locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Thein_0001 Thein_0001 Thein_0001 258 1661 + chromosomal replication initiator protein DnaA COGs: COG0593 ATPase involved in DNA replication initiation~InterProIPR020591:IPR013317:IPR013159:IPR001957:IPR 003593:IPR018312~KEGG: dat:HRM2_18560 DnaA~PFAM: Chromosomal replication initiator DnaA%3B Chromosomal replication initiator DnaA domain~SMART: Chromosomal replication initiator DnaA domain%3B AAA ATPase~SPTR: Chromosomal replication initiator protein dnaA%3B~TIGRFAM: chromosomal replication initiator protein DnaA~IMG reference gene:2505283282~PFAM: DNA polymerase III polC-type N-terminus%3B domain%3B Bacterial dnaA protein~TIGRFAM: chromosomal replication initiator protein DnaA gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0001 Thein_0002 Thein_0002 Thein_0002 1558 2931 + FAD linked oxidase domain protein COGs: COG0277 FAD/FMN-containing dehydrogenase~InterPro IPR006094:IPR004113:IPR016166:IPR020904~KEGG: sfu:Sfum_0534 FAD linked oxidase domain-containing protein~PFAM: FAD linked oxidase domain protein~SPTR: FAD linked oxidase domain protein%3B~manually curated~IMG reference gene:2505283283~PFAM: FAD binding domain%3B FAD linked oxidases%2C C-terminal domain~TIGRFAM: glycolate oxidase%2C subunit GlcD gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0002 Thein_0003 Thein_0003 Thein_0003 2991 4874 + TonB-dependent receptor COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins~InterPro IPR012910:IPR000531~KEGG: nde:NIDE0547 putative TonB-dependent receptor~PFAM: TonB-dependent receptor%3B TonB-dependent receptor plug~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283284~PFAM: TonB-dependent Receptor Plug Domain%3B TonB dependent receptor gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0003 Thein_0004 Thein_0004 Thein_0004 4868 5764 + hypothetical protein COGs: COG2984 ABC-type uncharacterized transport system periplasmic component~KEGG: gur:Gura_2427 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283285~PFAM: ABC transporter substrate binding protein gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0004 Thein_0005 Thein_0005 Thein_0005 5764 7290 + integral membrane sensor signal transduction histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR004358:IPR003660:IPR003661:IPR003594:IPR 005467~KEGG: geo:Geob_1632 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SPTR: Cell cycle histidine kinase CckA%3B~IMG reference gene:2505283286~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0005 Thein_0006 Thein_0006 Thein_0006 7459 9120 - dihydroxy-acid dehydratase COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase~InterPro IPR000581:IPR004404:IPR020558~KEGG: sat:SYN_01708 dihydroxy-acid dehydratase~PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase~PRIAM: Dihydroxy-acid dehydratase~SPTR: Dihydroxy-acid dehydratase%3B~TIGRFAM: dihydroxy-acid dehydratase~IMG reference gene:2505283287~PFAM: Dehydratase family~TIGRFAM: dihydroxy-acid dehydratase gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0006 Thein_0007 Thein_0007 Thein_0007 9647 9871 + nitrogen-fixing NifU domain protein COGs: COG0694 Thioredoxin-like protein and domains~InterPro IPR001075~KEGG: drt:Dret_1408 nitrogen-fixing NifU domain protein~PFAM: nitrogen-fixing NifU domain protein~SPTR: Nitrogen-fixing NifU domain protein%3B~IMG reference gene:2505283288~PFAM: NifU-like domain gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0007 Thein_0008 Thein_0008 Thein_0008 9885 10157 + DNA-directed RNA polymerase%2C omega subunit InterPro IPR006110:IPR003716~KEGG: sfu:Sfum_1758 DNA-directed RNA polymerase%2C omega subunit~PFAM: RNA polymerase Rpb6~SPTR: DNA-directed RNA polymerase subunit omega%3B~TIGRFAM: DNA-directed RNA polymerase%2C omega subunit~IMG reference gene:2505283289~PFAM: RNA polymerase Rpb6~TIGRFAM: DNA-directed RNA polymerase%2C omega subunit gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0008 Thein_0009 Thein_0009 Thein_0009 10154 11260 + chaperone protein DnaJ COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterProIPR003095:IPR001623:IPR001305:IPR002939:IPR 012724:IPR018253~KEGG: sfu:Sfum_1756 chaperone protein DnaJ~PFAM: chaperone DnaJ domain protein%3B heat shock protein DnaJ domain protein%3B DnaJ central domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: Chaperone protein dnaJ%3B~TIGRFAM: chaperone protein DnaJ~IMG reference gene:2505283290~PFAM: DnaJ C terminal region%3B DnaJ domain%3B DnaJ central domain (4 repeats)~TIGRFAM: chaperone protein DnaJ gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0009 Thein_0010 Thein_0010 Thein_0010 11257 11733 + molybdenum cofactor biosynthesis protein C COGs: COG0315 Molybdenum cofactor biosynthesis enzyme~InterPro IPR002820~KEGG: cyc:PCC7424_0979 molybdenum cofactor biosynthesis protein C~PFAM: molybdopterin cofactor biosynthesis protein MoaC~SPTR: GTP cyclohydrolase subunit MoaC%3B~TIGRFAM: molybdenum cofactor biosynthesis protein C~IMG reference gene:2505283291~PFAM: MoaC family~TIGRFAM: molybdenum cofactor biosynthesis protein MoaC gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0010 Thein_0011 Thein_0011 Thein_0011 11745 12107 + transcriptional regulator%2C TraR/DksA family COGs: COG1734 DnaK suppressor protein~InterPro IPR000962:IPR012784:IPR020458~KEGG: geo:Geob_3702 transcriptional regulator%2C TraR/DksA family~SPTR: Transcriptional regulator%2C TraR/DksA family%3B~TIGRFAM: RNA polymerase-binding protein DksA~IMG reference gene:2505283292~PFAM: Prokaryotic dksA/traR C4-type zinc finger~TIGRFAM: RNA polymerase-binding protein DksA gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0011 Thein_0012 Thein_0012 Thein_0012 12107 14233 + glycoside hydrolase family 57 COGs: COG1449 Alpha-amylase/alpha-mannosidase~InterPro IPR004300~KEGG: nde:NIDE3392 glycoside hydrolase family 57 protein~PFAM: glycoside hydrolase family 57~SPTR: Glycoside hydrolase%2C family 57%3B~IMG reference gene:2505283293~PFAM: Glycosyl hydrolase family 57 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0012 Thein_0013 Thein_0013 Thein_0013 14249 15265 + galactose-1-phosphate uridylyltransferase COGs: COG1085 Galactose-1-phosphate uridylyltransferase~InterPro IPR005850:IPR001937~KEGG: dak:DaAHT2_1705 galactose-1-phosphate uridylyltransferase~PFAM: galactose-1-phosphate uridyl transferase domain protein~PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase~SPTR: Galactose-1-phosphate uridylyltransferase%3B~TIGRFAM: galactose-1-phosphate uridylyltransferase~IMG reference gene:2505283294~PFAM: Galactose-1-phosphate uridyl transferase%2C C-terminal domain%3B Galactose-1-phosphate uridyl transferase%2C N-terminal domain~TIGRFAM: galactose-1-phosphate uridylyltransferase%2C family 1 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0013 Thein_0014 Thein_0014 Thein_0014 15265 15639 + response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: dak:DaAHT2_1706 response regulator receiver protein~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505283295~PFAM: Response regulator receiver domain gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0014 Thein_0015 Thein_0015 Thein_0015 15694 16671 - NAD-dependent epimerase/dehydratase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: chy:CHY_1057 hypothetical protein~PFAM: NAD-dependent epimerase/dehydratase~SPTR: Conserved domain protein%3B~IMG reference gene:2505283296~PFAM: NAD dependent epimerase/dehydratase family gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0015 Thein_0016 Thein_0016 Thein_0016 16674 17726 - sigma54 specific transcriptional regulator%2C Fis family COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains~InterPro IPR020441:IPR002078:IPR002197:IPR003593~KEGG: acp:A2cp1_2835 two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B helix-turn-helix Fis-type~SMART: AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505283297~PFAM: Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0016 Thein_0017 Thein_0017 Thein_0017 17798 18658 + inosine guanosine and xanthosine phosphorylase family COGs: COG0005 Purine nucleoside phosphorylase~InterPro IPR000845:IPR011268:IPR011270~KEGG: dak:DaAHT2_0643 purine nucleoside phosphorylase I%2C inosine and guanosine-specific~PFAM: purine or other phosphorylase family 1~SPTR: Purine nucleoside phosphorylase I%2C inosine and guanosine-specific%3B~TIGRFAM: inosine guanosine and xanthosine phosphorylase family%3B purine nucleoside phosphorylase I%2C inosine and guanosine-specific~IMG reference gene:2505283298~PFAM: Phosphorylase superfamily~TIGRFAM: purine nucleoside phosphorylase I%2C inosine and guanosine-specific%3B inosine guanosine and xanthosine phosphorylase family gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0017 Thein_0018 Thein_0018 Thein_0018 18660 20147 + ribonuclease%2C Rne/Rng family COGs: COG1530 Ribonuclease G and E~InterPro IPR003029:IPR019307:IPR004659:IPR018247~KEGG: gsu:GSU3239 ribonuclease G~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B RNA binding S1 domain protein~SPTR: Ribonuclease G%3B~TIGRFAM: ribonuclease%2C Rne/Rng family~IMG reference gene:2505283299~PFAM: Ribonuclease E/G family%3B S1 RNA binding domain~TIGRFAM: ribonuclease%2C Rne/Rng family gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0018 Thein_0019 Thein_0019 Thein_0019 20302 21345 - Methionine synthase vitamin-B12 independent InterPro IPR002629~KEGG: dat:HRM2_37800 hypothetical protein~PFAM: Methionine synthase vitamin-B12 independent~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283300~PFAM: Cobalamin-independent synthase%2C Catalytic domain gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0019 Thein_0020 Thein_0020 Thein_0020 21528 22385 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283301 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0020 Thein_0021 Thein_0021 Thein_0021 22582 23517 + heat shock protein DnaJ domain protein InterPro IPR001623~KEGG: ttr:Tter_1000 heat shock protein DnaJ domain protein~PFAM: heat shock protein DnaJ domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283302~PFAM: DnaJ domain gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0021 Thein_0022 Thein_0022 Thein_0022 23521 24732 - HipA domain protein COGs: COG3550 conserved hypothetical protein~InterPro IPR012894:IPR012893~KEGG: dol:Dole_0896 HipA domain-containing protein~PFAM: HipA domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283303~PFAM: HipA-like N-terminal domain%3B HipA-like C-terminal domain gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0022 Thein_0023 Thein_0023 Thein_0023 24713 25837 - major facilitator superfamily MFS_1 InterPro IPR011701~KEGG: glo:Glov_0894 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: Multidrug resistance protein 1%3B~IMG reference gene:2505283304~PFAM: Major Facilitator Superfamily gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0023 Thein_0024 Thein_0024 Thein_0024 25900 28335 - phosphoenolpyruvate synthase COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase~InterProIPR006318:IPR002192:IPR008279:IPR000121:IPR 006319:IPR018274~KEGG: dak:DaAHT2_0891 phosphoenolpyruvate synthase~PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding%3B PEP-utilising protein mobile region%3B PEP-utilizing protein~SPTR: Phosphoenolpyruvate synthase%3B~TIGRFAM: phosphoenolpyruvate synthase~IMG reference gene:2505283305~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain~TIGRFAM: phosphoenolpyruvate synthase gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0024 Thein_0025 Thein_0025 Thein_0025 28503 28796 + hypothetical protein KEGG: kol:Kole_0506 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283306~PFAM: Uncharacterized protein conserved in archaea (DUF2250) gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0025 Thein_0026 Thein_0026 Thein_0026 28793 29925 - pseudogene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0026 Thein_0027 Thein_0027 Thein_0027 30069 30182 - hypothetical protein IMG reference gene:2505283308 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0027 Thein_0028 Thein_0028 Thein_0028 30249 31367 - 8-amino-7-oxononanoate synthase COGs: COG0156 7-keto-8-aminopelargonate synthetase~InterPro IPR004839:IPR004723:IPR001917~KEGG: cch:Cag_0079 8-amino-7-oxononanoate synthase~PFAM: aminotransferase class I and II~PRIAM: 8-amino-7-oxononanoate synthase~SPTR: 8-amino-7-oxononanoate synthase%3B~TIGRFAM: 8-amino-7-oxononanoate synthase~IMG reference gene:2505283309~PFAM: Aminotransferase class I and II~TIGRFAM: 8-amino-7-oxononanoate synthase gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0028 Thein_0029 Thein_0029 Thein_0029 31367 32746 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase~InterPro IPR005814:IPR005815~KEGG: amu:Amuc_0493 adenosylmethionine-8-amino-7-oxononanoate aminotransferase~PFAM: aminotransferase class-III~SPTR: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase%3B~TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase~IMG reference gene:2505283310~PFAM: Aminotransferase class-III~TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0029 Thein_0030 Thein_0030 Thein_0030 32743 33357 - hypothetical protein KEGG: sdl:Sdel_1843 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283311 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0030 Thein_0031 Thein_0031 Thein_0031 33473 34408 + biotin synthase COGs: COG0502 Biotin synthase~InterPro IPR007197:IPR010722:IPR002684:IPR006638~KEGG: chy:CHY_0889 biotin synthase~PFAM: biotin and thiamin synthesis associated%3B Radical SAM domain protein~PRIAM: Biotin synthase~SMART: Elongator protein 3/MiaB/NifB~SPTR: Biotin synthase%3B~TIGRFAM: biotin synthase~IMG reference gene:2505283312~PFAM: Radical SAM superfamily%3B Biotin and Thiamin Synthesis associated domain~TIGRFAM: biotin synthetase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0031 Thein_0032 Thein_0032 Thein_0032 34440 35204 - protein of unknown function DUF164 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding~InterPro IPR003743~KEGG: dak:DaAHT2_0014 protein of unknown function DUF164~PFAM: protein of unknown function DUF164~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283313~PFAM: Putative zinc ribbon domain gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0032 Thein_0033 Thein_0033 Thein_0033 35220 36338 - protein of unknown function DUF34 COGs: COG0327 conserved hypothetical protein~InterPro IPR002678:IPR017221~KEGG: mta:Moth_0626 hypothetical protein~PFAM: protein of unknown function DUF34~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283314~PFAM: NIF3 (NGG1p interacting factor 3)~TIGRFAM: dinuclear metal center protein%2C YbgI/SA1388 family gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0033 Thein_0034 Thein_0034 Thein_0034 36529 38211 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR000943:IPR009042:IPR007627:IPR007624:IPR 007630:IPR014284:IPR012760~KEGG: hoh:Hoch_6393 RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily~PFAM: sigma-70 region 3 domain protein%3B sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B sigma-70 region 4 domain protein~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor RpoD%3B RNA polymerase sigma factor%2C sigma-70 family~IMG reference gene:2505283316~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family%3B RNA polymerase sigma factor RpoD%2C C-terminal domain gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0034 Thein_0035 Thein_0035 Thein_0035 38234 39931 - DNA primase COGs: COG0358 DNA primase~InterProIPR002694:IPR013264:IPR006171:IPR019475:IPR 006295:IPR006154~KEGG: dak:DaAHT2_2321 DNA primase~PFAM: DNA primase catalytic core domain%3B TOPRIM domain-containing protein%3B DNA primase%2C DnaB-helicase binding domain~SMART: Toprim sub domain-containing protein~SPTR: DNA primase%3B~TIGRFAM: DNA primase~IMG reference gene:2505283317~PFAM: Toprim domain%3B DNA primase catalytic core%2C N-terminal domain%3B CHC2 zinc finger%3B DnaB-helicase binding domain of primase~TIGRFAM: DNA primase%2C catalytic core gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0035 Thein_0036 Thein_0036 Thein_0036 39928 42258 - MutS2 family protein COGs: COG1193 Mismatch repair ATPase (MutS family)~InterPro IPR000432:IPR002625:IPR005747:IPR007696~KEGG: ssp:SSP1651 recombination and DNA strand exchange inhibitor protein~PFAM: Smr protein/MutS2%3B DNA mismatch repair protein MutS domain protein~SMART: DNA mismatch repair protein MutS domain protein%3B MutS III domain protein%3B Smr protein/MutS2~SPTR: MutS2 protein%3B~TIGRFAM: MutS2 family protein~IMG reference gene:2505283318~PFAM: MutS domain V%3B Smr domain~TIGRFAM: MutS2 family protein gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0036 Thein_0037 Thein_0037 Thein_0037 42330 42533 - ribosomal protein S21 InterPro IPR001911:IPR018278~KEGG: ppd:Ppro_3053 30S ribosomal protein S21~PFAM: ribosomal protein S21~SPTR: 30S ribosomal protein S21%3B~TIGRFAM: ribosomal protein S21~IMG reference gene:2505283319~PFAM: Ribosomal protein S21~TIGRFAM: ribosomal protein S21 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0037 Thein_0038 Thein_0038 Thein_0038 42677 43621 - Sua5/YciO/YrdC/YwlC family protein COGs: COG0009 Putative translation factor (SUA5)~InterPro IPR006070:IPR005145:IPR004388:IPR010923~KEGG: mif:Metin_0755 SUA5/YciO/YrdC/YwlC family protein~PFAM: SUA5/yciO/yrdC domain%3B SUA5 domain-containing protein~SPTR: Sua5/YciO/YrdC/YwlC family protein%3B~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein~IMG reference gene:2505283320~PFAM: yrdC domain%3B SUA5 domain~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0038 Thein_0039 Thein_0039 Thein_0039 43895 44305 - thioesterase superfamily protein COGs: COG0824 thioesterase~InterPro IPR006683:IPR006684~KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase~PFAM: thioesterase superfamily protein~SPTR: 4-hydroxybenzoyl-CoA thioesterase%3B~IMG reference gene:2505283321~PFAM: Thioesterase superfamily~TIGRFAM: acyl-CoA thioester hydrolase%2C YbgC/YbaW family%3B tol-pal system-associated acyl-CoA thioesterase gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0039 Thein_0040 Thein_0040 Thein_0040 44353 45723 + sun protein COGs: COG0144 tRNA and rRNA cytosine-C5-methylase~InterPro IPR006027:IPR001678:IPR004573:IPR018314~KEGG: gbm:Gbem_3528 sun protein~PFAM: Fmu (Sun) domain protein%3B NusB/RsmB/TIM44~SPTR: Sun protein%3B~TIGRFAM: sun protein~IMG reference gene:2505283322~PFAM: NOL1/NOP2/sun family%3B NusB family~TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB%3B NOL1/NOP2/sun family putative RNA methylase gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0040 Thein_0041 Thein_0041 Thein_0041 45889 46746 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283323 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0041 Thein_0042 Thein_0042 Thein_0042 46857 47576 + ubiquinone/menaquinone biosynthesis methyltransferase COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR004033~KEGG: dak:DaAHT2_0570 ubiquinone/menaquinone biosynthesis methyltransferase~PFAM: UbiE/COQ5 methyltransferase~SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase%3B~TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase~IMG reference gene:2505283324~PFAM: ubiE/COQ5 methyltransferase family~TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0042 Thein_0043 Thein_0043 Thein_0043 47566 48789 - tyrosine/nicotianamine aminotransferase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR001176:IPR004839:IPR005958:IPR004838~KEGG: aba:Acid345_1458 aminotransferase~PFAM: aminotransferase class I and II~SPTR: Aminotransferase%3B~TIGRFAM: tyrosine/nicotianamine aminotransferase~IMG reference gene:2505283325~PFAM: Aminotransferase class I and II~TIGRFAM: tyrosine aminotransferase%2C eukaryotic%3B tyrosine/nicotianamine aminotransferases gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0043 Thein_0044 Thein_0044 Thein_0044 48966 50243 - nucleoside recognition domain protein COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.~InterPro IPR011642:IPR011415~KEGG: ter:Tery_2909 nucleoside recognition~PFAM: nucleoside recognition domain protein~SPTR: Nucleoside recognition%3B~IMG reference gene:2505283326~PFAM: Nucleoside recognition gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0044 Thein_0045 Thein_0045 Thein_0045 50245 51012 - 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase COGs: COG1691 NCAIR mutase (PurE)-related protein~InterPro IPR000031~KEGG: dal:Dalk_0112 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~SPTR: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase%3B~IMG reference gene:2505283327~PFAM: AIR carboxylase gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0045 Thein_0046 Thein_0046 Thein_0046 51009 51599 - serine protease inhibitor KEGG: pth:PTH_1373 serine protease inhibitor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283328 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0046 Thein_0047 Thein_0047 Thein_0047 51710 52288 + 5-formyltetrahydrofolate cyclo-ligase COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase~InterPro IPR002698~KEGG: cbe:Cbei_0291 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase~SPTR: 5-formyltetrahydrofolate cyclo-ligase%3B~TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase~IMG reference gene:2505283329~PFAM: 5-formyltetrahydrofolate cyclo-ligase family~TIGRFAM: 5%2C10-methenyltetrahydrofolate synthetase gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0047 Thein_0048 Thein_0048 Thein_0048 52271 53287 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR013099:IPR003148:IPR006037~KEGG: gme:Gmet_0063 TrkA family potassium uptake protein~PFAM: TrkA-N domain protein%3B Ion transport 2 domain protein %3B TrkA-C domain protein~SPTR: Potassium uptake protein%2C TrkA family%3B~IMG reference gene:2505283330~PFAM: TrkA-N domain%3B Ion channel%3B TrkA-C domain gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0048 Thein_0049 Thein_0049 Thein_0049 53277 55067 - phosphoglucose isomerase (PGI) COGs: COG0166 Glucose-6-phosphate isomerase~InterPro IPR001672~KEGG: srm:SRM_00085 putative transaldolase phosphoglucose isomerase~PFAM: phosphoglucose isomerase (PGI)~SPTR: Putative Transaldolase Phosphoglucose isomerase%3B~IMG reference gene:2505283331~PFAM: Phosphoglucose isomerase gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0049 Thein_0050 Thein_0050 Thein_0050 55137 55439 + hypothetical protein KEGG: dak:DaAHT2_2418 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283332 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0050 Thein_0051 Thein_0051 Thein_0051 55439 56230 + RimK domain protein ATP-grasp COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)~InterPro IPR013651:IPR011761~KEGG: dak:DaAHT2_2417 RimK domain protein ATP-grasp~PFAM: RimK domain protein ATP-grasp~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283333~PFAM: RimK-like ATP-grasp domain gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0051 Thein_0052 Thein_0052 Thein_0052 56232 56435 - hypothetical protein KEGG: adg:Adeg_0943 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283334 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0052 Thein_0053 Thein_0053 Thein_0053 56423 57277 - protein of unknown function UPF0031 COGs: COG0063 sugar kinase~InterPro IPR000631:IPR017953~KEGG: tye:THEYE_A1504 hypothetical protein~PFAM: protein of unknown function UPF0031~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283335~PFAM: Carbohydrate kinase gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0053 Thein_0054 Thein_0054 Thein_0054 57262 57816 - hypothetical protein KEGG: dol:Dole_3247 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283336~PFAM: Protein of unknown function (DUF3343) gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0054 Thein_0055 Thein_0055 Thein_0055 57825 58037 - SirA-like domain-containing protein InterPro IPR001455~KEGG: tye:THEYE_A1506 hypothetical protein~PFAM: SirA-like domain-containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283337~PFAM: SirA-like protein gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0055 Thein_0056 Thein_0056 Thein_0056 58050 59132 - hypothetical protein InterPro IPR002119~KEGG: sfu:Sfum_3168 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283338~PFAM: YeeE/YedE family (DUF395) gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0056 Thein_0057 Thein_0057 Thein_0057 59258 60214 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: sfu:Sfum_3313 LysR family transcriptional regulator~PFAM: LysR substrate-binding%3B regulatory protein LysR~SPTR: Transcriptional regulator%2C LysR family%3B~IMG reference gene:2505283339~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0057 Thein_0058 Thein_0058 Thein_0058 60219 60797 - protein of unknown function DUF820 COGs: COG4636 conserved hypothetical protein~InterPro IPR008538~KEGG: ddf:DEFDS_1242 hypothetical protein~PFAM: protein of unknown function DUF820~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283340~PFAM: Protein of unknown function (DUF820) gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0058 Thein_0059 Thein_0059 Thein_0059 60825 61364 + putative transcriptional regulator%2C AsnC family COGs: COG1522 Transcriptional regulators~InterPro IPR019888~KEGG: dol:Dole_2996 AsnC family transcriptional regulator~SMART: Transcription regulator AsnC-type~SPTR: Putative transcriptional regulator%2C AsnC family%3B~IMG reference gene:2505283341 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0059 Thein_0060 Thein_0060 Thein_0060 61376 62662 + glutamate-1-semialdehyde-2%2C1-aminomutase COGs: COG0001 Glutamate-1-semialdehyde aminotransferase~InterPro IPR005814:IPR004639~KEGG: mta:Moth_1244 glutamate-1-semialdehyde 2%2C1-aminomutase~PFAM: aminotransferase class-III~SPTR: Glutamate-1-semialdehyde 2%2C1-aminotransferase%3B~TIGRFAM: glutamate-1-semialdehyde-2%2C1-aminomutase~IMG reference gene:2505283342~PFAM: Aminotransferase class-III~TIGRFAM: glutamate-1-semialdehyde-2%2C1-aminomutase gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0060 Thein_0061 Thein_0061 Thein_0061 62679 63626 - hypothetical protein KEGG: avn:Avin_40270 YfgM-like protein~SPTR: Initiator RepB protein%3B~IMG reference gene:2505283343 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0061 Thein_0062 Thein_0062 Thein_0062 63657 64598 - Radical SAM domain protein COGs: COG1533 DNA repair photolyase~InterPro IPR007197:IPR006638~KEGG: aac:Aaci_2479 radical SAM domain protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283344~PFAM: Radical SAM superfamily gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0062 Thein_0063 Thein_0063 Thein_0063 64666 65574 + protein of unknown function DUF81 COGs: COG0730 permease~InterPro IPR002781~KEGG: tye:THEYE_A0940 hypothetical protein~PFAM: protein of unknown function DUF81~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2505283345~PFAM: Sulfite exporter TauE/SafE gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0063 Thein_0064 Thein_0064 Thein_0064 65810 67642 + pyruvate carboxyltransferase COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR000891~KEGG: sfu:Sfum_3301 pyruvate carboxyltransferase~PFAM: pyruvate carboxyltransferase~SPTR: Pyruvate carboxyltransferase%3B~IMG reference gene:2505283346~PFAM: HMGL-like gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0064 Thein_0065 Thein_0065 Thein_0065 67685 69199 - Alkaline phosphatase COGs: COG1785 Alkaline phosphatase~InterPro IPR001952~KEGG: pca:Pcar_0512 alkaline phosphatase~PFAM: Alkaline phosphatase~PRIAM: Alkaline phosphatase~SMART: Alkaline phosphatase~SPTR: Alkaline phosphatase%3B~IMG reference gene:2505283347~PFAM: Alkaline phosphatase gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0065 Thein_0066 Thein_0066 Thein_0066 69221 69868 - protein of unknown function DUF1555 InterPro IPR011449:IPR013424~KEGG: cps:CPS_0379 hypothetical protein~PFAM: protein of unknown function DUF1555~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283348~TIGRFAM: PEP-CTERM putative exosortase interaction domain gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0066 Thein_0067 Thein_0067 Thein_0067 70154 70675 + DnaJ like protein InterPro IPR018961~KEGG: drt:Dret_1391 DnaJ-like%2C subfamily C%2C member 28~PFAM: DnaJ homologue%2C subfamily C%2C member 28%2C conserved domain~SPTR: DnaJ-like%2C subfamily C%2C member 28%3B~IMG reference gene:2505283349~PFAM: Domain of unknown function (DUF1992) gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0067 Thein_0068 Thein_0068 Thein_0068 70771 71865 + DNA polymerase III%2C delta subunit COGs: COG1466 DNA polymerase III delta subunit~InterPro IPR010372:IPR005790~KEGG: gem:GM21_0770 DNA polymerase III%2C delta subunit~PFAM: DNA polymerase III delta~SPTR: DNA polymerase III%2C delta subunit%3B~TIGRFAM: DNA polymerase III%2C delta subunit~IMG reference gene:2505283350~PFAM: DNA polymerase III%2C delta subunit~TIGRFAM: DNA polymerase III%2C delta subunit gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0068 Thein_0069 Thein_0069 Thein_0069 71846 72778 - ParB domain protein nuclease InterPro IPR003115~KEGG: dol:Dole_2368 nuclease~PFAM: ParB domain protein nuclease~SMART: ParB domain protein nuclease~SPTR: ParB domain protein nuclease%3B~IMG reference gene:2505283351~PFAM: ParB-like nuclease domain gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0069 Thein_0070 Thein_0070 Thein_0070 72768 73664 - phosphoribosylaminoimidazole-succinocarboxamide synthase COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase~InterPro IPR001636:IPR018236~KEGG: dol:Dole_2369 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase~PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase~SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase%3B~TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase~IMG reference gene:2505283352~PFAM: SAICAR synthetase~TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0070 Thein_0071 Thein_0071 Thein_0071 73664 73996 - hypothetical protein KEGG: dal:Dalk_0401 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283353~PFAM: Rho termination factor%2C N-terminal domain gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0071 Thein_0072 Thein_0072 Thein_0072 74080 74334 + hypothetical protein KEGG: afm:AFUA_7G05520 hypothetical protein~SPTR: Two component transcriptional regulator%2C AraC family%3B~IMG reference gene:2505283354 gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0072 Thein_0073 Thein_0073 Thein_0073 74375 75097 + MgtC/SapB transporter COGs: COG1285 membrane protein~InterPro IPR003416~KEGG: sfu:Sfum_3054 MgtC/SapB transporter~PFAM: MgtC/SapB transporter~SPTR: MgtC/SapB transporter%3B~IMG reference gene:2505283355~PFAM: MgtC family gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0073 Thein_0074 Thein_0074 Thein_0074 75094 76443 - phosphoglucosamine mutase COGs: COG1109 Phosphomannomutase~InterProIPR005841:IPR005844:IPR005845:IPR005846:IPR 005843:IPR006352:IPR016066~KEGG: gem:GM21_1599 phosphoglucosamine mutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase~SPTR: Phosphoglucosamine mutase%3B~TIGRFAM: phosphoglucosamine mutase~IMG reference gene:2505283356~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I~TIGRFAM: phosphoglucosamine mutase gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0074 Thein_0075 Thein_0075 Thein_0075 76469 77380 - YbbR family protein COGs: COG4856 conserved hypothetical protein~InterPro IPR012505~KEGG: ddf:DEFDS_1032 hypothetical protein~PFAM: YbbR family protein~SPTR: YbbR-like%3B~IMG reference gene:2505283357~PFAM: YbbR-like protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0075 Thein_0076 Thein_0076 Thein_0076 77377 78177 - protein of unknown function DUF147 COGs: COG1624 conserved hypothetical protein~InterPro IPR003390:IPR014046:IPR020053~KEGG: dak:DaAHT2_0445 protein of unknown function DUF147~PFAM: protein of unknown function DUF147~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283358~PFAM: DisA bacterial checkpoint controller nucleotide-binding~TIGRFAM: TIGR00159 family protein gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0076 Thein_0077 Thein_0077 Thein_0077 78174 79016 - dihydropteroate synthase COGs: COG0294 Dihydropteroate synthase~InterPro IPR000489:IPR006390~KEGG: tnp:Tnap_0671 dihydropteroate synthase~PFAM: dihydropteroate synthase DHPS~PRIAM: Dihydropteroate synthase~SPTR: Dihydropteroate synthase%3B~TIGRFAM: dihydropteroate synthase~IMG reference gene:2505283359~PFAM: Pterin binding enzyme~TIGRFAM: dihydropteroate synthase gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0077 Thein_0078 Thein_0078 Thein_0078 79023 80843 - ATP-dependent metalloprotease FtsH COGs: COG0465 ATP-dependent Zn protease~InterProIPR003959:IPR000642:IPR005936:IPR003593:IPR 003960~KEGG: ddf:DEFDS_1029 cell division protein FtsH~PFAM: peptidase M41%3B AAA ATPase central domain protein~PRIAM: Microtubule-severing ATPase~SMART: AAA ATPase~SPTR: Cell division protein FtsH%3B~TIGRFAM: ATP-dependent metalloprotease FtsH~IMG reference gene:2505283360~PFAM: FtsH Extracellular%3B Peptidase family M41%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent metalloprotease FtsH gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0078 Thein_0079 Thein_0079 Thein_0079 81018 81398 + response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: dat:HRM2_25100 response regulator family protein~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Hypothetical histidine kinase protein%3B~IMG reference gene:2505283361~PFAM: Response regulator receiver domain gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0079 Thein_0080 Thein_0080 Thein_0080 81388 81630 + Transcription regulator AsnC-type InterPro IPR019887~KEGG: sma:SAV_2677 hypothetical protein~PFAM: Transcription regulator AsnC-type-like~SPTR: Putative AsnC-family transcriptional regulator%3B~IMG reference gene:2505283362~PFAM: AsnC family gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0080 Thein_0081 Thein_0081 Thein_0081 82175 82357 + hypothetical protein IMG reference gene:2505283363 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0081 Thein_0082 Thein_0082 Thein_0082 82354 83322 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505283364~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0082 Thein_0083 Thein_0083 Thein_0083 83443 84651 - Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase~InterPro IPR007507~KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic-acid transferase domain protein~PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein~SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein%3B~IMG reference gene:2505283365~PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0083 Thein_0084 Thein_0084 Thein_0084 84652 85392 - RNA methyltransferase%2C TrmH family%2C group 3 COGs: COG0566 rRNA methylase~InterPro IPR013123:IPR001537:IPR004441~KEGG: sth:STH3115 rRNA methyltransferase~PFAM: tRNA/rRNA methyltransferase (SpoU)%3B RNA 2-O ribose methyltransferase substrate binding~SPTR: RNA methyltransferase%2C TrmH family%2C group 3%3B~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 3~IMG reference gene:2505283366~PFAM: SpoU rRNA Methylase family%3B RNA 2'-O ribose methyltransferase substrate binding~TIGRFAM: rRNA methylase%2C putative%2C group 3 gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0084 Thein_0085 Thein_0085 Thein_0085 85394 85996 - guanylate kinase COGs: COG0194 Guanylate kinase~InterPro IPR008144:IPR017665:IPR008145:IPR020590~KEGG: dak:DaAHT2_0280 guanylate kinase~PFAM: guanylate kinase~PRIAM: Guanylate kinase~SMART: guanylate kinase/L-type calcium channel region~SPTR: Guanylate kinase%3B~TIGRFAM: guanylate kinase~IMG reference gene:2505283367~PFAM: Guanylate kinase~TIGRFAM: guanylate kinase gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0085 Thein_0086 Thein_0086 Thein_0086 85999 86304 - protein of unknown function DUF370 COGs: COG2052 conserved hypothetical protein~InterPro IPR007169~KEGG: drt:Dret_0295 hypothetical protein~PFAM: protein of unknown function DUF370~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283368~PFAM: Domain of unknown function (DUF370) gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0086 Thein_0087 Thein_0087 Thein_0087 86399 87280 - YicC-like domain-containing protein COGs: COG1561 Uncharacterized stress-induced protein~InterPro IPR013527:IPR013551:IPR005229~KEGG: dps:DP2862 hypothetical protein~PFAM: YicC-like domain-containing protein%3B domain of unknown function DUF1732~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283369~PFAM: YicC-like family%2C N-terminal region%3B Domain of unknown function (DUF1732)~TIGRFAM: TIGR00255 family protein gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0087 Thein_0088 Thein_0088 Thein_0088 87336 87896 + hypothetical protein KEGG: sfu:Sfum_1128 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283370 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0088 Thein_0089 Thein_0089 Thein_0089 87916 88530 + peptidoglycan-associated lipoprotein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006664:IPR006665:IPR014169~KEGG: gme:Gmet_3541 OmpA/MotB~PFAM: OmpA/MotB domain protein~SPTR: OmpA/MotB%3B~TIGRFAM: peptidoglycan-associated lipoprotein~IMG reference gene:2505283371~PFAM: OmpA family~TIGRFAM: peptidoglycan-associated lipoprotein gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0089 Thein_0090 Thein_0090 Thein_0090 88550 89077 + outer membrane chaperone Skp (OmpH) InterPro IPR000293:IPR005632~KEGG: tye:THEYE_A0093 outer membrane protein%2C putative~PFAM: outer membrane chaperone Skp (OmpH)~SPTR: Outer membrane protein%2C putative%3B~IMG reference gene:2505283372~PFAM: Outer membrane protein (OmpH-like) gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0090 Thein_0091 Thein_0091 Thein_0091 89077 90060 + glucokinase COGs: COG0837 Glucokinase~InterPro IPR003836~KEGG: dps:DP1060 glucokinase~PFAM: Glucokinase~PRIAM: Glucokinase~SPTR: Glucokinase%3B~TIGRFAM: glucokinase~IMG reference gene:2505283373~PFAM: Glucokinase~TIGRFAM: glucokinase%2C proteobacterial type gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0091 Thein_0092 Thein_0092 Thein_0092 90044 90382 + hypothetical protein KEGG: vsa:VSAL_II0726 membrane protein~SPTR: Membrane protein%3B~manually curated~IMG reference gene:2505283374 gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0092 Thein_0093 Thein_0093 Thein_0093 90383 91954 + integral membrane protein MviN COGs: COG0728 membrane protein putative virulence factor~InterPro IPR004268~KEGG: dps:DP2399 virulence factor (MviN)~PFAM: virulence factor MVIN family protein~SPTR: Related to virulence factor (MviN)%3B~TIGRFAM: integral membrane protein MviN~IMG reference gene:2505283375~PFAM: MviN-like protein~TIGRFAM: integral membrane protein MviN gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0093 Thein_0094 Thein_0094 Thein_0094 91944 92534 - Indolepyruvate ferredoxin oxidoreductase COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit~InterPro IPR019752~KEGG: dal:Dalk_5038 indolepyruvate ferredoxin oxidoreductase~PFAM: Pyruvate/ketoisovalerate oxidoreductase%2C catalytic domain~PRIAM: Indolepyruvate ferredoxin oxidoreductase~SPTR: Indolepyruvate ferredoxin oxidoreductase%3B~IMG reference gene:2505283376~PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase~TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C beta subunit gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0094 Thein_0095 Thein_0095 Thein_0095 92549 94243 - indolepyruvate ferredoxin oxidoreductase%2C alpha subunit COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits~InterPro IPR002880:IPR011766:IPR017721~KEGG: dat:HRM2_11230 IorA1~PFAM: thiamine pyrophosphate TPP-binding domain-containing protein%3B pyruvate flavodoxin/ferredoxin oxidoreductase domain protein~PRIAM: Indolepyruvate ferredoxin oxidoreductase~SPTR: IorA1%3B~TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C alpha subunit~IMG reference gene:2505283377~PFAM: domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C alpha subunit gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0095 Thein_0096 Thein_0096 Thein_0096 94308 94751 - hypothetical protein KEGG: sfr:Sfri_1790 Fmu (Sun) domain-containing protein~SPTR: Fmu (Sun) domain protein%3B~IMG reference gene:2505283378 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0096 Thein_0097 Thein_0097 Thein_0097 94761 94868 - hypothetical protein KEGG: dak:DaAHT2_2010 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283379 gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0097 Thein_0098 Thein_0098 Thein_0098 94871 95287 - ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481~KEGG: sat:SYN_02524 ferric uptake regulator family protein~PFAM: ferric-uptake regulator~SPTR: Ferric uptake regulator family protein%3B~IMG reference gene:2505283380~PFAM: Ferric uptake regulator family gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0098 Thein_0099 Thein_0099 Thein_0099 95629 96882 + transposase IS116/IS110/IS902 family protein InterPro IPR003346~KEGG: dat:HRM2_46600 transposase for insertion sequences IS116%2C IS110 and IS902 (IS111A/IS1328/IS1533 family protein)~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase (IS111A/IS1328/IS1533 family protein)%3B~IMG reference gene:2505283381~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0099 Thein_0100 Thein_0100 Thein_0100 97208 98707 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterProIPR008611:IPR004090:IPR003660:IPR004089:IPR 000727~KEGG: nca:Noca_3602 chemotaxis sensory transducer~PFAM: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SMART: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SPTR: Chemotaxis sensory transducer%3B~IMG reference gene:2505283382~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0100 Thein_0101 Thein_0101 Thein_0101 98931 100196 + peptidase M16 domain protein COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765:IPR007863:IPR001431~KEGG: sfu:Sfum_1235 processing peptidase~PFAM: peptidase M16 domain protein~SPTR: Processing peptidase%3B~IMG reference gene:2505283383~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0101 Thein_0102 Thein_0102 Thein_0102 100377 101561 - ATPase-like%2C ParA/MinD COGs: COG0489 ATPase involved in chromosome partitioning~InterPro IPR019591:IPR000808~KEGG: dak:DaAHT2_0322 ATPase-like%2C ParA/MinD~PFAM: ATPase-like%2C ParA/MinD~SPTR: ATPase-like%2C ParA/MinD%3B~IMG reference gene:2505283384~PFAM: ParA/MinD ATPase like gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0102 Thein_0103 Thein_0103 Thein_0103 101624 101968 - hypothetical protein COGs: COG1416 conserved hypothetical protein~KEGG: dsa:Desal_3394 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283385~PFAM: DsrE/DsrF-like family gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0103 Thein_0104 Thein_0104 Thein_0104 102045 103049 - protein of unknown function DUF224 cysteine-rich region domain protein COGs: COG0247 Fe-S oxidoreductase~InterPro IPR004017:IPR017896:IPR017900~KEGG: drt:Dret_1037 protein of unknown function DUF224 cysteine-rich region domain protein~PFAM: protein of unknown function DUF224 cysteine-rich region domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283386~PFAM: Cysteine-rich domain gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0104 Thein_0105 Thein_0105 Thein_0105 103036 103608 - metal dependent phosphohydrolase COGs: COG1896 hydrolase of HD superfamily~InterPro IPR006674:IPR003607~KEGG: sfu:Sfum_3021 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal dependent phosphohydrolase%3B~IMG reference gene:2505283387~PFAM: HD domain gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0105 Thein_0106 Thein_0106 Thein_0106 103876 104793 + ADP-ribosylation/Crystallin J1 COGs: COG1397 ADP-ribosylglycohydrolase~InterPro IPR005502~KEGG: mrb:Mrub_0165 ADP-ribosylation/crystallin J1~PFAM: ADP-ribosylation/Crystallin J1~SPTR: ADP-ribosylation/Crystallin J1%3B~IMG reference gene:2505283388~PFAM: ADP-ribosylglycohydrolase~TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0106 Thein_0107 Thein_0107 Thein_0107 104885 108133 - helicase domain protein InterPro IPR006935:IPR001650:IPR014021:IPR014001~KEGG: tgr:Tgr7_3181 helicase domain protein~PFAM: helicase domain protein%3B type III restriction protein res subunit~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: Helicase domain protein%3B~IMG reference gene:2505283389~PFAM: Helicase conserved C-terminal domain%3B SNF2 family N-terminal domain gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0107 Thein_0108 Thein_0108 Thein_0108 108341 109132 + Trans-aconitate 2-methyltransferase COGs: COG4106 Trans-aconitate methyltransferase~InterPro IPR013216~KEGG: mac:MA1801 hypothetical protein~PFAM: Methyltransferase type 11~PRIAM: Trans-aconitate 2-methyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283390~PFAM: Methyltransferase domain gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0108 Thein_0109 Thein_0109 Thein_0109 109438 109989 + hypothetical protein KEGG: mpt:Mpe_A1163 putative iron sulfur binding protein~SPTR: Putative iron sulfur binding protein%3B~IMG reference gene:2505283391 gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0109 Thein_0110 Thein_0110 Thein_0110 110100 111485 + hypothetical protein KEGG: ptm:GSPATT00029150001 hypothetical protein~SPTR: Chromosome undetermined scaffold_109%2C whole genome shotgun sequence%3B~IMG reference gene:2505283392 gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0110 Thein_0111 Thein_0111 Thein_0111 111648 112199 + hypothetical protein KEGG: mpt:Mpe_A1163 putative iron sulfur binding protein~SPTR: Protease Do%3B~IMG reference gene:2505283393 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0111 Thein_0112 Thein_0112 Thein_0112 112310 113719 + hypothetical protein KEGG: ptm:GSPATT00029150001 hypothetical protein~SPTR: Chromosome undetermined scaffold_109%2C whole genome shotgun sequence%3B~IMG reference gene:2505283394 gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0112 Thein_0113 Thein_0113 Thein_0113 113882 114436 + hypothetical protein KEGG: azl:AZL_d04230 hypothetical protein~SPTR: Elongation factor Ts%3B~IMG reference gene:2505283395 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0113 Thein_0114 Thein_0114 Thein_0114 114785 115876 + chorismate synthase COGs: COG0082 Chorismate synthase~InterPro IPR000453:IPR020541~KEGG: dak:DaAHT2_2093 chorismate synthase~PFAM: chorismate synthase~PRIAM: Chorismate synthase~SPTR: Chorismate synthase%3B~TIGRFAM: chorismate synthase~IMG reference gene:2505283396~PFAM: Chorismate synthase~TIGRFAM: chorismate synthase gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0114 Thein_0115 Thein_0115 Thein_0115 115911 116423 + flagellar basal body-associated protein FliL InterPro IPR005503~KEGG: tet:TTHERM_00006050 hypothetical protein~PFAM: flagellar basal body-associated protein FliL~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283397~PFAM: Flagellar basal body-associated protein FliL gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0115 Thein_0116 Thein_0116 Thein_0116 116429 117118 - transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR001808:IPR000595:IPR012318~KEGG: dal:Dalk_2705 transcriptional regulator%2C Crp/Fnr family~PFAM: cyclic nucleotide-binding%3B regulatory protein Crp~SMART: cyclic nucleotide-binding%3B regulatory protein Crp~SPTR: Transcriptional regulator%2C Crp/Fnr family%3B~IMG reference gene:2505283398~PFAM: Bacterial regulatory proteins%2C crp family%3B Cyclic nucleotide-binding domain gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0116 Thein_0117 Thein_0117 Thein_0117 117159 117881 + peptidase M22 glycoprotease COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone~InterPro IPR000905~KEGG: dak:DaAHT2_0975 peptidase M22 glycoprotease~PFAM: peptidase M22 glycoprotease~SPTR: Peptidase M22 glycoprotease%3B~IMG reference gene:2505283399~PFAM: Glycoprotease family~TIGRFAM: universal bacterial protein YeaZ gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0117 Thein_0118 Thein_0118 Thein_0118 117878 118861 + binding-protein-dependent transport systems inner membrane component COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: gme:Gmet_1235 binding-protein dependent transport system inner membrane protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2505283400~PFAM: Binding-protein-dependent transport system inner membrane component gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0118 Thein_0119 Thein_0119 Thein_0119 118862 119686 + binding-protein-dependent transport systems inner membrane component COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: sat:SYN_01342 oligopeptide transport system permease protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Oligopeptide transport system permease protein%3B~IMG reference gene:2505283401~PFAM: Binding-protein-dependent transport system inner membrane component gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0119 Thein_0120 Thein_0120 Thein_0120 119757 120197 + heat shock protein Hsp20 COGs: COG0071 Molecular chaperone (small heat shock protein)~InterPro IPR002068~KEGG: tna:CTN_0305 heat shock protein HSP20~PFAM: heat shock protein Hsp20~SPTR: Putative HspC2 heat shock protein%3B~IMG reference gene:2505283402~PFAM: Hsp20/alpha crystallin family gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0120 Thein_0121 Thein_0121 Thein_0121 120460 121104 + nitrite and sulphite reductase 4Fe-4S region COGs: COG1251 NAD(P)H-nitrite reductase~InterPro IPR005117:IPR006067~KEGG: rci:RCIX2197 sulfite reductase%2C assimilatory~PFAM: nitrite and sulphite reductase 4Fe-4S region%3B nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein~SPTR: Sulfite reductase assimilatory-type%3B~IMG reference gene:2505283404~PFAM: Nitrite and sulphite reductase 4Fe-4S domain%3B Nitrite/Sulfite reductase ferredoxin-like half domain gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0121 Thein_0122 Thein_0122 Thein_0122 121120 122121 - heat shock protein DnaJ domain protein InterPro IPR001623~KEGG: sfu:Sfum_2665 heat shock protein DnaJ domain-containing protein~PFAM: heat shock protein DnaJ domain protein~SPTR: Heat shock protein DnaJ domain protein%3B~IMG reference gene:2505283405~PFAM: DnaJ domain gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0122 Thein_0123 Thein_0123 Thein_0123 122541 122717 - hypothetical protein KEGG: pmo:Pmob_0978 anaerobic ribonucleoside triphosphate reductase~SPTR: Anaerobic ribonucleoside-triphosphate reductase%2C putative%3B~IMG reference gene:2505283406 gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0123 Thein_0124 Thein_0124 Thein_0124 122733 124805 - anaerobic ribonucleoside-triphosphate reductase COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase~InterPro IPR005144:IPR012833~KEGG: ate:Athe_0548 anaerobic ribonucleoside triphosphate reductase~PFAM: ATP-cone domain protein~SPTR: Anaerobic ribonucleoside-triphosphate reductase%3B~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase~IMG reference gene:2505283407~PFAM: ATP cone domain~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0124 Thein_0125 Thein_0125 Thein_0125 125117 126025 - periplasmic solute binding protein COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006129:IPR006128:IPR006127~KEGG: gme:Gmet_0491 periplasmic solute binding protein~PFAM: periplasmic solute binding protein~SPTR: Periplasmic solute binding protein%3B~IMG reference gene:2505283408~PFAM: Periplasmic solute binding protein family gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0125 Thein_0126 Thein_0126 Thein_0126 126070 127362 - CDP-alcohol phosphatidyltransferase COGs: COG1213 sugar nucleotidyltransferase~InterPro IPR005835:IPR000462~KEGG: aae:aq_1367 glucose-1-phosphate thymidylyltransferase~PFAM: CDP-alcohol phosphatidyltransferase%3B Nucleotidyl transferase~SPTR: Glucose-1-phosphate thymidylyltransferase%3B~IMG reference gene:2505283409~PFAM: Nucleotidyl transferase%3B CDP-alcohol phosphatidyltransferase gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0126 Thein_0127 Thein_0127 Thein_0127 127381 128217 + RimK domain protein ATP-grasp COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)~InterPro IPR013651:IPR011761~KEGG: dak:DaAHT2_2245 RimK domain protein ATP-grasp~PFAM: RimK domain protein ATP-grasp~SPTR: RimK domain protein ATP-grasp%3B~IMG reference gene:2505283410~PFAM: RimK-like ATP-grasp domain gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0127 Thein_0128 Thein_0128 Thein_0128 128244 129254 - histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterPro IPR004358:IPR003594:IPR005467~KEGG: dak:DaAHT2_2152 multi-sensor hybrid histidine kinase~PFAM: ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein~SPTR: Sensory box histidine kinase/response regulator%3B~IMG reference gene:2505283411~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0128 Thein_0129 Thein_0129 Thein_0129 129287 130198 - malonyl CoA-acyl carrier protein transacylase COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase~InterPro IPR014043:IPR004410~KEGG: dak:DaAHT2_1176 malonyl CoA-acyl carrier protein transacylase~PFAM: Acyl transferase~SPTR: Malonyl CoA-acyl carrier protein transacylase%3B~TIGRFAM: malonyl CoA-acyl carrier protein transacylase~IMG reference gene:2505283412~PFAM: Acyl transferase domain~TIGRFAM: malonyl CoA-acyl carrier protein transacylase gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0129 Thein_0130 Thein_0130 Thein_0130 130202 130633 - glycine cleavage system H protein COGs: COG0509 Glycine cleavage system H protein (lipoate-binding)~InterPro IPR002930:IPR017453~KEGG: htu:Htur_2055 glycine cleavage system H protein~PFAM: glycine cleavage H-protein~SPTR: Glycine cleavage system H protein%3B~TIGRFAM: glycine cleavage system H protein~IMG reference gene:2505283413~PFAM: Glycine cleavage H-protein~TIGRFAM: glycine cleavage system H protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0130 Thein_0131 Thein_0131 Thein_0131 130712 131683 - molybdenum cofactor biosynthesis protein A COGs: COG2896 Molybdenum cofactor biosynthesis protein~InterProIPR007197:IPR010505:IPR013483:IPR006638:IPR 000385~KEGG: dae:Dtox_2958 molybdenum cofactor biosynthesis protein A~PFAM: molybdenum cofactor synthesis domain protein%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Molybdenum cofactor biosynthesis protein A%3B~TIGRFAM: molybdenum cofactor biosynthesis protein A~IMG reference gene:2505283414~PFAM: Molybdenum Cofactor Synthesis C%3B Radical SAM superfamily~TIGRFAM: molybdenum cofactor biosynthesis protein A%2C bacterial gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0131 Thein_0132 Thein_0132 Thein_0132 131674 132204 - GTP-binding protein KEGG: dal:Dalk_0365 GTP-binding protein~SPTR: GTP-binding protein%3B~IMG reference gene:2505283415 gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0132 Thein_0133 Thein_0133 Thein_0133 132197 132415 - protein of unknown function DUF343 COGs: COG2835 conserved hypothetical protein~InterPro IPR005651~KEGG: sfu:Sfum_3635 hypothetical protein~PFAM: protein of unknown function DUF343~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283416~PFAM: Trm112p-like protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0133 Thein_0134 Thein_0134 Thein_0134 132626 135715 - acriflavin resistance protein COGs: COG0841 Cation/multidrug efflux pump~InterPro IPR001036~KEGG: dae:Dtox_0522 acriflavin resistance protein~PFAM: acriflavin resistance protein~SPTR: Acriflavin resistance protein%3B~IMG reference gene:2505283417~PFAM: AcrB/AcrD/AcrF family gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0134 Thein_0135 Thein_0135 Thein_0135 135726 136040 - Cupin 2 conserved barrel domain protein InterPro IPR010462:IPR013096~KEGG: dal:Dalk_1201 cupin 2 conserved barrel domain protein~PFAM: Cupin 2 conserved barrel domain protein~SPTR: Cupin 2 conserved barrel domain protein%3B~IMG reference gene:2505283418~PFAM: Cupin domain gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0135 Thein_0136 Thein_0136 Thein_0136 136027 137139 - efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: sul:SYO3AOP1_1133 efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~IMG reference gene:2505283419~PFAM: HlyD family secretion protein~TIGRFAM: RND family efflux transporter%2C MFP subunit gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0136 Thein_0137 Thein_0137 Thein_0137 137132 138439 - outer membrane efflux protein COGs: COG1538 Outer membrane protein~InterPro IPR003423~KEGG: gme:Gmet_3465 outer membrane efflux protein~PFAM: outer membrane efflux protein~SPTR: Outer membrane efflux protein%3B~IMG reference gene:2505283420~PFAM: Outer membrane efflux protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0137 Thein_0138 Thein_0138 Thein_0138 138436 139071 - regulatory protein TetR InterPro IPR001647:IPR015292~KEGG: sfu:Sfum_0446 TetR family transcriptional regulator~PFAM: regulatory protein TetR%3B Transcriptional regulator TetR~SPTR: Transcriptional regulator%2C TetR family%3B~IMG reference gene:2505283421~PFAM: Domain of unknown function (DUF1956)%3B Bacterial regulatory proteins%2C tetR family gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0138 Thein_0139 Thein_0139 Thein_0139 139230 139838 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR019734:IPR013026~KEGG: pmx:PERMA_0887 tetratricopeptide repeat domain protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SMART: Tetratricopeptide repeat~SPTR: Tetratricopeptide repeat domain protein%3B~IMG reference gene:2505283422~PFAM: Tetratricopeptide repeat gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0139 Thein_0140 Thein_0140 Thein_0140 139856 140773 - hypothetical protein KEGG: pmx:PERMA_0886 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283423 gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0140 Thein_0141 Thein_0141 Thein_0141 140770 142965 - Peptidase M23 COGs: COG4413 Urea transporter~InterPro IPR016047~KEGG: pmx:PERMA_0885 putative UreA transporter~PFAM: Peptidase M23~SPTR: Putative urea transporter%3B~IMG reference gene:2505283424~PFAM: Urea transporter%3B Peptidase family M23 gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0141 Thein_0142 Thein_0142 Thein_0142 142973 144325 - Orn/DAP/Arg decarboxylase 2 COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR000183~KEGG: pmx:PERMA_0884 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2~SPTR: Diaminopimelate decarboxylase%3B~IMG reference gene:2505283425~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0142 Thein_0143 Thein_0143 Thein_0143 144343 145383 - hypothetical protein COGs: COG3919 ATP-grasp protein~InterPro IPR011761~KEGG: pmx:PERMA_0883 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283426 gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0143 Thein_0144 Thein_0144 Thein_0144 145395 145631 - hypothetical protein KEGG: pmx:PERMA_0882 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283427~PFAM: Coenzyme PQQ synthesis protein D (PqqD) gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0144 Thein_0145 Thein_0145 Thein_0145 145907 147610 + ribosomal protein S1 COGs: COG0539 Ribosomal protein S1~InterPro IPR000110:IPR003029:IPR018032~KEGG: sfu:Sfum_2118 ribosomal protein S1~PFAM: RNA binding S1 domain protein~SPTR: SSU ribosomal protein S1P%3B~TIGRFAM: ribosomal protein S1~IMG reference gene:2505283428~PFAM: S1 RNA binding domain~TIGRFAM: ribosomal protein S1 gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0145 Thein_0146 Thein_0146 Thein_0146 147677 148552 + signal peptide peptidase SppA%2C 36K type COGs: COG0616 Periplasmic serine protease (ClpP class)~InterPro IPR002142:IPR004635~KEGG: tye:THEYE_A1771 signal peptide peptidase SppA%2C 36K type~PFAM: peptidase S49~SPTR: Signal peptide peptidase SppA%2C 36K type%3B~TIGRFAM: signal peptide peptidase SppA%2C 36K type~IMG reference gene:2505283429~PFAM: Peptidase family S49~TIGRFAM: signal peptide peptidase SppA%2C 36K type gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0146 Thein_0147 Thein_0147 Thein_0147 148555 149769 + Ppx/GppA phosphatase COGs: COG0248 Exopolyphosphatase~InterPro IPR000119:IPR003695~KEGG: tye:THEYE_A1046 bifunctional 3-dehydroquinate synthase/phosphatase~PFAM: Ppx/GppA phosphatase%3B histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein~SPTR: Bifunctional 3-dehydroquinate synthase/phosphatase%3B~IMG reference gene:2505283430~PFAM: Bacterial DNA-binding protein%3B Ppx/GppA phosphatase family gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0147 Thein_0148 Thein_0148 Thein_0148 149919 151388 + inosine-5'-monophosphate dehydrogenase COGs: COG0516 IMP dehydrogenase/GMP reductase~InterProIPR001093:IPR000644:IPR005990:IPR018529:IPR 015875~KEGG: dak:DaAHT2_1543 inosine-5'-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B CBS domain containing protein~PRIAM: IMP dehydrogenase~SMART: CBS domain containing protein~SPTR: Inosine-5'-monophosphate dehydrogenase%3B~TIGRFAM: inosine-5'-monophosphate dehydrogenase~IMG reference gene:2505283431~PFAM: CBS domain%3B IMP dehydrogenase / GMP reductase domain~TIGRFAM: inosine-5'-monophosphate dehydrogenase gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0148 Thein_0149 Thein_0149 Thein_0149 151452 152660 + Type II secretion system F domain protein COGs: COG1459 Type II secretory pathway component PulF~InterPro IPR003004:IPR018076~KEGG: pca:Pcar_2147 putative general protein secretion protein~PFAM: Type II secretion system F domain~SPTR: Putative general protein secretion protein%3B~IMG reference gene:2505283432~PFAM: Bacterial type II secretion system protein F domain gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0149 Thein_0150 Thein_0150 Thein_0150 152613 153320 - protein of unknown function DUF434 COGs: COG2454 conserved hypothetical protein~InterPro IPR007368~KEGG: mfe:Mefer_0862 protein of unknown function DUF434~PFAM: protein of unknown function DUF434~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283433~PFAM: Protein of unknown function (DUF434) gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0150 Thein_0151 Thein_0151 Thein_0151 153301 154275 - chaperone DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR003095:IPR001623:IPR002939:IPR018253~KEGG: dak:DaAHT2_1329 chaperone DnaJ domain protein~PFAM: chaperone DnaJ domain protein%3B heat shock protein DnaJ domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: Chaperone DnaJ domain protein%3B~IMG reference gene:2505283434~PFAM: DnaJ C terminal region%3B DnaJ domain gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0151 Thein_0152 Thein_0152 Thein_0152 154866 156086 - Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase~InterPro IPR007507~KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic-acid transferase domain protein~PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein~SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein%3B~IMG reference gene:2505283435~PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0152 Thein_0153 Thein_0153 Thein_0153 156132 158039 + acetate/CoA ligase COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase~InterPro IPR000873:IPR011904:IPR020845~KEGG: cts:Ctha_2157 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase and ligase~SPTR: AMP-dependent synthetase and ligase%3B~TIGRFAM: acetate/CoA ligase~IMG reference gene:2505283436~PFAM: Domain of unknown function (DUF3448)%3B AMP-binding enzyme~TIGRFAM: acetate--CoA ligase gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0153 Thein_0154 Thein_0154 Thein_0154 158246 159553 + Phenylacetate--CoA ligase COGs: COG1541 Coenzyme F390 synthetase~InterPro IPR000873~KEGG: wsu:WS0712 coenzyme F390 synthetase II~PFAM: AMP-dependent synthetase and ligase~PRIAM: Phenylacetate--CoA ligase~SPTR: COENZYME F390 SYNTHETASE II%3B~IMG reference gene:2505283437~PFAM: AMP-binding enzyme gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0154 Thein_0155 Thein_0155 Thein_0155 159566 160012 + amino acid-binding ACT domain protein COGs: COG4747 ACT domain-containing protein~InterPro IPR002912~KEGG: slp:Slip_0779 amino acid-binding ACT domain protein~PFAM: amino acid-binding ACT domain protein~SPTR: Amino acid-binding ACT domain protein%3B~IMG reference gene:2505283438~PFAM: ACT domain gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0155 Thein_0156 Thein_0156 Thein_0156 160039 162120 - DNA ligase%2C NAD-dependent COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)~InterProIPR013839:IPR004150:IPR004149:IPR000445:IPR 001357:IPR001679:IPR013840:IPR003583:IPR018239~KEGG: sfu:Sfum_1428 DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase adenylation%3B NAD-dependent DNA ligase OB-fold%3B helix-hairpin-helix motif%3B BRCT domain protein~PRIAM: DNA ligase (NAD(+))~SMART: NAD-dependent DNA ligase %3B Helix-hairpin-helix DNA-binding class 1%3B BRCT domain protein~SPTR: DNA ligase%3B~TIGRFAM: DNA ligase%2C NAD-dependent~IMG reference gene:2505283439~PFAM: NAD-dependent DNA ligase OB-fold domain%3B NAD-dependent DNA ligase adenylation domain%3B NAD-dependent DNA ligase C4 zinc finger domain%3B Helix-hairpin-helix motif%3B BRCA1 C Terminus (BRCT) domain~TIGRFAM: DNA ligase%2C NAD-dependent gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0156 Thein_0157 Thein_0157 Thein_0157 162130 163227 - aminodeoxychorismate lyase COGs: COG1559 periplasmic solute-binding protein~InterPro IPR003770~KEGG: dat:HRM2_33010 putative aminodeoxychorismate lyase~PFAM: aminodeoxychorismate lyase~SPTR: Aminodeoxychorismate lyase%3B~IMG reference gene:2505283440~PFAM: YceG-like family~TIGRFAM: conserved hypothetical protein%2C YceG family gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0157 Thein_0158 Thein_0158 Thein_0158 163306 163926 + Tetratricopeptide repeat protein COGs: COG3063 Tfp pilus assembly protein PilF~InterPro IPR019734:IPR013026~KEGG: dak:DaAHT2_1672 TPR repeat-containing protein~SMART: Tetratricopeptide repeat~SPTR: TPR repeat:Tetratricopeptide TPR_4%3B~IMG reference gene:2505283441~PFAM: Tetratricopeptide repeat gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0158 Thein_0159 Thein_0159 Thein_0159 163913 164992 + heat repeat-containing PBS lyase KEGG: dak:DaAHT2_1673 heat repeat-containing PBS lyase~SPTR: Heat repeat-containing PBS lyase%3B~IMG reference gene:2505283442 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0159 Thein_0160 Thein_0160 Thein_0160 164996 165646 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR013026:IPR019734~KEGG: nve:NEMVE_v1g201578 hypothetical protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SPTR: Predicted protein%3B~IMG reference gene:2505283443 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0160 Thein_0161 Thein_0161 Thein_0161 165605 166183 - hypothetical protein KEGG: dds:Ddes_0888 protein of unknown function UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283444~PFAM: Uncharacterised protein family (UPF0153) gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0161 Thein_0162 Thein_0162 Thein_0162 166199 166441 - regulatory protein%2C FmdB family InterPro IPR013429~KEGG: dal:Dalk_1639 regulatory protein%2C FmdB family~PFAM: Putative regulatory protein FmdB~SPTR: Regulatory protein%2C FmdB family%3B~TIGRFAM: regulatory protein%2C FmdB family~IMG reference gene:2505283445~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0162 Thein_0163 Thein_0163 Thein_0163 166586 167449 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283446 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0163 Thein_0164 Thein_0164 Thein_0164 167819 169405 - hypothetical protein KEGG: pca:Pcar_3121 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283447 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0164 Thein_0165 Thein_0165 Thein_0165 169728 170030 + regulatory protein MerR InterPro IPR000551~KEGG: ttr:Tter_2295 transcriptional regulator%2C MerR family~PFAM: regulatory protein MerR~SMART: regulatory protein MerR~SPTR: Transcriptional regulator%2C MerR family%3B~IMG reference gene:2505283448~PFAM: MerR family regulatory protein gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0165 Thein_0166 Thein_0166 Thein_0166 170045 172243 + DNA internalization-related competence protein ComEC/Rec2 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily)~InterPro IPR004477:IPR004797~KEGG: nwa:Nwat_0444 DNA internalization-like competence protein ComEC/Rec2~PFAM: ComEC/Rec2-related protein~SPTR: DNA internalization-related competence protein ComEC/Rec2%3B~TIGRFAM: DNA internalization-related competence protein ComEC/Rec2%3B ComEC/Rec2-related protein~IMG reference gene:2505283449~PFAM: Competence protein%3B Metallo-beta-lactamase superfamily~TIGRFAM: ComEC/Rec2-related protein%3B DNA internalization-related competence protein ComEC/Rec2 gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0166 Thein_0167 Thein_0167 Thein_0167 172240 172659 + protein of unknown function DUF101 COGs: COG1371 conserved hypothetical protein~InterPro IPR002804~KEGG: drt:Dret_0332 protein of unknown function DUF101~PFAM: protein of unknown function DUF101~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283450~PFAM: Archease protein family (DUF101/UPF0211) gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0167 Thein_0168 Thein_0168 Thein_0168 172662 174221 + iron-sulfur cluster binding protein COGs: COG3894 Uncharacterized metal-binding protein~KEGG: dol:Dole_1485 iron-sulfur cluster binding protein~SPTR: Iron-sulfur cluster binding protein%3B~IMG reference gene:2505283451 gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0168 Thein_0169 Thein_0169 Thein_0169 174314 176902 + protein-export membrane protein SecD COGs: COG0342 Preprotein translocase subunit SecD~InterPro IPR003335:IPR005791:IPR005665~KEGG: dak:DaAHT2_0637 protein-export membrane protein SecD~PFAM: SecD/SecF/SecDF export membrane protein~SPTR: Protein-export membrane protein SecD%3B~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family%3B protein-export membrane protein SecF~IMG reference gene:2505283452~PFAM: Protein export membrane protein%3B SecD/SecF GG Motif~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family%3B protein-export membrane protein SecF gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0169 Thein_0170 Thein_0170 Thein_0170 176929 179346 - ATP-dependent protease%2C putative COGs: COG1067 ATP-dependent protease~InterPro IPR001984~KEGG: sfu:Sfum_0020 ATP-dependent protease%2C putative~SPTR: ATP-dependent protease%2C putative%3B~IMG reference gene:2505283453~PFAM: Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: lon-related putative ATP-dependent protease gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0170 Thein_0171 Thein_0171 Thein_0171 179506 180357 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283454 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0171 Thein_0172 Thein_0172 Thein_0172 180362 180832 - putative transcriptional regulator%2C AsnC family COGs: COG1522 Transcriptional regulators~InterPro IPR019888~KEGG: dba:Dbac_2394 putative transcriptional regulator%2C AsnC family~SMART: Transcription regulator AsnC-type~SPTR: Putative transcriptional regulator%2C AsnC family%3B~IMG reference gene:2505283455 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0172 Thein_0173 Thein_0173 Thein_0173 180825 181295 - transcription elongation factor GreA COGs: COG0782 Transcription elongation factor~InterPro IPR001437:IPR006359:IPR018151~KEGG: hne:HNE_0643 transcription elongation factor GreA~PFAM: transcription elongation factor GreA/GreB domain-containing protein~SPTR: Transcription elongation factor greA%3B~TIGRFAM: transcription elongation factor GreA~IMG reference gene:2505283456~PFAM: domain%3B Transcription elongation factor%2C GreA/GreB%2C C-term~TIGRFAM: transcription elongation factor GreA gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0173 Thein_0174 Thein_0174 Thein_0174 181552 182403 - 4-hydroxybenzoate polyprenyltransferase COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase~InterPro IPR000537:IPR006371~KEGG: drm:Dred_2196 4-hydroxybenzoate polyprenyltransferase%2C putative~PFAM: UbiA prenyltransferase~SPTR: 4-hydroxybenzoate polyprenyltransferase related%3B~TIGRFAM: 4-hydroxybenzoate polyprenyltransferase~IMG reference gene:2505283457~PFAM: UbiA prenyltransferase family~TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0174 Thein_0175 Thein_0175 Thein_0175 182403 182966 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase~InterPro IPR003382:IPR004507~KEGG: dak:DaAHT2_0571 3-octaprenyl-4-hydroxybenzoate carboxy-lyase~PFAM: flavoprotein~SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase%3B~TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase~IMG reference gene:2505283458~PFAM: Flavoprotein~TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0175 Thein_0176 Thein_0176 Thein_0176 183020 184159 - deoxyribose-phosphate aldolase COGs: COG0274 Deoxyribose-phosphate aldolase~InterPro IPR002915:IPR002156:IPR011343~KEGG: nhl:Nhal_3457 ribonuclease H~PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase%3B ribonuclease H~PRIAM: Deoxyribose-phosphate aldolase.