn-helix domain Thein_0117 PF00814 Glycoprotease family Thein_0118 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0119 PF12911 N-terminal TM domain of oligopeptide transport permease C Thein_0119 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0120 PF00011 Hsp20/alpha crystallin family Thein_0121 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thein_0121 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thein_0124 PF13597 Anaerobic ribonucleoside-triphosphate reductase Thein_0124 PF03477 ATP cone domain Thein_0125 PF01297 Zinc-uptake complex component A periplasmic Thein_0126 PF00483 Nucleotidyl transferase Thein_0126 PF01066 CDP-alcohol phosphatidyltransferase Thein_0128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0128 PF00512 His Kinase A (phospho-acceptor) domain Thein_0129 PF00698 Acyl transferase domain Thein_0130 PF01597 Glycine cleavage H-protein Thein_0131 PF06463 Molybdenum Cofactor Synthesis C Thein_0131 PF04055 Radical SAM superfamily Thein_0133 PF03966 Trm112p-like protein Thein_0134 PF00873 AcrB/AcrD/AcrF family Thein_0136 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thein_0138 PF17932 Tetracyclin repressor-like, C-terminal domain Thein_0138 PF00440 Bacterial regulatory proteins, tetR family Thein_0142 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thein_0142 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thein_0143 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thein_0143 PF02142 MGS-like domain Thein_0143 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thein_0145 PF00575 S1 RNA binding domain Thein_0146 PF01343 Peptidase family S49 Thein_0147 PF02541 Ppx/GppA phosphatase family Thein_0148 PF00478 IMP dehydrogenase / GMP reductase domain Thein_0148 PF00571 CBS domain Thein_0149 PF00482 Type II secretion system (T2SS), protein F Thein_0151 PF01556 DnaJ C terminal domain Thein_0151 PF00226 DnaJ domain Thein_0152 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Thein_0152 PF02390 Putative methyltransferase Thein_0153 PF00501 AMP-binding enzyme Thein_0153 PF16177 Acetyl-coenzyme A synthetase N-terminus Thein_0153 PF13193 AMP-binding enzyme C-terminal domain Thein_0154 PF14535 AMP-binding enzyme C-terminal domain Thein_0154 PF00501 AMP-binding enzyme Thein_0156 PF00533 BRCA1 C Terminus (BRCT) domain Thein_0156 PF01653 NAD-dependent DNA ligase adenylation domain Thein_0156 PF03120 NAD-dependent DNA ligase OB-fold domain Thein_0156 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thein_0156 PF12826 Helix-hairpin-helix motif Thein_0157 PF02618 YceG-like family Thein_0166 PF03772 Competence protein Thein_0166 PF00753 Metallo-beta-lactamase superfamily Thein_0169 PF02355 Protein export membrane protein Thein_0169 PF07549 SecD/SecF GG Motif Thein_0170 PF05362 Lon protease (S16) C-terminal proteolytic domain Thein_0170 PF13654 AAA domain Thein_0173 PF03449 Transcription elongation factor, N-terminal Thein_0173 PF01272 Transcription elongation factor, GreA/GreB, C-term Thein_0174 PF01040 UbiA prenyltransferase family Thein_0175 PF02441 Flavoprotein Thein_0176 PF00075 RNase H Thein_0177 PF10414 Sirohaem synthase dimerisation region Thein_0177 PF14824 Sirohaem biosynthesis protein central Thein_0177 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thein_0179 PF03748 Flagellar basal body-associated protein FliL Thein_0180 PF02154 Flagellar motor switch protein FliM Thein_0180 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thein_0181 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thein_0183 PF00813 FliP family Thein_0184 PF01313 Bacterial export proteins, family 3 Thein_0185 PF01311 Bacterial export proteins, family 1 Thein_0186 PF01312 FlhB HrpN YscU SpaS Family Thein_0187 PF00771 FHIPEP family Thein_0188 PF00448 SRP54-type protein, GTPase domain Thein_0189 PF10609 NUBPL iron-transfer P-loop NTPase Thein_0190 PF04542 Sigma-70 region 2 Thein_0190 PF04545 Sigma-70, region 4 Thein_0190 PF04539 Sigma-70 region 3 Thein_0191 PF00072 Response regulator receiver domain Thein_0197 PF02082 Transcriptional regulator Thein_0199 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thein_0200 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Thein_0200 PF01676 Metalloenzyme superfamily Thein_0201 PF00890 FAD binding domain Thein_0201 PF02910 Fumarate reductase flavoprotein C-term Thein_0202 PF00909 Ammonium Transporter Family Thein_0203 PF00543 Nitrogen regulatory protein P-II Thein_0205 PF00114 Pilin (bacterial filament) Thein_0205 PF07963 Prokaryotic N-terminal methylation motif Thein_0206 PF16360 GTP-binding GTPase Middle Region Thein_0206 PF13167 GTP-binding GTPase N-terminal Thein_0206 PF01926 50S ribosome-binding GTPase Thein_0207 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thein_0207 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thein_0208 PF01368 DHH family Thein_0208 PF02272 DHHA1 domain Thein_0209 PF02033 Ribosome-binding factor A Thein_0211 PF11987 Translation-initiation factor 2 Thein_0211 PF11987 Translation-initiation factor 2 Thein_0211 PF04760 Translation initiation factor IF-2, N-terminal region Thein_0211 PF00009 Elongation factor Tu GTP binding domain Thein_0211 PF04760 Translation initiation factor IF-2, N-terminal region Thein_0211 PF00009 Elongation factor Tu GTP binding domain Thein_0213 PF00575 S1 RNA binding domain Thein_0213 PF13184 NusA-like KH domain Thein_0213 PF08529 NusA N-terminal domain Thein_0214 PF02576 RimP N-terminal domain Thein_0214 PF17384 RimP C-terminal SH3 domain Thein_0229 PF18019 HD domain Thein_0229 PF00270 DEAD/DEAH box helicase Thein_0229 PF00271 Helicase conserved C-terminal domain Thein_0232 PF01867 CRISPR associated protein Cas1 Thein_0233 PF09827 CRISPR associated protein Cas2 Thein_0236 PF01925 Sulfite exporter TauE/SafE Thein_0243 PF17876 Cold shock domain Thein_0243 PF00773 RNB domain Thein_0243 PF08206 Ribonuclease B OB domain Thein_0243 PF00575 S1 RNA binding domain Thein_0245 PF01230 HIT domain Thein_0246 PF01139 tRNA-splicing ligase RtcB Thein_0248 PF01327 Polypeptide deformylase Thein_0249 PF11862 Domain of unknown function (DUF3382) Thein_0249 PF02653 Branched-chain amino acid transport system / permease component Thein_0250 PF02653 Branched-chain amino acid transport system / permease component Thein_0251 PF13458 Periplasmic binding protein Thein_0253 PF00180 Isocitrate/isopropylmalate dehydrogenase Thein_0254 PF01964 Radical SAM ThiC family Thein_0256 PF09820 Predicted AAA-ATPase Thein_0256 PF08011 PD-(D/E)XK nuclease superfamily Thein_0257 PF02142 MGS-like domain Thein_0257 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thein_0257 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thein_0259 PF00933 Glycosyl hydrolase family 3 N terminal domain Thein_0260 PF00512 His Kinase A (phospho-acceptor) domain Thein_0260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0260 PF00989 PAS fold Thein_0262 PF07478 D-ala D-ala ligase C-terminus Thein_0262 PF01820 D-ala D-ala ligase N-terminus Thein_0264 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thein_0264 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thein_0265 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thein_0266 PF04493 Endonuclease V Thein_0267 PF08245 Mur ligase middle domain Thein_0267 PF01225 Mur ligase family, catalytic domain Thein_0267 PF02875 Mur ligase family, glutamate ligase domain Thein_0269 PF13298 DNA polymerase Ligase (LigD) Thein_0269 PF04679 ATP dependent DNA ligase C terminal region Thein_0269 PF01068 ATP dependent DNA ligase domain Thein_0270 PF10609 NUBPL iron-transfer P-loop NTPase Thein_0271 PF00990 Diguanylate cyclase, GGDEF domain Thein_0271 PF00072 Response regulator receiver domain Thein_0272 PF00623 RNA polymerase Rpb1, domain 2 Thein_0272 PF05000 RNA polymerase Rpb1, domain 4 Thein_0272 PF04997 RNA polymerase Rpb1, domain 1 Thein_0272 PF04983 RNA polymerase Rpb1, domain 3 Thein_0272 PF04998 RNA polymerase Rpb1, domain 5 Thein_0273 PF10385 RNA polymerase beta subunit external 1 domain Thein_0273 PF00562 RNA polymerase Rpb2, domain 6 Thein_0273 PF04565 RNA polymerase Rpb2, domain 3 Thein_0273 PF04561 RNA polymerase Rpb2, domain 2 Thein_0273 PF04563 RNA polymerase beta subunit Thein_0273 PF04560 RNA polymerase Rpb2, domain 7 Thein_0274 PF16320 Ribosomal protein L7/L12 dimerisation domain Thein_0274 PF00542 Ribosomal protein L7/L12 C-terminal domain Thein_0275 PF00466 Ribosomal protein L10 Thein_0277 PF03946 Ribosomal protein L11, N-terminal domain Thein_0277 PF00298 Ribosomal protein L11, RNA binding domain Thein_0278 PF00467 KOW motif Thein_0278 PF02357 Transcription termination factor nusG Thein_0280 PF00471 Ribosomal protein L33 Thein_0281 PF00009 Elongation factor Tu GTP binding domain Thein_0281 PF03144 Elongation factor Tu domain 2 Thein_0281 PF03143 Elongation factor Tu C-terminal domain Thein_0283 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thein_0283 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thein_0284 PF01593 Flavin containing amine oxidoreductase Thein_0285 PF00890 FAD binding domain Thein_0286 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Thein_0286 PF13187 4Fe-4S dicluster domain Thein_0287 PF12804 MobA-like NTP transferase domain Thein_0289 PF00374 Nickel-dependent hydrogenase Thein_0290 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thein_0290 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thein_0291 PF01750 Hydrogenase maturation protease Thein_0292 PF01455 HupF/HypC family Thein_0293 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thein_0294 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thein_0295 PF07503 HypF finger Thein_0295 PF01300 Telomere recombination Thein_0295 PF00708 Acylphosphatase Thein_0295 PF17788 HypF Kae1-like domain Thein_0296 PF04055 Radical SAM superfamily Thein_0296 PF18693 TRAM domain Thein_0296 PF00919 Uncharacterized protein family UPF0004 Thein_0297 PF02261 Aspartate decarboxylase Thein_0298 PF02569 Pantoate-beta-alanine ligase Thein_0301 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thein_0302 PF00682 HMGL-like Thein_0302 PF08502 LeuA allosteric (dimerisation) domain Thein_0303 PF13840 ACT domain Thein_0303 PF01842 ACT domain Thein_0303 PF00696 Amino acid kinase family Thein_0304 PF00684 DnaJ central domain Thein_0304 PF01556 DnaJ C terminal domain Thein_0304 PF00226 DnaJ domain Thein_0307 PF17755 UvrA DNA-binding domain Thein_0307 PF17760 UvrA interaction domain Thein_0311 PF00691 OmpA family Thein_0311 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thein_0312 PF01618 MotA/TolQ/ExbB proton channel family Thein_0314 PF00834 Ribulose-phosphate 3 epimerase family Thein_0315 PF00672 HAMP domain Thein_0315 PF16591 Helical bimodular sensor domain Thein_0315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thein_0316 PF12727 PBP superfamily domain Thein_0316 PF12728 Helix-turn-helix domain Thein_0317 PF12849 PBP superfamily domain Thein_0318 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0319 PF00005 ABC transporter Thein_0322 PF00072 Response regulator receiver domain Thein_0322 PF02954 Bacterial regulatory protein, Fis family Thein_0322 PF00158 Sigma-54 interaction domain Thein_0323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0323 PF00512 His Kinase A (phospho-acceptor) domain Thein_0327 PF00582 Universal stress protein family Thein_0330 PF03600 Citrate transporter Thein_0331 PF00582 Universal stress protein family Thein_0332 PF03600 Citrate transporter Thein_0333 PF00582 Universal stress protein family Thein_0334 PF02833 DHHA2 domain Thein_0334 PF01368 DHH family Thein_0340 PF01119 DNA mismatch repair protein, C-terminal domain Thein_0340 PF08676 MutL C terminal dimerisation domain Thein_0342 PF00990 Diguanylate cyclase, GGDEF domain Thein_0342 PF17156 Gammaproteobacterial periplasmic sensor domain Thein_0345 PF01584 CheW-like domain Thein_0346 PF00226 DnaJ domain Thein_0346 PF00684 DnaJ central domain Thein_0346 PF01556 DnaJ C terminal domain Thein_0347 PF07194 P2 response regulator binding domain Thein_0347 PF01627 Hpt domain Thein_0347 PF02895 Signal transducing histidine kinase, homodimeric domain Thein_0347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0347 PF01584 CheW-like domain Thein_0348 PF01739 CheR methyltransferase, SAM binding domain Thein_0348 PF03705 CheR methyltransferase, all-alpha domain Thein_0349 PF00072 Response regulator receiver domain Thein_0349 PF01339 CheB methylesterase Thein_0350 PF00072 Response regulator receiver domain Thein_0351 PF01648 4'-phosphopantetheinyl transferase superfamily Thein_0352 PF07085 DRTGG domain Thein_0353 PF13607 Succinyl-CoA ligase like flavodoxin domain Thein_0353 PF00583 Acetyltransferase (GNAT) family Thein_0353 PF13380 CoA binding domain Thein_0355 PF01475 Ferric uptake regulator family Thein_0359 PF02867 Ribonucleotide reductase, barrel domain Thein_0359 PF00317 Ribonucleotide reductase, all-alpha domain Thein_0359 PF03477 ATP cone domain Thein_0360 PF01487 Type I 3-dehydroquinase Thein_0362 PF13186 Iron-sulfur cluster-binding domain Thein_0362 PF04055 Radical SAM superfamily Thein_0363 PF00072 Response regulator receiver domain Thein_0364 PF06689 ClpX C4-type zinc finger Thein_0364 PF10431 C-terminal, D2-small domain, of ClpB protein Thein_0364 PF07724 AAA domain (Cdc48 subfamily) Thein_0365 PF17764 3′ DNA-binding domain (3′BD) Thein_0365 PF18074 Primosomal protein N C-terminal domain Thein_0365 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thein_0365 PF00270 DEAD/DEAH box helicase Thein_0366 PF01026 TatD related DNase Thein_0367 PF02545 Maf-like protein Thein_0368 PF02472 Biopolymer transport protein ExbD/TolR Thein_0370 PF04052 TolB amino-terminal domain Thein_0370 PF07676 WD40-like Beta Propeller Repeat Thein_0371 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Thein_0371 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Thein_0371 PF02770 Acyl-CoA dehydrogenase, middle domain Thein_0372 PF01012 Electron transfer flavoprotein domain Thein_0373 PF00766 Electron transfer flavoprotein FAD-binding domain Thein_0373 PF01012 Electron transfer flavoprotein domain Thein_0379 PF02801 Beta-ketoacyl synthase, C-terminal domain Thein_0379 PF00109 Beta-ketoacyl synthase, N-terminal domain Thein_0380 PF02502 Ribose/Galactose Isomerase Thein_0381 PF00464 Serine hydroxymethyltransferase Thein_0382 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thein_0383 PF00005 ABC transporter Thein_0384 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0386 PF01177 Asp/Glu/Hydantoin racemase Thein_0387 PF00753 Metallo-beta-lactamase superfamily Thein_0387 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thein_0389 PF00484 Carbonic anhydrase Thein_0395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0395 PF00512 His Kinase A (phospho-acceptor) domain Thein_0395 PF00989 PAS fold Thein_0395 PF16736 Single Cache-like Thein_0396 PF00072 Response regulator receiver domain Thein_0396 PF00486 Transcriptional regulatory protein, C terminal Thein_0397 PF00677 Lumazine binding domain Thein_0398 PF04079 Segregation and condensation complex subunit ScpB Thein_0402 PF00291 Pyridoxal-phosphate dependent enzyme Thein_0402 PF14821 Threonine synthase N terminus Thein_0404 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thein_0404 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thein_0405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thein_0405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thein_0408 PF00025 ADP-ribosylation factor family Thein_0410 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thein_0410 PF00437 Type II/IV secretion system protein Thein_0411 PF00512 His Kinase A (phospho-acceptor) domain Thein_0411 PF00989 PAS fold Thein_0411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0411 PF13188 PAS domain Thein_0411 PF13426 PAS domain Thein_0412 PF00158 Sigma-54 interaction domain Thein_0412 PF00072 Response regulator receiver domain Thein_0412 PF02954 Bacterial regulatory protein, Fis family Thein_0415 PF03601 Conserved hypothetical protein 698 Thein_0417 PF12706 Beta-lactamase superfamily domain Thein_0419 PF12390 Selenocysteine synthase N terminal Thein_0419 PF03841 L-seryl-tRNA selenium transferase Thein_0429 PF12327 FtsZ family, C-terminal domain Thein_0429 PF00091 Tubulin/FtsZ family, GTPase domain Thein_0430 PF02491 SHS2 domain inserted in FTSA Thein_0431 PF08478 POTRA domain, FtsQ-type Thein_0431 PF03799 Cell division protein FtsQ Thein_0432 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thein_0432 PF01565 FAD binding domain Thein_0433 PF01225 Mur ligase family, catalytic domain Thein_0433 PF02875 Mur ligase family, glutamate ligase domain Thein_0433 PF08245 Mur ligase middle domain Thein_0434 PF04101 Glycosyltransferase family 28 C-terminal domain Thein_0434 PF03033 Glycosyltransferase family 28 N-terminal domain Thein_0435 PF08245 Mur ligase middle domain Thein_0435 PF01225 Mur ligase family, catalytic domain Thein_0435 PF02875 Mur ligase family, glutamate ligase domain Thein_0436 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thein_0436 PF00953 Glycosyl transferase family 4 Thein_0437 PF08245 Mur ligase middle domain Thein_0437 PF01225 Mur ligase family, catalytic domain Thein_0437 PF02875 Mur ligase family, glutamate ligase domain Thein_0438 PF08245 Mur ligase middle domain Thein_0438 PF02875 Mur ligase family, glutamate ligase domain Thein_0438 PF01225 Mur ligase family, catalytic domain Thein_0441 PF01795 MraW methylase family Thein_0442 PF02381 MraZ protein, putative antitoxin-like Thein_0443 PF09820 Predicted AAA-ATPase Thein_0443 PF08011 PD-(D/E)XK nuclease superfamily Thein_0445 PF02719 Polysaccharide biosynthesis protein Thein_0446 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thein_0447 PF02348 Cytidylyltransferase Thein_0448 PF02348 Cytidylyltransferase Thein_0449 PF08666 SAF domain Thein_0449 PF03102 NeuB family Thein_0451 PF00669 Bacterial flagellin N-terminal helical region Thein_0451 PF07196 Flagellin hook IN motif Thein_0451 PF00700 Bacterial flagellin C-terminal helical region Thein_0454 PF07196 Flagellin hook IN motif Thein_0454 PF02465 Flagellar hook-associated protein 2 N-terminus Thein_0454 PF07195 Flagellar hook-associated protein 2 C-terminus Thein_0455 PF02623 FliW protein Thein_0456 PF02599 Global regulator protein family Thein_0457 PF00700 Bacterial flagellin C-terminal helical region Thein_0457 PF00669 Bacterial flagellin N-terminal helical region Thein_0458 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_0458 PF00460 Flagella basal body rod protein Thein_0458 PF00460 Flagella basal body rod protein Thein_0458 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_0461 PF10135 Rod binding protein Thein_0461 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thein_0462 PF02119 Flagellar P-ring protein Thein_0463 PF02107 Flagellar L-ring protein Thein_0465 PF00460 Flagella basal body rod protein Thein_0465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_0466 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_0466 PF00460 Flagella basal body rod protein Thein_0468 PF10609 NUBPL iron-transfer P-loop NTPase Thein_0468 PF10609 NUBPL iron-transfer P-loop NTPase Thein_0469 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thein_0471 PF02222 ATP-grasp domain Thein_0471 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Thein_0472 PF00731 AIR carboxylase Thein_0473 PF00156 Phosphoribosyl transferase domain Thein_0474 PF00696 Amino acid kinase family Thein_0476 PF00005 ABC transporter Thein_0477 PF03649 Uncharacterised protein family (UPF0014) Thein_0479 PF00483 Nucleotidyl transferase Thein_0481 PF00902 Sec-independent protein translocase protein (TatC) Thein_0482 PF02780 Transketolase, C-terminal domain Thein_0482 PF00456 Transketolase, thiamine diphosphate binding domain Thein_0482 PF02779 Transketolase, pyrimidine binding domain Thein_0483 PF08447 PAS fold Thein_0483 PF00989 PAS fold Thein_0483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0483 PF00512 His Kinase A (phospho-acceptor) domain Thein_0484 PF00072 Response regulator receiver domain Thein_0484 PF00158 Sigma-54 interaction domain Thein_0484 PF02954 Bacterial regulatory protein, Fis family Thein_0487 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0488 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thein_0488 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thein_0491 PF00206 Lyase Thein_0491 PF10415 Fumarase C C-terminus Thein_0495 PF02256 Iron hydrogenase small subunit Thein_0495 PF00037 4Fe-4S binding domain Thein_0495 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thein_0495 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thein_0498 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thein_0498 PF00037 4Fe-4S binding domain Thein_0499 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thein_0499 PF01926 50S ribosome-binding GTPase Thein_0500 PF04055 Radical SAM superfamily Thein_0500 PF06968 Biotin and Thiamin Synthesis associated domain Thein_0502 PF01497 Periplasmic binding protein Thein_0503 PF01032 FecCD transport family Thein_0504 PF00005 ABC transporter Thein_0508 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thein_0509 PF01171 PP-loop family Thein_0510 PF03631 Virulence factor BrkB Thein_0511 PF11741 AMIN domain Thein_0511 PF03958 Bacterial type II/III secretion system short domain Thein_0511 PF07660 Secretin and TonB N terminus short domain Thein_0511 PF00263 Bacterial type II and III secretion system protein Thein_0516 PF00679 Elongation factor G C-terminus Thein_0516 PF06421 GTP-binding protein LepA C-terminus Thein_0516 PF03144 Elongation factor Tu domain 2 Thein_0516 PF00009 Elongation factor Tu GTP binding domain Thein_0517 PF10502 Signal peptidase, peptidase S26 Thein_0519 PF00990 Diguanylate cyclase, GGDEF domain Thein_0519 PF13185 GAF domain Thein_0523 PF02686 Glu-tRNAGln amidotransferase C subunit Thein_0524 PF08543 Phosphomethylpyrimidine kinase Thein_0528 PF01968 Hydantoinase/oxoprolinase Thein_0528 PF05378 Hydantoinase/oxoprolinase N-terminal region Thein_0530 PF00011 Hsp20/alpha crystallin family Thein_0531 PF00011 Hsp20/alpha crystallin family Thein_0533 PF02754 Cysteine-rich domain Thein_0533 PF13183 4Fe-4S dicluster domain Thein_0536 PF02666 Phosphatidylserine decarboxylase Thein_0537 PF01066 CDP-alcohol phosphatidyltransferase Thein_0538 PF00682 HMGL-like Thein_0538 PF08502 LeuA allosteric (dimerisation) domain Thein_0539 PF00072 Response regulator receiver domain Thein_0539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0539 PF13426 PAS domain Thein_0540 PF00012 Hsp70 protein Thein_0541 PF00216 Bacterial DNA-binding protein Thein_0542 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thein_0543 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0544 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0545 PF00005 ABC transporter Thein_0546 PF01968 Hydantoinase/oxoprolinase Thein_0546 PF05378 Hydantoinase/oxoprolinase N-terminal region Thein_0548 PF03480 Bacterial extracellular solute-binding protein, family 7 Thein_0550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Thein_0552 PF00472 RF-1 domain Thein_0552 PF03462 PCRF domain Thein_0553 PF01197 Ribosomal protein L31 Thein_0554 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thein_0554 PF07498 Rho termination factor, N-terminal domain Thein_0554 PF07497 Rho termination factor, RNA-binding domain Thein_0555 PF01180 Dihydroorotate dehydrogenase Thein_0556 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thein_0557 PF00764 Arginosuccinate synthase Thein_0558 PF00348 Polyprenyl synthetase Thein_0562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0562 PF00512 His Kinase A (phospho-acceptor) domain Thein_0563 PF07687 Peptidase dimerisation domain Thein_0563 PF01546 Peptidase family M20/M25/M40 Thein_0564 PF00708 Acylphosphatase Thein_0566 PF02641 Uncharacterized ACR, COG1993 Thein_0567 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thein_0568 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Thein_0571 PF17676 LD-carboxypeptidase C-terminal domain Thein_0571 PF02016 LD-carboxypeptidase N-terminal domain Thein_0572 PF03309 Type III pantothenate kinase Thein_0575 PF00593 TonB dependent receptor Thein_0575 PF07715 TonB-dependent Receptor Plug Domain Thein_0576 PF02514 CobN/Magnesium Chelatase Thein_0577 PF01872 RibD C-terminal domain Thein_0577 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thein_0579 PF02824 TGS domain Thein_0579 PF04607 Region found in RelA / SpoT proteins Thein_0579 PF13291 ACT domain Thein_0580 PF00830 Ribosomal L28 family Thein_0581 PF03796 DnaB-like helicase C terminal domain Thein_0581 PF00772 DnaB-like helicase N terminal domain Thein_0583 PF02542 YgbB family Thein_0584 PF01541 GIY-YIG catalytic domain Thein_0584 PF02151 UvrB/uvrC motif Thein_0584 PF08459 UvrC Helix-hairpin-helix N-terminal Thein_0587 PF09115 DNA polymerase III, delta subunit, C terminal Thein_0588 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thein_0589 PF13847 Methyltransferase domain Thein_0589 PF17827 PrmC N-terminal domain Thein_0591 PF02938 GAD domain Thein_0591 PF00152 tRNA synthetases class II (D, K and N) Thein_0591 PF01336 OB-fold nucleic acid binding domain Thein_0592 PF00982 Glycosyltransferase family 20 Thein_0594 PF00534 Glycosyl transferases group 1 Thein_0596 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Thein_0597 