%2C Ribonuclease H~SPTR: Ribonuclease H%3B~TIGRFAM: deoxyribose-phosphate aldolase~manually curated~IMG reference gene:2505283459~PFAM: RNase H%3B DeoC/LacD family aldolase~TIGRFAM: deoxyribose-phosphate aldolase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0176 Thein_0177 Thein_0177 Thein_0177 184158 184799 + siroheme synthase COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)~InterPro IPR006367~KEGG: tjr:TherJR_1133 siroheme synthase~SPTR: Siroheme synthase%3B~TIGRFAM: siroheme synthase~IMG reference gene:2505283460~TIGRFAM: siroheme synthase%2C N-terminal domain gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0177 Thein_0178 Thein_0178 Thein_0178 184796 185311 + methylated-DNA/protein-cysteinemethyltransferase COGs: COG0350 Methylated DNA-protein cysteine methyltransferase~InterPro IPR014048~KEGG: cjr:CJE0923 methylated-DNA--protein-cysteine S-methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding~SPTR: Methylated-DNA--protein-cysteine S-methyltransferase%3B~TIGRFAM: methylated-DNA/protein-cysteine methyltransferase~IMG reference gene:2505283461~PFAM: 6-O-methylguanine DNA methyltransferase%2C DNA binding domain~TIGRFAM: O-6-methylguanine DNA methyltransferase gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0178 Thein_0179 Thein_0179 Thein_0179 185419 185904 + flagellar basal body-associated protein FliL COGs: COG1580 Flagellar basal body-associated protein~InterPro IPR005503~KEGG: ddf:DEFDS_1717 flagellar FliL protein~PFAM: flagellar basal body-associated protein FliL~SPTR: Flagellar FliL protein%3B~IMG reference gene:2505283462~PFAM: Flagellar basal body-associated protein FliL gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0179 Thein_0180 Thein_0180 Thein_0180 185907 186884 + flagellar motor switch protein FliM COGs: COG1868 Flagellar motor switch protein~InterPro IPR001689:IPR001543~KEGG: sat:SYN_02837 flagellar motor switch protein~PFAM: flagellar motor switch protein FliM%3B surface presentation of antigens (SPOA) protein~SPTR: Flagellar motor switch protein%3B~TIGRFAM: flagellar motor switch protein FliM~IMG reference gene:2505283463~PFAM: Surface presentation of antigens (SPOA)%3B Flagellar motor switch protein FliM~TIGRFAM: flagellar motor switch protein FliM gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0180 Thein_0181 Thein_0181 Thein_0181 186888 187466 + flagellar motor switch protein FliN COGs: COG1886 Flagellar motor switch/type III secretory pathway protein~InterPro IPR001172:IPR001543:IPR012826~KEGG: dds:Ddes_0375 flagellar motor switch protein FliN~PFAM: surface presentation of antigens (SPOA) protein~SPTR: Flagellar motor switch protein FliN%3B~TIGRFAM: flagellar motor switch protein FliN~IMG reference gene:2505283464~PFAM: Surface presentation of antigens (SPOA)~TIGRFAM: flagellar motor switch protein FliN gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0181 Thein_0182 Thein_0182 Thein_0182 187463 187732 + flagellar biosynthetic protein FliO KEGG: dak:DaAHT2_1717 flagellar biosynthetic protein FliO~SPTR: Flagellar biosynthetic protein FliO%3B~IMG reference gene:2505283465~PFAM: Flagellar biosynthesis protein%2C FliO gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0182 Thein_0183 Thein_0183 Thein_0183 187713 188456 + flagellar biosynthetic protein FliP COGs: COG1338 Flagellar biosynthesis pathway component FliP~InterPro IPR005838:IPR005837~KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP~PFAM: type III secretion system inner membrane P protein~SPTR: Flagellar transport protein FliP%3B~TIGRFAM: flagellar biosynthetic protein FliP~manually curated~IMG reference gene:2505283466~PFAM: FliP family~TIGRFAM: flagellar biosynthetic protein FliP gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0183 Thein_0184 Thein_0184 Thein_0184 188466 188735 + flagellar biosynthetic protein FliQ COGs: COG1987 Flagellar biosynthesis pathway component FliQ~InterPro IPR002191:IPR006305~KEGG: dba:Dbac_2730 flagellar biosynthetic protein FliQ~PFAM: export protein FliQ family 3~SPTR: Flagellar biosynthetic protein FliQ%3B~TIGRFAM: flagellar biosynthetic protein FliQ~IMG reference gene:2505283467~PFAM: Bacterial export proteins%2C family 3~TIGRFAM: flagellar biosynthetic protein FliQ gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0184 Thein_0185 Thein_0185 Thein_0185 188732 189520 + flagellar biosynthetic protein FliR COGs: COG1684 Flagellar biosynthesis pathway component FliR~InterPro IPR002010:IPR006303~KEGG: dal:Dalk_1005 flagellar biosynthetic protein FliR~PFAM: type III secretion system inner membrane R protein~SPTR: Flagellar biosynthetic protein fliR%3B~TIGRFAM: flagellar biosynthetic protein FliR~IMG reference gene:2505283468~PFAM: Bacterial export proteins%2C family 1~TIGRFAM: flagellar biosynthetic protein FliR gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0185 Thein_0186 Thein_0186 Thein_0186 189523 190587 + flagellar biosynthetic protein FlhB COGs: COG1377 Flagellar biosynthesis pathway component FlhB~InterPro IPR006135:IPR006136~KEGG: sat:SYN_02832 flagellar biosynthesis pathway component~PFAM: type III secretion exporter~SPTR: Flagellar biosynthesis pathway component%3B~TIGRFAM: flagellar biosynthetic protein FlhB~IMG reference gene:2505283469~PFAM: FlhB HrpN YscU SpaS Family~TIGRFAM: flagellar biosynthetic protein FlhB gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0186 Thein_0187 Thein_0187 Thein_0187 190587 192668 + flagellar biosynthesis protein FlhA COGs: COG1298 Flagellar biosynthesis pathway component FlhA~InterPro IPR001712:IPR006301~KEGG: dak:DaAHT2_1722 flagellar biosynthesis protein FlhA~PFAM: type III secretion FHIPEP protein~SPTR: Flagellar biosynthesis protein FlhA%3B~TIGRFAM: flagellar biosynthesis protein FlhA~IMG reference gene:2505283470~PFAM: FHIPEP family~TIGRFAM: flagellar biosynthesis protein FlhA gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0187 Thein_0188 Thein_0188 Thein_0188 192668 193678 + GTP-binding signal recognition particle SRP54 G- domain protein COGs: COG1419 Flagellar GTP-binding protein~InterPro IPR000897:IPR003593~KEGG: dat:HRM2_37110 FlhF~PFAM: GTP-binding signal recognition particle SRP54 G- domain~SMART: AAA ATPase~SPTR: FlhF%3B~IMG reference gene:2505283471~PFAM: SRP54-type protein%2C GTPase domain gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0188 Thein_0189 Thein_0189 Thein_0189 193665 194498 + cobyrinic acid ac-diamide synthase COGs: COG0455 ATPase involved in chromosome partitioning~KEGG: dak:DaAHT2_1724 cobyrinic acid ac-diamide synthase~SPTR: Cobyrinic acid a%2Cc-diamide synthase%3B~IMG reference gene:2505283472~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0189 Thein_0190 Thein_0190 Thein_0190 194495 195298 + RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit~InterProIPR000943:IPR007627:IPR007624:IPR007630:IPR 014284:IPR012845~KEGG: dak:DaAHT2_1725 RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG subfamily~PFAM: sigma-70 region 4 domain protein%3B sigma-70 region 2 domain protein%3B sigma-70 region 3 domain protein~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG family%3B RNA polymerase sigma factor%2C sigma-70 family~IMG reference gene:2505283473~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG family%3B RNA polymerase sigma factor%2C sigma-70 family gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0190 Thein_0191 Thein_0191 Thein_0191 195357 195734 + response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: dsa:Desal_2598 response regulator receiver protein~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505283474~PFAM: Response regulator receiver domain gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0191 Thein_0192 Thein_0192 Thein_0192 195734 196558 + flagellar basal body-associated protein FliL InterPro IPR005503~KEGG: mmu:100043717 predicted gene 4603~PFAM: flagellar basal body-associated protein FliL~SPTR: Glutamic acid-rich protein (Garp)%3B~IMG reference gene:2505283475~PFAM: Flagellar basal body-associated protein FliL gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0192 Thein_0193 Thein_0193 Thein_0193 196562 196741 + hypothetical protein KEGG: bcy:Bcer98_0702 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283476 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0193 Thein_0194 Thein_0194 Thein_0194 196744 197130 + hypothetical protein KEGG: ddf:DEFDS_0434 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283477 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0194 Thein_0195 Thein_0195 Thein_0195 197133 197945 + hypothetical protein KEGG: mpe:MYPE1090 transcription elongation factor NusA~SPTR: N-utilization substance protein A%3B~IMG reference gene:2505283478 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0195 Thein_0196 Thein_0196 Thein_0196 197938 198369 + HEPN domain protein InterPro IPR007842~KEGG: ttj:TTHA0633 hypothetical protein~PFAM: HEPN domain protein~SPTR: Hypothetical conserved protein%3B~IMG reference gene:2505283479~PFAM: HEPN domain gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0196 Thein_0197 Thein_0197 Thein_0197 198389 198835 - transcriptional regulator%2C BadM/Rrf2 family COGs: COG1959 transcriptional regulator protein~InterPro IPR000944~KEGG: dma:DMR_16370 putative Rrf2 family DNA binding protein~PFAM: protein of unknown function UPF0074~SPTR: Putative Rrf2 family DNA binding protein%3B~TIGRFAM: transcriptional regulator%2C Rrf2 family~IMG reference gene:2505283480~PFAM: Transcriptional regulator~TIGRFAM: Rrf2 family protein gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0197 Thein_0198 Thein_0198 Thein_0198 199247 200602 + histidine kinase COGs: COG2205 Osmosensitive K+ channel histidine kinase~InterPro IPR004358:IPR003594:IPR005467~KEGG: dma:DMR_12550 putative sensor histidine kinase~PFAM: ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein~SPTR: Histidine kinase%3B~IMG reference gene:2505283481~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0198 Thein_0199 Thein_0199 Thein_0199 200780 201256 + peptidylprolyl isomerase FKBP-type COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2~InterPro IPR001179~KEGG: pmy:Pmen_0955 peptidylprolyl isomerase%2C FKBP-type~PFAM: peptidylprolyl isomerase FKBP-type~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2505283482~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0199 Thein_0200 Thein_0200 Thein_0200 201253 202479 + proposed homoserine kinase COGs: COG3635 phosphoglycerate mutase AP superfamily~InterPro IPR019304:IPR006124:IPR013371:IPR004456~KEGG: tye:THEYE_A1682 proposed homoserine kinase~PFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%3B metalloenzyme domain protein~PRIAM: Phosphoglycerate mutase~SPTR: Proposed homoserine kinase%3B~TIGRFAM: proposed homoserine kinase%3B phosphonopyruvate decarboxylase-related protein~IMG reference gene:2505283483~PFAM: Metalloenzyme superfamily%3B 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase~TIGRFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%2C archaeal form%3B proposed homoserine kinase gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0200 Thein_0201 Thein_0201 Thein_0201 202479 204107 + L-aspartate oxidase COGs: COG0029 Aspartate oxidase~InterPro IPR013027:IPR003953:IPR004112:IPR005288~KEGG: dak:DaAHT2_2040 L-aspartate oxidase~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein~SPTR: L-aspartate oxidase%3B~TIGRFAM: L-aspartate oxidase~IMG reference gene:2505283484~PFAM: domain%3B FAD binding domain~TIGRFAM: L-aspartate oxidase gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0201 Thein_0202 Thein_0202 Thein_0202 204448 205815 + ammonium transporter COGs: COG0004 Ammonia permease~InterPro IPR001905:IPR018047~KEGG: slp:Slip_2119 ammonium transporter~PFAM: ammonium transporter~SPTR: Ammonium transporter%3B~TIGRFAM: ammonium transporter~IMG reference gene:2505283485~PFAM: Ammonium Transporter Family~TIGRFAM: ammonium transporter gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0202 Thein_0203 Thein_0203 Thein_0203 205821 206159 + nitrogen regulatory protein P-II COGs: COG0347 Nitrogen regulatory protein PII~InterPro IPR002187:IPR017918~KEGG: dth:DICTH_0174 nitrogen regulatory protein P-II~PFAM: nitrogen regulatory protein P-II~SPTR: Nitrogen regulatory protein P-II%3B~IMG reference gene:2505283486~PFAM: Nitrogen regulatory protein P-II gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0203 Thein_0204 Thein_0204 Thein_0204 206626 207006 - hypothetical protein InterPro IPR012902~KEGG: drt:Dret_2133 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283487~PFAM: Prokaryotic N-terminal methylation motif~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0204 Thein_0205 Thein_0205 Thein_0205 207242 207619 - hypothetical protein COGs: COG4968 Tfp pilus assembly protein PilE~InterPro IPR012902:IPR001120~KEGG: drt:Dret_2133 hypothetical protein~SPTR: General secretion pathway protein H%3B~IMG reference gene:2505283488~PFAM: Prokaryotic N-terminal methylation motif~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0205 Thein_0206 Thein_0206 Thein_0206 208674 210353 + GTP-binding proten HflX COGs: COG2262 GTPase~InterProIPR006073:IPR002917:IPR016496:IPR005225:IPR 004827~KEGG: sat:SYN_01762 GTPase~PFAM: GTP-binding protein HSR1-related~SPTR: GTPase%3B~TIGRFAM: GTP-binding proten HflX%3B small GTP-binding protein~IMG reference gene:2505283489~PFAM: GTPase of unknown function~TIGRFAM: GTP-binding protein HflX%3B small GTP-binding protein domain gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0206 Thein_0207 Thein_0207 Thein_0207 210490 211419 - tRNA pseudouridine synthase B COGs: COG0130 Pseudouridine synthase~InterPro IPR002501:IPR014780~KEGG: dal:Dalk_4741 tRNA pseudouridine synthase B~PFAM: pseudouridylate synthase TruB domain protein~SPTR: tRNA pseudouridine synthase B%3B~TIGRFAM: tRNA pseudouridine synthase B~IMG reference gene:2505283490~PFAM: TruB family pseudouridylate synthase (N terminal domain)~TIGRFAM: tRNA pseudouridine 55 synthase gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0207 Thein_0208 Thein_0208 Thein_0208 211416 212375 - phosphoesterase RecJ domain protein COGs: COG0618 Exopolyphosphatase-related protein~InterPro IPR001667:IPR003156~KEGG: dak:DaAHT2_1878 phosphoesterase RecJ domain protein~PFAM: phosphoesterase RecJ domain protein%3B phosphoesterase DHHA1~SPTR: Phosphoesterase RecJ domain protein%3B~IMG reference gene:2505283491~PFAM: DHH family%3B DHHA1 domain gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0208 Thein_0209 Thein_0209 Thein_0209 212368 212715 - ribosome-binding factor A COGs: COG0858 Ribosome-binding factor A~InterPro IPR000238~KEGG: tjr:TherJR_1378 ribosome-binding factor A~PFAM: ribosome-binding factor A~SPTR: Ribosome-binding factor A%3B~TIGRFAM: ribosome-binding factor A~IMG reference gene:2505283492~PFAM: Ribosome-binding factor A~TIGRFAM: ribosome-binding factor A gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0209 Thein_0210 Thein_0210 Thein_0210 212718 213008 - protein of unknown function DUF503 COGs: COG1550 conserved hypothetical protein~InterPro IPR007546~KEGG: tjr:TherJR_2356 protein of unknown function DUF503~PFAM: protein of unknown function DUF503~SPTR: Hypothetical cytosolic protein%3B~IMG reference gene:2505283493~PFAM: Protein of unknown function (DUF503) gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0210 Thein_0211 Thein_0211 Thein_0211 213015 215759 - translation initiation factor IF-2 COGs: COG0532 Translation initiation factor 2 (IF-2%3B GTPase)~InterProIPR006847:IPR000795:IPR004161:IPR000178:IPR 005225~KEGG: gme:Gmet_1586 translation initiation factor IF-2~PFAM: protein synthesis factor GTP-binding%3B translation initiation factor IF-2 domain-containing protein%3B elongation factor Tu domain 2 protein~SPTR: Translation initiation factor IF-2%3B~TIGRFAM: translation initiation factor IF-2%3B small GTP-binding protein~IMG reference gene:2505283494~PFAM: Elongation factor Tu domain 2%3B Translation-initiation factor 2%3B Translation initiation factor IF-2%2C N-terminal region%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation initiation factor IF-2 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0211 Thein_0212 Thein_0212 Thein_0212 215752 216057 - protein of unknown function DUF448 COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination~InterPro IPR007393~KEGG: cag:Cagg_3682 protein of unknown function DUF448~PFAM: protein of unknown function DUF448~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283495~PFAM: Protein of unknown function (DUF448) gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0212 Thein_0213 Thein_0213 Thein_0213 216060 217346 - NusA antitermination factor COGs: COG0195 Transcription elongation factor~InterProIPR013735:IPR003029:IPR018111:IPR004088:IPR 010213:IPR004087~KEGG: dak:DaAHT2_1881 transcription termination factor NusA~PFAM: NusA domain-containing protein%3B RNA binding S1 domain protein%3B K Homology%2C type 1%2C subgroup~SPTR: Transcription termination factor NusA%3B~TIGRFAM: transcription termination factor NusA~IMG reference gene:2505283496~PFAM: NusA N-terminal domain%3B S1 RNA binding domain~TIGRFAM: transcription termination factor NusA gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0213 Thein_0214 Thein_0214 Thein_0214 217360 217827 - protein of unknown function DUF150 InterPro IPR003728:IPR020790~KEGG: sfu:Sfum_1226 hypothetical protein~PFAM: protein of unknown function DUF150~SPTR: Ribosome maturation factor rimP%3B~IMG reference gene:2505283497~PFAM: Uncharacterised BCR%2C YhbC family COG0779 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0214 Thein_0215 Thein_0215 Thein_0215 218148 219005 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283499 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0215 Thein_0216 Thein_0216 Thein_0216 219155 219973 + CRISPR-associated protein Cas6 COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR002743:IPR010156~KEGG: rxy:Rxyl_0271 CRISPR-associated Cas6 family protein~PFAM: protein of unknown function DUF57~SPTR: CRISPR-associated protein%2C Cas6 family%3B~TIGRFAM: CRISPR-associated protein Cas6~IMG reference gene:2505283500~PFAM: CRISPR associated protein Cas6~TIGRFAM: CRISPR-associated endoribonuclease Cas6 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0216 Thein_0217 Thein_0217 Thein_0217 219992 221062 + CRISPR-associated RAMP protein%2C Cmr1 family InterPro IPR007522~KEGG: pth:PTH_0707 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated RAMP protein%2C Cmr1 family~IMG reference gene:2505283501~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr1 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0217 Thein_0218 Thein_0218 Thein_0218 221067 222287 + protein of unknown function DUF324 InterPro IPR005537~KEGG: adg:Adeg_0804 protein of unknown function DUF324~PFAM: protein of unknown function DUF324~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283502~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0218 Thein_0219 Thein_0219 Thein_0219 222274 222510 + hypothetical protein KEGG: pth:PTH_1920 hypothetical protein~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2505283503 gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0219 Thein_0220 Thein_0220 Thein_0220 222494 223171 + Domain of unknown function DUF1814 InterPro IPR014942~KEGG: pth:PTH_1920 hypothetical protein~PFAM: Domain of unknown function DUF1814~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2505283504~PFAM: Domain of unknown function (DUF1814) gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0220 Thein_0221 Thein_0221 Thein_0221 223173 226454 + hypothetical protein KEGG: rrs:RoseRS_2590 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283505 gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0221 Thein_0222 Thein_0222 Thein_0222 226447 227559 + CRISPR-associated RAMP protein%2C Cmr4 family COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR005537:IPR013410~KEGG: pth:PTH_0712 hypothetical protein~PFAM: protein of unknown function DUF324~SPTR: Uncharacterized protein%3B~TIGRFAM: CRISPR-associated RAMP protein%2C Cmr4 family~IMG reference gene:2505283506~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0222 Thein_0223 Thein_0223 Thein_0223 227556 227969 + hypothetical protein KEGG: cli:Clim_0934 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283507 gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0223 Thein_0224 Thein_0224 Thein_0224 227966 228919 + protein of unknown function DUF324 InterPro IPR005537~KEGG: kol:Kole_0662 protein of unknown function DUF324~PFAM: protein of unknown function DUF324~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283508~PFAM: RAMP superfamily gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0224 Thein_0225 Thein_0225 Thein_0225 229442 229990 + Fe-S cluster domain protein COGs: COG4871 conserved hypothetical protein~InterPro IPR007202~KEGG: afu:AF2246 hypothetical protein~PFAM: Fe-S cluster domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283509~PFAM: Putative Fe-S cluster gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0225 Thein_0226 Thein_0226 Thein_0226 230424 231875 + hypothetical protein KEGG: dau:Daud_1816 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283510 gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0226 Thein_0227 Thein_0227 Thein_0227 231877 232827 + CRISPR-associated autoregulator%2C DevR family COGs: COG1857 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR010154:IPR013414~KEGG: tte:TTE2662 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated regulatory protein%2C DevR family%3B CRISPR-associated autoregulator DevR family~IMG reference gene:2505283511~TIGRFAM: CRISPR-associated autoregulator DevR family%3B CRISPR-associated protein Cas7/Cst2/DevR%2C subtype I-B/TNEAP gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0227 Thein_0228 Thein_0228 Thein_0228 232815 233540 + CRISPR-associated protein Cas5 InterPro IPR013422~KEGG: tte:TTE2661 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated protein Cas5~IMG reference gene:2505283512~PFAM: CRISPR-associated protein (Cas_Cas5)~TIGRFAM: CRISPR-associated protein Cas5%2C N-terminal domain gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0228 Thein_0229 Thein_0229 Thein_0229 233525 235705 + metal dependent phosphohydrolase COGs: COG1203 helicase~InterProIPR006674:IPR011545:IPR001650:IPR014021:IPR 006483:IPR006474:IPR003607:IPR014001~KEGG: dau:Daud_1813 metal dependent phosphohydrolase~PFAM: DEAD/DEAH box helicase domain protein%3B metal-dependent phosphohydrolase HD sub domain%3B helicase domain protein~SMART: DEAD-like helicase %3B metal-dependent phosphohydrolase HD region%3B helicase domain protein~SPTR: Metal dependent phosphohydrolase%3B~TIGRFAM: CRISPR-associated helicase Cas3%3B CRISPR-associated HD domain protein~IMG reference gene:2505283513~PFAM: HD domain%3B DEAD/DEAH box helicase~TIGRFAM: CRISPR-associated helicase Cas3%3B CRISPR-associated endonuclease Cas3-HD gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0229 Thein_0230 Thein_0230 Thein_0230 235802 236035 + transcriptional regulator%2C AbrB family InterPro IPR007159:IPR006339~KEGG: pho:PHS014.3n hypothetical protein~PFAM: SpoVT/AbrB domain-containing protein~SPTR: Transcriptional regulator AbrB%3B~TIGRFAM: transcriptional regulator%2C AbrB family~IMG reference gene:2505283514~PFAM: SpoVT / AbrB like domain~TIGRFAM: looped-hinge helix DNA binding domain%2C AbrB family gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0230 Thein_0231 Thein_0231 Thein_0231 236035 236532 + CRISPR-associated protein Cas4 COGs: COG1468 RecB family exonuclease~InterPro IPR013343~KEGG: hth:HTH_1246 CRISPR-associated exonuclease~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated protein Cas4~IMG reference gene:2505283515~PFAM: Domain of unknown function DUF83~TIGRFAM: CRISPR-associated protein Cas4 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0231 Thein_0232 Thein_0232 Thein_0232 236948 237940 + CRISPR-associated protein Cas1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR002729:IPR019858~KEGG: ddf:DEFDS_0556 CRISPR-associated protein Cas1~PFAM: protein of unknown function DUF48~SPTR: CRISPR-associated protein Cas1%3B~TIGRFAM: CRISPR-associated protein Cas1~IMG reference gene:2505283516~PFAM: CRISPR associated protein Cas1~TIGRFAM: CRISPR-associated endonuclease Cas1%2C subtype I-B/HMARI/TNEAP%3B CRISPR-associated endonuclease Cas1 gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0232 Thein_0233 Thein_0233 Thein_0233 237940 238206 + CRISPR-associated protein Cas2 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR021127~KEGG: dhd:Dhaf_3930 CRISPR-associated protein Cas2~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated protein Cas2~IMG reference gene:2505283517~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0233 Thein_0234 Thein_0234 Thein_0234 242648 243901 - transposase IS116/IS110/IS902 family protein InterPro IPR003346~KEGG: dat:HRM2_46600 transposase for insertion sequences IS116%2C IS110 and IS902 (IS111A/IS1328/IS1533 family protein)~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase (IS111A/IS1328/IS1533 family protein)%3B~IMG reference gene:2505283518~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0234 Thein_0235 Thein_0235 Thein_0235 244893 245516 + formylmethanofuran dehydrogenase subunit E region COGs: COG2191 Formylmethanofuran dehydrogenase subunit E~InterPro IPR003814~KEGG: cte:CT1717 tungsten formylmethanofuran dehydrogenase%2C subunit E%2C putative~PFAM: formylmethanofuran dehydrogenase subunit E region~SPTR: Tungsten formylmethanofuran dehydrogenase%2C subunit E%2C putative%3B~IMG reference gene:2505283519~PFAM: FmdE%2C Molybdenum formylmethanofuran dehydrogenase operon gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0235 Thein_0236 Thein_0236 Thein_0236 245600 246352 + protein of unknown function DUF81 COGs: COG0730 permease~InterPro IPR002781~KEGG: mev:Metev_0515 hypothetical protein~PFAM: protein of unknown function DUF81~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283520~PFAM: Sulfite exporter TauE/SafE gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0236 Thein_0237 Thein_0237 Thein_0237 246352 246561 + hypothetical protein IMG reference gene:2505283521 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0237 Thein_0238 Thein_0238 Thein_0238 246728 247093 - hypothetical protein KEGG: gsu:GSU2936 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283522 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0238 Thein_0239 Thein_0239 Thein_0239 247121 248035 - hypothetical protein KEGG: geo:Geob_1340 hypothetical protein~SPTR: Cytochrome c family protein%3B~manually curated~IMG reference gene:2505283523 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0239 Thein_0240 Thein_0240 Thein_0240 248184 249011 - histidine kinase HAMP region domain protein InterPro IPR003660~KEGG: hth:HTH_1828 putative sensor with HAMP domain~PFAM: histidine kinase HAMP region domain protein~SPTR: Sensory transduction histidine kinase%3B~IMG reference gene:2505283524~PFAM: HAMP domain gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0240 Thein_0241 Thein_0241 Thein_0241 249008 249610 - hypothetical protein KEGG: der:Dere_GG14482 GG14482 gene product from transcript GG14482-RA~SPTR: GG14482%3B~IMG reference gene:2505283525 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0241 Thein_0242 Thein_0242 Thein_0242 249607 250395 - hypothetical protein KEGG: mxa:MXAN_2001 FHA domain-containing protein~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505283526 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0242 Thein_0243 Thein_0243 Thein_0243 250452 252599 - ribonuclease R COGs: COG0557 Exoribonuclease R~InterProIPR013223:IPR001900:IPR003029:IPR011805:IPR 004476:IPR011129~KEGG: ate:Athe_2108 ribonuclease R~PFAM: ribonuclease II%3B Ribonuclease B OB region domain%3B RNA binding S1 domain protein~PRIAM: Exoribonuclease II~SMART: Cold shock protein~SPTR: Ribonuclease R%3B~TIGRFAM: ribonuclease R%3B VacB and RNase II family 3'-5' exoribonuclease~IMG reference gene:2505283527~PFAM: Ribonuclease B OB domain%3B RNB domain%3B S1 RNA binding domain~TIGRFAM: ribonuclease R%3B VacB and RNase II family 3'-5' exoribonucleases gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0243 Thein_0244 Thein_0244 Thein_0244 252599 252973 - hypothetical protein KEGG: xac:XAC3590 oxidoreductase~SPTR: Oxidoreductase%3B~IMG reference gene:2505283528 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0244 Thein_0245 Thein_0245 Thein_0245 252984 253313 - histidine triad (HIT) protein COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase~InterPro IPR001310:IPR019808~KEGG: dat:HRM2_38420 Hit~PFAM: histidine triad (HIT) protein~SPTR: Hit%3B~IMG reference gene:2505283529~PFAM: Scavenger mRNA decapping enzyme C-term binding gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0245 Thein_0246 Thein_0246 Thein_0246 253337 254767 - protein of unknown function UPF0027 COGs: COG1690 conserved hypothetical protein~InterPro IPR001233~KEGG: drt:Dret_0333 protein of unknown function UPF0027~PFAM: protein of unknown function UPF0027~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283530~PFAM: Uncharacterized protein family UPF0027 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0246 Thein_0247 Thein_0247 Thein_0247 255204 256550 + pseudogene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0247 Thein_0248 Thein_0248 Thein_0248 256932 257435 - peptide deformylase COGs: COG0242 N-formylmethionyl-tRNA deformylase~InterPro IPR000181~KEGG: tye:THEYE_A0329 peptide deformylase~PFAM: formylmethionine deformylase~SPTR: Peptide deformylase%3B~TIGRFAM: peptide deformylase~IMG reference gene:2505283532~PFAM: Polypeptide deformylase~TIGRFAM: peptide deformylase gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0248 Thein_0249 Thein_0249 Thein_0249 257465 258415 - inner-membrane translocator COGs: COG4177 ABC-type branched-chain amino acid transport system permease component~InterPro IPR001851~KEGG: sfu:Sfum_1679 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2505283533~PFAM: Branched-chain amino acid transport system / permease component gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0249 Thein_0250 Thein_0250 Thein_0250 258412 259284 - inner-membrane translocator COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components~InterPro IPR001851~KEGG: gsu:GSU1733 branched-chain amino acid ABC transporter%2C permease protein~PFAM: inner-membrane translocator~SPTR: Branched-chain amino acid ABC transporter%2C permease protein%3B~IMG reference gene:2505283534~PFAM: Branched-chain amino acid transport system / permease component gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0250 Thein_0251 Thein_0251 Thein_0251 259399 260538 - Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR000709:IPR001828~KEGG: gsu:GSU1734 branched-chain amino acid ABC transporter%2C periplasmic amino acid-binding protein%2C putative~PFAM: Extracellular ligand-binding receptor~SPTR: Branched-chain amino acid ABC transporter%2C periplasmic amino acid-binding protein%2C putative%3B~IMG reference gene:2505283535~PFAM: Receptor family ligand binding region gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0251 Thein_0252 Thein_0252 Thein_0252 260617 261078 + hypothetical protein KEGG: dre:322309 sirtuin 2 (silent mating type information regulation 2%2C homolog) 2 (S. cerevisiae)~SPTR: Sirtuin 2 (Silent mating type information regulation 2%2C homolog) 2 (S. cerevisiae)%3B~IMG reference gene:2505283536 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0252 Thein_0253 Thein_0253 Thein_0253 261345 262427 + 3-isopropylmalate dehydrogenase COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase~InterPro IPR001804:IPR019818~KEGG: tye:THEYE_A0114 3-isopropylmalate dehydrogenase~PFAM: isocitrate/isopropylmalate dehydrogenase~PRIAM: 3-isopropylmalate dehydrogenase~SPTR: 3-isopropylmalate dehydrogenase%3B~IMG reference gene:2505283537~PFAM: Isocitrate/isopropylmalate dehydrogenase~TIGRFAM: 3-isopropylmalate dehydrogenase gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0253 Thein_0254 Thein_0254 Thein_0254 262427 263734 + thiamine biosynthesis protein ThiC COGs: COG0422 Thiamine biosynthesis protein ThiC~InterPro IPR002817~KEGG: gem:GM21_3893 thiamine biosynthesis protein ThiC~PFAM: thiamine biosynthesis protein ThiC~SPTR: Thiamine biosynthesis protein ThiC%3B~TIGRFAM: thiamine biosynthesis protein ThiC~IMG reference gene:2505283538~PFAM: ThiC family~TIGRFAM: thiamine biosynthesis protein ThiC gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0254 Thein_0255 Thein_0255 Thein_0255 263745 265361 + hypothetical protein InterPro IPR007527~KEGG: tte:TTE1567 hypothetical protein~SPTR: SWIM zinc finger domain protein%3B~IMG reference gene:2505283539~PFAM: SWIM zinc finger gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0255 Thein_0256 Thein_0256 Thein_0256 265371 266906 - AAA-ATPase InterPro IPR018631:IPR012547~KEGG: saf:SULAZ_0155 conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain~PFAM: AAA-ATPase-like%3B protein of unknown function DUF1703~SPTR: Conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain%3B~IMG reference gene:2505283540~PFAM: Protein of unknown function (DUF1703)%3B Predicted AAA-ATPase gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0256 Thein_0257 Thein_0257 Thein_0257 266921 270178 - carbamoyl-phosphate synthase%2C large subunit COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ)~InterProIPR005483:IPR005481:IPR005479:IPR005480:IPR 011607:IPR011761:IPR006275~KEGG: dal:Dalk_3481 carbamoyl-phosphate synthase%2C large subunit~PFAM: Carbamoyl-phosphate synthase L chain ATP-binding%3B Carbamoyl-phosphate synthetase large chain domain protein%3B Carbamoyl-phosphate synthetase large chain oligomerisation%3B MGS domain protein~SPTR: Carbamoyl-phosphate synthase%2C large subunit%3B~TIGRFAM: carbamoyl-phosphate synthase%2C large subunit~IMG reference gene:2505283541~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain%3B MGS-like domain%3B Carbamoyl-phosphate synthetase large chain%2C oligomerisation domain%3B Carbamoyl-phosphate synthase L chain%2C N-terminal domain~TIGRFAM: carbamoyl-phosphate synthase%2C large subunit gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0257 Thein_0258 Thein_0258 Thein_0258 270187 272073 - PpiC-type peptidyl-prolyl cis-trans isomerase COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase~InterPro IPR000297~KEGG: dol:Dole_0268 PpiC-type peptidyl-prolyl cis-trans isomerase~PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase~SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2505283542~PFAM: SurA N-terminal domain%3B PPIC-type PPIASE domain gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0258 Thein_0259 Thein_0259 Thein_0259 272121 273080 - glycoside hydrolase family 3 domain protein COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR001764~KEGG: dak:DaAHT2_2367 glycoside hydrolase family 3 domain protein~PFAM: glycoside hydrolase family 3 domain protein~SPTR: Glycoside hydrolase family 3 domain protein%3B~IMG reference gene:2505283543~PFAM: Glycosyl hydrolase family 3 N terminal domain gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0259 Thein_0260 Thein_0260 Thein_0260 273064 274959 - PAS/PAC sensor hybrid histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR004358:IPR013655:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR000700~KEGG: dak:DaAHT2_2564 multi-sensor hybrid histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B PAS fold-3 domain protein%3B histidine kinase A domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B PAS domain containing protein%3B histidine kinase A domain protein%3B response regulator receiver~SPTR: Multi-sensor hybrid histidine kinase%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505283544~PFAM: Response regulator receiver domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0260 Thein_0261 Thein_0261 Thein_0261 275107 275841 + 1-acyl-sn-glycerol-3-phosphate acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123:IPR004552~KEGG: dak:DaAHT2_0301 1-acyl-sn-glycerol-3-phosphate acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase~SPTR: 1-acyl-sn-glycerol-3-phosphate acyltransferase%3B~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase~IMG reference gene:2505283545~PFAM: Acyltransferase~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0261 Thein_0262 Thein_0262 Thein_0262 275827 276732 - D-alanine/D-alanine ligase COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein~InterProIPR011127:IPR011095:IPR011761:IPR005905:IPR 000291~KEGG: dak:DaAHT2_1971 D-alanine/D-alanine ligase~PFAM: D-alanine--D-alanine ligase domain protein~PRIAM: D-alanine--D-alanine ligase~SPTR: D-alanine--D-alanine ligase%3B~TIGRFAM: D-alanine/D-alanine ligase~IMG reference gene:2505283546~PFAM: D-ala D-ala ligase N-terminus%3B D-ala D-ala ligase C-terminus~TIGRFAM: D-alanine--D-alanine ligase gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0262 Thein_0263 Thein_0263 Thein_0263 276722 277279 - metal dependent phosphohydrolase InterPro IPR006674:IPR006675~KEGG: sfu:Sfum_4103 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SPTR: Metal dependent phosphohydrolase%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505283547~PFAM: HD domain~TIGRFAM: uncharacterized domain HDIG gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0263 Thein_0264 Thein_0264 Thein_0264 277461 278438 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein COGs: COG1052 Lactate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140~KEGG: pfs:PFLU3778 D-lactate dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~SPTR: Probable D-lactate dehydrogenase%3B~IMG reference gene:2505283548~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0264 Thein_0265 Thein_0265 Thein_0265 278419 279123 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase~InterPro IPR001228~KEGG: aca:ACP_1617 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase%3B~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~IMG reference gene:2505283549~PFAM: Uncharacterized protein family UPF0007~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0265 Thein_0266 Thein_0266 Thein_0266 279083 279760 - Deoxyribonuclease V COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V)~InterPro IPR007581~KEGG: tpt:Tpet_0932 deoxyribonuclease V~PFAM: Endonuclease V~PRIAM: Deoxyribonuclease V~SPTR: Endonuclease V%3B~IMG reference gene:2505283550~PFAM: Endonuclease V gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0266 Thein_0267 Thein_0267 Thein_0267 279736 281151 - cytoplasmic peptidoglycan synthetase domain protein COGs: COG0773 UDP-N-acetylmuramate-alanine ligase~InterPro IPR000713:IPR013221:IPR004101~KEGG: dak:DaAHT2_1931 UDP-N-acetylmuramate~PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein~SPTR: UDP-N-acetylmuramate%3B~IMG reference gene:2505283551~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase%3B UDP-N-acetylmuramate--alanine ligase gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0267 Thein_0268 Thein_0268 Thein_0268 281369 284917 + AsmA family protein InterPro IPR007844~KEGG: sfu:Sfum_3774 membrane protein-like~PFAM: AsmA family protein~SPTR: Membrane protein-like%3B~IMG reference gene:2505283553~PFAM: AsmA family gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0268 Thein_0269 Thein_0269 Thein_0269 284920 285288 + DNA ligase D%2C 3'-phosphoesterase domain protein InterPro IPR014144~KEGG: nfa:nfa6770 ATP-dependent DNA ligase~SPTR: Putative ATP-dependent DNA ligase%3B~TIGRFAM: DNA ligase D%2C 3'-phosphoesterase domain protein~IMG reference gene:2505283554~TIGRFAM: DNA ligase D%2C 3'-phosphoesterase domain gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0269 Thein_0270 Thein_0270 Thein_0270 285285 286049 - flagellar synthesis regulator FleN%2C putative COGs: COG0455 ATPase involved in chromosome partitioning~KEGG: dvl:Dvul_1300 flagellar synthesis regulator FleN%2C putative~SPTR: Flagellar synthesis regulator FleN%2C putative%3B~IMG reference gene:2505283555~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0270 Thein_0271 Thein_0271 Thein_0271 286039 286743 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: sde:Sde_1595 response regulator receiver domain-containing protein~PFAM: GGDEF domain containing protein~SMART: GGDEF domain containing protein~SPTR: GGDEF domain%3B~TIGRFAM: diguanylate cyclase~IMG reference gene:2505283556~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0271 Thein_0272 Thein_0272 Thein_0272 287269 291372 - DNA-directed RNA polymerase%2C beta' subunit COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit~InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR012754:IPR006592~KEGG: dak:DaAHT2_1458 DNA-directed RNA polymerase%2C beta' subunit~PFAM: RNA polymerase Rpb1 domain 1%3B RNA polymerase alpha subunit%3B RNA polymerase Rpb1 domain 3%3B RNA polymerase Rpb1 domain 4%3B RNA polymerase Rpb1 domain 5~SMART: RNA polymerase I subunit A domain protein~SPTR: DNA-directed RNA polymerase subunit beta'%3B~TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit~IMG reference gene:2505283557~PFAM: RNA polymerase Rpb1%2C domain 2%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 1%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 5~TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit%2C predominant form gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0272 Thein_0273 Thein_0273 Thein_0273 291434 295525 - DNA-directed RNA polymerase%2C beta subunit COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit~InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243:IPR007121~KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase%2C beta subunit~PFAM: RNA polymerase Rpb2 domain 6%3B RNA polymerase Rpb2 domain 3%3B RNA polymerase beta subunit%3B RNA polymerase Rpb2 domain 2%3B DNA-directed RNA polymerase%2C beta subunit%2C external 1 domain%3B RNA polymerase Rpb2 domain 7~SPTR: DNA-directed RNA polymerase subunit beta%3B~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit~IMG reference gene:2505283558~PFAM: RNA polymerase Rpb2%2C domain 3%3B RNA polymerase Rpb2%2C domain 6%3B RNA polymerase beta subunit external 1 domain%3B RNA polymerase Rpb2%2C domain 2%3B RNA polymerase beta subunit%3B RNA polymerase Rpb2%2C domain 7~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0273 Thein_0274 Thein_0274 Thein_0274 295623 296012 - ribosomal protein L7/L12 COGs: COG0222 Ribosomal protein L7/L12~InterPro IPR013823:IPR000206~KEGG: dak:DaAHT2_1460 ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12~SPTR: Ribosomal protein L7/L12%3B~TIGRFAM: ribosomal protein L7/L12~IMG reference gene:2505283559~PFAM: Ribosomal protein L7/L12 C-terminal domain~TIGRFAM: ribosomal protein L7/L12 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0274 Thein_0275 Thein_0275 Thein_0275 296039 296569 - ribosomal protein L10 COGs: COG0244 Ribosomal protein L10~InterPro IPR001790~KEGG: gem:GM21_3337 50S ribosomal protein L10~PFAM: ribosomal protein L10~SPTR: 50S ribosomal protein L10%3B~IMG reference gene:2505283560~PFAM: Ribosomal protein L10 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0275 Thein_0276 Thein_0276 Thein_0276 296747 297463 - ribosomal protein L1 COGs: COG0081 Ribosomal protein L1~InterPro IPR002143:IPR005878~KEGG: dal:Dalk_1924 50S ribosomal protein L1~PFAM: ribosomal protein L1~SPTR: 50S ribosomal protein L1%3B~TIGRFAM: ribosomal protein L1~IMG reference gene:2505283561~PFAM: Ribosomal protein L1p/L10e family~TIGRFAM: ribosomal protein L1%2C bacterial/chloroplast gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0276 Thein_0277 Thein_0277 Thein_0277 297467 297895 - ribosomal protein L11 COGs: COG0080 Ribosomal protein L11~InterProIPR020784:IPR020783:IPR006519:IPR000911:IPR 020785~KEGG: tna:CTN_0219 50S ribosomal protein L11~PFAM: Ribosomal protein L11-like~SMART: ribosomal protein L11~SPTR: 50S ribosomal protein L11%3B~TIGRFAM: ribosomal protein L11~IMG reference gene:2505283562~PFAM: Ribosomal protein L11%2C RNA binding domain%3B Ribosomal protein L11%2C N-terminal domain~TIGRFAM: 50S ribosomal protein L11 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0277 Thein_0278 Thein_0278 Thein_0278 297912 298439 - NusG antitermination factor COGs: COG0250 Transcription antiterminator~InterPro IPR001062:IPR006645:IPR005824:IPR015869~KEGG: dol:Dole_0697 NusG antitermination factor~PFAM: NGN domain-containing protein%3B KOW domain protein~SMART: NGN domain-containing protein%3B KOW domain protein~SPTR: Transcription antitermination protein nusG%3B~TIGRFAM: transcription termination/antitermination factor NusG~IMG reference gene:2505283563~PFAM: Transcription termination factor nusG%3B KOW motif~TIGRFAM: transcription termination/antitermination factor NusG gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0278 Thein_0279 Thein_0279 Thein_0279 298441 298734 - preprotein translocase%2C SecE subunit InterPro IPR001901:IPR005807~KEGG: dol:Dole_0696 preprotein translocase%2C SecE subunit~PFAM: protein secE/sec61-gamma protein~SPTR: Preprotein translocase%2C SecE subunit%3B~TIGRFAM: preprotein translocase%2C SecE subunit~IMG reference gene:2505283564~PFAM: SecE/Sec61-gamma subunits of protein translocation complex~TIGRFAM: preprotein translocase%2C SecE subunit%2C bacterial gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0279 Thein_0280 Thein_0280 Thein_0280 298838 299008 - ribosomal protein L33 InterPro IPR001705:IPR018264~KEGG: ttj:TTHA0250 50S ribosomal protein L33~PFAM: ribosomal protein L33~SPTR: 50S ribosomal protein L33%3B~TIGRFAM: ribosomal protein L33~IMG reference gene:2505283566~PFAM: Ribosomal protein L33~TIGRFAM: ribosomal protein L33%2C bacterial type gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0280 Thein_0281 Thein_0281 Thein_0281 299020 300219 - translation elongation factor Tu COGs: COG0050 GTPase - translation elongation factors~InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225~KEGG: ddf:DEFDS_1787 translation elongation factor Tu~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor Tu domain-containing protein~SPTR: Elongation factor Tu%3B~TIGRFAM: translation elongation factor Tu%3B small GTP-binding protein~IMG reference gene:2505283567~PFAM: Elongation factor Tu domain 2%3B Elongation factor Tu C-terminal domain%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation elongation factor TU gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0281 Thein_0282 Thein_0282 Thein_0282 300621 301895 - heterodisulfide reductase%2C subunit E (HdrE) COGs: COG1150 Heterodisulfide reductase subunit C~InterPro IPR017900~KEGG: dps:DP1108 heterodisulfide reductase%2C subunit E (HdrE)~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding%3B~IMG reference gene:2505283571 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0282 Thein_0283 Thein_0283 Thein_0283 301908 304124 - methyl-viologen-reducing hydrogenase delta subunit COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterProIPR013027:IPR003953:IPR001327:IPR003813:IPR 017896:IPR017900~KEGG: afu:AF0662 heterodisulfide reductase%2C subunit A/methylviologen reducing hydrogenase%2C subunit delta~PFAM: methyl-viologen-reducing hydrogenase delta subunit%3B fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: Methyl-viologen-reducing hydrogenase delta subunit%3B~IMG reference gene:2505283572~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0283 Thein_0284 Thein_0284 Thein_0284 304129 305382 - FAD dependent oxidoreductase COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterPro IPR006076:IPR017900~KEGG: dal:Dalk_1568 heterodisulfide reductase%2C subunit A (HdrA)~PFAM: FAD dependent oxidoreductase~SPTR: Heterodisulfide reductase%2C subunit A (HdrA)%3B~IMG reference gene:2505283573~PFAM: FAD dependent oxidoreductase gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0284 Thein_0285 Thein_0285 Thein_0285 305524 307524 - adenylylsulfate reductase%2C alpha subunit COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit~InterPro IPR003953:IPR011803~KEGG: drt:Dret_1966 adenylylsulfate reductase subunit alpha~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein~SPTR: AprA%3B~TIGRFAM: adenylylsulfate reductase%2C alpha subunit~IMG reference gene:2505283574~PFAM: domain%3B FAD binding domain~TIGRFAM: adenosine phosphosulphate reductase%2C alpha subunit gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0285 Thein_0286 Thein_0286 Thein_0286 307564 308016 - adenylylsulfate reductase%2C beta subunit InterPro IPR017896:IPR011802:IPR017900~KEGG: dvm:DvMF_2892 adenylylsulfate reductase%2C beta subunit~SPTR: AprB%3B~TIGRFAM: adenylylsulfate reductase%2C beta subunit~IMG reference gene:2505283575~PFAM: Adenosine-5'-phosphosulfate reductase beta subunit%3B~TIGRFAM: adenosine phosphosulphate reductase%2C beta subunit gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0286 Thein_0287 Thein_0287 Thein_0287 308295 308888 + formate dehydrogenase accessory protein FdhD COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A~KEGG: saf:SULAZ_1061 formate dehydrogenase accessory protein FdhD~SPTR: Formate dehydrogenase accessory protein FdhD%3B~IMG reference gene:2505283576 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0287 Thein_0288 Thein_0288 Thein_0288 309019 309669 - Ni/Fe-hydrogenase%2C b-type cytochrome subunit COGs: COG1969 Ni Fe-hydrogenase I cytochrome b subunit~InterPro IPR000516~KEGG: dps:DP0576 Ni/Fe-hydrogenase%2C cytochrome subunit~SPTR: Probable Ni/Fe-hydrogenase%2C cytochrome subunit%3B~TIGRFAM: Ni/Fe-hydrogenase%2C b-type cytochrome subunit~IMG reference gene:2505283577~PFAM: Cytochrome b(N-terminal)/b6/petB~TIGRFAM: Ni/Fe-hydrogenase%2C b-type cytochrome subunit gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0288 Thein_0289 Thein_0289 Thein_0289 309714 311414 - nickel-dependent hydrogenase large subunit COGs: COG0374 Ni Fe-hydrogenase I large subunit~InterPro IPR001501:IPR018194~KEGG: dps:DP0575 Ni/Fe-hydrogenase%2C large subunit~PFAM: nickel-dependent hydrogenase large subunit~SPTR: Probable Ni/Fe-hydrogenase%2C large subunit%3B~IMG reference gene:2505283578~PFAM: Nickel-dependent hydrogenase gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0289 Thein_0290 Thein_0290 Thein_0290 311418 312497 - hydrogenase (NiFe) small subunit HydA COGs: COG1740 Ni Fe-hydrogenase I small subunit~InterPro IPR001821:IPR006137:IPR017909:IPR006311~KEGG: dps:DP0574 Ni/Fe-hydrogenase%2C small subunit~PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit~PRIAM: Hydrogenase (acceptor)~SPTR: Probable Ni/Fe-hydrogenase%2C small subunit%3B~TIGRFAM: hydrogenase (NiFe) small subunit HydA~IMG reference gene:2505283579~PFAM: NADH ubiquinone oxidoreductase%2C 20 Kd subunit~TIGRFAM: hydrogenase (NiFe) small subunit (hydA)%3B Tat (twin-arginine translocation) pathway signal sequence gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0290 Thein_0291 Thein_0291 Thein_0291 312697 313194 + hydrogenase maturation protease COGs: COG0680 Ni Fe-hydrogenase maturation factor~InterPro IPR000671~KEGG: tjr:TherJR_0260 hydrogenase maturation protease~PFAM: peptidase M52 hydrogen uptake protein~SPTR: Hydrogenase maturation protease%3B~TIGRFAM: hydrogenase maturation protease~IMG reference gene:2505283580~PFAM: Hydrogenase maturation protease~TIGRFAM: hydrogenase expression/formation protein%3B hydrogenase maturation protease gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0291 Thein_0292 Thein_0292 Thein_0292 313185 313415 + hydrogenase assembly chaperone hypC/hupF COGs: COG0298 Hydrogenase maturation factor~InterPro IPR001109:IPR019812~KEGG: glo:Glov_3064 hydrogenase assembly chaperone HypC/HupF~PFAM: hydrogenase expression/formation protein (HUPF/HYPC)~SPTR: Hydrogenase assembly chaperone hypC/hupF%3B~TIGRFAM: hydrogenase assembly chaperone hypC/hupF~IMG reference gene:2505283581~PFAM: HupF/HypC family~TIGRFAM: hydrogenase assembly chaperone HypC/HupF gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0292 Thein_0293 Thein_0293 Thein_0293 313408 313758 + hydrogenase expression/synthesis HypA COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)~InterPro IPR000688~KEGG: hhe:HH0808 hydrogenase nickel incorporation protein~PFAM: hydrogenase expression/synthesis HypA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283582~PFAM: Hydrogenase expression/synthesis hypA family~TIGRFAM: hydrogenase nickel insertion protein HypA gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0293 Thein_0294 Thein_0294 Thein_0294 313761 314438 + hydrogenase accessory protein HypB COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase~InterPro IPR003495:IPR004392:IPR012202~KEGG: pmx:PERMA_0918 hydrogenase accessory protein HypB~PFAM: cobalamin synthesis protein P47K~SPTR: Hydrogenase accessory protein HypB%3B~TIGRFAM: hydrogenase accessory protein HypB~IMG reference gene:2505283583~PFAM: CobW/HypB/UreG%2C nucleotide-binding domain~TIGRFAM: hydrogenase accessory protein HypB gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0294 Thein_0295 Thein_0295 Thein_0295 314405 316711 + (NiFe) hydrogenase maturation protein HypF COGs: COG0068 Hydrogenase maturation factor~InterProIPR001792:IPR011125:IPR006070:IPR004421:IPR 017968~KEGG: sat:SYN_00600 hydrogenase maturation protein~PFAM: SUA5/yciO/yrdC domain%3B acylphosphatase~SPTR: Hydrogenase maturation protein%3B~TIGRFAM: [NiFe] hydrogenase maturation protein HypF~IMG reference gene:2505283584~PFAM: HypF finger%3B yrdC domain%3B Glycoprotease family%3B Acylphosphatase~TIGRFAM: [NiFe] hydrogenase maturation protein HypF gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0295 Thein_0296 Thein_0296 Thein_0296 316681 317964 - MiaB-like tRNA modifying enzyme YliG COGs: COG0621 2-methylthioadenine synthetase~InterProIPR013848:IPR007197:IPR002792:IPR005839:IPR 005840:IPR006638:IPR020612~KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG~PFAM: protein of unknown function UPF0004 %3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Ribosomal protein S12p Asp88 methylthiotransferase%3B~TIGRFAM: MiaB-like tRNA modifying enzyme YliG%3B RNA modification enzyme%2C MiaB family~IMG reference gene:2505283585~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: ribosomal protein S12 methylthiotransferase RimO%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0296 Thein_0297 Thein_0297 Thein_0297 317969 318343 - aspartate 1-decarboxylase COGs: COG0853 Aspartate 1-decarboxylase~InterPro IPR003190~KEGG: tau:Tola_2304 aspartate 1-decarboxylase~PFAM: aspartate decarboxylase~PRIAM: Aspartate 1-decarboxylase~SPTR: Aspartate 1-decarboxylase%3B~TIGRFAM: aspartate 1-decarboxylase~IMG reference gene:2505283586~PFAM: Aspartate decarboxylase~TIGRFAM: L-aspartate-alpha-decarboxylase gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0297 Thein_0298 Thein_0298 Thein_0298 318348 319193 - pantoate/beta-alanine ligase COGs: COG0414 Panthothenate synthetase~InterPro IPR003721:IPR004821~KEGG: sat:SYN_00420 pantoate--beta-alanine ligase~PFAM: Pantoate-beta-alanine ligase~SPTR: Pantothenate synthetase%3B~TIGRFAM: pantoate/beta-alanine ligase%3B cytidyltransferase-related domain protein~manually curated~IMG reference gene:2505283587~PFAM: Pantoate-beta-alanine ligase~TIGRFAM: pantoate--beta-alanine ligase%3B cytidyltransferase-related domain gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0298 Thein_0299 Thein_0299 Thein_0299 319196 320101 - ErfK/YbiS/YcfS/YnhG family protein COGs: COG3034 conserved hypothetical protein~InterPro IPR005490~KEGG: ckr:CKR_0710 hypothetical protein~PFAM: ErfK/YbiS/YcfS/YnhG family protein~SPTR: ErfK/YbiS/YcfS/YnhG family protein%3B~IMG reference gene:2505283588~PFAM: L%2CD-transpeptidase catalytic domain gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0299 Thein_0300 Thein_0300 Thein_0300 320190 320399 + hypothetical protein KEGG: ddf:DEFDS_0669 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283589 gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0300 Thein_0301 Thein_0301 Thein_0301 320411 321175 - cobyrinic acid ac-diamide synthase COGs: COG3640 CO dehydrogenase maturation factor~InterPro IPR014433~KEGG: dak:DaAHT2_1179 cobyrinic acid ac-diamide synthase~SPTR: Cobyrinic acid a%2Cc-diamide synthase%3B~IMG reference gene:2505283590~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0301 Thein_0302 Thein_0302 Thein_0302 321175 322776 - 2-isopropylmalate synthase/homocitrate synthase family protein COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR000891:IPR013709:IPR005675:IPR002034~KEGG: sfu:Sfum_2174 putative alpha-isopropylmalate/homocitrate synthase family transferase~PFAM: LeuA allosteric (dimerisation) domain-containing protein%3B pyruvate carboxyltransferase~SPTR: 2-isopropylmalate synthase%3B~TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein~IMG reference gene:2505283591~PFAM: HMGL-like%3B LeuA allosteric (dimerisation) domain~TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0302 Thein_0303 Thein_0303 Thein_0303 322787 324019 - aspartate kinase COGs: COG0527 Aspartokinase~InterProIPR005260:IPR001341:IPR001048:IPR002912:IPR 001057:IPR018042~KEGG: pca:Pcar_1006 aspartate kinase~PFAM: aspartate/glutamate/uridylate kinase%3B amino acid-binding ACT domain protein~SPTR: Aspartokinase%3B~TIGRFAM: aspartate kinase%3B aspartate kinase%2C monofunctional class~IMG reference gene:2505283592~PFAM: ACT domain%3B Amino acid kinase family~TIGRFAM: aspartate kinase%2C monofunctional class%3B aspartate kinase gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0303 Thein_0304 Thein_0304 Thein_0304 324022 324324 - heat shock protein DnaJ domain protein InterPro IPR001623:IPR003095~KEGG: mhu:Mhun_0257 heat shock protein DnaJ-like~PFAM: heat shock protein DnaJ domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: Heat shock protein DnaJ-like%3B~IMG reference gene:2505283593~PFAM: DnaJ domain gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0304 Thein_0305 Thein_0305 Thein_0305 324481 325338 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283594 gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0305 Thein_0306 Thein_0306 Thein_0306 325702 326325 + nitrite and sulphite reductase 4Fe-4S region COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits~InterPro IPR006067:IPR017896:IPR017900~KEGG: drm:Dred_0697 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~PFAM: nitrite and sulphite reductase 4Fe-4S region~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B~IMG reference gene:2505283595~PFAM: Nitrite and sulphite reductase 4Fe-4S domain%3B 4Fe-4S binding domain gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0306 Thein_0307 Thein_0307 Thein_0307 326327 329062 + excinuclease ABC%2C A subunit COGs: COG0178 Excinuclease ATPase subunit~InterProIPR004602:IPR003439:IPR017871:IPR018254:IPR 003593~KEGG: nhl:Nhal_0131 excinuclease ABC%2C A subunit~PFAM: ABC transporter related~SPTR: Excinuclease ABC%2C A subunit%3B~TIGRFAM: excinuclease ABC%2C A subunit~IMG reference gene:2505283596~PFAM: ABC transporter~TIGRFAM: excinuclease ABC%2C A subunit gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0307 Thein_0308 Thein_0308 Thein_0308 329049 330782 - Radical SAM domain protein COGs: COG1032 Fe-S oxidoreductase~InterProIPR006158:IPR007197:IPR019734:IPR013026:IPR 006638~KEGG: dal:Dalk_4123 radical SAM domain protein~PFAM: Radical SAM domain protein%3B cobalamin B12-binding domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505283597~PFAM: Radical SAM superfamily%3B B12 binding domain gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0308 Thein_0309 Thein_0309 Thein_0309 330839 332458 + Radical SAM domain protein COGs: COG1032 Fe-S oxidoreductase~InterPro IPR007197:IPR006638~KEGG: sfu:Sfum_3475 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505283598~PFAM: Radical SAM superfamily gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0309 Thein_0310 Thein_0310 Thein_0310 332455 333036 - type IV pilus assembly PilZ InterPro IPR009875~KEGG: dak:DaAHT2_1202 type IV pilus assembly PilZ~PFAM: type IV pilus assembly PilZ~SPTR: Type IV pilus assembly PilZ%3B~IMG reference gene:2505283599~PFAM: PilZ domain gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0310 Thein_0311 Thein_0311 Thein_0311 333033 333806 - OmpA/MotB domain protein COGs: COG1360 Flagellar motor protein~InterPro IPR006665~KEGG: nwa:Nwat_2274 OmpA/MotB domain-containing protein~PFAM: OmpA/MotB domain protein~SPTR: OmpA family protein%3B~IMG reference gene:2505283600~PFAM: OmpA family gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0311 Thein_0312 Thein_0312 Thein_0312 333806 334564 - MotA/TolQ/ExbB proton channel COGs: COG1291 Flagellar motor component~InterPro IPR002898:IPR000540~KEGG: dak:DaAHT2_1204 MotA/TolQ/ExbB proton channel~PFAM: MotA/TolQ/ExbB proton channel~SPTR: MotA/TolQ/ExbB proton channel%3B~IMG reference gene:2505283601~PFAM: MotA/TolQ/ExbB proton channel family gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0312 Thein_0313 Thein_0313 Thein_0313 334754 335083 + hypothetical protein KEGG: nvi:100118438 stoned B~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283602 gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0313 Thein_0314 Thein_0314 Thein_0314 335080 335748 + ribulose-phosphate 3-epimerase COGs: COG0036 Pentose-5-phosphate-3-epimerase~InterPro IPR000056~KEGG: dak:DaAHT2_1975 ribulose-phosphate 3-epimerase~PFAM: ribulose-phosphate 3-epimerase~PRIAM: Ribulose-phosphate 3-epimerase~SPTR: Ribulose-phosphate 3-epimerase%3B~TIGRFAM: ribulose-phosphate 3-epimerase~IMG reference gene:2505283603~PFAM: Ribulose-phosphate 3 epimerase family~TIGRFAM: ribulose-phosphate 3-epimerase gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0314 Thein_0315 Thein_0315 Thein_0315 336345 337844 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089:IPR004090:IPR000727~KEGG: gob:Gobs_5008 methyl-accepting chemotaxis sensory transducer~PFAM: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SMART: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2505283604~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0315 Thein_0316 Thein_0316 Thein_0316 338100 339023 - DNA binding domain protein%2C excisionase family COGs: COG1910 Periplasmic molybdate-binding protein/domain~InterPro IPR010093:IPR000551~KEGG: dak:DaAHT2_2633 DNA binding domain protein%2C excisionase family~PFAM: regulatory protein MerR~SPTR: DNA binding domain protein%2C excisionase family%3B~TIGRFAM: DNA binding domain protein%2C excisionase family~IMG reference gene:2505283605~TIGRFAM: DNA binding domain%2C excisionase family gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0316 Thein_0317 Thein_0317 Thein_0317 339135 339962 + ABC transporter%2C periplasmic substrate-binding protein COGs: COG2998 ABC-type tungstate transport system permease component~KEGG: aco:Amico_1561 ABC transporter%2C periplasmic substrate-binding protein~SPTR: Tungstate ABC transporter%2C tungstate-binding protein%3B~IMG reference gene:2505283606 gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0317 Thein_0318 Thein_0318 Thein_0318 340096 340785 + binding-protein-dependent transport systems inner membrane component COGs: COG4662 ABC-type tungstate transport system periplasmic component~InterPro IPR000515~KEGG: dat:HRM2_17610 predicted ABC-type molybdate/tungstate transporter%2C permease component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Predicted ABC-type molybdate/tungstate transporter%2C permease component%3B~IMG reference gene:2505283607~PFAM: Binding-protein-dependent transport system inner membrane component gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0318 Thein_0319 Thein_0319 Thein_0319 340779 341786 + ABC transporter related protein COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: dat:HRM2_17600 HTH-type transcriptional regulator~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: HTH-type transcriptional regulator%3B~IMG reference gene:2505283608~PFAM: ABC transporter gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0319 Thein_0320 Thein_0320 Thein_0320 341783 342517 - hypothetical protein KEGG: dvm:DvMF_2105 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283609 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0320 Thein_0321 Thein_0321 Thein_0321 342537 342980 - hypothetical protein KEGG: tye:THEYE_A0759 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283610 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0321 Thein_0322 Thein_0322 Thein_0322 343127 344515 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR001789:IPR002078:IPR002197:IPR020441:IPR 003593~KEGG: tye:THEYE_A0743 response regulator HsfA~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Response regulator HsfA%3B~IMG reference gene:2505283611~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0322 Thein_0323 Thein_0323 Thein_0323 344506 345918 - integral membrane sensor signal transduction histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467~KEGG: tye:THEYE_A0744 sensory transduction protein kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Sensory Transduction Protein Kinase%3B~IMG reference gene:2505283612~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0323 Thein_0324 Thein_0324 Thein_0324 346287 347527 - pseudogene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0324 Thein_0325 Thein_0325 Thein_0325 347893 348555 + hypothetical protein KEGG: rci:RCIX1427 universal stress protein A~SPTR: Universal stress protein A%3B~IMG reference gene:2505283614 gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0325 Thein_0326 Thein_0326 Thein_0326 348597 349712 + protein of unknown function DUF81 COGs: COG0730 permease~InterPro IPR002781~KEGG: dae:Dtox_1011 protein of unknown function DUF81~PFAM: protein of unknown function DUF81~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283615~PFAM: Sulfite exporter TauE/SafE gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0326 Thein_0327 Thein_0327 Thein_0327 349931 350356 + UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006016:IPR006015~KEGG: mif:Metin_0312 UspA domain protein~PFAM: UspA domain-containing protein~SPTR: Universal stress protein%3B~manually curated~IMG reference gene:2505283616~PFAM: Universal stress protein family gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0327 Thein_0328 Thein_0328 Thein_0328 350538 351518 + protein of unknown function DUF81 InterPro IPR002781~KEGG: tye:THEYE_A0738 hypothetical protein~PFAM: protein of unknown function DUF81~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283617~PFAM: Sulfite exporter TauE/SafE gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0328 Thein_0329 Thein_0329 Thein_0329 351534 351965 + hypothetical protein InterPro IPR020327~KEGG: afu:AF1562 hypothetical protein~SPTR: Uncharacterized protein AF_1562%3B~IMG reference gene:2505283618 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0329 Thein_0330 Thein_0330 Thein_0330 352086 353861 + Citrate transporter COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease~InterPro IPR004680:IPR000802~KEGG: tye:THEYE_A0731 arsenical pump membrane protein~PFAM: Citrate transporter~SPTR: Arsenical pump membrane protein%3B~IMG reference gene:2505283619~PFAM: Citrate transporter gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0330 Thein_0331 Thein_0331 Thein_0331 353872 354825 + UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006016:IPR006015~KEGG: tye:THEYE_A1621 universal stress protein family~PFAM: UspA domain-containing protein~SPTR: Universal stress protein family%3B~IMG reference gene:2505283620~PFAM: Universal stress protein family gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0331 Thein_0332 Thein_0332 Thein_0332 355391 357136 + Citrate transporter COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease~InterPro IPR004680:IPR000802~KEGG: tye:THEYE_A0731 arsenical pump membrane protein~PFAM: Citrate transporter~SPTR: Arsenical pump membrane protein%3B~IMG reference gene:2505283621~PFAM: Citrate transporter gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0332 Thein_0333 Thein_0333 Thein_0333 357146 358096 + UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006016:IPR006015~KEGG: tye:THEYE_A1621 universal stress protein family~PFAM: UspA domain-containing protein~SPTR: Universal stress protein family%3B~IMG reference gene:2505283622~PFAM: Universal stress protein family gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0333 Thein_0334 Thein_0334 Thein_0334 358369 359292 + Inorganic diphosphatase COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase~InterPro IPR001667:IPR004097~KEGG: drt:Dret_1594 putative manganese-dependent inorganic pyrophosphatase~PFAM: DHHA2 domain protein%3B phosphoesterase RecJ domain protein~PRIAM: Inorganic diphosphatase~SPTR: Inorganic diphosphatase%3B~IMG reference gene:2505283623~PFAM: DHH family%3B DHHA2 domain gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0334 Thein_0335 Thein_0335 Thein_0335 359331 359504 - aminopeptidase N KEGG: pmm:PMM1002 aminopeptidase N~SPTR: Probable aminopeptidase N%3B~IMG reference gene:2505283624 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0335 Thein_0336 Thein_0336 Thein_0336 359638 359772 - hypothetical protein IMG reference gene:2505283625 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0336 Thein_0337 Thein_0337 Thein_0337 359782 360294 - hypothetical protein KEGG: sfu:Sfum_2085 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283626 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0337 Thein_0338 Thein_0338 Thein_0338 360299 360748 - hypothetical protein KEGG: pmy:Pmen_2369 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283627~PFAM: Phosphate-starvation-inducible E gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0338 Thein_0339 Thein_0339 Thein_0339 360869 361330 - paREP15%2C putative coiled-coil protein KEGG: fpl:Ferp_1555 paREP15%2C putative coiled-coil protein~SPTR: Putative coiled-coil protein%3B~IMG reference gene:2505283628 gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0339 Thein_0340 Thein_0340 Thein_0340 361725 363419 + DNA mismatch repair protein MutL COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase)~InterProIPR014763:IPR003594:IPR013507:IPR014790:IPR 020667:IPR014762~KEGG: sat:SYN_02889 DNA mismatch repair protein MutL~PFAM: MutL dimerisation%3B DNA mismatch repair protein domain protein%3B ATP-binding region ATPase domain protein~SPTR: DNA mismatch repair protein mutL%3B~TIGRFAM: DNA mismatch repair protein MutL~IMG reference gene:2505283629~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B MutL C terminal dimerisation domain%3B DNA mismatch repair protein%2C C-terminal domain~TIGRFAM: DNA mismatch repair protein MutL gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0340 Thein_0341 Thein_0341 Thein_0341 363385 364344 + tRNA delta(2)-isopentenylpyrophosphate transferase COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase~InterPro IPR018022:IPR002627~KEGG: gsu:GSU2000 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase~PRIAM: tRNA isopentenyltransferase~SPTR: tRNA delta(2)-isopentenylpyrophosphate transferase%3B~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~IMG reference gene:2505283630~PFAM: IPP transferase~TIGRFAM: tRNA dimethylallyltransferase gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0341 Thein_0342 Thein_0342 Thein_0342 364324 365172 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: tdn:Suden_1570 diguanylate cyclase~PFAM: GGDEF domain containing protein~SMART: GGDEF domain containing protein~SPTR: Diguanylate cyclase (GGDEF domain)%3B~TIGRFAM: diguanylate cyclase~IMG reference gene:2505283631~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0342 Thein_0343 Thein_0343 Thein_0343 365667 366512 - protein of unknown function DUF89 COGs: COG1578 conserved hypothetical protein~InterPro IPR002791:IPR014444~KEGG: adg:Adeg_0546 protein of unknown function DUF89~PFAM: protein of unknown function DUF89~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283632~PFAM: Protein of unknown function DUF89 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0343 Thein_0344 Thein_0344 Thein_0344 366767 367378 + HNH endonuclease COGs: COG1403 Restriction endonuclease~InterPro IPR002711:IPR003615~KEGG: ade:Adeh_1905 HNH endonuclease~PFAM: HNH endonuclease~SMART: HNH nuclease~SPTR: HNH endonuclease%3B~IMG reference gene:2505283633~PFAM: HNH endonuclease gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0344 Thein_0345 Thein_0345 Thein_0345 367690 368151 - CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: dvm:DvMF_0284 CheW protein~PFAM: CheW domain protein~SMART: CheW domain protein~SPTR: CheW protein%3B~IMG reference gene:2505283634~PFAM: CheW-like domain gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0345 Thein_0346 Thein_0346 Thein_0346 368132 369058 - heat shock protein DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR001623:IPR002939:IPR003095~KEGG: tgr:Tgr7_0973 chaperone protein DnaJ~PFAM: heat shock protein DnaJ domain protein%3B chaperone DnaJ domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: Chaperone protein dnaJ%3B~IMG reference gene:2505283635~PFAM: DnaJ C terminal region%3B DnaJ central domain (4 repeats)%3B DnaJ domain gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0346 Thein_0347 Thein_0347 Thein_0347 369058 371760 - CheA signal transduction histidine kinase COGs: COG0643 Chemotaxis protein histidine kinase and related kinase~InterProIPR008207:IPR004105:IPR003594:IPR002545:IPR 001789:IPR004358:IPR005467~KEGG: dps:DP2642 Che family two-component system sensory/regulatory protein~PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B Signal transducing histidine kinase homodimeric%3B Hpt domain protein%3B CheW domain protein~SMART: response regulator receiver%3B CheW domain protein%3B ATP-binding region ATPase domain protein%3B Hpt domain protein~SPTR: Two-component system sensory/regulatory protein-like (Che family protein)%3B~IMG reference gene:2505283636~PFAM: CheW-like domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B Signal transducing histidine kinase%2C homodimeric domain%3B Hpt domain gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0347 Thein_0348 Thein_0348 Thein_0348 371819 372637 - MCP methyltransferase%2C CheR-type COGs: COG1352 Methylase of chemotaxis methyl-accepting protein~InterPro IPR000780~KEGG: psl:Psta_3345 MCP methyltransferase%2C CheR-type~PFAM: MCP methyltransferase CheR-type~PRIAM: Protein-glutamate O-methyltransferase~SMART: MCP methyltransferase CheR-type~SPTR: MCP methyltransferase%2C CheR-type%3B~IMG reference gene:2505283637~PFAM: CheR methyltransferase%2C SAM binding domain%3B CheR methyltransferase%2C all-alpha domain gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0348 Thein_0349 Thein_0349 Thein_0349 372634 373719 - response regulator receiver modulated CheB methylesterase COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain~InterPro IPR001789:IPR000673:IPR008248~KEGG: ami:Amir_2321 response regulator receiver modulated CheB methylesterase~PFAM: CheB methylesterase%3B response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver modulated CheB methylesterase%3B~IMG reference gene:2505283638~PFAM: CheB methylesterase%3B Response regulator receiver domain gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0349 Thein_0350 Thein_0350 Thein_0350 373716 374087 - response regulator receiver protein COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789~KEGG: jde:Jden_2000 response regulator receiver protein~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505283639~PFAM: Response regulator receiver domain gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0350 Thein_0351 Thein_0351 Thein_0351 374246 374620 + holo-acyl-carrier-protein synthase COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)~InterPro IPR002582:IPR004568:IPR008278~KEGG: aba:Acid345_4518 phosphopantethiene-protein transferase domain-contain protein~PFAM: 4'-phosphopantetheinyl transferase~SPTR: Holo-[acyl-carrier-protein] synthase%3B~TIGRFAM: holo-acyl-carrier-protein synthase~IMG reference gene:2505283640~PFAM: 4'-phosphopantetheinyl transferase superfamily~TIGRFAM: phosphopantethiene--protein transferase domain%3B holo-[acyl-carrier-protein] synthase gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0351 Thein_0352 Thein_0352 Thein_0352 374617 375672 - DRTGG domain protein COGs: COG0857 BioD-like N-terminal domain of phosphotransacetylase~InterPro IPR010766:IPR000917~KEGG: dsa:Desal_3044 DRTGG domain protein~PFAM: DRTGG domain protein~SPTR: DRTGG domain protein%3B~IMG reference gene:2505283641~PFAM: DRTGG domain gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0352 Thein_0353 Thein_0353 Thein_0353 375669 377762 - CoA-binding domain protein COGs: COG1042 Acyl-CoA synthetase (NDP forming)~InterPro IPR003781:IPR013650:IPR011761~KEGG: cag:Cagg_3834 acetyl coenzyme A synthetase (ADP forming)%2C alpha domain protein~PFAM: CoA-binding domain protein%3B ATP-grasp domain protein~SPTR: Acetyl coenzyme A synthetase (ADP forming)%2C alpha domain protein%3B~IMG reference gene:2505283642~PFAM: CoA binding domain%3B ATP-grasp domain~TIGRFAM: acetyl coenzyme A synthetase (ADP forming)%2C alpha domain gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0353 Thein_0354 Thein_0354 Thein_0354 377824 378060 - FeoA family protein COGs: COG1918 Fe2+ transport system protein A~InterPro IPR007167~KEGG: pru:PRU_0867 ferrous iron transport protein B~PFAM: FeoA family protein~SPTR: Ferrous iron transport protein B%3B~IMG reference gene:2505283643~PFAM: FeoA domain gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0354 Thein_0355 Thein_0355 Thein_0355 378070 378735 - ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481~KEGG: pmx:PERMA_1658 transcriptional regulator~PFAM: ferric-uptake regulator~SPTR: Transcriptional regulator%3B~IMG reference gene:2505283644~PFAM: Ferric uptake regulator family gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0355 Thein_0356 Thein_0356 Thein_0356 378915 379832 + protein of unknown function DUF1555 InterPro IPR013424:IPR011449~KEGG: dak:DaAHT2_1785 protein of unknown function DUF1555~PFAM: protein of unknown function DUF1555~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283645~PFAM: PEP-CTERM motif~TIGRFAM: PEP-CTERM putative exosortase interaction domain gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0356 Thein_0357 Thein_0357 Thein_0357 380098 381051 + transposase IS4 family protein COGs: COG3039 Transposase and inactivated derivatives IS5 family~InterPro IPR002559~KEGG: cyn:Cyan7425_5319 transposase IS4 family protein~PFAM: transposase IS4 family protein~SPTR: Transposase%3B~IMG reference gene:2505283646~PFAM: Transposase DDE domain%3B Transposase domain (DUF772) gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0357 Thein_0358 Thein_0358 Thein_0358 381163 381486 + pseudogene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0358 Thein_0359 Thein_0359 Thein_0359 381614 384889 + ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent COGs: COG1372 Intein/homing endonuclease~InterProIPR013344:IPR006141:IPR013509:IPR000788:IPR 006142:IPR004042:IPR001202:IPR003587:IPR003586~KEGG: dhd:Dhaf_0267 ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent~PFAM: ribonucleotide reductase large subunit%3B Ribonucleotide reductase large subunit domain protein~SMART: Hedgehog/intein hint domain protein~SPTR: Ribonucleoside-diphosphate reductase%3B~TIGRFAM: ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent~IMG reference gene:2505283648~PFAM: Ribonucleotide reductase%2C all-alpha domain%3B Ribonucleotide reductase%2C barrel domain~TIGRFAM: intein N-terminal splicing region%3B ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent%3B intein C-terminal splicing region gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0359 Thein_0360 Thein_0360 Thein_0360 384886 385560 - 3-dehydroquinate dehydratase%2C type I COGs: COG0710 3-dehydroquinate dehydratase~InterPro IPR001381~KEGG: dps:DP3013 3-dehydroquinate dehydratase~PFAM: dehydroquinase class I~PRIAM: 3-dehydroquinate dehydratase~SPTR: 3-dehydroquinate dehydratase%3B~TIGRFAM: 3-dehydroquinate dehydratase%2C type I~IMG reference gene:2505283649~PFAM: Type I 3-dehydroquinase~TIGRFAM: 3-dehydroquinate dehydratase%2C type I gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0360 Thein_0361 Thein_0361 Thein_0361 385560 386165 - Phosphoribosylaminoimidazolecarboxamide formyltransferase COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)~InterPro IPR011607:IPR013982~KEGG: dak:DaAHT2_0500 IMP cyclohydrolase~PFAM: MGS domain protein%3B AICARFT/IMPCHase bienzyme formylation region~PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase~SPTR: IMP cyclohydrolase%3B~IMG reference gene:2505283650~PFAM: AICARFT/IMPCHase bienzyme%3B MGS-like domain gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0361 Thein_0362 Thein_0362 Thein_0362 386175 387359 - Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR007197:IPR017200:IPR006638~KEGG: sfu:Sfum_3056 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505283651~PFAM: Radical SAM superfamily~TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ1%3B radical SAM additional 4Fe4S-binding domain gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0362 Thein_0363 Thein_0363 Thein_0363 387361 387726 - response regulator receiver InterPro IPR001789~KEGG: gsu:GSU0877 response regulator~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver modulated PilZ sensor protein%3B~IMG reference gene:2505283652~PFAM: Response regulator receiver domain gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0363 Thein_0364 Thein_0364 Thein_0364 387723 389378 - ATPase AAA-2 domain protein COGs: COG1219 ATP-dependent protease Clp ATPase subunit~InterPro IPR013093:IPR003593~KEGG: sfu:Sfum_3055 ATPase~PFAM: ATPase AAA-2 domain protein~SMART: AAA ATPase~SPTR: ATPase AAA-2 domain protein%3B~IMG reference gene:2505283653~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein~TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0364 Thein_0365 Thein_0365 Thein_0365 389481 391307 - primosomal protein N' COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase~InterPro IPR005259:IPR014021~KEGG: dol:Dole_0025 primosomal protein N'~SPTR: Primosomal protein N'%3B~TIGRFAM: primosomal protein N'~IMG reference gene:2505283654~TIGRFAM: primosomal protein N' gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0365 Thein_0366 Thein_0366 Thein_0366 391408 392175 + hydrolase%2C TatD family COGs: COG0084 Mg-dependent DNase~InterPro IPR015991:IPR001130:IPR012278:IPR018228~KEGG: sat:SYN_03204 sec-independent protein translocase protein~PFAM: TatD-related deoxyribonuclease~SPTR: Sec-independent protein translocase protein%3B~TIGRFAM: hydrolase%2C TatD family~IMG reference gene:2505283655~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0366 Thein_0367 Thein_0367 Thein_0367 392148 392750 + maf protein COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation~InterPro IPR003697~KEGG: dsa:Desal_2463 maf protein~PFAM: Maf family protein~SPTR: Maf protein%3B~TIGRFAM: maf protein~IMG reference gene:2505283656~PFAM: Maf-like protein~TIGRFAM: MAF protein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0367 Thein_0368 Thein_0368 Thein_0368 392740 393141 + protein TolR COGs: COG0848 Biopolymer transport protein~InterPro IPR014168:IPR003400~KEGG: tye:THEYE_A0958 TolR protein~PFAM: Biopolymer transport protein ExbD/TolR~SPTR: TolR protein%3B~TIGRFAM: protein TolR~IMG reference gene:2505283657~PFAM: Biopolymer transport protein ExbD/TolR~TIGRFAM: TolR protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0368 Thein_0369 Thein_0369 Thein_0369 393138 393890 + TonB family protein InterPro IPR006260~KEGG: abo:ABO_0757 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: TonB family protein~IMG reference gene:2505283658~PFAM: Gram-negative bacterial tonB protein~TIGRFAM: TonB family C-terminal domain gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0369 Thein_0370 Thein_0370 Thein_0370 393903 395135 + TolB domain-containing protein COGs: COG0823 Periplasmic component of the Tol biopolymer transport system~InterPro IPR011659:IPR014167~KEGG: sfu:Sfum_0755 TolB domain-containing protein~SPTR: TolB%2C N-terminal domain protein%3B~IMG reference gene:2505283659~PFAM: WD40-like Beta Propeller Repeat%3B TolB amino-terminal domain~TIGRFAM: tol-pal system beta propeller repeat protein TolB gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0370 Thein_0371 Thein_0371 Thein_0371 395432 396598 + acyl-CoA dehydrogenase domain-containing protein COGs: COG1960 Acyl-CoA dehydrogenase~InterPro IPR006092:IPR006091:IPR006090:IPR006089~KEGG: tye:THEYE_A0567 acyl-CoA dehydrogenase%2C short-chain specific~PFAM: acyl-CoA dehydrogenase domain-containing protein~SPTR: Acyl-CoA dehydrogenase%2C short-chain specific%3B~IMG reference gene:2505283660~PFAM: Acyl-CoA dehydrogenase%2C C-terminal domain%3B Acyl-CoA dehydrogenase%2C middle domain%3B Acyl-CoA dehydrogenase%2C N-terminal domain gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0371 Thein_0372 Thein_0372 Thein_0372 396598 397380 + Electron transfer flavoprotein alpha/beta-subunit COGs: COG2086 Electron transfer flavoprotein beta subunit~InterPro IPR014730:IPR012255~KEGG: tye:THEYE_A1636 electron transfer flavoprotein beta-subunit~PFAM: Electron transfer flavoprotein alpha/beta-subunit~SPTR: Electron transfer flavoprotein beta-subunit%3B~IMG reference gene:2505283661~PFAM: Electron transfer flavoprotein domain gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0372 Thein_0373 Thein_0373 Thein_0373 397380 398393 + Electron transfer flavoprotein alpha subunit COGs: COG2025 Electron transfer flavoprotein alpha subunit~InterPro IPR014730:IPR014731:IPR001308~KEGG: nth:Nther_1879 electron transfer flavoprotein alpha/beta-subunit~PFAM: Electron transfer flavoprotein alpha subunit %3B Electron transfer flavoprotein alpha/beta-subunit~SPTR: Electron transfer flavoprotein alpha/beta-subunit%3B~IMG reference gene:2505283662~PFAM: Electron transfer flavoprotein domain%3B Electron transfer flavoprotein FAD-binding domain gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0373 Thein_0374 Thein_0374 Thein_0374 398386 399528 + 2-nitropropane dioxygenase NPD COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase~InterPro IPR004136~KEGG: dba:Dbac_2248 2-nitropropane dioxygenase NPD~PFAM: 2-nitropropane dioxygenase NPD~SPTR: 2-nitropropane dioxygenase NPD%3B~IMG reference gene:2505283663~PFAM: 2-nitropropane dioxygenase gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0374 Thein_0375 Thein_0375 Thein_0375 399531 400274 + 3-oxoacyl-(acyl-carrier-protein) reductase COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterProIPR011283:IPR011284:IPR002198:IPR002347:IPR 020904~KEGG: vpr:Vpar_0699 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: short-chain dehydrogenase/reductase SDR~SPTR: Putative uncharacterized protein%3B~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase%3B acetoacetyl-CoA reductase~IMG reference gene:2505283664~PFAM: short chain dehydrogenase~TIGRFAM: acetoacetyl-CoA reductase%3B 3-oxoacyl-(acyl-carrier-protein) reductase gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0375 Thein_0376 Thein_0376 Thein_0376 400360 400581 + Uncharacterized protein family UPF0150 InterPro IPR005357~KEGG: nhl:Nhal_2504 protein of unknown function UPF0150~PFAM: Uncharacterised protein family UPF0150~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283665~PFAM: Uncharacterised protein family (UPF0150) gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0376 Thein_0377 Thein_0377 Thein_0377 400581 400817 + YcfA family protein InterPro IPR012933~KEGG: nhl:Nhal_2505 hypothetical protein~PFAM: YcfA family protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283666~PFAM: YcfA-like protein gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0377 Thein_0378 Thein_0378 Thein_0378 400845 401084 + acyl carrier protein COGs: COG0236 Acyl carrier protein~InterPro IPR003231:IPR006163:IPR009081:IPR006162~KEGG: dal:Dalk_3308 acyl carrier protein~PFAM: phosphopantetheine-binding~SPTR: Acyl carrier protein%3B~TIGRFAM: acyl carrier protein~IMG reference gene:2505283667~PFAM: Phosphopantetheine attachment site~TIGRFAM: acyl carrier protein gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0378 Thein_0379 Thein_0379 Thein_0379 401084 402331 + 3-oxoacyl-(acyl-carrier-protein) synthase 2 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase~InterPro IPR017568:IPR014030:IPR014031:IPR018201~KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein synthase II~PFAM: Beta-ketoacyl synthase~SPTR: Beta-ketoacyl-acyl carrier protein synthase II%3B~TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~IMG reference gene:2505283668~PFAM: Beta-ketoacyl synthase%2C N-terminal domain%3B Beta-ketoacyl synthase%2C C-terminal domain~TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0379 Thein_0380 Thein_0380 Thein_0380 402334 402774 + sugar-phosphate isomerase%2C RpiB/LacA/LacB family COGs: COG0698 Ribose 5-phosphate isomerase RpiB~InterPro IPR004785:IPR003500~KEGG: tal:Thal_0562 ribose 5-phosphate isomerase B~PFAM: Ribose/galactose isomerase~PRIAM: Galactose-6-phosphate isomerase~SPTR: Ribose 5-phosphate isomerase B%3B~TIGRFAM: sugar-phosphate isomerase%2C RpiB/LacA/LacB family%3B ribose 5-phosphate isomerase B~IMG reference gene:2505283669~PFAM: Ribose/Galactose Isomerase~TIGRFAM: ribose 5-phosphate isomerase B%3B sugar-phosphate isomerases%2C RpiB/LacA/LacB family gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0380 Thein_0381 Thein_0381 Thein_0381 402779 404038 + Glycine hydroxymethyltransferase COGs: COG0112 Glycine/serine hydroxymethyltransferase~InterPro IPR001085:IPR019798~KEGG: ddf:DEFDS_0485 glycine hydroxymethyltransferase~PFAM: glycine hydroxymethyltransferase~PRIAM: Glycine hydroxymethyltransferase~SPTR: Serine hydroxymethyltransferase%3B~IMG reference gene:2505283670~PFAM: Serine hydroxymethyltransferase gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0381 Thein_0382 Thein_0382 Thein_0382 404035 405027 + CMP/dCMP deaminase zinc-binding protein COGs: COG2131 Deoxycytidylate deaminase~InterPro IPR002125:IPR016192~KEGG: cyc:PCC7424_0712 CMP/dCMP deaminase zinc-binding~PFAM: CMP/dCMP deaminase