PF01018 GTP1/OBG Thein_0597 PF04055 Radical SAM superfamily Thein_0597 PF01926 50S ribosome-binding GTPase Thein_0598 PF18152 DAHP synthase ferredoxin-like domain Thein_0598 PF00793 DAHP synthetase I family Thein_0599 PF00924 Mechanosensitive ion channel Thein_0599 PF05552 Conserved TM helix Thein_0600 PF00154 recA bacterial DNA recombination protein Thein_0601 PF01467 Cytidylyltransferase-like Thein_0601 PF00294 pfkB family carbohydrate kinase Thein_0603 PF01103 Surface antigen Thein_0603 PF07244 Surface antigen variable number repeat Thein_0604 PF00005 ABC transporter Thein_0605 PF02687 FtsX-like permease family Thein_0605 PF12704 MacB-like periplasmic core domain Thein_0606 PF00152 tRNA synthetases class II (D, K and N) Thein_0606 PF01336 OB-fold nucleic acid binding domain Thein_0607 PF00580 UvrD/REP helicase N-terminal domain Thein_0607 PF13361 UvrD-like helicase C-terminal domain Thein_0611 PF09335 SNARE associated Golgi protein Thein_0613 PF00580 UvrD/REP helicase N-terminal domain Thein_0613 PF12705 PD-(D/E)XK nuclease superfamily Thein_0613 PF13361 UvrD-like helicase C-terminal domain Thein_0616 PF01957 NfeD-like C-terminal, partner-binding Thein_0616 PF01972 Serine dehydrogenase proteinase Thein_0617 PF03466 LysR substrate binding domain Thein_0617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thein_0618 PF00270 DEAD/DEAH box helicase Thein_0618 PF00271 Helicase conserved C-terminal domain Thein_0618 PF17191 RecG wedge domain Thein_0619 PF03447 Homoserine dehydrogenase, NAD binding domain Thein_0619 PF00742 Homoserine dehydrogenase Thein_0619 PF01842 ACT domain Thein_0620 PF00156 Phosphoribosyl transferase domain Thein_0624 PF01206 Sulfurtransferase TusA Thein_0625 PF04143 Sulphur transport Thein_0626 PF00675 Insulinase (Peptidase family M16) Thein_0626 PF05193 Peptidase M16 inactive domain Thein_0629 PF10609 NUBPL iron-transfer P-loop NTPase Thein_0629 PF01883 Iron-sulfur cluster assembly protein Thein_0630 PF10396 GTP-binding protein TrmE N-terminus Thein_0630 PF12631 MnmE helical domain Thein_0630 PF01926 50S ribosome-binding GTPase Thein_0632 PF14849 YidC periplasmic domain Thein_0632 PF02096 60Kd inner membrane protein Thein_0633 PF01809 Putative membrane protein insertion efficiency factor Thein_0634 PF00825 Ribonuclease P Thein_0635 PF00468 Ribosomal protein L34 Thein_0637 PF00994 Probable molybdopterin binding domain Thein_0637 PF03454 MoeA C-terminal region (domain IV) Thein_0637 PF03453 MoeA N-terminal region (domain I and II) Thein_0643 PF02021 Uncharacterised protein family UPF0102 Thein_0644 PF01351 Ribonuclease HII Thein_0645 PF01245 Ribosomal protein L19 Thein_0646 PF09936 SAM-dependent RNA methyltransferase Thein_0647 PF01746 tRNA (Guanine-1)-methyltransferase Thein_0649 PF02673 Bacitracin resistance protein BacA Thein_0650 PF13180 PDZ domain Thein_0652 PF01066 CDP-alcohol phosphatidyltransferase Thein_0655 PF12146 Serine aminopeptidase, S33 Thein_0658 PF02142 MGS-like domain Thein_0658 PF01808 AICARFT/IMPCHase bienzyme Thein_0659 PF17284 Spermidine synthase tetramerisation domain Thein_0660 PF02675 S-adenosylmethionine decarboxylase Thein_0663 PF01969 Protein of unknown function DUF111 Thein_0665 PF12849 PBP superfamily domain Thein_0669 PF01938 TRAM domain Thein_0669 PF05958 tRNA (Uracil-5-)-methyltransferase Thein_0670 PF01406 tRNA synthetases class I (C) catalytic domain Thein_0670 PF09190 DALR domain Thein_0671 PF00158 Sigma-54 interaction domain Thein_0671 PF00072 Response regulator receiver domain Thein_0671 PF02954 Bacterial regulatory protein, Fis family Thein_0672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0672 PF00989 PAS fold Thein_0672 PF08447 PAS fold Thein_0672 PF00512 His Kinase A (phospho-acceptor) domain Thein_0674 PF00005 ABC transporter Thein_0674 PF08402 TOBE domain Thein_0675 PF13416 Bacterial extracellular solute-binding protein Thein_0676 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0677 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0678 PF03009 Glycerophosphoryl diester phosphodiesterase family Thein_0681 PF02899 Phage integrase, N-terminal SAM-like domain Thein_0681 PF00589 Phage integrase family Thein_0682 PF00227 Proteasome subunit Thein_0683 PF07724 AAA domain (Cdc48 subfamily) Thein_0683 PF10431 C-terminal, D2-small domain, of ClpB protein Thein_0683 PF00004 ATPase family associated with various cellular activities (AAA) Thein_0684 PF06463 Molybdenum Cofactor Synthesis C Thein_0684 PF04055 Radical SAM superfamily Thein_0685 PF17969 L,D-transpeptidase C-terminal domain Thein_0685 PF01476 LysM domain Thein_0685 PF03734 L,D-transpeptidase catalytic domain Thein_0690 PF00535 Glycosyl transferase family 2 Thein_0693 PF00664 ABC transporter transmembrane region Thein_0693 PF00005 ABC transporter Thein_0695 PF00795 Carbon-nitrogen hydrolase Thein_0696 PF00571 CBS domain Thein_0696 PF03471 Transporter associated domain Thein_0700 PF02621 Menaquinone biosynthesis Thein_0701 PF01522 Polysaccharide deacetylase Thein_0702 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thein_0708 PF13439 Glycosyltransferase Family 4 Thein_0708 PF00534 Glycosyl transferases group 1 Thein_0709 PF00733 Asparagine synthase Thein_0709 PF13537 Glutamine amidotransferase domain Thein_0710 PF13439 Glycosyltransferase Family 4 Thein_0710 PF00534 Glycosyl transferases group 1 Thein_0712 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thein_0713 PF02397 Bacterial sugar transferase Thein_0714 PF09820 Predicted AAA-ATPase Thein_0714 PF08011 PD-(D/E)XK nuclease superfamily Thein_0719 PF09820 Predicted AAA-ATPase Thein_0719 PF08011 PD-(D/E)XK nuclease superfamily Thein_0725 PF04321 RmlD substrate binding domain Thein_0726 PF16363 GDP-mannose 4,6 dehydratase Thein_0727 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Thein_0729 PF00483 Nucleotidyl transferase Thein_0735 PF03102 NeuB family Thein_0735 PF08666 SAF domain Thein_0736 PF02348 Cytidylyltransferase Thein_0743 PF01709 Transcriptional regulator Thein_0744 PF02075 Crossover junction endodeoxyribonuclease RuvC Thein_0745 PF07499 RuvA, C-terminal domain Thein_0745 PF01330 RuvA N terminal domain Thein_0746 PF17864 RuvB AAA lid domain Thein_0746 PF05491 RuvB C-terminal winged helix domain Thein_0746 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thein_0747 PF02548 Ketopantoate hydroxymethyltransferase Thein_0750 PF01066 CDP-alcohol phosphatidyltransferase Thein_0751 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thein_0752 PF04551 GcpE protein Thein_0754 PF01658 Myo-inositol-1-phosphate synthase Thein_0755 PF00155 Aminotransferase class I and II Thein_0756 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thein_0758 PF14718 Soluble lytic murein transglycosylase L domain Thein_0758 PF01464 Transglycosylase SLT domain Thein_0760 PF02649 Type I GTP cyclohydrolase folE2 Thein_0761 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thein_0762 PF03129 Anticodon binding domain Thein_0762 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thein_0762 PF04073 Aminoacyl-tRNA editing domain Thein_0763 PF01479 S4 domain Thein_0763 PF01728 FtsJ-like methyltransferase Thein_0764 PF00478 IMP dehydrogenase / GMP reductase domain Thein_0764 PF00571 CBS domain Thein_0765 PF00912 Transglycosylase Thein_0765 PF00905 Penicillin binding protein transpeptidase domain Thein_0768 PF01960 ArgJ family Thein_0770 PF01975 Survival protein SurE Thein_0772 PF04055 Radical SAM superfamily Thein_0772 PF13186 Iron-sulfur cluster-binding domain Thein_0774 PF09190 DALR domain Thein_0774 PF01406 tRNA synthetases class I (C) catalytic domain Thein_0776 PF03819 MazG nucleotide pyrophosphohydrolase domain Thein_0779 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thein_0779 PF00005 ABC transporter Thein_0784 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thein_0784 PF00005 ABC transporter Thein_0787 PF05552 Conserved TM helix Thein_0788 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thein_0790 PF09094 Domain of unknown function (DUF1925) Thein_0790 PF09095 Domain of unknown function (DUF1926) Thein_0790 PF03065 Glycosyl hydrolase family 57 Thein_0791 PF02445 Quinolinate synthetase A protein Thein_0793 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thein_0793 PF17854 FtsK alpha domain Thein_0793 PF09397 Ftsk gamma domain Thein_0793 PF01580 FtsK/SpoIIIE family Thein_0798 PF00334 Nucleoside diphosphate kinase Thein_0799 PF02769 AIR synthase related protein, C-terminal domain Thein_0799 PF00586 AIR synthase related protein, N-terminal domain Thein_0807 PF00696 Amino acid kinase family Thein_0807 PF00583 Acetyltransferase (GNAT) family Thein_0809 PF05746 DALR anticodon binding domain Thein_0809 PF03485 Arginyl tRNA synthetase N terminal domain Thein_0809 PF00750 tRNA synthetases class I (R) Thein_0814 PF09285 Elongation factor P, C-terminal Thein_0814 PF08207 Elongation factor P (EF-P) KOW-like domain Thein_0814 PF01132 Elongation factor P (EF-P) OB domain Thein_0816 PF04546 Sigma-70, non-essential region Thein_0816 PF03979 Sigma-70 factor, region 1.1 Thein_0816 PF00140 Sigma-70 factor, region 1.2 Thein_0816 PF04539 Sigma-70 region 3 Thein_0816 PF04542 Sigma-70 region 2 Thein_0816 PF04545 Sigma-70, region 4 Thein_0818 PF00291 Pyridoxal-phosphate dependent enzyme Thein_0819 PF00290 Tryptophan synthase alpha chain Thein_0821 PF01702 Queuine tRNA-ribosyltransferase Thein_0822 PF02699 Preprotein translocase subunit Thein_0823 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thein_0823 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thein_0829 PF02322 Cytochrome bd terminal oxidase subunit II Thein_0830 PF01654 Cytochrome bd terminal oxidase subunit I Thein_0831 PF02082 Transcriptional regulator Thein_0832 PF00551 Formyl transferase Thein_0833 PF00155 Aminotransferase class I and II Thein_0834 PF04029 2-phosphosulpholactate phosphatase Thein_0835 PF02540 NAD synthase Thein_0835 PF00795 Carbon-nitrogen hydrolase Thein_0837 PF12557 Cob(I)alamin adenosyltransferase N terminal Thein_0837 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Thein_0839 PF00117 Glutamine amidotransferase class-I Thein_0839 PF06418 CTP synthase N-terminus Thein_0840 PF02527 rRNA small subunit methyltransferase G Thein_0841 PF18073 Rubredoxin metal binding domain Thein_0842 PF02583 Metal-sensitive transcriptional repressor Thein_0844 PF00117 Glutamine amidotransferase class-I Thein_0844 PF00591 Glycosyl transferase family, a/b domain Thein_0844 PF02885 Glycosyl transferase family, helical bundle domain Thein_0846 PF01066 CDP-alcohol phosphatidyltransferase Thein_0848 PF17805 AsnC-like ligand binding domain Thein_0850 PF07690 Major Facilitator Superfamily Thein_0852 PF01871 AMMECR1 Thein_0854 PF00266 Aminotransferase class-V Thein_0855 PF01842 ACT domain Thein_0855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thein_0855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thein_0859 PF04055 Radical SAM superfamily Thein_0860 PF01134 Glucose inhibited division protein A Thein_0862 PF05698 Bacterial trigger factor protein (TF) C-terminus Thein_0862 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thein_0862 PF05697 Bacterial trigger factor protein (TF) Thein_0863 PF00574 Clp protease Thein_0864 PF07724 AAA domain (Cdc48 subfamily) Thein_0864 PF10431 C-terminal, D2-small domain, of ClpB protein Thein_0864 PF06689 ClpX C4-type zinc finger Thein_0865 PF00004 ATPase family associated with various cellular activities (AAA) Thein_0865 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thein_0865 PF05362 Lon protease (S16) C-terminal proteolytic domain Thein_0867 PF13580 SIS domain Thein_0872 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Thein_0872 PF03900 Porphobilinogen deaminase, C-terminal domain Thein_0876 PF00266 Aminotransferase class-V Thein_0878 PF03641 Possible lysine decarboxylase Thein_0879 PF11967 Recombination protein O N terminal Thein_0879 PF02565 Recombination protein O C terminal Thein_0881 PF09312 SurA N-terminal domain Thein_0881 PF00639 PPIC-type PPIASE domain Thein_0882 PF03461 TRCF domain Thein_0882 PF00270 DEAD/DEAH box helicase Thein_0882 PF02559 CarD-like/TRCF domain Thein_0882 PF17757 UvrB interaction domain Thein_0882 PF00271 Helicase conserved C-terminal domain Thein_0883 PF00990 Diguanylate cyclase, GGDEF domain Thein_0884 PF01016 Ribosomal L27 protein Thein_0885 PF00829 Ribosomal prokaryotic L21 protein Thein_0887 PF01050 Mannose-6-phosphate isomerase Thein_0887 PF00483 Nucleotidyl transferase Thein_0888 PF00365 Phosphofructokinase Thein_0889 PF08338 Domain of unknown function (DUF1731) Thein_0889 PF01370 NAD dependent epimerase/dehydratase family Thein_0890 PF08447 PAS fold Thein_0890 PF00989 PAS fold Thein_0890 PF00512 His Kinase A (phospho-acceptor) domain Thein_0890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0891 PF01230 HIT domain Thein_0893 PF04358 DsrC like protein Thein_0895 PF04055 Radical SAM superfamily Thein_0896 PF01242 6-pyruvoyl tetrahydropterin synthase Thein_0897 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thein_0897 PF02769 AIR synthase related protein, C-terminal domain Thein_0897 PF00586 AIR synthase related protein, N-terminal domain Thein_0900 PF04545 Sigma-70, region 4 Thein_0900 PF04542 Sigma-70 region 2 Thein_0900 PF00140 Sigma-70 factor, region 1.2 Thein_0900 PF04539 Sigma-70 region 3 Thein_0901 PF01134 Glucose inhibited division protein A Thein_0901 PF13932 GidA associated domain Thein_0903 PF00571 CBS domain Thein_0903 PF03471 Transporter associated domain Thein_0903 PF01595 Cyclin M transmembrane N-terminal domain Thein_0904 PF00571 CBS domain Thein_0904 PF03471 Transporter associated domain Thein_0904 PF01595 Cyclin M transmembrane N-terminal domain Thein_0905 PF01594 AI-2E family transporter Thein_0906 PF06827 Zinc finger found in FPG and IleRS Thein_0906 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Thein_0906 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Thein_0907 PF10458 Valyl tRNA synthetase tRNA binding arm Thein_0907 PF08264 Anticodon-binding domain of tRNA Thein_0907 PF00133 tRNA synthetases class I (I, L, M and V) Thein_0909 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thein_0910 PF02743 Cache domain Thein_0910 PF00512 His Kinase A (phospho-acceptor) domain Thein_0910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_0915 PF04608 Phosphatidylglycerophosphatase A Thein_0917 PF02769 AIR synthase related protein, C-terminal domain Thein_0917 PF00586 AIR synthase related protein, N-terminal domain Thein_0919 PF00310 Glutamine amidotransferases class-II Thein_0920 PF13187 4Fe-4S dicluster domain Thein_0920 PF01645 Conserved region in glutamate synthase Thein_0921 PF01513 ATP-NAD kinase Thein_0922 PF12732 YtxH-like protein Thein_0926 PF01814 Hemerythrin HHE cation binding domain Thein_0927 PF01464 Transglycosylase SLT domain Thein_0927 PF01476 LysM domain Thein_0928 PF00565 Staphylococcal nuclease homologue Thein_0928 PF05901 Excalibur calcium-binding domain Thein_0929 PF00800 Prephenate dehydratase Thein_0929 PF01817 Chorismate mutase type II Thein_0929 PF01842 ACT domain Thein_0932 PF02080 TrkA-C domain Thein_0932 PF02254 TrkA-N domain Thein_0933 PF02386 Cation transport protein Thein_0934 PF13520 Amino acid permease Thein_0935 PF01938 TRAM domain Thein_0935 PF04055 Radical SAM superfamily Thein_0935 PF00919 Uncharacterized protein family UPF0004 Thein_0936 PF02577 Bifunctional nuclease Thein_0938 PF00580 UvrD/REP helicase N-terminal domain Thein_0938 PF13361 UvrD-like helicase C-terminal domain Thein_0942 PF00158 Sigma-54 interaction domain Thein_0942 PF02954 Bacterial regulatory protein, Fis family Thein_0942 PF01590 GAF domain Thein_0943 PF12627 Probable RNA and SrmB- binding site of polymerase A Thein_0943 PF12626 Polymerase A arginine-rich C-terminus Thein_0943 PF01743 Poly A polymerase head domain Thein_0944 PF13419 Haloacid dehalogenase-like hydrolase Thein_0947 PF00156 Phosphoribosyl transferase domain Thein_0948 PF03099 Biotin/lipoate A/B protein ligase family Thein_0948 PF08279 HTH domain Thein_0948 PF02237 Biotin protein ligase C terminal domain Thein_0949 PF00591 Glycosyl transferase family, a/b domain Thein_0949 PF02885 Glycosyl transferase family, helical bundle domain Thein_0950 PF06071 Protein of unknown function (DUF933) Thein_0950 PF01926 50S ribosome-binding GTPase Thein_0951 PF00919 Uncharacterized protein family UPF0004 Thein_0951 PF04055 Radical SAM superfamily Thein_0953 PF00730 HhH-GPD superfamily base excision DNA repair protein Thein_0953 PF00633 Helix-hairpin-helix motif Thein_0954 PF01546 Peptidase family M20/M25/M40 Thein_0955 PF00583 Acetyltransferase (GNAT) family Thein_0957 PF01761 3-dehydroquinate synthase Thein_0958 PF01810 LysE type translocator Thein_0960 PF00403 Heavy-metal-associated domain Thein_0962 PF00301 Rubredoxin Thein_0964 PF00872 Transposase, Mutator family Thein_0969 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thein_0970 PF00977 Histidine biosynthesis protein Thein_0972 PF00364 Biotin-requiring enzyme Thein_0973 PF00289 Biotin carboxylase, N-terminal domain Thein_0973 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thein_0973 PF02785 Biotin carboxylase C-terminal domain Thein_0974 PF00563 EAL domain Thein_0974 PF00990 Diguanylate cyclase, GGDEF domain Thein_0974 PF08448 PAS fold Thein_0974 PF08447 PAS fold Thein_0975 PF00999 Sodium/hydrogen exchanger family Thein_0975 PF02254 TrkA-N domain Thein_0977 PF17762 HTH domain found in ParB protein Thein_0977 PF02195 ParB-like nuclease domain Thein_0978 PF13614 AAA domain Thein_0980 PF03330 Lytic transglycolase Thein_0980 PF05036 Sporulation related domain Thein_0981 PF00005 ABC transporter Thein_0981 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thein_0982 PF00005 ABC transporter Thein_0982 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thein_0984 PF00528 Binding-protein-dependent transport system inner membrane component Thein_0985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thein_0986 PF14622 Ribonuclease-III-like Thein_0986 PF00035 Double-stranded RNA binding motif Thein_0987 PF07650 KH domain Thein_0987 PF01926 50S ribosome-binding GTPase Thein_0988 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Thein_0989 PF00994 Probable molybdopterin binding domain Thein_0989 PF02464 Competence-damaged protein Thein_0989 PF18146 Damage-inducible protein CinA KH domain Thein_0991 PF01979 Amidohydrolase family Thein_0992 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thein_0992 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thein_0993 PF00210 Ferritin-like domain Thein_0994 PF00202 Aminotransferase class-III Thein_0995 PF00313 'Cold-shock' DNA-binding domain Thein_0996 PF02348 Cytidylyltransferase Thein_1001 PF11146 Protein of unknown function (DUF2905) Thein_1002 PF02677 Epoxyqueuosine reductase QueH Thein_1003 PF00712 DNA polymerase III beta subunit, N-terminal domain Thein_1003 PF02767 DNA polymerase III beta subunit, central domain Thein_1003 PF02768 DNA polymerase III beta subunit, C-terminal domain Thein_1004 PF01751 Toprim domain Thein_1004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1004 PF00986 DNA gyrase B subunit, carboxyl terminus Thein_1004 PF00204 DNA gyrase B Thein_1008 PF01891 Cobalt uptake substrate-specific transmembrane region Thein_1011 PF00005 ABC transporter Thein_1014 PF01676 Metalloenzyme superfamily Thein_1014 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Thein_1016 PF14489 QueF-like protein Thein_1020 PF03063 Prismane/CO dehydrogenase family Thein_1021 PF13419 Haloacid dehalogenase-like hydrolase Thein_1023 PF01467 Cytidylyltransferase-like Thein_1023 PF00294 pfkB family carbohydrate kinase Thein_1024 PF00156 Phosphoribosyl transferase domain Thein_1025 PF17820 PDZ domain Thein_1025 PF13180 PDZ domain Thein_1029 PF05698 Bacterial trigger factor protein (TF) C-terminus Thein_1030 PF06971 Putative DNA-binding protein N-terminus Thein_1030 PF02629 CoA binding domain Thein_1031 PF01018 GTP1/OBG Thein_1031 PF01926 50S ribosome-binding GTPase Thein_1032 PF00696 Amino acid kinase family Thein_1032 PF01472 PUA domain Thein_1033 PF04055 Radical SAM superfamily Thein_1034 PF01979 Amidohydrolase family Thein_1036 PF00294 pfkB family carbohydrate kinase Thein_1037 PF01523 Putative modulator of DNA gyrase Thein_1038 PF00156 Phosphoribosyl transferase domain Thein_1039 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thein_1040 PF12729 Four helix bundle sensory module for signal transduction Thein_1040 PF00672 HAMP domain Thein_1040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thein_1041 PF08245 Mur ligase middle domain Thein_1041 PF02875 Mur ligase family, glutamate ligase domain Thein_1042 PF00474 Sodium:solute symporter family Thein_1044 PF01520 N-acetylmuramoyl-L-alanine amidase Thein_1045 PF00488 MutS domain V Thein_1045 PF05188 MutS domain II Thein_1045 PF05192 MutS domain III Thein_1045 PF05190 MutS family domain IV Thein_1045 PF01624 MutS domain I Thein_1046 PF03167 Uracil DNA glycosylase superfamily Thein_1047 PF01590 GAF domain Thein_1047 PF02954 Bacterial regulatory protein, Fis family Thein_1047 PF00158 Sigma-54 interaction domain Thein_1049 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thein_1050 PF00543 Nitrogen regulatory protein P-II Thein_1051 PF00543 Nitrogen regulatory protein P-II Thein_1052 PF02579 Dinitrogenase iron-molybdenum cofactor Thein_1052 PF04055 Radical SAM superfamily Thein_1054 PF00148 Nitrogenase component 1 type Oxidoreductase Thein_1055 PF02560 Cyanate lyase C-terminal domain Thein_1056 PF00148 Nitrogenase component 1 type Oxidoreductase Thein_1058 PF03372 Endonuclease/Exonuclease/phosphatase family Thein_1061 PF00989 PAS fold Thein_1061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1061 PF00512 His Kinase A (phospho-acceptor) domain Thein_1062 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thein_1063 PF00582 Universal stress protein family Thein_1064 PF02811 PHP domain Thein_1065 PF01479 S4 domain Thein_1065 PF00849 RNA pseudouridylate synthase Thein_1066 PF01687 Riboflavin kinase Thein_1066 PF06574 FAD synthetase Thein_1068 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thein_1068 PF00117 Glutamine amidotransferase class-I Thein_1070 PF02223 Thymidylate kinase Thein_1071 PF01713 Smr domain Thein_1071 PF00488 MutS domain V Thein_1072 PF00072 Response regulator receiver domain Thein_1072 PF00512 His Kinase A (phospho-acceptor) domain Thein_1072 PF08448 PAS fold Thein_1072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1072 PF13188 PAS domain Thein_1073 PF13286 Phosphohydrolase-associated domain Thein_1073 PF01966 HD domain Thein_1074 PF02547 Queuosine biosynthesis protein Thein_1075 PF03710 Glutamate-ammonia ligase adenylyltransferase Thein_1075 PF08335 GlnD PII-uridylyltransferase Thein_1076 PF01578 Cytochrome C assembly protein Thein_1077 PF00512 His Kinase A (phospho-acceptor) domain Thein_1077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1079 PF02653 Branched-chain amino acid transport system / permease component Thein_1080 PF11862 Domain of unknown function (DUF3382) Thein_1080 PF02653 Branched-chain amino acid transport system / permease component Thein_1081 PF13439 Glycosyltransferase Family 4 Thein_1082 PF01522 Polysaccharide deacetylase Thein_1085 PF00266 Aminotransferase class-V Thein_1088 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thein_1088 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thein_1088 PF04324 BFD-like [2Fe-2S] binding domain Thein_1088 PF18267 Rubredoxin NAD+ reductase C-terminal domain Thein_1090 PF00384 Molybdopterin oxidoreductase Thein_1090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thein_1090 PF01568 Molydopterin dinucleotide binding domain Thein_1093 PF01171 PP-loop family Thein_1096 PF14602 Hexapeptide repeat of succinyl-transferase Thein_1096 PF12804 MobA-like NTP transferase domain Thein_1096 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_1098 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_1098 PF00483 Nucleotidyl transferase Thein_1102 PF13188 PAS domain Thein_1102 PF08448 PAS fold Thein_1102 PF00072 Response regulator receiver domain Thein_1102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1102 PF00512 His Kinase A (phospho-acceptor) domain Thein_1104 PF01964 Radical SAM ThiC family Thein_1105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thein_1105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thein_1110 PF17785 PUA-like domain Thein_1110 PF10672 S-adenosylmethionine-dependent methyltransferase Thein_1111 PF14716 Helix-hairpin-helix domain Thein_1111 PF14791 DNA polymerase beta thumb Thein_1111 PF02811 PHP domain Thein_1114 PF01965 DJ-1/PfpI family Thein_1115 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Thein_1115 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Thein_1116 PF00857 Isochorismatase family Thein_1121 PF00218 Indole-3-glycerol phosphate synthase Thein_1123 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thein_1123 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thein_1124 PF01678 Diaminopimelate epimerase Thein_1125 PF00701 Dihydrodipicolinate synthetase family Thein_1126 PF01113 Dihydrodipicolinate reductase, N-terminus Thein_1126 PF05173 Dihydrodipicolinate reductase, C-terminus Thein_1130 PF00072 Response regulator receiver domain Thein_1130 PF02954 Bacterial regulatory