zinc-binding~SPTR: CMP/dCMP deaminase zinc-binding%3B~IMG reference gene:2505283671~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0382 Thein_0383 Thein_0383 Thein_0383 405138 405887 - ABC transporter related protein COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003439:IPR017871:IPR003593~KEGG: drt:Dret_1343 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related protein%3B~IMG reference gene:2505283672~PFAM: ABC transporter gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0383 Thein_0384 Thein_0384 Thein_0384 405880 406656 - polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: drt:Dret_1344 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Polar amino acid ABC transporter%2C inner membrane subunit%3B~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~IMG reference gene:2505283673~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0384 Thein_0385 Thein_0385 Thein_0385 406716 407462 - extracellular solute-binding protein family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638:IPR001320~KEGG: dal:Dalk_1255 extracellular solute-binding protein family 3~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3%3B ionotropic glutamate receptor~SPTR: Extracellular solute-binding protein family 3%3B~IMG reference gene:2505283674~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0385 Thein_0386 Thein_0386 Thein_0386 407809 408528 + aspartate racemase COGs: COG1794 Aspartate racemase~InterPro IPR004380:IPR015942:IPR018187~KEGG: sdn:Sden_1375 aspartate racemase~PFAM: Asp/Glu/hydantoin racemase~SPTR: Aspartate racemase%3B~TIGRFAM: aspartate racemase~IMG reference gene:2505283675~PFAM: Asp/Glu/Hydantoin racemase~TIGRFAM: aspartate racemase gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0386 Thein_0387 Thein_0387 Thein_0387 408519 409412 + beta-lactamase domain-containing protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: tle:Tlet_1564 beta-lactamase domain-containing protein~SPTR: Beta-lactamase domain protein%3B~IMG reference gene:2505283676~PFAM: Metallo-beta-lactamase superfamily gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0387 Thein_0388 Thein_0388 Thein_0388 409664 410275 + hypothetical protein KEGG: saf:SULAZ_1225 cytochrome c family protein~SPTR: Cytochrome c family protein%3B~IMG reference gene:2505283677~PFAM: Protein of unknown function (DUF3365) gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0388 Thein_0389 Thein_0389 Thein_0389 410478 411236 - carbonic anhydrase COGs: COG0288 Carbonic anhydrase~InterPro IPR001765~KEGG: swo:Swol_2452 carbonic anhydrase-like protein~PFAM: carbonic anhydrase~SPTR: Carbonic anhydrase%3B~IMG reference gene:2505283678~PFAM: Carbonic anhydrase gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0389 Thein_0390 Thein_0390 Thein_0390 411427 413016 - hypothetical protein InterPro IPR011031~KEGG: dak:DaAHT2_2113 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283679~PFAM: Doubled CXXCH motif (Paired_CXXCH_1)~TIGRFAM: doubled CXXCH domain gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0390 Thein_0391 Thein_0391 Thein_0391 413013 415616 - cytochrome C family protein InterPro IPR010177:IPR011031~KEGG: ddf:DEFDS_0746 multiheme C-type cytochrome~SPTR: Multiheme c-type cytochrome%3B~TIGRFAM: cytochrome C family protein~IMG reference gene:2505283680~PFAM: Doubled CXXCH motif (Paired_CXXCH_1)~TIGRFAM: doubled CXXCH domain gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0391 Thein_0392 Thein_0392 Thein_0392 415617 416582 - NHL repeat containing protein InterPro IPR001258:IPR013017~KEGG: dak:DaAHT2_2116 NHL repeat containing protein~PFAM: NHL repeat containing protein~SPTR: NHL repeat containing protein%3B~IMG reference gene:2505283681~PFAM: NHL repeat gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0392 Thein_0393 Thein_0393 Thein_0393 416593 418176 - hypothetical protein COGs: COG2864 Cytochrome b subunit of formate dehydrogenase~InterPro IPR017970~KEGG: dak:DaAHT2_2115 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283682~PFAM: Cytochrome b(N-terminal)/b6/petB~TIGRFAM: formate dehydrogenase%2C gamma subunit gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0393 Thein_0394 Thein_0394 Thein_0394 418209 419351 - hypothetical protein InterPro IPR011031~KEGG: ddf:DEFDS_0742 multiheme C-type cytochrome~SPTR: Multiheme c-type cytochrome%3B~IMG reference gene:2505283683 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0394 Thein_0395 Thein_0395 Thein_0395 419699 420844 - histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594:IPR004358:IPR005467~KEGG: drt:Dret_0468 PAS/PAC sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Sensory box histidine kinase PhoR%3B~IMG reference gene:2505283684~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0395 Thein_0396 Thein_0396 Thein_0396 420822 421496 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: gme:Gmet_2693 two component transcriptional regulator~PFAM: response regulator receiver%3B transcriptional regulator domain-containing protein~SMART: response regulator receiver~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2505283685~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0396 Thein_0397 Thein_0397 Thein_0397 421509 422156 + riboflavin synthase%2C alpha subunit COGs: COG0307 Riboflavin synthase alpha chain~InterPro IPR001783~KEGG: dol:Dole_2078 riboflavin synthase%2C alpha subunit~PFAM: Lumazine-binding protein~PRIAM: Riboflavin synthase~SPTR: Riboflavin synthase%2C alpha subunit%3B~TIGRFAM: riboflavin synthase%2C alpha subunit~IMG reference gene:2505283686~PFAM: Lumazine binding domain~TIGRFAM: riboflavin synthase%2C alpha subunit gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0397 Thein_0398 Thein_0398 Thein_0398 422149 422676 + chromosome segregation and condensation protein%2C ScpB COGs: COG1386 transcriptional regulator protein containing the HTH domain~InterPro IPR005234~KEGG: geo:Geob_3014 chromosome segregation and condensation protein%2C ScpB~PFAM: chromosome segregation and condensation protein ScpB~SPTR: Chromosome segregation and condensation protein%2C ScpB%3B~TIGRFAM: segregation and condensation protein B~IMG reference gene:2505283687~PFAM: Putative transcriptional regulators (Ypuh-like)~TIGRFAM: segregation and condensation protein B gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0398 Thein_0399 Thein_0399 Thein_0399 422669 423094 + hypothetical protein KEGG: dak:DaAHT2_0853 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283688 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0399 Thein_0400 Thein_0400 Thein_0400 423104 423478 + hypothetical protein KEGG: dak:DaAHT2_1271 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283689 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0400 Thein_0401 Thein_0401 Thein_0401 423722 423850 - hypothetical protein SPTR: Peptidase M16 domain protein%3B~IMG reference gene:2505283690 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0401 Thein_0402 Thein_0402 Thein_0402 423860 425251 - threonine synthase COGs: COG0498 Threonine synthase~InterPro IPR004450:IPR001926~KEGG: gme:Gmet_1631 threonine synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~PRIAM: Threonine synthase~SPTR: L-threonine synthase%3B~TIGRFAM: threonine synthase~IMG reference gene:2505283691~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: threonine synthase gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0402 Thein_0403 Thein_0403 Thein_0403 425441 425680 - Dissimilatory sulfite reductase D InterPro IPR014793~KEGG: dat:HRM2_42380 DsrD~PFAM: Dissimilatory sulfite reductase D~SPTR: DsrD%3B~IMG reference gene:2505283692~PFAM: Dissimilatory sulfite reductase D (DsrD) gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0403 Thein_0404 Thein_0404 Thein_0404 425704 426936 - sulfite reductase%2C dissimilatory-type beta subunit COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits~InterProIPR011808:IPR005117:IPR006067:IPR017896:IPR 017900~KEGG: adg:Adeg_2093 sulfite reductase%2C dissimilatory-type beta subunit~PFAM: nitrite and sulphite reductase 4Fe-4S region%3B nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein~PRIAM: Hydrogensulfite reductase~SPTR: Sulfite reductase%2C dissimilatory-type beta subunit%3B~TIGRFAM: sulfite reductase%2C dissimilatory-type beta subunit~IMG reference gene:2505283693~PFAM: Nitrite and sulphite reductase 4Fe-4S domain%3B Nitrite/Sulfite reductase ferredoxin-like half domain~TIGRFAM: sulfite reductase%2C dissimilatory-type beta subunit gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0404 Thein_0405 Thein_0405 Thein_0405 427005 428294 - sulfite reductase%2C dissimilatory-type alpha subunit COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits~InterPro IPR011806:IPR006067:IPR017896~KEGG: mta:Moth_1601 sulfite reductase%2C dissimilatory-type alpha subunit~PFAM: nitrite and sulphite reductase 4Fe-4S region~PRIAM: Hydrogensulfite reductase~SPTR: Dissimilatory sulfite reductase alpha subunit%3B~TIGRFAM: sulfite reductase%2C dissimilatory-type alpha subunit~IMG reference gene:2505283694~PFAM: Nitrite and sulphite reductase 4Fe-4S domain~TIGRFAM: sulfite reductase%2C dissimilatory-type alpha subunit gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0405 Thein_0406 Thein_0406 Thein_0406 428473 429321 - putative signal transduction protein COGs: COG1639 signal transduction protein~InterPro IPR006675:IPR013976~KEGG: dar:Daro_1978 HDIG~PFAM: Metal-dependent hydrolase HDOD~SPTR: HDIG%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505283695~PFAM: HDOD domain~TIGRFAM: uncharacterized domain HDIG gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0406 Thein_0407 Thein_0407 Thein_0407 429415 429807 + Roadblock/LC7 family protein InterPro IPR004942~KEGG: sfu:Sfum_0317 roadblock/LC7 family protein~PFAM: Roadblock/LC7 family protein~SPTR: Roadblock/LC7 family protein%3B~IMG reference gene:2505283696~PFAM: Roadblock/LC7 domain gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0407 Thein_0408 Thein_0408 Thein_0408 429817 430461 + gliding motility protein (MglA) InterPro IPR001806~KEGG: sfu:Sfum_0318 gliding motility protein (MglA)~SPTR: Gliding motility protein (MglA)%3B~IMG reference gene:2505283697~PFAM: Ras family gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0408 Thein_0409 Thein_0409 Thein_0409 430458 431762 + hypothetical protein KEGG: pkn:PKH_130600 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283698 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0409 Thein_0410 Thein_0410 Thein_0410 431763 434069 + type II secretion system protein E COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB~InterProIPR001440:IPR007831:IPR001482:IPR019734:IPR 013026:IPR003593~KEGG: sat:SYN_01404 general secretion pathway protein E~PFAM: type II secretion system protein E%3B General secretory system II protein E domain protein%3B Tetratricopeptide TPR_1 repeat-containing protein~SMART: AAA ATPase%3B Tetratricopeptide repeat~SPTR: General secretion pathway protein E%3B~IMG reference gene:2505283699~PFAM: Type II/IV secretion system protein%3B GSPII_E N-terminal domain gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0410 Thein_0411 Thein_0411 Thein_0411 434187 436121 + multi-sensor signal transduction histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR000014:IPR013767:IPR003661:IPR003594:IPR 004358:IPR005467:IPR000700~KEGG: tye:THEYE_A0125 sensor histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS fold domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS domain containing protein~SPTR: Sensor histidine kinase%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505283700~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B Protein of unknown function (DUF3365)%3B PAS fold~TIGRFAM: PAS domain S-box gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0411 Thein_0412 Thein_0412 Thein_0412 436096 437502 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR001789:IPR002078:IPR002197:IPR020441:IPR 003593~KEGG: sfu:Sfum_2764 two component%2C sigma54 specific%2C fis family transcriptional regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505283701~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0412 Thein_0413 Thein_0413 Thein_0413 437728 437931 + hypothetical protein KEGG: drt:Dret_0968 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283702 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0413 Thein_0414 Thein_0414 Thein_0414 437934 438188 + hypothetical protein KEGG: drt:Dret_0967 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283703 gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0414 Thein_0415 Thein_0415 Thein_0415 438190 439806 + Uncharacterized protein family UPF0324 InterPro IPR018383~KEGG: drt:Dret_0966 uncharacterized protein family UPF0324~PFAM: Uncharacterised protein family UPF0324~SPTR: Uncharacterized protein family UPF0324%3B~IMG reference gene:2505283704~PFAM: Conserved hypothetical protein 698 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0415 Thein_0416 Thein_0416 Thein_0416 439916 440185 + hypothetical protein KEGG: nwa:Nwat_2662 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283705 gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0416 Thein_0417 Thein_0417 Thein_0417 440182 440943 - beta-lactamase domain-containing protein COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III~KEGG: dol:Dole_3235 beta-lactamase domain-containing protein~SPTR: Beta-lactamase domain protein%3B~IMG reference gene:2505283706~PFAM: Metallo-beta-lactamase superfamily gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0417 Thein_0418 Thein_0418 Thein_0418 440940 442472 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR019734:IPR013026~KEGG: dba:Dbac_3412 diguanylate cyclase with TPR repeats~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SPTR: Diguanylate cyclase with TPR repeats%3B~IMG reference gene:2505283707~PFAM: Tetratricopeptide repeat gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0418 Thein_0419 Thein_0419 Thein_0419 442472 443863 - L-seryl-tRNA selenium transferase COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]~InterPro IPR004534:IPR018319~KEGG: dak:DaAHT2_0215 L-seryl-tRNA selenium transferase~PFAM: Pyridoxal phosphate-dependent transferase~PRIAM: L-seryl-tRNA(Sec) selenium transferase~SPTR: L-seryl-tRNA selenium transferase%3B~TIGRFAM: L-seryl-tRNA selenium transferase~IMG reference gene:2505283708~PFAM: L-seryl-tRNA selenium transferase~TIGRFAM: seryl-tRNA(sec) selenium transferase gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0419 Thein_0420 Thein_0420 Thein_0420 443996 444853 + hypothetical protein KEGG: sul:SYO3AOP1_0961 SMC domain protein~SPTR: SMC domain protein%3B~IMG reference gene:2505283709 gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0420 Thein_0421 Thein_0421 Thein_0421 444846 445145 + RUN domain-containing protein KEGG: ddi:DDB_G0293570 RUN domain-containing protein~SPTR: RUN domain-containing protein%3B~IMG reference gene:2505283710 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0421 Thein_0422 Thein_0422 Thein_0422 445145 445984 + hypothetical protein KEGG: tet:TTHERM_00537070 hypothetical protein~SPTR: DNA polymerase III%2C delta subunit%3B~IMG reference gene:2505283711 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0422 Thein_0423 Thein_0423 Thein_0423 445985 447004 + histidine kinase HAMP region domain protein InterPro IPR003660~KEGG: ant:Arnit_0401 histidine kinase~PFAM: histidine kinase HAMP region domain protein~SPTR: Histidine kinase%3B~IMG reference gene:2505283712~PFAM: HAMP domain%3B Protein of unknown function (DUF3365) gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0423 Thein_0424 Thein_0424 Thein_0424 447034 448335 - multiheme cytochrome family protein InterPro IPR011031~KEGG: dat:HRM2_07570 multiheme cytochrome family protein~SPTR: Multiheme cytochrome family protein%3B~IMG reference gene:2505283713 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0424 Thein_0425 Thein_0425 Thein_0425 448607 448789 + hypothetical protein IMG reference gene:2505283714 gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0425 Thein_0426 Thein_0426 Thein_0426 448786 449754 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505283715~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0426 Thein_0427 Thein_0427 Thein_0427 450329 451144 + protein of unknown function UPF0153 InterPro IPR005358~KEGG: dol:Dole_2665 hypothetical protein~PFAM: protein of unknown function UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283716~PFAM: Uncharacterised protein family (UPF0153) gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0427 Thein_0428 Thein_0428 Thein_0428 451158 451547 + hypothetical protein KEGG: nhl:Nhal_2691 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283717~PFAM: Protein of unknown function (DUF3135) gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0428 Thein_0429 Thein_0429 Thein_0429 451544 452698 - cell division protein FtsZ COGs: COG0206 Cell division GTPase~InterPro IPR000158:IPR003008:IPR018316:IPR020805~KEGG: dol:Dole_2782 cell division protein FtsZ~PFAM: Tubulin/FtsZ GTPase%3B Tubulin/FtsZ%2C 2-layer sandwich domain~SPTR: Cell division protein ftsZ%3B~TIGRFAM: cell division protein FtsZ~IMG reference gene:2505283718~PFAM: Tubulin/FtsZ family%2C GTPase domain%3B FtsZ family%2C C-terminal domain~TIGRFAM: cell division protein FtsZ gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0429 Thein_0430 Thein_0430 Thein_0430 452695 453888 - cell division protein FtsA COGs: COG0849 Actin-like ATPase involved in cell division~InterPro IPR020823:IPR003494~KEGG: lip:LI1108 cell division protein FtsA~PFAM: cell division protein FtsA~SPTR: Cell division protein FtsA%3B~TIGRFAM: cell division protein FtsA~IMG reference gene:2505283719~PFAM: Cell division protein FtsA~TIGRFAM: cell division protein FtsA gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0430 Thein_0431 Thein_0431 Thein_0431 453895 454665 - Polypeptide-transport-associated domain protein FtsQ-type COGs: COG1589 Cell division septal protein~InterPro IPR013685~KEGG: dal:Dalk_3128 polypeptide-transport-associated domain protein FtsQ-type~PFAM: Polypeptide-transport-associated domain protein FtsQ-type~SPTR: Polypeptide-transport-associated domain protein FtsQ-type%3B~IMG reference gene:2505283720~PFAM: POTRA domain%2C FtsQ-type gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0431 Thein_0432 Thein_0432 Thein_0432 454646 455536 - UDP-N-acetylenolpyruvoylglucosamine reductase COGs: COG0812 UDP-N-acetylmuramate dehydrogenase~InterPro IPR003170:IPR006094:IPR011601:IPR016166~KEGG: glo:Glov_0668 UDP-N-acetylenolpyruvoylglucosamine reductase~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein%3B FAD linked oxidase domain protein~PRIAM: UDP-N-acetylmuramate dehydrogenase~SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase%3B~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~IMG reference gene:2505283721~PFAM: FAD binding domain%3B UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal domain~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0432 Thein_0433 Thein_0433 Thein_0433 455533 456921 - UDP-N-acetylmuramate/alanine ligase COGs: COG0773 UDP-N-acetylmuramate-alanine ligase~InterPro IPR005758:IPR000713:IPR013221:IPR004101~KEGG: sfu:Sfum_3470 UDP-N-acetylmuramate--alanine ligase~PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein~SPTR: UDP-N-acetylmuramate--L-alanine ligase%3B~TIGRFAM: UDP-N-acetylmuramate/alanine ligase~IMG reference gene:2505283722~PFAM: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramate--alanine ligase gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0433 Thein_0434 Thein_0434 Thein_0434 456914 457978 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase~InterPro IPR006009:IPR004276:IPR007235~KEGG: gme:Gmet_0412 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~PFAM: Glycosyltransferase 28 domain%3B glycosyl transferase family 28~SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B~TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~IMG reference gene:2505283723~PFAM: Glycosyltransferase family 28 C-terminal domain%3B Glycosyltransferase family 28 N-terminal domain~TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0434 Thein_0435 Thein_0435 Thein_0435 457978 459369 - UDP-N-acetylmuramoylalanine/D-glutamate ligase COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase~InterPro IPR005762:IPR013221:IPR004101~KEGG: dak:DaAHT2_1482 UDP-N-acetylmuramoylalanine/D-glutamate ligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~SPTR: UDP-N-acetylmuramoylalanine/D-glutamate ligase%3B~TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase~IMG reference gene:2505283724~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0435 Thein_0436 Thein_0436 Thein_0436 459376 460452 - phospho-N-acetylmuramoyl-pentapeptide-transferase COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR003524:IPR018480:IPR018481~KEGG: dak:DaAHT2_1483 phospho-N-acetylmuramoyl-pentapeptide-transferase~PFAM: Glycosyl transferase%2C family 4%2C conserved region%3B Phospho-N-acetylmuramoyl-pentapeptide transferase%2C conserved site~SPTR: Phospho-N-acetylmuramoyl-pentapeptide transferase%3B~TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase~IMG reference gene:2505283725~PFAM: Glycosyl transferase family 4%3B Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1~TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0436 Thein_0437 Thein_0437 Thein_0437 460453 461826 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin opimelate/D-alanyl-D-alanyl ligase COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase~InterPro IPR005863:IPR000713:IPR013221:IPR004101~KEGG: cth:Cthe_0977 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase%3B~TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-d iaminopimelate/D-alanyl-D-alanylligase~IMG reference gene:2505283726~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0437 Thein_0438 Thein_0438 Thein_0438 461823 463265 - UDP-N-acetylmuramyl-tripeptide synthetase COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase~InterProIPR005761:IPR000713:IPR013221:IPR004101:IPR 018109~KEGG: amu:Amuc_0653 UDP-N-acetylmuramyl-tripeptide synthetase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~SPTR: UDP-N-acetylmuramyl-tripeptide synthetase%3B~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase~IMG reference gene:2505283727~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0438 Thein_0439 Thein_0439 Thein_0439 463262 464617 - PASTA domain containing protein InterPro IPR005543~KEGG: tle:Tlet_1434 peptidoglycan glycosyltransferase~PFAM: PASTA domain containing protein~SMART: PASTA domain containing protein~SPTR: Peptidoglycan glycosyltransferase%3B~IMG reference gene:2505283728~PFAM: Penicillin binding protein transpeptidase domain%3B PASTA domain gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0439 Thein_0440 Thein_0440 Thein_0440 464619 464936 - hypothetical protein KEGG: dak:DaAHT2_1487 septum formation initiator~SPTR: Septum formation initiator%3B~IMG reference gene:2505283729 gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0440 Thein_0441 Thein_0441 Thein_0441 464946 465833 - S-adenosyl-methyltransferase MraW COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis~InterPro IPR002903~KEGG: sat:SYN_01737 S-adenosyl-methyltransferase MraW~PFAM: methyltransferase~SPTR: Ribosomal RNA small subunit methyltransferase H%3B~TIGRFAM: S-adenosyl-methyltransferase MraW~manually curated~IMG reference gene:2505283730~PFAM: MraW methylase family~TIGRFAM: S-adenosyl-methyltransferase MraW gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0441 Thein_0442 Thein_0442 Thein_0442 465811 466272 - MraZ protein COGs: COG2001 conserved hypothetical protein~InterPro IPR003444:IPR020603~KEGG: sfu:Sfum_3462 MraZ protein~PFAM: MraZ domain~SPTR: Protein mraZ%3B~TIGRFAM: MraZ protein~IMG reference gene:2505283731~PFAM: MraZ protein~TIGRFAM: mraZ protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0442 Thein_0443 Thein_0443 Thein_0443 466870 468411 + AAA-ATPase InterPro IPR018631:IPR012547~KEGG: saf:SULAZ_0155 conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain~PFAM: AAA-ATPase-like%3B protein of unknown function DUF1703~SPTR: Conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain%3B~IMG reference gene:2505283732~PFAM: Protein of unknown function (DUF1703)%3B Predicted AAA-ATPase gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0443 Thein_0444 Thein_0444 Thein_0444 468754 469029 + hypothetical protein KEGG: tet:TTHERM_01193540 Protein kinase domain containing protein~SPTR: Protein kinase domain containing protein%3B~IMG reference gene:2505283733 gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0444 Thein_0445 Thein_0445 Thein_0445 469023 470021 + UDP-N-acetylglucosamine 4%2C6-dehydratase COGs: COG1086 nucleoside-diphosphate sugar epimerase~InterPro IPR020025:IPR003869~KEGG: hth:HTH_1539 polysaccharide biosynthesis protein~PFAM: polysaccharide biosynthesis protein CapD~SPTR: Polysaccharide biosynthesis protein%3B~TIGRFAM: UDP-N-acetylglucosamine 4%2C6-dehydratase~IMG reference gene:2505283734~PFAM: Polysaccharide biosynthesis protein~TIGRFAM: UDP-N-acetylglucosamine 4%2C6-dehydratase gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0445 Thein_0446 Thein_0446 Thein_0446 470014 471174 + UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR020026:IPR000653~KEGG: msi:Msm_1536 pleiotropic regulatory protein DegT (PLP-dependent)~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: DegT/DnrJ/EryC1/StrS aminotransferase%3B~TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase~IMG reference gene:2505283735~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family~TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0446 Thein_0447 Thein_0447 Thein_0447 471171 472007 + acylneuraminate cytidylyltransferase COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog~InterPro IPR003329~KEGG: msi:Msm_1537 acylneuraminate cytidylyltransferase NeuS~PFAM: acylneuraminate cytidylyltransferase~SPTR: Predicted acylneuraminate cytidylyltransferase%2C NeuS%3B~IMG reference gene:2505283736~PFAM: Cytidylyltransferase gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0447 Thein_0448 Thein_0448 Thein_0448 471995 473464 + pseudaminic acid biosynthesis-associated protein PseG COGs: COG3980 Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase~InterPro IPR020023:IPR007235:IPR000182~KEGG: msi:Msm_1538 CMP-sialic acid synthetase%2C NeuA~PFAM: GCN5-related N-acetyltransferase%3B Glycosyltransferase 28 domain~SPTR: CMP-sialic acid synthetase%2C NeuA%3B~TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG~IMG reference gene:2505283737~PFAM: Acetyltransferase (GNAT) family%3B Glycosyltransferase family 28 C-terminal domain~TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0448 Thein_0449 Thein_0449 Thein_0449 473451 474503 + pseudaminic acid synthase COGs: COG2089 Sialic acid synthase~InterPro IPR020030:IPR013132:IPR013974:IPR006190~KEGG: tmt:Tmath_0718 pseudaminic acid synthase~PFAM: N-acetylneuraminic acid synthase domain%3B SAF domain protein~PRIAM: N-acetylneuraminate synthase~SPTR: Sialic acid synthase%3B~TIGRFAM: pseudaminic acid synthase~IMG reference gene:2505283738~PFAM: SAF domain%3B NeuB family~TIGRFAM: pseudaminic acid synthase gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0449 Thein_0450 Thein_0450 Thein_0450 474580 476574 - protein of unknown function DUF115 COGs: COG2604 conserved hypothetical protein~InterPro IPR002826~KEGG: hth:HTH_0655 hypothetical protein~PFAM: protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283739~PFAM: Alpha-2%2C3-sialyltransferase (CST-I)%3B Protein of unknown function DUF115 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0450 Thein_0451 Thein_0451 Thein_0451 476886 479405 - flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterProIPR001492:IPR010810:IPR001451:IPR001029:IPR 006162~KEGG: dat:HRM2_36880 putative flagellin~PFAM: flagellin domain protein%3B flagellin hook IN repeat protein%3B transferase hexapeptide repeat containing protein~SPTR: Putative flagellin%3B~IMG reference gene:2505283740~PFAM: Bacterial flagellin N-terminal helical region%3B Flagellin hook IN motif%3B Bacterial flagellin C-terminal helical region gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0451 Thein_0452 Thein_0452 Thein_0452 479698 480033 - hypothetical protein KEGG: cbb:CLD_1842 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283741 gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0452 Thein_0453 Thein_0453 Thein_0453 480300 480734 - flagellar protein FliS COGs: COG1516 Flagellin-specific chaperone FliS~InterPro IPR003713~KEGG: dak:DaAHT2_0290 flagellar protein FliS~PFAM: flagellar protein FliS~SPTR: Flagellar protein FliS%3B~IMG reference gene:2505283742~PFAM: Flagellar protein FliS~TIGRFAM: flagellar biosynthetic protein FliS gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0453 Thein_0454 Thein_0454 Thein_0454 481103 482782 - flagellar hook-associated 2 domain-containing protein COGs: COG1345 Flagellar capping protein~InterPro IPR003481:IPR010810:IPR010809~KEGG: dat:HRM2_36890 FliD~PFAM: flagellar hook-associated 2 domain-containing protein%3B flagellar hook-associated protein 2 domain-containing protein%3B flagellin hook IN repeat protein~SPTR: FliD%3B~IMG reference gene:2505283743~PFAM: Flagellar hook-associated protein 2 C-terminus%3B Flagellin hook IN motif gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0454 Thein_0455 Thein_0455 Thein_0455 482828 483313 - protein of unknown function DUF180 COGs: COG1699 conserved hypothetical protein~InterPro IPR003775~KEGG: nde:NIDE2322 flagellar assembly factor FliW~PFAM: protein of unknown function DUF180~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283744~PFAM: FliW protein gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0455 Thein_0456 Thein_0456 Thein_0456 483501 483731 - carbon storage regulator%2C CsrA COGs: COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing)~InterPro IPR003751~KEGG: lbl:LBL_0100 carbon storage regulator~PFAM: carbon storage regulator~SPTR: Carbon storage regulator homolog%3B~TIGRFAM: carbon storage regulator~IMG reference gene:2505283745~PFAM: Global regulator protein family~TIGRFAM: carbon storage regulator (csrA) gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0456 Thein_0457 Thein_0457 Thein_0457 483743 484693 - flagellar hook-associated protein 3 COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR013384:IPR001492~KEGG: mta:Moth_0747 flagellar hook-associated protein FlgL~PFAM: flagellin domain protein~SPTR: Flagellin-like%3B~TIGRFAM: flagellar hook-associated protein 3~IMG reference gene:2505283746~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region~TIGRFAM: flagellar hook-associated protein 3 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0457 Thein_0458 Thein_0458 Thein_0458 484709 488695 - flagellar hook-associated protein FlgK COGs: COG1256 Flagellar hook-associated protein~InterPro IPR002371:IPR010930:IPR018247~KEGG: dde:Dde_3152 flagellar hook-associated protein~PFAM: protein of unknown function DUF1078 domain protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: flagellar hook-associated protein FlgK~IMG reference gene:2505283747~PFAM: Domain of unknown function (DUF1078)~TIGRFAM: flagellar hook-associated protein FlgK gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0458 Thein_0459 Thein_0459 Thein_0459 488697 489029 - FlgN family protein InterPro IPR007809~KEGG: rde:RD1_0161 hypothetical protein~PFAM: FlgN family protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283748~PFAM: FlgN protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0459 Thein_0460 Thein_0460 Thein_0460 489033 489194 - hypothetical protein IMG reference gene:2505283749 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0460 Thein_0461 Thein_0461 Thein_0461 489194 489502 - Flagellar protein FlgJ InterPro IPR019301~KEGG: csc:Csac_0596 hypothetical protein~PFAM: Flagellar protein FlgJ-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283750~PFAM: Rod binding protein gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0461 Thein_0462 Thein_0462 Thein_0462 489509 490600 - flagellar P-ring protein COGs: COG1706 Flagellar basal-body P-ring protein~InterPro IPR001782~KEGG: gsu:GSU3047 flagellar basal body P-ring protein~PFAM: flagellar P-ring protein~SPTR: Flagellar P-ring protein flgI%3B~IMG reference gene:2505283751~PFAM: Flagellar P-ring protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0462 Thein_0463 Thein_0463 Thein_0463 490611 491309 - flagellar L-ring protein COGs: COG2063 Flagellar basal body L-ring protein~InterPro IPR000527~KEGG: dak:DaAHT2_2349 flagellar L-ring protein~PFAM: flagellar L-ring protein~SPTR: Flagellar L-ring protein%3B~IMG reference gene:2505283752~PFAM: Flagellar L-ring protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0463 Thein_0464 Thein_0464 Thein_0464 491309 491965 - flagella basal body P-ring formation protein FlgA COGs: COG1261 Flagellar basal body P-ring biosynthesis protein~InterPro IPR017585:IPR013974~KEGG: geo:Geob_0629 flagella basal body P-ring formation protein FlgA~PFAM: SAF domain protein~SPTR: Flageller protein FlgA%3B~TIGRFAM: flagella basal body P-ring formation protein FlgA~IMG reference gene:2505283753~PFAM: SAF domain~TIGRFAM: flagella basal body P-ring formation protein FlgA gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0464 Thein_0465 Thein_0465 Thein_0465 492014 492796 - flagellar basal-body rod protein FlgG COGs: COG4786 Flagellar basal body rod protein~InterProIPR020013:IPR012834:IPR001444:IPR010930:IPR 019776~KEGG: dal:Dalk_0993 flagellar basal body rod protein FlgG~PFAM: protein of unknown function DUF1078 domain protein%3B flagellar basal body rod protein~SPTR: Flagellar basal-body rod protein FlgG%3B~TIGRFAM: flagellar basal-body rod protein FlgG%3B fagellar hook-basal body protein~IMG reference gene:2505283754~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein~TIGRFAM: flagellar basal-body rod protein FlgF%3B fagellar hook-basal body proteins%3B flagellar basal-body rod protein FlgG%2C Gram-negative bacteria gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0465 Thein_0466 Thein_0466 Thein_0466 492807 493616 - flagellar basal-body rod protein FlgF COGs: COG4786 Flagellar basal body rod protein~InterPro IPR020013:IPR012836:IPR001444~KEGG: geo:Geob_0627 flagellar basal-body rod protein FlgF~PFAM: flagellar basal body rod protein~SPTR: Flagellar basal-body rod protein FlgF%3B~TIGRFAM: flagellar basal-body rod protein FlgF%3B fagellar hook-basal body protein~IMG reference gene:2505283755~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein~TIGRFAM: flagellar basal-body rod protein FlgF%3B fagellar hook-basal body proteins gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0466 Thein_0467 Thein_0467 Thein_0467 493932 494480 + Dinitrogenase iron-molybdenum cofactor biosynthesis protein COGs: COG1433 conserved hypothetical protein~InterPro IPR003731~KEGG: dat:HRM2_46890 hypothetical protein~PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283756~PFAM: Dinitrogenase iron-molybdenum cofactor gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0467 Thein_0468 Thein_0468 Thein_0468 494486 495316 + cobyrinic acid ac-diamide synthase COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain~InterPro IPR017896:IPR017900~KEGG: dol:Dole_0576 cobyrinic acid ac-diamide synthase~SPTR: Cobyrinic acid ac-diamide synthase%3B~IMG reference gene:2505283757~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0468 Thein_0469 Thein_0469 Thein_0469 495313 496170 + ferredoxin (iron-sulfur cluster-binding protein) COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain~InterPro IPR017896:IPR017900~KEGG: dat:HRM2_42450 ferredoxin (iron-sulfur cluster-binding protein)~SPTR: Ferredoxin (Iron-sulfur cluster-binding protein)%3B~IMG reference gene:2505283758~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0469 Thein_0470 Thein_0470 Thein_0470 496181 496549 + Dinitrogenase iron-molybdenum cofactor biosynthesis protein COGs: COG1433 conserved hypothetical protein~InterPro IPR003731~KEGG: tai:Taci_0393 dinitrogenase iron-molybdenum cofactor biosynthesis protein~PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein~SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis%3B~IMG reference gene:2505283759~PFAM: Dinitrogenase iron-molybdenum cofactor gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0470 Thein_0471 Thein_0471 Thein_0471 496646 497794 + phosphoribosylaminoimidazole carboxylase%2C ATPase subunit COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)~InterPro IPR005875:IPR003135:IPR011761~KEGG: csc:Csac_1629 phosphoribosylaminoimidazole carboxylase ATPase subunit~PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp~PRIAM: Phosphoribosylaminoimidazole carboxylase~SPTR: Phosphoribosylaminoimidazole carboxylase%3B~TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~IMG reference gene:2505283760~PFAM: ATP-grasp domain~TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C PurK protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0471 Thein_0472 Thein_0472 Thein_0472 497791 498321 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase~InterPro IPR000031~KEGG: csc:Csac_1630 phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~PRIAM: Phosphoribosylaminoimidazole carboxylase~SPTR: Phosphoribosylaminoimidazole carboxylase%2C catalytic subunit%3B~TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~IMG reference gene:2505283761~PFAM: AIR carboxylase~TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C PurE protein gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0472 Thein_0473 Thein_0473 Thein_0473 498318 498878 - orotate phosphoribosyltransferase COGs: COG0461 Orotate phosphoribosyltransferase~InterPro IPR004467:IPR000836~KEGG: tal:Thal_1476 orotate phosphoribosyltransferase~PFAM: phosphoribosyltransferase~PRIAM: Orotate phosphoribosyltransferase~SPTR: Orotate phosphoribosyl transferase%3B~TIGRFAM: orotate phosphoribosyltransferase~IMG reference gene:2505283762~PFAM: Phosphoribosyl transferase domain~TIGRFAM: orotate phosphoribosyltransferase gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0473 Thein_0474 Thein_0474 Thein_0474 498895 499824 - acetylglutamate kinase COGs: COG0548 Acetylglutamate kinase~InterPro IPR004662:IPR001048:IPR001057:IPR011148~KEGG: sfu:Sfum_0064 acetylglutamate kinase~PFAM: aspartate/glutamate/uridylate kinase~PRIAM: Acetylglutamate kinase~SPTR: Acetylglutamate kinase%3B~TIGRFAM: acetylglutamate kinase~IMG reference gene:2505283763~PFAM: Amino acid kinase family~TIGRFAM: acetylglutamate kinase gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0474 Thein_0475 Thein_0475 Thein_0475 500019 500870 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283764 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0475 Thein_0476 Thein_0476 Thein_0476 501013 501663 + ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: paa:Paes_1086 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505283765~PFAM: ABC transporter gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0476 Thein_0477 Thein_0477 Thein_0477 501660 502451 + Conserved hypothetical protein CHP00245 COGs: COG0390 ABC-type uncharacterized transport system permease component~InterPro IPR005226~KEGG: drt:Dret_1437 hypothetical protein~PFAM: Conserved hypothetical protein CHP00245~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283766~PFAM: Uncharacterised protein family (UPF0014)~TIGRFAM: TIGR00245 family protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0477 Thein_0478 Thein_0478 Thein_0478 502489 503427 - aminoglycoside phosphotransferase COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase~InterPro IPR002575~KEGG: sfu:Sfum_0532 aminoglycoside phosphotransferase~PFAM: aminoglycoside phosphotransferase~SPTR: Aminoglycoside phosphotransferase%3B~IMG reference gene:2505283767~PFAM: Phosphotransferase enzyme family gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0478 Thein_0479 Thein_0479 Thein_0479 503415 504317 - Nucleotidyl transferase COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)~InterPro IPR005835~KEGG: dak:DaAHT2_0857 nucleotidyl transferase~PFAM: Nucleotidyl transferase~SPTR: Nucleotidyl transferase%3B~IMG reference gene:2505283768~PFAM: Nucleotidyl transferase gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0479 Thein_0480 Thein_0480 Thein_0480 504324 504512 - twin-arginine translocation protein%2C TatA/E family subunit InterPro IPR006312:IPR003369:IPR003998~KEGG: dap:Dacet_2963 twin-arginine translocation protein%2C TatA/E family subunit~PFAM: sec-independent translocation protein mttA/Hcf106~SPTR: Twin-arginine translocation protein%2C TatA/E family%3B~TIGRFAM: twin-arginine translocation protein%2C TatA/E family subunit~IMG reference gene:2505283769~PFAM: mttA/Hcf106 family~TIGRFAM: twin arginine-targeting protein translocase%2C TatA/E family gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0480 Thein_0481 Thein_0481 Thein_0481 504529 505263 - Sec-independent protein translocase%2C TatC subunit COGs: COG0805 Sec-independent protein secretion pathway component TatC~InterPro IPR019822:IPR002033:IPR019820~KEGG: dat:HRM2_42350 TatC~PFAM: Sec-independent periplasmic protein translocase~SPTR: TatC%3B~TIGRFAM: Sec-independent protein translocase%2C TatC subunit~IMG reference gene:2505283770~PFAM: Sec-independent protein translocase protein (TatC)~TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0481 Thein_0482 Thein_0482 Thein_0482 505260 507203 - Transketolase domain-containing protein COGs: COG0021 Transketolase~InterPro IPR005474:IPR005475:IPR005476~KEGG: sfu:Sfum_1302 transketolase~PFAM: Transketolase domain-containing protein%3B Transketolase central region~SPTR: Transketolase domain protein%3B~IMG reference gene:2505283771~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0482 Thein_0483 Thein_0483 Thein_0483 507772 509325 - multi-sensor signal transduction histidine kinase COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation~InterProIPR000014:IPR013656:IPR003661:IPR003594:IPR 004358:IPR005467:IPR000700~KEGG: mxa:MXAN_5785 pilin regulatory protein PilS~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS fold-4 domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS domain containing protein~SPTR: Pilin regulatory protein PilS%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505283772~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0483 Thein_0484 Thein_0484 Thein_0484 509312 510667 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR001789:IPR002078:IPR002197:IPR020441:IPR 003593~KEGG: sat:SYN_02530 two-component response regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two-component response regulator%3B~IMG reference gene:2505283773~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0484 Thein_0485 Thein_0485 Thein_0485 510925 511110 - hypothetical protein KEGG: dal:Dalk_2408 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283774 gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0485 Thein_0486 Thein_0486 Thein_0486 511174 512295 - ABC transporter related protein COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003439:IPR013611:IPR017871:IPR003593~KEGG: pca:Pcar_1735 ATP-binding component of transport system for maltose~PFAM: ABC transporter related%3B Transport-associated OB domain-containing protein~SMART: AAA ATPase~SPTR: ATP-binding component of transport system for maltose%3B~IMG reference gene:2505283775~PFAM: ABC transporter%3B TOBE domain gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0486 Thein_0487 Thein_0487 Thein_0487 512295 513110 - NifC-like ABC-type porter COGs: COG0555 ABC-type sulfate transport system permease component~InterPro IPR006469:IPR011867:IPR000515~KEGG: pca:Pcar_1736 NifC-like ABC-type porter~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: NifC-like ABC-type porter%3B~TIGRFAM: NifC-like ABC-type porter%3B molybdate ABC transporter%2C inner membrane subunit~IMG reference gene:2505283776~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: molybdate ABC transporter%2C permease protein%3B NifC-like ABC-type porter gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0487 Thein_0488 Thein_0488 Thein_0488 513107 513955 - modD protein COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase~InterPro IPR006242:IPR002638~KEGG: cyc:PCC7424_4264 ModD protein~PFAM: Quinolinate phosphoribosyl transferase~PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating)~SPTR: ModD protein%3B~TIGRFAM: modD protein~IMG reference gene:2505283777~PFAM: Quinolinate phosphoribosyl transferase%2C C-terminal domain%3B Quinolinate phosphoribosyl transferase%2C N-terminal domain~TIGRFAM: nicotinate-nucleotide pyrophosphorylase%3B putative molybdenum utilization protein ModD gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0488 Thein_0489 Thein_0489 Thein_0489 513969 514703 - molybdenum ABC transporter%2C periplasmic molybdate-binding protein COGs: COG0725 ABC-type molybdate transport system periplasmic component~InterPro IPR005950:IPR006059~KEGG: pca:Pcar_1738 molybdenum ABC-type transport system%2C periplasmic component~PFAM: extracellular solute-binding protein family 1~SPTR: Molybdenum ABC-type transport system%2C periplasmic component%3B~TIGRFAM: molybdenum ABC transporter%2C periplasmic molybdate-binding protein~IMG reference gene:2505283778~PFAM: Bacterial extracellular solute-binding protein~TIGRFAM: molybdenum ABC transporter%2C periplasmic molybdate-binding protein gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0489 Thein_0490 Thein_0490 Thein_0490 515106 515225 - hypothetical protein IMG reference gene:2505283779 gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0490 Thein_0491 Thein_0491 Thein_0491 515308 516705 - fumarate lyase COGs: COG1027 Aspartate ammonia-lyase~InterPro IPR000362:IPR018951:IPR020557~KEGG: mta:Moth_1273 aspartate ammonia-lyase~PFAM: fumarate lyase%3B Fumarase C-like~SPTR: Fumarase%3B~IMG reference gene:2505283780~PFAM: Fumarase C C-terminus%3B Lyase~TIGRFAM: aspartate ammonia-lyase gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0491 Thein_0492 Thein_0492 Thein_0492 516702 516920 - hypothetical protein KEGG: adg:Adeg_1242 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283781 gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0492 Thein_0493 Thein_0493 Thein_0493 516968 518461 - biotin and thiamin synthesis associated COGs: COG1060 Thiamine biosynthesis protein ThiH~InterPro IPR007197:IPR010722:IPR006638~KEGG: adg:Adeg_1241 thiamine biosynthesis protein ThiH~PFAM: biotin and thiamin synthesis associated%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Biotin and thiamin synthesis associated%3B~IMG reference gene:2505283782~PFAM: Radical SAM superfamily%3B Biotin and Thiamin Synthesis associated domain~TIGRFAM: iron-only hydrogenase maturation rSAM protein HydG%3B thiazole biosynthesis protein ThiH gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0493 Thein_0494 Thein_0494 Thein_0494 518550 518798 - putative transcriptional regulator%2C CopG family KEGG: ate:Athe_0168 putative transcriptional regulator%2C CopG family~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283783~TIGRFAM: putative iron-only hydrogenase system regulator gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0494 Thein_0495 Thein_0495 Thein_0495 518946 520823 - hydrogenase%2C Fe-only COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterProIPR013352:IPR004108:IPR003149:IPR017896:IPR 017900~KEGG: hor:Hore_06330 NADH dehydrogenase (ubiquinone) 75 kDa subunit~PFAM: hydrogenase large subunit domain protein%3B iron hydrogenase small subunit~PRIAM: Ferredoxin hydrogenase~SPTR: NADH dehydrogenase (Ubiquinone) 75 kDa subunit%3B~TIGRFAM: hydrogenase%2C Fe-only~IMG reference gene:2505283784~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B Iron hydrogenase small subunit~TIGRFAM: hydrogenase%2C Fe-only gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0495 Thein_0496 Thein_0496 Thein_0496 520866 521531 - hypothetical protein COGs: COG2864 Cytochrome b subunit of formate dehydrogenase~InterPro IPR000516~KEGG: slp:Slip_1532 formate dehydrogenase%2C putative~SPTR: Putative formate dehydrogenase%3B~IMG reference gene:2505283785~PFAM: Cytochrome b(N-terminal)/b6/petB~TIGRFAM: formate dehydrogenase%2C gamma subunit gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0496 Thein_0497 Thein_0497 Thein_0497 521524 521886 - iron hydrogenase small subunit InterPro IPR003149~KEGG: she:Shewmr4_3251 iron hydrogenase%2C small subunit~PFAM: iron hydrogenase small subunit~SPTR: Iron hydrogenase%2C small subunit%3B~IMG reference gene:2505283786~PFAM: Iron hydrogenase small subunit gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0497 Thein_0498 Thein_0498 Thein_0498 521904 523247 - Ferredoxin hydrogenase COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterPro IPR004108:IPR017896:IPR017900~KEGG: tye:THEYE_A1726 hydrogenase~PFAM: hydrogenase large subunit domain protein~PRIAM: Ferredoxin hydrogenase~SPTR: Hydrogenase%3B~IMG reference gene:2505283787~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B 4Fe-4S binding domain~TIGRFAM: hydrogenase%2C Fe-only gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0498 Thein_0499 Thein_0499 Thein_0499 523582 524805 - small GTP-binding protein COGs: COG1160 GTPase~InterPro IPR005225:IPR002917:IPR001806:IPR003577~KEGG: pca:Pcar_1629 GTPases~PFAM: GTP-binding protein HSR1-related~SMART: Ras small GTPase%2C Ras type~SPTR: Predicted GTPases%3B~TIGRFAM: small GTP-binding protein~IMG reference gene:2505283788~PFAM: GTPase of unknown function~TIGRFAM: hydrogenase maturation GTPase HydF%3B small GTP-binding protein domain gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0499 Thein_0500 Thein_0500 Thein_0500 524781 525776 - Radical SAM domain protein COGs: COG0502 Biotin synthase~InterPro IPR007197:IPR005244:IPR006638~KEGG: pth:PTH_0983 biotin synthase~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Biotin synthase and related enzymes%3B~manually curated~IMG reference gene:2505283789~PFAM: Radical SAM superfamily~TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0500 Thein_0501 Thein_0501 Thein_0501 525877 526332 + hypothetical protein KEGG: mfe:Mefer_0555 formylmethanofuran dehydrogenase subunit E region~SPTR: Formylmethanofuran dehydrogenase subunit E region%3B~IMG reference gene:2505283790~PFAM: FmdE%2C Molybdenum formylmethanofuran dehydrogenase operon gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0501 Thein_0502 Thein_0502 Thein_0502 526329 527255 + periplasmic binding protein COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component~InterPro IPR002491~KEGG: tye:THEYE_A1082 periplasmic binding protein~PFAM: periplasmic binding protein~SPTR: Periplasmic binding protein%3B~IMG reference gene:2505283791~PFAM: Periplasmic binding protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0502 Thein_0503 Thein_0503 Thein_0503 527252 528187 + transport system permease protein COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: sfu:Sfum_0494 transport system permease protein~PFAM: transport system permease protein~SPTR: Transport system permease protein%3B~IMG reference gene:2505283792~PFAM: FecCD transport family gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0503 Thein_0504 Thein_0504 Thein_0504 528187 528951 + ABC transporter related protein COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR003439:IPR017871:IPR003593~KEGG: mif:Metin_0717 ABC transporter related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related protein%3B~IMG reference gene:2505283793~PFAM: ABC transporter gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0504 Thein_0505 Thein_0505 Thein_0505 529293 529469 - hypothetical protein KEGG: mar:MAE_29090 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283795 gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0505 Thein_0506 Thein_0506 Thein_0506 529456 529710 - hypothetical protein KEGG: mja:MJ0909 hypothetical protein~SPTR: Plasmid stabilization system%3B~IMG reference gene:2505283796 gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0506 Thein_0507 Thein_0507 Thein_0507 535369 536295 - hypothetical protein KEGG: ecb:100052471 coiled-coil domain containing 88A~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283801 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0507 Thein_0508 Thein_0508 Thein_0508 536357 537940 + extracellular solute-binding protein family 5 COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: gme:Gmet_1234 extracellular solute-binding protein~PFAM: extracellular solute-binding protein family 5~SPTR: Extracellular solute-binding protein%2C family 5%3B~IMG reference gene:2505283802~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0508 Thein_0509 Thein_0509 Thein_0509 537930 538838 - PP-loop domain protein COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~InterPro IPR011063:IPR012089~KEGG: saf:SULAZ_1054 PP-loop domain protein~PFAM: PP-loop domain protein~SPTR: PP-loop domain protein%3B~IMG reference gene:2505283803~PFAM: PP-loop family~TIGRFAM: TIGR00269 family protein gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0509 Thein_0510 Thein_0510 Thein_0510 538801 540033 - ribonuclease BN COGs: COG1295 membrane protein~InterPro IPR017039:IPR004664:IPR000944~KEGG: ade:Adeh_0697 ribonuclease BN%2C putative~PFAM: ribonuclease BN%3B protein of unknown function UPF0074~SPTR: Ribonuclease BN%2C putative%3B~TIGRFAM: ribonuclease BN~IMG reference gene:2505283804~PFAM: Ribonuclease BN-like family%3B Transcriptional regulator~TIGRFAM: YihY family protein (not ribonuclease BN) gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0510 Thein_0511 Thein_0511 Thein_0511 540079 541812 - type IV pilus secretin PilQ COGs: COG4796 Type II secretory pathway component HofQ~InterPro IPR013355:IPR011662:IPR004846:IPR001775~KEGG: pfo:Pfl01_0409 type II and III secretion system protein~PFAM: type II and III secretion system protein%3B Secretin/TonB short domain~SPTR: Pilus secretin%3B~TIGRFAM: type IV pilus secretin PilQ~IMG reference gene:2505283805~PFAM: Bacterial type II/III secretion system short domain%3B Secretin and TonB N terminus short domain%3B Bacterial type II and III secretion system protein~TIGRFAM: type IV pilus secretin (or competence protein) PilQ gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0511 Thein_0512 Thein_0512 Thein_0512 541800 542360 - hypothetical protein KEGG: mxa:MXAN_5773 putative lipoprotein~SPTR: Fimbrial assembly protein%3B~IMG reference gene:2505283806~PFAM: Pilus assembly protein%2C PilP gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0512 Thein_0513 Thein_0513 Thein_0513 542363 542986 - hypothetical protein KEGG: dak:DaAHT2_2311 pilus assembly protein PilO~SPTR: Pilus assembly protein PilO%3B~IMG reference gene:2505283807~PFAM: Pilus assembly protein%2C PilO gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0513 Thein_0514 Thein_0514 Thein_0514 542976 543512 - Fimbrial assembly family protein InterPro IPR007813~KEGG: dol:Dole_0332 fimbrial assembly family protein~PFAM: Fimbrial assembly family protein~SPTR: Fimbrial assembly family protein%3B~IMG reference gene:2505283808~PFAM: Fimbrial assembly protein (PilN) gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0514 Thein_0515 Thein_0515 Thein_0515 543509 544459 - hypothetical protein COGs: COG4972 Tfp pilus assembly protein ATPase PilM~KEGG: dol:Dole_0333 type IV pilus assembly protein PilM~SPTR: Type IV pilus assembly protein PilM%3B~IMG reference gene:2505283809~PFAM: Competence protein A~TIGRFAM: type IV pilus assembly protein PilM gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0515 Thein_0516 Thein_0516 Thein_0516 544614 546416 + GTP-binding protein LepA COGs: COG0481 Membrane GTPase LepA~InterProIPR005225:IPR006297:IPR000795:IPR004161:IPR 000640:IPR013842~KEGG: chy:CHY_0410 GTP-binding protein LepA~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain-containing protein%3B GTP-binding protein LepA domain protein~SPTR: GTP-binding protein lepA%3B~TIGRFAM: GTP-binding protein LepA%3B small GTP-binding protein~IMG reference gene:2505283810~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B GTP-binding protein LepA C-terminus~TIGRFAM: GTP-binding protein LepA%3B small GTP-binding protein domain gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0516 Thein_0517 Thein_0517 Thein_0517 546467 547105 + signal peptidase I COGs: COG0681 Signal peptidase I~InterProIPR000223:IPR019759:IPR019756:IPR019757:IPR 019758~KEGG: tye:THEYE_A0098 signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region~PRIAM: Signal peptidase I~SPTR: Signal peptidase I%3B~TIGRFAM: signal peptidase I~IMG reference gene:2505283811~PFAM: Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0517 Thein_0518 Thein_0518 Thein_0518 547344 548009 + hypothetical protein KEGG: dat:HRM2_20530 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283812 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0518 Thein_0519 Thein_0519 Thein_0519 548006 548929 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase~PFAM: GGDEF domain containing protein~SMART: GGDEF domain containing protein~SPTR: GGDEF%3B~TIGRFAM: diguanylate cyclase~IMG reference gene:2505283813~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0519 Thein_0520 Thein_0520 Thein_0520 548913 549770 - metal dependent phosphohydrolase COGs: COG1639 signal transduction protein~InterPro IPR006675:IPR013976:IPR003607~KEGG: dak:DaAHT2_0261 metal dependent phosphohydrolase~PFAM: Metal-dependent hydrolase HDOD~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal-dependent phosphohydrolase%2C HD subdomain%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505283814~PFAM: HDOD domain~TIGRFAM: uncharacterized domain HDIG gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0520 Thein_0521 Thein_0521 Thein_0521 549770 550078 - hypothetical protein KEGG: dak:DaAHT2_0260 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283815 gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0521 Thein_0522 Thein_0522 Thein_0522 550075 551529 - glutamyl-tRNA(Gln) amidotransferase%2C A subunit COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase~InterPro IPR004412:IPR000120:IPR020556~KEGG: dal:Dalk_4493 aspartyl/glutamyl-tRNA amidotransferase subunit A~PFAM: Amidase~SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A%3B~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C A subunit~IMG reference gene:2505283816~PFAM: Amidase~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C A subunit gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0522 Thein_0523 Thein_0523 Thein_0523 551541 551828 - glutamyl-tRNA(Gln) amidotransferase%2C C subunit COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit~InterPro IPR003837~KEGG: tpd:Teth39_1693 aspartyl/glutamyl-tRNA amidotransferase subunit C~PFAM: Glu-tRNAGln amidotransferase C subunit~SPTR: Glutamyl-tRNA(Gln) amidotransferase%2C C subunit%3B~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C C subunit~IMG reference gene:2505283817~PFAM: Glu-tRNAGln amidotransferase C subunit~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C C subunit gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0523 Thein_0524 Thein_0524 Thein_0524 551841 553190 - phosphomethylpyrimidine kinase COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase~InterPro IPR004399:IPR013749:IPR019293~KEGG: pho:PH1155 phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1%3B Phosphomethylpyrimidine kinase~PRIAM: Phosphomethylpyrimidine kinase~SPTR: 446aa long hypothetical thiamine biosynthesis protein%3B~TIGRFAM: phosphomethylpyrimidine kinase~IMG reference gene:2505283818~PFAM: Phosphomethylpyrimidine kinase%3B Archaeal phosphomethylpyrimidine kinase~TIGRFAM: phosphomethylpyrimidine kinase gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0524 Thein_0525 Thein_0525 Thein_0525 553347 554084 + SagB-type dehydrogenase domain protein COGs: COG0778 Nitroreductase~InterPro IPR020051:IPR000415~KEGG: drt:Dret_0780 SagB-type dehydrogenase domain protein~PFAM: nitroreductase~SPTR: SagB-type dehydrogenase domain protein%3B~TIGRFAM: SagB-type dehydrogenase domain~IMG reference gene:2505283819~PFAM: Nitroreductase family~TIGRFAM: SagB-type dehydrogenase domain gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0525 Thein_0526 Thein_0526 Thein_0526 554084 555073 + glycosyl transferase family 9 COGs: COG0859 ADP-heptose:LPS heptosyltransferase~InterPro IPR002201~KEGG: dal:Dalk_1097 glycosyl transferase family 9~PFAM: glycosyl transferase family 9~SPTR: Glycosyl transferase family 9%3B~IMG reference gene:2505283820~PFAM: Glycosyltransferase family 9 (heptosyltransferase) gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0526 Thein_0527 Thein_0527 Thein_0527 554931 555854 - hypothetical protein KEGG: dal:Dalk_4656 integrin-like repeat-containing protein~SPTR: Integrin-like repeat-containing protein%3B~IMG reference gene:2505283821~PFAM: Curli production assembly/transport component CsgG gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0527 Thein_0528 Thein_0528 Thein_0528 555880 557835 - 5-oxoprolinase (ATP-hydrolyzing) COGs: COG0145 N-methylhydantoinase A/acetone carboxylase beta subunit~InterPro IPR008040:IPR002821~KEGG: aae:aq_708 N-methylhydantoinase A~PFAM: Hydantoinase/oxoprolinase%3B Hydantoinaseoxoprolinase domain protein~PRIAM: 5-oxoprolinase (ATP-hydrolyzing)~SPTR: N-methylhydantoinase A%3B~IMG reference gene:2505283822~PFAM: Hydantoinase/oxoprolinase%3B Hydantoinase/oxoprolinase N-terminal region gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0528 Thein_0529 Thein_0529 Thein_0529 557819 558322 - phosphodiesterase%2C MJ0936 family COGs: COG0622 phosphoesterase~InterPro IPR000979:IPR004843:IPR020935~KEGG: dak:DaAHT2_0278 phosphodiesterase%2C MJ0936 family~PFAM: metallophosphoesterase~SPTR: Phosphodiesterase%2C MJ0936 family%3B~TIGRFAM: phosphodiesterase%2C MJ0936 family~IMG reference gene:2505283823~TIGRFAM: phosphoesterase%2C MJ0936 family gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0529 Thein_0530 Thein_0530 Thein_0530 558466 558933 + heat shock protein Hsp20 COGs: COG0071 Molecular chaperone (small heat shock protein)~InterPro IPR002068~KEGG: nhl:Nhal_1151 heat shock protein HSP20~PFAM: heat shock protein Hsp20~SPTR: Heat shock protein Hsp20%3B~IMG reference gene:2505283824~PFAM: Hsp20/alpha crystallin family gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0530 Thein_0531 Thein_0531 Thein_0531 558959 559354 + heat shock protein Hsp20 COGs: COG0071 Molecular chaperone (small heat shock protein)~InterPro IPR002068~KEGG: eba:ebB88 putative heat shock protein~PFAM: heat shock protein Hsp20~SPTR: Heat shock protein%2C Hsp20 family%3B~IMG reference gene:2505283825~PFAM: Hsp20/alpha crystallin family gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0531 Thein_0532 Thein_0532 Thein_0532 559543 561258 + protein of unknown function DUF181 COGs: COG1944 conserved hypothetical protein~InterPro IPR003776:IPR001440:IPR019734:IPR013026~KEGG: dol:Dole_1241 hypothetical protein~PFAM: protein of unknown function DUF181%3B Tetratricopeptide TPR_1 repeat-containing protein~SMART: Tetratricopeptide repeat~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283826~PFAM: YcaO-like family%3B Tetratricopeptide repeat~TIGRFAM: uncharacterized domain gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0532 Thein_0533 Thein_0533 Thein_0533 561251 561682 + NIL domain protein InterPro IPR018449:IPR017896:IPR017900~KEGG: sat:SYN_00800 ferridoxin~PFAM: NIL domain~SPTR: Ferridoxin%3B~IMG reference gene:2505283827~PFAM: 4Fe-4S binding domain%3B NIL domain gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0533 Thein_0534 Thein_0534 Thein_0534 561683 562729 + tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain~InterPro IPR004506~KEGG: swo:Swol_0464 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~SPTR: tRNA-specific 2-thiouridylase mnmA%3B~TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~IMG reference gene:2505283828~PFAM: tRNA methyl transferase~TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0534 Thein_0535 Thein_0535 Thein_0535 562736 563059 + pseudogene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0535 Thein_0536 Thein_0536 Thein_0536 563059 563724 + phosphatidylserine decarboxylase related protein COGs: COG0688 Phosphatidylserine decarboxylase~InterPro IPR004428:IPR003817~KEGG: sat:SYN_00913 phosphatidylserine decarboxylase~PFAM: phosphatidylserine decarboxylase-related~PRIAM: Phosphatidylserine decarboxylase~SPTR: Phosphatidylserine decarboxylase proenzyme%3B~TIGRFAM: phosphatidylserine decarboxylase related protein~IMG reference gene:2505283830~PFAM: Phosphatidylserine decarboxylase~TIGRFAM: phosphatidylserine decarboxylase precursor-related protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0536 Thein_0537 Thein_0537 Thein_0537 563699 564445 + CDP-diacylglycerol/serine O-phosphatidyltransferase COGs: COG1183 Phosphatidylserine synthase~InterPro IPR004533:IPR000462~KEGG: dak:DaAHT2_0542 CDP-diacylglycerol/serine O-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: CDP-diacylglycerol/serine O-phosphatidyltransferase%3B~TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase~IMG reference gene:2505283831~PFAM: CDP-alcohol phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0537 Thein_0538 Thein_0538 Thein_0538 564514 566169 + 2-isopropylmalate synthase COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR005671:IPR000891:IPR013709:IPR002034~KEGG: tye:THEYE_A0650 2-isopropylmalate synthase~PFAM: pyruvate carboxyltransferase%3B LeuA allosteric (dimerisation) domain-containing protein~SPTR: 2-isopropylmalate synthase%3B~TIGRFAM: 2-isopropylmalate synthase~IMG reference gene:2505283832~PFAM: HMGL-like%3B LeuA allosteric (dimerisation) domain~TIGRFAM: 2-isopropylmalate synthase%2C bacterial type gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0538 Thein_0539 Thein_0539 Thein_0539 566162 566521 + response regulator receiver protein COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789~KEGG: phe:Phep_3751 sigma-54 factor interaction domain-containing protein~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Putative two-component response regulator transcriptional regulatory protein%3B~IMG reference gene:2505283833~PFAM: Response regulator receiver domain gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0539 Thein_0540 Thein_0540 Thein_0540 566522 569275 + Heat shock protein 70 COGs: COG0443 Molecular chaperone~InterPro IPR013126:IPR001023:IPR018181~KEGG: dal:Dalk_0767 DnaK-related protein~PFAM: Heat shock protein 70~SPTR: DnaK-related protein%3B~IMG reference gene:2505283834~PFAM: DNA-K related protein%3B Hsp70 protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0540 Thein_0541 Thein_0541 Thein_0541 569268 569543 + histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR000119~KEGG: slt:Slit_1730 integration host factor%2C alpha subunit~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein~SPTR: Integration host factor subunit alpha%3B~IMG reference gene:2505283835~PFAM: Bacterial DNA-binding protein gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0541 Thein_0542 Thein_0542 Thein_0542 569621 570430 + extracellular solute-binding protein family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638:IPR018313~KEGG: nam:NAMH_0588 extracellular solute-binding protein%2C family 3~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3~SPTR: Extracellular solute-binding protein%2C family 3%3B~IMG reference gene:2505283836~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0542 Thein_0543 Thein_0543 Thein_0543 570551 571258 + polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: nam:NAMH_0587 amino acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Amino acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine%3B~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~IMG reference gene:2505283837~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0543 Thein_0544 Thein_0544 Thein_0544 571236 572033 + polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: nam:NAMH_0586 amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family%3B~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~IMG reference gene:2505283838~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0544 Thein_0545 Thein_0545 Thein_0545 572026 572769 + ABC transporter related protein COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003439:IPR017871:IPR003593~KEGG: nam:NAMH_0585 amino acid permease ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Amino acid permease ATP-binding protein%3B~IMG reference gene:2505283839~PFAM: ABC transporter gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0545 Thein_0546 Thein_0546 Thein_0546 572872 574839 + 5-oxoprolinase (ATP-hydrolyzing) COGs: COG0145 N-methylhydantoinase A/acetone carboxylase beta subunit~InterPro IPR008040:IPR002821~KEGG: ddf:DEFDS_0768 N-methylhydantoinase A~PFAM: Hydantoinase/oxoprolinase%3B Hydantoinaseoxoprolinase domain protein~PRIAM: 5-oxoprolinase (ATP-hydrolyzing)~SPTR: N-methylhydantoinase A%3B~IMG reference gene:2505283840~PFAM: Hydantoinase/oxoprolinase%3B Hydantoinase/oxoprolinase N-terminal region gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0546 Thein_0547 Thein_0547 Thein_0547 574854 576416 + 5-oxoprolinase (ATP-hydrolyzing) COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit~InterPro IPR003692~KEGG: ddf:DEFDS_0769 N-methylhydantoinase B~PFAM: Hydantoinase B/oxoprolinase~PRIAM: 5-oxoprolinase (ATP-hydrolyzing)~SPTR: N-methylhydantoinase B%3B~IMG reference gene:2505283841~PFAM: Hydantoinase B/oxoprolinase gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0547 Thein_0548 Thein_0548 Thein_0548 576431 577411 + Extracellular solute-binding protein%2C family 7 COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR018389~KEGG: ddf:DEFDS_0770 C4-dicarboxylate transporter substrate-binding protein~PFAM: Extracellular solute-binding protein%2C family 7~SPTR: C4-dicarboxylate transporter%2C substrate-binding protein%3B~IMG reference gene:2505283842~PFAM: Bacterial extracellular solute-binding protein%2C family 7 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0548 Thein_0549 Thein_0549 Thein_0549 577415 577906 + Tripartite ATP-independent periplasmic transporter DctQ component COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component~InterPro IPR007387~KEGG: ddf:DEFDS_0771 C4-dicarboxylate transporter small subunit~PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~SPTR: C4-dicarboxylate transporter%2C small subunit%3B~IMG reference gene:2505283843~PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0549 Thein_0550 Thein_0550 Thein_0550 577903 579240 + TRAP dicarboxylate transporter%2C DctM subunit COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component~InterPro IPR004681:IPR010656~KEGG: ddf:DEFDS_0772 C4-dicarboxylate transporter large subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: C4-dicarboxylate transporter%2C large subunit%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~IMG reference gene:2505283844~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C DctM subunit gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0550 Thein_0551 Thein_0551 Thein_0551 579317 579667 - protein of unknown function DUF498 COGs: COG1504 conserved hypothetical protein~InterPro IPR007523~KEGG: adg:Adeg_1298 protein of unknown function DUF498~PFAM: protein of unknown function DUF498~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283845~PFAM: Protein of unknown function (DUF498/DUF598) gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0551 Thein_0552 Thein_0552 Thein_0552 579667 580767 - peptide chain release factor 1 COGs: COG0216 Protein chain release factor A~InterPro IPR004373:IPR005139:IPR000352~KEGG: csc:Csac_1523 peptide chain release factor 1~PFAM: Class I peptide chain release factor%3B PCRF domain protein~SPTR: Peptide chain release factor 1%3B~TIGRFAM: peptide chain release factor 1~IMG reference gene:2505283846~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 1 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0552 Thein_0553 Thein_0553 Thein_0553 580771 581001 - ribosomal protein L31 COGs: COG0254 Ribosomal protein L31~InterPro IPR002150~KEGG: cno:NT01CX_0552 50S ribosomal protein L31~PFAM: ribosomal protein L31~SPTR: 50S ribosomal protein L31%3B~TIGRFAM: ribosomal protein L31~IMG reference gene:2505283847~PFAM: Ribosomal protein L31~TIGRFAM: ribosomal protein L31 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0553 Thein_0554 Thein_0554 Thein_0554 581071 582453 - transcription termination factor Rho COGs: COG1158 Transcription termination factor~InterProIPR004665:IPR011112:IPR011113:IPR000194:IPR 011129:IPR003593~KEGG: sfu:Sfum_1711 transcription termination factor Rho~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B Rho termination factor RNA-binding%3B Rho termination factor domain protein~SMART: Cold shock protein%3B AAA ATPase~SPTR: Transcription termination factor Rho%3B~TIGRFAM: transcription termination factor Rho~IMG reference gene:2505283848~PFAM: Rho termination factor%2C N-terminal domain%3B Rho termination factor%2C RNA-binding domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: transcription termination factor Rho gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0554 Thein_0555 Thein_0555 Thein_0555 582627 583532 - dihydroorotate dehydrogenase family protein COGs: COG0167 Dihydroorotate dehydrogenase~InterPro IPR005720:IPR012135:IPR001295~KEGG: hth:HTH_0418 dihydroorotate dehydrogenase~PFAM: dihydroorotate oxidase~SPTR: Dihydroorotate dehydrogenase%3B~TIGRFAM: dihydroorotate dehydrogenase family protein~IMG reference gene:2505283849~PFAM: Dihydroorotate dehydrogenase~TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0555 Thein_0556 Thein_0556 Thein_0556 583560 584219 - transaldolase COGs: COG0176 Transaldolase~InterPro IPR004731:IPR001585:IPR018225~KEGG: aae:aq_119 putative translaldolase~PFAM: Transaldolase~SPTR: Probable transaldolase%3B~TIGRFAM: transaldolase~IMG reference gene:2505283850~PFAM: Transaldolase~TIGRFAM: fructose-6-phosphate aldolase%2C TalC/MipB family gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0556 Thein_0557 Thein_0557 Thein_0557 584230 585435 - argininosuccinate synthase COGs: COG0137 Argininosuccinate synthase~InterPro IPR001518:IPR018223~KEGG: dak:DaAHT2_2212 argininosuccinate synthase~PFAM: argininosuccinate synthase~PRIAM: Argininosuccinate synthase~SPTR: Argininosuccinate synthase%3B~TIGRFAM: argininosuccinate synthase~IMG reference gene:2505283851~PFAM: Arginosuccinate synthase~TIGRFAM: argininosuccinate synthase gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0557 Thein_0558 Thein_0558 Thein_0558 585532 586515 + Polyprenyl synthetase COGs: COG0142 Geranylgeranyl pyrophosphate synthase~InterPro IPR000092~KEGG: sfu:Sfum_1586 trans-hexaprenyltranstransferase~PFAM: Polyprenyl synthetase~SPTR: Trans-hexaprenyltranstransferase%3B~IMG reference gene:2505283852~PFAM: Polyprenyl synthetase gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0558 Thein_0559 Thein_0559 Thein_0559 586527 587696 + Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828:IPR000709~KEGG: dvm:DvMF_1478 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2505283853~PFAM: Receptor family ligand binding region gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0559 Thein_0560 Thein_0560 Thein_0560 587675 588325 + Haloacid dehalogenase domain protein hydrolase COGs: COG0546 phosphatase~InterPro IPR005834:IPR005833~KEGG: dak:DaAHT2_2039 HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B~IMG reference gene:2505283854~PFAM: haloacid dehalogenase-like hydrolase gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0560 Thein_0561 Thein_0561 Thein_0561 588331 588813 + hypothetical protein KEGG: rms:RMA_0544 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283855 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0561 Thein_0562 Thein_0562 Thein_0562 588823 590193 + integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467~KEGG: sus:Acid_7874 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2505283856~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0562 Thein_0563 Thein_0563 Thein_0563 590159 591283 - peptidase T-like protein COGs: COG2195 Di- and tripeptidase~InterPro IPR010162:IPR008007:IPR002933:IPR011650~KEGG: dat:HRM2_27370 PepT~PFAM: peptidase dimerisation domain protein%3B peptidase M20%3B peptidase M42 family protein~SPTR: PepT%3B~TIGRFAM: peptidase T-like protein~IMG reference gene:2505283857~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain~TIGRFAM: peptidase T-like protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0563 Thein_0564 Thein_0564 Thein_0564 591286 591564 - acylphosphatase COGs: COG1254 Acylphosphatase~InterPro IPR001792:IPR020456:IPR017968~KEGG: sfu:Sfum_1427 acylphosphatase~PFAM: acylphosphatase~SPTR: Acylphosphatase%3B~IMG reference gene:2505283858~PFAM: Acylphosphatase gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0564 Thein_0565 Thein_0565 Thein_0565 591721 593121 + cyclic nucleotide-binding protein COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain~InterPro IPR005646:IPR000595~KEGG: dak:DaAHT2_0452 protein of unknown function DUF342~PFAM: protein of unknown function DUF342~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283859~PFAM: Protein of unknown function (DUF342) gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0565 Thein_0566 Thein_0566 Thein_0566 593105 593419 - protein of unknown function DUF190 COGs: COG1993 conserved hypothetical protein~InterPro IPR003793~KEGG: ddf:DEFDS_0610 hypothetical protein~PFAM: protein of unknown function DUF190~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283860~PFAM: Uncharacterized ACR%2C COG1993 gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0566 Thein_0567 Thein_0567 Thein_0567 593427 593804 - CrcB protein COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation~InterPro IPR003691~KEGG: sti:Sthe_1756 CrcB protein~PFAM: Camphor resistance CrcB protein~SPTR: Protein crcB homolog%3B~TIGRFAM: CrcB protein~IMG reference gene:2505283861~PFAM: CrcB-like protein~TIGRFAM: crcB protein gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0567 Thein_0568 Thein_0568 Thein_0568 593801 595285 - glycosyl transferase family 39 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family~InterPro IPR003342~KEGG: tye:THEYE_A0589 hypothetical protein~PFAM: glycosyl transferase family 39~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283862~PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0568 Thein_0569 Thein_0569 Thein_0569 595282 595878 - phosphoesterase PA-phosphatase related protein InterPro IPR000326~KEGG: min:Minf_1458 membrane-associated phospholipid phosphatase~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related~SPTR: Membrane-associated phospholipid phosphatase%3B~IMG reference gene:2505283863~PFAM: PAP2 superfamily gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0569 Thein_0570 Thein_0570 Thein_0570 596575 597822 - hypothetical protein KEGG: pca:Pcar_0652 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283864 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0570 Thein_0571 Thein_0571 Thein_0571 598584 599453 - peptidase U61 LD-carboxypeptidase A COGs: COG1619 conserved hypothetical protein~InterPro IPR003507~KEGG: dol:Dole_0590 peptidase U61 LD-carboxypeptidase A~PFAM: peptidase U61 LD-carboxypeptidase A~SPTR: Peptidase U61 LD-carboxypeptidase A%3B~IMG reference gene:2505283865~PFAM: LD-carboxypeptidase gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0571 Thein_0572 Thein_0572 Thein_0572 599446 600213 - putative transcriptional acitvator%2C Baf family COGs: COG1521 Putative transcriptional regulator protein~InterPro IPR004619~KEGG: gur:Gura_2816 pantothenate kinase~PFAM: Bvg accessory factor~PRIAM: Pantothenate kinase~SPTR: Type III pantothenate kinase%3B~TIGRFAM: transcriptional activator%2C Baf family~IMG reference gene:2505283866~PFAM: Bordetella pertussis Bvg accessory factor family~TIGRFAM: pantothenate kinase%2C type III gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0572 Thein_0573 Thein_0573 Thein_0573 600215 601021 - methyltransferase small COGs: COG2264 Ribosomal protein L11 methylase~InterPro IPR007848~KEGG: dat:HRM2_11520 PrmA3~PFAM: methyltransferase small~SPTR: PrmA3%3B~IMG reference gene:2505283867~PFAM: Ribosomal protein L11 methyltransferase (PrmA) gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0573 Thein_0574 Thein_0574 Thein_0574 601002 602780 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001915:IPR001440:IPR019734:IPR013026~KEGG: dak:DaAHT2_0005 peptidase M48 Ste24p~PFAM: Tetratricopeptide TPR_1 repeat-containing protein%3B peptidase M48 Ste24p~SMART: Tetratricopeptide repeat~SPTR: Peptidase M48 Ste24p%3B~IMG reference gene:2505283868~PFAM: Peptidase family M48 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0574 Thein_0575 Thein_0575 Thein_0575 603079 605289 + TonB-dependent receptor plug COGs: COG4206 Outer membrane cobalamin receptor protein~InterPro IPR012910:IPR000531~KEGG: tye:THEYE_A1083 TonB-dependent receptor~PFAM: TonB-dependent receptor plug%3B TonB-dependent receptor~SPTR: TonB-dependent receptor%3B~IMG reference gene:2505283869~PFAM: TonB-dependent Receptor Plug Domain%3B TonB dependent receptor gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0575 Thein_0576 Thein_0576 Thein_0576 606185 609913 + Magnesium chelatase COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase~InterPro IPR003672~KEGG: adg:Adeg_1646 cobaltochelatase~PFAM: CobN/magnesium chelatase~PRIAM: Magnesium chelatase~SPTR: Cobaltochelatase%3B~IMG reference gene:2505283870~PFAM: CobN/Magnesium Chelatase gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0576 Thein_0577 Thein_0577 Thein_0577 610280 611389 - riboflavin biosynthesis protein RibD COGs: COG0117 Pyrimidine deaminase~InterProIPR004794:IPR011549:IPR002125:IPR002734:IPR 016192~KEGG: mta:Moth_0915 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase~PFAM: bifunctional deaminase-reductase domain protein%3B CMP/dCMP deaminase zinc-binding~SPTR: 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase%3B~TIGRFAM: riboflavin biosynthesis protein RibD~IMG reference gene:2505283871~PFAM: RibD C-terminal domain%3B Cytidine and deoxycytidylate deaminase zinc-binding region~TIGRFAM: riboflavin-specific deaminase C-terminal domain%3B riboflavin biosynthesis protein RibD gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0577 Thein_0578 Thein_0578 Thein_0578 611431 611634 - hypothetical protein KEGG: dal:Dalk_3199 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283872 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0578 Thein_0579 Thein_0579 Thein_0579 611888 614071 + (p)ppGpp synthetase I%2C SpoT/RelA COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase~InterProIPR004811:IPR006674:IPR007685:IPR004095:IPR 002912:IPR003607~KEGG: geo:Geob_2145 (p)ppGpp synthetase I%2C SpoT/RelA~PFAM: RelA/SpoT domain protein%3B metal-dependent phosphohydrolase HD sub domain%3B TGS domain-containing protein%3B amino acid-binding ACT domain protein~PRIAM: GTP diphosphokinase~SMART: metal-dependent phosphohydrolase HD region~SPTR: (P)ppGpp synthetase I%2C SpoT/RelA%3B~TIGRFAM: RelA/SpoT family protein~manually curated~IMG reference gene:2505283874~PFAM: HD domain%3B ACT domain%3B TGS domain%3B Region found in RelA / SpoT proteins~TIGRFAM: (p)ppGpp synthetase%2C RelA/SpoT family gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0579 Thein_0580 Thein_0580 Thein_0580 614068 614265 - ribosomal protein L28 InterPro IPR001383~KEGG: kol:Kole_1660 ribosomal protein L28~PFAM: ribosomal protein L28~SPTR: 50S ribosomal protein L28%3B~TIGRFAM: ribosomal protein L28~IMG reference gene:2505283875~PFAM: Ribosomal L28 family~TIGRFAM: ribosomal protein L28 gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0580 Thein_0581 Thein_0581 Thein_0581 614349 615725 - replicative DNA helicase COGs: COG0305 Replicative DNA helicase~InterPro IPR007692:IPR007693:IPR007694:IPR003593~KEGG: dak:DaAHT2_1151 replicative DNA helicase~PFAM: DnaB domain protein helicase domain protein~SMART: AAA ATPase~SPTR: DnaB helicase%3B~TIGRFAM: replicative DNA helicase~IMG reference gene:2505283876~PFAM: DnaB-like helicase N terminal domain%3B DnaB-like helicase C terminal domain~TIGRFAM: replicative DNA helicase gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0581 Thein_0582 Thein_0582 Thein_0582 616000 616245 - hypothetical protein KEGG: pyo:PY01733 19096-22891~SPTR: Predicted protein%3B~IMG reference gene:2505283877 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0582 Thein_0583 Thein_0583 Thein_0583 616349 616822 + 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase~InterPro IPR003526:IPR020555~KEGG: csc:Csac_1587 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~PFAM: MECDP-synthase~SPTR: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%3B~TIGRFAM: 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~IMG reference gene:2505283878~PFAM: YgbB family~TIGRFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0583 Thein_0584 Thein_0584 Thein_0584 616815 618626 + excinuclease ABC%2C C subunit COGs: COG0322 Nuclease subunit of the excinuclease complex~InterPro IPR004791:IPR000305:IPR001943:IPR001162~KEGG: dak:DaAHT2_0851 excinuclease ABC%2C C subunit~PFAM: excinuclease ABC C subunit domain protein%3B Excinuclease ABC C subunit domain protein%3B UvrB/UvrC protein~SMART: Excinuclease ABC C subunit domain protein~SPTR: Excinuclease ABC%2C C subunit%3B~TIGRFAM: excinuclease ABC%2C C subunit~IMG reference gene:2505283879~PFAM: UvrB/uvrC motif%3B UvrC Helix-hairpin-helix N-terminal%3B GIY-YIG catalytic domain~TIGRFAM: excinuclease ABC%2C C subunit gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0584 Thein_0585 Thein_0585 Thein_0585 618690 619538 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283880~PFAM: Transposase IS200 like gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0585 Thein_0586 Thein_0586 Thein_0586 619606 620247 + formylmethanofuran dehydrogenase subunit E region COGs: COG2191 Formylmethanofuran dehydrogenase subunit E~InterPro IPR003814~KEGG: dak:DaAHT2_0551 formylmethanofuran dehydrogenase subunit E region~PFAM: formylmethanofuran dehydrogenase subunit E region~SPTR: Formylmethanofuran dehydrogenase subunit E region%3B~IMG reference gene:2505283881~PFAM: Prokaryotic dksA/traR C4-type zinc finger%3B FmdE%2C Molybdenum formylmethanofuran dehydrogenase operon gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0586 Thein_0587 Thein_0587 Thein_0587 620155 621162 - DNA polymerase III%2C delta prime subunit COGs: COG2812 DNA polymerase III gamma/tau subunits~InterPro IPR004622~KEGG: pca:Pcar_1692 DNA polymerase III%2C gamma/tau subunits~SPTR: DNA polymerase III%2C delta prime subunit%3B~TIGRFAM: DNA polymerase III%2C delta prime subunit~IMG reference gene:2505283882~TIGRFAM: DNA polymerase III%2C delta' subunit gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0587 Thein_0588 Thein_0588 Thein_0588 621150 622421 - UDP-N-acetylglucosamine1-carboxyvinyltransferase COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase~InterPro IPR005750:IPR001986~KEGG: dol:Dole_2551 UDP-N-acetylglucosamine 1-carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase%3B~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~IMG reference gene:2505283883~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0588 Thein_0589 Thein_0589 Thein_0589 622430 623320 - protein-(glutamine-N5) methyltransferase%2C release factor-specific COGs: COG2890 Methylase of polypeptide chain release factors~InterPro IPR004556:IPR019874:IPR007848:IPR002052~KEGG: tye:THEYE_A0370 HemK family protein~PFAM: methyltransferase small~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: HemK family protein%3B~TIGRFAM: protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B modification methylase%2C HemK family~IMG reference gene:2505283884~PFAM: Methyltransferase small domain~TIGRFAM: HemK family putative methylases%3B protein-(glutamine-N5) methyltransferase%2C release factor-specific gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0589 Thein_0590 Thein_0590 Thein_0590 623383 624900 + amino acid-binding ACT domain protein InterPro IPR002912~KEGG: mem:Memar_1825 beta-lactamase domain-containing protein~PFAM: amino acid-binding ACT domain protein~SPTR: Beta-lactamase domain protein%3B~IMG reference gene:2505283885~PFAM: Metallo-beta-lactamase superfamily%3B ACT domain gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0590 Thein_0591 Thein_0591 Thein_0591 625137 626936 + aspartyl-tRNA synthetase COGs: COG0173 Aspartyl-tRNA synthetase~InterProIPR004524:IPR004365:IPR004364:IPR004115:IPR 002312:IPR006195~KEGG: dak:DaAHT2_2033 aspartyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B nucleic acid binding OB-fold tRNA/helicase-type%3B GAD domain protein~SPTR: Aspartyl-tRNA synthetase%3B~TIGRFAM: aspartyl-tRNA synthetase~IMG reference gene:2505283886~PFAM: GAD domain%3B tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: aspartyl-tRNA synthetase%2C bacterial type gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0591 Thein_0592 Thein_0592 Thein_0592 627028 629208 + alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) COGs: COG0380 Trehalose-6-phosphate synthase~InterPro IPR012766:IPR003337:IPR006379:IPR001830~KEGG: mem:Memar_2216 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB~PFAM: glycosyl transferase family 20%3B trehalose-phosphatase~SPTR: Alpha%2Calpha-trehalose-phosphate synthase (UDP-forming)%3B~TIGRFAM: alpha%2Calpha-trehalose-phosphate synthase [UDP-forming]%3B trehalose-phosphatase%3B HAD-superfamily hydrolase%2C subfamily IIB~IMG reference gene:2505283887~PFAM: Trehalose-phosphatase%3B Glycosyltransferase family 20~TIGRFAM: trehalose-phosphatase%3B alpha%2Calpha-trehalose-phosphate synthase [UDP-forming]%3B HAD-superfamily hydrolase%2C subfamily IIB gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0592 Thein_0593 Thein_0593 Thein_0593 629210 629875 + hypothetical protein KEGG: pca:Pcar_3110 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283888 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0593 Thein_0594 Thein_0594 Thein_0594 629868 631115 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: sfu:Sfum_2348 glycosyl transferase%2C group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2505283889~PFAM: Glycosyl transferases group 1 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0594 Thein_0595 Thein_0595 Thein_0595 631193 631888 + Lysine exporter protein (LYSE/YGGA) InterPro IPR001123~KEGG: hbu:Hbut_0772 hypothetical protein~PFAM: Lysine exporter protein (LYSE/YGGA)~SPTR: Conserved archaeal protein%3B~IMG reference gene:2505283890~PFAM: LysE type translocator gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0595 Thein_0596 Thein_0596 Thein_0596 632385 633338 - 4-hydroxythreonine-4-phosphate dehydrogenase COGs: COG1995 Pyridoxal phosphate biosynthesis protein~InterPro IPR005255~KEGG: dak:DaAHT2_1165 4-hydroxythreonine-4-phosphate dehydrogenase~PFAM: Pyridoxal phosphate biosynthetic protein PdxA~PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase~SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase%3B~TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase~IMG reference gene:2505283891~PFAM: Pyridoxal phosphate biosynthetic protein PdxA~TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0596 Thein_0597 Thein_0597 Thein_0597 633331 634260 - Radical SAM domain protein COGs: COG0731 Fe-S oxidoreductase~InterPro IPR007197:IPR006638~KEGG: dak:DaAHT2_2249 radical SAM domain protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505283892~PFAM: Radical SAM superfamily gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0597 Thein_0598 Thein_0598 Thein_0598 634260 635393 - DAHP synthetase I/KDSA COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR006218~KEGG: afr:AFE_2671 phospho-2-dehydro-3-deoxyheptonate aldolase%2C putative~PFAM: DAHP synthetase I/KDSA~SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase%2C putative%3B~IMG reference gene:2505283893~PFAM: DAHP synthetase I family~TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0598 Thein_0599 Thein_0599 Thein_0599 635965 636795 + MscS Mechanosensitive ion channel COGs: COG0668 Small-conductance mechanosensitive channel~InterPro IPR008910:IPR006685~KEGG: dde:Dde_2565 hypothetical protein~PFAM: MscS Mechanosensitive ion channel%3B Conserved TM helix repeat-containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283894~PFAM: Mechanosensitive ion channel%3B Conserved TM helix gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0599 Thein_0600 Thein_0600 Thein_0600 636894 637931 + recA protein COGs: COG0468 RecA/RadA recombinase~InterProIPR013765:IPR001553:IPR020588:IPR020587:IPR 020584:IPR003593~KEGG: azc:AZC_2855 recombinase A~PFAM: RecA domain protein~SMART: AAA ATPase~SPTR: Protein recA%3B~TIGRFAM: recA protein~IMG reference gene:2505283895~PFAM: recA bacterial DNA recombination protein~TIGRFAM: protein RecA gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0600 Thein_0601 Thein_0601 Thein_0601 637921 638871 + PfkB domain protein COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase~InterPro IPR011611~KEGG: mfa:Mfla_0769 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha%2Cbeta-D-heptose 7-phosphate 1-kinase~PFAM: PfkB domain protein~SPTR: Bifunctional protein hldE%3B~IMG reference gene:2505283896~PFAM: pfkB family carbohydrate kinase~TIGRFAM: rfaE bifunctional protein%2C domain I gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0601 Thein_0602 Thein_0602 Thein_0602 638868 639782 - Auxin Efflux Carrier COGs: COG0679 permease~InterPro IPR004776~KEGG: dak:DaAHT2_2426 auxin efflux carrier~PFAM: Auxin Efflux Carrier~SPTR: Auxin Efflux Carrier%3B~IMG reference gene:2505283897~PFAM: Membrane transport protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0602 Thein_0603 Thein_0603 Thein_0603 639820 642468 - outer membrane protein assembly complex%2C YaeT protein COGs: COG4775 Outer membrane protein/protective antigen OMA87~InterPro IPR016474:IPR010827:IPR000184~KEGG: dak:DaAHT2_1309 outer membrane protein assembly complex%2C YaeT protein~PFAM: surface antigen (D15)%3B surface antigen variable number repeat-containing protein~SPTR: Surface antigen (D15):Surface antigen variable number%3B~TIGRFAM: outer membrane protein assembly complex%2C YaeT protein~IMG reference gene:2505283898~PFAM: Surface antigen variable number repeat%3B Surface antigen~TIGRFAM: outer membrane protein assembly complex%2C YaeT protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0603 Thein_0604 Thein_0604 Thein_0604 642444 643160 - ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003439:IPR015854:IPR017871:IPR003593~KEGG: ppd:Ppro_3016 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505283899~PFAM: ABC transporter gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0604 Thein_0605 Thein_0605 Thein_0605 643153 644427 - lipoprotein releasing system%2C transmembrane protein%2C LolC/E family COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR011925:IPR003838~KEGG: sfu:Sfum_3743 LolC/E family lipoprotein releasing system%2C transmembrane protein~PFAM: protein of unknown function DUF214~SPTR: Lipoprotein releasing system%2C transmembrane protein%2C LolC/E family%3B~TIGRFAM: lipoprotein releasing system%2C transmembrane protein%2C LolC/E family~IMG reference gene:2505283900~PFAM: Predicted permease~TIGRFAM: lipoprotein releasing system%2C transmembrane protein%2C LolC/E family gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0605 Thein_0606 Thein_0606 Thein_0606 644424 645917 - lysyl-tRNA synthetase COGs: COG1190 Lysyl-tRNA synthetase (class II)~InterProIPR002313:IPR006195:IPR004365:IPR004364:IPR 018149~KEGG: sfu:Sfum_3742 lysyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B nucleic acid binding OB-fold tRNA/helicase-type~SPTR: Lysyl-tRNA synthetase%3B~TIGRFAM: lysyl-tRNA synthetase~IMG reference gene:2505283901~PFAM: tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: lysyl-tRNA synthetase%2C eukaryotic and non-spirochete bacterial gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0606 Thein_0607 Thein_0607 Thein_0607 645987 647498 - UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR014016:IPR000212~KEGG: drt:Dret_2402 UvrD/REP helicase~PFAM: UvrD/REP helicase~SPTR: UvrD/REP helicase%3B~IMG reference gene:2505283902~PFAM: UvrD/REP helicase gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0607 Thein_0608 Thein_0608 Thein_0608 647549 648466 - metal dependent phosphohydrolase COGs: COG1639 signal transduction protein~InterPro IPR013976:IPR003607~KEGG: dal:Dalk_3268 metal dependent phosphohydrolase~PFAM: Metal-dependent hydrolase HDOD~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal dependent phosphohydrolase%3B~IMG reference gene:2505283903~PFAM: HDOD domain~TIGRFAM: uncharacterized domain HDIG gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0608 Thein_0609 Thein_0609 Thein_0609 648512 648982 - hypothetical protein COGs: COG5483 conserved hypothetical protein~InterPro IPR014519~KEGG: tye:THEYE_A0530 hypothetical protein~SPTR: Conserved Archaeal protein%3B~IMG reference gene:2505283904~PFAM: Protein of unknown function%2C DUF488 gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0609 Thein_0610 Thein_0610 Thein_0610 649029 649247 + regulatory protein%2C FmdB family InterPro IPR013429~KEGG: dal:Dalk_1639 regulatory protein%2C FmdB family~PFAM: Putative regulatory protein FmdB~SPTR: Regulatory protein%2C FmdB family%3B~TIGRFAM: regulatory protein%2C FmdB family~IMG reference gene:2505283905~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0610 Thein_0611 Thein_0611 Thein_0611 649277 649885 + SNARE associated Golgi protein-like protein COGs: COG0586 membrane-associated protein~InterPro IPR015414~KEGG: abu:Abu_2024 hypothetical protein~PFAM: SNARE associated Golgi protein~SPTR: Conserved hypothetical integral membrane protein%3B~IMG reference gene:2505283906~PFAM: SNARE associated Golgi protein gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0611 Thein_0612 Thein_0612 Thein_0612 649882 650433 - hypothetical protein KEGG: tye:THEYE_A1137 UvrD/REP helicase domain protein%2C putative~SPTR: UvrD/REP helicase domain protein%2C putative%3B~IMG reference gene:2505283907~PFAM: Domain of unknown function DUF83 gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0612 Thein_0613 Thein_0613 Thein_0613 650423 652897 - UvrD/REP helicase COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)~InterPro IPR014016:IPR014017:IPR000212~KEGG: dds:Ddes_0979 UvrD/REP helicase~PFAM: UvrD/REP helicase~SPTR: UvrD/REP helicase%3B~IMG reference gene:2505283908~PFAM: UvrD/REP helicase gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0613 Thein_0614 Thein_0614 Thein_0614 652890 654305 - hypothetical protein KEGG: ccv:CCV52592_0802 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283909 gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0614 Thein_0615 Thein_0615 Thein_0615 654364 655470 - Radical SAM domain protein COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR016431:IPR007197~KEGG: mtp:Mthe_1490 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505283910~PFAM: Radical SAM superfamily gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0615 Thein_0616 Thein_0616 Thein_0616 655472 656752 - protein of unknown function DUF107 COGs: COG1030 Membrane-bound serine protease (ClpP class)~InterPro IPR002810~KEGG: tye:THEYE_A0592 membrane-bound serine protease~PFAM: protein of unknown function DUF107~SPTR: Membrane-bound serine protease%3B~IMG reference gene:2505283911~PFAM: Clp protease%3B NfeD-like gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0616 Thein_0617 Thein_0617 Thein_0617 657159 658145 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: dak:DaAHT2_2578 transcriptional regulator%2C LysR family~PFAM: LysR substrate-binding%3B regulatory protein LysR~SPTR: Transcriptional regulator%2C LysR family%3B~IMG reference gene:2505283912~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0617 Thein_0618 Thein_0618 Thein_0618 658146 660578 + ATP-dependent DNA helicase RecG COGs: COG1200 RecG-like helicase~InterProIPR014021:IPR001650:IPR004365:IPR011545:IPR 014001:IPR004609~KEGG: gur:Gura_1869 ATP-dependent DNA helicase RecG~PFAM: DEAD/DEAH box helicase domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: ATP-dependent DNA helicase RecG%3B~TIGRFAM: ATP-dependent DNA helicase RecG~IMG reference gene:2505283913~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase%3B OB-fold nucleic acid binding domain~TIGRFAM: ATP-dependent DNA helicase RecG gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0618 Thein_0619 Thein_0619 Thein_0619 660589 661890 + homoserine dehydrogenase COGs: COG0460 Homoserine dehydrogenase~InterProIPR016204:IPR005106:IPR001342:IPR002912:IPR 019811~KEGG: sfu:Sfum_1218 homoserine dehydrogenase~PFAM: homoserine dehydrogenase%3B homoserine dehydrogenase NAD-binding%3B amino acid-binding ACT domain protein~SPTR: Homoserine dehydrogenase%3B~IMG reference gene:2505283914~PFAM: Homoserine dehydrogenase%3B Homoserine dehydrogenase%2C NAD binding domain%3B ACT domain gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0619 Thein_0620 Thein_0620 Thein_0620 661936 662517 + hypoxanthine phosphoribosyltransferase COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase~InterPro IPR000836:IPR005904~KEGG: sfu:Sfum_1422 hypoxanthine phosphoribosyltransferase~PFAM: phosphoribosyltransferase~PRIAM: Hypoxanthine phosphoribosyltransferase~SPTR: Hypoxanthine phosphoribosyltransferase%3B~TIGRFAM: hypoxanthine phosphoribosyltransferase~IMG reference gene:2505283915~PFAM: Phosphoribosyl transferase domain~TIGRFAM: hypoxanthine phosphoribosyltransferase gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0620 Thein_0621 Thein_0621 Thein_0621 662690 662869 - hypothetical protein KEGG: dak:DaAHT2_2408 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283916 gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0621 Thein_0622 Thein_0622 Thein_0622 662889 663257 - hypothetical protein KEGG: dak:DaAHT2_2407 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283917 gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0622 Thein_0623 Thein_0623 Thein_0623 663270 663602 - hypothetical protein KEGG: dak:DaAHT2_2406 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283918 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0623 Thein_0624 Thein_0624 Thein_0624 663626 663886 - SirA-like domain-containing protein InterPro IPR001455~KEGG: dak:DaAHT2_2405 SirA family protein~PFAM: SirA-like domain-containing protein~SPTR: SirA-like%3B~IMG reference gene:2505283919~PFAM: SirA-like protein gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0624 Thein_0625 Thein_0625 Thein_0625 663925 665091 - protein of unknown function DUF395 YeeE/YedE InterPro IPR007272~KEGG: dak:DaAHT2_2412 protein of unknown function DUF395 YeeE/YedE~PFAM: protein of unknown function DUF395 YeeE/YedE~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283920~PFAM: YeeE/YedE family (DUF395) gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0625 Thein_0626 Thein_0626 Thein_0626 665496 668138 + peptidase M16 domain protein COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765:IPR007863:IPR001431~KEGG: dak:DaAHT2_1974 peptidase M16 domain protein~PFAM: peptidase M16 domain protein~SPTR: Peptidase M16-like%3B~IMG reference gene:2505283921~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0626 Thein_0627 Thein_0627 Thein_0627 668272 668577 - hypothetical protein KEGG: pgu:PGUG_02080 hypothetical protein~SPTR: Golgi to ER traffic protein 1%3B~IMG reference gene:2505283922 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0627 Thein_0628 Thein_0628 Thein_0628 668574 669338 - hypothetical protein COGs: COG2014 conserved hypothetical protein~KEGG: ppd:Ppro_1948 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283923~PFAM: Domain of unknown function (DUF364) gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0628 Thein_0629 Thein_0629 Thein_0629 669319 670416 - ATPase-like%2C ParA/MinD COGs: COG0489 ATPase involved in chromosome partitioning~InterPro IPR002744:IPR019591:IPR000808~KEGG: sti:Sthe_0642 protein of unknown function DUF59~PFAM: ATPase-like%2C ParA/MinD%3B protein of unknown function DUF59~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283924~PFAM: ParA/MinD ATPase like%3B Domain of unknown function DUF59%3B ATPase MipZ gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0629 Thein_0630 Thein_0630 Thein_0630 670530 671930 - tRNA modification GTPase TrmE COGs: COG0486 GTPase~InterPro IPR004520:IPR018948:IPR002917:IPR005225~KEGG: dak:DaAHT2_2558 tRNA modification GTPase TrmE~PFAM: GTP-binding protein TrmE-like%3B GTP-binding protein HSR1-related~SPTR: tRNA modification GTPase TrmE%3B~TIGRFAM: tRNA modification GTPase TrmE%3B small GTP-binding protein~IMG reference gene:2505283925~PFAM: GTPase of unknown function%3B GTP-binding protein TrmE N-terminus~TIGRFAM: small GTP-binding protein domain%3B tRNA modification GTPase TrmE gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0630 Thein_0631 Thein_0631 Thein_0631 671927 672586 - single-stranded nucleic acid binding R3H domain-containing protein COGs: COG1847 RNA-binding protein~InterPro IPR001374~KEGG: sfu:Sfum_2598 single-stranded nucleic acid binding R3H domain-containing protein~PFAM: single-stranded nucleic acid binding R3H domain-containing protein~SMART: single-stranded nucleic acid binding R3H domain-containing protein~SPTR: Single-stranded nucleic acid binding R3H domain protein%3B~IMG reference gene:2505283926~PFAM: R3H domain gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0631 Thein_0632 Thein_0632 Thein_0632 672583 674193 - membrane protein insertase%2C YidC/Oxa1 family COGs: COG0706 Preprotein translocase subunit YidC~InterPro IPR001708:IPR013308:IPR019998:IPR020001~KEGG: dps:DP0855 hypothetical protein~PFAM: 60 kDa inner membrane insertion protein~SPTR: Conserved hypothetical membrane protein%3B~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%3B membrane protein insertase%2C YidC/Oxa1 family domain containing~IMG reference gene:2505283927~PFAM: 60Kd inner membrane protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain%3B membrane protein insertase%2C YidC/Oxa1 family%2C N-terminal domain gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0632 Thein_0633 Thein_0633 Thein_0633 674172 674453 - protein of unknown function DUF37 COGs: COG0759 conserved hypothetical protein~InterPro IPR002696~KEGG: lsa:LSA1120 hypothetical protein~PFAM: protein of unknown function DUF37~SPTR: UPF0161 protein LCA_1120%3B~IMG reference gene:2505283928~PFAM: Domain of unknown function DUF37~TIGRFAM: conserved hypothetical protein YidD gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0633 Thein_0634 Thein_0634 Thein_0634 674425 674802 - ribonuclease P protein component COGs: COG0594 RNase P protein component~InterPro IPR000100:IPR020539~KEGG: sat:SYN_01012 ribonuclease P protein component~PFAM: ribonuclease P protein~SPTR: Ribonuclease P protein component%3B~TIGRFAM: ribonuclease P protein component~IMG reference gene:2505283929~PFAM: Ribonuclease P~TIGRFAM: ribonuclease P protein component%2C eubacterial gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0634 Thein_0635 Thein_0635 Thein_0635 674784 674918 - ribosomal protein L34 InterPro IPR000271:IPR020939~KEGG: tme:Tmel_1628 50S ribosomal protein L34~PFAM: ribosomal protein L34~SPTR: 50S ribosomal protein L34%3B~TIGRFAM: ribosomal protein L34~IMG reference gene:2505283930~PFAM: Ribosomal protein L34~TIGRFAM: ribosomal protein L34%2C bacterial type gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0635 Thein_0636 Thein_0636 Thein_0636 675071 675961 - hypothetical protein KEGG: nis:NIS_0012 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283931~PFAM: YfdX protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0636 Thein_0637 Thein_0637 Thein_0637 676306 678234 + molybdenum cofactor synthesis domain protein COGs: COG0303 Molybdopterin biosynthesis enzyme~InterPro IPR005110:IPR001453:IPR005111:IPR020817~KEGG: sfu:Sfum_0615 molybdenum cofactor synthesis domain-containing protein~PFAM: MoeA domain protein domain I and II%3B molybdopterin binding domain%3B MoeA domain protein domain IV~SPTR: Molybdenum cofactor synthesis domain%3B~TIGRFAM: molybdenum cofactor synthesis domain protein~IMG reference gene:2505283932~PFAM: Probable molybdopterin binding domain%3B MoeA N-terminal region (domain I and II)%3B MoeA C-terminal region (domain IV)~TIGRFAM: molybdenum cofactor synthesis domain gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0637 Thein_0638 Thein_0638 Thein_0638 678344 679087 - pseudogene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0638 Thein_0639 Thein_0639 Thein_0639 679889 680956 - ParA protein COGs: COG1192 ATPase involved in chromosome partitioning~KEGG: bgl:bglu_1g17180 ParA protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283934~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0639 Thein_0640 Thein_0640 Thein_0640 681563 681910 - transcriptional modulator of MazE/toxin%2C MazF KEGG: rca:Rcas_0617 transcriptional modulator of MazE/toxin%2C MazF~SPTR: Transcriptional modulator of MazE/toxin%2C MazF%3B~IMG reference gene:2505283935~PFAM: PemK-like protein gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0640 Thein_0641 Thein_0641 Thein_0641 681911 682120 - hypothetical protein KEGG: srm:SRM_00767 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283936~PFAM: Protein of unknown function (DUF2281) gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0641 Thein_0642 Thein_0642 Thein_0642 682301 684148 - hypothetical protein KEGG: sfu:Sfum_0165 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283937 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0642 Thein_0643 Thein_0643 Thein_0643 684138 684485 - Uncharacterized protein family UPF0102 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase~InterPro IPR003509~KEGG: dak:DaAHT2_1166 protein of unknown function UPF0102~PFAM: Uncharacterised protein family UPF0102~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283938~PFAM: Uncharacterised protein family UPF0102~TIGRFAM: TIGR00252 family protein gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0643 Thein_0644 Thein_0644 Thein_0644 684445 685152 - Ribonuclease H COGs: COG0164 Ribonuclease HII~InterPro IPR001352~KEGG: lbu:LBUL_1192 ribonuclease HII~PFAM: ribonuclease HII/HIII~PRIAM: Ribonuclease H~SPTR: Ribonuclease HII%3B~manually curated~IMG reference gene:2505283939~PFAM: Ribonuclease HII gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0644 Thein_0645 Thein_0645 Thein_0645 685109 685456 - ribosomal protein L19 COGs: COG0335 Ribosomal protein L19~InterPro IPR001857:IPR018257~KEGG: chy:CHY_1428 50S ribosomal protein L19~PFAM: ribosomal protein L19~SPTR: 50S ribosomal protein L19%3B~TIGRFAM: ribosomal protein L19~IMG reference gene:2505283940~PFAM: Ribosomal protein L19~TIGRFAM: ribosomal protein L19%2C bacterial type gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0645 Thein_0646 Thein_0646 Thein_0646 685474 686052 - Protein of unknown function DUF2168 COGs: COG4752 conserved hypothetical protein~InterPro IPR019230~KEGG: tjr:TherJR_2045 protein of unknown function DUF2168~PFAM: Protein of unknown function DUF2168~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283941~PFAM: Uncharacterized protein conserved in bacteria (DUF2168) gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0646 Thein_0647 Thein_0647 Thein_0647 686039 686779 - tRNA (guanine-N1)-methyltransferase COGs: COG0336 tRNA-(guanine-N1)-methyltransferase~InterPro IPR002649:IPR016009~KEGG: dtu:Dtur_1534 tRNA (guanine-N(1)-)-methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase~PRIAM: tRNA (guanine-N(1)-)-methyltransferase~SPTR: tRNA (guanine-N(1)-)-methyltransferase%3B~TIGRFAM: tRNA (guanine-N1)-methyltransferase~IMG reference gene:2505283942~PFAM: tRNA (Guanine-1)-methyltransferase~TIGRFAM: tRNA (guanine-N1)-methyltransferase gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0647 Thein_0648 Thein_0648 Thein_0648 686889 687827 + Mg2 transporter protein CorA family protein COGs: COG0598 Mg2+ and Co2+ transporter~InterPro IPR002523~KEGG: afl:Aflv_1374 metal ion transporter~PFAM: Mg2 transporter protein CorA family protein~SPTR: Metal ion transporter%3B~IMG reference gene:2505283943~PFAM: CorA-like Mg2+ transporter protein gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0648 Thein_0649 Thein_0649 Thein_0649 687844 688623 + undecaprenol kinase COGs: COG1968 Uncharacterized bacitracin resistance protein~InterPro IPR003824~KEGG: adg:Adeg_1845 undecaprenol kinase~PFAM: Bacitracin resistance protein BacA~SPTR: Undecaprenyl-diphosphatase%3B~TIGRFAM: undecaprenol kinase~IMG reference gene:2505283944~PFAM: Bacitracin resistance protein BacA~TIGRFAM: undecaprenyl-diphosphatase UppP gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0649 Thein_0650 Thein_0650 Thein_0650 688616 689635 + serine protease Do COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001940~KEGG: dth:DICTH_1189 serine protease Do~SPTR: Serine protease Do%3B~IMG reference gene:2505283945 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0650 Thein_0651 Thein_0651 Thein_0651 689632 690342 + Methyltransferase-16%2C putative InterPro IPR019410~KEGG: dak:DaAHT2_2335 methyltransferase-16%2C putative~PFAM: Methyltransferase-16%2C putative~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283946~PFAM: Putative methyltransferase gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0651 Thein_0652 Thein_0652 Thein_0652 690878 691834 - CDP-alcohol phosphatidyltransferase InterPro IPR000462~KEGG: hoh:Hoch_0245 CDP-alcohol phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: CDP-alcohol phosphatidyltransferase%3B~IMG reference gene:2505283947~PFAM: CDP-alcohol phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0652 Thein_0653 Thein_0653 Thein_0653 691831 692226 - C4-type zinc finger DksA/TraR family protein InterPro IPR000962~KEGG: noc:Noc_2010 C4-type zinc finger DksA/TraR family protein~SPTR: C4-type zinc finger protein%2C DksA/TraR family%3B~IMG reference gene:2505283948~PFAM: Prokaryotic dksA/traR C4-type zinc finger gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0653 Thein_0654 Thein_0654 Thein_0654 692237 692743 - hypothetical protein KEGG: pca:Pcar_0017 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283949 gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0654 Thein_0655 Thein_0655 Thein_0655 692756 693523 - hypothetical protein KEGG: dps:DP2272 temperature sensitive supressor~SPTR: Related to temperature sensitive supressor%3B~IMG reference gene:2505283950 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0655 Thein_0656 Thein_0656 Thein_0656 693502 693987 - hypothetical protein KEGG: sat:SYN_01357 putative cytoplasmic protein~SPTR: Hypothetical cytosolic protein%3B~IMG reference gene:2505283951 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0656 Thein_0657 Thein_0657 Thein_0657 694506 695162 - protein of unknown function DUF1555 InterPro IPR003305:IPR011449:IPR013424~KEGG: mac:MA2808 hypothetical protein~PFAM: protein of unknown function DUF1555%3B Carbohydrate-binding CenC domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283952~TIGRFAM: PEP-CTERM putative exosortase interaction domain gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0657 Thein_0658 Thein_0658 Thein_0658 695406 696701 - Phosphoribosylaminoimidazolecarboxamide formyltransferase COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)~InterPro IPR002695:IPR013982~KEGG: dak:DaAHT2_1420 IMP cyclohydrolase~PFAM: AICARFT/IMPCHase bienzyme formylation region~PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase~SMART: AICARFT/IMPCHase bienzyme formylation region~SPTR: IMP cyclohydrolase%3B~IMG reference gene:2505283953~PFAM: AICARFT/IMPCHase bienzyme gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0658 Thein_0659 Thein_0659 Thein_0659 696845 697666 - Spermine synthase COGs: COG0421 Spermidine synthase~InterPro IPR001045~KEGG: chy:CHY_1240 spermidine synthase~PFAM: Spermine synthase~SPTR: Spermidine synthase%3B~IMG reference gene:2505283954~PFAM: Spermine/spermidine synthase~TIGRFAM: spermidine synthase gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0659 Thein_0660 Thein_0660 Thein_0660 697663 698097 - S-adenosylmethionine decarboxylase proenzyme COGs: COG1586 S-adenosylmethionine decarboxylase~InterPro IPR003826:IPR017716~KEGG: ddf:DEFDS_0969 adenosylmethionine decarboxylase~PFAM: S-adenosylmethionine decarboxylase related~SPTR: Adenosylmethionine decarboxylase%3B~TIGRFAM: S-adenosylmethionine decarboxylase proenzyme~IMG reference gene:2505283955~PFAM: S-adenosylmethionine decarboxylase~TIGRFAM: S-adenosylmethionine decarboxylase proenzyme%2C Bacillus form gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0660 Thein_0661 Thein_0661 Thein_0661 698374 700506 - TRAP transporter%2C 4TM/12TM fusion protein COGs: COG4666 TRAP-type uncharacterized transport system fused permease components~InterPro IPR010656:IPR011853~KEGG: nam:NAMH_0701 transporter~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: Transporter%3B~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~IMG reference gene:2505283957~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0661 Thein_0662 Thein_0662 Thein_0662 700506 701477 - TRAP transporter solute receptor%2C TAXI family COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component~InterPro IPR011852~KEGG: nam:NAMH_0700 immunogenic protein~SPTR: Immunogenic protein%3B~TIGRFAM: TRAP transporter solute receptor%2C TAXI family~IMG reference gene:2505283958~PFAM: NMT1/THI5 like~TIGRFAM: TRAP transporter solute receptor%2C TAXI family gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0662 Thein_0663 Thein_0663 Thein_0663 702161 703333 - protein of unknown function DUF111 COGs: COG1641 conserved hypothetical protein~InterPro IPR002822~KEGG: dth:DICTH_1434 hypothetical protein~PFAM: protein of unknown function DUF111~SPTR: UPF0272 protein DICTH_1434%3B~IMG reference gene:2505283959~PFAM: Protein of unknown function DUF111~TIGRFAM: TIGR00299 family protein gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0663 Thein_0664 Thein_0664 Thein_0664 703314 703943 - SNARE associated Golgi protein-like protein COGs: COG0398 conserved hypothetical protein~InterPro IPR015414~KEGG: dal:Dalk_0616 SNARE associated Golgi protein~PFAM: SNARE associated Golgi protein~SPTR: SNARE associated Golgi protein%3B~IMG reference gene:2505283960~PFAM: SNARE associated Golgi protein gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0664 Thein_0665 Thein_0665 Thein_0665 704020 705051 - phosphate ABC transporter%2C periplasmic phosphate-binding protein COGs: COG0226 ABC-type phosphate transport system periplasmic component~InterPro IPR006059:IPR005673~KEGG: dge:Dgeo_0649 periplasmic phosphate binding protein~PFAM: extracellular solute-binding protein family 1~SPTR: ABC-type phosphate transport system%2C periplasmic component%2C PstS%3B~TIGRFAM: phosphate ABC transporter%2C periplasmic phosphate-binding protein~IMG reference gene:2505283961~PFAM: Bacterial extracellular solute-binding protein~TIGRFAM: phosphate ABC transporter%2C phosphate-binding protein gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0665 Thein_0666 Thein_0666 Thein_0666 705140 706828 - hypothetical protein InterPro IPR011031~KEGG: sse:Ssed_4024 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505283962 gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0666 Thein_0667 Thein_0667 Thein_0667 706825 707643 - Cytochrome b/b6 domain protein InterPro IPR005797~KEGG: nmr:Nmar_1543 cytochrome b/b6 domain-containing protein~PFAM: Cytochrome b/b6 domain~SPTR: Cytochrome b/b6 domain%3B~IMG reference gene:2505283963 gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0667 Thein_0668 Thein_0668 Thein_0668 707627 708025 - Rieske (2Fe-2S) iron-sulfur domain protein COGs: COG0723 Rieske Fe-S protein~InterPro IPR017941:IPR005805~KEGG: sth:STH3146 plastoquinol--plastocyanin reductase~PFAM: Rieske [2Fe-2S] iron-sulphur domain~SPTR: Plastoquinol--plastocyanin reductase%3B~IMG reference gene:2505283964~PFAM: Rieske [2Fe-2S] domain gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0668 Thein_0669 Thein_0669 Thein_0669 708026 709372 - RNA methyltransferase%2C TrmA family COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase~InterPro IPR002792:IPR010280:IPR001566~KEGG: gem:GM21_2158 RNA methyltransferase%2C TrmA family~PFAM: (Uracil-5)-methyltransferase%3B deoxyribonuclease/rho motif-related TRAM~SPTR: RNA methyltransferase%2C TrmA family%3B~TIGRFAM: RNA methyltransferase%2C TrmA family~IMG reference gene:2505283965~PFAM: TRAM domain%3B tRNA (Uracil-5-)-methyltransferase~TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0669 Thein_0670 Thein_0670 Thein_0670 709344 711674 - cysteine synthase COGs: COG0215 Cysteinyl-tRNA synthetase~InterProIPR001926:IPR015803:IPR001216:IPR005856:IPR 002308~KEGG: sat:SYN_00075 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase class Ia %3B Pyridoxal-5'-phosphate-dependent protein beta subunit~SPTR: Cysteinyl-tRNA synthetase%3B~TIGRFAM: cysteine synthase%3B cysteinyl-tRNA synthetase~IMG reference gene:2505283966~PFAM: tRNA synthetases class I (C) catalytic domain%3B DALR domain%3B Pyridoxal-phosphate dependent enzyme~TIGRFAM: cysteine synthases%3B cysteinyl-tRNA synthetase%3B cysteine synthase B gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0670 Thein_0671 Thein_0671 Thein_0671 711713 713089 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR002078:IPR001789:IPR002197:IPR003593:IPR 020441~KEGG: sat:SYN_01093 response regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains%3B~IMG reference gene:2505283967~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0671 Thein_0672 Thein_0672 Thein_0672 713082 714323 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR005467:IPR003661:IPR003594:IPR004358~KEGG: tye:THEYE_A0262 sensory box histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Signal transduction histidine kinase%3B~IMG reference gene:2505283968~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0672 Thein_0673 Thein_0673 Thein_0673 714323 714676 - hypothetical protein KEGG: gur:Gura_3412 nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283969 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0673 Thein_0674 Thein_0674 Thein_0674 715123 716250 + ABC transporter related protein COGs: COG3839 ABC-type sugar transport systems ATPase components~InterPro IPR003439:IPR013611:IPR003593:IPR017871~KEGG: ant:Arnit_1355 ABC transporter-like protein~PFAM: ABC transporter related%3B Transport-associated OB domain-containing protein~SMART: AAA ATPase~SPTR: ABC transporter related protein%3B~IMG reference gene:2505283970~PFAM: ABC transporter%3B TOBE domain gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0674 Thein_0675 Thein_0675 Thein_0675 716177 717493 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: dge:Dgeo_2662 extracellular solute-binding protein~PFAM: extracellular solute-binding protein family 1~SPTR: ABC-type sugar transport system%2C periplasmic component%3B~manually curated~IMG reference gene:2505283971~PFAM: Bacterial extracellular solute-binding protein gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0675 Thein_0676 Thein_0676 Thein_0676 717533 718426 + binding-protein-dependent transport systems inner membrane component COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: tra:Trad_0587 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2505283972~PFAM: Binding-protein-dependent transport system inner membrane component gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0676 Thein_0677 Thein_0677 Thein_0677 718416 719225 + binding-protein-dependent transport systems inner membrane component COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: dge:Dgeo_2664 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: ABC-type sugar transport system%2C permease component%3B~IMG reference gene:2505283973~PFAM: Binding-protein-dependent transport system inner membrane component gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0677 Thein_0678 Thein_0678 Thein_0678 719226 719969 - glycerophosphoryl diester phosphodiesterase COGs: COG0584 Glycerophosphoryl diester phosphodiesterase~InterPro IPR004129~KEGG: ddf:DEFDS_1578 glycerophosphoryl diester phosphodiesterase~PFAM: glycerophosphoryl diester phosphodiesterase~SPTR: Glycerophosphoryl diester phosphodiesterase%3B~IMG reference gene:2505283974~PFAM: Glycerophosphoryl diester phosphodiesterase family gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0678 Thein_0679 Thein_0679 Thein_0679 720233 721486 - transposase IS116/IS110/IS902 family protein InterPro IPR003346~KEGG: dat:HRM2_46600 transposase for insertion sequences IS116%2C IS110 and IS902 (IS111A/IS1328/IS1533 family protein)~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase (IS111A/IS1328/IS1533 family protein)%3B~IMG reference gene:2505283975~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0679 Thein_0680 Thein_0680 Thein_0680 721882 722307 + putative lipoprotein KEGG: saf:SULAZ_1167 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2505283976 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0680 Thein_0681 Thein_0681 Thein_0681 722585 723505 + integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR004107:IPR002104~KEGG: gur:Gura_4012 tyrosine recombinase XerC~PFAM: integrase family protein%3B integrase domain protein SAM domain protein~SPTR: Tyrosine recombinase XerC%3B~IMG reference gene:2505283977~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family~TIGRFAM: tyrosine recombinase XerC gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0681 Thein_0682 Thein_0682 Thein_0682 723465 723989 + 20S proteasome A and B subunits COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit~InterPro IPR001353~KEGG: sfu:Sfum_0066 ATP-dependent protease peptidase subunit~PFAM: 20S proteasome A and B subunits~SPTR: ATP-dependent protease subunit HslV%3B~IMG reference gene:2505283978~PFAM: Proteasome subunit~TIGRFAM: ATP-dependent protease HslVU%2C peptidase subunit gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0682 Thein_0683 Thein_0683 Thein_0683 723999 725336 + heat shock protein HslVU%2C ATPase subunit HslU COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit~InterPro IPR004491:IPR013093:IPR019489:IPR003593~KEGG: sfu:Sfum_0065 ATP-dependent protease ATP-binding subunit HslU~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like~SMART: AAA ATPase~SPTR: ATP-dependent protease ATPase subunit HslU%3B~TIGRFAM: heat shock protein HslVU%2C ATPase subunit HslU~IMG reference gene:2505283979~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent protease HslVU%2C ATPase subunit gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0683 Thein_0684 Thein_0684 Thein_0684 725340 726641 + Radical SAM domain protein COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR007197~KEGG: sfu:Sfum_1766 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505283980~PFAM: Radical SAM superfamily gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0684 Thein_0685 Thein_0685 Thein_0685 726638 727534 + ErfK/YbiS/YcfS/YnhG family protein COGs: COG1376 conserved hypothetical protein~InterPro IPR005490~KEGG: tye:THEYE_A1296 LysM domain protein~PFAM: ErfK/YbiS/YcfS/YnhG family protein~SPTR: LysM domain protein%3B~manually curated~IMG reference gene:2505283981~PFAM: L%2CD-transpeptidase catalytic domain gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0685 Thein_0686 Thein_0686 Thein_0686 727537 727881 - hypothetical protein KEGG: pca:Pcar_2027 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283982 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0686 Thein_0687 Thein_0687 Thein_0687 728455 728781 + hypothetical protein KEGG: tva:TVAG_193720 viral A-type inclusion protein~SPTR: Viral A-type inclusion protein%2C putative%3B~IMG reference gene:2505283983 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0687 Thein_0688 Thein_0688 Thein_0688 728778 729086 + Anti-sigma-28 factor FlgM family protein InterPro IPR007412~KEGG: sat:SYN_02814 negative regulator of flagellin synthesis~PFAM: Anti-sigma-28 factor FlgM family protein~SPTR: Anti-sigma-28 factor%2C FlgM%3B~IMG reference gene:2505283984~PFAM: Anti-sigma-28 factor%2C FlgM~TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0688 Thein_0689 Thein_0689 Thein_0689 729234 730025 + glycosyl transferase family 2 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis~InterPro IPR001173~KEGG: hsm:HSM_0164 glycosyl transferase family protein~PFAM: glycosyl transferase family 2~SPTR: Glycosyltransferase%2C family 2%3B~IMG reference gene:2505283985~PFAM: Glycosyl transferase family 2 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0689 Thein_0690 Thein_0690 Thein_0690 730037 730807 + glycosyl transferase family 2 InterPro IPR001173~KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase~PFAM: glycosyl transferase family 2~SPTR: Group 2 glycosyl transferase%3B~IMG reference gene:2505283986~PFAM: Glycosyl transferase family 2 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0690 Thein_0691 Thein_0691 Thein_0691 730804 732066 - O-antigen polymerase InterPro IPR007016~KEGG: sdl:Sdel_1811 O-antigen polymerase~PFAM: O-antigen polymerase~SPTR: O-antigen polymerase%3B~IMG reference gene:2505283987~PFAM: O-Antigen ligase gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0691 Thein_0692 Thein_0692 Thein_0692 732063 732923 - hypothetical protein KEGG: plt:Plut_1797 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283988 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0692 Thein_0693 Thein_0693 Thein_0693 732936 734660 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR003439:IPR017940:IPR001140:IPR003593:IPR 017871~KEGG: tye:THEYE_A2094 ABC transporter%2C ATP-binding protein%2C MsbA family~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase~SPTR: ABC transporter%2C ATP-binding protein%2C MsbA family%3B~IMG reference gene:2505283989~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0693 Thein_0694 Thein_0694 Thein_0694 734825 735962 - Peptide chain release factor 2 SPTR: Peptide chain release factor 2%3B~manually curated~IMG reference gene:2505283991~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 2 gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0694 Thein_0695 Thein_0695 Thein_0695 735995 737488 - apolipoprotein N-acyltransferase COGs: COG0815 Apolipoprotein N-acyltransferase~InterPro IPR004563:IPR003010~KEGG: geo:Geob_3094 apolipoprotein N-acyltransferase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: Apolipoprotein N-acyltransferase%3B~TIGRFAM: apolipoprotein N-acyltransferase~IMG reference gene:2505283992~PFAM: Carbon-nitrogen hydrolase~TIGRFAM: apolipoprotein N-acyltransferase gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0695 Thein_0696 Thein_0696 Thein_0696 737488 738294 - CBS domain containing protein COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR005170~KEGG: gme:Gmet_2368 CBS:transporter-associated region~PFAM: CBS domain containing protein%3B transporter-associated region~SPTR: CBS:Transporter-associated region%3B~IMG reference gene:2505283993~PFAM: CBS domain%3B Transporter associated domain gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0696 Thein_0697 Thein_0697 Thein_0697 738287 739378 - VanZ family protein InterPro IPR006976~KEGG: kko:Kkor_0148 VanZ family protein~PFAM: VanZ family protein~SPTR: VanZ family protein%3B~IMG reference gene:2505283994~PFAM: VanZ like family gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0697 Thein_0698 Thein_0698 Thein_0698 739415 740512 + permease YjgP/YjgQ family protein COGs: COG0795 permease~InterPro IPR005495~KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein~PFAM: permease YjgP/YjgQ family protein~SPTR: Permease YjgP/YjgQ family protein%3B~IMG reference gene:2505283995~PFAM: Predicted permease YjgP/YjgQ family gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0698 Thein_0699 Thein_0699 Thein_0699 740513 741586 + permease YjgP/YjgQ family protein COGs: COG0795 permease~InterPro IPR005495~KEGG: dak:DaAHT2_1374 permease YjgP/YjgQ family protein~PFAM: permease YjgP/YjgQ family protein~SPTR: Permease YjgP/YjgQ family protein%3B~IMG reference gene:2505283996~PFAM: Predicted permease YjgP/YjgQ family gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0699 Thein_0700 Thein_0700 Thein_0700 741589 742395 + protein of unknown function DUF178 COGs: COG1427 periplasmic solute-binding protein~InterPro IPR003773~KEGG: dak:DaAHT2_0569 protein of unknown function DUF178~PFAM: protein of unknown function DUF178~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283997~PFAM: Putative periplasminc binding protein (DUF178) gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0700 Thein_0701 Thein_0701 Thein_0701 742395 743264 + polysaccharide deactylase family protein%2C PEP-CTERM locus subfamily COGs: COG0726 xylanase/chitin deacetylase~InterPro IPR002509:IPR014344~KEGG: sde:Sde_0139 FkbH~PFAM: polysaccharide deacetylase~SPTR: Predicted xylanase/chitin deacetylase%3B~TIGRFAM: polysaccharide deactylase family protein%2C PEP-CTERM locus subfamily~IMG reference gene:2505283998~PFAM: Domain of unknown function (DUF3473)%3B Polysaccharide deacetylase~TIGRFAM: polysaccharide deactylase family protein%2C PEP-CTERM locus subfamily gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0701 Thein_0702 Thein_0702 Thein_0702 743310 743519 + Uncharacterized protein family UPF0150 InterPro IPR005357~KEGG: mem:Memar_1245 hypothetical protein~PFAM: Uncharacterised protein family UPF0150~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505283999~PFAM: Uncharacterised protein family (UPF0150) gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0702 Thein_0703 Thein_0703 Thein_0703 743516 743743 + YcfA family protein InterPro IPR012933~KEGG: mem:Memar_1246 YcfA family protein~PFAM: YcfA family protein~SPTR: YcfA family protein%3B~IMG reference gene:2505284000~PFAM: YcfA-like protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0703 Thein_0704 Thein_0704 Thein_0704 743965 744171 + hypothetical protein KEGG: edi:EDI_136720 ribosomal RNA methyltransferase~SPTR: Ribosomal RNA methyltransferase%2C putative%3B~IMG reference gene:2505284001 gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0704 Thein_0705 Thein_0705 Thein_0705 744153 744413 + plasmid stabilization system InterPro IPR007712~KEGG: ana:asl4561 hypothetical protein~PFAM: plasmid stabilization system~SPTR: Asl4561 protein%3B~IMG reference gene:2505284002~PFAM: Plasmid stabilisation system protein gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0705 Thein_0706 Thein_0706 Thein_0706 744802 745809 + FemAB-related protein%2C PEP-CTERM system-associated COGs: COG5653 Protein involved in cellulose biosynthesis (CelD)~InterPro IPR003447:IPR017469~KEGG: geo:Geob_2975 FemAB-related protein%2C PEP-Cterm system-associated~SPTR: Putative uncharacterized protein%3B~TIGRFAM: FemAB-related protein%2C PEP-CTERM system-associated~IMG reference gene:2505284003~PFAM: FemAB family~TIGRFAM: FemAB-related protein%2C PEP-CTERM system-associated gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0706 Thein_0707 Thein_0707 Thein_0707 745806 746990 + sugar transferase%2C PEP-CTERM/EpsH1 system associated COGs: COG0438 Glycosyltransferase~InterPro IPR001296:IPR017521~KEGG: dat:HRM2_19850 glycosyl transferase (group I)~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase (Group I)%3B~TIGRFAM: sugar transferase%2C PEP-CTERM/EpsH1 system associated~IMG reference gene:2505284004~PFAM: Glycosyl transferases group 1~TIGRFAM: sugar transferase%2C PEP-CTERM/EpsH1 system associated gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0707 Thein_0708 Thein_0708 Thein_0708 746974 748101 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: amc:MADE_01302 glycosyl transferase%2C group 1 family protein~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2505284005~PFAM: Glycosyl transferases group 1 gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0708 Thein_0709 Thein_0709 Thein_0709 748201 750081 + asparagine synthase (glutamine-hydrolyzing) COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing)~InterPro IPR017932:IPR000583:IPR001962:IPR006426~KEGG: tkm:TK90_2515 exosortase 1 system-associated amidotransferase 1~PFAM: asparagine synthase%3B glutamine amidotransferase class-II~SPTR: Exosortase 1 system-associated amidotransferase 1%3B~TIGRFAM: asparagine synthase (glutamine-hydrolyzing)~IMG reference gene:2505284006~PFAM: Asparagine synthase~TIGRFAM: asparagine synthase (glutamine-hydrolyzing) gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0709 Thein_0710 Thein_0710 Thein_0710 750071 751186 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: pat:Patl_1197 glycosyl transferase%2C group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2505284007~PFAM: Glycosyl transferases group 1 gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0710 Thein_0711 Thein_0711 Thein_0711 751453 752250 - Xylose isomerase domain-containing protein TIM barrel COGs: COG1082 Sugar phosphate isomerase/epimerase~InterPro IPR012307~KEGG: sfu:Sfum_0023 xylose isomerase domain-containing protein~PFAM: Xylose isomerase domain-containing protein TIM barrel~SPTR: Xylose isomerase domain protein TIM barrel%3B~IMG reference gene:2505284008~PFAM: Xylose isomerase-like TIM barrel gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0711 Thein_0712 Thein_0712 Thein_0712 752247 753368 - DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: nis:NIS_1315 aminotransferase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Aminotransferase%3B~IMG reference gene:2505284009~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0712 Thein_0713 Thein_0713 Thein_0713 753512 755032 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis~InterPro IPR003362:IPR017472:IPR017475~KEGG: hya:HY04AAS1_0831 undecaprenyl-phosphate galactose phosphotransferase%2C WbaP~PFAM: sugar transferase~PRIAM: Undecaprenyl-phosphate galactose phosphotransferase~SPTR: Undecaprenyl-phosphate galactosephosphotransferase%3B~TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase%3B Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP~IMG reference gene:2505284010~PFAM: Bacterial sugar transferase~TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase%3B Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0713 Thein_0714 Thein_0714 Thein_0714 755215 756762 - AAA-ATPase InterPro IPR018631:IPR012547~KEGG: hya:HY04AAS1_1317 protein of unknown function DUF1703~PFAM: AAA-ATPase-like%3B protein of unknown function DUF1703~SPTR: AAA-ATPase-like protein%3B~IMG reference gene:2505284011~PFAM: Protein of unknown function (DUF1703)%3B Predicted AAA-ATPase gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0714 Thein_0715 Thein_0715 Thein_0715 756820 757095 - competence protein ComEA helix-hairpin-helix repeat protein COGs: COG1555 DNA uptake protein and related DNA-binding protein~InterPro IPR000445:IPR003583:IPR004509~KEGG: tai:Taci_1122 competence protein ComEA helix-hairpin-helix repeat protein~PFAM: helix-hairpin-helix motif~SMART: Helix-hairpin-helix DNA-binding class 1~SPTR: Competence protein ComEA helix-hairpin-helix repeat protein%3B~TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein~IMG reference gene:2505284012~PFAM: Helix-hairpin-helix motif~TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region%3B comEA protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0715 Thein_0716 Thein_0716 Thein_0716 757442 757624 + hypothetical protein IMG reference gene:2505284013 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0716 Thein_0717 Thein_0717 Thein_0717 757621 758589 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505284014~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0717 Thein_0718 Thein_0718 Thein_0718 759104 760336 + hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: tye:THEYE_A0178 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284015 gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0718 Thein_0719 Thein_0719 Thein_0719 760395 761942 - AAA-ATPase InterPro IPR018631:IPR012547~KEGG: saf:SULAZ_0094 conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain~PFAM: AAA-ATPase-like%3B protein of unknown function DUF1703~SPTR: AAA-ATPase-like protein%3B~IMG reference gene:2505284016~PFAM: Protein of unknown function (DUF1703)%3B Predicted AAA-ATPase gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0719 Thein_0720 Thein_0720 Thein_0720 762219 762623 - PilT protein domain protein InterPro IPR002716~KEGG: bcv:Bcav_2739 PilT protein domain protein~PFAM: PilT protein domain protein~SPTR: PilT protein domain protein%3B~IMG reference gene:2505284017~PFAM: PIN domain gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0720 Thein_0721 Thein_0721 Thein_0721 762607 762843 - transcriptional regulator%2C AbrB family InterPro IPR007159:IPR006339~KEGG: bcv:Bcav_2738 transcriptional regulator%2C AbrB family~PFAM: SpoVT/AbrB domain-containing protein~SPTR: Transcriptional regulator%2C AbrB family%3B~TIGRFAM: transcriptional regulator%2C AbrB family~IMG reference gene:2505284018~PFAM: SpoVT / AbrB like domain~TIGRFAM: looped-hinge helix DNA binding domain%2C AbrB family gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0721 Thein_0722 Thein_0722 Thein_0722 762977 763192 - hypothetical protein KEGG: apo:Arcpr_0700 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284019 gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0722 Thein_0723 Thein_0723 Thein_0723 763204 763635 - PilT protein domain protein InterPro IPR002716~KEGG: mhu:Mhun_2151 PilT protein-like~PFAM: PilT protein domain protein~SPTR: PilT protein-like%3B~IMG reference gene:2505284020~PFAM: PIN domain gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0723 Thein_0724 Thein_0724 Thein_0724 763619 763846 - SpoVT/AbrB domain-containing protein InterPro IPR007159~KEGG: sfu:Sfum_2576 AbrB family transcriptional regulator~PFAM: SpoVT/AbrB domain-containing protein~SPTR: Transcriptional regulator%2C AbrB family%3B~IMG reference gene:2505284021~PFAM: SpoVT / AbrB like domain~TIGRFAM: looped-hinge helix DNA binding domain%2C AbrB family gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0724 Thein_0725 Thein_0725 Thein_0725 764310 765149 - dTDP-4-dehydrorhamnose reductase COGs: COG1091 dTDP-4-dehydrorhamnose reductase~InterPro IPR005913~KEGG: sul:SYO3AOP1_1531 dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase~PRIAM: dTDP-4-dehydrorhamnose reductase~SPTR: dTDP-4-dehydrorhamnose reductase%3B~TIGRFAM: dTDP-4-dehydrorhamnose reductase~IMG reference gene:2505284022~PFAM: RmlD substrate binding domain~TIGRFAM: dTDP-4-dehydrorhamnose reductase gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0725 Thein_0726 Thein_0726 Thein_0726 765322 766317 - dTDP-glucose 4%2C6-dehydratase COGs: COG1088 dTDP-D-glucose 4 6-dehydratase~InterPro IPR001509:IPR005888~KEGG: saf:SULAZ_0364 dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: dTDP-glucose 4%2C6-dehydratase%3B~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~IMG reference gene:2505284023~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: dTDP-glucose 4%2C6-dehydratase gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0726 Thein_0727 Thein_0727 Thein_0727 766358 766909 - dTDP-4-dehydrorhamnose 3%2C5-epimerase COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase~InterPro IPR000888~KEGG: saf:SULAZ_0363 dTDP-4-dehydrorhamnose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 35-epimerase related~PRIAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~SPTR: dTDP-4-dehydrorhamnose 3%2C5-epimerase%3B~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~IMG reference gene:2505284024~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0727 Thein_0728 Thein_0728 Thein_0728 766964 767320 - hypothetical protein KEGG: gur:Gura_3825 hypothetical protein~SPTR: S23 ribosomal protein%3B~IMG reference gene:2505284025~PFAM: S23 ribosomal protein gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0728 Thein_0729 Thein_0729 Thein_0729 767370 768251 - glucose-1-phosphate thymidylyltransferase COGs: COG1209 dTDP-glucose pyrophosphorylase~InterPro IPR005835:IPR005907~KEGG: saf:SULAZ_0360 glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase~SPTR: Glucose-1-phosphate thymidylyltransferase%3B~TIGRFAM: glucose-1-phosphate thymidylyltransferase~IMG reference gene:2505284026~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase%2C short form gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0729 Thein_0730 Thein_0730 Thein_0730 768255 769355 - protein of unknown function DUF1972 COGs: COG0438 Glycosyltransferase~InterPro IPR015393:IPR001296~KEGG: bvu:BVU_2400 glycosyl transferase family protein~PFAM: protein of unknown function DUF1972%3B glycosyl transferase group 1~SPTR: Glycosyltransferase-like%3B~IMG reference gene:2505284027~PFAM: Domain of unknown function (DUF1972)%3B Glycosyl transferases group 1 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0730 Thein_0731 Thein_0731 Thein_0731 769355 770851 - Ribosomal protein L35 InterPro IPR021137~KEGG: bcg:BCG9842_B1717 spore coat polysaccharide biosynthesis protein SpsB~PFAM: Ribosomal protein L35~SPTR: Spore coat polysaccharide biosynthesis protein spsB%3B~IMG reference gene:2505284028 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0731 Thein_0732 Thein_0732 Thein_0732 770829 772175 - hypothetical protein KEGG: bmd:BMD_5212 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284029 gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0732 Thein_0733 Thein_0733 Thein_0733 772179 773021 - sulfotransferase InterPro IPR000863~KEGG: amr:AM1_5717 sulfotransferase~PFAM: sulfotransferase~SPTR: Sulfotransferase domain superfamily%3B~IMG reference gene:2505284030~PFAM: Sulfotransferase domain gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0733 Thein_0734 Thein_0734 Thein_0734 773011 774303 - polysaccharide biosynthesis protein InterPro IPR002797~KEGG: clj:CLJU_c05530 putative polysaccharide biosynthesis protein~PFAM: polysaccharide biosynthesis protein~SPTR: Polysaccharide biosynthesis protein%3B~IMG reference gene:2505284031~PFAM: Polysaccharide biosynthesis protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0734 Thein_0735 Thein_0735 Thein_0735 774296 775360 - N-acetylneuraminate synthase COGs: COG2089 Sialic acid synthase~InterPro IPR006190:IPR013132:IPR013974~KEGG: dvu:DVU0349 NeuB family protein~PFAM: N-acetylneuraminic acid synthase domain%3B SAF domain protein~PRIAM: N-acetylneuraminate synthase~SPTR: NeuB family protein%3B~IMG reference gene:2505284032~PFAM: SAF domain%3B NeuB family gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0735 Thein_0736 Thein_0736 Thein_0736 775353 777002 - N-acylneuraminate cytidylyltransferase COGs: COG1083 CMP-N-acetylneuraminic acid synthetase~InterPro IPR003329~KEGG: mru:mru_1876 CMP-N-acetylneuraminic acid synthetase NeuA~PFAM: acylneuraminate cytidylyltransferase~PRIAM: N-acylneuraminate cytidylyltransferase~SPTR: CMP-N-acetylneuraminic acid synthetase NeuA%3B~IMG reference gene:2505284033~PFAM: Cytidylyltransferase%3B Glycosyltransferase family 28 C-terminal domain gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0736 Thein_0737 Thein_0737 Thein_0737 776938 777165 - pseudogene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0737 Thein_0738 Thein_0738 Thein_0738 777224 777706 - hypothetical protein KEGG: bpf:BpOF4_06585 S23 ribosomal~SPTR: S23 ribosomal%3B~IMG reference gene:2505284035~PFAM: S23 ribosomal protein gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0738 Thein_0739 Thein_0739 Thein_0739 777737 778183 - PilT protein domain protein COGs: COG5573 nucleic-acid-binding protein contains PIN domain~InterPro IPR002716~KEGG: ana:alr3622 hypothetical protein~PFAM: PilT protein domain protein~SPTR: Alr3622 protein%3B~IMG reference gene:2505284036~PFAM: PIN domain gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0739 Thein_0740 Thein_0740 Thein_0740 778170 778373 - hypothetical protein KEGG: saf:SULAZ_0340 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284037 gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0740 Thein_0741 Thein_0741 Thein_0741 778599 779669 - AAA ATPase COGs: COG1672 ATPase (AAA+ superfamily)~InterPro IPR003593~KEGG: mja:MJ1659 hypothetical protein~SMART: AAA ATPase~SPTR: Uncharacterized ATP-binding protein MJ1659%3B~IMG reference gene:2505284038~PFAM: Archaeal ATPase gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0741 Thein_0742 Thein_0742 Thein_0742 779666 779938 - S23 ribosomal protein KEGG: cpb:Cphamn1_1908 S23 ribosomal protein~SPTR: S23 ribosomal protein%3B~IMG reference gene:2505284039~PFAM: S23 ribosomal protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0742 Thein_0743 Thein_0743 Thein_0743 780392 781150 + protein of unknown function DUF28 COGs: COG0217 conserved hypothetical protein~InterPro IPR002876~KEGG: sfu:Sfum_0996 hypothetical protein~PFAM: protein of unknown function DUF28~SPTR: UPF0082 protein Sfum_0996%3B~IMG reference gene:2505284040~PFAM: Domain of unknown function DUF28~TIGRFAM: DNA-binding regulatory protein%2C YebC/PmpR family gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0743 Thein_0744 Thein_0744 Thein_0744 781150 781626 + crossover junction endodeoxyribonuclease RuvC COGs: COG0817 Holliday junction resolvasome endonuclease subunit~InterPro IPR002176~KEGG: tgr:Tgr7_2236 crossover junction endodeoxyribonuclease~PFAM: Crossover junction endodeoxyribonuclease RuvC~PRIAM: Crossover junction endodeoxyribonuclease~SPTR: Crossover junction endodeoxyribonuclease ruvC%3B~TIGRFAM: crossover junction endodeoxyribonuclease RuvC~IMG reference gene:2505284041~PFAM: Crossover junction endodeoxyribonuclease RuvC~TIGRFAM: crossover junction endodeoxyribonuclease RuvC gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0744 Thein_0745 Thein_0745 Thein_0745 781610 782176 + Holliday junction DNA helicase RuvA COGs: COG0632 Holliday junction resolvasome DNA-binding subunit~InterPro IPR000085:IPR013849:IPR011114:IPR003583~KEGG: tye:THEYE_A0877 Holliday junction DNA helicase RuvA~PFAM: RuvA domain protein%3B DNA recombination protein RuvA domain I~SPTR: Holliday junction ATP-dependent DNA helicase ruvA%3B~TIGRFAM: Holliday junction DNA helicase RuvA~IMG reference gene:2505284042~PFAM: RuvA%2C C-terminal domain%3B RuvA N terminal domain~TIGRFAM: Holliday junction DNA helicase%2C RuvA subunit gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0745 Thein_0746 Thein_0746 Thein_0746 782169 783137 + Holliday junction DNA helicase RuvB COGs: COG2255 Holliday junction resolvasome helicase subunit~InterProIPR004605:IPR008823:IPR008824:IPR003959:IPR 003593~KEGG: chy:CHY_1522 Holliday junction DNA helicase RuvB~PFAM: AAA ATPase central domain protein%3B Holliday junction DNA helicase RuvB domain~SMART: AAA ATPase~SPTR: Holliday junction ATP-dependent DNA helicase ruvB%3B~TIGRFAM: Holliday junction DNA helicase RuvB~IMG reference gene:2505284043~PFAM: Holliday junction DNA helicase ruvB C-terminus%3B Holliday junction DNA helicase ruvB N-terminus~TIGRFAM: Holliday junction DNA helicase%2C RuvB subunit gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0746 Thein_0747 Thein_0747 Thein_0747 783121 783975 + 3-methyl-2-oxobutanoatehydroxymethyltransferase COGs: COG0413 Ketopantoate hydroxymethyltransferase~InterPro IPR003700~KEGG: adg:Adeg_1877 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase~PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase%3B~TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~IMG reference gene:2505284044~PFAM: Ketopantoate hydroxymethyltransferase~TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0747 Thein_0748 Thein_0748 Thein_0748 784007 786274 - methyl-viologen-reducing hydrogenase delta subunit COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterProIPR017896:IPR013027:IPR006076:IPR003813:IPR 017900~KEGG: apo:Arcpr_0774 methyl-viologen-reducing hydrogenase delta subunit~PFAM: methyl-viologen-reducing hydrogenase delta subunit%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B FAD dependent oxidoreductase~SPTR: Methyl-viologen-reducing hydrogenase delta subunit%3B~IMG reference gene:2505284045~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit%3B Pyridine nucleotide-disulphide oxidoreductase%3B 4Fe-4S binding domain%3B FAD dependent oxidoreductase gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0748 Thein_0749 Thein_0749 Thein_0749 786753 788873 - FG-GAP repeat protein InterPro IPR013517~KEGG: afu:AF1946 cysteine proteinase%2C putative~PFAM: FG-GAP repeat protein~SPTR: PKD domain protein%3B~IMG reference gene:2505284046~PFAM: FG-GAP repeat gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0749 Thein_0750 Thein_0750 Thein_0750 789408 789998 + CDP-alcohol phosphatidyltransferase COGs: COG0558 Phosphatidylglycerophosphate synthase~InterPro IPR000462~KEGG: mem:Memar_0174 CDP-alcohol phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: CDP-alcohol phosphatidyltransferase%3B~IMG reference gene:2505284047~PFAM: CDP-alcohol phosphatidyltransferase gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0750 Thein_0751 Thein_0751 Thein_0751 789973 790845 + Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase COGs: COG0313 methyltransferase~InterPro IPR000878:IPR008189~KEGG: chy:CHY_0055 hypothetical protein~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284048~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase%2C YraL family gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0751 Thein_0752 Thein_0752 Thein_0752 790817 791893 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis~InterPro IPR016425:IPR004588~KEGG: dak:DaAHT2_0253 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~PFAM: IspG family protein~SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%3B~TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~IMG reference gene:2505284049~PFAM: GcpE protein~TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0752 Thein_0753 Thein_0753 Thein_0753 791948 792361 + pseudogene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0753 Thein_0754 Thein_0754 Thein_0754 792423 793529 + Myo-inositol-1-phosphate synthase COGs: COG1260 Myo-inositol-1-phosphate synthase~InterPro IPR002587:IPR013021~KEGG: aae:aq_1763 hypothetical protein~PFAM: Myo-inositol-1-phosphate synthase%3B Myo-inositol-1-phosphate synthase GAPDH domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284051~PFAM: Myo-inositol-1-phosphate synthase gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0754 Thein_0755 Thein_0755 Thein_0755 793540 794703 + LL-diaminopimelate aminotransferase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839:IPR019881~KEGG: tal:Thal_1518 LL-diaminopimelate aminotransferase~PFAM: aminotransferase class I and II~SPTR: LL-diaminopimelate aminotransferase%3B~TIGRFAM: LL-diaminopimelate aminotransferase~IMG reference gene:2505284052~PFAM: Aminotransferase class I and II~TIGRFAM: LL-diaminopimelate aminotransferase gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0755 Thein_0756 Thein_0756 Thein_0756 794715 795206 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase~InterPro IPR000550~KEGG: ttj:TTHA1749 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (FolK)~PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK~SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase%3B~TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase~manually curated~IMG reference gene:2505284053~PFAM: 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)~TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0756 Thein_0757 Thein_0757 Thein_0757 795194 795475 + YHS domain-containing protein InterPro IPR007029:IPR011017~KEGG: pca:Pcar_0249 hypothetical protein~PFAM: YHS domain-containing protein~SMART: TRASH domain-containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284054~PFAM: YHS domain gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0757 Thein_0758 Thein_0758 Thein_0758 795490 795981 + Lytic transglycosylase catalytic COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains)~InterPro IPR008258:IPR000189~KEGG: nde:NIDE3738 putative lytic murein transglycosylase~PFAM: Lytic transglycosylase catalytic~SPTR: Lytic transglycosylase%2C catalytic%3B~IMG reference gene:2505284055~PFAM: Transglycosylase SLT domain gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0758 Thein_0759 Thein_0759 Thein_0759 796084 796296 + hypothetical protein KEGG: bav:BAV0393 hypothetical protein~SPTR: Putative phage-related protein%3B~IMG reference gene:2505284056 gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0759 Thein_0760 Thein_0760 Thein_0760 796293 797075 - GTP cyclohydrolase I COGs: COG1469 conserved hypothetical protein~InterPro IPR003801~KEGG: pca:Pcar_2981 putative GTP cyclohydrolase~PFAM: protein of unknown function DUF198~PRIAM: GTP cyclohydrolase I~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284057~PFAM: Uncharacterized ACR%2C COG1469~TIGRFAM: TIGR00294 family protein gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0760 Thein_0761 Thein_0761 Thein_0761 797068 797829 - cobyrinic acid ac-diamide synthase COGs: COG3640 CO dehydrogenase maturation factor~InterPro IPR014433~KEGG: dak:DaAHT2_0979 cobyrinic acid ac-diamide synthase~SPTR: Cobyrinic acid a%2Cc-diamide synthase%3B~IMG reference gene:2505284058~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0761 Thein_0762 Thein_0762 Thein_0762 797969 799684 + prolyl-tRNA synthetase COGs: COG0442 Prolyl-tRNA synthetase~InterProIPR006195:IPR002314:IPR007214:IPR004154:IPR 002316:IPR004500~KEGG: gur:Gura_2798 prolyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B YbaK/prolyl-tRNA synthetase associated region%3B Anticodon-binding domain protein~SPTR: Prolyl-tRNA synthetase%3B~TIGRFAM: prolyl-tRNA synthetase~IMG reference gene:2505284059~PFAM: YbaK / prolyl-tRNA synthetases associated domain%3B Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: prolyl-tRNA synthetase%2C family II gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0762 Thein_0763 Thein_0763 Thein_0763 799677 800417 + hemolysin A COGs: COG1189 rRNA methylase~InterPro IPR002942:IPR002877:IPR004538~KEGG: gme:Gmet_1222 hemolysin A~PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: Hemolysin A%3B~TIGRFAM: hemolysin A~IMG reference gene:2505284060~PFAM: S4 domain%3B FtsJ-like methyltransferase~TIGRFAM: hemolysin TlyA family protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0763 Thein_0764 Thein_0764 Thein_0764 800486 801202 + CBS domain containing protein COGs: COG0517 FOG: CBS domain~InterPro IPR000644~KEGG: dvl:Dvul_0535 CBS domain-containing protein~PFAM: CBS domain containing protein~SMART: CBS domain containing protein~SPTR: CBS domain protein/ACT domain protein%3B~IMG reference gene:2505284061~PFAM: CBS domain gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0764 Thein_0765 Thein_0765 Thein_0765 801171 803195 - penicillin-binding protein%2C 1A family COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein)~InterPro IPR001264:IPR001460:IPR011816~KEGG: dak:DaAHT2_0246 penicillin-binding protein%2C 1A family~PFAM: glycosyl transferase family 51%3B penicillin-binding protein transpeptidase~PRIAM: Peptidoglycan glycosyltransferase~SPTR: Penicillin-binding protein 1A%3B~TIGRFAM: penicillin-binding protein%2C 1A family~IMG reference gene:2505284062~PFAM: Penicillin binding protein transpeptidase domain%3B Transglycosylase~TIGRFAM: penicillin-binding protein%2C 1A family gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0765 Thein_0766 Thein_0766 Thein_0766 803188 804876 - ABC transporter%2C ATPase%2C predicted COGs: COG3044 ATPase of the ABC class~InterPro IPR019195~KEGG: cyh:Cyan8802_2553 ATPase family protein~PFAM: ABC transporter%2C ATPase%2C predicted~SPTR: ATPase family protein%3B~IMG reference gene:2505284063~PFAM: Predicted ATPase of the ABC class gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0766 Thein_0767 Thein_0767 Thein_0767 804878 805153 - hypothetical protein KEGG: dde:Dde_1000 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284064 gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0767 Thein_0768 Thein_0768 Thein_0768 805257 806429 + arginine biosynthesis bifunctional protein ArgJ COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase)~InterPro IPR002813~KEGG: dal:Dalk_1420 arginine biosynthesis bifunctional protein ArgJ~PFAM: arginine biosynthesis protein ArgJ~PRIAM: Amino-acid N-acetyltransferase~SPTR: Arginine biosynthesis bifunctional protein ArgJ%3B~TIGRFAM: arginine biosynthesis bifunctional protein ArgJ~IMG reference gene:2505284065~PFAM: ArgJ family~TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0768 Thein_0769 Thein_0769 Thein_0769 806410 806598 + hypothetical protein KEGG: dat:HRM2_46870 metal-binding protein~SPTR: Metal-binding protein%3B~IMG reference gene:2505284066 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0769 Thein_0770 Thein_0770 Thein_0770 806598 807353 + stationary-phase survival protein SurE COGs: COG0496 acid phosphatase~InterPro IPR002828~KEGG: sfu:Sfum_1169 stationary-phase survival protein SurE~PFAM: Survival protein SurE~SPTR: 5'-nucleotidase surE%3B~TIGRFAM: stationary-phase survival protein SurE~IMG reference gene:2505284067~PFAM: Survival protein SurE~TIGRFAM: 5'/3'-nucleotidase SurE gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0770 Thein_0771 Thein_0771 Thein_0771 807432 807668 + hypothetical protein KEGG: sii:LD85_2436 helix-turn-helix%2C type 11 domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284068 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0771 Thein_0772 Thein_0772 Thein_0772 808148 809233 + Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR017200:IPR007197:IPR006638~KEGG: sfu:Sfum_3058 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505284069~PFAM: Radical SAM superfamily~TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ2%3B radical SAM additional 4Fe4S-binding domain gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0772 Thein_0773 Thein_0773 Thein_0773 809246 809584 - hypothetical protein KEGG: sto:ST2336 hypothetical protein~SPTR: Putative uncharacterized protein ST2336%3B~IMG reference gene:2505284070 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0773 Thein_0774 Thein_0774 Thein_0774 809722 811218 + cysteinyl-tRNA synthetase COGs: COG0215 Cysteinyl-tRNA synthetase~InterPro IPR015803:IPR015273:IPR002308~KEGG: sfu:Sfum_1634 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase class Ia %3B Cysteinyl-tRNA synthetase class Ia DALR~PRIAM: Cysteine--tRNA ligase~SPTR: Cysteinyl-tRNA synthetase%3B~TIGRFAM: cysteinyl-tRNA synthetase~manually curated~IMG reference gene:2505284071~PFAM: tRNA synthetases class I (C) catalytic domain%3B DALR domain~TIGRFAM: cysteinyl-tRNA synthetase gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0774 Thein_0775 Thein_0775 Thein_0775 811202 811735 + Colicin V production protein InterPro IPR003825~KEGG: dat:HRM2_35760 putative colicin V production protein-like protein~PFAM: Colicin V production protein~SPTR: Putative colicin V production protein-like protein%3B~IMG reference gene:2505284072~PFAM: Colicin V production protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0775 Thein_0776 Thein_0776 Thein_0776 811719 812516 + MazG family protein COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain~InterPro IPR004518:IPR011551~KEGG: gsu:GSU1174 nucleoside triphosphate pyrophosphohydrolase~PFAM: MazG nucleotide pyrophosphohydrolase~SPTR: MazG protein%3B~TIGRFAM: MazG family protein~IMG reference gene:2505284073~PFAM: MazG nucleotide pyrophosphohydrolase domain~TIGRFAM: MazG family protein gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0776 Thein_0777 Thein_0777 Thein_0777 812513 813685 - ATP dependent DNA ligase COGs: COG1423 ATP-dependent DNA ligase homolog of eukaryotic ligase III~InterPro IPR012310:IPR001072~KEGG: tal:Thal_0814 ATP dependent DNA ligase~PFAM: ATP dependent DNA ligase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284074~PFAM: ATP dependent DNA ligase domain~TIGRFAM: RNA ligase%2C Pab1020 family gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0777 Thein_0778 Thein_0778 Thein_0778 813678 814727 - RNA 3'-phosphate cyclase COGs: COG0430 RNA 3'-terminal phosphate cyclase~InterPro IPR000228:IPR013796:IPR017770~KEGG: gur:Gura_1665 RNA-3'-phosphate cyclase~PFAM: RNA 3'-terminal phosphate cyclase%3B RNA 3'-terminal phosphate cyclase insert region~PRIAM: RNA-3'-phosphate cyclase~SPTR: Probable RNA 3'-terminal phosphate cyclase%3B~TIGRFAM: RNA 3'-phosphate cyclase~IMG reference gene:2505284075~PFAM: RNA 3'-terminal phosphate cyclase (RTC)%2C insert domain%3B RNA 3'-terminal phosphate cyclase~TIGRFAM: RNA 3'-phosphate cyclase gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0778 Thein_0779 Thein_0779 Thein_0779 814724 815686 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterProIPR003439:IPR013563:IPR003593:IPR017871:IPR 010066~KEGG: tle:Tlet_0198 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Oligopeptide/dipeptide ABC transporter%2C ATPase subunit%3B~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~IMG reference gene:2505284076~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0779 Thein_0780 Thein_0780 Thein_0780 816162 816344 + hypothetical protein IMG reference gene:2505284077 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0780 Thein_0781 Thein_0781 Thein_0781 816341 817310 + hypothetical protein KEGG: sul:SYO3AOP1_1224 transposase IS116/IS110/IS902 family protein~SPTR: Putative transposase%3B~manually curated~IMG reference gene:2505284078~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0781 Thein_0782 Thein_0782 Thein_0782 817433 817840 - hypothetical protein KEGG: ddf:DEFDS_0396 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284079~PFAM: PIN domain gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0782 Thein_0783 Thein_0783 Thein_0783 817818 818054 - transcriptional regulator%2C AbrB family InterPro IPR007159:IPR006339~KEGG: ddf:DEFDS_0395 hypothetical protein~PFAM: SpoVT/AbrB domain-containing protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: transcriptional regulator%2C AbrB family~IMG reference gene:2505284080~PFAM: SpoVT / AbrB like domain~TIGRFAM: looped-hinge helix DNA binding domain%2C AbrB family gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0783 Thein_0784 Thein_0784 Thein_0784 818112 819065 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR003439:IPR013563:IPR003593:IPR017871:IPR 010066~KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Oligopeptide ABC transporter ATP-binding protein%3B~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~IMG reference gene:2505284081~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0784 Thein_0785 Thein_0785 Thein_0785 819125 819865 + Rhomboid family protein COGs: COG0705 membrane protein~InterPro IPR002610~KEGG: ddf:DEFDS_0217 rhomboid family protein~PFAM: Rhomboid family protein~SPTR: Rhomboid family protein%3B~IMG reference gene:2505284082~PFAM: Rhomboid family gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0785 Thein_0786 Thein_0786 Thein_0786 819877 820728 + hypothetical protein COGs: COG0616 Periplasmic serine protease (ClpP class)~KEGG: ddf:DEFDS_0218 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284083~PFAM: Serine dehydrogenase proteinase gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0786 Thein_0787 Thein_0787 Thein_0787 820763 821863 - Conserved TM helix repeat-containing protein InterPro IPR008910~KEGG: par:Psyc_2091 hypothetical protein~PFAM: Conserved TM helix repeat-containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284084~PFAM: Conserved TM helix gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0787 Thein_0788 Thein_0788 Thein_0788 822227 822715 - peptidylprolyl isomerase FKBP-type COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2~InterPro IPR001179~KEGG: ilo:IL0821 FKBP-type peptidyl-prolyl cis-trans isomerase~PFAM: peptidylprolyl isomerase FKBP-type~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2505284085~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0788 Thein_0789 Thein_0789 Thein_0789 823131 823340 + hypothetical protein KEGG: sat:SYN_01416 putative cytoplasmic protein~SPTR: Hypothetical cytosolic protein%3B~IMG reference gene:2505284086 gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0789 Thein_0790 Thein_0790 Thein_0790 823359 825431 - 4-alpha-glucanotransferase COGs: COG1449 Alpha-amylase/alpha-mannosidase~InterPro IPR015178:IPR004300:IPR015179~KEGG: tsi:TSIB_0455 4-alpha-glucanotransferase~PFAM: glycoside hydrolase family 57%3B Domain of unknown function DUF1925%3B Domain of unknown function DUF1926~PRIAM: 4-alpha-glucanotransferase~SPTR: Cyclodextrin glucanotransferase%3B~IMG reference gene:2505284087~PFAM: Domain of unknown function (DUF1925)%3B Glycosyl hydrolase family 57%3B Domain of unknown function (DUF1926) gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0790 Thein_0791 Thein_0791 Thein_0791 825447 826376 - quinolinate synthetase complex%2C A subunit COGs: COG0379 Quinolinate synthase~InterPro IPR003473~KEGG: gur:Gura_0199 quinolinate synthetase~PFAM: Quinolinate synthetase A~PRIAM: Quinolinate synthase~SPTR: Quinolinate synthase A%3B~TIGRFAM: quinolinate synthetase complex%2C A subunit~IMG reference gene:2505284088~PFAM: Quinolinate synthetase A protein~TIGRFAM: quinolinate synthetase complex%2C A subunit gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0791 Thein_0792 Thein_0792 Thein_0792 826381 827034 - outer membrane lipoprotein carrier protein LolA COGs: COG2834 Outer membrane lipoprotein-sorting protein~InterPro IPR018323:IPR004564~KEGG: dak:DaAHT2_0277 outer membrane lipoprotein carrier protein LolA~PFAM: outer membrane lipoprotein carrier protein LolA~SPTR: Outer membrane lipoprotein carrier protein LolA%3B~TIGRFAM: outer membrane lipoprotein carrier protein LolA~IMG reference gene:2505284089~PFAM: Outer membrane lipoprotein carrier protein LolA~TIGRFAM: periplasmic chaperone LolA gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0792 Thein_0793 Thein_0793 Thein_0793 826979 829075 - cell division protein FtsK/SpoIIIE COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein~InterPro IPR002543:IPR018541:IPR003593~KEGG: dal:Dalk_3204 cell divisionFtsK/SpoIIIE~PFAM: cell divisionFtsK/SpoIIIE%3B DNA translocase ftsK gamma~SMART: AAA ATPase~SPTR: Cell divisionFtsK/SpoIIIE%3B~IMG reference gene:2505284090~PFAM: Ftsk gamma domain%3B FtsK/SpoIIIE family%3B EAP30/Vps36 family gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0793 Thein_0794 Thein_0794 Thein_0794 829079 829582 - hypothetical protein KEGG: rpe:RPE_2580 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284091 gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0794 Thein_0795 Thein_0795 Thein_0795 829742 831058 + peptidase U62 modulator of DNA gyrase COGs: COG0312 Zn-dependent protease and their inactivated homologs~InterPro IPR002510~KEGG: pth:PTH_1159 Zn-dependent protease~PFAM: peptidase U62 modulator of DNA gyrase~SPTR: Predicted Zn-dependent protease and their inactivated homologs%3B~IMG reference gene:2505284092~PFAM: Putative modulator of DNA gyrase gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0795 Thein_0796 Thein_0796 Thein_0796 831195 831602 + putative signal transduction protein with CBS domains COGs: COG2524 transcriptional regulator protein~InterPro IPR000644~KEGG: mbu:Mbur_1884 CBS domain-containing protein~PFAM: CBS domain containing protein~SMART: CBS domain containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284093~PFAM: CBS domain gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0796 Thein_0797 Thein_0797 Thein_0797 831618 832397 + hypothetical protein KEGG: gsu:GSU1874 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284094 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0797 Thein_0798 Thein_0798 Thein_0798 832815 833243 + Nucleoside-diphosphate kinase COGs: COG0105 Nucleoside diphosphate kinase~InterPro IPR001564~KEGG: dvl:Dvul_0925 nucleoside diphosphate kinase~PFAM: nucleoside diphosphate kinase~PRIAM: Nucleoside-diphosphate kinase~SMART: nucleoside diphosphate kinase~SPTR: Nucleoside diphosphate kinase%3B~IMG reference gene:2505284095~PFAM: Nucleoside diphosphate kinase gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0798 Thein_0799 Thein_0799 Thein_0799 833240 834193 + thiamine-monophosphate kinase COGs: COG0611 Thiamine monophosphate kinase~InterPro IPR006283:IPR000728:IPR010918~KEGG: dak:DaAHT2_1499 thiamine-monophosphate kinase~PFAM: AIR synthase related protein%3B AIR synthase related protein domain protein~PRIAM: Thiamine-phosphate kinase~SPTR: Thiamine-monophosphate kinase%3B~TIGRFAM: thiamine-monophosphate kinase~IMG reference gene:2505284096~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: thiamine-monophosphate kinase gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0799 Thein_0800 Thein_0800 Thein_0800 834455 836392 + protein of unknown function DUF505 COGs: COG1542 conserved hypothetical protein~InterPro IPR007548~KEGG: ttr:Tter_1487 protein of unknown function DUF505~PFAM: protein of unknown function DUF505~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284097~PFAM: Protein of unknown function (DUF505) gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0800 Thein_0801 Thein_0801 Thein_0801 836392 837114 + hypothetical protein KEGG: aae:aq_755 hypothetical protein~SPTR: Uncharacterized protein aq_755%3B~IMG reference gene:2505284098 gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0801 Thein_0802 Thein_0802 Thein_0802 837331 838116 + ParB domain protein nuclease InterPro IPR003115:IPR013838~KEGG: aae:aq_324 hypothetical protein~PFAM: ParB domain protein nuclease~SMART: ParB domain protein nuclease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284099~PFAM: ParB-like nuclease domain gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0802 Thein_0803 Thein_0803 Thein_0803 838106 839278 + protein of unknown function DUF52 COGs: COG1355 dioxygenase~InterPro IPR002737~KEGG: sfu:Sfum_0075 hypothetical protein~PFAM: protein of unknown function DUF52~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284100~PFAM: Memo-like protein gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0803 Thein_0804 Thein_0804 Thein_0804 839271 839795 + 4Fe-4S ferredoxin%2C iron-sulfur binding protein COGs: COG1150 Heterodisulfide reductase subunit C~InterPro IPR017896:IPR017900~KEGG: slp:Slip_2075 4Fe-4S ferredoxin%2C iron-sulfur binding protein~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding protein%3B~manually curated~IMG reference gene:2505284101 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0804 Thein_0805 Thein_0805 Thein_0805 839783 840610 + protein of unknown function DUF224 cysteine-rich region domain protein COGs: COG2048 Heterodisulfide reductase subunit B~InterPro IPR004017~KEGG: drm:Dred_1326 hypothetical protein~PFAM: protein of unknown function DUF224 cysteine-rich region domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284102~PFAM: Cysteine-rich domain gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0805 Thein_0806 Thein_0806 Thein_0806 840669 842831 + Organic solvent tolerance protein COGs: COG1452 Organic solvent tolerance protein OstA~InterPro IPR007543~KEGG: drt:Dret_1088 organic solvent tolerance protein~PFAM: Organic solvent tolerance protein~SPTR: Organic solvent tolerance protein%3B~IMG reference gene:2505284103~PFAM: Organic solvent tolerance protein gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0806 Thein_0807 Thein_0807 Thein_0807 842845 843315 - GCN5-related N-acetyltransferase COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase~InterPro IPR000182~KEGG: aae:aq_1359 acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284104~PFAM: Acetyltransferase (GNAT) family gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0807 Thein_0808 Thein_0808 Thein_0808 843315 843983 - Sporulation domain-containing protein InterPro IPR007730~KEGG: pca:Pcar_0743 hypothetical protein~PFAM: Sporulation domain-containing protein~SPTR: Sporulation domain protein%3B~IMG reference gene:2505284105~PFAM: Sporulation related domain gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0808 Thein_0809 Thein_0809 Thein_0809 843983 845650 - arginyl-tRNA synthetase COGs: COG0018 Arginyl-tRNA synthetase~InterProIPR001278:IPR005148:IPR015945:IPR008909:IPR 001412~KEGG: pca:Pcar_0742 arginyl-tRNA synthetase~PFAM: Arginyl-tRNA synthetase%2C class Ic%2C core%3B arginyl tRNA synthetase domain protein%3B DALR anticodon binding domain protein~PRIAM: Arginine--tRNA ligase~SPTR: Arginyl-tRNA synthetase%3B~TIGRFAM: arginyl-tRNA synthetase~IMG reference gene:2505284106~PFAM: DALR anticodon binding domain%3B Arginyl tRNA synthetase N terminal domain%3B tRNA synthetases class I (R)~TIGRFAM: arginyl-tRNA synthetase gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0809 Thein_0810 Thein_0810 Thein_0810 845647 845985 - hypothetical protein KEGG: ppd:Ppro_1020 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284107 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0810 Thein_0811 Thein_0811 Thein_0811 845982 846182 - RNA-binding protein%2C predicted InterPro IPR019300~KEGG: dal:Dalk_3711 hypothetical protein~PFAM: RNA-binding protein%2C predicted~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284108~PFAM: Predicted RNA-binding protein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0811 Thein_0812 Thein_0812 Thein_0812 846365 846769 - hypothetical protein KEGG: wri:WRi_003880 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284109 gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0812 Thein_0813 Thein_0813 Thein_0813 846769 846963 - hypothetical protein KEGG: dde:Dde_2292 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284110 gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0813 Thein_0814 Thein_0814 Thein_0814 846963 847526 - translation elongation factor P COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)~InterProIPR020599:IPR011768:IPR013185:IPR001059:IPR 015365:IPR013852~KEGG: tye:THEYE_A0400 translation elongation factor P~PFAM: Elongation factor P %3B Elongation factor KOW-like domain-containing protein%3B Elongation factor P/YeiP protein~SPTR: Elongation factor P%3B~TIGRFAM: translation elongation factor P~IMG reference gene:2505284111~PFAM: Elongation factor P%2C C-terminal%3B Elongation factor P (EF-P) KOW-like domain%3B Elongation factor P (EF-P) OB domain~TIGRFAM: translation elongation factor P gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0814 Thein_0815 Thein_0815 Thein_0815 847537 847887 - Septum formation initiator InterPro IPR007060~KEGG: dak:DaAHT2_0632 septum formation initiator~PFAM: Septum formation initiator~SPTR: Septum formation initiator%3B~IMG reference gene:2505284112~PFAM: Septum formation initiator gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0815 Thein_0816 Thein_0816 Thein_0816 847931 849262 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR007127:IPR009042:IPR007627:IPR007624:IPR 007630:IPR000943:IPR014284~KEGG: dak:DaAHT2_1066 RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily~PFAM: sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B sigma-70 1.1 domain protein%3B sigma-70 region 3 domain protein%3B sigma-70 region 4 domain protein~SPTR: RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily%3B~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~IMG reference gene:2505284113~PFAM: Sigma-70%2C region 4%3B Sigma-70 factor%2C region 1.1%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0816 Thein_0817 Thein_0817 Thein_0817 849483 850226 + phosphotransferase KptA/Tpt1 InterPro IPR002745~KEGG: dol:Dole_1544 phosphotransferase KptA/Tpt1~PFAM: phosphotransferase KptA/Tpt1~SPTR: Phosphotransferase KptA/Tpt1%3B~IMG reference gene:2505284114~PFAM: RNA 2'-phosphotransferase%2C Tpt1 / KptA family gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0817 Thein_0818 Thein_0818 Thein_0818 850296 851495 + tryptophan synthase%2C beta subunit COGs: COG0133 Tryptophan synthase beta chain~InterPro IPR001926:IPR006653:IPR006654~KEGG: ppd:Ppro_1291 tryptophan synthase subunit beta~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~SPTR: Tryptophan synthase%2C beta chain%3B~TIGRFAM: tryptophan synthase%2C beta subunit~IMG reference gene:2505284115~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: tryptophan synthase%2C beta subunit gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0818 Thein_0819 Thein_0819 Thein_0819 851488 852303 + tryptophan synthase%2C alpha subunit COGs: COG0159 Tryptophan synthase alpha chain~InterPro IPR002028:IPR018204~KEGG: dae:Dtox_0911 tryptophan synthase%2C alpha subunit~PFAM: tryptophan synthase alpha chain~PRIAM: Tryptophan synthase~SPTR: Tryptophan synthase alpha chain%3B~TIGRFAM: tryptophan synthase%2C alpha subunit~IMG reference gene:2505284116~PFAM: Tryptophan synthase alpha chain~TIGRFAM: tryptophan synthase%2C alpha subunit gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0819 Thein_0820 Thein_0820 Thein_0820 852305 853411 + protein of unknown function DUF185 COGs: COG1565 conserved hypothetical protein~InterPro IPR003788~KEGG: cyp:PCC8801_3820 protein of unknown function DUF185~PFAM: protein of unknown function DUF185~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284117~PFAM: Uncharacterized ACR%2C COG1565 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0820 Thein_0821 Thein_0821 Thein_0821 853413 854537 + queuine tRNA-ribosyltransferase COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase~InterPro IPR004803:IPR002616~KEGG: pca:Pcar_1894 queuine tRNA-ribosyltransferase~PFAM: Queuine/other tRNA-ribosyltransferase~PRIAM: tRNA-guanine transglycosylase~SPTR: Queuine tRNA-ribosyltransferase%3B~TIGRFAM: queuine tRNA-ribosyltransferase%3B tRNA-guanine transglycosylase%2C various specificities~IMG reference gene:2505284118~PFAM: Queuine tRNA-ribosyltransferase~TIGRFAM: tRNA-guanine transglycosylases%2C various specificities%3B tRNA-guanine transglycosylase%2C queuosine-34-forming gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0821 Thein_0822 Thein_0822 Thein_0822 854531 854851 + preprotein translocase%2C YajC subunit COGs: COG1862 Preprotein translocase subunit YajC~InterPro IPR003849~KEGG: gsu:GSU2618 preprotein translocase%2C YajC subunit~PFAM: YajC family protein~SPTR: Preprotein translocase%2C YajC subunit%3B~TIGRFAM: preprotein translocase%2C YajC subunit~IMG reference gene:2505284119~PFAM: Preprotein translocase subunit~TIGRFAM: preprotein translocase%2C YajC subunit gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0822 Thein_0823 Thein_0823 Thein_0823 854861 856297 + cobyric acid synthase CobQ COGs: COG1492 Cobyric acid synthase~InterPro IPR017929:IPR011698:IPR004459~KEGG: pfu:PF0301 cobyric acid synthase~PFAM: CobB/CobQ domain protein glutamine amidotransferase~SPTR: Cobyric acid synthase CobQ%3B~TIGRFAM: cobyric acid synthase CobQ~IMG reference gene:2505284120~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain%3B CobB/CobQ-like glutamine amidotransferase domain~TIGRFAM: cobyric acid synthase CobQ gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0823 Thein_0824 Thein_0824 Thein_0824 856287 857591 - Cyclopropane-fatty-acyl-phospholipid synthase COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase~InterPro IPR003333~KEGG: gur:Gura_1633 cyclopropane-fatty-acyl-phospholipid synthase~PFAM: Cyclopropane-fatty-acyl-phospholipid synthase~SPTR: Cyclopropane-fatty-acyl-phospholipid synthase%3B~IMG reference gene:2505284121~PFAM: Cyclopropane-fatty-acyl-phospholipid synthase gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0824 Thein_0825 Thein_0825 Thein_0825 857710 858084 + hypothetical protein KEGG: tna:CTN_1090 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284122 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0825 Thein_0826 Thein_0826 Thein_0826 858159 859178 + Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR007197~KEGG: afu:AF1615 cofactor modifying protein (cmo)~PFAM: Radical SAM domain protein~SPTR: Cofactor modifying protein (Cmo)%3B~IMG reference gene:2505284123~PFAM: Radical SAM superfamily gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0826 Thein_0827 Thein_0827 Thein_0827 859352 860430 + pseudogene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0827 Thein_0828 Thein_0828 Thein_0828 866434 866661 + hypothetical protein SPTR: Transferase%3B~IMG reference gene:2505284130 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0828 Thein_0829 Thein_0829 Thein_0829 866693 867730 - cytochrome d ubiquinol oxidase%2C subunit II COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2~InterPro IPR003317~KEGG: dal:Dalk_2358 cytochrome d ubiquinol oxidase%2C subunit II~PFAM: cytochrome bd ubiquinol oxidase subunit II~SPTR: Cytochrome d ubiquinol oxidase%2C subunit II%3B~TIGRFAM: cytochrome d ubiquinol oxidase%2C subunit II~IMG reference gene:2505284131~PFAM: Cytochrome oxidase subunit II~TIGRFAM: cytochrome d oxidase%2C subunit II (cydB) gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0829 Thein_0830 Thein_0830 Thein_0830 867748 869100 - cytochrome bd ubiquinol oxidase subunit I COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1~InterPro IPR002585~KEGG: dvl:Dvul_0118 cytochrome bd ubiquinol oxidase%2C subunit I~PFAM: cytochrome bd ubiquinol oxidase subunit I~SPTR: Cytochrome bd ubiquinol oxidase%2C subunit I%3B~IMG reference gene:2505284132~PFAM: Bacterial Cytochrome Ubiquinol Oxidase gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0830 Thein_0831 Thein_0831 Thein_0831 869248 869649 - transcriptional regulator%2C BadM/Rrf2 family COGs: COG1959 transcriptional regulator protein~InterPro IPR000944~KEGG: dma:DMR_28290 putative Rrf2 family DNA binding protein~PFAM: protein of unknown function UPF0074~SPTR: Transcriptional regulator%2C BadM/Rrf2 family%3B~TIGRFAM: transcriptional regulator%2C Rrf2 family~IMG reference gene:2505284133~PFAM: Transcriptional regulator~TIGRFAM: Rrf2 family protein gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0831 Thein_0832 Thein_0832 Thein_0832 869776 870597 + formyl transferase domain protein COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN~KEGG: adg:Adeg_0900 formyl transferase domain protein~SPTR: Formyl transferase domain protein%3B~IMG reference gene:2505284134~PFAM: Formyl transferase gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0832 Thein_0833 Thein_0833 Thein_0833 870598 871665 + aminotransferase class I and II COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~InterPro IPR004839~KEGG: dat:HRM2_45660 putative histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~PFAM: aminotransferase class I and II~SPTR: Putative histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase%3B~IMG reference gene:2505284135~PFAM: Aminotransferase class I and II gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0833 Thein_0834 Thein_0834 Thein_0834 871662 872348 + 2-phosphosulfolactate phosphatase COGs: COG2045 Phosphosulfolactate phosphohydrolase~InterPro IPR005238~KEGG: tna:CTN_1781 2-phosphosulfolactate phosphatase~PFAM: 2-phosphosulfolactate phosphatase~PRIAM: 2-phosphosulfolactate phosphatase~SPTR: 2-phosphosulfolactate phosphatase%3B~IMG reference gene:2505284136~PFAM: 2-phosphosulpholactate phosphatase~TIGRFAM: 2-phosphosulfolactate phosphatase gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0834 Thein_0835 Thein_0835 Thein_0835 872644 874284 + NAD+ synthetase COGs: COG0171 NAD synthase~InterPro IPR014445:IPR003010:IPR000132:IPR003694~KEGG: dal:Dalk_2633 NAD+ synthetase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: NAD+ synthetase%3B~TIGRFAM: NAD+ synthetase~IMG reference gene:2505284137~PFAM: NAD synthase%3B Carbon-nitrogen hydrolase~TIGRFAM: NAD+ synthetase gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0835 Thein_0836 Thein_0836 Thein_0836 874285 874935 - CAAX prenyl protease-related protein InterPro IPR003675:IPR014346~KEGG: ppd:Ppro_2431 abortive infection protein~PFAM: Abortive infection protein~SPTR: Abortive infection protein%3B~TIGRFAM: CAAX prenyl protease-related protein~IMG reference gene:2505284138~PFAM: CAAX amino terminal protease family~TIGRFAM: CAAX prenyl protease-related protein gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0836 Thein_0837 Thein_0837 Thein_0837 874958 875491 + cob(I)alamin adenosyltransferase COGs: COG2109 ATP:corrinoid adenosyltransferase~InterPro IPR003724~KEGG: aps:CFPG_329 cob(I)alamin adenosyltransferase~PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP~SPTR: Cob(I)alamin adenosyltransferase%3B~TIGRFAM: cob(I)alamin adenosyltransferase~IMG reference gene:2505284139~PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP~TIGRFAM: cob(I)alamin adenosyltransferase gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0837 Thein_0838 Thein_0838 Thein_0838 875545 875937 + hypothetical protein KEGG: ckr:CKR_1638 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284140 gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0838 Thein_0839 Thein_0839 Thein_0839 875940 877619 + CTP synthase COGs: COG0504 CTP synthase (UTP-ammonia lyase)~InterPro IPR004468:IPR017926:IPR017456:IPR000991~KEGG: dak:DaAHT2_1327 CTP synthase~PFAM: CTP synthase-like%3B glutamine amidotransferase class-I~PRIAM: CTP synthase~SPTR: CTP synthase%3B~TIGRFAM: CTP synthase~IMG reference gene:2505284141~PFAM: Glutamine amidotransferase class-I%3B CTP synthase N-terminus~TIGRFAM: CTP synthase gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0839 Thein_0840 Thein_0840 Thein_0840 877603 878238 + glucose inhibited division protein COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division~InterPro IPR003682~KEGG: dps:DP1283 glucose inhibited division protein B~PFAM: glucose inhibited division protein~SPTR: Ribosomal RNA small subunit methyltransferase G%3B~IMG reference gene:2505284142~PFAM: rRNA small subunit methyltransferase G gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0840 Thein_0841 Thein_0841 Thein_0841 878469 879809 - DNA repair protein RadA COGs: COG1066 ATP-dependent serine protease~InterPro IPR007694:IPR003593:IPR004504~KEGG: sth:STH3128 DNA repair protein RadA~PFAM: DnaB domain protein helicase domain protein~SMART: AAA ATPase~SPTR: DNA repair protein radA%3B~TIGRFAM: DNA repair protein RadA~IMG reference gene:2505284143~PFAM: KaiC~TIGRFAM: DNA repair protein RadA gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0841 Thein_0842 Thein_0842 Thein_0842 879917 880219 + protein of unknown function DUF156 InterPro IPR003735~KEGG: cpb:Cphamn1_0277 protein of unknown function DUF156~PFAM: protein of unknown function DUF156~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284144~PFAM: Uncharacterised BCR%2C COG1937 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0842 Thein_0843 Thein_0843 Thein_0843 880200 880925 + hypothetical protein COGs: COG0348 Polyferredoxin~InterPro IPR017896:IPR017900~KEGG: gsu:GSU0729 iron-sulfur cluster-binding protein~SPTR: Iron-sulfur cluster-binding protein%3B~IMG reference gene:2505284145 gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0843 Thein_0844 Thein_0844 Thein_0844 880858 881523 - glutamine amidotransferase of anthranilate synthase COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II~InterProIPR017926:IPR000991:IPR006220:IPR011702:IPR 001317:IPR006221~KEGG: dak:DaAHT2_0448 glutamine amidotransferase of anthranilate synthase~PFAM: glutamine amidotransferase class-I~SPTR: Glutamine amidotransferase of anthranilate synthase%3B~TIGRFAM: glutamine amidotransferase of anthranilate synthase~IMG reference gene:2505284146~PFAM: Glutamine amidotransferase class-I~TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0844 Thein_0845 Thein_0845 Thein_0845 881523 883007 - anthranilate synthase component I COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I~InterPro IPR006805:IPR015890:IPR019999:IPR005256~KEGG: gsu:GSU2383 anthranilate synthase component I~PFAM: Chorismate binding-like%3B Anthranilate synthase component I domain protein~PRIAM: Anthranilate synthase~SPTR: Anthranilate synthase component I%3B~TIGRFAM: anthranilate synthase component I~IMG reference gene:2505284147~PFAM: Anthranilate synthase component I%2C N terminal region%3B chorismate binding enzyme~TIGRFAM: anthranilate synthase component I%2C non-proteobacterial lineages gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0845 Thein_0846 Thein_0846 Thein_0846 883087 883605 + CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase COGs: COG0558 Phosphatidylglycerophosphate synthase~InterPro IPR004570:IPR000462~KEGG: sat:SYN_01716 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%3B~TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase~IMG reference gene:2505284148~PFAM: CDP-alcohol phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0846 Thein_0847 Thein_0847 Thein_0847 883618 884382 - protein of unknown function DUF1555 InterPro IPR011449:IPR013424~KEGG: app:CAP2UW1_0463 hypothetical protein~PFAM: protein of unknown function DUF1555~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284149~PFAM: PEP-CTERM motif~TIGRFAM: PEP-CTERM putative exosortase interaction domain gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0847 Thein_0848 Thein_0848 Thein_0848 884535 885515 - putative transcriptional regulator%2C AsnC family COGs: COG1522 Transcriptional regulators~InterPro IPR019888~KEGG: sfu:Sfum_4037 AsnC family transcriptional regulator~SMART: Transcription regulator AsnC-type~SPTR: Transcriptional regulator%2C AsnC family%3B~IMG reference gene:2505284150 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0848 Thein_0849 Thein_0849 Thein_0849 886110 887246 + secretion protein HlyD family protein COGs: COG1566 Multidrug resistance efflux pump~InterPro IPR006143:IPR003997~KEGG: aae:aq_1060 hypothetical protein~PFAM: secretion protein HlyD family protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284151~PFAM: HlyD family secretion protein gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0849 Thein_0850 Thein_0850 Thein_0850 887243 888790 + drug resistance transporter%2C EmrB/QacA subfamily COGs: COG2814 Arabinose efflux permease~InterPro IPR011701:IPR004638~KEGG: ddf:DEFDS_0617 multidrug-efflux transporter MFS family~PFAM: major facilitator superfamily MFS_1~SPTR: Multidrug-efflux transporter%2C MFS family%3B~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~IMG reference gene:2505284152~PFAM: Major Facilitator Superfamily~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0850 Thein_0851 Thein_0851 Thein_0851 888787 890091 + outer membrane efflux protein COGs: COG1538 Outer membrane protein~InterPro IPR003423~KEGG: sat:SYN_01010 type I secretion outer membrane protein~PFAM: outer membrane efflux protein~SPTR: Type I secretion outer membrane protein%3B~IMG reference gene:2505284153~PFAM: Outer membrane efflux protein gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0851 Thein_0852 Thein_0852 Thein_0852 890102 890692 - AMMECR1 domain protein COGs: COG2078 conserved hypothetical protein~InterPro IPR002733~KEGG: sfu:Sfum_1996 AMMECR1 domain-containing protein~PFAM: AMMECR1 domain protein~SPTR: AMMECR1 domain protein%3B~IMG reference gene:2505284154~PFAM: AMMECR1~TIGRFAM: uncharacterized protein%2C PH0010 family gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0852 Thein_0853 Thein_0853 Thein_0853 890694 891422 - disulfide bond isomerase%2C DsbC/G InterPro IPR018950~KEGG: hth:HTH_1351 thiol:disulfide interchange protein~PFAM: Disulphide bond isomerase%2C DsbC/G-like~SPTR: Thiol:disulfide interchange protein%3B~IMG reference gene:2505284155~PFAM: Disulfide bond isomerase protein N-terminus gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0853 Thein_0854 Thein_0854 Thein_0854 891551 892708 + aminotransferase class V COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase~InterPro IPR000192:IPR020578~KEGG: tna:CTN_1191 aspartate aminotransferase~PFAM: aminotransferase class V~SPTR: Serine--glyoxylate transaminase%3B~IMG reference gene:2505284156~PFAM: Aminotransferase class-V gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0854 Thein_0855 Thein_0855 Thein_0855 892711 894297 + D-3-phosphoglycerate dehydrogenase COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140:IPR002912:IPR006236~KEGG: dak:DaAHT2_0597 D-3-phosphoglycerate dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region%3B amino acid-binding ACT domain protein~PRIAM: Phosphoglycerate dehydrogenase~SPTR: D-3-phosphoglycerate dehydrogenase%3B~TIGRFAM: D-3-phosphoglycerate dehydrogenase~IMG reference gene:2505284157~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B ACT domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain~TIGRFAM: D-3-phosphoglycerate dehydrogenase gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0855 Thein_0856 Thein_0856 Thein_0856 894539 894721 + hypothetical protein IMG reference gene:2505284158 gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0856 Thein_0857 Thein_0857 Thein_0857 894718 895686 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505284159~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0857 Thein_0858 Thein_0858 Thein_0858 895910 898180 + Tetratricopeptide TPR_1 repeat-containing protein COGs: COG3063 Tfp pilus assembly protein PilF~InterPro IPR019734:IPR013026:IPR001440:IPR003107~KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SPTR: Tetratricopeptide (TPR) domain protein%3B~IMG reference gene:2505284160~PFAM: Tetratricopeptide repeat%3B PPR repeat gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0858 Thein_0859 Thein_0859 Thein_0859 898158 899207 + radical SAM enzyme%2C Cfr family COGs: COG0820 Fe-S-cluster redox enzyme~InterPro IPR004383:IPR007197~KEGG: dak:DaAHT2_0795 radical SAM enzyme%2C Cfr family~PFAM: Radical SAM domain protein~SPTR: Radical SAM enzyme%2C Cfr family%3B~TIGRFAM: radical SAM enzyme%2C Cfr family~IMG reference gene:2505284161~PFAM: Radical SAM superfamily~TIGRFAM: 23S rRNA m2A2503 methyltransferase gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0859 Thein_0860 Thein_0860 Thein_0860 899204 900589 + gid protein COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation~InterPro IPR004417:IPR002218~KEGG: adg:Adeg_0573 tRNA (uracil-5-)-methyltransferase Gid~PFAM: glucose-inhibited division protein A~PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing)~SPTR:Methylenetetrahydrofolate--tRNA-(uracil-5-)-me thyltransferasetrmFO%3B~TIGRFAM: gid protein~IMG reference gene:2505284162~PFAM: Glucose inhibited division protein A~TIGRFAM: tRNA:m(5)U-54 methyltransferase gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0860 Thein_0861 Thein_0861 Thein_0861 900570 900812 + hypothetical protein KEGG: sth:STH1731 cytochrome c biogenesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284163 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0861 Thein_0862 Thein_0862 Thein_0862 900898 902229 + trigger factor COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)~InterPro IPR005215:IPR008881:IPR001179:IPR008880~KEGG: gem:GM21_3012 trigger factor~PFAM: trigger factor domain-containing protein%3B peptidylprolyl isomerase FKBP-type~SPTR: Trigger factor%3B~TIGRFAM: trigger factor~IMG reference gene:2505284164~PFAM: Bacterial trigger factor protein (TF) C-terminus%3B Bacterial trigger factor protein (TF)~TIGRFAM: trigger factor gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0862 Thein_0863 Thein_0863 Thein_0863 902232 902840 + ATP-dependent Clp protease%2C proteolytic subunit ClpP COGs: COG0740 Protease subunit of ATP-dependent Clp protease~InterPro IPR001907:IPR018215~KEGG: adg:Adeg_0489 ATP-dependent Clp protease proteolytic subunit~PFAM: peptidase S14 ClpP~PRIAM: Endopeptidase Clp~SPTR: ATP-dependent Clp protease proteolytic subunit%3B~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP~IMG reference gene:2505284165~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0863 Thein_0864 Thein_0864 Thein_0864 902833 904080 + ATP-dependent Clp protease%2C ATP-binding subunit ClpX COGs: COG1219 ATP-dependent protease Clp ATPase subunit~InterProIPR004487:IPR010603:IPR013093:IPR019489:IPR 003593~KEGG: sfu:Sfum_0099 ATP-dependent protease ATP-binding subunit ClpX~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like~SMART: AAA ATPase~SPTR: ATP-dependent Clp protease ATP-binding subunit clpX%3B~TIGRFAM: ATP-dependent Clp protease%2C ATP-binding subunit ClpX~IMG reference gene:2505284166~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ClpX C4-type zinc finger~TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0864 Thein_0865 Thein_0865 Thein_0865 904089 906503 + ATP-dependent protease La COGs: COG0466 ATP-dependent Lon protease~InterProIPR003111:IPR003959:IPR003593:IPR001984:IPR 008268:IPR004815~KEGG: sfu:Sfum_0098 ATP-dependent protease La~PFAM: peptidase S16 lon domain protein%3B AAA ATPase central domain protein~PRIAM: Endopeptidase La~SMART: peptidase S16 lon domain protein%3B AAA ATPase~SPTR: Lon protease 1%3B~TIGRFAM: ATP-dependent protease La~IMG reference gene:2505284167~PFAM: ATP-dependent protease La (LON) domain%3B ATPase family associated with various cellular activities (AAA)%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: lon-related putative ATP-dependent protease%3B ATP-dependent protease La gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0865 Thein_0866 Thein_0866 Thein_0866 906725 907495 + protein of unknown function DUF218 COGs: COG1434 conserved hypothetical protein~InterPro IPR003848~KEGG: ant:Arnit_0792 hypothetical protein~PFAM: protein of unknown function DUF218~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284170~PFAM: DUF218 domain gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0866 Thein_0867 Thein_0867 Thein_0867 907499 908080 + phosphoheptose isomerase COGs: COG0279 Phosphoheptose isomerase~InterPro IPR020620:IPR001347:IPR004515~KEGG: mvu:Metvu_0054 phosphoheptose isomerase~PFAM: sugar isomerase (SIS)~SPTR: Phosphoheptose isomerase%3B~TIGRFAM: phosphoheptose isomerase~IMG reference gene:2505284171~PFAM: SIS domain~TIGRFAM: phosphoheptose isomerase gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0867 Thein_0868 Thein_0868 Thein_0868 908070 909014 + hypothetical protein KEGG: dat:HRM2_35930 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284172 gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0868 Thein_0869 Thein_0869 Thein_0869 909004 909372 + hypothetical protein COGs: COG2164 conserved hypothetical protein~InterPro IPR007256~KEGG: tna:CTN_1224 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284173~PFAM: Domain of unknown function (DUF369) gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0869 Thein_0870 Thein_0870 Thein_0870 909386 909613 + regulatory protein%2C FmdB family InterPro IPR013429~KEGG: dol:Dole_3061 FmdB family regulatory protein~PFAM: Putative regulatory protein FmdB~SPTR: Putative regulatory protein%2C FmdB family%3B~TIGRFAM: regulatory protein%2C FmdB family~IMG reference gene:2505284174~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0870 Thein_0871 Thein_0871 Thein_0871 909617 910507 + hypothetical protein KEGG: dae:Dtox_0155 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284175 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0871 Thein_0872 Thein_0872 Thein_0872 910561 911490 + porphobilinogen deaminase COGs: COG0181 Porphobilinogen deaminase~InterPro IPR000860~KEGG: dak:DaAHT2_0535 porphobilinogen deaminase~PFAM: Porphobilinogen deaminase~PRIAM: Hydroxymethylbilane synthase~SPTR: Porphobilinogen deaminase%3B~TIGRFAM: porphobilinogen deaminase~IMG reference gene:2505284176~PFAM: Porphobilinogen deaminase%2C C-terminal domain%3B Porphobilinogen deaminase%2C dipyromethane cofactor binding domain~TIGRFAM: porphobilinogen deaminase gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0872 Thein_0873 Thein_0873 Thein_0873 911490 912998 + uroporphyrin-III C-methyltransferase COGs: COG0007 Uroporphyrinogen-III methylase~InterPro IPR000878:IPR003754:IPR003043:IPR006366~KEGG: dal:Dalk_4009 uroporphyrin-III C-methyltransferase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B Uroporphyrinogen III synthase HEM4~SPTR: Uroporphyrin-III C-methyltransferase%3B~TIGRFAM: uroporphyrin-III C-methyltransferase~IMG reference gene:2505284177~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases%3B Uroporphyrinogen-III synthase HemD~TIGRFAM: uroporphyrin-III C-methyltransferase gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0873 Thein_0874 Thein_0874 Thein_0874 913178 913714 - hypothetical protein KEGG: kol:Kole_1147 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284178~PFAM: Predicted permease gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0874 Thein_0875 Thein_0875 Thein_0875 913711 914193 - hypothetical protein KEGG: kol:Kole_1148 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284179~PFAM: Predicted permease gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0875 Thein_0876 Thein_0876 Thein_0876 915041 916165 + Cysteine desulfurase COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase~InterPro IPR016454:IPR000192:IPR020578~KEGG: geo:Geob_2507 aminotransferase class V~PFAM: aminotransferase class V~PRIAM: Cysteine desulfurase~SPTR: Aminotransferase class V%3B~IMG reference gene:2505284180~PFAM: Aminotransferase class-V gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0876 Thein_0877 Thein_0877 Thein_0877 916175 917404 + major facilitator superfamily MFS_1 InterPro IPR011701~KEGG: gbm:Gbem_1224 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: Major facilitator superfamily MFS_1%3B~IMG reference gene:2505284181~PFAM: Bacterial protein of unknown function (DUF894) gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0877 Thein_0878 Thein_0878 Thein_0878 919957 920649 - Conserved hypothetical protein CHP00730 COGs: COG1611 Rossmann fold nucleotide-binding protein~InterPro IPR005269~KEGG: ddf:DEFDS_0585 hypothetical protein~PFAM: Conserved hypothetical protein CHP00730~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284182~PFAM: Possible lysine decarboxylase~TIGRFAM: TIGR00725 family protein%3B TIGR00730 family protein gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0878 Thein_0879 Thein_0879 Thein_0879 920646 921425 - DNA repair protein RecO COGs: COG1381 Recombinational DNA repair protein (RecF pathway)~InterPro IPR003717~KEGG: cdl:CDR20291_2327 DNA repair protein~PFAM: Recombination protein O RecO~SPTR: Recombination protein O%2C RecO%3B~TIGRFAM: DNA repair protein RecO~IMG reference gene:2505284183~PFAM: Recombination protein O C terminal%3B Recombination protein O N terminal~TIGRFAM: DNA repair protein RecO gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0879 Thein_0880 Thein_0880 Thein_0880 921429 921944 - hypothetical protein COGs: COG1426 conserved hypothetical protein~KEGG: tte:TTE1826 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284184 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0880 Thein_0881 Thein_0881 Thein_0881 921944 922861 - SurA domain protein InterPro IPR000297:IPR015391~KEGG: dat:HRM2_28180 PpiD2~PFAM: SurA domain%3B PpiC-type peptidyl-prolyl cis-trans isomerase~SPTR: PpiD2%3B~IMG reference gene:2505284185~PFAM: SurA N-terminal domain%3B PPIC-type PPIASE domain gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0881 Thein_0882 Thein_0882 Thein_0882 922858 926361 - transcription-repair coupling factor COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase)~InterProIPR014021:IPR001650:IPR003711:IPR011545:IPR 005118:IPR014001:IPR004576~KEGG: gem:GM21_0197 transcription-repair coupling factor~PFAM: DEAD/DEAH box helicase domain protein%3B transcription factor CarD%3B helicase domain protein%3B TRCF domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: Transcription-repair coupling factor%3B~TIGRFAM: transcription-repair coupling factor~IMG reference gene:2505284186~PFAM: Helicase conserved C-terminal domain%3B TRCF domain%3B CarD-like/TRCF domain%3B DEAD/DEAH box helicase~TIGRFAM: transcription-repair coupling factor (mfd) gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0882 Thein_0883 Thein_0883 Thein_0883 926693 928195 + diguanylate cyclase COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain~InterPro IPR000160:IPR013976~KEGG: ppd:Ppro_3373 diguanylate cyclase~PFAM: GGDEF domain containing protein%3B Metal-dependent hydrolase HDOD~SMART: GGDEF domain containing protein~SPTR: Diguanylate cyclase%3B~TIGRFAM: diguanylate cyclase~IMG reference gene:2505284187~PFAM: GGDEF domain%3B HDOD domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0883 Thein_0884 Thein_0884 Thein_0884 928221 928496 - ribosomal protein L27 COGs: COG0211 Ribosomal protein L27~InterPro IPR001684:IPR018261~KEGG: pmx:PERMA_0052 50S ribosomal protein L27~PFAM: ribosomal protein L27~SPTR: 50S ribosomal protein L27%3B~TIGRFAM: ribosomal protein L27~IMG reference gene:2505284188~PFAM: Ribosomal L27 protein~TIGRFAM: ribosomal protein L27 gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0884 Thein_0885 Thein_0885 Thein_0885 928508 928819 - ribosomal protein L21 COGs: COG0261 Ribosomal protein L21~InterPro IPR001787:IPR018258~KEGG: dps:DP2592 50S ribosomal protein L21~PFAM: ribosomal protein L21~SPTR: 50S ribosomal protein L21%3B~TIGRFAM: ribosomal protein L21~IMG reference gene:2505284189~PFAM: Ribosomal prokaryotic L21 protein~TIGRFAM: ribosomal protein L21 gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0885 Thein_0886 Thein_0886 Thein_0886 929069 930214 + Radical SAM domain protein COGs: COG2896 Molybdenum cofactor biosynthesis protein~InterPro IPR007197:IPR006638:IPR000385~KEGG: afu:AF2104 hypothetical protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284190~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM additional 4Fe4S-binding domain gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0886 Thein_0887 Thein_0887 Thein_0887 930236 931633 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase COGs: COG0836 Mannose-1-phosphate guanylyltransferase~InterPro IPR005835:IPR001538:IPR006375~KEGG: saf:SULAZ_0358 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~PFAM: mannose-6-phosphate isomerase type II%3B Nucleotidyl transferase~PRIAM: Mannose-6-phosphate isomerase~SPTR: Strongly similar to GDP-mannose pyrophosphorylase%3B~TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~IMG reference gene:2505284191~PFAM: Nucleotidyl transferase%3B Mannose-6-phosphate isomerase~TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0887 Thein_0888 Thein_0888 Thein_0888 931646 932989 - phosphofructokinase COGs: COG0205 6-phosphofructokinase~InterPro IPR012004:IPR000023~KEGG: dol:Dole_2111 diphosphate--fructose-6-phosphate 1-phosphotransferase~PFAM: phosphofructokinase~SPTR: Diphosphate--fructose-6-phosphate 1-phosphotransferase%3B~IMG reference gene:2505284192~PFAM: Phosphofructokinase gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0888 Thein_0889 Thein_0889 Thein_0889 933037 933948 - NAD-dependent epimerase/dehydratase COGs: COG1090 nucleoside-diphosphate sugar epimerase~InterPro IPR001509:IPR013549:IPR010099~KEGG: dak:DaAHT2_0933 domain of unknown function DUF1731~PFAM: NAD-dependent epimerase/dehydratase%3B domain of unknown function DUF1731~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284193~PFAM: NAD dependent epimerase/dehydratase family%3B Domain of unknown function (DUF1731)~TIGRFAM: TIGR01777 family protein gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0889 Thein_0890 Thein_0890 Thein_0890 934321 935700 + histidine kinase COGs: COG2205 Osmosensitive K+ channel histidine kinase~InterPro IPR005467:IPR003661:IPR003594~KEGG: dak:DaAHT2_1963 multi-sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: histidine kinase A domain protein%3B ATP-binding region ATPase domain protein~SPTR: Multi-sensor signal transduction histidine kinase%3B~IMG reference gene:2505284194~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0890 Thein_0891 Thein_0891 Thein_0891 935697 936203 + histidine triad (HIT) protein COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase~InterPro IPR001310~KEGG: sfu:Sfum_2126 histidine triad (HIT) protein~PFAM: histidine triad (HIT) protein~SPTR: Histidine triad (HIT) protein%3B~IMG reference gene:2505284195~PFAM: HIT domain gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0891 Thein_0892 Thein_0892 Thein_0892 936196 937110 + Radical SAM domain protein COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein~InterPro IPR016431:IPR007197~KEGG: dtu:Dtur_1225 radical SAM domain protein~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~manually curated~IMG reference gene:2505284196~PFAM: Radical SAM superfamily gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0892 Thein_0893 Thein_0893 Thein_0893 937282 937602 + sulfur relay protein%2C TusE/DsrC/DsvC family COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) gamma subunit~InterPro IPR007453~KEGG: dak:DaAHT2_2041 sulfur relay protein%2C TusE/DsrC/DsvC family~PFAM: DsrC family protein~PRIAM: Hydrogensulfite reductase~SPTR: Dissimilatory sulfite reductase subunit C%3B~TIGRFAM: sulfur relay protein%2C TusE/DsrC/DsvC family~IMG reference gene:2505284197~PFAM: DsrC like protein~TIGRFAM: sulfur relay protein%2C TusE/DsrC/DsvC family gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0893 Thein_0894 Thein_0894 Thein_0894 938301 939986 + hypothetical protein KEGG: gsu:GSU2199 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284198~PFAM: Protein of unknown function (DUF3373) gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0894 Thein_0895 Thein_0895 Thein_0895 940016 940675 - Radical SAM domain protein COGs: COG0602 Organic radical activating protein~InterPro IPR007197~KEGG: tbd:Tbd_2203 radical activating enzyme~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505284199~PFAM: Radical SAM superfamily~TIGRFAM: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0895 Thein_0896 Thein_0896 Thein_0896 940676 941047 - 6-pyruvoyl tetrahydropterin synthase COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase~InterPro IPR007115~KEGG: sfu:Sfum_0003 putative 6-pyruvoyl tetrahydropterin synthase~PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284200~PFAM: 6-pyruvoyl tetrahydropterin synthase~TIGRFAM: queuosine biosynthesis protein QueD%3B 6-pyruvoyl tetrahydropterin synthase/QueD family protein gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0896 Thein_0897 Thein_0897 Thein_0897 941562 944615 + Phosphoribosylformylglycinamidine synthase COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain~InterPro IPR000728:IPR010918~KEGG: sat:SYN_00521 phosphoribosylformylglycinamidine synthase~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein~PRIAM: Phosphoribosylformylglycinamidine synthase~SPTR: Phosphoribosylformylglycinamidine synthase II%3B~IMG reference gene:2505284203~PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase%3B AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: phosphoribosylformylglycinamidine synthase II gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0897 Thein_0898 Thein_0898 Thein_0898 944697 945374 - hypothetical protein KEGG: dvi:Dvir_GJ22664 GJ22664 gene product from transcript GJ22664-RA~SPTR: GJ22664%3B~IMG reference gene:2505284204 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0898 Thein_0899 Thein_0899 Thein_0899 945353 947038 - Tetratricopeptide TPR_1 repeat-containing protein COGs: COG2956 N-acetylglucosaminyl transferase~InterPro IPR019734:IPR013026:IPR001440:IPR003107~KEGG: pmx:PERMA_0503 tetratricopeptide repeat domain protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SPTR: TPR repeat:Tetratricopeptide TPR_4%3B~IMG reference gene:2505284205~PFAM: Coatomer epsilon subunit%3B Tetratricopeptide repeat gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0899 Thein_0900 Thein_0900 Thein_0900 947001 948155 - putative RNA polymerase%2C sigma 70 family subunit COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR009042:IPR007627:IPR007630:IPR000943:IPR 014284~KEGG: dal:Dalk_0134 putative RNA polymerase%2C sigma 70 family subunit~PFAM: sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B sigma-70 region 4 domain protein~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~IMG reference gene:2505284206~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family%3B alternative sigma factor RpoH gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0900 Thein_0901 Thein_0901 Thein_0901 948164 950062 - glucose inhibited division protein A COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division~InterPro IPR004416:IPR002218:IPR013027:IPR020595~KEGG: dps:DP0852 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA~PFAM: glucose-inhibited division protein A~SPTR: Glucose-inhibited division protein A subfamily%3B~TIGRFAM: glucose inhibited division protein A~IMG reference gene:2505284207~PFAM: Glucose inhibited division protein A~TIGRFAM: glucose-inhibited division protein A gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0901 Thein_0902 Thein_0902 Thein_0902 950507 950881 + hypothetical protein KEGG: tcx:Tcr_0574 methyl-accepting chemotaxis sensory transducer~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2505284208 gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0902 Thein_0903 Thein_0903 Thein_0903 950878 952104 - protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR002550:IPR005170~KEGG: app:CAP2UW1_1016 protein of unknown function DUF21~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SMART: CBS domain containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284209~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0903 Thein_0904 Thein_0904 Thein_0904 952101 953357 - protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR002550:IPR005170~KEGG: pmx:PERMA_1603 CBS/transporter-associated domain protein~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SPTR: CBS/transporter-associated domain protein%3B~IMG reference gene:2505284210~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0904 Thein_0905 Thein_0905 Thein_0905 953654 954751 + protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: pmx:PERMA_1745 membrane protein~PFAM: protein of unknown function UPF0118~SPTR: Membrane protein%3B~IMG reference gene:2505284211~PFAM: Domain of unknown function DUF20 gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0905 Thein_0906 Thein_0906 Thein_0906 954720 955523 + formamidopyrimidine-DNA glycosylase COGs: COG0266 Formamidopyrimidine-DNA glycosylase~InterProIPR020629:IPR000214:IPR012319:IPR015886:IPR 000191~KEGG: dau:Daud_1404 formamidopyrimidine-DNA glycosylase~PFAM: DNA glycosylase/AP lyase%2C H2TH DNA-binding%3B Formamidopyrimidine-DNA glycosylase catalytic domain protein~PRIAM: DNA-formamidopyrimidine glycosylase~SPTR: Formamidopyrimidine-DNA glycosylase%3B~TIGRFAM: formamidopyrimidine-DNA glycosylase~IMG reference gene:2505284212~PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain%3B Formamidopyrimidine-DNA glycosylase N-terminal domain~TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0906 Thein_0907 Thein_0907 Thein_0907 955614 958256 + valyl-tRNA synthetase COGs: COG0525 Valyl-tRNA synthetase~InterProIPR002300:IPR013155:IPR019499:IPR019754:IPR 001412:IPR002303~KEGG: dak:DaAHT2_1051 valyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ia%3B tRNA synthetase valyl/leucyl anticodon-binding%3B Valyl-tRNA synthetase%2C class Ia%2C tRNA binding arm~SPTR: Valyl-tRNA synthetase%3B~TIGRFAM: valyl-tRNA synthetase~IMG reference gene:2505284213~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain%3B Valyl tRNA synthetase tRNA binding arm~TIGRFAM: valyl-tRNA synthetase gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0907 Thein_0908 Thein_0908 Thein_0908 958257 959459 + pseudogene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0908 Thein_0909 Thein_0909 Thein_0909 959493 959957 - peptidylprolyl isomerase FKBP-type COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2~InterPro IPR001179~KEGG: cyc:PCC7424_1274 peptidylprolyl isomerase FKBP-type~PFAM: peptidylprolyl isomerase FKBP-type~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2505284215~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0909 Thein_0910 Thein_0910 Thein_0910 960712 962127 + PAS/PAC sensor hybrid histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR005467:IPR001789:IPR000014:IPR003594:IPR 004358~KEGG: cts:Ctha_2235 PAS/PAC sensor hybrid histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B response regulator receiver~SPTR: PAS/PAC sensor hybrid histidine kinase%3B~IMG reference gene:2505284216~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0910 Thein_0911 Thein_0911 Thein_0911 962425 963393 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505284217~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0911 Thein_0912 Thein_0912 Thein_0912 963390 963572 - hypothetical protein IMG reference gene:2505284218 gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0912 Thein_0913 Thein_0913 Thein_0913 963832 965084 - pseudogene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0913 Thein_0914 Thein_0914 Thein_0914 965204 966568 - putative signal transduction protein COGs: COG1639 signal transduction protein~InterPro IPR013976~KEGG: dar:Daro_1602 protein kinase:GAF~PFAM: Metal-dependent hydrolase HDOD~SPTR: Protein kinase:GAF%3B~IMG reference gene:2505284220~PFAM: HDOD domain gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0914 Thein_0915 Thein_0915 Thein_0915 966611 967069 + phosphatidylglycerophosphatase A COGs: COG1267 Phosphatidylglycerophosphatase A and related protein~InterPro IPR007686~KEGG: maq:Maqu_0848 phosphatidylglycerophosphatase~PFAM: phosphatidylglycerophosphatase A~SPTR: Phosphatidylglycerophosphatase%3B~IMG reference gene:2505284221~PFAM: Phosphatidylglycerophosphatase A gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0915 Thein_0916 Thein_0916 Thein_0916 967047 967454 - protein of unknown function DUF523 COGs: COG1683 conserved hypothetical protein~InterPro IPR007553~KEGG: dps:DP1762 hypothetical protein~PFAM: protein of unknown function DUF523~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284222~PFAM: Protein of unknown function (DUF523) gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0916 Thein_0917 Thein_0917 Thein_0917 967456 968505 - phosphoribosylformylglycinamidine cyclo-ligase COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase~InterPro IPR000728:IPR010918:IPR004733~KEGG: dak:DaAHT2_1081 phosphoribosylformylglycinamidine cyclo-ligase~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein~PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase~SPTR: Phosphoribosylformylglycinamidine cyclo-ligase%3B~TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase~IMG reference gene:2505284223~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: phosphoribosylaminoimidazole synthetase gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0917 Thein_0918 Thein_0918 Thein_0918 968495 969238 - glutamate synthase alpha subunit domain protein COGs: COG0070 Glutamate synthase domain 3~InterPro IPR017441:IPR002489:IPR012061~KEGG: dsa:Desal_1634 glutamate synthase alpha subunit domain protein~PFAM: glutamate synthase alpha subunit domain protein~SPTR: Glutamate synthase alpha subunit domain protein%3B~IMG reference gene:2505284224~PFAM: GXGXG motif gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0918 Thein_0919 Thein_0919 Thein_0919 969254 970462 - glutamine amidotransferase class-II COGs: COG0067 Glutamate synthase domain 1~InterPro IPR000583:IPR017932~KEGG: geo:Geob_3276 glutamine amidotransferase class-II~PFAM: glutamine amidotransferase class-II~SPTR: Glutamine amidotransferase class-II%3B~IMG reference gene:2505284225~PFAM: Glutamine amidotransferases class-II gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0919 Thein_0920 Thein_0920 Thein_0920 970465 972024 - Glutamate synthase (NADPH) COGs: COG0069 Glutamate synthase domain 2~InterPro IPR017900:IPR002932:IPR017896~KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit~PFAM: ferredoxin-dependent glutamate synthase~PRIAM: Glutamate synthase (NADPH)~SPTR: Glutamate synthase (NADPH) GltB2 subunit%3B~IMG reference gene:2505284226~PFAM: 4Fe-4S binding domain%3B Conserved region in glutamate synthase gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0920 Thein_0921 Thein_0921 Thein_0921 972135 972941 + ATP-NAD/AcoX kinase COGs: COG0061 sugar kinase~InterPro IPR002504~KEGG: geo:Geob_3461 ATP-NAD/AcoX kinase~PFAM: ATP-NAD/AcoX kinase~SPTR: Probable inorganic polyphosphate/ATP-NAD kinase%3B~IMG reference gene:2505284227~PFAM: ATP-NAD kinase gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0921 Thein_0922 Thein_0922 Thein_0922 972938 973369 - hypothetical protein KEGG: tye:THEYE_A1391 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284228 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0922 Thein_0923 Thein_0923 Thein_0923 973366 974040 - pseudogene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0923 Thein_0924 Thein_0924 Thein_0924 974167 975453 + Uncharacterized conserved protein UCP033563 COGs: COG4198 conserved hypothetical protein~InterPro IPR008323~KEGG: chy:CHY_1063 hypothetical protein~PFAM: Uncharacterised conserved protein UCP033563~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284230~PFAM: Protein of unknown function (DUF1015) gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0924 Thein_0925 Thein_0925 Thein_0925 975454 975939 + hypothetical protein KEGG: apo:Arcpr_0951 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284231 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0925 Thein_0926 Thein_0926 Thein_0926 976058 978391 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterProIPR016131:IPR004089:IPR004090:IPR003660:IPR 012312:IPR012827~KEGG: mgm:Mmc1_0310 methyl-accepting chemotaxis sensory transducer~PFAM: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein%3B Hemerythrin HHE cation binding domain protein~SMART: chemotaxis sensory transducer~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~TIGRFAM: hemerythrin-like metal-binding protein~IMG reference gene:2505284232~PFAM: Hemerythrin HHE cation binding domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain~TIGRFAM: hemerythrin-like metal-binding domain gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0926 Thein_0927 Thein_0927 Thein_0927 978571 980250 + Lytic transglycosylase catalytic InterPro IPR002482:IPR008258:IPR018392~KEGG: dal:Dalk_1929 lytic transglycosylase catalytic~PFAM: Lytic transglycosylase catalytic%3B Peptidoglycan-binding lysin domain~SPTR: Lytic transglycosylase catalytic%3B~IMG reference gene:2505284233~PFAM: Transglycosylase SLT domain%3B LysM domain gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0927 Thein_0928 Thein_0928 Thein_0928 980472 981113 + nuclease (SNase domain-containing protein) COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs~InterPro IPR006021~KEGG: dal:Dalk_0740 nuclease (SNase domain protein)~PFAM: nuclease (SNase domain-containing protein)~SMART: nuclease (SNase domain-containing protein)~SPTR: Nuclease (SNase domain protein)%3B~IMG reference gene:2505284235~PFAM: Staphylococcal nuclease homologue gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0928 Thein_0929 Thein_0929 Thein_0929 981303 982394 + Prephenate dehydratase COGs: COG0077 Prephenate dehydratase~InterProIPR018528:IPR020822:IPR001086:IPR002912:IPR 008242:IPR002701~KEGG: dak:DaAHT2_0619 prephenate dehydratase~PFAM: prephenate dehydratase%3B Chorismate mutase%2C type II%3B amino acid-binding ACT domain protein~PRIAM: Prephenate dehydratase~SPTR: Prephenate dehydratase:Chorismate mutase:Amino acid-binding ACT%3B~IMG reference gene:2505284236~PFAM: Prephenate dehydratase%3B ACT domain%3B Chorismate mutase type II gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0929 Thein_0930 Thein_0930 Thein_0930 982358 982891 + hypothetical protein KEGG: dal:Dalk_0095 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284237 gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0930 Thein_0931 Thein_0931 Thein_0931 982895 983134 + regulatory protein%2C FmdB family COGs: COG2331 conserved hypothetical protein~InterPro IPR013429~KEGG: dal:Dalk_4244 regulatory protein%2C FmdB family~PFAM: Putative regulatory protein FmdB~SPTR: Regulatory protein%2C FmdB family%3B~TIGRFAM: regulatory protein%2C FmdB family~IMG reference gene:2505284238~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0931 Thein_0932 Thein_0932 Thein_0932 983561 984220 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR006036:IPR003148:IPR006037~KEGG: dba:Dbac_0339 TrkA-N domain protein~PFAM: TrkA-N domain protein%3B TrkA-C domain protein~SPTR: TrkA-N domain protein%3B~IMG reference gene:2505284239~PFAM: TrkA-N domain%3B TrkA-C domain gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0932 Thein_0933 Thein_0933 Thein_0933 984223 985587 - H(+)-transporting two-sector ATPase COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: sat:SYN_01091 potassium uptake protein~PFAM: cation transporter~PRIAM: H(+)-transporting two-sector ATPase~SPTR: K+ transporter Trk%3B~IMG reference gene:2505284240~PFAM: Cation transport protein~TIGRFAM: potassium uptake protein%2C TrkH family gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0933 Thein_0934 Thein_0934 Thein_0934 985562 987196 - amino acid permease-associated region COGs: COG0531 Amino acid transporter~InterPro IPR004841:IPR002293~KEGG: nis:NIS_0790 amino acid transporter~PFAM: amino acid permease-associated region~SPTR: Amino acid transporter%3B~IMG reference gene:2505284241~PFAM: Amino acid permease gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0934 Thein_0935 Thein_0935 Thein_0935 987405 988736 + RNA modification enzyme%2C MiaB family COGs: COG0621 2-methylthioadenine synthetase~InterProIPR020612:IPR006638:IPR006463:IPR013848:IPR 007197:IPR002792:IPR005839~KEGG: dak:DaAHT2_0803 RNA modification enzyme%2C MiaB family~PFAM: protein of unknown function UPF0004 %3B Radical SAM domain protein%3B deoxyribonuclease/rho motif-related TRAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: RNA modification enzyme%2C MiaB family%3B~TIGRFAM: RNA modification enzyme%2C MiaB family%3B tRNA-i(6)A37 thiotransferase enzyme MiaB~IMG reference gene:2505284242~PFAM: TRAM domain%3B Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: MiaB-like tRNA modifying enzyme%3B tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0935 Thein_0936 Thein_0936 Thein_0936 988737 989255 + protein of unknown function DUF151 COGs: COG1259 conserved hypothetical protein~InterPro IPR003729~KEGG: sfu:Sfum_0418 hypothetical protein~PFAM: protein of unknown function DUF151~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284243~PFAM: Spumavirus aspartic protease (A9)%3B Uncharacterised ACR%2C COG1259 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0936 Thein_0937 Thein_0937 Thein_0937 989258 989902 + PHP domain protein COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family~InterPro IPR003141:IPR004013~KEGG: dak:DaAHT2_0804 PHP domain protein~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein~SPTR: PHP domain protein%3B~IMG reference gene:2505284244~PFAM: PHP domain gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0937 Thein_0938 Thein_0938 Thein_0938 989930 992038 + UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR000212:IPR014016:IPR014017~KEGG: nde:NIDE1291 ATP-dependent DNA helicase~PFAM: UvrD/REP helicase~SPTR: UvrD/REP helicase%3B~IMG reference gene:2505284245~PFAM: UvrD/REP helicase gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0938 Thein_0939 Thein_0939 Thein_0939 992292 993092 - Prephenate dehydrogenase COGs: COG0287 Prephenate dehydrogenase~InterPro IPR004455:IPR003099~KEGG: dal:Dalk_1765 prephenate dehydrogenase~PFAM: Prephenate dehydrogenase%3B NADP oxidoreductase coenzyme F420-dependent~SPTR: Prephenate dehydrogenase%3B~IMG reference gene:2505284246~PFAM: Prephenate dehydrogenase gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0939 Thein_0940 Thein_0940 Thein_0940 993076 993375 - binding-protein-dependent transport systems inner membrane component KEGG: chl:Chy400_3406 binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2505284247 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0940 Thein_0941 Thein_0941 Thein_0941 993492 994349 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284248 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0941 Thein_0942 Thein_0942 Thein_0942 994567 996105 + transcriptional regulator%2C NifA subfamily%2C Fis Family COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains~InterProIPR002078:IPR003018:IPR003593:IPR020441:IPR 002197~KEGG: dak:DaAHT2_1641 transcriptional regulator%2C NifA subfamily%2C fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B GAF domain protein%3B helix-turn-helix Fis-type~SMART: GAF domain protein%3B AAA ATPase~SPTR: Transcriptional regulator%2C NifA subfamily%2C Fis Family%3B~IMG reference gene:2505284249~PFAM: GAF domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain~TIGRFAM: Nif-specific regulatory protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0942 Thein_0943 Thein_0943 Thein_0943 996107 997327 + Polynucleotide adenylyltransferase region COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR002646~KEGG: dak:DaAHT2_1536 polynucleotide adenylyltransferase~PFAM: Polynucleotide adenylyltransferase region~SPTR: Polynucleotide adenylyltransferase%3B~IMG reference gene:2505284250~PFAM: Poly A polymerase head domain~TIGRFAM: poly(A) polymerase gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0943 Thein_0944 Thein_0944 Thein_0944 997324 997992 - haloacid dehalogenase%2C type II COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005833:IPR005834:IPR006328:IPR006388~KEGG: abi:Aboo_0736 haloacid dehalogenase%2C type II~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: Haloacid dehalogenase%2C type II%3B~TIGRFAM: haloacid dehalogenase%2C type II%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 2 (HAD-like)~IMG reference gene:2505284251~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: Haloacid dehalogenase superfamily%2C subfamily IA%2C variant 2 with 3rd motif like haloacid dehalogenase%3B 2-haloalkanoic acid dehalogenase%2C type II gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0944 Thein_0945 Thein_0945 Thein_0945 997976 998287 - hypothetical protein KEGG: ngr:NAEGRDRAFT_72219 hypothetical protein~SPTR: Predicted protein%3B~IMG reference gene:2505284252 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0945 Thein_0946 Thein_0946 Thein_0946 998467 999234 + metallo-beta-lactamase family protein COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III~KEGG: det:DET1628 metallo-beta-lactamase family protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284253~PFAM: Metallo-beta-lactamase superfamily gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0946 Thein_0947 Thein_0947 Thein_0947 999295 999831 + phosphoribosyltransferase COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase~InterPro IPR006118:IPR000836~KEGG: slp:Slip_0837 uracil phosphoribosyltransferase~PFAM: phosphoribosyltransferase~SPTR: Uracil phosphoribosyltransferase%3B~IMG reference gene:2505284254~PFAM: Phosphoribosyl transferase domain gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0947 Thein_0948 Thein_0948 Thein_0948 999815 1000621 + biotin/acetyl-CoA-carboxylase ligase COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase~InterPro IPR004143:IPR003142:IPR004408~KEGG: afl:Aflv_1125 biotin operon repressor containing HTH and biotin-(acetyl-CoA carboxylase) ligase domains~PFAM: biotin/lipoate A/B protein ligase%3B biotin protein ligase domain protein~SPTR: Biotin--acetyl-CoA-carboxylase ligase%3B~TIGRFAM: biotin/acetyl-CoA-carboxylase ligase~IMG reference gene:2505284255~PFAM: Biotin/lipoate A/B protein ligase family~TIGRFAM: birA%2C biotin-[acetyl-CoA-carboxylase] ligase region gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0948 Thein_0949 Thein_0949 Thein_0949 1000839 1001879 + anthranilate phosphoribosyltransferase COGs: COG0547 Anthranilate phosphoribosyltransferase~InterPro IPR005940:IPR017459:IPR000312~KEGG: dol:Dole_1567 anthranilate phosphoribosyltransferase~PFAM: glycosyl transferase family 3%3B Glycosyl transferase%2C family 3-like~SPTR: Anthranilate phosphoribosyltransferase%3B~TIGRFAM: anthranilate phosphoribosyltransferase~IMG reference gene:2505284256~PFAM: Glycosyl transferase family%2C a/b domain%3B Glycosyl transferase family%2C helical bundle domain~TIGRFAM: anthranilate phosphoribosyltransferase gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0949 Thein_0950 Thein_0950 Thein_0950 1001876 1002910 + protein of unknown function DUF933 COGs: COG0012 GTPase probable translation factor~InterPro IPR006073:IPR013029:IPR004396~KEGG: dal:Dalk_1131 protein of unknown function DUF933~PFAM: protein of unknown function DUF933~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284257~PFAM: Protein of unknown function (DUF933)~TIGRFAM: GTP-binding protein YchF gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0950 Thein_0951 Thein_0951 Thein_0951 1002919 1004223 + MiaB-like tRNA modifying enzyme COGs: COG0621 2-methylthioadenine synthetase~InterProIPR020612:IPR006638:IPR013848:IPR007197:IPR 005839:IPR006467:IPR002792~KEGG: glo:Glov_2224 MiaB-like tRNA modifying enzyme~PFAM: protein of unknown function UPF0004 %3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: MiaB-like tRNA modifying enzyme%3B~TIGRFAM: MiaB-like tRNA modifying enzyme%3B RNA modification enzyme%2C MiaB family~IMG reference gene:2505284258~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: MiaB-like tRNA modifying enzyme%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0951 Thein_0952 Thein_0952 Thein_0952 1004303 1004977 + hypothetical protein KEGG: ddf:DEFDS_0515 cardiolipin synthetase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284259 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0952 Thein_0953 Thein_0953 Thein_0953 1004986 1005660 + endonuclease III COGs: COG0177 EndoIII-related endonuclease~InterProIPR004035:IPR004036:IPR003265:IPR003651:IPR 005759~KEGG: dtu:Dtur_0683 endonuclease III~PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop~PRIAM: DNA-(apurinic or apyrimidinic site) lyase~SMART: HhH-GPD family protein%3B iron-sulfur cluster loop~SPTR: Endonuclease III%3B~TIGRFAM: endonuclease III~IMG reference gene:2505284260~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Iron-sulfur binding domain of endonuclease III~TIGRFAM: endonuclease III gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0953 Thein_0954 Thein_0954 Thein_0954 1005827 1006906 + peptidase M20 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase~InterPro IPR002933:IPR011650~KEGG: abi:Aboo_0171 peptidase M20~PFAM: peptidase M20%3B peptidase dimerisation domain protein~SPTR: Peptidase family M20/M25/M40%3B~IMG reference gene:2505284262~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0954 Thein_0955 Thein_0955 Thein_0955 1006822 1007382 - GCN5-related N-acetyltransferase COGs: COG0456 Acetyltransferase~InterPro IPR000182~KEGG: adg:Adeg_1670 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: GCN5-related N-acetyltransferase%3B~IMG reference gene:2505284263~PFAM: Acetyltransferase (GNAT) family gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0955 Thein_0956 Thein_0956 Thein_0956 1007446 1008864 + hypothetical protein KEGG: nmr:Nmar_1084 metallophosphoesterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284264 gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0956 Thein_0957 Thein_0957 Thein_0957 1008838 1009935 - 3-dehydroquinate synthase COGs: COG0337 3-dehydroquinate synthetase~InterPro IPR016037:IPR002658:IPR016303~KEGG: dak:DaAHT2_0294 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase~PRIAM: 3-dehydroquinate synthase~SPTR: 3-dehydroquinate synthase%3B~TIGRFAM: 3-dehydroquinate synthase~IMG reference gene:2505284265~PFAM: 3-dehydroquinate synthase~TIGRFAM: 3-dehydroquinate synthase gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0957 Thein_0958 Thein_0958 Thein_0958 1010072 1010698 + Lysine exporter protein (LYSE/YGGA) COGs: COG1280 Putative threonine efflux protein~InterPro IPR001123~KEGG: pfl:PFL_5120 amino acid transporter LysE~PFAM: Lysine exporter protein (LYSE/YGGA)~SPTR: Transporter%2C LysE family%3B~IMG reference gene:2505284266~PFAM: LysE type translocator~TIGRFAM: The Resistance to Homoserine/Threonine (RhtB) Family protein gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0958 Thein_0959 Thein_0959 Thein_0959 1010711 1011544 + hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha subunit COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain~InterPro IPR004646~KEGG: drm:Dred_1872 fumarate hydratase~PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region~PRIAM: Fumarate hydratase~SPTR: Fumarase alpha subunit%3B~TIGRFAM: hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha subunit~IMG reference gene:2505284267~PFAM: Fumarate hydratase (Fumerase)~TIGRFAM: hydro-lyases%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha region gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0959 Thein_0960 Thein_0960 Thein_0960 1011554 1012027 + hypothetical protein COGs: COG4087 Soluble P-type ATPase~KEGG: dvm:DvMF_1180 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284268~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0960 Thein_0961 Thein_0961 Thein_0961 1012216 1012815 + alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen COGs: COG0450 Peroxiredoxin~InterPro IPR000866:IPR019479:IPR017936~KEGG: dae:Dtox_2806 peroxiredoxin~PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Peroxiredoxin-like~SPTR: Peroxiredoxin%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505284269~PFAM: C-terminal domain of 1-Cys peroxiredoxin%3B AhpC/TSA family gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0961 Thein_0962 Thein_0962 Thein_0962 1012892 1013053 + Rubredoxin-type Fe(Cys)4 protein COGs: COG1773 Rubredoxin~InterPro IPR018527:IPR001052:IPR004039~KEGG: pmo:Pmob_1630 rubredoxin-type Fe(Cys)4 protein~PFAM: Rubredoxin-type Fe(Cys)4 protein~SPTR: Rubredoxin%3B~IMG reference gene:2505284270~PFAM: Rubredoxin gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0962 Thein_0963 Thein_0963 Thein_0963 1013213 1013984 - pseudogene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0963 Thein_0964 Thein_0964 Thein_0964 1014206 1015444 + transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: sul:SYO3AOP1_1539 transposase mutator type~PFAM: transposase mutator type~SPTR: Transposase mutator type%3B~IMG reference gene:2505284272~PFAM: Transposase%2C Mutator family gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0964 Thein_0965 Thein_0965 Thein_0965 1015496 1016203 + pseudogene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0965 Thein_0966 Thein_0966 Thein_0966 1016409 1016621 - hypothetical protein KEGG: smm:Smp_160620.1 subfamily M12B unassigned peptidase (M12 family)~SPTR: Subfamily M12B unassigned peptidase (M12 family)%3B~IMG reference gene:2505284274 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0966 Thein_0967 Thein_0967 Thein_0967 1016799 1017854 + hypothetical protein COGs: COG1085 Galactose-1-phosphate uridylyltransferase~KEGG: sfu:Sfum_1834 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284275 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0967 Thein_0968 Thein_0968 Thein_0968 1017876 1018421 + phosphoesterase PA-phosphatase related protein InterPro IPR000326~KEGG: pin:Ping_1712 phosphoesterase%2C PA-phosphatase related~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related~SPTR: Phosphoesterase%2C PA-phosphatase related%3B~IMG reference gene:2505284276~PFAM: PAP2 superfamily gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0968 Thein_0969 Thein_0969 Thein_0969 1018489 1019262 + oxidoreductase FAD/NAD(P)-binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterPro IPR001433:IPR019480:IPR012165:IPR017927~KEGG: gem:GM21_1819 oxidoreductase FAD/NAD(P)-binding domain protein~PFAM: oxidoreductase FAD/NAD(P)-binding domain protein%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein%3B~IMG reference gene:2505284277~PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0969 Thein_0970 Thein_0970 Thein_0970 1019259 1020854 - imidazoleglycerol phosphate synthase%2C cyclase subunit COGs: COG0107 