protein, Fis family Thein_1130 PF00158 Sigma-54 interaction domain Thein_1131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1131 PF00512 His Kinase A (phospho-acceptor) domain Thein_1131 PF00072 Response regulator receiver domain Thein_1131 PF13188 PAS domain Thein_1131 PF08448 PAS fold Thein_1132 PF00924 Mechanosensitive ion channel Thein_1133 PF06965 Na+/H+ antiporter 1 Thein_1136 PF01979 Amidohydrolase family Thein_1137 PF00449 Urease alpha-subunit, N-terminal domain Thein_1137 PF01979 Amidohydrolase family Thein_1138 PF00699 Urease beta subunit Thein_1138 PF00547 Urease, gamma subunit Thein_1139 PF00547 Urease, gamma subunit Thein_1140 PF02954 Bacterial regulatory protein, Fis family Thein_1140 PF00158 Sigma-54 interaction domain Thein_1140 PF13185 GAF domain Thein_1142 PF02653 Branched-chain amino acid transport system / permease component Thein_1144 PF00005 ABC transporter Thein_1144 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thein_1145 PF00005 ABC transporter Thein_1152 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thein_1153 PF00085 Thioredoxin Thein_1156 PF04127 DNA / pantothenate metabolism flavoprotein Thein_1156 PF02441 Flavoprotein Thein_1157 PF00557 Metallopeptidase family M24 Thein_1157 PF01321 Creatinase/Prolidase N-terminal domain Thein_1159 PF01728 FtsJ-like methyltransferase Thein_1160 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thein_1160 PF00005 ABC transporter Thein_1162 PF00072 Response regulator receiver domain Thein_1162 PF02954 Bacterial regulatory protein, Fis family Thein_1162 PF00158 Sigma-54 interaction domain Thein_1163 PF00989 PAS fold Thein_1163 PF00672 HAMP domain Thein_1163 PF00512 His Kinase A (phospho-acceptor) domain Thein_1163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1165 PF01996 F420-0:Gamma-glutamyl ligase Thein_1165 PF00881 Nitroreductase family Thein_1167 PF17284 Spermidine synthase tetramerisation domain Thein_1168 PF14306 PUA-like domain Thein_1168 PF01747 ATP-sulfurylase Thein_1170 PF07075 Protein of unknown function (DUF1343) Thein_1173 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_1173 PF00483 Nucleotidyl transferase Thein_1174 PF00381 PTS HPr component phosphorylation site Thein_1175 PF00391 PEP-utilising enzyme, mobile domain Thein_1175 PF05524 PEP-utilising enzyme, N-terminal Thein_1175 PF02896 PEP-utilising enzyme, TIM barrel domain Thein_1179 PF00005 ABC transporter Thein_1180 PF02405 Permease MlaE Thein_1181 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thein_1184 PF01569 PAP2 superfamily Thein_1191 PF00692 dUTPase Thein_1194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1194 PF00989 PAS fold Thein_1194 PF00512 His Kinase A (phospho-acceptor) domain Thein_1195 PF02527 rRNA small subunit methyltransferase G Thein_1197 PF17757 UvrB interaction domain Thein_1197 PF12344 Ultra-violet resistance protein B Thein_1197 PF02151 UvrB/uvrC motif Thein_1197 PF04851 Type III restriction enzyme, res subunit Thein_1197 PF00271 Helicase conserved C-terminal domain Thein_1198 PF00849 RNA pseudouridylate synthase Thein_1203 PF01628 HrcA protein C terminal domain Thein_1203 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Thein_1204 PF01025 GrpE Thein_1205 PF00012 Hsp70 protein Thein_1207 PF01467 Cytidylyltransferase-like Thein_1209 PF00596 Class II Aldolase and Adducin N-terminal domain Thein_1210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thein_1210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thein_1210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thein_1212 PF00475 Imidazoleglycerol-phosphate dehydratase Thein_1214 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thein_1214 PF02844 Phosphoribosylglycinamide synthetase, N domain Thein_1214 PF02843 Phosphoribosylglycinamide synthetase, C domain Thein_1217 PF01370 NAD dependent epimerase/dehydratase family Thein_1218 PF01380 SIS domain Thein_1219 PF02397 Bacterial sugar transferase Thein_1221 PF13401 AAA domain Thein_1221 PF01471 Putative peptidoglycan binding domain Thein_1222 PF02706 Chain length determinant protein Thein_1222 PF13614 AAA domain Thein_1222 PF13807 G-rich domain on putative tyrosine kinase Thein_1224 PF10531 SLBB domain Thein_1224 PF02563 Polysaccharide biosynthesis/export protein Thein_1226 PF04055 Radical SAM superfamily Thein_1227 PF00521 DNA gyrase/topoisomerase IV, subunit A Thein_1227 PF03989 DNA gyrase C-terminal domain, beta-propeller Thein_1228 PF00753 Metallo-beta-lactamase superfamily Thein_1229 PF00085 Thioredoxin Thein_1229 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thein_1230 PF03884 DNA gyrase inhibitor YacG Thein_1232 PF02132 RecR protein Thein_1232 PF13662 Toprim domain Thein_1233 PF02575 YbaB/EbfC DNA-binding family Thein_1234 PF12169 DNA polymerase III subunits gamma and tau domain III Thein_1237 PF01381 Helix-turn-helix Thein_1240 PF02881 SRP54-type protein, helical bundle domain Thein_1240 PF02978 Signal peptide binding domain Thein_1240 PF00448 SRP54-type protein, GTPase domain Thein_1241 PF00886 Ribosomal protein S16 Thein_1243 PF01782 RimM N-terminal domain Thein_1243 PF05239 PRC-barrel domain Thein_1244 PF16177 Acetyl-coenzyme A synthetase N-terminus Thein_1244 PF13193 AMP-binding enzyme C-terminal domain Thein_1244 PF00501 AMP-binding enzyme Thein_1245 PF01458 Uncharacterized protein family (UPF0051) Thein_1246 PF00005 ABC transporter Thein_1247 PF01168 Alanine racemase, N-terminal domain Thein_1247 PF00842 Alanine racemase, C-terminal domain Thein_1248 PF02416 mttA/Hcf106 family Thein_1251 PF13247 4Fe-4S dicluster domain Thein_1253 PF00989 PAS fold Thein_1253 PF02954 Bacterial regulatory protein, Fis family Thein_1253 PF00158 Sigma-54 interaction domain Thein_1258 PF01926 50S ribosome-binding GTPase Thein_1261 PF02926 THUMP domain Thein_1261 PF01170 Putative RNA methylase family UPF0020 Thein_1262 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thein_1262 PF10996 Beta-Casp domain Thein_1262 PF00753 Metallo-beta-lactamase superfamily Thein_1264 PF06750 Bacterial Peptidase A24 N-terminal domain Thein_1264 PF01478 Type IV leader peptidase family Thein_1266 PF05164 Cell division protein ZapA Thein_1267 PF01966 HD domain Thein_1267 PF00013 KH domain Thein_1267 PF12072 Domain of unknown function (DUF3552) Thein_1268 PF13277 YmdB-like protein Thein_1269 PF01475 Ferric uptake regulator family Thein_1270 PF00589 Phage integrase family Thein_1270 PF13495 Phage integrase, N-terminal SAM-like domain Thein_1279 PF00571 CBS domain Thein_1279 PF01380 SIS domain Thein_1280 PF00534 Glycosyl transferases group 1 Thein_1280 PF08323 Starch synthase catalytic domain Thein_1281 PF00291 Pyridoxal-phosphate dependent enzyme Thein_1282 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thein_1282 PF01078 Magnesium chelatase, subunit ChlI Thein_1283 PF03600 Citrate transporter Thein_1285 PF01142 tRNA pseudouridine synthase D (TruD) Thein_1286 PF01043 SecA preprotein cross-linking domain Thein_1286 PF07517 SecA DEAD-like domain Thein_1286 PF02810 SEC-C motif Thein_1286 PF07516 SecA Wing and Scaffold domain Thein_1287 PF01618 MotA/TolQ/ExbB proton channel family Thein_1288 PF02621 Menaquinone biosynthesis Thein_1290 PF01895 PhoU domain Thein_1291 PF00005 ABC transporter Thein_1292 PF00528 Binding-protein-dependent transport system inner membrane component Thein_1293 PF00528 Binding-protein-dependent transport system inner membrane component Thein_1297 PF00144 Beta-lactamase Thein_1298 PF01430 Hsp33 protein Thein_1299 PF03807 NADP oxidoreductase coenzyme F420-dependent Thein_1299 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thein_1300 PF00206 Lyase Thein_1300 PF14698 Argininosuccinate lyase C-terminal Thein_1301 PF13393 Histidyl-tRNA synthetase Thein_1301 PF03129 Anticodon binding domain Thein_1306 PF00119 ATP synthase A chain Thein_1307 PF00137 ATP synthase subunit C Thein_1309 PF13458 Periplasmic binding protein Thein_1311 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Thein_1312 PF08645 Polynucleotide kinase 3 phosphatase Thein_1313 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Thein_1314 PF00977 Histidine biosynthesis protein Thein_1315 PF00575 S1 RNA binding domain Thein_1315 PF08206 Ribonuclease B OB domain Thein_1315 PF17876 Cold shock domain Thein_1315 PF00773 RNB domain Thein_1316 PF00990 Diguanylate cyclase, GGDEF domain Thein_1316 PF07694 5TMR of 5TMR-LYT Thein_1317 PF13344 Haloacid dehalogenase-like hydrolase Thein_1317 PF00293 NUDIX domain Thein_1318 PF00459 Inositol monophosphatase family Thein_1319 PF01008 Initiation factor 2 subunit family Thein_1320 PF02934 GatB/GatE catalytic domain Thein_1320 PF02637 GatB domain Thein_1321 PF01814 Hemerythrin HHE cation binding domain Thein_1322 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thein_1323 PF01875 Memo-like protein Thein_1325 PF04085 rod shape-determining protein MreC Thein_1327 PF03717 Penicillin-binding Protein dimerisation domain Thein_1327 PF00905 Penicillin binding protein transpeptidase domain Thein_1328 PF01098 Cell cycle protein Thein_1331 PF00213 ATP synthase delta (OSCP) subunit Thein_1332 PF00306 ATP synthase alpha/beta chain, C terminal domain Thein_1332 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thein_1332 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thein_1333 PF00231 ATP synthase Thein_1334 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thein_1334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thein_1335 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Thein_1335 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Thein_1336 PF14602 Hexapeptide repeat of succinyl-transferase Thein_1336 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_1336 PF00483 Nucleotidyl transferase Thein_1337 PF00588 SpoU rRNA Methylase family Thein_1337 PF12105 SpoU, rRNA methylase, C-terminal Thein_1338 PF13635 Domain of unknown function (DUF4143) Thein_1338 PF13173 AAA domain Thein_1348 PF13173 AAA domain Thein_1348 PF13635 Domain of unknown function (DUF4143) Thein_1349 PF09827 CRISPR associated protein Cas2 Thein_1351 PF01867 CRISPR associated protein Cas1 Thein_1352 PF09827 CRISPR associated protein Cas2 Thein_1354 PF02540 NAD synthase Thein_1356 PF00571 CBS domain Thein_1356 PF00478 IMP dehydrogenase / GMP reductase domain Thein_1357 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thein_1362 PF08241 Methyltransferase domain Thein_1365 PF13495 Phage integrase, N-terminal SAM-like domain Thein_1365 PF00589 Phage integrase family Thein_1366 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thein_1366 PF00037 4Fe-4S binding domain Thein_1366 PF02256 Iron hydrogenase small subunit Thein_1366 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thein_1368 PF00448 SRP54-type protein, GTPase domain Thein_1368 PF02881 SRP54-type protein, helical bundle domain Thein_1369 PF01063 Amino-transferase class IV Thein_1370 PF00158 Sigma-54 interaction domain Thein_1370 PF00072 Response regulator receiver domain Thein_1370 PF02954 Bacterial regulatory protein, Fis family Thein_1371 PF00005 ABC transporter Thein_1373 PF00572 Ribosomal protein L13 Thein_1374 PF00380 Ribosomal protein S9/S16 Thein_1375 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thein_1375 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thein_1377 PF00155 Aminotransferase class I and II Thein_1378 PF07715 TonB-dependent Receptor Plug Domain Thein_1378 PF00593 TonB dependent receptor Thein_1380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1380 PF18415 Histidine kinase receptor ArcB trans-membrane domain Thein_1380 PF00512 His Kinase A (phospho-acceptor) domain Thein_1380 PF00072 Response regulator receiver domain Thein_1380 PF00989 PAS fold Thein_1380 PF01627 Hpt domain Thein_1381 PF08264 Anticodon-binding domain of tRNA Thein_1381 PF00133 tRNA synthetases class I (I, L, M and V) Thein_1381 PF06827 Zinc finger found in FPG and IleRS Thein_1382 PF01252 Signal peptidase (SPase) II Thein_1384 PF00166 Chaperonin 10 Kd subunit Thein_1385 PF00118 TCP-1/cpn60 chaperonin family Thein_1387 PF13181 Tetratricopeptide repeat Thein_1387 PF01435 Peptidase family M48 Thein_1388 PF14492 Elongation Factor G, domain II Thein_1388 PF00679 Elongation factor G C-terminus Thein_1388 PF03144 Elongation factor Tu domain 2 Thein_1388 PF00009 Elongation factor Tu GTP binding domain Thein_1388 PF03764 Elongation factor G, domain IV Thein_1389 PF02660 Glycerol-3-phosphate acyltransferase Thein_1392 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thein_1392 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thein_1395 PF00899 ThiF family Thein_1397 PF00793 DAHP synthetase I family Thein_1400 PF03968 OstA-like protein Thein_1400 PF04453 LPS transport system D Thein_1401 PF00005 ABC transporter Thein_1402 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thein_1402 PF04963 Sigma-54 factor, core binding domain Thein_1402 PF04552 Sigma-54, DNA binding domain Thein_1403 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thein_1403 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Thein_1404 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thein_1407 PF00583 Acetyltransferase (GNAT) family Thein_1408 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thein_1408 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thein_1409 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thein_1409 PF02896 PEP-utilising enzyme, TIM barrel domain Thein_1409 PF00391 PEP-utilising enzyme, mobile domain Thein_1410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thein_1410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thein_1411 PF00162 Phosphoglycerate kinase Thein_1412 PF00121 Triosephosphate isomerase Thein_1413 PF03840 Preprotein translocase SecG subunit Thein_1415 PF01578 Cytochrome C assembly protein Thein_1417 PF00520 Ion transport protein Thein_1417 PF00027 Cyclic nucleotide-binding domain Thein_1420 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thein_1420 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thein_1421 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thein_1422 PF03063 Prismane/CO dehydrogenase family Thein_1424 PF05362 Lon protease (S16) C-terminal proteolytic domain Thein_1424 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thein_1424 PF00004 ATPase family associated with various cellular activities (AAA) Thein_1425 PF02735 Ku70/Ku80 beta-barrel domain Thein_1426 PF01068 ATP dependent DNA ligase domain Thein_1426 PF04679 ATP dependent DNA ligase C terminal region Thein_1427 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Thein_1427 PF00056 lactate/malate dehydrogenase, NAD binding domain Thein_1433 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Thein_1434 PF00970 Oxidoreductase FAD-binding domain Thein_1434 PF00175 Oxidoreductase NAD-binding domain Thein_1434 PF00111 2Fe-2S iron-sulfur cluster binding domain Thein_1442 PF02310 B12 binding domain Thein_1442 PF04055 Radical SAM superfamily Thein_1445 PF02633 Creatinine amidohydrolase Thein_1446 PF00578 AhpC/TSA family Thein_1448 PF00512 His Kinase A (phospho-acceptor) domain Thein_1448 PF08448 PAS fold Thein_1448 PF13188 PAS domain Thein_1448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1448 PF00072 Response regulator receiver domain Thein_1451 PF17915 Reverse gyrase zinc finger Thein_1451 PF00270 DEAD/DEAH box helicase Thein_1451 PF01131 DNA topoisomerase Thein_1451 PF01751 Toprim domain Thein_1452 PF00072 Response regulator receiver domain Thein_1452 PF03861 ANTAR domain Thein_1454 PF02091 Glycyl-tRNA synthetase alpha subunit Thein_1455 PF05746 DALR anticodon binding domain Thein_1455 PF02092 Glycyl-tRNA synthetase beta subunit Thein_1458 PF00164 Ribosomal protein S12/S23 Thein_1459 PF00177 Ribosomal protein S7p/S5e Thein_1460 PF00009 Elongation factor Tu GTP binding domain Thein_1460 PF03764 Elongation factor G, domain IV Thein_1460 PF14492 Elongation Factor G, domain II Thein_1460 PF00679 Elongation factor G C-terminus Thein_1460 PF03144 Elongation factor Tu domain 2 Thein_1461 PF03144 Elongation factor Tu domain 2 Thein_1461 PF00009 Elongation factor Tu GTP binding domain Thein_1461 PF03143 Elongation factor Tu C-terminal domain Thein_1462 PF00338 Ribosomal protein S10p/S20e Thein_1463 PF00297 Ribosomal protein L3 Thein_1464 PF00573 Ribosomal protein L4/L1 family Thein_1465 PF00276 Ribosomal protein L23 Thein_1466 PF03947 Ribosomal Proteins L2, C-terminal domain Thein_1466 PF00181 Ribosomal Proteins L2, RNA binding domain Thein_1467 PF00203 Ribosomal protein S19 Thein_1468 PF00237 Ribosomal protein L22p/L17e Thein_1469 PF00189 Ribosomal protein S3, C-terminal domain Thein_1469 PF07650 KH domain Thein_1470 PF00252 Ribosomal protein L16p/L10e Thein_1471 PF00831 Ribosomal L29 protein Thein_1472 PF00366 Ribosomal protein S17 Thein_1473 PF00238 Ribosomal protein L14p/L23e Thein_1474 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thein_1474 PF00467 KOW motif Thein_1475 PF00281 Ribosomal protein L5 Thein_1475 PF00673 ribosomal L5P family C-terminus Thein_1476 PF00253 Ribosomal protein S14p/S29e Thein_1477 PF00410 Ribosomal protein S8 Thein_1479 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thein_1480 PF00333 Ribosomal protein S5, N-terminal domain Thein_1480 PF03719 Ribosomal protein S5, C-terminal domain Thein_1481 PF00327 Ribosomal protein L30p/L7e Thein_1482 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Thein_1483 PF00344 SecY translocase Thein_1484 PF05191 Adenylate kinase, active site lid Thein_1485 PF00557 Metallopeptidase family M24 Thein_1486 PF01176 Translation initiation factor 1A / IF-1 Thein_1487 PF00416 Ribosomal protein S13/S18 Thein_1488 PF00411 Ribosomal protein S11 Thein_1489 PF01479 S4 domain Thein_1489 PF00163 Ribosomal protein S4/S9 N-terminal domain Thein_1490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thein_1490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thein_1490 PF01000 RNA polymerase Rpb3/RpoA insert domain Thein_1491 PF01196 Ribosomal protein L17 Thein_1492 PF00149 Calcineurin-like phosphoesterase Thein_1493 PF16193 AAA C-terminal domain Thein_1493 PF00004 ATPase family associated with various cellular activities (AAA) Thein_1493 PF12002 MgsA AAA+ ATPase C terminal Thein_1494 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Thein_1496 PF00909 Ammonium Transporter Family Thein_1505 PF04851 Type III restriction enzyme, res subunit Thein_1505 PF00271 Helicase conserved C-terminal domain Thein_1514 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thein_1514 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thein_1515 PF13476 AAA domain Thein_1517 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_1517 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Thein_1518 PF07977 FabA-like domain Thein_1519 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Thein_1519 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_1521 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thein_1521 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thein_1522 PF02684 Lipid-A-disaccharide synthetase Thein_1524 PF13439 Glycosyltransferase Family 4 Thein_1524 PF00534 Glycosyl transferases group 1 Thein_1525 PF02146 Sir2 family Thein_1526 PF00679 Elongation factor G C-terminus Thein_1526 PF14492 Elongation Factor G, domain II Thein_1526 PF03764 Elongation factor G, domain IV Thein_1526 PF00009 Elongation factor Tu GTP binding domain Thein_1526 PF03144 Elongation factor Tu domain 2 Thein_1527 PF00994 Probable molybdopterin binding domain Thein_1528 PF00582 Universal stress protein family Thein_1530 PF00288 GHMP kinases N terminal domain Thein_1530 PF08544 GHMP kinases C terminal Thein_1531 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thein_1531 PF14572 Phosphoribosyl synthetase-associated domain Thein_1532 PF14693 Ribosomal protein TL5, C-terminal domain Thein_1532 PF01386 Ribosomal L25p family Thein_1533 PF01195 Peptidyl-tRNA hydrolase Thein_1534 PF01661 Macro domain Thein_1535 PF00226 DnaJ domain Thein_1535 PF01556 DnaJ C terminal domain Thein_1535 PF00684 DnaJ central domain Thein_1536 PF13742 OB-fold nucleic acid binding domain Thein_1536 PF02601 Exonuclease VII, large subunit Thein_1537 PF01551 Peptidase family M23 Thein_1539 PF00348 Polyprenyl synthetase Thein_1540 PF00999 Sodium/hydrogen exchanger family Thein_1541 PF02779 Transketolase, pyrimidine binding domain Thein_1541 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thein_1541 PF02780 Transketolase, C-terminal domain Thein_1546 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Thein_1552 PF13247 4Fe-4S dicluster domain Thein_1554 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thein_1554 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thein_1558 PF01207 Dihydrouridine synthase (Dus) Thein_1561 PF02127 Aminopeptidase I zinc metalloprotease (M18) Thein_1566 PF02540 NAD synthase Thein_1566 PF00117 Glutamine amidotransferase class-I Thein_1566 PF00958 GMP synthase C terminal domain Thein_1567 PF02915 Rubrerythrin Thein_1568 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thein_1568 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thein_1571 PF11867 Domain of unknown function (DUF3387) Thein_1571 PF18766 SWI2/SNF2 ATPase Thein_1571 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Thein_1574 PF01420 Type I restriction modification DNA specificity domain Thein_1575 PF00082 Subtilase family Thein_1576 PF00004 ATPase family associated with various cellular activities (AAA) Thein_1577 PF06250 YhcG PDDEXK nuclease domain Thein_1577 PF17761 DUF1016 N-terminal domain Thein_1578 PF02384 N-6 DNA Methylase Thein_1582 PF00072 Response regulator receiver domain Thein_1583 PF01966 HD domain Thein_1585 PF02481 DNA recombination-mediator protein A Thein_1585 PF17782 DprA winged helix domain Thein_1586 PF01396 Topoisomerase DNA binding C4 zinc finger Thein_1586 PF01751 Toprim domain Thein_1586 PF01131 DNA topoisomerase Thein_1588 PF02416 mttA/Hcf106 family Thein_1589 PF05140 ResB-like family Thein_1590 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thein_1592 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thein_1592 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thein_1592 PF03129 Anticodon binding domain Thein_1593 PF05198 Translation initiation factor IF-3, N-terminal domain Thein_1593 PF00707 Translation initiation factor IF-3, C-terminal domain Thein_1595 PF00453 Ribosomal protein L20 Thein_1597 PF03484 tRNA synthetase B5 domain Thein_1597 PF03147 Ferredoxin-fold anticodon binding domain Thein_1597 PF03483 B3/4 domain Thein_1597 PF01588 Putative tRNA binding domain Thein_1597 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thein_1598 PF00216 Bacterial DNA-binding protein Thein_1600 PF12697 Alpha/beta hydrolase family Thein_1601 PF13579 Glycosyl transferase 4-like domain Thein_1601 PF00534 Glycosyl transferases group 1 Thein_1602 PF00534 Glycosyl transferases group 1 Thein_1602 PF13439 Glycosyltransferase Family 4 Thein_1607 PF00689 Cation transporting ATPase, C-terminus Thein_1607 PF00690 Cation transporter/ATPase, N-terminus Thein_1608 PF02772 S-adenosylmethionine synthetase, central domain Thein_1608 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thein_1608 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thein_1612 PF16199 Radical_SAM C-terminal domain Thein_1612 PF04055 Radical SAM superfamily Thein_1615 PF00330 Aconitase family (aconitate hydratase) Thein_1616 PF03699 Uncharacterised protein family (UPF0182) Thein_1618 PF00989 PAS fold Thein_1618 PF00512 His Kinase A (phospho-acceptor) domain Thein_1618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1619 PF00072 Response regulator receiver domain Thein_1619 PF00158 Sigma-54 interaction domain Thein_1619 PF02954 Bacterial regulatory protein, Fis family Thein_1622 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thein_1622 PF01568 Molydopterin dinucleotide binding domain Thein_1622 PF00384 Molybdopterin oxidoreductase Thein_1622 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thein_1623 PF12800 4Fe-4S binding domain Thein_1623 PF13247 4Fe-4S dicluster domain Thein_1624 PF13247 4Fe-4S dicluster domain Thein_1625 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Thein_1627 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thein_1628 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thein_1629 PF00146 NADH dehydrogenase Thein_1630 PF12838 4Fe-4S dicluster domain Thein_1631 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Thein_1632 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thein_1633 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Thein_1633 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thein_1633 PF00361 Proton-conducting membrane transporter Thein_1634 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Thein_1634 PF00361 Proton-conducting membrane transporter Thein_1635 PF00361 Proton-conducting membrane transporter Thein_1636 PF00501 AMP-binding enzyme Thein_1636 PF13193 AMP-binding enzyme C-terminal domain Thein_1638 PF01168 Alanine racemase, N-terminal domain Thein_1640 PF02580 D-Tyr-tRNA(Tyr) deacylase Thein_1643 PF00575 S1 RNA binding domain Thein_1643 PF00013 KH domain Thein_1643 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thein_1643 PF01138 3' exoribonuclease family, domain 1 Thein_1643 PF03725 3' exoribonuclease family, domain 2 Thein_1646 PF08402 TOBE domain Thein_1646 PF00005 ABC transporter Thein_1647 PF00528 Binding-protein-dependent transport system inner membrane component Thein_1651 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thein_1651 PF00753 Metallo-beta-lactamase superfamily Thein_1652 PF00005 ABC transporter Thein_1653 PF01061 ABC-2 type transporter Thein_1655 PF12706 Beta-lactamase superfamily domain Thein_1656 PF00425 chorismate binding enzyme Thein_1656 PF04715 Anthranilate synthase component I, N terminal region Thein_1657 PF00005 ABC transporter Thein_1657 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thein_1658 PF00005 ABC transporter Thein_1658 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thein_1660 PF00528 Binding-protein-dependent transport system inner membrane component Thein_1661 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thein_1662 PF01966 HD domain Thein_1662 PF00072 Response regulator receiver domain Thein_1663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thein_1667 PF01966 HD domain Thein_1668 PF01321 Creatinase/Prolidase N-terminal domain Thein_1668 PF00557 Metallopeptidase family M24 Thein_1670 PF00486 Transcriptional regulatory protein, C terminal Thein_1670 PF00072 Response regulator receiver domain Thein_1674 PF04225 Opacity-associated protein A LysM-like domain Thein_1674 PF01551 Peptidase family M23 Thein_1676 PF04452 RNA methyltransferase Thein_1677 PF01435 Peptidase family M48 Thein_1679 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Thein_1680 PF17746 SfsA N-terminal OB domain Thein_1680 PF03749 Sugar fermentation stimulation protein RE domain Thein_1682 PF16363 GDP-mannose 4,6 dehydratase Thein_1683 PF00490 Delta-aminolevulinic acid dehydratase Thein_1685 PF01894 Uncharacterised protein family UPF0047 Thein_1686 PF00436 Single-strand binding protein family Thein_1687 PF06470 SMC proteins Flexible Hinge Domain Thein_1687 PF02463 RecF/RecN/SMC N terminal domain Thein_1688 PF01281 Ribosomal protein L9, N-terminal domain Thein_1688 PF03948 Ribosomal protein L9, C-terminal domain Thein_1689 PF01084 Ribosomal protein S18 Thein_1690 PF01250 Ribosomal protein S6 Thein_1691 PF01725 Ham1 family Thein_1692 PF01138 3' exoribonuclease family, domain 1 Thein_1692 PF03725 3' exoribonuclease family, domain 2 Thein_1693 PF12801 4Fe-4S binding domain Thein_1693 PF04205 FMN-binding domain Thein_1696 PF00171 Aldehyde dehydrogenase family Thein_1697 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thein_1699 PF03975 CheD chemotactic sensory transduction Thein_1700 PF01966 HD domain Thein_1700 PF12072 Domain of unknown function (DUF3552) Thein_1701 PF01312 FlhB HrpN YscU SpaS Family Thein_1702 PF12111 Polyribonucleotide phosphorylase C terminal Thein_1702 PF10150 Ribonuclease E/G family Thein_1702 PF00575 S1 RNA binding domain Thein_1708 PF02321 Outer membrane efflux protein Thein_1709 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thein_1709 PF00529 HlyD membrane-fusion protein of T1SS Thein_1710 PF00873 AcrB/AcrD/AcrF family Thein_1712 PF00005 ABC transporter Thein_1712 PF17755 UvrA DNA-binding domain Thein_1712 PF17760 UvrA interaction domain Thein_1714 PF04055 Radical SAM superfamily Thein_1714 PF06969 HemN C-terminal domain Thein_1716 PF01966 HD domain Thein_1717 PF01612 3'-5' exonuclease Thein_1717 PF01367 5'-3' exonuclease, C-terminal SAM fold Thein_1717 PF00476 DNA polymerase family A Thein_1717 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Thein_1719 PF00588 SpoU rRNA Methylase family Thein_1720 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thein_1720 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thein_1721 PF02504 Fatty acid synthesis protein Thein_1722 PF01783 Ribosomal L32p protein family Thein_1723 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thein_1725 PF00216 Bacterial DNA-binding protein Thein_1728 PF17820 PDZ domain Thein_1728 PF13180 PDZ domain Thein_1730 PF13380 CoA binding domain Thein_1736 PF00733 Asparagine synthase Thein_1736 PF13537 Glutamine amidotransferase domain Thein_1737 PF01040 UbiA prenyltransferase family Thein_1739 PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system Thein_1742 PF09820 Predicted AAA-ATPase Thein_1742 PF08011 PD-(D/E)XK nuclease superfamily Thein_1745 PF00534 Glycosyl transferases group 1 Thein_1745 PF13439 Glycosyltransferase Family 4 Thein_1747 PF01541 GIY-YIG catalytic domain Thein_1750 PF13439 Glycosyltransferase Family 4 Thein_1750 PF00534 Glycosyl transferases group 1 Thein_1751 PF00535 Glycosyl transferase family 2 Thein_1753 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thein_1753 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thein_1754 PF00535 Glycosyl transferase family 2 Thein_1762 PF00245 Alkaline phosphatase Thein_1766 PF13735 tRNA nucleotidyltransferase domain 2 putative Thein_1766 PF01743 Poly A polymerase head domain Thein_1766 PF12627 Probable RNA and SrmB- binding site of polymerase A Thein_1769 PF00654 Voltage gated chloride channel Thein_1770 PF02562 PhoH-like protein Thein_1772 PF02325 YGGT family Thein_1773 PF05103 DivIVA protein Thein_1774 PF02594 Uncharacterised ACR, YggU family COG1872 Thein_1775 PF13419 Haloacid dehalogenase-like hydrolase Thein_1776 PF01189 16S rRNA methyltransferase RsmB/F Thein_1776 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Thein_1776 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Thein_1784 PF00374 Nickel-dependent hydrogenase Thein_1785 PF01750 Hydrogenase maturation protease Thein_1805 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thein_1805 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thein_1806 PF02954 Bacterial regulatory protein, Fis family Thein_1806 PF00158 Sigma-54 interaction domain Thein_1806 PF00072 Response regulator receiver domain Thein_1808 PF00072 Response regulator receiver domain Thein_1808 PF02954 Bacterial regulatory protein, Fis family Thein_1808 PF00158 Sigma-54 interaction domain Thein_1809 PF00460 Flagella basal body rod protein Thein_1810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_1810 PF00460 Flagella basal body rod protein Thein_1811 PF02049 Flagellar hook-basal body complex protein FliE Thein_1812 PF01514 Secretory protein of YscJ/FliF family Thein_1812 PF08345 Flagellar M-ring protein C-terminal Thein_1813 PF14841 FliG middle domain Thein_1813 PF01706 FliG C-terminal domain Thein_1813 PF14842 FliG N-terminal domain Thein_1814 PF02108 Flagellar assembly protein FliH Thein_1815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thein_1815 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thein_1815 PF18269 T3SS EscN ATPase C-terminal domain Thein_1820 PF13247 4Fe-4S dicluster domain Thein_1826 PF16916 Dimerisation domain of Zinc Transporter Thein_1826 PF01545 Cation efflux family Thein_1827 PF08264 Anticodon-binding domain of tRNA Thein_1827 PF00133 tRNA synthetases class I (I, L, M and V) Thein_1827 PF09334 tRNA synthetases class I (M) Thein_1827 PF13603 Leucyl-tRNA synthetase, Domain 2 Thein_1828 PF00180 Isocitrate/isopropylmalate dehydrogenase Thein_1829 PF01145 SPFH domain / Band 7 family Thein_1831 PF02954 Bacterial regulatory protein, Fis family Thein_1831 PF00072 Response regulator receiver domain Thein_1831 PF00158 Sigma-54 interaction domain Thein_1832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1832 PF00512 His Kinase A (phospho-acceptor) domain Thein_1836 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thein_1837 PF01256 Carbohydrate kinase Thein_1837 PF03853 YjeF-related protein N-terminus Thein_1838 PF01171 PP-loop family Thein_1838 PF11734 TilS substrate C-terminal domain Thein_1840 PF03186 CobD/Cbib protein Thein_1841 PF02277 Phosphoribosyltransferase Thein_1842 PF02654 Cobalamin-5-phosphate synthase Thein_1844 PF01177 Asp/Glu/Hydantoin racemase Thein_1845 PF00301 Rubredoxin Thein_1845 PF01613 Flavin reductase like domain Thein_1849 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thein_1849 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thein_1850 PF01209 ubiE/COQ5 methyltransferase family Thein_1851 PF02559 CarD-like/TRCF domain Thein_1853 PF00994 Probable molybdopterin binding domain Thein_1853 PF03454 MoeA C-terminal region (domain IV) Thein_1853 PF03453 MoeA N-terminal region (domain I and II) Thein_1855 PF00694 Aconitase C-terminal domain Thein_1858 PF00005 ABC transporter Thein_1858 PF08402 TOBE domain Thein_1859 PF00005 ABC transporter Thein_1859 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thein_1862 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thein_1862 PF05362 Lon protease (S16) C-terminal proteolytic domain Thein_1862 PF00004 ATPase family associated with various cellular activities (AAA) Thein_1863 PF00950 ABC 3 transport family Thein_1864 PF00005 ABC transporter Thein_1866 PF00293 NUDIX domain Thein_1867 PF00206 Lyase Thein_1867 PF10397 Adenylosuccinate lyase C-terminus Thein_1868 PF12105 SpoU, rRNA methylase, C-terminal Thein_1868 PF00588 SpoU rRNA Methylase family Thein_1869 PF01479 S4 domain Thein_1869 PF00849 RNA pseudouridylate synthase Thein_1871 PF01121 Dephospho-CoA kinase Thein_1872 PF00994 Probable molybdopterin binding domain Thein_1872 PF03453 MoeA N-terminal region (domain I and II) Thein_1872 PF03454 MoeA C-terminal region (domain IV) Thein_1874 PF02675 S-adenosylmethionine decarboxylase Thein_1875 PF00491 Arginase family Thein_1876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_1876 PF00512 His Kinase A (phospho-acceptor) domain Thein_1877 PF00925 GTP cyclohydrolase II Thein_1877 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thein_1878 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thein_1881 PF11741 AMIN domain Thein_1881 PF00263 Bacterial type II and III secretion system protein Thein_1881 PF07660 Secretin and TonB N terminus short domain Thein_1881 PF03958 Bacterial type II/III secretion system short domain Thein_1885 PF13401 AAA domain Thein_1885 PF01471 Putative peptidoglycan binding domain Thein_1886 PF00482 Type II secretion system (T2SS), protein F Thein_1887 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thein_1887 PF00437 Type II/IV secretion system protein Thein_1888 PF00114 Pilin (bacterial filament) Thein_1888 PF07963 Prokaryotic N-terminal methylation motif Thein_1891 PF00860 Permease family Thein_1892 PF01950 Fructose-1,6-bisphosphatase Thein_1896 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thein_1896 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thein_1897 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thein_1897 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thein_1898 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thein_1900 PF01032 FecCD transport family Thein_1901 PF00005 ABC transporter Thein_1904 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thein_1905 PF01888 CbiD Thein_1906 PF02570 Precorrin-8X methylmutase Thein_1907 PF00850 Histone deacetylase domain Thein_1908 PF01914 MarC family integral membrane protein Thein_1909 PF03099 Biotin/lipoate A/B protein ligase family Thein_1909 PF08279 HTH domain Thein_1909 PF02237 Biotin protein ligase C terminal domain Thein_1910 PF04002 RadC-like JAB domain Thein_1911 PF02401 LytB protein Thein_1912 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thein_1914 PF02769 AIR synthase related protein, C-terminal domain Thein_1914 PF00586 AIR synthase related protein, N-terminal domain Thein_1915 PF01479 S4 domain Thein_1915 PF00579 tRNA synthetases class I (W and Y) Thein_1916 PF02646 RmuC family Thein_1918 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thein_1918 PF00205 Thiamine pyrophosphate enzyme, central domain Thein_1918 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thein_1919 PF01842 ACT domain Thein_1919 PF10369 Small subunit of acetolactate synthase Thein_1920 PF00690 Cation transporter/ATPase, N-terminus Thein_1920 PF00689 Cation transporting ATPase, C-terminus Thein_1921 PF08501 Shikimate dehydrogenase substrate binding domain Thein_1921 PF01488 Shikimate / quinate 5-dehydrogenase Thein_1921 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Thein_1922 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thein_1923 PF01202 Shikimate kinase Thein_1941 PF06122 Conjugative relaxosome accessory transposon protein Thein_1950 PF00436 Single-strand binding protein family Thein_1954 PF06834 TraU protein Thein_1960 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer Thein_1963 PF08401 Domain of unknown function (DUF1738) Thein_1963 PF13362 Toprim domain Thein_1963 PF18818 Metallopeptidase superfamily domain Thein_1980 PF02899 Phage integrase, N-terminal SAM-like domain Thein_1980 PF00589 Phage integrase family Thein_1981 PF02386 Cation transport protein Thein_1982 PF02080 TrkA-C domain Thein_1982 PF02254 TrkA-N domain Thein_1983 PF00815 Histidinol dehydrogenase Thein_1985 PF05681 Fumarate hydratase (Fumerase) Thein_1985 PF05683 Fumarase C-terminus Thein_1987 PF00709 Adenylosuccinate synthetase Thein_1988 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thein_1988 PF00289 Biotin carboxylase, N-terminal domain Thein_1988 PF02785 Biotin carboxylase C-terminal domain Thein_1989 PF17848 Acetyl-coA carboxylase zinc finger domain Thein_1989 PF01039 Carboxyl transferase domain Thein_1995 PF02472 Biopolymer transport protein ExbD/TolR Thein_1996 PF01618 MotA/TolQ/ExbB proton channel family Thein_1997 PF17863 AAA lid domain Thein_1997 PF01078 Magnesium chelatase, subunit ChlI Thein_1998 PF07728 AAA domain (dynein-related subfamily) Thein_1998 PF13519 von Willebrand factor type A domain Thein_1998 PF17863 AAA lid domain Thein_2002 PF00005 ABC transporter Thein_2009 PF07715 TonB-dependent Receptor Plug Domain Thein_2009 PF00593 TonB dependent receptor Thein_2010 PF01924 Hydrogenase formation hypA family Thein_2013 PF01649 Ribosomal protein S20 Thein_2014 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Thein_2014 PF01676 Metalloenzyme superfamily Thein_2015 PF00293 NUDIX domain Thein_2015 PF01467 Cytidylyltransferase-like Thein_2016 PF02110 Hydroxyethylthiazole kinase family Thein_2017 PF02581 Thiamine monophosphate synthase Thein_2018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thein_2018 PF03459 TOBE domain Thein_2019 PF00583 Acetyltransferase (GNAT) family Thein_2019 PF13607 Succinyl-CoA ligase like flavodoxin domain Thein_2019 PF13380 CoA binding domain Thein_2020 PF00850 Histone deacetylase domain Thein_2022 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Thein_2024 PF02754 Cysteine-rich domain Thein_2025 PF01565 FAD binding domain Thein_2025 PF02913 FAD linked oxidases, C-terminal domain Thein_2026 PF03480 Bacterial extracellular solute-binding protein, family 7 Thein_2028 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Thein_2029 PF02634 FdhD/NarQ family Thein_2030 PF00301 Rubredoxin Thein_2030 PF01613 Flavin reductase like domain Thein_2031 PF02811 PHP domain Thein_2031 PF14579 Helix-hairpin-helix motif Thein_2031 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thein_2031 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thein_2036 PF00149 Calcineurin-like phosphoesterase Thein_2038 PF02899 Phage integrase, N-terminal SAM-like domain Thein_2038 PF00589 Phage integrase family Thein_2039 PF01743 Poly A polymerase head domain Thein_2039 PF12626 Polymerase A arginine-rich C-terminus Thein_2039 PF12627 Probable RNA and SrmB- binding site of polymerase A Thein_2040 PF02163 Peptidase family M50 Thein_2043 PF00148 Nitrogenase component 1 type Oxidoreductase Thein_2043 PF08369 Proto-chlorophyllide reductase 57 kD subunit Thein_2045 PF09210 Domain of unknown function (DUF1957) Thein_2045 PF03065 Glycosyl hydrolase family 57 Thein_2046 PF02926 THUMP domain Thein_2046 PF02568 Thiamine biosynthesis protein (ThiI) Thein_2048 PF00924 Mechanosensitive ion channel Thein_2051 PF00902 Sec-independent protein translocase protein (TatC) Thein_2053 PF04107 Glutamate-cysteine ligase family 2(GCS2) Thein_2054 PF07687 Peptidase dimerisation domain Thein_2054 PF01546 Peptidase family M20/M25/M40 Thein_2055 PF01880 Desulfoferrodoxin Thein_2055 PF06397 Desulfoferrodoxin, N-terminal domain Thein_2056 PF00258 Flavodoxin Thein_2056 PF00753 Metallo-beta-lactamase superfamily Thein_2061 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thein_2061 PF17200 Single Cache domain 2 Thein_2061 PF00672 HAMP domain Thein_2062 PF02954 Bacterial regulatory protein, Fis family Thein_2062 PF00158 Sigma-54 interaction domain Thein_2062 PF00072 Response regulator receiver domain Thein_2063 PF00512 His Kinase A (phospho-acceptor) domain Thein_2063 PF00989 PAS fold Thein_2063 PF08447 PAS fold Thein_2063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_2064 PF00158 Sigma-54 interaction domain Thein_2064 PF00072 Response regulator receiver domain Thein_2065 PF02896 PEP-utilising enzyme, TIM barrel domain Thein_2065 PF00391 PEP-utilising enzyme, mobile domain Thein_2065 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thein_2067 PF01925 Sulfite exporter TauE/SafE Thein_2069 PF01593 Flavin containing amine oxidoreductase Thein_2073 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thein_2073 PF00175 Oxidoreductase NAD-binding domain Thein_2079 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thein_2079 PF01411 tRNA synthetases class II (A) Thein_2079 PF02272 DHHA1 domain Thein_2081 PF00149 Calcineurin-like phosphoesterase Thein_2081 PF02872 5'-nucleotidase, C-terminal domain Thein_2083 PF00132 Bacterial transferase hexapeptide (six repeats) Thein_2084 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thein_2084 PF00005 ABC transporter Thein_2085 PF00005 ABC transporter Thein_2086 PF00501 AMP-binding enzyme Thein_2086 PF14535 AMP-binding enzyme C-terminal domain Thein_2088 PF17820 PDZ domain Thein_2088 PF02163 Peptidase family M50 Thein_2089 PF13288 DXP reductoisomerase C-terminal domain Thein_2089 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thein_2089 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thein_2091 PF01255 Putative undecaprenyl diphosphate synthase Thein_2092 PF01765 Ribosome recycling factor Thein_2093 PF00696 Amino acid kinase family Thein_2094 PF00889 Elongation factor TS Thein_2095 PF00318 Ribosomal protein S2 Thein_2096 PF07559 Flagellar basal body protein FlaE Thein_2096 PF00460 Flagella basal body rod protein Thein_2096 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_2097 PF00460 Flagella basal body rod protein Thein_2097 PF07559 Flagellar basal body protein FlaE Thein_2097 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thein_2100 PF10431 C-terminal, D2-small domain, of ClpB protein Thein_2100 PF02861 Clp amino terminal domain, pathogenicity island component Thein_2100 PF00004 ATPase family associated with various cellular activities (AAA) Thein_2100 PF07724 AAA domain (Cdc48 subfamily) Thein_2100 PF17871 AAA lid domain Thein_2103 PF08241 Methyltransferase domain Thein_2103 PF04301 Protein of unknown function (DUF452) Thein_2105 PF00579 tRNA synthetases class I (W and Y) Thein_2106 PF13419 Haloacid dehalogenase-like hydrolase Thein_2107 PF00037 4Fe-4S binding domain Thein_2110 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Thein_2110 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thein_2111 PF09107 Elongation factor SelB, winged helix Thein_2111 PF09106 Elongation factor SelB, winged helix Thein_2111 PF09105 Elongation factor SelB, winged helix Thein_2111 PF03144 Elongation factor Tu domain 2 Thein_2111 PF00009 Elongation factor Tu GTP binding domain Thein_2114 PF02616 Segregation and condensation protein ScpA Thein_2116 PF01980 tRNA-methyltransferase O Thein_2117 PF02590 Predicted SPOUT methyltransferase Thein_2118 PF00535 Glycosyl transferase family 2 Thein_2120 PF01588 Putative tRNA binding domain Thein_2120 PF09334 tRNA synthetases class I (M) Thein_2120 PF00133 tRNA synthetases class I (I, L, M and V) Thein_2121 PF04468 PSP1 C-terminal conserved region Thein_2123 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thein_2124 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thein_2124 PF00437 Type II/IV secretion system protein Thein_2125 PF07963 Prokaryotic N-terminal methylation motif Thein_2125 PF08334 Type II secretion system (T2SS), protein G Thein_2133 PF00263 Bacterial type II and III secretion system protein Thein_2133 PF03958 Bacterial type II/III secretion system short domain Thein_2136 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thein_2136 PF02403 Seryl-tRNA synthetase N-terminal domain Thein_2137 PF01699 Sodium/calcium exchanger protein Thein_2138 PF01790 Prolipoprotein diacylglyceryl transferase Thein_2140 PF00483 Nucleotidyl transferase Thein_2142 PF00437 Type II/IV secretion system protein Thein_2143 PF00437 Type II/IV secretion system protein Thein_2144 PF00005 ABC transporter Thein_2146 PF01551 Peptidase family M23 Thein_2147 PF13180 PDZ domain Thein_2147 PF03572 Peptidase family S41 Thein_2148 PF04748 Divergent polysaccharide deacetylase Thein_2149 PF00155 Aminotransferase class I and II Thein_2150 PF02224 Cytidylate kinase Thein_2151 PF00535 Glycosyl transferase family 2 Thein_2154 PF02911 Formyl transferase, C-terminal domain Thein_2154 PF00551 Formyl transferase Thein_2155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thein_2155 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thein_2156 PF17760 UvrA interaction domain Thein_2156 PF00005 ABC transporter Thein_2156 PF17755 UvrA DNA-binding domain Thein_2157 PF01676 Metalloenzyme superfamily Thein_2157 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Thein_2159 PF00528 Binding-protein-dependent transport system inner membrane component Thein_2160 PF08402 TOBE domain Thein_2160 PF00005 ABC transporter Thein_2161 PF13416 Bacterial extracellular solute-binding protein Thein_2163 PF05175 Methyltransferase small domain Thein_2165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thein_2165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thein_2165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thein_2165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thein_2166 PF00672 HAMP domain Thein_2166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thein_2166 PF16591 Helical bimodular sensor domain Thein_2168 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Thein_2168 PF17768 RecJ OB domain Thein_2168 PF02272 DHHA1 domain Thein_2168 PF01368 DHH family Thein_2169 PF00216 Bacterial DNA-binding protein Thein_2170 PF03952 Enolase, N-terminal domain Thein_2170 PF00113 Enolase, C-terminal TIM barrel domain Thein_2172 PF03477 ATP cone domain Thein_2173 PF00301 Rubredoxin Thein_2178 PF12849 PBP superfamily domain Thein_2182 PF04060 Putative Fe-S cluster Thein_2182 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit Thein_2183 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit Thein_2183 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Thein_2184 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit Thein_2190 PF03063 Prismane/CO dehydrogenase family Thein_2191 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thein_2191 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thein_2192 PF01268 Formate--tetrahydrofolate ligase Thein_2196 PF00120 Glutamine synthetase, catalytic domain Thein_2196 PF03951 Glutamine synthetase, beta-Grasp domain Thein_2197 PF08335 GlnD PII-uridylyltransferase Thein_2197 PF01966 HD domain Thein_2197 PF01909 Nucleotidyltransferase domain Thein_2198 PF00543 Nitrogen regulatory protein P-II Thein_2200 PF06508 Queuosine biosynthesis protein QueC Thein_2201 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thein_2201 PF05221 S-adenosyl-L-homocysteine hydrolase Thein_2202 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thein_2202 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thein_2202 PF02772 S-adenosylmethionine synthetase, central domain Thein_2205 PF00814 Glycoprotease family Thein_2206 PF00398 Ribosomal RNA adenine dimethylase Thein_2207 PF00117 Glutamine amidotransferase class-I Thein_2208 PF01817 Chorismate mutase type II Thein_2208 PF00793 DAHP synthetase I family Thein_2209 PF01914 MarC family integral membrane protein Thein_2210 PF00899 ThiF family Thein_2212 PF00155 Aminotransferase class I and II Thein_2213 PF14535 AMP-binding enzyme C-terminal domain Thein_2213 PF00501 AMP-binding enzyme Thein_2214 PF01207 Dihydrouridine synthase (Dus) Thein_2216 PF00149 Calcineurin-like phosphoesterase Thein_2219 PF00672 HAMP domain Thein_2219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thein_2219 PF18698 Histidine kinase sensor domain Thein_2219 PF00512 His Kinase A (phospho-acceptor) domain Thein_2219 PF00989 PAS fold Thein_2220 PF00486 Transcriptional regulatory protein, C terminal Thein_2220 PF00072 Response regulator receiver domain Thein_2224 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thein_2224 PF00384 Molybdopterin oxidoreductase Thein_2224 PF01568 Molydopterin dinucleotide binding domain Thein_2226 PF07664 Ferrous iron transport protein B C terminus Thein_2226 PF04023 FeoA domain Thein_2226 PF02421 Ferrous iron transport protein B Thein_2226 PF07670 Nucleoside recognition Thein_2226 PF17910 FeoB cytosolic helical domain Thein_2228 PF01861 Branched-chain polyamine synthase A C-terminal domain Thein_2229 PF01402 Ribbon-helix-helix protein, copG family Thein_2229 PF08753 NikR C terminal nickel binding domain Thein_2232 PF03091 CutA1 divalent ion tolerance protein Thein_R0030 PF01668 SmpB protein