Imidazoleglycerol-phosphate synthase~InterProIPR010139:IPR000991:IPR006062:IPR014640:IPR 004651:IPR017926~KEGG: dps:DP2167 bifunctional histidine biosynthesis protein (HisHF)~PFAM: histidine biosynthesis protein%3B glutamine amidotransferase class-I~SPTR: Related to bifunctional histidine biosynthesis protein (HisHF)%3B~TIGRFAM: imidazoleglycerol phosphate synthase%2C cyclase subunit%3B imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit~IMG reference gene:2505284278~PFAM: Glutamine amidotransferase class-I%3B Histidine biosynthesis protein~TIGRFAM: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit%3B imidazoleglycerol phosphate synthase%2C cyclase subunit gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0970 Thein_0971 Thein_0971 Thein_0971 1020929 1021708 - hypothetical protein KEGG: tye:THEYE_A1521 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284279 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0971 Thein_0972 Thein_0972 Thein_0972 1022074 1024089 - Pyruvate carboxylase COGs: COG1038 Pyruvate carboxylase~InterPro IPR001882:IPR000891:IPR003379:IPR000089~KEGG: cts:Ctha_2637 oxaloacetate decarboxylase~PFAM: biotin/lipoyl attachment domain-containing protein%3B Conserved carboxylase region%3B pyruvate carboxyltransferase~PRIAM: Pyruvate carboxylase~SPTR: Oxaloacetate decarboxylase%3B~IMG reference gene:2505284281~PFAM: HMGL-like%3B Biotin-requiring enzyme%3B Conserved carboxylase domain gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0972 Thein_0973 Thein_0973 Thein_0973 1024102 1025559 - Carbamoyl-phosphate synthase L chain ATP-binding protein COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit~InterProIPR005479:IPR005481:IPR005482:IPR011761:IPR 011764~KEGG: rca:Rcas_2955 carbamoyl-phosphate synthase L chain ATP-binding~PFAM: Carbamoyl-phosphate synthase L chain ATP-binding%3B Carbamoyl-phosphate synthetase large chain domain protein%3B biotin carboxylase domain protein~SPTR: Carbamoyl-phosphate synthase L chain ATP-binding%3B~IMG reference gene:2505284282~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain%3B Biotin carboxylase C-terminal domain%3B Carbamoyl-phosphate synthase L chain%2C N-terminal domain gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0973 Thein_0974 Thein_0974 Thein_0974 1026074 1028422 - diguanylate cyclase/phosphodiesterase with GAF sensor COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain~InterPro IPR000160:IPR001633:IPR003018~KEGG: rfr:Rfer_1825 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~PFAM: EAL domain protein%3B GGDEF domain containing protein%3B GAF domain protein~SMART: EAL domain protein%3B GGDEF domain containing protein~SPTR: Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)%3B~TIGRFAM: diguanylate cyclase~IMG reference gene:2505284283~PFAM: EAL domain%3B GGDEF domain%3B GAF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0974 Thein_0975 Thein_0975 Thein_0975 1029110 1030816 - sodium/hydrogen exchanger COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component~InterPro IPR006153:IPR003148~KEGG: dol:Dole_0855 sodium/hydrogen exchanger~PFAM: sodium/hydrogen exchanger%3B TrkA-N domain protein~SPTR: Sodium/hydrogen exchanger%3B~IMG reference gene:2505284284~PFAM: TrkA-N domain%3B Sodium/hydrogen exchanger family~TIGRFAM: transporter%2C monovalent cation:proton antiporter-2 (CPA2) family gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0975 Thein_0976 Thein_0976 Thein_0976 1030999 1031490 - protein of unknown function DUF901 COGs: COG3688 RNA-binding protein containing a PIN domain~InterPro IPR010298~KEGG: sat:SYN_01764 putative cytoplasmic protein~PFAM: protein of unknown function DUF901~SPTR: Hypothetical cytosolic protein%3B~IMG reference gene:2505284285~PFAM: Protein of unknown function (DUF901) gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0976 Thein_0977 Thein_0977 Thein_0977 1031490 1032344 - parB-like partition protein COGs: COG1475 transcriptional regulator protein~InterPro IPR003115:IPR004437~KEGG: dak:DaAHT2_2007 ParB-like partition protein~PFAM: ParB domain protein nuclease~SMART: ParB domain protein nuclease~SPTR: Putative uncharacterized protein%3B~TIGRFAM: parB-like partition protein~IMG reference gene:2505284286~PFAM: ParB-like nuclease domain%3B KorB domain~TIGRFAM: ParB-like partition proteins gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0977 Thein_0978 Thein_0978 Thein_0978 1032331 1033104 - cobyrinic acid a%2Cc-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~KEGG: ppd:Ppro_0583 cobyrinic acid a%2Cc-diamide synthase~SPTR: Chromosome segregation ATPase%3B~IMG reference gene:2505284287~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0978 Thein_0979 Thein_0979 Thein_0979 1033107 1033865 - 5-formyltetrahydrofolate cyclo-ligase COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase~InterPro IPR002698~KEGG: tag:Tagg_1069 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase~SPTR: 5-formyltetrahydrofolate cyclo-ligase%3B~IMG reference gene:2505284288~PFAM: 5-formyltetrahydrofolate cyclo-ligase family gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0979 Thein_0980 Thein_0980 Thein_0980 1033873 1034571 + rare lipoprotein A COGs: COG0797 Lipoprotein~InterPro IPR005132:IPR007730:IPR012997~KEGG: dak:DaAHT2_1328 rare lipoprotein A~PFAM: Rare lipoprotein A%3B Sporulation domain-containing protein~SPTR: Rare lipoprotein A%3B~TIGRFAM: rare lipoprotein A~IMG reference gene:2505284289~PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel%3B Sporulation related domain~TIGRFAM: rare lipoprotein A gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0980 Thein_0981 Thein_0981 Thein_0981 1034572 1035549 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR017871:IPR003593:IPR003439:IPR013563:IPR 010066~KEGG: apo:Arcpr_0085 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Oligopeptide/dipeptide ABC transporter%2C ATPase subunit%3B~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~IMG reference gene:2505284290~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0981 Thein_0982 Thein_0982 Thein_0982 1035539 1036477 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR017871:IPR003593:IPR003439:IPR013563:IPR 010066~KEGG: apo:Arcpr_0086 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Oligopeptide/dipeptide ABC transporter%2C ATPase subunit%3B~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~IMG reference gene:2505284291~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0982 Thein_0983 Thein_0983 Thein_0983 1036487 1037326 - binding-protein-dependent transport systems inner membrane component COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: apo:Arcpr_0087 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2505284292~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0983 Thein_0984 Thein_0984 Thein_0984 1037337 1038350 - binding-protein-dependent transport systems inner membrane component COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: fpl:Ferp_1497 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2505284293~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0984 Thein_0985 Thein_0985 Thein_0985 1038421 1039947 - extracellular solute-binding protein family 5 COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: apo:Arcpr_0089 extracellular solute-binding protein family 5~PFAM: extracellular solute-binding protein family 5~SPTR: Extracellular solute-binding protein family 5%3B~IMG reference gene:2505284294~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0985 Thein_0986 Thein_0986 Thein_0986 1040349 1041095 + ribonuclease III COGs: COG0571 dsRNA-specific ribonuclease~InterPro IPR000999:IPR001159:IPR011907~KEGG: sfu:Sfum_0876 ribonuclease III~PFAM: ribonuclease III%3B double-stranded RNA binding domain protein~PRIAM: Ribonuclease III~SMART: ribonuclease III%3B double-stranded RNA binding domain protein~SPTR: Ribonuclease 3%3B~TIGRFAM: ribonuclease III~IMG reference gene:2505284295~PFAM: Double-stranded RNA binding motif%3B RNase3 domain~TIGRFAM: ribonuclease III%2C bacterial gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0986 Thein_0987 Thein_0987 Thein_0987 1041070 1041990 + GTP-binding protein Era COGs: COG1159 GTPase~InterProIPR005662:IPR006073:IPR002917:IPR004044:IPR 005225~KEGG: dps:DP1689 GTP-binding protein Era-like protein~PFAM: GTP-binding protein HSR1-related%3B KH type 2 domain protein~SPTR: GTP-binding protein era homolog%3B~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein~IMG reference gene:2505284296~PFAM: KH domain%3B GTPase of unknown function~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein domain gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0987 Thein_0988 Thein_0988 Thein_0988 1042125 1043033 + UDP-3-0-acyl N-acetylglucosamine deacetylase COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase~InterPro IPR004463~KEGG: mxa:MXAN_4967 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase~PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase~SPTR: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase%3B~TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase~IMG reference gene:2505284297~PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase~TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0988 Thein_0989 Thein_0989 Thein_0989 1043197 1044471 + competence/damage-inducible protein CinA COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced)~InterPro IPR001453:IPR008136:IPR008135~KEGG: dps:DP2957 competence-damage inducible protein (CinA)~PFAM: CinA domain protein%3B molybdopterin binding domain~SPTR: CinA-like protein%3B~TIGRFAM: competence/damage-inducible protein CinA~IMG reference gene:2505284298~PFAM: Probable molybdopterin binding domain%3B Competence-damaged protein~TIGRFAM: competence/damage-inducible protein CinA N-terminal domain%3B competence/damage-inducible protein CinA C-terminal domain%3B molybdenum cofactor synthesis domain gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0989 Thein_0990 Thein_0990 Thein_0990 1044428 1045003 + 2'-5' RNA ligase COGs: COG1514 2'-5' RNA ligase~InterPro IPR014051:IPR004175~KEGG: sfu:Sfum_2529 2'-5' RNA ligase~PFAM: Phosphoesterase HXTX~SPTR: 2'-5' RNA ligase%3B~TIGRFAM: 2'-5' RNA ligase~IMG reference gene:2505284299~PFAM: 2'%2C5' RNA ligase family~TIGRFAM: 2'-5' RNA ligase gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0990 Thein_0991 Thein_0991 Thein_0991 1045358 1046632 - dihydroorotase%2C multifunctional complex type COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase~InterPro IPR002195:IPR006680:IPR004722~KEGG: gme:Gmet_1770 dihydroorotase~PFAM: amidohydrolase~SPTR: Dihydroorotase%3B~TIGRFAM: dihydroorotase%2C multifunctional complex type~IMG reference gene:2505284300~PFAM: Amidohydrolase family~TIGRFAM: dihydroorotase%2C multifunctional complex type gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0991 Thein_0992 Thein_0992 Thein_0992 1046629 1047552 - aspartate carbamoyltransferase COGs: COG0540 Aspartate carbamoyltransferase catalytic chain~InterPro IPR006130:IPR002082:IPR006132:IPR006131~KEGG: tjr:TherJR_1833 aspartate carbamoyltransferase~PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain%3B aspartate/ornithine carbamoyltransferase Asp/Orn-binding region~PRIAM: Aspartate carbamoyltransferase~SPTR: Aspartate carbamoyltransferase%3B~TIGRFAM: aspartate carbamoyltransferase~IMG reference gene:2505284301~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain~TIGRFAM: aspartate carbamoyltransferase gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0992 Thein_0993 Thein_0993 Thein_0993 1047608 1048129 - Ferroxidase COGs: COG1528 Ferritin-like protein~InterPro IPR008331:IPR009040~KEGG: drt:Dret_0514 ferroxidase~PFAM: Ferritin Dps family protein~PRIAM: Ferroxidase~SPTR: Ferroxidase%3B~IMG reference gene:2505284302~PFAM: Ferritin-like domain gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0993 Thein_0994 Thein_0994 Thein_0994 1048152 1049351 - acetylornithine and succinylornithine aminotransferase COGs: COG4992 Ornithine/acetylornithine aminotransferase~InterPro IPR005814:IPR004636~KEGG: tte:TTE2495 PLP-dependent aminotransferase~PFAM: aminotransferase class-III~PRIAM: Acetylornithine transaminase~SPTR: Acetylornithine and succinylornithine aminotransferases subfamily%3B~TIGRFAM: acetylornithine and succinylornithine aminotransferase~IMG reference gene:2505284303~PFAM: Aminotransferase class-III~TIGRFAM: acetylornithine and succinylornithine aminotransferases gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0994 Thein_0995 Thein_0995 Thein_0995 1049525 1049731 + cold-shock DNA-binding domain protein COGs: COG1278 Cold shock protein~InterPro IPR019844:IPR011129:IPR002059:IPR012156~KEGG: tma:TM1683 cold shock protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein~SPTR: Cold shock-like protein%3B~IMG reference gene:2505284304~PFAM: 'Cold-shock' DNA-binding domain gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0995 Thein_0996 Thein_0996 Thein_0996 1049777 1050511 - 3-deoxy-D-manno-octulosonatecytidylyltransferase COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase~InterPro IPR004528:IPR003329~KEGG: dak:DaAHT2_0943 3-deoxy-D-manno-octulosonate cytidylyltransferase~PFAM: acylneuraminate cytidylyltransferase~PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase~SPTR: 3-deoxy-D-manno-octulosonate cytidylyltransferase%3B~TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase~IMG reference gene:2505284305~PFAM: Cytidylyltransferase~TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0996 Thein_0997 Thein_0997 Thein_0997 1050580 1050921 + Cupin 2 conserved barrel domain protein COGs: COG0662 Mannose-6-phosphate isomerase~InterPro IPR013096~KEGG: tye:THEYE_A1401 cupin domain protein~PFAM: Cupin 2 conserved barrel domain protein~SPTR: Cupin 2 conserved barrel domain protein%3B~IMG reference gene:2505284306~PFAM: Cupin domain gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0997 Thein_0998 Thein_0998 Thein_0998 1050943 1051326 + Phosphoribosyl-AMP cyclohydrolase COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase~InterPro IPR002496~KEGG: dsa:Desal_3796 phosphoribosyl-AMP cyclohydrolase~PFAM: phosphoribosyl-AMP cyclohydrolase~PRIAM: Phosphoribosyl-AMP cyclohydrolase~SPTR: Phosphoribosyl-AMP cyclohydrolase%3B~IMG reference gene:2505284307~PFAM: Phosphoribosyl-AMP cyclohydrolase gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0998 Thein_0999 Thein_0999 Thein_0999 1051310 1052185 + ATP phosphoribosyltransferase COGs: COG0040 ATP phosphoribosyltransferase~InterPro IPR018198:IPR020621:IPR013820:IPR013115~KEGG: dak:DaAHT2_1355 ATP phosphoribosyltransferase~PFAM: ATP phosphoribosyltransferase catalytic region%3B Histidine biosynthesis protein HisG domain~PRIAM: ATP phosphoribosyltransferase~SPTR: ATP phosphoribosyltransferase%3B~TIGRFAM: ATP phosphoribosyltransferase~IMG reference gene:2505284308~PFAM: HisG%2C C-terminal domain%3B ATP phosphoribosyltransferase~TIGRFAM: ATP phosphoribosyltransferase%2C C-terminal domain%3B ATP phosphoribosyltransferase gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_0999 Thein_1000 Thein_1000 Thein_1000 1052449 1053219 + Tetratricopeptide TPR_1 repeat-containing protein COGs: COG3063 Tfp pilus assembly protein PilF~InterPro IPR019734:IPR001440:IPR013026~KEGG: dal:Dalk_4399 tetratricopeptide TPR_2 repeat protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SPTR: Tetratricopeptide TPR_2 repeat protein%3B~IMG reference gene:2505284309~PFAM: Tetratricopeptide repeat~TIGRFAM: type IV pilus biogenesis/stability protein PilW gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1000 Thein_1001 Thein_1001 Thein_1001 1053220 1053444 - hypothetical protein KEGG: tye:THEYE_A0874 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284310~PFAM: Protein of unknown function (DUF2905) gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1001 Thein_1002 Thein_1002 Thein_1002 1053431 1054018 - protein of unknown function DUF208 COGs: COG1636 conserved hypothetical protein~InterPro IPR003828~KEGG: ddf:DEFDS_1431 hypothetical protein~PFAM: protein of unknown function DUF208~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284311~PFAM: Uncharacterized BCR%2C COG1636 gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1002 Thein_1003 Thein_1003 Thein_1003 1054413 1055531 + DNA polymerase III%2C beta subunit COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)~InterPro IPR001001~KEGG: ank:AnaeK_0002 DNA polymerase III%2C beta subunit~PFAM: DNA polymerase III beta chain~PRIAM: DNA-directed DNA polymerase~SMART: DNA polymerase III beta chain~SPTR: DNA polymerase III%2C beta subunit%3B~TIGRFAM: DNA polymerase III%2C beta subunit~IMG reference gene:2505284312~PFAM: DNA polymerase III beta subunit%2C C-terminal domain%3B DNA polymerase III beta subunit%2C N-terminal domain%3B DNA polymerase III beta subunit%2C central domain~TIGRFAM: DNA polymerase III%2C beta subunit gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1003 Thein_1004 Thein_1004 Thein_1004 1055534 1057918 + DNA gyrase%2C B subunit COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterProIPR018522:IPR003594:IPR001241:IPR000565:IPR 013506:IPR006171:IPR002288:IPR011557~KEGG: dak:DaAHT2_2107 DNA gyrase%2C B subunit~PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein%3B ATP-binding region ATPase domain protein%3B TOPRIM domain-containing protein%3B DNA gyrase subunit B domain protein~SMART: DNA topoisomerase II%3B ATP-binding region ATPase domain protein~SPTR: DNA gyrase subunit B%3B~TIGRFAM: DNA gyrase%2C B subunit~IMG reference gene:2505284313~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus~TIGRFAM: DNA gyrase%2C B subunit gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1004 Thein_1005 Thein_1005 Thein_1005 1057927 1058130 + hypothetical protein KEGG: dol:Dole_2595 hypothetical protein~SPTR: Conserved hypothetical cytosolic protein%3B~IMG reference gene:2505284314 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1005 Thein_1006 Thein_1006 Thein_1006 1058826 1059548 - protein of unknown function DUF1555 InterPro IPR011449:IPR013424~KEGG: tmz:Tmz1t_1138 protein of unknown function DUF1555~PFAM: protein of unknown function DUF1555~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284316~PFAM: PEP-CTERM motif~TIGRFAM: PEP-CTERM putative exosortase interaction domain gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1006 Thein_1007 Thein_1007 Thein_1007 1059873 1060691 + Nickel transport complex%2C NikM subunit%2C transmembrane COGs: COG5266 ABC-type Co2+ transport system periplasmic component~InterPro IPR019613~KEGG: ddf:DEFDS_0032 cobalt ABC transporter substrate-binding protein~PFAM: Nickel transport complex%2C NikM subunit%2C transmembrane~SPTR: Cobalt ABC transporter%2C substrate-binding protein%3B~IMG reference gene:2505284317~PFAM: Nickel uptake substrate-specific transmembrane region gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1007 Thein_1008 Thein_1008 Thein_1008 1060691 1061296 + cobalamin (vitamin B12) biosynthesis CbiM protein COGs: COG0310 ABC-type Co2+ transport system permease component~InterPro IPR002751~KEGG: dsa:Desal_0774 cobalt transport protein CbiM~PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein~SPTR: Cobalamin (Vitamin B12) biosynthesis CbiM protein%3B~IMG reference gene:2505284318~PFAM: Cobalt uptake substrate-specific transmembrane region~TIGRFAM: cobalamin biosynthesis protein CbiM gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1008 Thein_1009 Thein_1009 Thein_1009 1061298 1061897 + hypothetical protein KEGG: aco:Amico_0065 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284319 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1009 Thein_1010 Thein_1010 Thein_1010 1061873 1062619 + cobalt ABC transporter%2C inner membrane subunit CbiQ COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter~InterPro IPR003339:IPR012809~KEGG: tye:THEYE_A1922 cobalt ABC transporter%2C permease protein CbiQ~PFAM: cobalt transport protein~SPTR: Cobalt ABC transporter%2C permease protein CbiQ%3B~TIGRFAM: cobalt ABC transporter%2C inner membrane subunit CbiQ~IMG reference gene:2505284320~PFAM: Cobalt transport protein~TIGRFAM: cobalt ABC transporter%2C permease protein CbiQ gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1010 Thein_1011 Thein_1011 Thein_1011 1062630 1063337 + ABC transporter related protein COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR017871:IPR003593:IPR003439~KEGG: dsa:Desal_3208 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505284321~PFAM: ABC transporter gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1011 Thein_1012 Thein_1012 Thein_1012 1063551 1064288 + protein of unknown function UPF0153 InterPro IPR005358~KEGG: dsa:Desal_3363 protein of unknown function UPF0153~PFAM: protein of unknown function UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284322~PFAM: Uncharacterised protein family (UPF0153) gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1012 Thein_1013 Thein_1013 Thein_1013 1064343 1064780 + iojap-like protein COGs: COG0799 Iojap protein~InterPro IPR004394~KEGG: dak:DaAHT2_0640 iojap-like protein~PFAM: Iojap-related protein~SPTR: Iojap-like protein%3B~TIGRFAM: iojap-like protein~IMG reference gene:2505284323~PFAM: Domain of unknown function DUF143~TIGRFAM: iojap-like ribosome-associated protein gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1013 Thein_1014 Thein_1014 Thein_1014 1064767 1066317 + phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent COGs: COG0696 Phosphoglyceromutase~InterPro IPR005995:IPR011258:IPR006124~KEGG: ade:Adeh_0235 phosphoglyceromutase~PFAM: BPG-independent PGAM domain protein%3B metalloenzyme domain protein~PRIAM: Phosphoglycerate mutase~SPTR: Phosphoglycerate mutase%3B~TIGRFAM: phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~IMG reference gene:2505284324~PFAM: Metalloenzyme superfamily%3B BPG-independent PGAM N-terminus (iPGM_N)~TIGRFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1014 Thein_1015 Thein_1015 Thein_1015 1066305 1067657 + polyferredoxin-like protein COGs: COG0348 Polyferredoxin~KEGG: dak:DaAHT2_0879 polyferredoxin-like protein~SPTR: Polyferredoxin-like protein%3B~manually curated~IMG reference gene:2505284325 gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1015 Thein_1016 Thein_1016 Thein_1016 1067666 1068046 + 7-cyano-7-deazaguanine reductase COGs: COG0780 Enzyme related to GTP cyclohydrolase I~InterPro IPR016856:IPR020602~KEGG: tal:Thal_1252 7-cyano-7-deazaguanine reductase~PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase~PRIAM: PreQ(1) synthase~SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase%3B~TIGRFAM: 7-cyano-7-deazaguanine reductase~IMG reference gene:2505284326~PFAM: GTP cyclohydrolase I~TIGRFAM: 7-cyano-7-deazaguanine reductase gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1016 Thein_1017 Thein_1017 Thein_1017 1068198 1070195 - AsmA family protein COGs: COG2982 Uncharacterized protein involved in outer membrane biogenesis~InterPro IPR007844~KEGG: geo:Geob_2842 AsmA family protein~PFAM: AsmA family protein~SPTR: AsmA family protein%3B~IMG reference gene:2505284327~PFAM: AsmA family gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1017 Thein_1018 Thein_1018 Thein_1018 1070263 1071498 - cation diffusion facilitator family transporter COGs: COG0053 Co/Zn/Cd cation transporter~InterPro IPR002524~KEGG: mtp:Mthe_0567 cation diffusion facilitator family transporter~PFAM: cation efflux protein~SPTR: Cation diffusion facilitator family transporter%3B~TIGRFAM: cation diffusion facilitator family transporter~IMG reference gene:2505284328~PFAM: Cation efflux family~TIGRFAM: cation diffusion facilitator family transporter gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1018 Thein_1019 Thein_1019 Thein_1019 1071537 1071668 - pseudogene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1019 Thein_1020 Thein_1020 Thein_1020 1071953 1073581 - hybrid cluster protein COGs: COG1151 6Fe-6S prismane cluster-containing protein~InterPro IPR010048:IPR004137~KEGG: dae:Dtox_1609 hydroxylamine reductase~PFAM: Prismane~SPTR: Hybrid cluster protein%3B~TIGRFAM: hybrid cluster protein~IMG reference gene:2505284330~PFAM: Prismane/CO dehydrogenase family~TIGRFAM: hydroxylamine reductase gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1020 Thein_1021 Thein_1021 Thein_1021 1073652 1074326 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005833:IPR005834:IPR006402:IPR006439~KEGG: ana:alr4095 hypothetical protein~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: Alr4095 protein%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2505284331~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E%3B Haloacid dehalogenase superfamily%2C subfamily IA%2C variant 2 with 3rd motif like haloacid dehalogenase%3B REG-2-like%2C HAD superfamily (subfamily IA) hydrolase gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1021 Thein_1022 Thein_1022 Thein_1022 1074326 1075348 - Radical SAM domain protein InterPro IPR007197~KEGG: dtu:Dtur_0924 radical SAM domain protein~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505284332 gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1022 Thein_1023 Thein_1023 Thein_1023 1075338 1076540 - rfaE bifunctional protein COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase~InterProIPR001110:IPR003010:IPR004820:IPR011914:IPR 004821~KEGG: aae:aq_185 glycerol-3-phosphate cytidyltransferase~PFAM: cytidylyltransferase%3B Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: Glycerol-3-phosphate cytidyltransferase%3B~TIGRFAM: rfaE bifunctional protein%3B cytidyltransferase-related domain protein~IMG reference gene:2505284333~PFAM: Cytidylyltransferase%3B Carbon-nitrogen hydrolase~TIGRFAM: rfaE bifunctional protein%2C domain II%3B cytidyltransferase-related domain gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1023 Thein_1024 Thein_1024 Thein_1024 1076552 1077217 - phosphoribosyltransferase COGs: COG1040 amidophosphoribosyltransferase~InterPro IPR000836~KEGG: cth:Cthe_2248 phosphoribosyltransferase~PFAM: phosphoribosyltransferase~SPTR: Phosphoribosyltransferase%3B~IMG reference gene:2505284334~PFAM: Phosphoribosyl transferase domain~TIGRFAM: comF family protein gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1024 Thein_1025 Thein_1025 Thein_1025 1077426 1078922 - protease Do COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001478:IPR001940:IPR001254:IPR011782~KEGG: nhl:Nhal_1160 protease Do~PFAM: peptidase S1 and S6 chymotrypsin/Hap%3B PDZ/DHR/GLGF domain protein~PRIAM: HtrA2 peptidase~SMART: PDZ/DHR/GLGF domain protein~SPTR: Protease Do%3B~TIGRFAM: protease Do~IMG reference gene:2505284335~PFAM: Trypsin%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: periplasmic serine protease%2C Do/DeqQ family%3B periplasmic serine pepetdase DegS gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1025 Thein_1026 Thein_1026 Thein_1026 1078938 1079987 - RNA polymerase sigma factor%2C sigma-70 family InterPro IPR013249:IPR014284~KEGG: oan:Oant_4467 FliA/WhiG family RNA polymerase sigma 28 subunit~PFAM: Sigma-70 region 4 type 2~SPTR: Putative RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG family%3B~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~IMG reference gene:2505284336~PFAM: Sigma-70%2C region 4%3B Sigma 54 modulation protein / S30EA ribosomal protein~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1026 Thein_1027 Thein_1027 Thein_1027 1080000 1080950 - protein of unknown function DUF147 COGs: COG1624 conserved hypothetical protein~InterPro IPR003390~KEGG: caa:Caka_1512 protein of unknown function DUF147~PFAM: protein of unknown function DUF147~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284337~PFAM: DisA bacterial checkpoint controller nucleotide-binding gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1027 Thein_1028 Thein_1028 Thein_1028 1080907 1081743 - hypothetical protein COGs: COG3359 exonuclease~KEGG: dal:Dalk_5288 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284338 gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1028 Thein_1029 Thein_1029 Thein_1029 1081743 1082606 - PpiC-type peptidyl-prolyl cis-trans isomerase InterPro IPR000297~KEGG: cac:CA_C0279 peptidil-prolyl cis-trans isomerase~PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase~SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2505284339~PFAM: PPIC-type PPIASE domain gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1029 Thein_1030 Thein_1030 Thein_1030 1082769 1083398 + CoA-binding domain protein COGs: COG2344 AT-rich DNA-binding protein~InterPro IPR009718:IPR003781~KEGG: sfu:Sfum_1603 redox-sensing transcriptional repressor REX~PFAM: CoA-binding domain protein%3B Rex DNA-binding domain protein~SPTR: Redox-sensing transcriptional repressor rex%3B~IMG reference gene:2505284340~PFAM: CoA binding domain%3B Putative DNA-binding protein N-terminus gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1030 Thein_1031 Thein_1031 Thein_1031 1083444 1084442 + GTP-binding protein Obg/CgtA COGs: COG0536 GTPase~InterProIPR006074:IPR006073:IPR006169:IPR002917:IPR 014100:IPR005225~KEGG: aae:aq_2069 GTPase ObgE~PFAM: GTP1/OBG sub domain protein%3B GTP-binding protein HSR1-related~SPTR: GTPase obg%3B~TIGRFAM: GTP-binding protein Obg/CgtA%3B small GTP-binding protein~IMG reference gene:2505284341~PFAM: GTPase of unknown function%3B GTP1/OBG~TIGRFAM: Obg family GTPase CgtA%3B small GTP-binding protein domain gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1031 Thein_1032 Thein_1032 Thein_1032 1084418 1085563 + glutamate 5-kinase COGs: COG0263 Glutamate 5-kinase~InterProIPR019797:IPR002478:IPR001057:IPR001048:IPR 011529:IPR005715~KEGG: dak:DaAHT2_1156 glutamate 5-kinase~PFAM: aspartate/glutamate/uridylate kinase%3B PUA domain containing protein~SMART: PUA domain containing protein~SPTR: Glutamate 5-kinase%3B~TIGRFAM: glutamate 5-kinase~IMG reference gene:2505284342~PFAM: PUA domain%3B Amino acid kinase family~TIGRFAM: glutamate 5-kinase gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1032 Thein_1033 Thein_1033 Thein_1033 1085576 1086772 + Radical SAM domain protein COGs: COG1060 Thiamine biosynthesis protein ThiH~InterPro IPR006638:IPR007197:IPR005244:IPR020050~KEGG: dak:DaAHT2_0567 radical SAM domain protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284343~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM domain protein%2C CofH subfamily%3B menaquinone biosynthesis protein%2C SCO4550 family gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1033 Thein_1034 Thein_1034 Thein_1034 1086782 1087993 + amidohydrolase COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase~InterPro IPR006680~KEGG: dak:DaAHT2_0568 amidohydrolase~PFAM: amidohydrolase~SPTR: Amidohydrolase%3B~IMG reference gene:2505284344~PFAM: Amidohydrolase family gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1034 Thein_1035 Thein_1035 Thein_1035 1088056 1088772 + hypothetical protein KEGG: dvl:Dvul_2509 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284345 gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1035 Thein_1036 Thein_1036 Thein_1036 1088744 1089697 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: fpl:Ferp_1052 PfkB domain protein~PFAM: PfkB domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284346~PFAM: pfkB family carbohydrate kinase gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1036 Thein_1037 Thein_1037 Thein_1037 1089684 1091066 + peptidase U62 modulator of DNA gyrase COGs: COG0312 Zn-dependent protease and their inactivated homologs~InterPro IPR002510~KEGG: tye:THEYE_A0931 protein TldD~PFAM: peptidase U62 modulator of DNA gyrase~SPTR: Protein TldD%3B~IMG reference gene:2505284347~PFAM: Putative modulator of DNA gyrase gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1037 Thein_1038 Thein_1038 Thein_1038 1091083 1092456 + amidophosphoribosyltransferase COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase~InterProIPR018087:IPR000583:IPR000836:IPR005854:IPR 017932~KEGG: dak:DaAHT2_1636 amidophosphoribosyltransferase~PFAM: glutamine amidotransferase class-II%3B phosphoribosyltransferase~SPTR: Amidophosphoribosyltransferase%3B~TIGRFAM: amidophosphoribosyltransferase~IMG reference gene:2505284348~PFAM: Phosphoribosyl transferase domain%3B Glutamine amidotransferases class-II~TIGRFAM: amidophosphoribosyltransferase gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1038 Thein_1039 Thein_1039 Thein_1039 1092460 1093941 + UbiD family decarboxylase COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase~InterPro IPR002830~KEGG: dma:DMR_21400 3-octaprenyl-4-hydroxybenzoate carboxy-lyase~PFAM: Carboxylyase-related protein~SPTR: UbiD family decarboxylase%3B~TIGRFAM: UbiD family decarboxylase~IMG reference gene:2505284349~PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase~TIGRFAM: menaquinone biosynthesis decarboxylase%2C SCO4490 family%3B UbiD family decarboxylases gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1039 Thein_1040 Thein_1040 Thein_1040 1094032 1095882 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR017900:IPR004089:IPR017896~KEGG: clj:CLJU_c20370 putative transcriptional regulator~PFAM: chemotaxis sensory transducer~SMART: chemotaxis sensory transducer~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284350~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B 4Fe-4S binding domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1040 Thein_1041 Thein_1041 Thein_1041 1096516 1097802 - FolC bifunctional protein COGs: COG0285 Folylpolyglutamate synthase~InterPro IPR018109:IPR013221:IPR004101:IPR001645~KEGG: dal:Dalk_0204 FolC bifunctional protein~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~PRIAM: Tetrahydrofolate synthase~SPTR: FolC bifunctional protein%3B~TIGRFAM: FolC bifunctional protein~IMG reference gene:2505284351~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase middle domain~TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1041 Thein_1042 Thein_1042 Thein_1042 1097847 1099460 - SSS sodium solute transporter superfamily COGs: COG4147 symporter~InterPro IPR001734:IPR019900~KEGG: dau:Daud_0272 SSS family solute/sodium (Na+) symporter~PFAM: Na+/solute symporter~SPTR: SSS sodium solute transporter superfamily%3B~TIGRFAM: SSS sodium solute transporter superfamily~IMG reference gene:2505284352~PFAM: Sodium:solute symporter family~TIGRFAM: transporter%2C SSS family gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1042 Thein_1043 Thein_1043 Thein_1043 1099460 1100179 - UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006015:IPR006016~KEGG: dau:Daud_0271 UspA domain-containing protein~PFAM: UspA domain-containing protein~SPTR: UspA domain protein%3B~IMG reference gene:2505284353~PFAM: Universal stress protein family gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1043 Thein_1044 Thein_1044 Thein_1044 1100532 1102208 - cell wall hydrolase/autolysin COGs: COG0860 N-acetylmuramoyl-L-alanine amidase~InterPro IPR002508~KEGG: ddf:DEFDS_0015 N-acetylmuramoyl-L-alanine amidase~PFAM: cell wall hydrolase/autolysin~SMART: cell wall hydrolase/autolysin~SPTR: N-acetylmuramoyl-L-alanine amidase%3B~IMG reference gene:2505284354~PFAM: N-acetylmuramoyl-L-alanine amidase%3B Localisation of periplasmic protein complexes gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1044 Thein_1045 Thein_1045 Thein_1045 1102208 1104781 - DNA mismatch repair protein MutS COGs: COG0249 Mismatch repair ATPase (MutS family)~InterProIPR000432:IPR007696:IPR005748:IPR007695:IPR 007860:IPR007861~KEGG: gsu:GSU1822 DNA mismatch repair protein MutS~PFAM: MutS III domain protein%3B DNA mismatch repair protein MutS domain protein%3B MutS II domain protein%3B MutS IV domain protein~SMART: MutS III domain protein%3B DNA mismatch repair protein MutS domain protein~SPTR: DNA mismatch repair protein MutS%3B~TIGRFAM: DNA mismatch repair protein MutS~IMG reference gene:2505284355~PFAM: MutS family domain IV%3B MutS domain II%3B MutS domain V%3B MutS domain I%3B MutS domain III~TIGRFAM: DNA mismatch repair protein MutS gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1045 Thein_1046 Thein_1046 Thein_1046 1105094 1105777 - phage SPO1 DNA polymerase-related protein COGs: COG1573 Uracil-DNA glycosylase~InterPro IPR005122:IPR005273~KEGG: rpf:Rpic12D_1308 phage SPO1 DNA polymerase-related protein~PFAM: Uracil-DNA glycosylase superfamily~SPTR: Putative uncharacterized protein%3B~TIGRFAM: phage SPO1 DNA polymerase-related protein~IMG reference gene:2505284356~PFAM: Uracil DNA glycosylase superfamily~TIGRFAM: uracil-DNA glycosylase family domain%3B uracil-DNA glycosylase%2C family 4 gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1046 Thein_1047 Thein_1047 Thein_1047 1105828 1107426 - transcriptional regulator%2C NifA subfamily%2C Fis Family COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains~InterProIPR002078:IPR003018:IPR003593:IPR020441:IPR 002197~KEGG: sfu:Sfum_1010 NifA subfamily transcriptional regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B GAF domain protein%3B helix-turn-helix Fis-type~SMART: GAF domain protein%3B AAA ATPase~SPTR: Transcriptional regulator%2C NifA subfamily%2C Fis Family%3B~IMG reference gene:2505284357~PFAM: GAF domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain~TIGRFAM: Nif-specific regulatory protein gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1047 Thein_1048 Thein_1048 Thein_1048 1107419 1108594 - pyruvate carboxyltransferase COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR002034:IPR000891~KEGG: dsa:Desal_0448 pyruvate carboxyltransferase~PFAM: pyruvate carboxyltransferase~SPTR: Pyruvate carboxyltransferase%3B~IMG reference gene:2505284358~PFAM: HMGL-like gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1048 Thein_1049 Thein_1049 Thein_1049 1108848 1109675 + nitrogenase iron protein COGs: COG1348 Nitrogenase subunit NifH (ATPase)~InterPro IPR000392:IPR005977~KEGG: slp:Slip_2130 nitrogenase iron protein~PFAM: NifH/frxC-family protein~PRIAM: Nitrogenase~SPTR: Nitrogenase iron protein%3B~TIGRFAM: nitrogenase iron protein~IMG reference gene:2505284359~PFAM: 4Fe-4S iron sulfur cluster binding proteins%2C NifH/frxC family~TIGRFAM: nitrogenase iron protein gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1049 Thein_1050 Thein_1050 Thein_1050 1109701 1110018 + nitrogen regulatory protein P-II COGs: COG0347 Nitrogen regulatory protein PII~InterPro IPR017918:IPR002187~KEGG: mfs:MFS40622_0032 nitrogen regulatory protein P-II~PFAM: nitrogen regulatory protein P-II~SPTR: Nitrogen regulatory protein P-II%3B~IMG reference gene:2505284360~PFAM: Nitrogen regulatory protein P-II gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1050 Thein_1051 Thein_1051 Thein_1051 1110036 1110416 + nitrogen regulatory protein P-II COGs: COG0347 Nitrogen regulatory protein PII~InterPro IPR017918:IPR002187~KEGG: mba:Mbar_A2279 P-II family nitrogen regulatory protein~PFAM: nitrogen regulatory protein P-II~SPTR: Nitrogen regulatory protein P-II%3B~IMG reference gene:2505284361~PFAM: Nitrogen regulatory protein P-II gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1051 Thein_1052 Thein_1052 Thein_1052 1110427 1111257 + Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR007197~KEGG: rci:RCIX325 hypothetical protein~PFAM: Radical SAM domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284362~PFAM: Radical SAM superfamily~TIGRFAM: nitrogenase cofactor biosynthesis protein NifB gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1052 Thein_1053 Thein_1053 Thein_1053 1111278 1112708 + nitrogenase component I%2C alpha chain COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains~InterPro IPR000318:IPR000510:IPR005974:IPR010143~KEGG: dau:Daud_0146 nitrogenase component I%2C alpha chain~PFAM: oxidoreductase/nitrogenase component 1~SPTR: Nitrogenase protein alpha chain%3B~TIGRFAM: nitrogenase component I%2C alpha chain%3B nitrogenase alpha chain~manually curated~selenocysteine-containing protein~IMG reference gene:2505284363~PFAM: Nitrogenase component 1 type Oxidoreductase~TIGRFAM: nitrogenase component I%2C alpha chain%3B nitrogenase alpha chain gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1053 Thein_1054 Thein_1054 Thein_1054 1112724 1114193 + Nitrogenase COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains~InterPro IPR000318:IPR000510~KEGG: dau:Daud_0147 nitrogenase~PFAM: oxidoreductase/nitrogenase component 1~PRIAM: Nitrogenase~SPTR: Nitrogenase%3B~IMG reference gene:2505284364~PFAM: Nitrogenase component 1 type Oxidoreductase gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1054 Thein_1055 Thein_1055 Thein_1055 1114236 1114682 + cyanate lyase COGs: COG1513 Cyanate lyase~InterPro IPR008076:IPR003712~KEGG: syw:SYNW2490 cyanate hydratase~PFAM: Cyanate lyase domain protein~PRIAM: Cyanase~SPTR: Cyanate hydratase%3B~TIGRFAM: cyanate lyase~IMG reference gene:2505284365~PFAM: Cyanate lyase C-terminal domain~TIGRFAM: cyanate hydratase gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1055 Thein_1056 Thein_1056 Thein_1056 1114699 1115973 + oxidoreductase/nitrogenase component 1 COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains~InterPro IPR000318:IPR000510~KEGG: mfs:MFS40622_0041 oxidoreductase/nitrogenase component 1~PFAM: oxidoreductase/nitrogenase component 1~SPTR: Oxidoreductase/nitrogenase component 1%3B~IMG reference gene:2505284366~PFAM: Nitrogenase component 1 type Oxidoreductase gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1056 Thein_1057 Thein_1057 Thein_1057 1116392 1116739 + protein of unknown function CGGC region COGs: COG5561 metal-binding protein~InterPro IPR014925~KEGG: dat:HRM2_49320 hypothetical protein~PFAM: protein of unknown function CGGC region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284367~PFAM: CGGC domain gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1057 Thein_1058 Thein_1058 Thein_1058 1116742 1117524 + exodeoxyribonuclease III COGs: COG0708 Exonuclease III~InterPro IPR005135:IPR000097:IPR004808~KEGG: gvi:glr0140 exodeoxyribonuclease III~PFAM: Endonuclease/exonuclease/phosphatase~PRIAM: Exodeoxyribonuclease III~SPTR: Exodeoxyribonuclease III%3B~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III Xth~IMG reference gene:2505284368~PFAM: Endonuclease/Exonuclease/phosphatase family~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III (xth) gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1058 Thein_1059 Thein_1059 Thein_1059 1117521 1118552 + peptidase M42 family protein COGs: COG1363 Cellulase M and related protein~InterPro IPR008007~KEGG: pho:PH1527 Frv operon protein FrvX~PFAM: peptidase M42 family protein~SPTR: Tetrahedral aminopeptidase%3B~IMG reference gene:2505284369~PFAM: M42 glutamyl aminopeptidase gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1059 Thein_1060 Thein_1060 Thein_1060 1118518 1119519 + hypothetical protein KEGG: dau:Daud_1123 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284370 gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1060 Thein_1061 Thein_1061 Thein_1061 1119488 1120585 - PAS/PAC sensor signal transduction histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR000014:IPR003661:IPR003594:IPR004358:IPR 013767:IPR005467~KEGG: sfu:Sfum_2495 signal transduction histidine kinase%2C nitrogen specific%2C NtrB~PFAM: ATP-binding region ATPase domain protein%3B PAS fold domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B PAS domain containing protein%3B histidine kinase A domain protein~SPTR: PAS/PAC sensor signal transduction histidine kinase%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284371~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1061 Thein_1062 Thein_1062 Thein_1062 1120586 1121566 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG0492 Thioredoxin reductase~InterPro IPR000103:IPR013027:IPR001327~KEGG: tye:THEYE_A0446 oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: Oxidoreductase%3B~IMG reference gene:2505284372~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1062 Thein_1063 Thein_1063 Thein_1063 1121601 1122053 - UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006015:IPR006016~KEGG: dma:DMR_17860 putative universal stress protein~PFAM: UspA domain-containing protein~SPTR: UspA%3B~IMG reference gene:2505284373~PFAM: Universal stress protein family gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1063 Thein_1064 Thein_1064 Thein_1064 1122147 1123007 + PHP domain protein COGs: COG0613 metal-dependent phosphoesterase (PHP family)~InterPro IPR003141:IPR004013~KEGG: chy:CHY_2227 phosphotransferase domain-containing protein~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein~SPTR: PHP domain protein%3B~IMG reference gene:2505284374~PFAM: PHP domain gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1064 Thein_1065 Thein_1065 Thein_1065 1122991 1123731 - pseudouridine synthase COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterPro IPR018496:IPR002942:IPR006145:IPR000748~KEGG: adg:Adeg_1292 pseudouridine synthase~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: Pseudouridine synthase%3B~IMG reference gene:2505284375~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1065 Thein_1066 Thein_1066 Thein_1066 1123737 1124669 - riboflavin biosynthesis protein RibF COGs: COG0196 FAD synthase~InterPro IPR015864:IPR015865:IPR002606~KEGG: dak:DaAHT2_1659 riboflavin biosynthesis protein RibF~PFAM: FAD synthetase%3B Riboflavin kinase~SPTR: Riboflavin kinase / FAD synthetase%3B~TIGRFAM: riboflavin biosynthesis protein RibF~IMG reference gene:2505284376~PFAM: Riboflavin kinase%3B FAD synthetase~TIGRFAM: riboflavin kinase/FMN adenylyltransferase gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1066 Thein_1067 Thein_1067 Thein_1067 1124673 1125323 - hypothetical protein KEGG: sfu:Sfum_0344 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284377~PFAM: Domain of unknown function (DUF2760) gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1067 Thein_1068 Thein_1068 Thein_1068 1125320 1126444 - carbamoyl-phosphate synthase%2C small subunit COGs: COG0505 Carbamoylphosphate synthase small subunit~InterProIPR001317:IPR011702:IPR006220:IPR002474:IPR 000991:IPR006274:IPR017926~KEGG: dak:DaAHT2_0900 carbamoyl-phosphate synthase%2C small subunit~PFAM: Carbamoyl-phosphate synthase small chain%3B glutamine amidotransferase class-I~SPTR: Carbamoyl-phosphate synthase%2C small subunit%3B~TIGRFAM: carbamoyl-phosphate synthase%2C small subunit~IMG reference gene:2505284378~PFAM: Carbamoyl-phosphate synthase small chain%2C CPSase domain%3B Glutamine amidotransferase class-I~TIGRFAM: carbamoyl-phosphate synthase%2C small subunit gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1068 Thein_1069 Thein_1069 Thein_1069 1126613 1126900 + hypothetical protein KEGG: lbf:LBF_1866 signal transduction protein~SPTR: Transcription termination factor Rho%3B~IMG reference gene:2505284379 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1069 Thein_1070 Thein_1070 Thein_1070 1126897 1128039 - thymidylate kinase COGs: COG0125 Thymidylate kinase~InterProIPR018095:IPR003593:IPR018094:IPR004948:IPR 000062~KEGG: apo:Arcpr_0346 thymidylate kinase~PFAM: thymidylate kinase%3B protein of unknown function DUF265~PRIAM: Nucleoside-triphosphatase.%2C dTMP kinase~SMART: AAA ATPase~SPTR: Probable thymidylate kinase%3B~TIGRFAM: thymidylate kinase~IMG reference gene:2505284380~PFAM: Protein of unknown function%2C DUF265%3B Thymidylate kinase~TIGRFAM: thymidylate kinase gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1070 Thein_1071 Thein_1071 Thein_1071 1128051 1128680 - Smr protein/MutS2 COGs: COG2840 conserved hypothetical protein~InterPro IPR002625~KEGG: dal:Dalk_1036 Smr protein/MutS2~PFAM: Smr protein/MutS2~SMART: Smr protein/MutS2~SPTR: Smr protein/MutS2%3B~IMG reference gene:2505284381~PFAM: Smr domain gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1071 Thein_1072 Thein_1072 Thein_1072 1128754 1130622 - PAS/PAC sensor hybrid histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR000014:IPR003594:IPR001789:IPR004358:IPR 013767:IPR005467~KEGG: ddf:DEFDS_0784 hypothetical protein~PFAM: ATP-binding region ATPase domain protein%3B PAS fold domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B PAS domain containing protein%3B response regulator receiver~SPTR: Putative uncharacterized protein%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284382~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1072 Thein_1073 Thein_1073 Thein_1073 1130669 1131706 - deoxyguanosinetriphosphate triphosphohydrolase COGs: COG0232 dGTP triphosphohydrolase~InterPro IPR003607:IPR006674:IPR006261~KEGG: dps:DP1797 deoxyguanosinetriphosphate triphosphohydrolase-like protein~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Related to deoxyguanosinetriphosphate triphosphohydrolase%3B~TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase~IMG reference gene:2505284383~PFAM: HD domain~TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase%2C putative gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1073 Thein_1074 Thein_1074 Thein_1074 1131711 1132766 - S-adenosylmethionine/tRNA-ribosyltransferase-isomerase COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)~InterPro IPR003699~KEGG: aae:aq_894 S-adenosylmethionine:tRNA ribosyltransferase-isomerase~PFAM: Queuosine biosynthesis protein~SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase%3B~TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase~IMG reference gene:2505284384~PFAM: Queuosine biosynthesis protein~TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1074 Thein_1075 Thein_1075 Thein_1075 1132763 1135498 - (Glutamate--ammonia-ligase) adenylyltransferase COGs: COG1391 Glutamine synthetase adenylyltransferase~InterPro IPR005190:IPR013546~KEGG: gme:Gmet_0071 glutamate-ammonia ligase adenylyltransferase~PFAM: GlnD PII-uridylyltransferase%3B glutamate-ammonia ligase adenylyltransferase~PRIAM: [Glutamate--ammonia-ligase] adenylyltransferase~SPTR: Glutamate-ammonia ligase adenylyltransferase%3B~IMG reference gene:2505284385~PFAM: GlnD PII-uridylyltransferase%3B Glutamate-ammonia ligase adenylyltransferase gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1075 Thein_1076 Thein_1076 Thein_1076 1135488 1136321 - cytochrome c-type biogenesis protein CcsB COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component~InterPro IPR003557:IPR002541:IPR017562~KEGG: sfu:Sfum_0695 cytochrome c assembly protein~PFAM: cytochrome c assembly protein~SPTR: Probable cytochrome c biogenesis protein (CcsA)%3B~TIGRFAM: cytochrome c-type biogenesis protein CcsB~IMG reference gene:2505284386~PFAM: Cytochrome C assembly protein~TIGRFAM: cytochrome c-type biogenesis protein CcsB gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1076 Thein_1077 Thein_1077 Thein_1077 1136384 1138684 + response regulator receiver sensor hybrid histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR020053:IPR001789:IPR003661:IPR003594:IPR 004358:IPR005467~KEGG: cts:Ctha_2310 PAS/PAC sensor hybrid histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B response regulator receiver%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B response regulator receiver%3B histidine kinase A domain protein~SPTR: Putative Histidine kinase%3B~IMG reference gene:2505284387~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1077 Thein_1078 Thein_1078 Thein_1078 1138696 1139277 + nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415~KEGG: hmo:HM1_3019 nitroreductase family protein~PFAM: nitroreductase~SPTR: Nitroreductase family protein%3B~IMG reference gene:2505284388~PFAM: Nitroreductase family gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1078 Thein_1079 Thein_1079 Thein_1079 1139304 1140179 + inner-membrane translocator COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components~InterPro IPR001851~KEGG: dvm:DvMF_1483 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2505284389~PFAM: Branched-chain amino acid transport system / permease component gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1079 Thein_1080 Thein_1080 Thein_1080 1140176 1141117 + inner-membrane translocator COGs: COG4177 ABC-type branched-chain amino acid transport system permease component~InterPro IPR001851~KEGG: sfu:Sfum_0384 ABC transporter related~PFAM: inner-membrane translocator~SPTR: ABC transporter related%3B~IMG reference gene:2505284390~PFAM: Branched-chain amino acid transport system / permease component gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1080 Thein_1081 Thein_1081 Thein_1081 1141219 1142502 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: ank:AnaeK_1445 glycosyl transferase group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2505284391~PFAM: Glycosyl transferases group 1 gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1081 Thein_1082 Thein_1082 Thein_1082 1142505 1143326 + polysaccharide deacetylase COGs: COG0726 xylanase/chitin deacetylase~InterPro IPR002509~KEGG: bts:Btus_0502 polysaccharide deacetylase~PFAM: polysaccharide deacetylase~SPTR: Polysaccharide deacetylase%3B~IMG reference gene:2505284392~PFAM: Polysaccharide deacetylase gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1082 Thein_1083 Thein_1083 Thein_1083 1143316 1144236 + hypothetical protein InterPro IPR005242~KEGG: geo:Geob_3377 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284393~PFAM: Uncharacterised protein family (UPF0104)~TIGRFAM: conserved hypothetical protein gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1083 Thein_1084 Thein_1084 Thein_1084 1144423 1145013 + selenium metabolism protein YedF InterPro IPR001455:IPR019870~KEGG: drm:Dred_1242 SirA family protein~PFAM: SirA-like domain-containing protein~SPTR: Transcriptional regulator%3B~TIGRFAM: selenium metabolism protein YedF~IMG reference gene:2505284394~PFAM: DsrE/DsrF-like family%3B SirA-like protein~TIGRFAM: selenium metabolism protein YedF gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1084 Thein_1085 Thein_1085 Thein_1085 1145010 1146152 + cysteine desulfurase family protein COGs: COG0520 Selenocysteine lyase~InterPro IPR020578:IPR000192:IPR010969~KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase~PFAM: aminotransferase class V~SPTR: Cysteine desulfurase / selenocysteine lyase%3B~TIGRFAM: cysteine desulfurase family protein~IMG reference gene:2505284395~PFAM: Aminotransferase class-V~TIGRFAM: cysteine desulfurase family protein gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1085 Thein_1086 Thein_1086 Thein_1086 1146149 1146394 + hypothetical protein KEGG: gsu:GSU0640 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284396~PFAM: Protein of unknown function (DUF3343) gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1086 Thein_1088 Thein_1088 Thein_1088 1147302 1149011 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG0446 NAD(FAD)-dependent dehydrogenase~InterPro IPR002355:IPR001763:IPR013027:IPR004099~KEGG: dps:DP2890 NADH oxidase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region~SMART: Rhodanese domain protein~SPTR: Related to NADH oxidase%3B~IMG reference gene:2505284398~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Rhodanese-like domain%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1088 Thein_1089 Thein_1089 Thein_1089 1149149 1149622 + hypothetical protein KEGG: tye:THEYE_A0926 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284399~PFAM: Protein of unknown function (DUF2934) gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1089 Thein_1090 Thein_1090 Thein_1090 1149947 1153441 + molybdopterin dinucleotide-binding region COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing~InterPro IPR006963:IPR006656:IPR006657:IPR017896~KEGG: dma:DMR_26720 molybdopterin oxidoreductase~PFAM: molydopterin dinucleotide-binding region%3B molybdopterin oxidoreductase Fe4S4 region%3B molybdopterin oxidoreductase~SPTR: Molybdopterin oxidoreductase%3B~IMG reference gene:2505284400~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain%3B Molybdopterin oxidoreductase Fe4S4 domain gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1090 Thein_1091 Thein_1091 Thein_1091 1153464 1154390 + transglutaminase domain-containing protein COGs: COG1305 Transglutaminase-like protein~InterPro IPR002931~KEGG: aba:Acid345_2396 transglutaminase-like~PFAM: transglutaminase domain-containing protein~SMART: transglutaminase domain-containing protein~SPTR: Transglutaminase-like%3B~IMG reference gene:2505284401~PFAM: Transglutaminase-like superfamily gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1091 Thein_1092 Thein_1092 Thein_1092 1154615 1156705 - metallophosphoesterase InterPro IPR004843:IPR004365~KEGG: mif:Metin_0769 metallophosphoesterase~PFAM: metallophosphoesterase%3B nucleic acid binding OB-fold tRNA/helicase-type~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284402~PFAM: Calcineurin-like phosphoesterase gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1092 Thein_1093 Thein_1093 Thein_1093 1156979 1157740 - PP-loop domain protein COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~InterPro IPR011063:IPR012089~KEGG: dal:Dalk_1237 PP-loop domain protein~PFAM: PP-loop domain protein~SPTR: PP-loop domain protein%3B~IMG reference gene:2505284403~PFAM: PP-loop family gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1093 Thein_1094 Thein_1094 Thein_1094 1158073 1160049 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: nca:Noca_2984 chemotaxis sensory transducer~PFAM: chemotaxis sensory transducer~SMART: chemotaxis sensory transducer~SPTR: Chemotaxis sensory transducer%3B~IMG reference gene:2505284404~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1094 Thein_1095 Thein_1095 Thein_1095 1160063 1161196 - Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR000709:IPR001828~KEGG: sit:TM1040_3178 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2505284405~PFAM: Receptor family ligand binding region gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1095 Thein_1096 Thein_1096 Thein_1096 1161348 1162145 - bifunctional GlmU protein COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)~InterPro IPR001451~KEGG: dps:DP2923 bifunctional GlmU protein~SPTR: Probable bifunctional GlmU protein%3B~IMG reference gene:2505284406 gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1096 Thein_1097 Thein_1097 Thein_1097 1162142 1163026 - putative circadian clock protein%2C KaiC COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction~InterPro IPR014774:IPR010624~KEGG: aae:aq_204 hypothetical protein~PFAM: Circadian clock protein KaiC central region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284407~PFAM: KaiC~TIGRFAM: KaiC domain protein%2C AF_0795 family gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1097 Thein_1098 Thein_1098 Thein_1098 1163026 1164300 - Nucleotidyl transferase COGs: COG0448 ADP-glucose pyrophosphorylase~InterPro IPR005836:IPR018103:IPR005835~KEGG: dak:DaAHT2_1367 nucleotidyl transferase~PFAM: Nucleotidyl transferase~SPTR: Glucose-1-phosphate adenylyltransferase%3B~IMG reference gene:2505284408~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate adenylyltransferase gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1098 Thein_1099 Thein_1099 Thein_1099 1164546 1165220 - hypothetical protein COGs: COG2930 conserved hypothetical protein~KEGG: dps:DP2816 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284409~PFAM: Family of unknown function (DUF500) gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1099 Thein_1100 Thein_1100 Thein_1100 1165248 1165949 + metal-dependent hydrolase of the beta-lactamase superfamily COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II~KEGG: nam:NAMH_1777 metal-dependent hydrolase of the beta-lactamase superfamily~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284410~PFAM: Metallo-beta-lactamase superfamily gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1100 Thein_1101 Thein_1101 Thein_1101 1166421 1167575 + Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828~KEGG: dsa:Desal_1121 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2505284411~PFAM: Receptor family ligand binding region gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1101 Thein_1102 Thein_1102 Thein_1102 1167541 1169724 + signal transduction histidine kinase%2C nitrogen specific%2C NtrB COGs: COG3852 Signal transduction histidine kinase nitrogen specific~InterProIPR003661:IPR003594:IPR001789:IPR004358:IPR 000014:IPR005467~KEGG: ddf:DEFDS_0784 hypothetical protein~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B response regulator receiver~SPTR: Putative uncharacterized protein%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284412~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain~TIGRFAM: PAS domain S-box gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1102 Thein_1103 Thein_1103 Thein_1103 1169797 1170294 + hypothetical protein KEGG: bmy:Bm1_07165 ATPase%2C AAA family protein~SPTR: ATPase%2C AAA family protein%3B~IMG reference gene:2505284413 gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1103 Thein_1104 Thein_1104 Thein_1104 1170319 1171623 - thiamine biosynthesis protein ThiC COGs: COG0422 Thiamine biosynthesis protein ThiC~InterPro IPR002817~KEGG: dak:DaAHT2_1551 thiamine biosynthesis protein ThiC~PFAM: thiamine biosynthesis protein ThiC~SPTR: Thiamine biosynthesis protein ThiC%3B~TIGRFAM: thiamine biosynthesis protein ThiC~IMG reference gene:2505284414~PFAM: ThiC family~TIGRFAM: thiamine biosynthesis protein ThiC gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1104 Thein_1105 Thein_1105 Thein_1105 1171793 1172704 + ornithine carbamoyltransferase COGs: COG0078 Ornithine carbamoyltransferase~InterPro IPR006130:IPR002292:IPR006132:IPR006131~KEGG: dak:DaAHT2_2211 ornithine carbamoyltransferase~PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region%3B aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain~SPTR: Ornithine carbamoyltransferase%3B~TIGRFAM: ornithine carbamoyltransferase~IMG reference gene:2505284415~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain~TIGRFAM: ornithine carbamoyltransferase gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1105 Thein_1106 Thein_1106 Thein_1106 1172714 1175527 + hypothetical protein COGs: COG3893 Inactivated superfamily I helicase~KEGG: dsa:Desal_2713 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284416 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1106 Thein_1107 Thein_1107 Thein_1107 1175651 1176511 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284417 gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1107 Thein_1108 Thein_1108 Thein_1108 1176626 1177726 + DNA repair photolyase-like protein COGs: COG1533 DNA repair photolyase~KEGG: dal:Dalk_0910 DNA repair photolyase-like protein~SPTR: DNA repair photolyase-like protein%3B~IMG reference gene:2505284418 gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1108 Thein_1109 Thein_1109 Thein_1109 1177714 1179057 + hypothetical protein InterPro IPR011031~KEGG: sse:Ssed_4024 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284419 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1109 Thein_1110 Thein_1110 Thein_1110 1179023 1180210 + RNA methylase COGs: COG1092 SAM-dependent methyltransferase~InterPro IPR000241:IPR002478~KEGG: chy:CHY_1437 hypothetical protein~PFAM: RNA methylase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284420~PFAM: S-adenosylmethionine-dependent methyltransferase gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1110 Thein_1111 Thein_1111 Thein_1111 1180188 1181927 + PHP domain protein COGs: COG1796 DNA polymerase IV (family X)~InterProIPR002054:IPR003583:IPR003141:IPR002008:IPR 004013~KEGG: adg:Adeg_1792 DNA-directed DNA polymerase~PFAM: PHP domain protein~SMART: DNA polymerase X%3B Helix-hairpin-helix DNA-binding class 1%3B phosphoesterase PHP domain protein~SPTR: DNA-directed DNA polymerase%3B~IMG reference gene:2505284421~PFAM: PHP domain gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1111 Thein_1112 Thein_1112 Thein_1112 1181903 1182742 + eight transmembrane protein EpsH InterPro IPR019127:IPR013426~KEGG: dde:Dde_0847 hypothetical protein~PFAM: Exosortase EpsH-related~SPTR: Membrane protein%2C putative%3B~TIGRFAM: eight transmembrane protein EpsH~IMG reference gene:2505284422~PFAM: Transmembrane exosortase (Exosortase_EpsH)~TIGRFAM: eight transmembrane protein EpsH (proposed exosortase) gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1112 Thein_1113 Thein_1113 Thein_1113 1182739 1183356 + EpsI family protein InterPro IPR014263~KEGG: sus:Acid_6339 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: EpsI family protein~IMG reference gene:2505284423~PFAM: Protein of unknown function (DUF3485)~TIGRFAM: EpsI family protein gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1113 Thein_1114 Thein_1114 Thein_1114 1183353 1183904 - DJ-1 family protein COGs: COG0693 Putative intracellular protease/amidase~InterPro IPR002818:IPR006287~KEGG: tal:Thal_0984 DJ-1 family protein~PFAM: ThiJ/PfpI domain-containing protein~SPTR: DJ-1 family protein%3B~TIGRFAM: DJ-1 family protein~IMG reference gene:2505284424~PFAM: DJ-1/PfpI family~TIGRFAM: DJ-1 family protein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1114 Thein_1115 Thein_1115 Thein_1115 1184452 1185810 - nicotinate phosphoribosyltransferase COGs: COG1488 Nicotinic acid phosphoribosyltransferase~InterPro IPR015977:IPR007229:IPR006405~KEGG: sfu:Sfum_2602 nicotinate phosphoribosyltransferase~PFAM: Nicotinate phosphoribosyltransferase-like~SPTR: Nicotinate phosphoribosyltransferase%3B~TIGRFAM: nicotinate phosphoribosyltransferase~IMG reference gene:2505284426~PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family~TIGRFAM: putative nicotinate phosphoribosyltransferase gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1115 Thein_1116 Thein_1116 Thein_1116 1185807 1186328 - isochorismatase hydrolase COGs: COG1335 Amidase related to nicotinamidase~InterPro IPR000868~KEGG: sfu:Sfum_2603 isochorismatase hydrolase~PFAM: isochorismatase hydrolase~SPTR: Isochorismatase hydrolase%3B~IMG reference gene:2505284427~PFAM: Isochorismatase family gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1116 Thein_1117 Thein_1117 Thein_1117 1186670 1187815 + metal dependent phosphohydrolase COGs: COG1639 signal transduction protein~InterPro IPR003607:IPR013976:IPR006675~KEGG: dal:Dalk_3991 metal dependent phosphohydrolase~PFAM: Metal-dependent hydrolase HDOD~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal dependent phosphohydrolase%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505284428~PFAM: HDOD domain~TIGRFAM: uncharacterized domain HDIG gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1117 Thein_1118 Thein_1118 Thein_1118 1187890 1188831 + transposase IS4 family protein COGs: COG3039 Transposase and inactivated derivatives IS5 family~InterPro IPR002559~KEGG: cyn:Cyan7425_5319 transposase IS4 family protein~PFAM: transposase IS4 family protein~SPTR: Transposase%3B~IMG reference gene:2505284429~PFAM: Transposase DDE domain%3B Transposase domain (DUF772) gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1118 Thein_1119 Thein_1119 Thein_1119 1189243 1189659 + hypothetical protein KEGG: cth:Cthe_0307 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284430 gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1119 Thein_1120 Thein_1120 Thein_1120 1189660 1190025 + hypothetical protein KEGG: afw:Anae109_4344 hypothetical protein~SPTR: Predicted protein%3B~IMG reference gene:2505284431~PFAM: Protein of unknown function (DUF2752) gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1120 Thein_1121 Thein_1121 Thein_1121 1190009 1190782 - Indole-3-glycerol-phosphate synthase COGs: COG0134 Indole-3-glycerol phosphate synthase~InterPro IPR001468:IPR013798~KEGG: dak:DaAHT2_0450 indole-3-glycerol-phosphate synthase~PFAM: Indole-3-glycerol phosphate synthase~PRIAM: Indole-3-glycerol-phosphate synthase~SPTR: Indole-3-glycerol-phosphate synthase%3B~manually curated~IMG reference gene:2505284432~PFAM: Indole-3-glycerol phosphate synthase gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1121 Thein_1122 Thein_1122 Thein_1122 1190864 1191901 + hypothetical protein InterPro IPR000834:IPR003961~KEGG: dps:DP0434 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284433 gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1122 Thein_1123 Thein_1123 Thein_1123 1191901 1193169 + diaminopimelate decarboxylase COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR000183:IPR002986~KEGG: dma:DMR_21290 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2~SPTR: Diaminopimelate decarboxylase%3B~TIGRFAM: diaminopimelate decarboxylase~IMG reference gene:2505284434~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain~TIGRFAM: diaminopimelate decarboxylase gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1123 Thein_1124 Thein_1124 Thein_1124 1193189 1194052 + diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase~InterPro IPR018510:IPR001653~KEGG: sfu:Sfum_0057 diaminopimelate epimerase~PFAM: diaminopimelate epimerase~SPTR: Diaminopimelate epimerase%3B~TIGRFAM: diaminopimelate epimerase~IMG reference gene:2505284435~PFAM: Diaminopimelate epimerase~TIGRFAM: diaminopimelate epimerase gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1124 Thein_1125 Thein_1125 Thein_1125 1194069 1194998 + dihydrodipicolinate synthase COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase~InterPro IPR020624:IPR020625:IPR002220:IPR005263~KEGG: gbm:Gbem_4054 dihydrodipicolinate synthase~PFAM: dihydrodipicolinate synthetase~SPTR: Dihydrodipicolinate synthase%3B~TIGRFAM: dihydrodipicolinate synthase~IMG reference gene:2505284436~PFAM: Dihydrodipicolinate synthetase family~TIGRFAM: dihydrodipicolinate synthase gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1125 Thein_1126 Thein_1126 Thein_1126 1195011 1195814 + dihydrodipicolinate reductase COGs: COG0289 Dihydrodipicolinate reductase~InterPro IPR000846:IPR011770~KEGG: dak:DaAHT2_2218 dihydrodipicolinate reductase~PFAM: dihydrodipicolinate reductase~PRIAM: Dihydrodipicolinate reductase~SPTR: Dihydrodipicolinate reductase%3B~TIGRFAM: dihydrodipicolinate reductase~IMG reference gene:2505284437~PFAM: Dihydrodipicolinate reductase%2C N-terminus%3B Dihydrodipicolinate reductase%2C C-terminus~TIGRFAM: dihydrodipicolinate reductase gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1126 Thein_1127 Thein_1127 Thein_1127 1196110 1197051 - transposase IS4 family protein COGs: COG3039 Transposase and inactivated derivatives IS5 family~InterPro IPR002559~KEGG: cyn:Cyan7425_5319 transposase IS4 family protein~PFAM: transposase IS4 family protein~SPTR: Transposase%3B~IMG reference gene:2505284438~PFAM: Transposase DDE domain%3B Transposase domain (DUF772) gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1127 Thein_1128 Thein_1128 Thein_1128 1197104 1198047 - pseudogene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1128 Thein_1129 Thein_1129 Thein_1129 1198110 1198346 - hypothetical protein KEGG: llm:llmg_1806 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284440 gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1129 Thein_1130 Thein_1130 Thein_1130 1198343 1199686 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR002078:IPR001789:IPR003593:IPR020441:IPR 002197~KEGG: dal:Dalk_0340 two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505284441~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1130 Thein_1131 Thein_1131 Thein_1131 1199679 1200620 - histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterPro IPR003661:IPR003594:IPR004358:IPR005467~KEGG: dma:DMR_02390 two-component sensor histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Cell cycle histidine kinase CckA%3B~IMG reference gene:2505284442~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1131 Thein_1132 Thein_1132 Thein_1132 1200664 1201917 + MscS Mechanosensitive ion channel COGs: COG0668 Small-conductance mechanosensitive channel~InterPro IPR000792:IPR006685~KEGG: dol:Dole_1640 MscS mechanosensitive ion channel~PFAM: MscS Mechanosensitive ion channel~SPTR: MscS Mechanosensitive ion channel%3B~IMG reference gene:2505284443~PFAM: Mechanosensitive ion channel gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1132 Thein_1133 Thein_1133 Thein_1133 1201926 1203287 + Na+/H+ antiporter NhaA COGs: COG3004 Na+/H+ antiporter~InterPro IPR004670~KEGG: tdn:Suden_1784 Na+/H+ antiporter NhaA~PFAM: Na+/H+ antiporter NhaA~SPTR: Na+/H+ antiporter NhaA%3B~TIGRFAM: Na+/H+ antiporter NhaA~IMG reference gene:2505284444~PFAM: Na+/H+ antiporter 1~TIGRFAM: Na+/H+ antiporter NhaA gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1133 Thein_1134 Thein_1134 Thein_1134 1203361 1203648 + hypothetical protein KEGG: lpa:lpa_02799 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284445~PFAM: Archaeal ATPase gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1134 Thein_1135 Thein_1135 Thein_1135 1203677 1204330 - HhH-GPD family protein COGs: COG2231 Uncharacterized protein related to Endonuclease III~InterPro IPR003265:IPR003651~KEGG: hor:Hore_02160 HhH-GPD family protein~PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop~SMART: HhH-GPD family protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284446~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Iron-sulfur binding domain of endonuclease III gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1135 Thein_1136 Thein_1136 Thein_1136 1204632 1205942 + amidohydrolase COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase~InterPro IPR006680~KEGG: dal:Dalk_5014 amidohydrolase~PFAM: amidohydrolase~SPTR: Amidohydrolase%3B~IMG reference gene:2505284447~PFAM: Amidohydrolase family gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1136 Thein_1137 Thein_1137 Thein_1137 1205992 1207695 - urease%2C alpha subunit COGs: COG0804 Urea amidohydrolase (urease) alpha subunit~InterProIPR017950:IPR005848:IPR017952:IPR011612:IPR 006680:IPR017951~KEGG: tjr:TherJR_0607 urease%2C alpha subunit~PFAM: amidohydrolase%3B Urease alpha-subunit domain-containing protein~PRIAM: Urease~SPTR: Urease subunit alpha%3B~TIGRFAM: urease%2C alpha subunit~IMG reference gene:2505284448~PFAM: Urease alpha-subunit%2C N-terminal domain%3B Amidohydrolase family~TIGRFAM: urease%2C alpha subunit gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1137 Thein_1138 Thein_1138 Thein_1138 1207697 1208065 - urease%2C beta subunit COGs: COG0832 Urea amidohydrolase (urease) beta subunit~InterPro IPR002019~KEGG: ant:Arnit_1070 urease subunit gamma~PFAM: Urease beta subunit~PRIAM: Urease~SPTR: Urease%2C gamma subunit%3B~TIGRFAM: urease%2C beta subunit~IMG reference gene:2505284449~PFAM: Urease beta subunit~TIGRFAM: urease%2C beta subunit gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1138 Thein_1139 Thein_1139 Thein_1139 1208076 1208378 - urease%2C gamma subunit COGs: COG0831 Urea amidohydrolase (urease) gamma subunit~InterPro IPR012010:IPR002026~KEGG: tjr:TherJR_0605 urease%2C gamma subunit~PFAM: Urease gamma subunit region~PRIAM: Urease~SPTR: Urease subunit gamma%3B~TIGRFAM: urease%2C gamma subunit~IMG reference gene:2505284450~PFAM: Urease%2C gamma subunit~TIGRFAM: urease%2C gamma subunit gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1139 Thein_1140 Thein_1140 Thein_1140 1208514 1210274 + transcriptional regulator%2C NifA subfamily%2C Fis Family COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains~InterProIPR002078:IPR003018:IPR003593:IPR020441:IPR 002197~KEGG: aae:aq_218 NifA family transcriptional regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B helix-turn-helix Fis-type~SMART: AAA ATPase%3B GAF domain protein~SPTR: Transcriptional regulator (NifA family)%3B~IMG reference gene:2505284451~PFAM: Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1140 Thein_1141 Thein_1141 Thein_1141 1211035 1212303 + urea ABC transporter%2C urea binding protein COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828:IPR006311:IPR017777:IPR017909~KEGG: csc:Csac_2475 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~TIGRFAM: urea ABC transporter%2C urea binding protein~IMG reference gene:2505284452~PFAM: Receptor family ligand binding region~TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence%3B urea ABC transporter%2C urea binding protein gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1141 Thein_1142 Thein_1142 Thein_1142 1212377 1213279 + urea ABC transporter%2C permease protein UrtB COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components~InterPro IPR001851:IPR017779~KEGG: abo:ABO_1984 branched-chain amino acid ABC transporter%2Cpermease protein~PFAM: inner-membrane translocator~SPTR: Branched-chain amino acid ABC transporter%2Cpermease protein%3B~TIGRFAM: urea ABC transporter%2C permease protein UrtB~IMG reference gene:2505284453~PFAM: Branched-chain amino acid transport system / permease component~TIGRFAM: urea ABC transporter%2C permease protein UrtB gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1142 Thein_1143 Thein_1143 Thein_1143 1213281 1214372 + urea ABC transporter%2C permease protein UrtC COGs: COG4177 ABC-type branched-chain amino acid transport system permease component~InterPro IPR001851:IPR017778~KEGG: cth:Cthe_1821 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: Inner-membrane translocator%3B~TIGRFAM: urea ABC transporter%2C permease protein UrtC~IMG reference gene:2505284454~PFAM: Branched-chain amino acid transport system / permease component~TIGRFAM: urea ABC transporter%2C permease protein UrtC gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1143 Thein_1144 Thein_1144 Thein_1144 1214356 1215123 + urea ABC transporter%2C ATP-binding protein UrtD COGs: COG4674 Uncharacterized ABC-type transport system ATPase component~InterPro IPR003439:IPR017781~KEGG: sde:Sde_2972 response regulator receiver domain-containing protein~PFAM: ABC transporter related~SPTR: ABC transporter related%3B~TIGRFAM: urea ABC transporter%2C ATP-binding protein UrtD~IMG reference gene:2505284455~PFAM: ABC transporter%3B Branched-chain amino acid ATP-binding cassette transporter~TIGRFAM: urea ABC transporter%2C ATP-binding protein UrtD gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1144 Thein_1145 Thein_1145 Thein_1145 1215110 1215799 + urea ABC transporter%2C ATP-binding protein UrtE COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003593:IPR003439:IPR017780~KEGG: vap:Vapar_3141 UreA ABC transporter%2C ATP-binding protein UrtE~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Urea ABC transporter%2C ATP-binding protein UrtE%3B~TIGRFAM: urea ABC transporter%2C ATP-binding protein UrtE~IMG reference gene:2505284456~PFAM: ABC transporter~TIGRFAM: urea ABC transporter%2C ATP-binding protein UrtE gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1145 Thein_1146 Thein_1146 Thein_1146 1215958 1216188 + pseudogene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1146 Thein_1147 Thein_1147 Thein_1147 1216192 1216671 - Conserved hypothetical protein CHP00730 COGs: COG1611 Rossmann fold nucleotide-binding protein~InterPro IPR005269:IPR005268~KEGG: cyn:Cyan7425_0411 hypothetical protein~PFAM: Conserved hypothetical protein CHP00730~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284458~PFAM: Possible lysine decarboxylase~TIGRFAM: TIGR00725 family protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1147 Thein_1148 Thein_1148 Thein_1148 1216655 1217314 - protein-L-isoaspartate O-methyltransferase COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase~InterPro IPR000682~KEGG: sfu:Sfum_2480 protein-L-isoaspartate O-methyltransferase~PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase~PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase~SPTR: Protein-L-isoaspartate O-methyltransferase 1%3B~TIGRFAM: protein-L-isoaspartate O-methyltransferase~IMG reference gene:2505284459~PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)~TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1148 Thein_1149 Thein_1149 Thein_1149 1217317 1217655 - hypothetical protein KEGG: pct:PC1_1608 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284460~PFAM: SmpA / OmlA family gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1149 Thein_1150 Thein_1150 Thein_1150 1217708 1218307 + hypothetical protein KEGG: pfh:PFHG_05453 predicted protein~SPTR: Antigen 332%2C DBL-like protein%3B~IMG reference gene:2505284461 gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1150 Thein_1151 Thein_1151 Thein_1151 1218298 1219038 - outer membrane assembly lipoprotein YfiO COGs: COG4105 DNA uptake lipoprotein~InterPro IPR017689:IPR013026~KEGG: dal:Dalk_2404 outer membrane assembly lipoprotein YfiO~SPTR: Outer membrane assembly lipoprotein YfiO%3B~TIGRFAM: outer membrane assembly lipoprotein YfiO~IMG reference gene:2505284462~TIGRFAM: outer membrane assembly lipoprotein YfiO gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1151 Thein_1152 Thein_1152 Thein_1152 1219035 1219958 - thioredoxin reductase COGs: COG0492 Thioredoxin reductase~InterPro IPR008255:IPR000103:IPR013027:IPR005982~KEGG: tte:TTE2220 thioredoxin reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: Thioredoxin reductase%3B~TIGRFAM: thioredoxin reductase~IMG reference gene:2505284463~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: thioredoxin-disulfide reductase gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1152 Thein_1153 Thein_1153 Thein_1153 1219964 1220287 - thioredoxin COGs: COG3118 Thioredoxin domain-containing protein~InterProIPR017937:IPR006662:IPR013766:IPR005746:IPR 017936~KEGG: dsa:Desal_1817 thioredoxin~PFAM: Thioredoxin domain-containing protein~SPTR: Thioredoxin%3B~TIGRFAM: thioredoxin~IMG reference gene:2505284464~PFAM: Thioredoxin~TIGRFAM: thioredoxin gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1153 Thein_1154 Thein_1154 Thein_1154 1220723 1223117 + pseudogene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1154 Thein_1155 Thein_1155 Thein_1155 1223291 1223746 + hypothetical protein KEGG: dak:DaAHT2_0556 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284466 gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1155 Thein_1156 Thein_1156 Thein_1156 1223730 1224935 + phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase~InterPro IPR003382:IPR007085:IPR005252~KEGG: dau:Daud_1595 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase~PFAM: DNA/pantothenate metabolism flavoprotein domain protein%3B flavoprotein~PRIAM: Phosphopantothenate--cysteine ligase~SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase%3B~TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~IMG reference gene:2505284467~PFAM: DNA / pantothenate metabolism flavoprotein%3B Flavoprotein~TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase%2C prokaryotic gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1156 Thein_1157 Thein_1157 Thein_1157 1224969 1226048 + peptidase M24 COGs: COG0006 Xaa-Pro aminopeptidase~InterPro IPR001131:IPR000587:IPR000994~KEGG: dak:DaAHT2_1915 peptidase M24~PFAM: peptidase M24%3B creatinase~SPTR: Peptidase M24%3B~IMG reference gene:2505284468~PFAM: Metallopeptidase family M24%3B Creatinase/Prolidase N-terminal domain gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1157 Thein_1158 Thein_1158 Thein_1158 1226045 1226935 - lipopolysaccharide biosynthesis protein InterPro IPR003856~KEGG: pmx:PERMA_0007 chain length determinant protein~PFAM: lipopolysaccharide biosynthesis protein~SPTR: Chain length determinant protein%3B~IMG reference gene:2505284469~PFAM: Chain length determinant protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1158 Thein_1159 Thein_1159 Thein_1159 1227190 1227777 - ribosomal RNA methyltransferase RrmJ/FtsJ COGs: COG0293 23S rRNA methylase~InterPro IPR002877:IPR016448~KEGG: dba:Dbac_3489 ribosomal RNA methyltransferase RrmJ/FtsJ~PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ~SPTR: Ribosomal RNA methyltransferase RrmJ/FtsJ%3B~IMG reference gene:2505284470~PFAM: FtsJ-like methyltransferase~TIGRFAM: cell division protein FtsJ gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1159 Thein_1160 Thein_1160 Thein_1160 1227863 1228615 + ABC transporter related protein COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: ddf:DEFDS_0657 branched-chain amino acid ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Branched-chain amino acid ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2505284471~PFAM: ABC transporter%3B Branched-chain amino acid ATP-binding cassette transporter gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1160 Thein_1161 Thein_1161 Thein_1161 1228600 1230150 - methylenetetrahydrofolate reductase COGs: COG0685 5 10-methylenetetrahydrofolate reductase~InterPro IPR003171~KEGG: tjr:TherJR_2661 methylenetetrahydrofolate reductase~PFAM: methylenetetrahydrofolate reductase~SPTR: Methylenetetrahydrofolate reductase%3B~IMG reference gene:2505284472~PFAM: Methylene-tetrahydrofolate reductase C terminal%3B Methylenetetrahydrofolate reductase gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1161 Thein_1162 Thein_1162 Thein_1162 1230151 1231512 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR002078:IPR001789:IPR003593:IPR020441:IPR 002197~KEGG: sfu:Sfum_1934 two component%2C sigma54 specific%2C fis family transcriptional regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505284473~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1162 Thein_1163 Thein_1163 Thein_1163 1231509 1233686 - multi-sensor signal transduction histidine kinase COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation~InterProIPR003660:IPR000014:IPR003661:IPR003594:IPR 004358:IPR013767:IPR017232:IPR005467~KEGG: geo:Geob_2314 PAS/PAC sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B PAS fold domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B PAS domain containing protein%3B histidine kinase A domain protein~SPTR: PAS/PAC sensor signal transduction histidine kinase%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284474~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1163 Thein_1164 Thein_1164 Thein_1164 1233692 1234243 - hypothetical protein KEGG: dat:HRM2_11180 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284475 gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1164 Thein_1165 Thein_1165 Thein_1165 1234246 1234773 - nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415~KEGG: dak:DaAHT2_0557 nitroreductase~PFAM: nitroreductase~SPTR: Nitroreductase%3B~IMG reference gene:2505284476~PFAM: Nitroreductase family gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1165 Thein_1166 Thein_1166 Thein_1166 1234760 1235449 - NADPH-dependent FMN reductase COGs: COG0655 Multimeric flavodoxin WrbA~InterPro IPR005025~KEGG: iho:Igni_0620 NADPH-dependent FMN reductase~PFAM: NADPH-dependent FMN reductase~SPTR: NADPH-dependent FMN reductase%3B~IMG reference gene:2505284477~PFAM: NADPH-dependent FMN reductase gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1166 Thein_1167 Thein_1167 Thein_1167 1235450 1236343 - Spermine synthase COGs: COG0421 Spermidine synthase~InterPro IPR001045~KEGG: pla:Plav_0583 spermidine synthase~PFAM: Spermine synthase~SPTR: Spermidine synthase%3B~IMG reference gene:2505284478~PFAM: Spermine/spermidine synthase~TIGRFAM: spermidine synthase gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1167 Thein_1168 Thein_1168 Thein_1168 1236819 1238177 + sulfate adenylyltransferase COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase)~InterPro IPR002650~KEGG: adg:Adeg_1712 sulfate adenylyltransferase~PFAM: ATP-sulfurylase~PRIAM: Sulfate adenylyltransferase~SPTR: Sulfate adenylyltransferase%3B~TIGRFAM: sulfate adenylyltransferase~IMG reference gene:2505284479~PFAM: ATP-sulfurylase~TIGRFAM: ATP sulphurylase gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1168 Thein_1169 Thein_1169 Thein_1169 1238208 1238564 + hypothetical protein KEGG: pas:Pars_1241 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284480 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1169 Thein_1170 Thein_1170 Thein_1170 1238604 1239758 + Uncharacterized conserved protein UCP016719 COGs: COG3876 conserved hypothetical protein~InterPro IPR008302~KEGG: dak:DaAHT2_0978 hypothetical protein~PFAM: Uncharacterised conserved protein UCP016719~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284481~PFAM: Protein of unknown function (DUF1343) gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1170 Thein_1171 Thein_1171 Thein_1171 1239751 1240797 + phosphoesterase RecJ domain protein COGs: COG0618 Exopolyphosphatase-related protein~InterPro IPR001667~KEGG: dak:DaAHT2_1369 phosphoesterase RecJ domain protein~PFAM: phosphoesterase RecJ domain protein~SPTR: Phosphoesterase%2C RecJ-like:Phosphoesterase%2C DHHA1%3B~IMG reference gene:2505284482~PFAM: DHH family gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1171 Thein_1172 Thein_1172 Thein_1172 1240814 1241173 + regulatory protein%2C FmdB family InterPro IPR013429~KEGG: sfu:Sfum_1903 FmdB family regulatory protein~PFAM: Putative regulatory protein FmdB~SPTR: Putative regulatory protein%2C FmdB family%3B~TIGRFAM: regulatory protein%2C FmdB family~IMG reference gene:2505284483~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1172 Thein_1173 Thein_1173 Thein_1173 1241163 1242407 + Nucleotidyl transferase COGs: COG0448 ADP-glucose pyrophosphorylase~InterPro IPR005836:IPR005835~KEGG: dak:DaAHT2_1368 nucleotidyl transferase~PFAM: Nucleotidyl transferase~SPTR: Nucleotidyl transferase%3B~IMG reference gene:2505284484~PFAM: Nucleotidyl transferase gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1173 Thein_1174 Thein_1174 Thein_1174 1242407 1242667 + Phosphotransferase system%2C phosphocarrier protein HPr COGs: COG1925 Phosphotransferase system HPr-related protein~InterPro IPR001020:IPR005698:IPR000032~KEGG: mta:Moth_0015 HPrNtr~PFAM: phosphoryl transfer system HPr~SPTR: HPrNtr%3B~TIGRFAM: phosphocarrier%2C HPr family~IMG reference gene:2505284485~PFAM: PTS HPr component phosphorylation site~TIGRFAM: Phosphotransferase System HPr (HPr) Family gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1174 Thein_1175 Thein_1175 Thein_1175 1242664 1244388 + phosphoenolpyruvate-protein phosphotransferase COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component)~InterPro IPR000121:IPR006318:IPR008731:IPR008279~KEGG: sfu:Sfum_0772 phosphoenolpyruvate-protein phosphotransferase~PFAM: PEP-utilizing protein%3B PEP-utilising protein domain protein%3B PEP-utilising protein mobile region~SPTR: Phosphoenolpyruvate--protein phosphotransferase%3B~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase~IMG reference gene:2505284486~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme%2C N-terminal~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1175 Thein_1176 Thein_1176 Thein_1176 1244432 1244728 + lipopolysaccharide biosynthesis protein InterPro IPR003856~KEGG: pmx:PERMA_0007 chain length determinant protein~PFAM: lipopolysaccharide biosynthesis protein~SPTR: Chain length determinant protein%3B~IMG reference gene:2505284487 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1176 Thein_1177 Thein_1177 Thein_1177 1244714 1246132 - hypothetical protein KEGG: gem:GM21_1506 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284488 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1177 Thein_1178 Thein_1178 Thein_1178 1246134 1247189 - Mammalian cell entry related domain protein COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component~InterPro IPR003399~KEGG: gsu:GSU1899 virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein~SPTR: Virulence factor Mce family protein%3B~IMG reference gene:2505284489~PFAM: mce related protein~TIGRFAM: virulence factor Mce family protein gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1178 Thein_1179 Thein_1179 Thein_1179 1247176 1247934 - ABC transporter related protein COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component~InterPro IPR017871:IPR003593:IPR003439~KEGG: sat:SYN_00410 ABC-type transport system%2C ATP-binding component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC-type transport system%2C ATP-binding component%3B~IMG reference gene:2505284490~PFAM: ABC transporter gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1179 Thein_1180 Thein_1180 Thein_1180 1247942 1248715 - protein of unknown function DUF140 COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component~InterPro IPR003453~KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents%2C permease component~PFAM: protein of unknown function DUF140~SPTR: ABC-type transport system involved in resistance to organic solvents%2C permease component%3B~IMG reference gene:2505284491~PFAM: Domain of unknown function DUF140~TIGRFAM: conserved hypothetical integral membrane protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1180 Thein_1181 Thein_1181 Thein_1181 1248890 1249288 + Protein-tyrosine phosphatase%2C low molecular weight COGs: COG0394 Protein-tyrosine-phosphatase~InterPro IPR017867~KEGG: adg:Adeg_1934 protein-tyrosine phosphatase%2C low molecular weight~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight~SPTR: Protein-tyrosine phosphatase%2C low molecular weight%3B~IMG reference gene:2505284492~PFAM: Low molecular weight phosphotyrosine protein phosphatase gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1181 Thein_1182 Thein_1182 Thein_1182 1249278 1250426 - Radical SAM domain protein COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif~InterPro IPR006638:IPR003583:IPR007197:IPR000445~KEGG: dth:DICTH_1688 radical SAM~PFAM: Radical SAM domain protein%3B helix-hairpin-helix motif~SMART: Helix-hairpin-helix DNA-binding class 1%3B Elongator protein 3/MiaB/NifB~SPTR: Radical SAM%3B~IMG reference gene:2505284493~PFAM: Radical SAM superfamily%3B Helix-hairpin-helix motif gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1182 Thein_1183 Thein_1183 Thein_1183 1250464 1251567 - hypothetical protein KEGG: nam:NAMH_0673 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284494 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1183 Thein_1184 Thein_1184 Thein_1184 1251650 1252195 - phosphoesterase PA-phosphatase related protein InterPro IPR000326~KEGG: hth:HTH_0940 phosphoesterase%2C PA-phosphatase related~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related~SPTR: Phosphoesterase%2C PA-phosphatase related%3B~IMG reference gene:2505284495~PFAM: PAP2 superfamily gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1184 Thein_1185 Thein_1185 Thein_1185 1252644 1253534 - NERD domain protein InterPro IPR011528~KEGG: dba:Dbac_0218 NERD domain protein~PFAM: NERD domain protein~SPTR: NERD domain protein%3B~IMG reference gene:2505284496~PFAM: Nuclease-related domain gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1185 Thein_1186 Thein_1186 Thein_1186 1254002 1254307 - hypothetical protein KEGG: bba:Bd3656 MFS permease~SPTR: MFS permease%3B~IMG reference gene:2505284498 gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1186 Thein_1187 Thein_1187 Thein_1187 1254297 1254767 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: bid:Bind_1082 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: GCN5-related N-acetyltransferase%3B~IMG reference gene:2505284499~PFAM: Acetyltransferase (GNAT) family gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1187 Thein_1188 Thein_1188 Thein_1188 1254996 1255691 + beta-lactamase COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold~KEGG: aba:Acid345_3437 beta-lactamase-like~SPTR: UPF0173 metal-dependent hydrolase Acid345_3437%3B~IMG reference gene:2505284500~PFAM: Metallo-beta-lactamase superfamily gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1188 Thein_1189 Thein_1189 Thein_1189 1255691 1256350 + molybdopterin-guanine dinucleotide biosynthesis protein B COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein~KEGG: dps:DP1766 molybdopterin-guanine dinucleotide biosynthesis protein B~SPTR: Related to molybdopterin-guanine dinucleotide biosynthesis protein B%3B~IMG reference gene:2505284501~PFAM: Molybdopterin guanine dinucleotide synthesis protein B~TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1189 Thein_1190 Thein_1190 Thein_1190 1256318 1257313 - thymidylate synthase complementing protein ThyX COGs: COG1351 alternative thymidylate synthase~InterPro IPR003669~KEGG: hya:HY04AAS1_0508 thymidylate synthase complementing protein ThyX~PFAM: thymidylate synthase complementing protein ThyX~SPTR: Thymidylate synthase complementing protein ThyX%3B~IMG reference gene:2505284502~PFAM: Thymidylate synthase complementing protein~TIGRFAM: thymidylate synthase%2C flavin-dependent gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1190 Thein_1191 Thein_1191 Thein_1191 1257310 1257753 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut COGs: COG0756 dUTPase~InterPro IPR008180:IPR008181~KEGG: drm:Dred_0491 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut~PFAM: deoxyUTP pyrophosphatase~SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut%3B~TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut~IMG reference gene:2505284503~PFAM: dUTPase~TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1191 Thein_1192 Thein_1192 Thein_1192 1257750 1259468 - protein of unknown function DUF505 COGs: COG1542 conserved hypothetical protein~InterPro IPR007548~KEGG: trq:TRQ2_1791 hypothetical protein~PFAM: protein of unknown function DUF505~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284504~PFAM: Protein of unknown function (DUF505) gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1192 Thein_1193 Thein_1193 Thein_1193 1259527 1260804 - PHP domain protein COGs: COG1379 conserved hypothetical protein~InterPro IPR004013~KEGG: dtu:Dtur_1268 PHP domain protein~PFAM: PHP domain protein~SPTR: PHP domain protein%3B~IMG reference gene:2505284505~TIGRFAM: TIGR00375 family protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1193 Thein_1194 Thein_1194 Thein_1194 1261088 1263634 - PAS/PAC sensor hybrid histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR004358:IPR013656:IPR013767:IPR005467:IPR000700~KEGG: ppd:Ppro_0904 PAS/PAC sensor hybrid histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B PAS fold domain protein%3B PAS fold-4 domain protein%3B histidine kinase A domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B PAS domain containing protein%3B PAC repeat-containing protein%3B histidine kinase A domain protein%3B response regulator receiver~SPTR: PAS/PAC sensor hybrid histidine kinase%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284506~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1194 Thein_1195 Thein_1195 Thein_1195 1263958 1264623 + methyltransferase GidB COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division~InterPro IPR003682~KEGG: dat:HRM2_24880 GidB~PFAM: glucose inhibited division protein~SPTR: Ribosomal RNA small subunit methyltransferase G%3B~TIGRFAM: methyltransferase GidB~IMG reference gene:2505284507~PFAM: rRNA small subunit methyltransferase G~TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1195 Thein_1196 Thein_1196 Thein_1196 1264595 1264801 - hypothetical protein KEGG: dol:Dole_1867 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2505284508 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1196 Thein_1197 Thein_1197 Thein_1197 1264841 1266841 + excinuclease ABC%2C B subunit COGs: COG0556 Helicase subunit of the DNA excision repair complex~InterProIPR014001:IPR001650:IPR004807:IPR006935:IPR 001943:IPR014021~KEGG: gme:Gmet_3219 excinuclease ABC subunit B~PFAM: helicase domain protein%3B type III restriction protein res subunit%3B UvrB/UvrC protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: UvrABC system protein B%3B~TIGRFAM: excinuclease ABC%2C B subunit~IMG reference gene:2505284509~PFAM: Helicase conserved C-terminal domain%3B UvrB/uvrC motif%3B Type III restriction enzyme%2C res subunit%3B Ultra-violet resistance protein B~TIGRFAM: excinuclease ABC%2C B subunit gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1197 Thein_1198 Thein_1198 Thein_1198 1266838 1267536 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR018483:IPR006224:IPR006145~KEGG: dtu:Dtur_0345 pseudouridine synthase~PFAM: pseudouridine synthase~SPTR: Pseudouridine synthase%3B~IMG reference gene:2505284510~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1198 Thein_1199 Thein_1199 Thein_1199 1267598 1267897 + hypothetical protein KEGG: tmt:Tmath_0891 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284511~PFAM: Protein of unknown function (DUF1049) gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1199 Thein_1200 Thein_1200 Thein_1200 1267894 1268685 + protein of unknown function UPF0153 InterPro IPR005358~KEGG: dal:Dalk_2850 protein of unknown function UPF0153~PFAM: protein of unknown function UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284512~PFAM: Uncharacterised protein family (UPF0153) gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1200 Thein_1201 Thein_1201 Thein_1201 1268682 1269314 + Phosphoglycerate mutase COGs: COG0406 Fructose-2 6-bisphosphatase~InterPro IPR013078~KEGG: gur:Gura_4185 phosphoglycerate mutase~PFAM: Phosphoglycerate mutase~SPTR: Phosphoglycerate mutase%3B~IMG reference gene:2505284513~PFAM: Phosphoglycerate mutase family gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1201 Thein_1202 Thein_1202 Thein_1202 1269364 1269849 + hypothetical protein KEGG: ade:Adeh_3903 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284514 gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1202 Thein_1203 Thein_1203 Thein_1203 1269904 1270938 + heat-inducible transcription repressor HrcA COGs: COG1420 Transcriptional regulator of heat shock gene~InterPro IPR002571:IPR021153~KEGG: gme:Gmet_3534 heat-inducible transcription repressor HrcA~PFAM: Winged helix-turn-helix transcription repressor%2C HrcA-like~SPTR: Heat-inducible transcription repressor hrcA%3B~TIGRFAM: heat-inducible transcription repressor HrcA~IMG reference gene:2505284515~PFAM: Domain of unknown function%3B HrcA protein C terminal domain~TIGRFAM: heat shock gene repressor HrcA gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1203 Thein_1204 Thein_1204 Thein_1204 1270980 1271627 + GrpE protein COGs: COG0576 Molecular chaperone GrpE (heat shock protein)~InterPro IPR000740~KEGG: dak:DaAHT2_0057 GrpE protein~PFAM: GrpE protein~SPTR: GrpE protein%3B~IMG reference gene:2505284516~PFAM: GrpE gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1204 Thein_1205 Thein_1205 Thein_1205 1271645 1273585 + chaperone protein DnaK COGs: COG0443 Molecular chaperone~InterPro IPR018181:IPR012725:IPR001023:IPR013126~KEGG: ddf:DEFDS_2114 molecular chaperone DnaK~PFAM: Heat shock protein 70~SPTR: Chaperone protein dnaK%3B~TIGRFAM: chaperone protein DnaK~IMG reference gene:2505284517~PFAM: Hsp70 protein~TIGRFAM: Fe-S protein assembly chaperone HscA%3B chaperone protein DnaK gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1205 Thein_1206 Thein_1206 Thein_1206 1273646 1274182 + methyltransferase COGs: COG0742 N6-adenine-specific methylase~InterPro IPR004398~KEGG: drm:Dred_2085 putative methyltransferase~PFAM: Conserved hypothetical protein CHP00095~SPTR: Putative uncharacterized protein%3B~TIGRFAM: methyltransferase~IMG reference gene:2505284518~PFAM: Conserved hypothetical protein 95~TIGRFAM: RNA methyltransferase%2C RsmD family gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1206 Thein_1207 Thein_1207 Thein_1207 1274182 1274685 + pantetheine-phosphate adenylyltransferase COGs: COG0669 Phosphopantetheine adenylyltransferase~InterPro IPR001980:IPR004820:IPR004821~KEGG: dak:DaAHT2_0546 pantetheine-phosphate adenylyltransferase~PFAM: cytidylyltransferase~PRIAM: Pantetheine-phosphate adenylyltransferase~SPTR: Pantetheine-phosphate adenylyltransferase%3B~TIGRFAM: pantetheine-phosphate adenylyltransferase%3B cytidyltransferase-related domain protein~IMG reference gene:2505284519~PFAM: Cytidylyltransferase~TIGRFAM: pantetheine-phosphate adenylyltransferase%2C bacterial%3B cytidyltransferase-related domain gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1207 Thein_1208 Thein_1208 Thein_1208 1274657 1275385 + hypothetical protein KEGG: dak:DaAHT2_0614 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284520~PFAM: Protein of unknown function (DUF3108) gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1208 Thein_1209 Thein_1209 Thein_1209 1275382 1275948 + class II aldolase/adducin family protein COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase~InterPro IPR001303~KEGG: tko:TK2132 L-fuculose phosphate aldolase~PFAM: class II aldolase/adducin family protein~SPTR: Fuculose-1-phosphate aldolase%3B~IMG reference gene:2505284521~PFAM: Class II Aldolase and Adducin N-terminal domain~TIGRFAM: L-ribulose-5-phosphate 4-epimerase gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1209 Thein_1210 Thein_1210 Thein_1210 1276097 1277425 - nucleotide sugar dehydrogenase COGs: COG1004 UDP-glucose 6-dehydrogenase~InterPro IPR001732:IPR014026:IPR014027:IPR017476~KEGG: ddf:DEFDS_0115 UDP-glucose 6-dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%3B UDP-glucose/GDP-mannose dehydrogenase dimerisation%3B UDP-glucose/GDP-mannose dehydrogenase~PRIAM: UDP-glucose 6-dehydrogenase~SPTR: UDP-glucose 6-dehydrogenase%3B~TIGRFAM: nucleotide sugar dehydrogenase~IMG reference gene:2505284523~PFAM: UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain%3B UDP-glucose/GDP-mannose dehydrogenase family%2C central domain%3B UDP-glucose/GDP-mannose dehydrogenase family%2C UDP binding domain~TIGRFAM: nucleotide sugar dehydrogenase gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1210 Thein_1211 Thein_1211 Thein_1211 1277435 1278088 - hypothetical protein KEGG: sat:SYN_00762 hypothetical protein~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2505284524 gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1211 Thein_1212 Thein_1212 Thein_1212 1278096 1278686 - Imidazoleglycerol-phosphate dehydratase COGs: COG0131 Imidazoleglycerol-phosphate dehydratase~InterPro IPR010916:IPR020565:IPR000807~KEGG: cbh:CLC_1599 imidazoleglycerol-phosphate dehydratase~PFAM: imidazoleglycerol-phosphate dehydratase~PRIAM: Imidazoleglycerol-phosphate dehydratase~SPTR: Imidazoleglycerol-phosphate dehydratase%3B~IMG reference gene:2505284525~PFAM: Imidazoleglycerol-phosphate dehydratase gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1212 Thein_1213 Thein_1213 Thein_1213 1278725 1279078 + hypothetical protein KEGG: tpr:Tpau_3474 crotonyl-CoA reductase~SPTR: Crotonyl-CoA reductase%3B~IMG reference gene:2505284526 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1213 Thein_1214 Thein_1214 Thein_1214 1279160 1280884 + phosphoribosylamine/glycine ligase COGs: COG0151 Phosphoribosylamine-glycine ligase~InterProIPR020559:IPR000115:IPR020562:IPR020561:IPR 020560:IPR000031:IPR011761~KEGG: dal:Dalk_2057 phosphoribosylamine/glycine ligase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C N-domain%3B Phosphoribosylglycinamide synthetase%2C C-domain%3B 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~PRIAM: Phosphoribosylamine--glycine ligase.%2C Phosphoribosylaminoimidazole carboxylase~SPTR: Phosphoribosylamine/glycine ligase%3B~TIGRFAM: phosphoribosylamine/glycine ligase~IMG reference gene:2505284527~PFAM: Phosphoribosylglycinamide synthetase%2C N domain%3B AIR carboxylase%3B Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C C domain~TIGRFAM: phosphoribosylamine--glycine ligase%3B phosphoribosylaminoimidazole carboxylase%2C PurE protein gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1214 Thein_1215 Thein_1215 Thein_1215 1280884 1281312 + protein of unknown function DUF6 transmembrane COGs: COG2510 membrane protein~InterPro IPR000620~KEGG: cce:Ccel_0424 protein of unknown function DUF6 transmembrane~PFAM: protein of unknown function DUF6 transmembrane~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284528~PFAM: EamA-like transporter family gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1215 Thein_1216 Thein_1216 Thein_1216 1281489 1282034 - hypothetical protein KEGG: dps:DP3093 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284529 gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1216 Thein_1217 Thein_1217 Thein_1217 1282046 1283005 - NAD-dependent epimerase/dehydratase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR008089:IPR001509~KEGG: ckr:CKR_1837 hypothetical protein~PFAM: NAD-dependent epimerase/dehydratase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284530~PFAM: NAD dependent epimerase/dehydratase family gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1217 Thein_1218 Thein_1218 Thein_1218 1283008 1284855 - glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains~InterPro IPR005855:IPR000583:IPR001347:IPR017932~KEGG: dak:DaAHT2_2371 glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: sugar isomerase (SIS)%3B glutamine amidotransferase class-II~SPTR: Glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing%3B~TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~IMG reference gene:2505284531~PFAM: SIS domain%3B Glutamine amidotransferases class-II~TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1218 Thein_1219 Thein_1219 Thein_1219 1284855 1286255 - sugar transferase%2C PEP-CTERM system associated COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis~InterPro IPR017475:IPR017464:IPR003362~KEGG: dat:HRM2_19690 CpsE~PFAM: sugar transferase~SPTR: CpsE%3B~TIGRFAM: sugar transferase%2C PEP-CTERM system associated%3B exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~IMG reference gene:2505284532~PFAM: Bacterial sugar transferase~TIGRFAM: sugar transferase%2C PEP-CTERM system associated%3B exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1219 Thein_1220 Thein_1220 Thein_1220 1286266 1287105 - putative exopolysaccharide biosynthesis protein (protein-tyrosine kinase) COGs: COG0489 ATPase involved in chromosome partitioning~KEGG: dat:HRM2_19680 putative exopolysaccharide biosynthesis protein (protein-tyrosine kinase)~SPTR: Putative exopolysaccharide biosynthesis protein (Protein-tyrosine kinase)%3B~IMG reference gene:2505284533 gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1220 Thein_1221 Thein_1221 Thein_1221 1287118 1288116 - AAA ATPase COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase)~InterPro IPR003593~KEGG: dak:DaAHT2_1740 AAA ATPase~SMART: AAA ATPase~SPTR: AAA ATPase%3B~IMG reference gene:2505284534~PFAM: Archaeal ATPase gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1221 Thein_1222 Thein_1222 Thein_1222 1288116 1289651 - polysaccharide chain length determinant protein%2C PEP-CTERM locus subfamily COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis~InterPro IPR014345:IPR003856~KEGG: dat:HRM2_19670 GumC1~PFAM: lipopolysaccharide biosynthesis protein~SPTR: GumC1%3B~TIGRFAM: polysaccharide chain length determinant protein%2C PEP-CTERM locus subfamily~IMG reference gene:2505284535~PFAM: Chain length determinant protein~TIGRFAM: polysaccharide chain length determinant protein%2C PEP-CTERM locus subfamily gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1222 Thein_1223 Thein_1223 Thein_1223 1289666 1290919 - hypothetical protein KEGG: dat:HRM2_19710 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284536~PFAM: Uncharacterized protein conserved in bacteria (DUF2320)~TIGRFAM: uncharacterized protein%2C PEP-CTERM system associated gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1223 Thein_1224 Thein_1224 Thein_1224 1290931 1291497 - polysaccharide export protein COGs: COG1596 Periplasmic protein involved in polysaccharide export~InterPro IPR003715:IPR019554~KEGG: dat:HRM2_19700 periplasmic polysaccharide export protein~PFAM: polysaccharide export protein%3B Soluble ligand binding domain~SPTR: Periplasmic polysaccharide export protein%3B~IMG reference gene:2505284537~PFAM: Polysaccharide biosynthesis/export protein%3B SLBB domain~TIGRFAM: putative polysaccharide export protein%2C PEP-CTERM sytem-associated gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1224 Thein_1225 Thein_1225 Thein_1225 1291487 1291813 - HNH endonuclease InterPro IPR003615:IPR002711~KEGG: ddf:DEFDS_1462 HNH endonuclease~PFAM: HNH endonuclease~SMART: HNH nuclease~SPTR: HNH endonuclease%3B~IMG reference gene:2505284538~PFAM: HNH endonuclease gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1225 Thein_1226 Thein_1226 Thein_1226 1291836 1292918 + Radical SAM domain protein COGs: COG1060 Thiamine biosynthesis protein ThiH~InterPro IPR020050:IPR006638:IPR007197:IPR005244~KEGG: chy:CHY_1806 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505284539~PFAM: Radical SAM superfamily~TIGRFAM: putative menaquinone biosynthesis protein%2C SCO4494 family%3B radical SAM domain protein%2C CofH subfamily gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1226 Thein_1227 Thein_1227 Thein_1227 1292915 1295338 - DNA gyrase%2C A subunit COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterPro IPR005743:IPR002205:IPR006691~KEGG: gbm:Gbem_0005 DNA gyrase%2C A subunit~PFAM: DNA gyrase/topoisomerase IV subunit A%3B DNA gyrase repeat beta-propeller~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA gyrase/topoisomerase IV subunit A~SPTR: DNA gyrase%2C A subunit%3B~TIGRFAM: DNA gyrase%2C A subunit~IMG reference gene:2505284540~PFAM: DNA gyrase/topoisomerase IV%2C subunit A%3B DNA gyrase C-terminal domain%2C beta-propeller~TIGRFAM: DNA gyrase%2C A subunit gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1227 Thein_1228 Thein_1228 Thein_1228 1295520 1296176 - hydroxyacylglutathione hydrolase COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: dak:DaAHT2_0323 hydroxyacylglutathione hydrolase~SPTR: Beta-lactamase-like%3B~IMG reference gene:2505284541~PFAM: Metallo-beta-lactamase superfamily gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1228 Thein_1229 Thein_1229 Thein_1229 1296166 1297083 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG0492 Thioredoxin reductase~InterPro IPR013027:IPR000103~KEGG: dak:DaAHT2_0308 FAD-dependent pyridine nucleotide-disulfide oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: Thioredoxin-disulfide reductase%3B~IMG reference gene:2505284542~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1229 Thein_1230 Thein_1230 Thein_1230 1297086 1297271 - protein of unknown function DUF329 COGs: COG3024 conserved hypothetical protein~InterPro IPR005584~KEGG: geo:Geob_2922 protein of unknown function DUF329~PFAM: protein of unknown function DUF329~SPTR: UPF0243 zinc-binding protein Geob_2922%3B~IMG reference gene:2505284543~PFAM: Domain of unknown function (DUF329) gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1230 Thein_1231 Thein_1231 Thein_1231 1297268 1298197 - UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006016~KEGG: dol:Dole_1866 UspA domain-containing protein~PFAM: UspA domain-containing protein~SPTR: UspA domain protein%3B~IMG reference gene:2505284544~PFAM: Universal stress protein family gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1231 Thein_1232 Thein_1232 Thein_1232 1298280 1298876 - recombination protein RecR COGs: COG0353 Recombinational DNA repair protein (RecF pathway)~InterPro IPR000093:IPR006154:IPR015967:IPR006171~KEGG: dak:DaAHT2_1246 recombination protein RecR~PFAM: TOPRIM domain-containing protein%3B Zinc finger C4-type%2C RecR~SMART: Toprim sub domain-containing protein~SPTR: RecR protein:TOPRIM%3B~TIGRFAM: recombination protein RecR~IMG reference gene:2505284545~PFAM: Toprim domain%3B RecR protein~TIGRFAM: recombination protein RecR gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1232 Thein_1233 Thein_1233 Thein_1233 1298878 1299189 - Uncharacterized protein family UPF0133 COGs: COG0718 conserved hypothetical protein~InterPro IPR004401~KEGG: tjr:TherJR_0069 hypothetical protein~PFAM: Uncharacterised protein family UPF0133~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284546~PFAM: Uncharacterised BCR%2C YbaB family COG0718~TIGRFAM: DNA-binding protein%2C YbaB/EbfC family gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1233 Thein_1234 Thein_1234 Thein_1234 1299194 1300726 - DNA polymerase III%2C subunits gamma and tau COGs: COG2812 DNA polymerase III gamma/tau subunits~InterPro IPR012763:IPR003593:IPR003959~KEGG: gme:Gmet_3422 DNA polymerase III%2C subunits gamma and tau~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase~SPTR: DNA polymerase III%2C subunits gamma and tau%3B~TIGRFAM: DNA polymerase III%2C subunits gamma and tau~IMG reference gene:2505284547~PFAM: ATPase family associated with various cellular activities (AAA)%3B DNA polymerase III subunits gamma and tau domain III~TIGRFAM: DNA polymerase III%2C subunit gamma and tau gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1234 Thein_1235 Thein_1235 Thein_1235 1300802 1301122 - branched-chain amino acid transport InterPro IPR008407~KEGG: mja:MJ1155.1 hypothetical protein~PFAM: branched-chain amino acid transport~SPTR: Uncharacterized protein MJ1155.1%3B~IMG reference gene:2505284548~PFAM: Branched-chain amino acid transport protein (AzlD) gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1235 Thein_1236 Thein_1236 Thein_1236 1301107 1301823 - AzlC family protein COGs: COG1296 branched-chain amino acid permease (azaleucine resistance)~InterPro IPR011606~KEGG: ttj:TTHA0235 hypothetical protein~PFAM: AzlC family protein~SPTR: Transporter%3B~IMG reference gene:2505284549~PFAM: AzlC protein~TIGRFAM: 4-azaleucine resistance probable transporter AzlC gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1236 Thein_1237 Thein_1237 Thein_1237 1301816 1302364 - helix-turn-helix domain protein InterPro IPR001387:IPR013096~KEGG: amc:MADE_03313 transcriptional regulator%2C Cro/CI family protein~PFAM: helix-turn-helix domain protein%3B Cupin 2 conserved barrel domain protein~SMART: helix-turn-helix domain protein~SPTR: Transcriptional regulator%2C Cro/CI family protein%3B~IMG reference gene:2505284550~PFAM: Helix-turn-helix gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1237 Thein_1238 Thein_1238 Thein_1238 1302492 1303187 + anaerobic ribonucleoside-triphosphate reductase activating protein COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR012840:IPR007197:IPR001989~KEGG: hth:HTH_1738 pyruvate formate-lyase activating enzyme~PFAM: Radical SAM domain protein~SPTR: Pyruvate formate-lyase activating enzyme%3B~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein~IMG reference gene:2505284551~PFAM: Radical SAM superfamily~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1238 Thein_1239 Thein_1239 Thein_1239 1303159 1303998 + peptidase M48 Ste24p COGs: COG4783 Putative Zn-dependent protease contains TPR repeats~InterPro IPR001915~KEGG: wsu:WS1322 hypothetical protein~PFAM: peptidase M48 Ste24p~SPTR: Peptidase M48%2C Ste24p%3B~IMG reference gene:2505284552~PFAM: Peptidase family M48 gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1239 Thein_1240 Thein_1240 Thein_1240 1304047 1305375 + signal recognition particle protein COGs: COG0541 Signal recognition particle GTPase~InterProIPR004780:IPR003593:IPR013822:IPR000897:IPR 004125~KEGG: dol:Dole_2310 signal recognition particle protein~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B GTP-binding signal recognition particle SRP54 helical bundle%3B Signal peptide binding (SRP54) M- domain protein~SMART: AAA ATPase~SPTR: Signal recognition particle protein%3B~TIGRFAM: signal recognition particle protein~IMG reference gene:2505284553~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain%3B Signal peptide binding domain~TIGRFAM: signal recognition particle protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1240 Thein_1241 Thein_1241 Thein_1241 1305413 1305658 + ribosomal protein S16 COGs: COG0228 Ribosomal protein S16~InterPro IPR000307~KEGG: csc:Csac_2157 30S ribosomal protein S16~PFAM: ribosomal protein S16~SPTR: 30S ribosomal protein S16%3B~TIGRFAM: ribosomal protein S16~IMG reference gene:2505284554~PFAM: Ribosomal protein S16~TIGRFAM: ribosomal protein S16 gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1241 Thein_1242 Thein_1242 Thein_1242 1305723 1305962 + RNA-binding protein (KH domain) COGs: COG1837 RNA-binding protein (contains KH domain)~InterPro IPR020627:IPR004088~KEGG: dba:Dbac_3306 RNA-binding protein (KH domain)~SPTR: RNA-binding protein (KH domain)%3B~IMG reference gene:2505284555 gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1242 Thein_1243 Thein_1243 Thein_1243 1305966 1306499 + 16S rRNA processing protein RimM COGs: COG0806 RimM protein required for 16S rRNA processing~InterPro IPR011961:IPR002676:IPR007903~KEGG: syd:Syncc9605_0130 16S rRNA-processing protein RimM~PFAM: PRC-barrel domain protein%3B RimM protein~SPTR: 16S rRNA processing protein RimM%3B~TIGRFAM: 16S rRNA processing protein RimM~IMG reference gene:2505284556~PFAM: PRC-barrel domain%3B RimM N-terminal domain~TIGRFAM: 16S rRNA processing protein RimM gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1243 Thein_1244 Thein_1244 Thein_1244 1307012 1309003 - acetate/CoA ligase COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase~InterPro IPR011904:IPR000873:IPR020845~KEGG: dak:DaAHT2_2198 acetate/CoA ligase~PFAM: AMP-dependent synthetase and ligase~SPTR: Acetate/CoA ligase%3B~TIGRFAM: acetate/CoA ligase~IMG reference gene:2505284557~PFAM: Domain of unknown function (DUF3448)%3B AMP-binding enzyme~TIGRFAM: acetate--CoA ligase gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1244 Thein_1245 Thein_1245 Thein_1245 1309211 1310392 - SufBD protein COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component~InterPro IPR000825~KEGG: dba:Dbac_1810 SufBD protein~PFAM: SufBD protein~SPTR: SufBD protein%3B~IMG reference gene:2505284558~PFAM: Uncharacterized protein family (UPF0051) gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1245 Thein_1246 Thein_1246 Thein_1246 1310356 1311120 - ABC transporter related protein COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component~InterPro IPR003593:IPR003439~KEGG: deg:DehalGT_0696 ABC transporter related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Iron-regulated ABC transporter%2C atp-binding protein%2C SufC%3B~IMG reference gene:2505284559~PFAM: ABC transporter~TIGRFAM: FeS assembly ATPase SufC gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1246 Thein_1247 Thein_1247 Thein_1247 1311247 1312356 + alanine racemase COGs: COG0787 Alanine racemase~InterPro IPR000821:IPR001608:IPR011079:IPR020622~KEGG: sfu:Sfum_0562 alanine racemase~PFAM: alanine racemase domain protein~PRIAM: Alanine racemase~SPTR: Alanine racemase%3B~TIGRFAM: alanine racemase~manually curated~IMG reference gene:2505284560~PFAM: Alanine racemase%2C C-terminal domain%3B Alanine racemase%2C N-terminal domain~TIGRFAM: alanine racemase gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1247 Thein_1248 Thein_1248 Thein_1248 1312366 1312707 + twin-arginine translocation protein%2C TatB subunit COGs: COG1826 Sec-independent protein secretion pathway components~InterPro IPR018448:IPR003369:IPR003998~KEGG: sul:SYO3AOP1_1474 twin-arginine translocation protein%2C TatB subunit~PFAM: sec-independent translocation protein mttA/Hcf106~SPTR: Twin-arginine translocation protein%2C TatB subunit%3B~TIGRFAM: twin-arginine translocation protein%2C TatB subunit~IMG reference gene:2505284561~PFAM: mttA/Hcf106 family~TIGRFAM: twin arginine-targeting protein translocase%2C TatA/E family%3B twin arginine-targeting protein translocase TatB gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1248 Thein_1249 Thein_1249 Thein_1249 1312691 1313404 + Sec-independent periplasmic protein translocase COGs: COG0805 Sec-independent protein secretion pathway component TatC~InterPro IPR002033~KEGG: dsa:Desal_1554 sec-independent protein translocase%2C TatC subunit~PFAM: Sec-independent periplasmic protein translocase~SPTR: Sec-independent protein translocase%2C TatC subunit%3B~IMG reference gene:2505284562~PFAM: Sec-independent protein translocase protein (TatC)~TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1249 Thein_1250 Thein_1250 Thein_1250 1313587 1313967 + Cytochrome c%2C class III%2C conserved region InterPro IPR020942:IPR002322:IPR011031~KEGG: tye:THEYE_A1056 cytochrome c3 chain A~PFAM: Cytochrome c%2C class III%2C conserved region~SPTR: Chain A%2C Cytochrome C3 From Desulfomicrobium Baculatus%3B~IMG reference gene:2505284563~PFAM: Class III cytochrome C family gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1250 Thein_1251 Thein_1251 Thein_1251 1314027 1314797 + 4Fe-4S ferredoxin iron-sulfur binding domain protein COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR017900:IPR017896~KEGG: glo:Glov_3347 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2505284564 gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1251 Thein_1252 Thein_1252 Thein_1252 1314814 1315209 + hypothetical protein InterPro IPR011031~KEGG: glo:Glov_3348 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284565 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1252 Thein_1253 Thein_1253 Thein_1253 1315305 1317347 + PAS modulated sigma54 specific transcriptional regulator%2C Fis family COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains~InterProIPR000014:IPR003593:IPR013656:IPR013767:IPR 002078:IPR002197:IPR020441:IPR000700~KEGG: drt:Dret_0447 putative sigma54 specific transcriptional regulator~PFAM: sigma-54 factor interaction domain-containing protein%3B PAS fold domain protein%3B PAS fold-4 domain protein%3B helix-turn-helix Fis-type~SMART: AAA ATPase%3B PAS domain containing protein~SPTR: Putative sigma54 specific transcriptional regulator%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284566~PFAM: Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1253 Thein_1254 Thein_1254 Thein_1254 1317709 1317915 + hypothetical protein KEGG: rpb:RPB_0594 apolipoprotein N-acyltransferase~IMG reference gene:2505284567 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1254 Thein_1255 Thein_1255 Thein_1255 1317927 1319117 + Polysulphide reductase NrfD COGs: COG5557 Polysulphide reductase~InterPro IPR005614~KEGG: glo:Glov_3346 polysulphide reductase NrfD~PFAM: Polysulphide reductase NrfD~SPTR: Polysulphide reductase NrfD%3B~IMG reference gene:2505284568~PFAM: Polysulphide reductase%2C NrfD gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1255 Thein_1256 Thein_1256 Thein_1256 1319165 1319485 + transcriptional regulator%2C MerR family COGs: COG0789 transcriptional regulator protein~InterPro IPR000551~KEGG: sfu:Sfum_0360 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR~SPTR: Transcriptional regulator%2C MerR family%3B~IMG reference gene:2505284569~PFAM: MerR family regulatory protein gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1256 Thein_1257 Thein_1257 Thein_1257 1319760 1320944 + Polysulphide reductase NrfD COGs: COG5557 Polysulphide reductase~InterPro IPR005614~KEGG: glo:Glov_3346 polysulphide reductase NrfD~PFAM: Polysulphide reductase NrfD~SPTR: Polysulphide reductase NrfD%3B~IMG reference gene:2505284570~PFAM: Polysulphide reductase%2C NrfD gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1257 Thein_1258 Thein_1258 Thein_1258 1320980 1321570 - ribosome biogenesis GTP-binding protein YsxC COGs: COG0218 GTPase~InterPro IPR019987:IPR005225:IPR002917~KEGG: tte:TTE0628 ribosome biogenesis GTP-binding protein YsxC~PFAM: GTP-binding protein HSR1-related~SPTR: Probable GTP-binding protein engB%3B~TIGRFAM: ribosome biogenesis GTP-binding protein YsxC%3B small GTP-binding protein~IMG reference gene:2505284571~PFAM: GTPase of unknown function~TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB%3B small GTP-binding protein domain gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1258 Thein_1259 Thein_1259 Thein_1259 1321657 1322517 + ATPase associated with various cellular activities AAA_5 COGs: COG0714 MoxR-like ATPase~InterPro IPR003593:IPR011704~KEGG: sus:Acid_7147 ATPase~PFAM: ATPase associated with various cellular activities AAA_5~SMART: AAA ATPase~SPTR: ATPase associated with various cellular activities%2C AAA_5%3B~IMG reference gene:2505284572~PFAM: AAA domain (dynein-related subfamily) gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1259 Thein_1260 Thein_1260 Thein_1260 1322519 1324342 + hypothetical protein KEGG: gur:Gura_0167 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284573 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1260 Thein_1261 Thein_1261 Thein_1261 1324348 1325460 + rRNA (guanine-N(2)-)-methyltransferase COGs: COG0116 N6-adenine-specific DNA methylase~InterPro IPR000241:IPR002052:IPR004114~KEGG: pca:Pcar_2256 N6-adenine-specific DNA methylase~PFAM: RNA methylase~PRIAM: rRNA (guanine-N(2)-)-methyltransferase~SPTR: Putative RNA methylase%3B~IMG reference gene:2505284574~PFAM: Putative RNA methylase family UPF0020 gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1261 Thein_1262 Thein_1262 Thein_1262 1325438 1326757 - RNA-metabolising metallo-beta-lactamase COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing~InterPro IPR011108~KEGG: tte:TTE0716 RNA processing exonuclease~PFAM: RNA-metabolising metallo-beta-lactamase~SPTR: Predicted exonuclease of the beta-lactamase fold involved in RNA processing%3B~IMG reference gene:2505284575~PFAM: Metallo-beta-lactamase superfamily%3B RNA-metabolising metallo-beta-lactamase%3B Beta-Casp domain gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1262 Thein_1263 Thein_1263 Thein_1263 1326826 1327194 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: ade:Adeh_2361 hypothetical protein~PFAM: type IV pilus assembly PilZ~SPTR: Conserved region 2266%3B~IMG reference gene:2505284576~PFAM: PilZ domain gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1263 Thein_1264 Thein_1264 Thein_1264 1327194 1327973 + Prepilin peptidase COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase~InterPro IPR010627:IPR000045:IPR014032~KEGG: ppd:Ppro_0982 prepilin peptidase~PFAM: peptidase A24A domain protein%3B peptidase A24A prepilin type IV~PRIAM: Prepilin peptidase~SPTR: Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A%3B~IMG reference gene:2505284577~PFAM: Bacterial Peptidase A24 N-terminal domain%3B Type IV leader peptidase family gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1264 Thein_1265 Thein_1265 Thein_1265 1328444 1328740 + hypothetical protein KEGG: dak:DaAHT2_0915 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284578 gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1265 Thein_1266 Thein_1266 Thein_1266 1328766 1329059 + hypothetical protein KEGG: dak:DaAHT2_0914 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284579~PFAM: Cell division protein ZapA gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1266 Thein_1267 Thein_1267 Thein_1267 1329441 1331024 + metal dependent phosphohydrolase COGs: COG1418 HD superfamily hydrolase~InterProIPR017705:IPR006675:IPR004087:IPR003607:IPR 018111:IPR006674:IPR004088~KEGG: sfu:Sfum_2578 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain%3B K Homology%2C type 1%2C subgroup~SMART: metal-dependent phosphohydrolase HD region%3B KH domain protein~SPTR: HDIG%3B~TIGRFAM: YmdA/YtgF protein%3B metal dependent phophohydrolase~IMG reference gene:2505284581~PFAM: KH domain%3B HD domain%3B Domain of unknown function (DUF3552)~TIGRFAM: conserved hypothetical protein YmdA/YtgF%3B uncharacterized domain HDIG gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1267 Thein_1268 Thein_1268 Thein_1268 1331014 1331793 + metallophosphoesterase COGs: COG1692 conserved hypothetical protein~InterPro IPR005235:IPR004843~KEGG: mta:Moth_1083 hypothetical protein~PFAM: metallophosphoesterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284582~TIGRFAM: metallophosphoesterase%2C MG_246/BB_0505 family gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1268 Thein_1269 Thein_1269 Thein_1269 1331790 1332479 - ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481:IPR007167~KEGG: dal:Dalk_1640 ferric uptake regulator%2C Fur family~PFAM: FeoA family protein%3B ferric-uptake regulator~SPTR: Ferric uptake regulator%2C Fur family%3B~IMG reference gene:2505284583~PFAM: FeoA domain%3B Ferric uptake regulator family gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1269 Thein_1270 Thein_1270 Thein_1270 1332885 1334132 - integron integrase COGs: COG4974 Site-specific recombinase XerD~InterPro IPR011946:IPR002104~KEGG: cpb:Cphamn1_1145 putative transcriptional regulator%2C TetR family~PFAM: integrase family protein~SPTR: Putative transcriptional regulator%2C TetR family%3B~TIGRFAM: integron integrase~IMG reference gene:2505284584~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family~TIGRFAM: integron integrase gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1270 Thein_1271 Thein_1271 Thein_1271 1334482 1335039 + hypothetical protein KEGG: pyo:PY06876 hypothetical protein~SPTR: Putative uncharacterized protein PY06876%3B~IMG reference gene:2505284585 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1271 Thein_1272 Thein_1272 Thein_1272 1335111 1336106 + hypothetical protein KEGG: pfh:PFHG_02988 conserved hypothetical protein~SPTR: Glycerophosphoryl diester phosphodiesterase%3B~IMG reference gene:2505284586 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1272 Thein_1273 Thein_1273 Thein_1273 1336093 1336740 + hypothetical protein KEGG: tal:Thal_1286 type III restriction protein res subunit~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2505284587 gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1273 Thein_1274 Thein_1274 Thein_1274 1336737 1336901 + hypothetical protein KEGG: gla:GL50803_16039 hypothetical protein~IMG reference gene:2505284588 gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1274 Thein_1275 Thein_1275 Thein_1275 1336954 1337895 + transposase IS4 family protein COGs: COG3039 Transposase and inactivated derivatives IS5 family~InterPro IPR002559~KEGG: cyn:Cyan7425_5319 transposase IS4 family protein~PFAM: transposase IS4 family protein~SPTR: Transposase%3B~IMG reference gene:2505284589~PFAM: Transposase DDE domain%3B Transposase domain (DUF772) gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1275 Thein_1276 Thein_1276 Thein_1276 1338097 1338279 + pseudogene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1276 Thein_1277 Thein_1277 Thein_1277 1338476 1338739 + hypothetical protein KEGG: pph:Ppha_2428 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284591 gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1277 Thein_1278 Thein_1278 Thein_1278 1338764 1339018 + Protein of unknown function DUF2442 InterPro IPR018841~KEGG: dat:HRM2_09460 predicted death-on-curing family protein~PFAM: Protein of unknown function DUF2442~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284592~PFAM: Protein of unknown function (DUF2442) gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1278 Thein_1279 Thein_1279 Thein_1279 1339264 1340244 + KpsF/GutQ family protein COGs: COG0794 sugar phosphate isomerase involved in capsule formation~InterPro IPR004800:IPR000644:IPR001347~KEGG: dak:DaAHT2_1635 KpsF/GutQ family protein~PFAM: sugar isomerase (SIS)%3B CBS domain containing protein~PRIAM: Arabinose-5-phosphate isomerase~SMART: CBS domain containing protein~SPTR: KpsF/GutQ family protein%3B~TIGRFAM: KpsF/GutQ family protein~IMG reference gene:2505284593~PFAM: CBS domain%3B SIS domain~TIGRFAM: KpsF/GutQ family protein gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1279 Thein_1280 Thein_1280 Thein_1280 1340260 1341837 + Starch synthase catalytic domain-containing protein COGs: COG0297 Glycogen synthase~InterPro IPR013534:IPR001296~KEGG: dak:DaAHT2_2094 starch synthase catalytic domain protein~PFAM: Starch synthase catalytic domain-containing protein%3B glycosyl transferase group 1~SPTR: Starch (Bacterial glycogen) synthase%3B~IMG reference gene:2505284594~PFAM: Starch synthase catalytic domain%3B Glycosyl transferases group 1~TIGRFAM: glycogen/starch synthases%2C ADP-glucose type gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1280 Thein_1281 Thein_1281 Thein_1281 1341854 1343230 + pyridoxal-phosphate dependent TrpB-like enzyme COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB)~InterPro IPR006316:IPR001926:IPR006653~KEGG: dau:Daud_1205 tryptophan synthase subunit beta~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~PRIAM: Tryptophan synthase~SPTR: Pyridoxal-phosphate dependent TrpB-like enzyme%3B~TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme~IMG reference gene:2505284595~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1281 Thein_1282 Thein_1282 Thein_1282 1343978 1345489 - Mg chelatase%2C subunit ChlI COGs: COG0606 ATPase with chaperone activity~InterPro IPR004482:IPR003593:IPR000523:IPR001208~KEGG: dal:Dalk_5279 Mg chelatase%2C subunit ChlI~PFAM: magnesium chelatase ChlI subunit~SMART: AAA ATPase~SPTR: Mg chelatase%2C subunit ChlI%3B~TIGRFAM: Mg chelatase%2C subunit ChlI~IMG reference gene:2505284596~PFAM: Magnesium chelatase%2C subunit ChlI~TIGRFAM: Mg chelatase-related protein gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1282 Thein_1283 Thein_1283 Thein_1283 1345829 1346917 - Citrate transporter COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease~InterPro IPR004680~KEGG: nam:NAMH_0449 inner membrane protein YbiR~PFAM: Citrate transporter~SPTR: Inner membrane protein YbiR%3B~IMG reference gene:2505284597~PFAM: Citrate transporter gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1283 Thein_1284 Thein_1284 Thein_1284 1347329 1348021 - hypothetical protein KEGG: bfo:BRAFLDRAFT_106578 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284598 gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1284 Thein_1285 Thein_1285 Thein_1285 1348279 1349433 + tRNA pseudouridine synthase D TruD COGs: COG0585 conserved hypothetical protein~InterPro IPR001656:IPR020119:IPR011760~KEGG: tye:THEYE_A0547 tRNA pseudouridine synthase D~PFAM: tRNA pseudouridine synthase D TruD~SPTR: tRNA pseudouridine synthase D%3B~IMG reference gene:2505284599~PFAM: tRNA pseudouridine synthase D (TruD)~TIGRFAM: tRNA pseudouridine synthase%2C TruD family gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1285 Thein_1286 Thein_1286 Thein_1286 1349430 1352186 - preprotein translocase%2C SecA subunit COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase)~InterProIPR000185:IPR011115:IPR011130:IPR011116:IPR 004027:IPR020937:IPR014018~KEGG: gme:Gmet_0951 preprotein translocase subunit SecA~PFAM: SecA DEAD domain protein%3B SecA preprotein cross-linking region%3B SecA Wing and Scaffold%3B SEC-C motif domain protein~SPTR: Protein translocase subunit secA%3B~TIGRFAM: preprotein translocase%2C SecA subunit~IMG reference gene:2505284600~PFAM: SecA DEAD-like domain%3B SecA preprotein cross-linking domain%3B SEC-C motif%3B SecA Wing and Scaffold domain~TIGRFAM: preprotein translocase%2C SecA subunit gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1286 Thein_1287 Thein_1287 Thein_1287 1352718 1353425 - MotA/TolQ/ExbB proton channel COGs: COG0811 Biopolymer transport protein~InterPro IPR002898~KEGG: dat:HRM2_30590 TolQ1~PFAM: MotA/TolQ/ExbB proton channel~SPTR: TolQ1%3B~IMG reference gene:2505284601~PFAM: MotA/TolQ/ExbB proton channel family gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1287 Thein_1288 Thein_1288 Thein_1288 1353427 1354272 - hypothetical protein COGs: COG2107 periplasmic solute-binding protein~KEGG: dde:Dde_0799 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284602~PFAM: Putative periplasminc binding protein (DUF178) gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1288 Thein_1289 Thein_1289 Thein_1289 1354251 1354868 - futalosine nucleosidase InterPro IPR019963:IPR000845~KEGG: dak:DaAHT2_0723 futalosine nucleosidase~PFAM: purine or other phosphorylase family 1~SPTR: Futalosine nucleosidase%3B~TIGRFAM: futalosine nucleosidase~IMG reference gene:2505284603~PFAM: Phosphorylase superfamily~TIGRFAM: futalosine nucleosidase gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1289 Thein_1290 Thein_1290 Thein_1290 1354869 1356233 - phosphate uptake regulator%2C PhoU COGs: COG0704 Phosphate uptake regulator~InterPro IPR008170:IPR002727:IPR018445~KEGG: dal:Dalk_1431 phosphate uptake regulator%2C PhoU~PFAM: PhoU family protein%3B Putitive phosphate transport regulator~SPTR: Phosphate uptake regulator%2C PhoU%3B~TIGRFAM: phosphate transport system regulatory protein PhoU~IMG reference gene:2505284604~PFAM: Protein of unknown function DUF47%3B PhoU domain~TIGRFAM: TIGR00153 family protein%3B phosphate transport system regulatory protein PhoU gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1290 Thein_1291 Thein_1291 Thein_1291 1356279 1357043 - phosphate ABC transporter%2C ATPase subunit COGs: COG1117 ABC-type phosphate transport system ATPase component~InterProIPR005670:IPR003593:IPR003439:IPR017871:IPR 015850~KEGG: dtu:Dtur_0477 phosphate ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: phosphate ABC transporter%2C ATPase subunit~IMG reference gene:2505284605~PFAM: ABC transporter~TIGRFAM: phosphate ABC transporter%2C ATP-binding protein gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1291 Thein_1292 Thein_1292 Thein_1292 1357052 1357912 - phosphate ABC transporter%2C inner membrane subunit PstA COGs: COG0581 ABC-type phosphate transport system permease component~InterPro IPR005672:IPR000515~KEGG: gem:GM21_2504 phosphate ABC transporter%2C inner membrane subunit PstA~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Phosphate ABC transporter%2C inner membrane subunit PstA%3B~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstA~IMG reference gene:2505284606~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstA gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1292 Thein_1293 Thein_1293 Thein_1293 1357915 1358802 - phosphate ABC transporter%2C inner membrane subunit PstC COGs: COG0573 ABC-type phosphate transport system permease component~InterPro IPR011864:IPR000515~KEGG: pmu:PM0435 hypothetical protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Phosphate transport system permease protein pstC%3B~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstC~IMG reference gene:2505284607~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstC%3B phosphate ABC transporter%2C permease protein PstA gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1293 Thein_1294 Thein_1294 Thein_1294 1358873 1359985 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG2768 Uncharacterized Fe-S center protein~InterPro IPR017900:IPR017896~KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2505284608~PFAM: 4Fe-4S binding domain gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1294 Thein_1295 Thein_1295 Thein_1295 1359982 1360431 + protein of unknown function DUF82 COGs: COG1656 conserved hypothetical protein~InterPro IPR002782~KEGG: sfu:Sfum_0072 hypothetical protein~PFAM: protein of unknown function DUF82~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284609~PFAM: Protein of unknown function DUF82 gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1295 Thein_1296 Thein_1296 Thein_1296 1360400 1361245 - Nickel transport complex%2C NikM subunit%2C transmembrane InterPro IPR019613~KEGG: ddf:DEFDS_0032 cobalt ABC transporter substrate-binding protein~PFAM: Nickel transport complex%2C NikM subunit%2C transmembrane~SPTR: Cobalt ABC transporter%2C substrate-binding protein%3B~IMG reference gene:2505284610~PFAM: Nickel uptake substrate-specific transmembrane region gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1296 Thein_1297 Thein_1297 Thein_1297 1361382 1362464 - beta-lactamase COGs: COG1680 Beta-lactamase class C and other penicillin binding protein~InterPro IPR001466~KEGG: dal:Dalk_3805 beta-lactamase~PFAM: beta-lactamase~SPTR: Beta-lactamase%3B~IMG reference gene:2505284611~PFAM: Beta-lactamase gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1297 Thein_1298 Thein_1298 Thein_1298 1362457 1363356 - Hsp33 protein COGs: COG1281 Disulfide bond chaperones of the HSP33 family~InterPro IPR000397~KEGG: geo:Geob_0020 HSP33-like chaperonin~PFAM: Hsp33 protein~SPTR: 33 kDa chaperonin%3B~IMG reference gene:2505284612~PFAM: Hsp33 protein gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1298 Thein_1299 Thein_1299 Thein_1299 1363356 1364198 - pyrroline-5-carboxylate reductase COGs: COG0345 Pyrroline-5-carboxylate reductase~InterPro IPR000304:IPR004455~KEGG: dak:DaAHT2_1074 pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase coenzyme F420-dependent~PRIAM: Pyrroline-5-carboxylate reductase~SPTR: Pyrroline-5-carboxylate reductase%3B~TIGRFAM: pyrroline-5-carboxylate reductase~IMG reference gene:2505284613~PFAM: NADP oxidoreductase coenzyme F420-dependent~TIGRFAM: pyrroline-5-carboxylate reductase gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1299 Thein_1300 Thein_1300 Thein_1300 1364280 1365659 + argininosuccinate lyase COGs: COG0165 Argininosuccinate lyase~InterPro IPR009049:IPR000362:IPR020557:IPR003031~KEGG: pca:Pcar_2418 argininosuccinate lyase~PFAM: fumarate lyase~SPTR: Argininosuccinate lyase%3B~TIGRFAM: argininosuccinate lyase~IMG reference gene:2505284614~PFAM: Lyase~TIGRFAM: argininosuccinate lyase gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1300 Thein_1301 Thein_1301 Thein_1301 1365664 1366914 + histidyl-tRNA synthetase COGs: COG0124 Histidyl-tRNA synthetase~InterProIPR015807:IPR002314:IPR004154:IPR004516:IPR 006195~KEGG: sat:SYN_02534 histidyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein~PRIAM: Histidine--tRNA ligase~SPTR: Histidyl-tRNA synthetase%3B~TIGRFAM: histidyl-tRNA synthetase~IMG reference gene:2505284615~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: histidyl-tRNA synthetase gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1301 Thein_1302 Thein_1302 Thein_1302 1366914 1367636 + protein of unknown function DUF81 InterPro IPR002781~KEGG: sfu:Sfum_2931 hypothetical protein~PFAM: protein of unknown function DUF81~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284616~PFAM: Sulfite exporter TauE/SafE gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1302 Thein_1303 Thein_1303 Thein_1303 1367638 1367970 + type IV pilus assembly PilZ InterPro IPR011752:IPR009875~KEGG: scl:sce5854 putative type IV pilus assembly protein~PFAM: type IV pilus assembly PilZ~SPTR: Putative type IV pilus assembly protein%3B~IMG reference gene:2505284617~PFAM: PilZ domain~TIGRFAM: Myxococcus xanthus paralogous domain TIGR02266 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1303 Thein_1304 Thein_1304 Thein_1304 1368066 1368311 + hypothetical protein KEGG: dak:DaAHT2_2538 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284618 gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1304 Thein_1305 Thein_1305 Thein_1305 1368298 1368720 + hypothetical protein KEGG: sat:SYN_00587 hypothetical protein~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2505284619~PFAM: ATP synthase I chain gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1305 Thein_1306 Thein_1306 Thein_1306 1368724 1369470 + ATP synthase F0%2C A subunit COGs: COG0356 F0F1-type ATP synthase subunit a~InterPro IPR000568~KEGG: sfu:Sfum_1605 ATP synthase F0%2C A subunit~PFAM: H+transporting two-sector ATPase A subunit~SPTR: ATP synthase subunit a%3B~TIGRFAM: ATP synthase F0%2C A subunit~IMG reference gene:2505284620~PFAM: ATP synthase A chain~TIGRFAM: ATP synthase subunit 6 (eukaryotes)%2Calso subunit A (prokaryotes) gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1306 Thein_1307 Thein_1307 Thein_1307 1369555 1369905 + ATP synthase F0%2C C subunit InterPro IPR005953:IPR002379:IPR020537:IPR000454~KEGG: dds:Ddes_2255 ATP synthase F0%2C C subunit~PFAM: H+transporting two-sector ATPase C subunit~SPTR: ATP synthase subunit c%3B~TIGRFAM: ATP synthase F0%2C C subunit~IMG reference gene:2505284621~PFAM: ATP synthase subunit C~TIGRFAM: ATP synthase%2C F0 subunit c gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1307 Thein_1308 Thein_1308 Thein_1308 1370032 1370868 + tol-pal system protein YbgF COGs: COG1729 conserved hypothetical protein~InterPro IPR014162:IPR019734:IPR013026~KEGG: gbm:Gbem_3515 tol-pal system protein YbgF~SMART: Tetratricopeptide repeat~SPTR: Tol-pal system protein YbgF%3B~TIGRFAM: tol-pal system protein YbgF~IMG reference gene:2505284622~PFAM: Tetratricopeptide repeat~TIGRFAM: tol-pal system protein YbgF gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1308 Thein_1309 Thein_1309 Thein_1309 1370846 1371979 + Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828~KEGG: gur:Gura_2130 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2505284623~PFAM: Receptor family ligand binding region gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1309 Thein_1310 Thein_1310 Thein_1310 1371992 1372396 + hypothetical protein COGs: COG0071 Molecular chaperone (small heat shock protein)~InterPro IPR002068~KEGG: sti:Sthe_0513 heat shock protein HSP20~SPTR: Heat shock protein Hsp20%3B~IMG reference gene:2505284624~PFAM: Hsp20/alpha crystallin family gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1310 Thein_1311 Thein_1311 Thein_1311 1372566 1373561 - lipopolysaccharide heptosyltransferase I COGs: COG0859 ADP-heptose:LPS heptosyltransferase~InterPro IPR011908:IPR002201~KEGG: tye:THEYE_A0945 lipopolysaccharide heptosyltransferase II~PFAM: glycosyl transferase family 9~SPTR: Lipopolysaccharide heptosyltransferase II%3B~TIGRFAM: lipopolysaccharide heptosyltransferase I~IMG reference gene:2505284625~PFAM: Glycosyltransferase family 9 (heptosyltransferase)~TIGRFAM: lipopolysaccharide heptosyltransferase I%3B lipopolysaccharide heptosyltransferase II gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1311 Thein_1312 Thein_1312 Thein_1312 1373542 1374105 - histidinol-phosphate phosphatase family protein COGs: COG0241 Histidinol phosphatase and related phosphatase~InterPro IPR006543:IPR006549:IPR005834~KEGG: nde:NIDE3031 bifunctional lipopolysaccharide heptosyltransferase II/D%2C D-heptose 1%2C7-bisphosphate phosphatase~PFAM: Haloacid dehalogenase domain protein hydrolase~PRIAM: Histidinol-phosphatase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: histidinol-phosphate phosphatase family protein%3B hydrolase%2C HAD-superfamily%2C subfamily IIIA~IMG reference gene:2505284626~PFAM: Polynucleotide kinase 3 phosphatase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIIA%3B D%2CD-heptose 1%2C7-bisphosphate phosphatase%3B histidinol-phosphate phosphatase family domain%3B histidinol-phosphatase gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1312 Thein_1313 Thein_1313 Thein_1313 1374102 1375094 - lipopolysaccharide heptosyltransferase II COGs: COG0859 ADP-heptose:LPS heptosyltransferase~InterPro IPR011910:IPR002201~KEGG: pna:Pnap_0149 lipopolysaccharide heptosyltransferase II~PFAM: glycosyl transferase family 9~SPTR: ADP-heptose--LPS heptosyltransferase II (Modular protein)%3B~TIGRFAM: lipopolysaccharide heptosyltransferase II~IMG reference gene:2505284627~PFAM: Glycosyltransferase family 9 (heptosyltransferase)~TIGRFAM: lipopolysaccharide heptosyltransferase II gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1313 Thein_1314 Thein_1314 Thein_1314 1375487 1376218 + phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase~InterPro IPR006063:IPR006062~KEGG: pca:Pcar_2685 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase~PFAM: histidine biosynthesis protein~PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase~SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase%3B~TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase~IMG reference gene:2505284628~PFAM: Histidine biosynthesis protein~TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1314 Thein_1315 Thein_1315 Thein_1315 1376215 1378200 + ribonuclease II COGs: COG0557 Exoribonuclease R~InterPro IPR001900~KEGG: dak:DaAHT2_0510 exoribonuclease II~PFAM: ribonuclease II~SPTR: Exoribonuclease II%3B~IMG reference gene:2505284629~PFAM: RNB domain~TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1315 Thein_1316 Thein_1316 Thein_1316 1378213 1379172 - response regulator receiver modulated diguanylate cyclase COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain~InterPro IPR000160:IPR001789~KEGG: dak:DaAHT2_1538 response regulator receiver modulated diguanylate cyclase~PFAM: GGDEF domain containing protein%3B response regulator receiver~SMART: GGDEF domain containing protein%3B response regulator receiver~SPTR: Response regulator receiver modulated diguanylate cyclase%3B~TIGRFAM: diguanylate cyclase~IMG reference gene:2505284630~PFAM: Response regulator receiver domain%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1316 Thein_1317 Thein_1317 Thein_1317 1379114 1379608 - NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR000086:IPR020084:IPR020476~KEGG: geo:Geob_3053 NUDIX hydrolase~PFAM: NUDIX hydrolase~SPTR: NUDIX hydrolase%3B~IMG reference gene:2505284631~PFAM: NUDIX domain gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1317 Thein_1318 Thein_1318 Thein_1318 1379605 1380372 - inositol monophosphatase COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family~InterPro IPR000760:IPR020583:IPR020550~KEGG: dak:DaAHT2_0139 inositol monophosphatase~PFAM: inositol monophosphatase~SPTR: Inositol monophosphatase%3B~IMG reference gene:2505284632~PFAM: Inositol monophosphatase family gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1318 Thein_1319 Thein_1319 Thein_1319 1380375 1381439 - translation initiation factor%2C aIF-2BI family COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family~InterPro IPR005251:IPR011559:IPR000649~KEGG: pca:Pcar_2170 aIF-2BI family translation initiation factor~PFAM: initiation factor 2B related~PRIAM: S-methyl-5-thioribose-1-phosphate isomerase~SPTR: Methylthioribose-1-phosphate isomerase%3B~TIGRFAM: translation initiation factor%2C aIF-2BI family%3B eIF-2B alpha/beta/delta-related uncharacterized protein~IMG reference gene:2505284633~PFAM: Initiation factor 2 subunit family~TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins%3B S-methyl-5-thioribose-1-phosphate isomerase gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1319 Thein_1320 Thein_1320 Thein_1320 1381441 1382868 - glutamyl-tRNA(Gln) amidotransferase%2C B subunit COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)~InterPro IPR004413:IPR006075:IPR018027:IPR017958~KEGG: ddf:DEFDS_1934 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B~PFAM: GatB region%3B Asn/Gln amidotransferase~SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B%3B~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C B subunit~IMG reference gene:2505284634~PFAM: GatB/GatE catalytic domain%3B GatB domain~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C B subunit gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1320 Thein_1321 Thein_1321 Thein_1321 1383089 1383478 + hemerythrin-like metal-binding protein COGs: COG2703 Hemerythrin~InterPro IPR012827:IPR012312:IPR016131~KEGG: tmz:Tmz1t_1809 hemerythrin-like metal-binding protein~PFAM: Hemerythrin HHE cation binding domain protein~SPTR: Hemerythrin-like metal-binding protein%3B~TIGRFAM: hemerythrin-like metal-binding protein~IMG reference gene:2505284635~PFAM: Hemerythrin HHE cation binding domain~TIGRFAM: hemerythrin-like metal-binding domain gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1321 Thein_1322 Thein_1322 Thein_1322 1383679 1385088 - glutamyl-tRNA synthetase COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase~InterPro IPR004527:IPR020058:IPR001412:IPR020060~KEGG: sfu:Sfum_1366 glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain~SPTR: Glutamyl-tRNA synthetase%3B~TIGRFAM: glutamyl-tRNA synthetase~IMG reference gene:2505284636~PFAM: tRNA synthetases class I (E and Q)%2C catalytic domain~TIGRFAM: glutamyl-tRNA synthetase%2C bacterial family gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1322 Thein_1323 Thein_1323 Thein_1323 1385118 1385921 - protein of unknown function DUF52 COGs: COG1355 dioxygenase~InterPro IPR002737~KEGG: geo:Geob_3013 protein of unknown function DUF52~PFAM: protein of unknown function DUF52~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284637~PFAM: Memo-like protein gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1323 Thein_1324 Thein_1324 Thein_1324 1386034 1387062 + cell shape determining protein%2C MreB/Mrl family COGs: COG1077 Actin-like ATPase involved in cell morphogenesis~InterPro IPR004753~KEGG: dak:DaAHT2_1933 cell shape determining protein%2C MreB/Mrl family~PFAM: cell shape determining protein MreB/Mrl~SPTR: Cell shape determining protein%2C MreB/Mrl family%3B~TIGRFAM: cell shape determining protein%2C MreB/Mrl family~IMG reference gene:2505284638~PFAM: MreB/Mbl protein~TIGRFAM: cell shape determining protein%2C MreB/Mrl family gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1324 Thein_1325 Thein_1325 Thein_1325 1387066 1387917 + rod shape-determining protein MreC COGs: COG1792 Cell shape-determining protein~InterPro IPR005223:IPR007221~KEGG: gur:Gura_2860 rod shape-determining protein MreC~PFAM: Rod shape-determining protein MreC~SPTR: Rod shape-determining protein MreC%3B~TIGRFAM: rod shape-determining protein MreC~IMG reference gene:2505284639~PFAM: rod shape-determining protein MreC~TIGRFAM: rod shape-determining protein MreC gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1325 Thein_1326 Thein_1326 Thein_1326 1387914 1388417 + hypothetical protein KEGG: neu:NE2068 rod shape-determining MreD transmembrane protein~SPTR: Possible rod shape-determining MreD transmembrane protein%3B~IMG reference gene:2505284640 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1326 Thein_1327 Thein_1327 Thein_1327 1388383 1390221 + penicillin-binding protein 2 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR017790:IPR005311:IPR001460~KEGG: dat:HRM2_35240 MrdA~PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain~PRIAM: Peptidoglycan glycosyltransferase~SPTR: MrdA%3B~TIGRFAM: penicillin-binding protein 2~IMG reference gene:2505284641~PFAM: Penicillin binding protein transpeptidase domain%3B Penicillin-binding Protein dimerisation domain~TIGRFAM: penicillin-binding protein 2 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1327 Thein_1328 Thein_1328 Thein_1328 1390218 1391294 + cell cycle protein COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR001182~KEGG: sat:SYN_00550 rod shape-determining protein~PFAM: cell cycle protein~SPTR: Rod shape-determining protein RodA%3B~IMG reference gene:2505284642~PFAM: Cell cycle protein gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1328 Thein_1329 Thein_1329 Thein_1329 1391434 1391859 + H+transporting two-sector ATPase B/B' subunit InterPro IPR002146~KEGG: dak:DaAHT2_1901 H+transporting two-sector ATPase B/B' subunit~PFAM: H+transporting two-sector ATPase B/B' subunit~SPTR: H+transporting two-sector ATPase B/B' subunit%3B~IMG reference gene:2505284643~PFAM: ATP synthase B/B' CF(0) gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1329 Thein_1330 Thein_1330 Thein_1330 1391859 1392506 + ATP synthase F0%2C B subunit COGs: COG0711 F0F1-type ATP synthase subunit b~InterPro IPR005864:IPR002146~KEGG: dak:DaAHT2_1900 H+transporting two-sector ATPase B/B' subunit~PFAM: H+transporting two-sector ATPase B/B' subunit~SPTR: H+-transporting two-sector ATPase%2C B/B' subunit%3B~TIGRFAM: ATP synthase F0%2C B subunit~IMG reference gene:2505284644~PFAM: ATP synthase B/B' CF(0)~TIGRFAM: ATP synthase%2C F0 subunit b gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1330 Thein_1331 Thein_1331 Thein_1331 1392506 1393057 + ATP synthase F1%2C delta subunit COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein)~InterPro IPR000711~KEGG: dps:DP0831 F0F1 ATP synthase subunit delta~PFAM: H+transporting two-sector ATPase delta (OSCP) subunit~SPTR: ATP synthase subunit delta%3B~TIGRFAM: ATP synthase F1%2C delta subunit~IMG reference gene:2505284645~PFAM: ATP synthase delta (OSCP) subunit~TIGRFAM: ATP synthase%2C F1 delta subunit gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1331 Thein_1332 Thein_1332 Thein_1332 1393059 1394600 + ATP synthase F1%2C alpha subunit COGs: COG0056 F0F1-type ATP synthase alpha subunit~InterProIPR005294:IPR004100:IPR000194:IPR000793:IPR 020003~KEGG: dol:Dole_0601 F0F1 ATP synthase subunit alpha~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein~SPTR: ATP synthase subunit alpha%3B~TIGRFAM: ATP synthase F1%2C alpha subunit~IMG reference gene:2505284646~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta chain%2C C terminal domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: proton translocating ATP synthase%2C F1 alpha subunit gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1332 Thein_1333 Thein_1333 Thein_1333 1394626 1395510 + ATP synthase F1%2C gamma subunit COGs: COG0224 F0F1-type ATP synthase gamma subunit~InterPro IPR000131~KEGG: dak:DaAHT2_1897 ATP synthase F1%2C gamma subunit~PFAM: H+transporting two-sector ATPase gamma subunit~SPTR: ATP synthase F1%2C gamma subunit%3B~TIGRFAM: ATP synthase F1%2C gamma subunit~IMG reference gene:2505284647~PFAM: ATP synthase~TIGRFAM: ATP synthase%2C F1 gamma subunit gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1333 Thein_1334 Thein_1334 Thein_1334 1395551 1396975 + ATP synthase F1%2C beta subunit COGs: COG0055 F0F1-type ATP synthase beta subunit~InterProIPR005722:IPR004100:IPR000194:IPR000793:IPR 020003~KEGG: sfu:Sfum_2582 F0F1 ATP synthase subunit beta~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein~SPTR: ATP synthase subunit beta%3B~TIGRFAM: ATP synthase F1%2C beta subunit~IMG reference gene:2505284648~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta chain%2C C terminal domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: ATP synthase%2C F1 beta subunit gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1334 Thein_1335 Thein_1335 Thein_1335 1396978 1397400 + ATP synthase F1%2C epsilon subunit COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit)~InterPro IPR001469:IPR020546:IPR020547~KEGG: dak:DaAHT2_1895 ATP synthase F1%2C epsilon subunit~PFAM: ATPase%2C F1 complex%2C delta/epsilon subunit-like~SPTR: ATP synthase F1%2C epsilon subunit%3B~TIGRFAM: ATP synthase F1%2C epsilon subunit~IMG reference gene:2505284649~PFAM: ATP synthase%2C Delta/Epsilon chain%2C beta-sandwich domain%3B ATP synthase%2C Delta/Epsilon chain%2C long alpha-helix domain~TIGRFAM: ATP synthase%2C F1 epsilon subunit (delta in mitochondria) gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1335 Thein_1336 Thein_1336 Thein_1336 1397485 1398450 + Glucosamine-1-phosphate N-acetyltransferase COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)~InterPro IPR005835~KEGG: dae:Dtox_0205 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucosamine-1-phosphate N-acetyltransferase~SPTR: Bifunctional protein glmU%3B~IMG reference gene:2505284650~PFAM: Nucleotidyl transferase~TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1336 Thein_1337 Thein_1337 Thein_1337 1398677 1399297 + tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR001537~KEGG: rmr:Rmar_1290 tRNA/rRNA methyltransferase (SpoU)~PFAM: tRNA/rRNA methyltransferase (SpoU)~SPTR: tRNA/rRNA methyltransferase (SpoU)%3B~IMG reference gene:2505284651~PFAM: SpoU rRNA Methylase family gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1337 Thein_1338 Thein_1338 Thein_1338 1399290 1400507 - hypothetical ATPase COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: cbc:CbuK_0640 hypothetical ATPase~SPTR: Hypothetical ATPase%3B~IMG reference gene:2505284652 gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1338 Thein_1339 Thein_1339 Thein_1339 1400689 1401954 - CRISPR-associated protein%2C TIGR02710 family InterPro IPR014082~KEGG: mru:mru_1188 CRISPR-associated protein TIGR02710 family~SPTR: CRISPR-associated protein TIGR02710 family%3B~TIGRFAM: CRISPR-associated protein%2C TIGR02710 family~IMG reference gene:2505284653~PFAM: CRISPR-associated protein (Cas_Cas02710)~TIGRFAM: CRISPR-associated protein%2C TIGR02710 family gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1339 Thein_1340 Thein_1340 Thein_1340 1401944 1402867 - CRISPR-associated RAMP protein%2C Cmr6 family COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR010172:IPR005537~KEGG: sat:SYN_02247 putative cytoplasmic protein~PFAM: protein of unknown function DUF324~SPTR: Hypothetical cytosolic protein%3B~TIGRFAM: CRISPR-associated RAMP protein%2C Cmr6 family~IMG reference gene:2505284654~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1340 Thein_1341 Thein_1341 Thein_1341 1402860 1403285 - CRISPR-associated protein%2C Cmr5 family InterPro IPR010160~KEGG: sat:SYN_02248 putative cytoplasmic protein~PFAM: CRISPR-associated protein TM1791.1~SPTR: Hypothetical cytosolic protein%3B~TIGRFAM: CRISPR-associated protein%2C Cmr5 family~IMG reference gene:2505284655~PFAM: CRISPR-associated protein (Cas_Cmr5)~TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr5 gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1341 Thein_1342 Thein_1342 Thein_1342 1403282 1404169 - CRISPR-associated RAMP protein%2C Cmr4 family COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR013410:IPR005537~KEGG: sat:SYN_02249 hypothetical protein~PFAM: protein of unknown function DUF324~SPTR: Hypothetical exported protein%3B~TIGRFAM: CRISPR-associated RAMP protein%2C Cmr4 family~IMG reference gene:2505284656~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4 gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1342 Thein_1343 Thein_1343 Thein_1343 1404181 1404546 - hypothetical protein COGs: COG4634 conserved hypothetical protein~KEGG: xfa:XF2029 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284657 gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1343 Thein_1344 Thein_1344 Thein_1344 1404543 1404782 - protein of unknown function DUF433 COGs: COG2442 conserved hypothetical protein~InterPro IPR007367~KEGG: ava:Ava_2493 hypothetical protein~PFAM: protein of unknown function DUF433~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284658~PFAM: Protein of unknown function (DUF433) gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1344 Thein_1345 Thein_1345 Thein_1345 1404795 1405835 - CRISPR-associated protein%2C Cmr3 InterPro IPR019117~KEGG: sat:SYN_02250 putative cytoplasmic protein~PFAM: CRISPR-associated protein%2C Cmr3~SPTR: Hypothetical cytosolic protein%3B~IMG reference gene:2505284659~PFAM: CRISPR-associated protein (Cas_Cmr3)~TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr3 gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1345 Thein_1346 Thein_1346 Thein_1346 1405822 1408632 - CRISPR-associated protein%2C Crm2 family COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs)~InterPro IPR013407~KEGG: sat:SYN_02251 HD superfamily hydrolase~SPTR: Hydrolase of the HD superfamily%3B~TIGRFAM: CRISPR-associated protein%2C Crm2 family~IMG reference gene:2505284660~PFAM: CRISPR-associated protein~TIGRFAM: CRISPR-associated protein Cas10/Cmr2%2C subtype III-B gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1346 Thein_1347 Thein_1347 Thein_1347 1408619 1409716 - CRISPR-associated RAMP protein%2C Cmr1 family COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR007522:IPR005537~KEGG: app:CAP2UW1_2204 hypothetical protein~PFAM: protein of unknown function DUF324~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated RAMP protein%2C Cmr1 family~IMG reference gene:2505284661~TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr1 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1347 Thein_1348 Thein_1348 Thein_1348 1414453 1415682 - putative GTP-binding protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: dol:Dole_3137 putative GTP-binding protein~SPTR: Putative GTP-binding protein%3B~IMG reference gene:2505284662 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1348 Thein_1349 Thein_1349 Thein_1349 1415918 1416205 + CRISPR-associated protein Cas2 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR021127~KEGG: cph:Cpha266_2060 CRISPR-associated Cas2 family protein~SPTR: CRISPR-associated protein Cas2%3B~TIGRFAM: CRISPR-associated protein Cas2~IMG reference gene:2505284663~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1349 Thein_1350 Thein_1350 Thein_1350 1416202 1417917 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440:IPR013026~KEGG: sfu:Sfum_1354 hypothetical protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SMART: Tetratricopeptide repeat~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284664 gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1350 Thein_1351 Thein_1351 Thein_1351 1417917 1418933 + CRISPR-associated protein Cas1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR002729~KEGG: dae:Dtox_2974 CRISPR-associated protein Cas1~PFAM: protein of unknown function DUF48~SPTR: CRISPR-associated protein Cas1%3B~TIGRFAM: CRISPR-associated protein Cas1~IMG reference gene:2505284665~PFAM: CRISPR associated protein Cas1~TIGRFAM: CRISPR-associated endonuclease Cas1 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1351 Thein_1352 Thein_1352 Thein_1352 1418938 1419228 + CRISPR-associated protein Cas2 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR021127~KEGG: ava:Ava_4177 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated protein Cas2~IMG reference gene:2505284666~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1352 Thein_1353 Thein_1353 Thein_1353 1419177 1420121 - hypothetical protein KEGG: nhl:Nhal_2827 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284667~PFAM: Uncharacterized conserved protein (DUF2276)~TIGRFAM: CRISPR-associated endoribonuclease Cas6 gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1353 Thein_1354 Thein_1354 Thein_1354 1420173 1420937 - asparagine synthase COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily~InterPro IPR005232:IPR001962~KEGG: ate:Athe_1202 PP-loop domain protein~PFAM: asparagine synthase~SPTR: PP-loop domain protein%3B~IMG reference gene:2505284668~PFAM: Asparagine synthase~TIGRFAM: TIGR00268 family protein gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1354 Thein_1355 Thein_1355 Thein_1355 1420937 1422121 - protein of unknown function DUF39 COGs: COG1900 conserved hypothetical protein~InterPro IPR002708~KEGG: dal:Dalk_1368 protein of unknown function DUF39~PFAM: protein of unknown function DUF39~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284669~PFAM: Domain of unknown function DUF39 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1355 Thein_1356 Thein_1356 Thein_1356 1422130 1422729 - CBS domain containing protein COGs: COG0517 FOG: CBS domain~InterPro IPR000644~KEGG: dak:DaAHT2_0620 putative signal transduction protein with CBS domains~PFAM: CBS domain containing protein~SMART: CBS domain containing protein~SPTR: Putative signal transduction protein with CBS domains%3B~IMG reference gene:2505284670~PFAM: CBS domain gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1356 Thein_1357 Thein_1357 Thein_1357 1422797 1426975 - CoA-substrate-specific enzyme activase COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)~InterPro IPR008275:IPR002731:IPR018709~KEGG: tye:THEYE_A0388 (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein~PFAM: ATPase BadF/BadG/BcrA/BcrD type%3B Protein of unknown function DUF2229%2C CoA enzyme activase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CoA-substrate-specific enzyme activase~IMG reference gene:2505284671~PFAM: 2-hydroxyglutaryl-CoA dehydratase%2C D-component%3B BadF/BadG/BcrA/BcrD ATPase family%3B CoA enzyme activase uncharacterised domain (DUF2229)~TIGRFAM: CoA-substrate-specific enzyme activase%2C putative gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1357 Thein_1358 Thein_1358 Thein_1358 1427177 1427879 - pseudogene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1358 Thein_1359 Thein_1359 Thein_1359 1427976 1428632 - NUDIX hydrolase InterPro IPR000086~KEGG: drm:Dred_1568 NUDIX hydrolase~PFAM: NUDIX hydrolase~SPTR: NUDIX hydrolase%3B~IMG reference gene:2505284673~PFAM: NUDIX domain gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1359 Thein_1360 Thein_1360 Thein_1360 1428720 1429049 - PilT protein domain protein InterPro IPR002716~KEGG: pmx:PERMA_1863 PIN domain protein~PFAM: PilT protein domain protein~SPTR: PIN domain protein%3B~IMG reference gene:2505284674~PFAM: PIN domain gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1360 Thein_1361 Thein_1361 Thein_1361 1429095 1429289 - hypothetical protein KEGG: pmx:PERMA_1862 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2505284675 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1361 Thein_1362 Thein_1362 Thein_1362 1429420 1430223 - Methyltransferase type 12 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013217~KEGG: mba:Mbar_A0730 hypothetical protein~PFAM: Methyltransferase type 12~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284676~PFAM: Methyltransferase domain gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1362 Thein_1363 Thein_1363 Thein_1363 1430306 1431982 - protein of unknown function DUF262 InterPro IPR004919:IPR018651~KEGG: tai:Taci_1486 protein of unknown function DUF262~PFAM: protein of unknown function DUF262%3B Protein of unknown function DUF2081~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284677~PFAM: Uncharacterized conserved protein (DUF2081)%3B Protein of unknown function DUF262 gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1363 Thein_1364 Thein_1364 Thein_1364 1432239 1432481 - hypothetical protein KEGG: kpe:KPK_4939 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284678 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1364 Thein_1365 Thein_1365 Thein_1365 1432682 1433932 + integron integrase COGs: COG4974 Site-specific recombinase XerD~InterPro IPR011946:IPR002104~KEGG: cpb:Cphamn1_1145 putative transcriptional regulator%2C TetR family~PFAM: integrase family protein~SPTR: Putative transcriptional regulator%2C TetR family%3B~TIGRFAM: integron integrase~IMG reference gene:2505284679~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family~TIGRFAM: integron integrase gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1365 Thein_1366 Thein_1366 Thein_1366 1434277 1435809 + hydrogenase%2C Fe-only COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterProIPR006311:IPR013352:IPR004108:IPR003149:IPR 006058:IPR017900:IPR017909:IPR017896~KEGG: pth:PTH_0668 iron only hydrogenase large subunit~PFAM: hydrogenase large subunit domain protein%3B iron hydrogenase small subunit~PRIAM: Ferredoxin hydrogenase~SPTR: Iron only hydrogenase large subunit%2C C-terminal domain%3B~TIGRFAM: hydrogenase%2C Fe-only~IMG reference gene:2505284680~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B Iron hydrogenase small subunit~TIGRFAM: hydrogenase%2C Fe-only gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1366 Thein_1367 Thein_1367 Thein_1367 1436039 1436674 - adenylate kinase InterPro IPR000850~KEGG: dol:Dole_1146 adenylate kinase-like kinase~PFAM: adenylate kinase~SPTR: Adenylate kinase%3B~IMG reference gene:2505284681~PFAM: Adenylate kinase gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1367 Thein_1368 Thein_1368 Thein_1368 1436681 1437643 - signal recognition particle-docking protein FtsY COGs: COG0552 Signal recognition particle GTPase~InterPro IPR004390:IPR003593:IPR013822:IPR000897~KEGG: sfu:Sfum_2460 signal recognition particle-docking protein FtsY~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B GTP-binding signal recognition particle SRP54 helical bundle~SMART: AAA ATPase~SPTR: Cell division transporter substrate-binding protein FtsY%3B~TIGRFAM: signal recognition particle-docking protein FtsY~IMG reference gene:2505284682~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain~TIGRFAM: signal recognition particle-docking protein FtsY gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1368 Thein_1369 Thein_1369 Thein_1369 1437714 1438784 + branched-chain amino acid aminotransferase COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase~InterPro IPR005786:IPR001544:IPR018300~KEGG: dak:DaAHT2_2175 branched-chain amino acid aminotransferase~PFAM: aminotransferase class IV~PRIAM: Branched-chain-amino-acid transaminase~SPTR: Branched-chain-amino-acid aminotransferase%3B~TIGRFAM: branched-chain amino acid aminotransferase~IMG reference gene:2505284683~PFAM: Aminotransferase class IV~TIGRFAM: branched-chain amino acid aminotransferase%2C group II gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1369 Thein_1370 Thein_1370 Thein_1370 1438723 1439922 - Sigma 54 interacting domain protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR002078~KEGG: aae:aq_164 NtrC family transcriptional regulator~PFAM: sigma-54 factor interaction domain-containing protein~SPTR: Transcriptional regulator (NtrC family)%3B~IMG reference gene:2505284684~PFAM: Sigma-54 interaction domain gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1370 Thein_1371 Thein_1371 Thein_1371 1440279 1440998 + ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439:IPR017871~KEGG: nde:NIDE3338 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC-type multidrug transport system%2C ATPase component%3B~manually curated~IMG reference gene:2505284686~PFAM: ABC transporter gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1371 Thein_1372 Thein_1372 Thein_1372 1440995 1441786 + ABC-2 type transporter InterPro IPR013525:IPR000412~KEGG: nde:NIDE3335 putative ABC transporter ATP-binding and permease~PFAM: ABC-2 type transporter~SPTR: ABC-2 type transporter%3B~IMG reference gene:2505284687~PFAM: ABC-2 type transporter gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1372 Thein_1373 Thein_1373 Thein_1373 1441889 1442332 + ribosomal protein L13 COGs: COG0102 Ribosomal protein L13~InterPro IPR005823:IPR005822~KEGG: trq:TRQ2_1346 50S ribosomal protein L13~PFAM: ribosomal protein L13~SPTR: 50S ribosomal protein L13%3B~TIGRFAM: ribosomal protein L13~IMG reference gene:2505284688~PFAM: Ribosomal protein L13~TIGRFAM: ribosomal protein L13%2C bacterial type gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1373 Thein_1374 Thein_1374 Thein_1374 1442346 1442747 + ribosomal protein S9 COGs: COG0103 Ribosomal protein S9~InterPro IPR000754:IPR020574~KEGG: dak:DaAHT2_0353 ribosomal protein S9~PFAM: ribosomal protein S9~SPTR: 30S ribosomal protein S9%3B~IMG reference gene:2505284689~PFAM: Ribosomal protein S9/S16 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1374 Thein_1375 Thein_1375 Thein_1375 1442796 1443836 + N-acetyl-gamma-glutamyl-phosphate reductase COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase~InterPro IPR000706:IPR000534:IPR012280~KEGG: tye:THEYE_A1632 N-acetyl-gamma-glutamyl-phosphate reductase~PFAM: Semialdehyde dehydrogenase NAD - binding%3B Semialdehyde dehydrogenase dimerisation region~PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase~SPTR: N-acetyl-gamma-glutamyl-phosphate reductase%3B~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase~IMG reference gene:2505284690~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD binding domain~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase%2C common form gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1375 Thein_1376 Thein_1376 Thein_1376 1443839 1444639 + tRNA pseudouridine synthase A COGs: COG0101 Pseudouridylate synthase~InterPro IPR001406:IPR020097~KEGG: sat:SYN_01395 tRNA pseudouridine synthase A~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain~SPTR: tRNA pseudouridine synthase A%3B~TIGRFAM: tRNA pseudouridine synthase A~IMG reference gene:2505284691~PFAM: tRNA pseudouridine synthase~TIGRFAM: pseudouridylate synthase I gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1376 Thein_1377 Thein_1377 Thein_1377 1444602 1445804 + aminotransferase class I and II COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839:IPR004838:IPR001176~KEGG: tye:THEYE_A0342 aspartate aminotransferase~PFAM: aminotransferase class I and II~SPTR: Aspartate aminotransferase%3B~IMG reference gene:2505284692~PFAM: Aminotransferase class I and II gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1377 Thein_1378 Thein_1378 Thein_1378 1445841 1447895 + TonB-dependent receptor plug COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins~InterPro IPR012910:IPR000531~KEGG: noc:Noc_1269 TonB-dependent receptor~PFAM: TonB-dependent receptor plug%3B TonB-dependent receptor~SPTR: TonB-dependent receptor%3B~IMG reference gene:2505284693~PFAM: TonB-dependent Receptor Plug Domain%3B TonB dependent receptor gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1378 Thein_1379 Thein_1379 Thein_1379 1447913 1448494 + hypothetical protein KEGG: rip:RIEPE_0519 glutamate racemase~SPTR: Glutamate racemase%3B~IMG reference gene:2505284694 gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1379 Thein_1380 Thein_1380 Thein_1380 1448481 1450346 + integral membrane sensor hybrid histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR003661:IPR003594:IPR001789:IPR003660:IPR 004358:IPR005467~KEGG: dba:Dbac_1409 PAS/PAC sensor hybrid histidine kinase~PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: PAS/PAC sensor hybrid histidine kinase%3B~IMG reference gene:2505284695~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1380 Thein_1381 Thein_1381 Thein_1381 1450412 1453264 + isoleucyl-tRNA synthetase COGs: COG0060 Isoleucyl-tRNA synthetase~InterProIPR002301:IPR002300:IPR013155:IPR010663:IPR 001412:IPR015905~KEGG: gme:Gmet_0351 isoleucyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ia%3B tRNA synthetase valyl/leucyl anticodon-binding~SPTR: Isoleucyl-tRNA synthetase%3B~TIGRFAM: isoleucyl-tRNA synthetase~IMG reference gene:2505284696~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain%3B Zinc finger found in FPG and IleRS~TIGRFAM: isoleucyl-tRNA synthetase gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1381 Thein_1382 Thein_1382 Thein_1382 1453231 1453698 + lipoprotein signal peptidase COGs: COG0597 Lipoprotein signal peptidase~InterPro IPR001872~KEGG: tkm:TK90_2555 lipoprotein signal peptidase~PFAM: peptidase A8 signal peptidase II~SPTR: Lipoprotein signal peptidase%3B~TIGRFAM: lipoprotein signal peptidase~IMG reference gene:2505284697~PFAM: Signal peptidase (SPase) II~TIGRFAM: lipoprotein signal peptidase gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1382 Thein_1383 Thein_1383 Thein_1383 1453735 1455597 + hypothetical protein KEGG: dba:Dbac_0689 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284698 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1383 Thein_1384 Thein_1384 Thein_1384 1455690 1455980 + Chaperonin Cpn10 COGs: COG0234 Co-chaperonin GroES (HSP10)~InterPro IPR020818:IPR018369:IPR001476~KEGG: dol:Dole_0549 co-chaperonin GroES~PFAM: Chaperonin Cpn10~SPTR: 10 kDa chaperonin%3B~IMG reference gene:2505284699~PFAM: Chaperonin 10 Kd subunit gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1384 Thein_1385 Thein_1385 Thein_1385 1456026 1457642 + chaperonin GroEL COGs: COG0459 Chaperonin GroEL (HSP60 family)~InterPro IPR001844:IPR002423:IPR018370~KEGG: mxa:MXAN_4895 chaperonin GroEL~PFAM: chaperonin Cpn60/TCP-1~SPTR: 60 kDa chaperonin 2%3B~TIGRFAM: chaperonin GroEL~IMG reference gene:2505284700~PFAM: TCP-1/cpn60 chaperonin family~TIGRFAM: chaperonin GroL gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1385 Thein_1386 Thein_1386 Thein_1386 1458015 1458569 + hypothetical protein KEGG: sfu:Sfum_3889 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284701 gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1386 Thein_1387 Thein_1387 Thein_1387 1458645 1460024 + peptidase M48 Ste24p COGs: COG4783 Putative Zn-dependent protease contains TPR repeats~InterPro IPR001915:IPR013026~KEGG: sat:SYN_03195 zinc metalloprotease~PFAM: peptidase M48 Ste24p~SPTR: Zinc metalloprotease%3B~IMG reference gene:2505284702~PFAM: Peptidase family M48 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1387 Thein_1388 Thein_1388 Thein_1388 1460261 1462309 - translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR004540:IPR005225:IPR000795:IPR004161:IPR 005517:IPR000640~KEGG: sfu:Sfum_1044 translation elongation factor G~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV%3B elongation factor G domain-containing protein~SPTR: Translation elongation factor 2 (EF-2/EF-G)%3B~TIGRFAM: translation elongation factor G%3B small GTP-binding protein~IMG reference gene:2505284703~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1388 Thein_1389 Thein_1389 Thein_1389 1462369 1462968 + protein of unknown function DUF205 COGs: COG0344 membrane protein~InterPro IPR020788:IPR003811~KEGG: dps:DP0538 hypothetical protein~PFAM: protein of unknown function DUF205~SPTR: Glycerol-3-phosphate acyltransferase%3B~IMG reference gene:2505284704~PFAM: Domain of unknown function (DUF205)~TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1389 Thein_1390 Thein_1390 Thein_1390 1462983 1463834 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284705~PFAM: Transposase IS200 like gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1390 Thein_1391 Thein_1391 Thein_1391 1463998 1464435 + transcriptional regulator%2C BadM/Rrf2 family COGs: COG1959 transcriptional regulator protein~InterPro IPR000944~KEGG: aco:Amico_1908 transcriptional regulator%2C BadM/Rrf2 family~PFAM: protein of unknown function UPF0074~SPTR: Transcriptional regulator%2C BadM/Rrf2 family%3B~TIGRFAM: transcriptional regulator%2C Rrf2 family~IMG reference gene:2505284706~PFAM: Transcriptional regulator~TIGRFAM: Rrf2 family protein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1391 Thein_1392 Thein_1392 Thein_1392 1464428 1465084 + nitrite and sulphite reductase 4Fe-4S region COGs: COG1251 NAD(P)H-nitrite reductase~InterPro IPR005117:IPR006067:IPR006066:IPR017220~KEGG: mtp:Mthe_0744 nitrite and sulphite reductase 4Fe-4S region~PFAM: nitrite and sulphite reductase 4Fe-4S region%3B nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein~SPTR: Nitrite reductase (NAD(P)H)%3B~IMG reference gene:2505284707~PFAM: Nitrite and sulphite reductase 4Fe-4S domain%3B Nitrite/Sulfite reductase ferredoxin-like half domain gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1392 Thein_1393 Thein_1393 Thein_1393 1465206 1466315 + hypothetical protein KEGG: dps:DP0114 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284708 gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1393 Thein_1394 Thein_1394 Thein_1394 1466396 1467094 - hypothetical protein COGs: COG4923 conserved hypothetical protein~KEGG: oan:Oant_1073 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284709~PFAM: Protein of unknown function (DUF429) gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1394 Thein_1395 Thein_1395 Thein_1395 1467168 1468088 + UBA/THIF-type NAD/FAD binding protein COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2~InterPro IPR000594~KEGG: dba:Dbac_2230 hypothetical protein~PFAM: UBA/THIF-type NAD/FAD binding protein~SPTR: UBA/THIF-type NAD/FAD binding protein%3B~IMG reference gene:2505284710~PFAM: ThiF family gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1395 Thein_1396 Thein_1396 Thein_1396 1468094 1468834 - ApbE family lipoprotein COGs: COG2122 conserved hypothetical protein~InterPro IPR003374:IPR007183~KEGG: dal:Dalk_4001 ApbE family lipoprotein~PFAM: ApbE family lipoprotein~SPTR: ApbE family lipoprotein%3B~IMG reference gene:2505284711~PFAM: ApbE family gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1396 Thein_1397 Thein_1397 Thein_1397 1468873 1469715 + 2-dehydro-3-deoxyphosphooctonate aldolase COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase~InterPro IPR006269:IPR006218~KEGG: dps:DP0765 2-dehydro-3-deoxyphosphooctonate aldolase~PFAM: DAHP synthetase I/KDSA~PRIAM: 3-deoxy-8-phosphooctulonate synthase~SPTR: 3-deoxy-8-phosphooctulonate synthase%3B~TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase~IMG reference gene:2505284712~PFAM: DAHP synthetase I family~TIGRFAM: 3-deoxy-8-phosphooctulonate synthase%3B phospho-2-dehydro-3-deoxyheptonate aldolase gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1397 Thein_1398 Thein_1398 Thein_1398 1469696 1470253 + 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family COGs: COG1778 Low specificity phosphatase (HAD superfamily)~InterPro IPR010023:IPR006549~KEGG: sfu:Sfum_2073 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase~PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase~SPTR: Phosphatase kdsC%3B~TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family%3B hydrolase%2C HAD-superfamily%2C subfamily IIIA~IMG reference gene:2505284713~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1398 Thein_1399 Thein_1399 Thein_1399 1470199 1470795 + protein of unknown function DUF1239 InterPro IPR010664~KEGG: sat:SYN_00948 hypothetical protein~PFAM: protein of unknown function DUF1239~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2505284714~PFAM: Protein of unknown function (DUF1239) gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1399 Thein_1400 Thein_1400 Thein_1400 1470788 1471246 + lipopolysaccharide transport periplasmic protein LptA COGs: COG1934 conserved hypothetical protein~InterPro IPR014340:IPR005653~KEGG: gme:Gmet_1281 OstA-like protein~PFAM: OstA family protein~SPTR: OstA-like protein%3B~TIGRFAM: lipopolysaccharide transport periplasmic protein LptA~IMG reference gene:2505284715~PFAM: OstA-like protein~TIGRFAM: lipopolysaccharide transport periplasmic protein LptA gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1400 Thein_1401 Thein_1401 Thein_1401 1471251 1471979 + ABC transporter related protein COGs: COG1137 ABC-type (unclassified) transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: glo:Glov_2167 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505284716~PFAM: ABC transporter%3B Branched-chain amino acid ATP-binding cassette transporter gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1401 Thein_1402 Thein_1402 Thein_1402 1471984 1473426 + RNA polymerase%2C sigma 54 subunit%2C RpoN COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog~InterPro IPR000394:IPR007046:IPR007634~KEGG: sat:SYN_00945 RNA polymerase sigma-54 factor~PFAM: sigma-54 DNA-binding domain protein%3B sigma-54 factor core-binding region%3B sigma-54 factor~SPTR: RNA polymerase sigma-54 factor%3B~TIGRFAM: RNA polymerase sigma-54 factor%2C RpoN~IMG reference gene:2505284717~PFAM: Sigma-54 factor%2C Activator interacting domain (AID)%3B Sigma-54%2C DNA binding domain%3B Sigma-54 factor%2C core binding domain~TIGRFAM: RNA polymerase sigma-54 factor gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1402 Thein_1403 Thein_1403 Thein_1403 1473436 1473966 + sigma 54 modulation protein/ribosomal protein S30EA COGs: COG1544 Ribosome-associated protein Y (PSrp-1)~InterPro IPR003489~KEGG: dal:Dalk_1360 sigma 54 modulation protein/ribosomal protein S30EA~PFAM: sigma 54 modulation protein/ribosomal protein S30EA~SPTR: Sigma 54 modulation protein/ribosomal protein S30EA%3B~TIGRFAM: ribosomal subunit interface protein~IMG reference gene:2505284718~PFAM: Sigma 54 modulation protein / S30EA ribosomal protein~TIGRFAM: ribosomal subunit interface protein gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1403 Thein_1404 Thein_1404 Thein_1404 1474009 1474467 + putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR002178~KEGG: dat:HRM2_27890 PtsN2~PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2~SPTR: PtsN2%3B~IMG reference gene:2505284719~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1404 Thein_1405 Thein_1405 Thein_1405 1474451 1475341 + hypothetical protein COGs: COG1660 P-loop-containing kinase~InterPro IPR005337~KEGG: dal:Dalk_1358 hypothetical protein~SPTR: UPF0042 nucleotide-binding protein Dalk_1358%3B~IMG reference gene:2505284720~PFAM: P-loop ATPase protein family gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1405 Thein_1406 Thein_1406 Thein_1406 1475343 1475735 + PTS system fructose subfamily IIA component COGs: COG2893 Phosphotransferase system mannose/fructose-specific component IIA~InterPro IPR004701~KEGG: dal:Dalk_1357 PTS system fructose subfamily IIA component~PFAM: PTS system fructose subfamily IIA component~SPTR: PTS system fructose subfamily IIA component%3B~IMG reference gene:2505284721~PFAM: PTS system fructose IIA component~TIGRFAM: PTS system%2C mannose/fructose/sorbose family%2C IIA component gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1406 Thein_1407 Thein_1407 Thein_1407 1475736 1476191 + ribosomal-protein-alanine acetyltransferase COGs: COG0456 Acetyltransferase~InterPro IPR006464:IPR000182~KEGG: tpd:Teth39_1743 ribosomal-protein-alanine acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Ribosomal-protein-alanine acetyltransferase%3B~TIGRFAM: ribosomal-protein-alanine acetyltransferase~IMG reference gene:2505284722~PFAM: Acetyltransferase (GNAT) family~TIGRFAM: ribosomal-protein-alanine acetyltransferase gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1407 Thein_1408 Thein_1408 Thein_1408 1476260 1477264 + glyceraldehyde-3-phosphate dehydrogenase%2C type I COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase~InterProIPR006424:IPR020828:IPR020829:IPR020830:IPR 010916:IPR020832:IPR020831~KEGG: dak:DaAHT2_2095 glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain~PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)~SPTR: Glyceraldehyde-3-phosphate dehydrogenase%2C type I%3B~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I~IMG reference gene:2505284723~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C C-terminal domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C NAD binding domain~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1408 Thein_1409 Thein_1409 Thein_1409 1477304 1481530 + pyruvate phosphate dikinase PEP/pyruvate-binding protein COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase~InterPro IPR002192:IPR008279~KEGG: dak:DaAHT2_2096 pyruvate phosphate dikinase PEP/pyruvate-binding protein~PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding%3B PEP-utilising protein mobile region~SPTR: Pyruvate phosphate dikinase PEP/pyruvate-binding protein%3B~IMG reference gene:2505284724~PFAM: PEP-utilising enzyme%2C mobile domain%3B Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1409 Thein_1410 Thein_1410 Thein_1410 1481636 1482871 + Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase~InterPro IPR020828:IPR020829:IPR020830:IPR020832~KEGG: dol:Dole_0222 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain~PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)~SPTR: Glyceraldehyde-3-phosphate dehydrogenase (Phosphorylating)%3B~manually curated~IMG reference gene:2505284725~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C C-terminal domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C NAD binding domain~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1410 Thein_1411 Thein_1411 Thein_1411 1482883 1484061 + Phosphoglycerate kinase COGs: COG0126 3-phosphoglycerate kinase~InterPro IPR001576:IPR015911~KEGG: dak:DaAHT2_0036 phosphoglycerate kinase~PFAM: phosphoglycerate kinase~PRIAM: Phosphoglycerate kinase~SPTR: Phosphoglycerate kinase%3B~IMG reference gene:2505284726~PFAM: Phosphoglycerate kinase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1411 Thein_1412 Thein_1412 Thein_1412 1484072 1484836 + triosephosphate isomerase COGs: COG0149 Triosephosphate isomerase~InterPro IPR000652:IPR020861~KEGG: gbm:Gbem_2338 triosephosphate isomerase~PFAM: triosephosphate isomerase~PRIAM: Triose-phosphate isomerase~SPTR: Triosephosphate isomerase%3B~TIGRFAM: triosephosphate isomerase~IMG reference gene:2505284727~PFAM: Triosephosphate isomerase~TIGRFAM: triosephosphate isomerase gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1412 Thein_1413 Thein_1413 Thein_1413 1484838 1485188 + preprotein translocase%2C SecG subunit COGs: COG1314 Preprotein translocase subunit SecG~InterPro IPR004692~KEGG: dat:HRM2_27940 SecG~PFAM: Preprotein translocase SecG subunit~SPTR: SecG%3B~TIGRFAM: preprotein translocase%2C SecG subunit~IMG reference gene:2505284728~PFAM: Preprotein translocase SecG subunit~TIGRFAM: protein translocase%2C SecG subunit gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1413 Thein_1414 Thein_1414 Thein_1414 1485482 1486837 - glutamyl-tRNA reductase COGs: COG0373 Glutamyl-tRNA reductase~InterProIPR000343:IPR015895:IPR006151:IPR015896:IPR 018214~KEGG: dal:Dalk_3439 glutamyl-tRNA reductase~PFAM: Shikimate/quinate 5-dehydrogenase%3B Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase-like~SPTR: Glutamyl-tRNA reductase%3B~TIGRFAM: glutamyl-tRNA reductase~IMG reference gene:2505284729~PFAM: Glutamyl-tRNAGlu reductase%2C N-terminal domain%3B Shikimate / quinate 5-dehydrogenase%3B Glutamyl-tRNAGlu reductase%2C dimerisation domain~TIGRFAM: glutamyl-tRNA reductase gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1414 Thein_1415 Thein_1415 Thein_1415 1486827 1487648 - cytochrome c-type biogenesis protein CcsB COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component~InterPro IPR017562:IPR002541~KEGG: gme:Gmet_3232 cytochrome c assembly protein~PFAM: cytochrome c assembly protein~SPTR: Cytochrome c assembly protein%3B~TIGRFAM: cytochrome c-type biogenesis protein CcsB~IMG reference gene:2505284730~PFAM: Cytochrome C assembly protein~TIGRFAM: cytochrome c-type biogenesis protein CcsB gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1415 Thein_1416 Thein_1416 Thein_1416 1487764 1488612 - putative signal transduction protein COGs: COG1639 signal transduction protein~InterPro IPR013976~KEGG: slp:Slip_1776 metal dependent phosphohydrolase~PFAM: Metal-dependent hydrolase HDOD~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284731~PFAM: HDOD domain gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1416 Thein_1417 Thein_1417 Thein_1417 1488612 1489526 - Ion transport 2 domain protein COGs: COG1357 Uncharacterized low-complexity protein~InterPro IPR001646:IPR013099~KEGG: dal:Dalk_3538 ion transport 2 domain protein~PFAM: Ion transport 2 domain protein %3B pentapeptide repeat protein~SPTR: Ion transport 2 domain protein%3B~IMG reference gene:2505284732~PFAM: Pentapeptide repeats (8 copies)%3B Ion channel gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1417 Thein_1418 Thein_1418 Thein_1418 1489708 1490259 + pyruvate/ketoisovalerate oxidoreductase%2C gamma subunit COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit~InterPro IPR011894:IPR019752~KEGG: sat:SYN_00157 pyruvate:ferredoxin oxidoreductase gamma subunit~PFAM: Pyruvate/ketoisovalerate oxidoreductase%2C catalytic domain~SPTR: Pyruvate:ferredoxin oxidoreductase gamma subunit%3B~TIGRFAM: pyruvate/ketoisovalerate oxidoreductase%2C gamma subunit~IMG reference gene:2505284733~PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase~TIGRFAM: 2-oxoacid:acceptor oxidoreductase%2C gamma subunit%2C pyruvate/2-ketoisovalerate family gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1418 Thein_1419 Thein_1419 Thein_1419 1490270 1490566 + pyruvate ferredoxin/flavodoxin oxidoreductase%2C delta subunit COGs: COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase delta subunit~InterPro IPR011898:IPR017900:IPR017896~KEGG: sfu:Sfum_2793 pyruvate ferredoxin/flavodoxin oxidoreductase%2C delta subunit~SPTR: Pyruvate ferredoxin oxidoreductase%2C delta subunit%3B~TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase%2C delta subunit~IMG reference gene:2505284734~TIGRFAM: 2-oxoacid:acceptor oxidoreductase%2C delta subunit%2C pyruvate/2-ketoisovalerate family gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1419 Thein_1420 Thein_1420 Thein_1420 1490570 1491748 + pyruvate flavodoxin/ferredoxin oxidoreductase domain protein COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit~InterPro IPR002880~KEGG: sat:SYN_00155 pyruvate:ferredoxin oxidoreductase alpha subunit~PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein~SPTR: Pyruvate:ferredoxin oxidoreductase alpha subunit%3B~IMG reference gene:2505284735~PFAM: domain gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1420 Thein_1421 Thein_1421 Thein_1421 1491745 1492683 + thiamine pyrophosphate TPP-binding domain-containing protein COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit~InterPro IPR011766~KEGG: sfu:Sfum_2795 thiamine pyrophosphate binding domain-containing protein~PFAM: thiamine pyrophosphate TPP-binding domain-containing protein~SPTR: Pyruvate ferredoxin oxidoreductase%2C beta subunit%3B~IMG reference gene:2505284736~PFAM: Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1421 Thein_1422 Thein_1422 Thein_1422 1492988 1494892 + carbon-monoxide dehydrogenase%2C catalytic subunit COGs: COG1151 6Fe-6S prismane cluster-containing protein~InterPro IPR010047:IPR004137~KEGG: pca:Pcar_0057 carbon-monoxide dehydrogenase%2C catalytic subunit~PFAM: Prismane~PRIAM: Carbon-monoxide dehydrogenase (acceptor)~SPTR: Carbon-monoxide dehydrogenase%2C catalytic subunit%3B~TIGRFAM: carbon-monoxide dehydrogenase%2C catalytic subunit~IMG reference gene:2505284738~PFAM: Prismane/CO dehydrogenase family~TIGRFAM: carbon-monoxide dehydrogenase%2C catalytic subunit gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1422 Thein_1423 Thein_1423 Thein_1423 1494947 1495636 + response regulator receiver protein COGs: COG3279 Response regulator of the LytR/AlgR family~InterPro IPR007492~KEGG: pca:Pcar_0056 response regulator~PFAM: LytTr DNA-binding region~SPTR: Response regulator of the LytR/AlgR family%3B~IMG reference gene:2505284739~PFAM: LytTr DNA-binding domain gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1423 Thein_1424 Thein_1424 Thein_1424 1495937 1498333 + ATP-dependent protease La COGs: COG0466 ATP-dependent Lon protease~InterProIPR004815:IPR003111:IPR003593:IPR003959:IPR 008268:IPR001984~KEGG: dth:DICTH_1451 ATP-dependent protease La~PFAM: AAA ATPase central domain protein%3B peptidase S16 lon domain protein~PRIAM: Endopeptidase La~SMART: peptidase S16 lon domain protein%3B AAA ATPase~SPTR: Lon protease%3B~TIGRFAM: ATP-dependent protease La~IMG reference gene:2505284741~PFAM: ATP-dependent protease La (LON) domain%3B ATPase family associated with various cellular activities (AAA)%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: ATP-dependent protease La gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1424 Thein_1425 Thein_1425 Thein_1425 1498330 1499112 + Ku protein COGs: COG1273 conserved hypothetical protein~InterPro IPR009187:IPR006164~KEGG: sth:STH1798 hypothetical protein~PFAM: Ku domain protein~SMART: Ku domain protein~SPTR: Probable DNA repair protein STH1798%3B~TIGRFAM: Ku protein~IMG reference gene:2505284742~PFAM: Ku70/Ku80 beta-barrel domain~TIGRFAM: Ku protein%2C prokaryotic gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1425 Thein_1426 Thein_1426 Thein_1426 1499112 1500020 + DNA polymerase LigD%2C ligase domain protein COGs: COG1793 ATP-dependent DNA ligase~InterPro IPR014146:IPR012310:IPR012309:IPR016059~KEGG: mta:Moth_1488 ATP dependent DNA ligase%2C central~PFAM: ATP dependent DNA ligase%3B ATP dependent DNA ligase domain protein~SPTR: ATP dependent DNA ligase%2C central%3B~TIGRFAM: DNA polymerase LigD%2C ligase domain protein~IMG reference gene:2505284743~PFAM: ATP dependent DNA ligase domain%3B ATP dependent DNA ligase C terminal region~TIGRFAM: DNA polymerase LigD%2C ligase domain gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1426 Thein_1427 Thein_1427 Thein_1427 1500015 1500944 - malate dehydrogenase%2C NAD-dependent COGs: COG0039 Malate/lactate dehydrogenase~InterPro IPR011275:IPR001236:IPR001557~KEGG: dak:DaAHT2_0941 malate dehydrogenase%2C NAD-dependent~PFAM: Lactate/malate dehydrogenase~SPTR: Malate dehydrogenase%2C NAD-dependent%3B~TIGRFAM: malate dehydrogenase%2C NAD-dependent~IMG reference gene:2505284744~PFAM: lactate/malate dehydrogenase%2C alpha/beta C-terminal domain%3B lactate/malate dehydrogenase%2C NAD binding domain~TIGRFAM: malate dehydrogenase%2C NAD-dependent gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1427 Thein_1428 Thein_1428 Thein_1428 1500957 1501367 - hypothetical protein InterPro IPR015011~KEGG: sfu:Sfum_0182 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284745~PFAM: Archaea-specific editing domain of threonyl-tRNA synthetase gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1428 Thein_1429 Thein_1429 Thein_1429 1501513 1501746 - redox-active disulfide protein 2 InterPro IPR005243~KEGG: rsq:Rsph17025_1409 hypothetical protein~SPTR: Redox-active disulfide protein 2%3B~TIGRFAM: redox-active disulfide protein 2~IMG reference gene:2505284747~TIGRFAM: small redox-active disulfide protein 2 gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1429 Thein_1430 Thein_1430 Thein_1430 1501757 1503038 - pseudogene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1430 Thein_1431 Thein_1431 Thein_1431 1503040 1503378 - regulatory protein ArsR InterPro IPR001845:IPR001808~KEGG: gct:GC56T3_3243 transcriptional regulator%2C ArsR family~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR%3B regulatory protein Crp~SPTR: Transcriptional regulator (ArsR family)%3B~IMG reference gene:2505284749~PFAM: Bacterial regulatory protein%2C arsR family gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1431 Thein_1432 Thein_1432 Thein_1432 1503551 1504159 - hypothetical protein KEGG: oan:Oant_3315 L-2-amino-thiazoline-4-carboxylic acid hydrolase~SPTR: L-2-amino-thiazoline-4-carboxylic acid hydrolase%3B~IMG reference gene:2505284750 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1432 Thein_1433 Thein_1433 Thein_1433 1504390 1504890 - Adenosylcobinamide-phosphateguanylyltransferase COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase~InterPro IPR003203~KEGG: ddf:DEFDS_2051 adenosylcobinamide-phosphate guanylyltransferase~PFAM: cobalbumin biosynthesis protein~PRIAM: Adenosylcobinamide-phosphate guanylyltransferase~SPTR: Adenosylcobinamide-phosphate guanylyltransferase%3B~IMG reference gene:2505284751~PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1433 Thein_1434 Thein_1434 Thein_1434 1504927 1506804 - ferredoxin COGs: COG3894 Uncharacterized metal-binding protein~InterPro IPR001041~KEGG: dak:DaAHT2_1982 ferredoxin~PFAM: ferredoxin~SPTR: Ferredoxin%3B~IMG reference gene:2505284752~PFAM: 2Fe-2S iron-sulfur cluster binding domain gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1434 Thein_1435 Thein_1435 Thein_1435 1506814 1507710 - dihydropteroate synthase DHPS COGs: COG1410 Methionine synthase I cobalamin-binding domain~InterPro IPR000489~KEGG: dak:DaAHT2_1991 dihydropteroate synthase DhpS~PFAM: dihydropteroate synthase DHPS~SPTR: Dihydropteroate synthase DHPS%3B~IMG reference gene:2505284753~PFAM: Pterin binding enzyme gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1435 Thein_1436 Thein_1436 Thein_1436 1508136 1508978 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284754~PFAM: Transposase IS200 like gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1436 Thein_1437 Thein_1437 Thein_1437 1509010 1510020 - permease COGs: COG0701 permease~InterPro IPR005524~KEGG: pru:PRU_1127 putative permease~PFAM: permease~SPTR: Putative permease%3B~IMG reference gene:2505284755~PFAM: Predicted permease gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1437 Thein_1438 Thein_1438 Thein_1438 1510291 1510410 + hypothetical protein KEGG: dvm:DvMF_2257 methyl-accepting chemotaxis sensory transducer~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2505284756 gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1438 Thein_1439 Thein_1439 Thein_1439 1510441 1512198 + pseudogene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1439 Thein_1440 Thein_1440 Thein_1440 1512373 1513452 - nitroreductase InterPro IPR000415~KEGG: dat:HRM2_20180 hypothetical protein~PFAM: nitroreductase~SPTR: Putative dinucleotide-utilizing biosynthesis family protein (Molybdopterin and thiamine biosynthesis family protein)%3B~IMG reference gene:2505284758~PFAM: Nitroreductase family gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1440 Thein_1441 Thein_1441 Thein_1441 1514080 1514976 + protein of unknown function DUF1555 InterPro IPR013424:IPR011449~KEGG: tbd:Tbd_0194 hypothetical protein~PFAM: protein of unknown function DUF1555~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284759~PFAM: PEP-CTERM motif~TIGRFAM: PEP-CTERM putative exosortase interaction domain gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1441 Thein_1442 Thein_1442 Thein_1442 1514973 1516526 - Radical SAM domain protein COGs: COG1032 Fe-S oxidoreductase~InterPro IPR006638:IPR006158:IPR007197~KEGG: gbm:Gbem_1024 Radical SAM domain protein~PFAM: Radical SAM domain protein%3B cobalamin B12-binding domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284760~PFAM: Radical SAM superfamily%3B B12 binding domain gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1442 Thein_1443 Thein_1443 Thein_1443 1517004 1517762 + pseudogene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1443 Thein_1444 Thein_1444 Thein_1444 1517999 1519141 - hypothetical protein KEGG: dba:Dbac_2228 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284762 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1444 Thein_1445 Thein_1445 Thein_1445 1519289 1520017 + Creatininase COGs: COG1402 Uncharacterized protein putative amidase~InterPro IPR003785~KEGG: sfu:Sfum_0661 creatininase~PFAM: Creatininase~SPTR: Creatininase%3B~IMG reference gene:2505284763~PFAM: Creatinine amidohydrolase gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1445 Thein_1446 Thein_1446 Thein_1446 1520014 1520505 + Redoxin domain protein InterPro IPR013740:IPR017937:IPR017936~KEGG: dps:DP3083 cytochrome c biogenesis protein (TlpA)~PFAM: Redoxin domain protein~SPTR: Related to cytochrome c biogenesis protein (TlpA)%3B~IMG reference gene:2505284764~PFAM: Redoxin gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1446 Thein_1447 Thein_1447 Thein_1447 1520502 1521539 - selenide%2C water dikinase COGs: COG0709 Selenophosphate synthase~InterPro IPR004536:IPR000728:IPR010918~KEGG: adg:Adeg_0304 selenide%2C water dikinase~PFAM: AIR synthase related protein%3B AIR synthase related protein domain protein~SPTR: Selenide%2C water dikinase%3B~TIGRFAM: selenide%2C water dikinase~manually curated~selenocysteine-containing protein~IMG reference gene:2505284765~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: selenium donor protein gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1447 Thein_1448 Thein_1448 Thein_1448 1521628 1524042 + PAS/PAC sensor hybrid histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR000014:IPR003661:IPR003594:IPR001789:IPR 004358:IPR005467~KEGG: dat:HRM2_39140 two domain fusion protein (N:methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator)~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS domain containing protein%3B response regulator receiver~SPTR: Two domain fusion protein (N:Methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator)%3B~IMG reference gene:2505284766~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1448 Thein_1449 Thein_1449 Thein_1449 1524023 1524391 - regulatory protein%2C FmdB family InterPro IPR013429~KEGG: alv:Alvin_0718 regulatory protein%2C FmdB family~PFAM: Putative regulatory protein FmdB~SPTR: Regulatory protein%2C FmdB family%3B~TIGRFAM: regulatory protein%2C FmdB family~IMG reference gene:2505284767~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1449 Thein_1450 Thein_1450 Thein_1450 1524439 1525230 + Fe-S cluster domain protein InterPro IPR007202~KEGG: dak:DaAHT2_0716 Fe-S cluster domain protein~PFAM: Fe-S cluster domain protein~SPTR: Putative Fe-S cluster%3B~IMG reference gene:2505284768~PFAM: Putative Fe-S cluster gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1450 Thein_1451 Thein_1451 Thein_1451 1525231 1528740 + reverse gyrase COGs: COG1110 Reverse gyrase~InterProIPR005736:IPR014001:IPR006154:IPR003601:IPR 003602:IPR011545:IPR006171:IPR013497:IPR000380:IPR014021~KEGG: aae:aq_1159 reverse gyrase~PFAM: DNA topoisomerase type IA central domain protein%3B TOPRIM domain-containing protein%3B DEAD/DEAH box helicase domain protein~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase I DNA-binding%3B DNA topoisomerase I ATP-binding%3B Toprim sub domain-containing protein%3B DEAD-like helicase~SPTR: Reverse gyrase%3B~TIGRFAM: reverse gyrase~IMG reference gene:2505284769~PFAM: Toprim domain%3B DEAD/DEAH box helicase%3B DNA topoisomerase~TIGRFAM: reverse gyrase gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1451 Thein_1452 Thein_1452 Thein_1452 1528977 1529585 - response regulator receiver and ANTAR domain protein COGs: COG3707 Response regulator with putative antiterminator output domain~InterPro IPR001789:IPR005561:IPR008327~KEGG: rca:Rcas_3118 response regulator receiver/ANTAR domain-containing protein~PFAM: response regulator receiver%3B ANTAR domain protein~SMART: response regulator receiver~SPTR: Response regulator receiver and ANTAR domain protein%3B~IMG reference gene:2505284770~PFAM: Response regulator receiver domain%3B ANTAR domain gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1452 Thein_1453 Thein_1453 Thein_1453 1529747 1530598 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284771 gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1453 Thein_1454 Thein_1454 Thein_1454 1530750 1531592 + glycyl-tRNA synthetase%2C alpha subunit COGs: COG0752 Glycyl-tRNA synthetase alpha subunit~InterPro IPR002310:IPR006194~KEGG: sat:SYN_01536 glycyl-tRNA synthetase subunit alpha~PFAM: glycyl-tRNA synthetase alpha subunit~PRIAM: Glycine--tRNA ligase~SPTR: Glycyl-tRNA synthetase alpha subunit%3B~TIGRFAM: glycyl-tRNA synthetase%2C alpha subunit~IMG reference gene:2505284772~PFAM: Glycyl-tRNA synthetase alpha subunit~TIGRFAM: glycyl-tRNA synthetase%2C tetrameric type%2C alpha subunit gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1454 Thein_1455 Thein_1455 Thein_1455 1531603 1533681 + glycyl-tRNA synthetase%2C beta subunit COGs: COG0751 Glycyl-tRNA synthetase beta subunit~InterPro IPR015944:IPR002311:IPR008909:IPR006194~KEGG: sat:SYN_01537 glycyl-tRNA synthetase subunit beta~PFAM: glycyl-tRNA synthetase beta subunit%3B DALR anticodon binding domain protein~PRIAM: Glycine--tRNA ligase~SPTR: Glycyl-tRNA synthetase beta subunit%3B~TIGRFAM: glycyl-tRNA synthetase%2C beta subunit~IMG reference gene:2505284773~PFAM: Glycyl-tRNA synthetase beta subunit%3B DALR anticodon binding domain~TIGRFAM: glycyl-tRNA synthetase%2C tetrameric type%2C beta subunit gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1455 Thein_1456 Thein_1456 Thein_1456 1533652 1534107 - hypothetical protein KEGG: tva:TVAG_315830 Adenylate and Guanylate cyclase catalytic domain containing protein~SPTR: Arf guanyl-nucleotide exchange factor%3B~IMG reference gene:2505284774 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1456 Thein_1457 Thein_1457 Thein_1457 1534300 1535117 + pseudogene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1457 Thein_1458 Thein_1458 Thein_1458 1535297 1535668 + ribosomal protein S12 COGs: COG0048 Ribosomal protein S12~InterPro IPR005679:IPR006032~KEGG: saf:SULAZ_1761 ribosomal protein S12~PFAM: ribosomal protein S12/S23~SPTR: 30S ribosomal protein S12%3B~TIGRFAM: ribosomal protein S12~IMG reference gene:2505284776~PFAM: Ribosomal protein S12~TIGRFAM: ribosomal protein S12%2C bacterial/organelle gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1458 Thein_1459 Thein_1459 Thein_1459 1535683 1536156 + ribosomal protein S7 COGs: COG0049 Ribosomal protein S7~InterPro IPR005717:IPR000235:IPR020606~KEGG: dsa:Desal_1182 ribosomal protein S7~PFAM: ribosomal protein S7~SPTR: 30S ribosomal protein S7%3B~TIGRFAM: ribosomal protein S7~IMG reference gene:2505284777~PFAM: Ribosomal protein S7p/S5e~TIGRFAM: ribosomal protein S7%2C bacterial/organelle gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1459 Thein_1460 Thein_1460 Thein_1460 1536267 1538354 + translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR004540:IPR005225:IPR000795:IPR004161:IPR 005517:IPR000640~KEGG: mta:Moth_2463 elongation factor G~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV%3B elongation factor G domain-containing protein~SPTR: Elongation factor G%3B~TIGRFAM: translation elongation factor G%3B small GTP-binding protein~IMG reference gene:2505284778~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1460 Thein_1461 Thein_1461 Thein_1461 1538368 1539567 + translation elongation factor Tu COGs: COG0050 GTPase - translation elongation factors~InterProIPR004541:IPR005225:IPR000795:IPR004161:IPR 004160~KEGG: ddf:DEFDS_1787 translation elongation factor Tu~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor Tu domain-containing protein~SPTR: Elongation factor Tu%3B~TIGRFAM: translation elongation factor Tu%3B small GTP-binding protein~IMG reference gene:2505284779~PFAM: Elongation factor Tu domain 2%3B Elongation factor Tu C-terminal domain%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation elongation factor TU gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1461 Thein_1462 Thein_1462 Thein_1462 1539592 1539906 + ribosomal protein S10 COGs: COG0051 Ribosomal protein S10~InterPro IPR005731:IPR001848:IPR018268~KEGG: bba:Bd2978 30S ribosomal protein S10~PFAM: ribosomal protein S10~SPTR: 30S ribosomal protein S10%3B~TIGRFAM: ribosomal protein S10~IMG reference gene:2505284780~PFAM: Ribosomal protein S10p/S20e~TIGRFAM: ribosomal protein S10%2C bacterial/organelle gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1462 Thein_1463 Thein_1463 Thein_1463 1539925 1540560 + 50S ribosomal protein L3 COGs: COG0087 Ribosomal protein L3~InterPro IPR019927:IPR000597~KEGG: dps:DP1124 50S ribosomal protein L3~PFAM: ribosomal protein L3~SPTR: 50S ribosomal protein L3%3B~TIGRFAM: 50S ribosomal protein L3~IMG reference gene:2505284781~PFAM: Ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3%2C bacterial gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1463 Thein_1464 Thein_1464 Thein_1464 1540574 1541197 + ribosomal protein L4/L1e COGs: COG0088 Ribosomal protein L4~InterPro IPR002136~KEGG: tmt:Tmath_1932 ribosomal protein L4/L1e~PFAM: ribosomal protein L4/L1e~SPTR: 50S ribosomal protein L4%3B~IMG reference gene:2505284782~PFAM: Ribosomal protein L4/L1 family~TIGRFAM: 50S ribosomal protein L4%2C bacterial/organelle gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1464 Thein_1465 Thein_1465 Thein_1465 1541194 1541484 + Ribosomal protein L25/L23 COGs: COG0089 Ribosomal protein L23~InterPro IPR013025:IPR001014~KEGG: hor:Hore_01190 ribosomal protein L25/L23~PFAM: Ribosomal protein L25/L23~SPTR: Ribosomal protein L25/L23%3B~IMG reference gene:2505284783~PFAM: Ribosomal protein L23 gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1465 Thein_1466 Thein_1466 Thein_1466 1541496 1542323 + ribosomal protein L2 COGs: COG0090 Ribosomal protein L2~InterPro IPR005880:IPR002171~KEGG: hor:Hore_01200 50S ribosomal protein L2~PFAM: ribosomal protein L2~SPTR: 50S ribosomal protein L2%3B~TIGRFAM: ribosomal protein L2~IMG reference gene:2505284784~PFAM: Ribosomal Proteins L2%2C RNA binding domain%3B Ribosomal Proteins L2%2C C-terminal domain~TIGRFAM: ribosomal protein L2%2C bacterial/organellar gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1466 Thein_1467 Thein_1467 Thein_1467 1542336 1542623 + ribosomal protein S19 COGs: COG0185 Ribosomal protein S19~InterPro IPR005732:IPR002222:IPR020934~KEGG: ddf:DEFDS_1768 30S ribosomal protein S19~PFAM: ribosomal protein S19/S15~SPTR: 30S ribosomal protein S19%3B~TIGRFAM: ribosomal protein S19~IMG reference gene:2505284785~PFAM: Ribosomal protein S19~TIGRFAM: ribosomal protein S19%2C bacterial/organelle gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1467 Thein_1468 Thein_1468 Thein_1468 1542633 1542974 + ribosomal protein L22 COGs: COG0091 Ribosomal protein L22~InterPro IPR005727:IPR001063:IPR018260~KEGG: adg:Adeg_1519 ribosomal protein L22~PFAM: ribosomal protein L22/L17~SPTR: 50S ribosomal protein L22%3B~TIGRFAM: ribosomal protein L22~IMG reference gene:2505284786~PFAM: Ribosomal protein L22p/L17e~TIGRFAM: ribosomal protein L22%2C bacterial type gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1468 Thein_1469 Thein_1469 Thein_1469 1542990 1543649 + ribosomal protein S3 COGs: COG0092 Ribosomal protein S3~InterProIPR005704:IPR004087:IPR008282:IPR004044:IPR 001351:IPR018280~KEGG: gsu:GSU2851 30S ribosomal protein S3~PFAM: ribosomal protein S3- domain protein%3B Ribosomal protein S3 domain%3B KH type 2 domain protein~SMART: KH domain protein~SPTR: SSU ribosomal protein S3p (S3e)%3B~TIGRFAM: ribosomal protein S3~IMG reference gene:2505284787~PFAM: KH domain%3B Ribosomal protein S3%2C C-terminal domain%3B Ribosomal protein S3%2C N-terminal domain~TIGRFAM: ribosomal protein S3%2C bacterial type gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1469 Thein_1470 Thein_1470 Thein_1470 1543663 1544082 + ribosomal protein L16 COGs: COG0197 Ribosomal protein L16/L10E~InterPro IPR000114:IPR016180:IPR020798~KEGG: csc:Csac_2280 50S ribosomal protein L16~PFAM: Ribosomal protein L10e/L16~SPTR: 50S ribosomal protein L16%3B~TIGRFAM: ribosomal protein L16~IMG reference gene:2505284788~PFAM: Ribosomal protein L16p/L10e~TIGRFAM: ribosomal protein L16%2C bacterial/organelle gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1470 Thein_1471 Thein_1471 Thein_1471 1544079 1544282 + ribosomal protein L29 InterPro IPR001854:IPR018254~KEGG: bts:Btus_0161 ribosomal protein L29~PFAM: ribosomal protein L29~SPTR: Ribosomal protein L29%3B~TIGRFAM: ribosomal protein L29~IMG reference gene:2505284789~PFAM: Ribosomal L29 protein~TIGRFAM: ribosomal protein L29 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1471 Thein_1472 Thein_1472 Thein_1472 1544299 1544604 + 30S ribosomal protein S17 COGs: COG0186 Ribosomal protein S17~InterPro IPR019984:IPR000266:IPR019979~KEGG: tna:CTN_1002 30S ribosomal protein S17~PFAM: ribosomal protein S17~SPTR: 30S ribosomal protein S17%3B~TIGRFAM: 30S ribosomal protein S17~IMG reference gene:2505284790~PFAM: Ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17 gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1472 Thein_1473 Thein_1473 Thein_1473 1544623 1544991 + ribosomal protein L14 COGs: COG0093 Ribosomal protein L14~InterPro IPR005745:IPR000218:IPR019972~KEGG: pca:Pcar_0711 50S ribosomal protein L14~PFAM: ribosomal protein L14b/L23e~SPTR: 50S ribosomal protein L14%3B~TIGRFAM: ribosomal protein L14~IMG reference gene:2505284791~PFAM: Ribosomal protein L14p/L23e~TIGRFAM: ribosomal protein L14%2C bacterial/organelle gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1473 Thein_1474 Thein_1474 Thein_1474 1545003 1545374 + ribosomal protein L24 COGs: COG0198 Ribosomal protein L24~InterPro IPR003256:IPR005824:IPR005825~KEGG: pth:PTH_0331 50S ribosomal protein L24~PFAM: KOW domain protein~SMART: KOW domain protein~SPTR: 50S ribosomal protein L24%3B~TIGRFAM: ribosomal protein L24~IMG reference gene:2505284792~PFAM: KOW motif~TIGRFAM: ribosomal protein L24%2C bacterial/organelle gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1474 Thein_1475 Thein_1475 Thein_1475 1545382 1545927 + 50S ribosomal protein L5 COGs: COG0094 Ribosomal protein L5~InterPro IPR002132~KEGG: dol:Dole_0720 50S ribosomal protein L5~SPTR: 50S ribosomal protein L5%3B~IMG reference gene:2505284793~PFAM: ribosomal L5P family C-terminus%3B Ribosomal protein L5 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1475 Thein_1476 Thein_1476 Thein_1476 1545936 1546121 + ribosomal protein S14 COGs: COG0199 Ribosomal protein S14~InterPro IPR001209:IPR018271~KEGG: chy:CHY_2296 30S ribosomal protein S14~PFAM: ribosomal protein S14~SPTR: 30S ribosomal protein S14 type Z%3B~IMG reference gene:2505284794~PFAM: Ribosomal protein S14p/S29e gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1476 Thein_1477 Thein_1477 Thein_1477 1546135 1546530 + ribosomal protein S8 COGs: COG0096 Ribosomal protein S8~InterPro IPR000630~KEGG: aac:Aaci_2697 ribosomal protein S8~PFAM: ribosomal protein S8~SPTR: Ribosomal protein S8%3B~IMG reference gene:2505284795~PFAM: Ribosomal protein S8 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1477 Thein_1478 Thein_1478 Thein_1478 1546548 1547117 + ribosomal protein L6 COGs: COG0097 Ribosomal protein L6P/L9E~InterPro IPR019906:IPR020040:IPR002358:IPR000702~KEGG: ddf:DEFDS_1757 50S ribosomal protein L6~PFAM: Ribosomal protein L6%2C alpha-beta domain~SPTR: 50S ribosomal protein L6%3B~TIGRFAM: ribosomal protein L6~IMG reference gene:2505284796~PFAM: Ribosomal protein L6~TIGRFAM: ribosomal protein L6%2C bacterial type gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1478 Thein_1479 Thein_1479 Thein_1479 1547136 1547516 + ribosomal protein L18 COGs: COG0256 Ribosomal protein L18~InterPro IPR004389:IPR005484~KEGG: tnp:Tnap_1325 ribosomal protein L18~PFAM: ribosomal protein L18P/L5E~SPTR: 50S ribosomal protein L18%3B~TIGRFAM: ribosomal protein L18~IMG reference gene:2505284797~PFAM: Ribosomal L18p/L5e family~TIGRFAM: ribosomal protein L18%2C bacterial type gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1479 Thein_1480 Thein_1480 Thein_1480 1547536 1548057 + ribosomal protein S5 COGs: COG0098 Ribosomal protein S5~InterPro IPR005712:IPR013810:IPR005324:IPR018192~KEGG: pth:PTH_0336 30S ribosomal protein S5~PFAM: Ribosomal protein S5 %3B ribosomal protein S5 domain protein~SPTR: 30S ribosomal protein S5%3B~TIGRFAM: ribosomal protein S5~IMG reference gene:2505284798~PFAM: Ribosomal protein S5%2C N-terminal domain%3B Ribosomal protein S5%2C C-terminal domain~TIGRFAM: ribosomal protein S5%2C bacterial/organelle type gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1480 Thein_1481 Thein_1481 Thein_1481 1548041 1548229 + ribosomal protein L30 COGs: COG1841 Ribosomal protein L30/L7E~InterPro IPR005996:IPR000517:IPR018038~KEGG: mcu:HMPREF0573_10320 50S ribosomal protein L30~PFAM: ribosomal protein L30~SPTR: 50S ribosomal protein l30%3B~TIGRFAM: ribosomal protein L30~IMG reference gene:2505284799~PFAM: Ribosomal protein L30p/L7e~TIGRFAM: ribosomal protein L30%2C bacterial/organelle gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1481 Thein_1482 Thein_1482 Thein_1482 1548222 1548683 + ribosomal protein L15 COGs: COG0200 Ribosomal protein L15~InterPro IPR005749:IPR001196~KEGG: sth:STH3056 50S ribosomal protein L15~SPTR: 50S ribosomal protein L15%3B~TIGRFAM: ribosomal protein L15~IMG reference gene:2505284800~PFAM: Ribosomal protein L18e/L15~TIGRFAM: ribosomal protein L15%2C bacterial/organelle gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1482 Thein_1483 Thein_1483 Thein_1483 1548694 1550010 + preprotein translocase%2C SecY subunit COGs: COG0201 Preprotein translocase subunit SecY~InterPro IPR002208~KEGG: dma:DMR_12400 preprotein translocase subunit SecY~PFAM: SecY protein~SPTR: Preprotein translocase subunit secY%3B~TIGRFAM: preprotein translocase%2C SecY subunit~IMG reference gene:2505284801~PFAM: eubacterial secY protein~TIGRFAM: preprotein translocase%2C SecY subunit gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1483 Thein_1484 Thein_1484 Thein_1484 1550030 1550674 + adenylate kinase COGs: COG0563 Adenylate kinase and related kinase~InterPro IPR006259:IPR000850:IPR007862~KEGG: apo:Arcpr_1334 adenylate kinase~PFAM: adenylate kinase%3B adenylate kinase lid domain-containing protein~SPTR: Adenylate kinase%3B~TIGRFAM: adenylate kinase~IMG reference gene:2505284802~PFAM: Adenylate kinase%2C active site lid%3B Adenylate kinase~TIGRFAM: adenylate kinases gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1484 Thein_1485 Thein_1485 Thein_1485 1550695 1551468 + methionine aminopeptidase%2C type I COGs: COG0024 Methionine aminopeptidase~InterPro IPR002467:IPR000994:IPR001714~KEGG: sfu:Sfum_1577 methionine aminopeptidase%2C type I~PFAM: peptidase M24~SPTR: Methionine aminopeptidase%3B~TIGRFAM: methionine aminopeptidase%2C type I~manually curated~IMG reference gene:2505284803~PFAM: Metallopeptidase family M24~TIGRFAM: methionine aminopeptidase%2C type I gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1485 Thein_1486 Thein_1486 Thein_1486 1551478 1551717 + translation initiation factor IF-1 COGs: COG0361 Translation initiation factor 1 (IF-1)~InterPro IPR004368:IPR006196~KEGG: dps:DP1147 translation initiation factor IF-1~PFAM: S1 IF1 family protein~SPTR: Translation initiation factor IF-1%3B~TIGRFAM: translation initiation factor IF-1~IMG reference gene:2505284804~PFAM: Translation initiation factor 1A / IF-1~TIGRFAM: eukaryotic/archaeal initiation factor 1A%3B translation initiation factor IF-1 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1486 Thein_1487 Thein_1487 Thein_1487 1551858 1552232 + 30S ribosomal protein S13 COGs: COG0099 Ribosomal protein S13~InterPro IPR019980:IPR001892:IPR018269~KEGG: sfu:Sfum_1579 30S ribosomal protein S13~PFAM: ribosomal protein S13~SPTR: 30S ribosomal protein S13%3B~TIGRFAM: 30S ribosomal protein S13~IMG reference gene:2505284805~PFAM: Ribosomal protein S13/S18~TIGRFAM: 30S ribosomal protein S13 gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1487 Thein_1488 Thein_1488 Thein_1488 1552246 1552638 + 30S ribosomal protein S11 COGs: COG0100 Ribosomal protein S11~InterPro IPR019981:IPR001971:IPR018102~KEGG: tte:TTE2265 30S ribosomal protein S11~PFAM: ribosomal protein S11~SPTR: 30S ribosomal protein S11%3B~TIGRFAM: 30S ribosomal protein S11~IMG reference gene:2505284806~PFAM: Ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1488 Thein_1489 Thein_1489 Thein_1489 1552667 1553299 + ribosomal protein S4 COGs: COG0522 Ribosomal protein S4 and related protein~InterPro IPR005709:IPR002942:IPR001912:IPR018079~KEGG: gem:GM21_3302 30S ribosomal protein S4~PFAM: ribosomal protein S4%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: 30S ribosomal protein S4%3B~TIGRFAM: ribosomal protein S4~IMG reference gene:2505284807~PFAM: Ribosomal protein S4/S9 N-terminal domain%3B S4 domain~TIGRFAM: ribosomal protein S4%2C bacterial/organelle type gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1489 Thein_1490 Thein_1490 Thein_1490 1553328 1554341 + DNA-directed RNA polymerase%2C alpha subunit COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit~InterProIPR011773:IPR011263:IPR011261:IPR011262:IPR 011260~KEGG: sfu:Sfum_1582 DNA-directed RNA polymerase subunit alpha~PFAM: RNA polymerase insert%3B RNA polymerase dimerisation%3B RNA polymerase alpha subunit domain protein~SMART: RNA polymerase RpoA/D/Rpb3-type~SPTR: DNA-directed RNA polymerase subunit alpha%3B~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~IMG reference gene:2505284808~PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain%3B RNA polymerase Rpb3/RpoA insert domain%3B Bacterial RNA polymerase%2C alpha chain C terminal domain~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit%2C bacterial and chloroplast-type gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1490 Thein_1491 Thein_1491 Thein_1491 1554359 1555027 + ribosomal protein L17 COGs: COG0203 Ribosomal protein L17~InterPro IPR000456~KEGG: dol:Dole_0734 50S ribosomal protein L17~PFAM: ribosomal protein L17~SPTR: 50S ribosomal protein L17%3B~TIGRFAM: ribosomal protein L17~IMG reference gene:2505284809~PFAM: Ribosomal protein L17~TIGRFAM: ribosomal protein L17 gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1491 Thein_1492 Thein_1492 Thein_1492 1555095 1556156 - metallophosphoesterase COGs: COG1409 phosphohydrolase~InterPro IPR004843~KEGG: mar:MAE_46320 metallophosphoesterase~PFAM: metallophosphoesterase~SPTR: Metallophosphoesterase%3B~IMG reference gene:2505284810~PFAM: Calcineurin-like phosphoesterase gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1492 Thein_1493 Thein_1493 Thein_1493 1556311 1557606 + AAA ATPase central domain protein COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase~InterPro IPR003593:IPR003959~KEGG: tte:TTE1784 recombination factor protein RarA~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase~SPTR: Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase%3B~IMG reference gene:2505284811~PFAM: MgsA AAA+ ATPase C terminal%3B Holliday junction DNA helicase ruvB N-terminus gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1493 Thein_1494 Thein_1494 Thein_1494 1557674 1558876 + pyridoxal phosphate biosynthetic protein PdxJ COGs: COG0854 Pyridoxal phosphate biosynthesis protein~InterPro IPR002036:IPR004569:IPR020549~KEGG: dak:DaAHT2_0453 pyridoxal phosphate biosynthetic protein PdxJ~PFAM: Pyridoxal phosphate biosynthetic protein PdxJ%3B protein of unknown function UPF0054~PRIAM: Pyridoxine 5'-phosphate synthase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ~IMG reference gene:2505284812~PFAM: Pyridoxal phosphate biosynthesis protein PdxJ%3B Uncharacterized protein family UPF0054~TIGRFAM: metalloprotein%2C YbeY/UPF0054 family%3B pyridoxine 5'-phosphate synthase gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1494 Thein_1495 Thein_1495 Thein_1495 1558873 1559091 - hypothetical protein KEGG: drt:Dret_2466 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284813 gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1495 Thein_1496 Thein_1496 Thein_1496 1559435 1560649 + ammonium transporter COGs: COG0004 Ammonia permease~InterPro IPR001905:IPR018047~KEGG: drt:Dret_2267 ammonium transporter~PFAM: ammonium transporter~SPTR: Ammonium transporter%3B~TIGRFAM: ammonium transporter~IMG reference gene:2505284814~PFAM: Ammonium Transporter Family~TIGRFAM: ammonium transporter gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1496 Thein_1497 Thein_1497 Thein_1497 1561014 1562204 + integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR002104~KEGG: dma:DMR_34440 site-specific recombinase~PFAM: integrase family protein~SPTR: Integrase family protein%3B~IMG reference gene:2505284815~PFAM: Phage integrase family gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1497 Thein_1498 Thein_1498 Thein_1498 1562251 1562505 + hypothetical protein KEGG: cyn:Cyan7425_5352 protein of unknown function UPF0175~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284816~PFAM: Uncharacterised protein family (UPF0175) gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1498 Thein_1499 Thein_1499 Thein_1499 1562498 1562983 + hypothetical protein COGs: COG2405 nucleic acid-binding protein contains PIN domain~KEGG: ter:Tery_4273 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284817~PFAM: Domain of unknown function (DUF3368) gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1499 Thein_1500 Thein_1500 Thein_1500 1562973 1563116 - pseudogene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1500 Thein_1501 Thein_1501 Thein_1501 1563355 1564353 - hypothetical protein KEGG: mja:MJ0650 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284819 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1501 Thein_1502 Thein_1502 Thein_1502 1564457 1564687 + hypothetical protein KEGG: cak:Caul_3843 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284820 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1502 Thein_1503 Thein_1503 Thein_1503 1564691 1567723 + Bifunctional DNA primase/polymerase InterPro IPR015330~KEGG: drt:Dret_2544 hypothetical protein~PFAM: Bifunctional DNA primase/polymerase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284821~PFAM: Bifunctional DNA primase/polymerase%2C N-terminal gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1503 Thein_1504 Thein_1504 Thein_1504 1567716 1567961 + hypothetical protein KEGG: uma:UM02574.1 hypothetical protein~IMG reference gene:2505284822 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1504 Thein_1505 Thein_1505 Thein_1505 1568001 1569680 + type III restriction protein res subunit COGs: COG1061 DNA or RNA helicase of superfamily II~InterPro IPR014001:IPR001650:IPR006935:IPR014021~KEGG: wch:wcw_p0014 putative helicase~PFAM: type III restriction protein res subunit%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: Putative helicase%3B~IMG reference gene:2505284823~PFAM: Helicase conserved C-terminal domain%3B Type III restriction enzyme%2C res subunit gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1505 Thein_1506 Thein_1506 Thein_1506 1569867 1570040 - hypothetical protein KEGG: nde:NIDE3988 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284824 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1506 Thein_1507 Thein_1507 Thein_1507 1570185 1570409 + hypothetical protein KEGG: afn:Acfer_1949 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284825 gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1507 Thein_1508 Thein_1508 Thein_1508 1570609 1571220 + hypothetical protein KEGG: vsp:VS_1096 cell division protein MukB~SPTR: Possible exodeoxyribonuclease V gamma chain%3B~IMG reference gene:2505284826 gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1508 Thein_1509 Thein_1509 Thein_1509 1571217 1571465 + hypothetical protein KEGG: cbf:CLI_3874 putative R-2-hydroxyglutaryl-CoA dehydratase subunit~SPTR: 2-hydroxyglutaryl-CoA dehydratase%2C D-component%3B~IMG reference gene:2505284827 gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1509 Thein_1510 Thein_1510 Thein_1510 1571493 1571885 + hypothetical protein KEGG: dae:Dtox_3705 phage protein~SPTR: Phage replication protein%3B~IMG reference gene:2505284828 gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1510 Thein_1511 Thein_1511 Thein_1511 1571866 1572117 + hypothetical protein KEGG: ckr:CKR_0097 hypothetical protein~SPTR: Altronate dehydratase%3B~IMG reference gene:2505284829 gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1511 Thein_1512 Thein_1512 Thein_1512 1572674 1572883 - hypothetical protein KEGG: dak:DaAHT2_2064 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284831 gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1512 Thein_1513 Thein_1513 Thein_1513 1573285 1573482 + hypothetical protein KEGG: dba:Dbac_1389 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505284832 gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1513 Thein_1514 Thein_1514 Thein_1514 1573499 1574521 + aspartate-semialdehyde dehydrogenase COGs: COG0136 Aspartate-semialdehyde dehydrogenase~InterPro IPR005986:IPR000534:IPR012280:IPR012080~KEGG: aae:aq_1866 aspartate-semialdehyde dehydrogenase~PFAM: Semialdehyde dehydrogenase dimerisation region%3B Semialdehyde dehydrogenase NAD - binding~PRIAM: Aspartate-semialdehyde dehydrogenase~SPTR: Aspartate-semialdehyde dehydrogenase%3B~TIGRFAM: aspartate-semialdehyde dehydrogenase~IMG reference gene:2505284833~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD binding domain~TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1514 Thein_1515 Thein_1515 Thein_1515 1574522 1576141 + Sigma 54 interacting domain protein COGs: COG0497 ATPase involved in DNA repair~InterPro IPR004604:IPR003593:IPR003395:IPR002078~KEGG: sub:SUB1271 DNA repair protein~PFAM: SMC domain protein~SMART: AAA ATPase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: DNA repair protein RecN~IMG reference gene:2505284834~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: DNA repair protein RecN gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1515 Thein_1516 Thein_1516 Thein_1516 1576138 1577103 + protein of unknown function DUF814 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain~KEGG: dtu:Dtur_1496 protein of unknown function DUF814~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284835~PFAM: Domain of unknown function (DUF814)%3B Thiamine biosynthesis protein (ThiI) gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1516 Thein_1517 Thein_1517 Thein_1517 1577165 1578217 + UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl)~InterPro IPR007691:IPR020573:IPR001451~KEGG: dsa:Desal_2522 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase~PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase%2C non-repeat region%3B transferase hexapeptide repeat containing protein~SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase%3B~TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase~IMG reference gene:2505284836~PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase%2C LpxD~TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1517 Thein_1518 Thein_1518 Thein_1518 1578186 1578620 + Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase~InterPro IPR013114~KEGG: cak:Caul_2794 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ~SPTR: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase%3B~IMG reference gene:2505284837~PFAM: FabA-like domain~TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1518 Thein_1519 Thein_1519 Thein_1519 1578622 1579398 + acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase COGs: COG1043 Acyl-(acyl carrier protein)~InterPro IPR010137:IPR001451~KEGG: llo:LLO_2684 UDP-N-acetylglucosamine acyltransferase~PFAM: transferase hexapeptide repeat containing protein~PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase~SPTR: UDP-N-acetylglucosamine acyltransferase%3B~TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase~IMG reference gene:2505284838~PFAM: Bacterial transferase hexapeptide (three repeats)~TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1519 Thein_1520 Thein_1520 Thein_1520 1579370 1580209 + protein of unknown function DUF1009 COGs: COG3494 conserved hypothetical protein~InterPro IPR010415~KEGG: dps:DP2942 hypothetical protein~PFAM: protein of unknown function DUF1009~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284839~PFAM: Protein of unknown function (DUF1009) gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1520 Thein_1521 Thein_1521 Thein_1521 1580202 1581188 + oxidoreductase domain protein COGs: COG0673 dehydrogenase and related protein~InterPro IPR000683:IPR004104~KEGG: gme:Gmet_2352 oxidoreductase-like~PFAM: oxidoreductase domain protein%3B Oxidoreductase domain~SPTR: Oxidoreductase-like%3B~IMG reference gene:2505284840~PFAM: Oxidoreductase family%2C NAD-binding Rossmann fold%3B Oxidoreductase family%2C C-terminal alpha/beta domain gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1521 Thein_1522 Thein_1522 Thein_1522 1581149 1582291 + lipid-A-disaccharide synthase COGs: COG0763 Lipid A disaccharide synthetase~InterPro IPR003835~KEGG: glo:Glov_0767 lipid-A-disaccharide synthase~PFAM: glycosyl transferase family 19~SPTR: Lipid-A-disaccharide synthase%3B~TIGRFAM: lipid-A-disaccharide synthase~IMG reference gene:2505284841~PFAM: Lipid-A-disaccharide synthetase~TIGRFAM: lipid-A-disaccharide synthase gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1522 Thein_1523 Thein_1523 Thein_1523 1582295 1584454 - Amylo-alpha-16-glucosidase COGs: COG3408 Glycogen debranching protein~InterPro IPR010401~KEGG: geo:Geob_1924 amylo-alpha-16-glucosidase~PFAM: Amylo-alpha-16-glucosidase~SPTR: Amylo-alpha-16-glucosidase%3B~IMG reference gene:2505284842~PFAM: Amylo-alpha-1%2C6-glucosidase gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1523 Thein_1524 Thein_1524 Thein_1524 1584451 1585500 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: nwa:Nwat_1578 glycosyl transferase group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2505284843~PFAM: Glycosyl transferases group 1 gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1524 Thein_1525 Thein_1525 Thein_1525 1585641 1586360 + Silent information regulator protein Sir2 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family~InterPro IPR003000~KEGG: rce:RC1_2898 NAD-dependent deacetylase~PFAM: Silent information regulator protein Sir2~SPTR: NAD-dependent deacetylase%3B~IMG reference gene:2505284844~PFAM: Sir2 family gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1525 Thein_1526 Thein_1526 Thein_1526 1586484 1588547 + small GTP-binding protein COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR005225:IPR000795:IPR004161:IPR005517:IPR 000640~KEGG: sat:SYN_02930 elongation factor G~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV%3B elongation factor G domain-containing protein~SPTR: Protein translation elongation factor G%3B~TIGRFAM: small GTP-binding protein~IMG reference gene:2505284845~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1526 Thein_1527 Thein_1527 Thein_1527 1588548 1589042 + molybdenum cofactor synthesis domain protein COGs: COG0521 Molybdopterin biosynthesis protein~InterPro IPR020817:IPR008284:IPR001453~KEGG: pca:Pcar_1966 molybdenum cofactor biosynthesis protein~PFAM: molybdopterin binding domain~SPTR: Molybdenum cofactor biosynthesis protein%3B~TIGRFAM: molybdenum cofactor synthesis domain protein~IMG reference gene:2505284846~PFAM: Probable molybdopterin binding domain~TIGRFAM: molybdenum cofactor synthesis domain gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1527 Thein_1528 Thein_1528 Thein_1528 1589056 1589487 + UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006015:IPR006016~KEGG: mif:Metin_0312 UspA domain protein~PFAM: UspA domain-containing protein~SPTR: UspA domain protein%3B~IMG reference gene:2505284847~PFAM: Universal stress protein family gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1528 Thein_1529 Thein_1529 Thein_1529 1589582 1589857 + Domain of unknown function DUF1844 InterPro IPR014995~KEGG: sfu:Sfum_3650 hypothetical protein~PFAM: Domain of unknown function DUF1844~SPTR: Conserved hypothetical cytosolic protein%3B~IMG reference gene:2505284848~PFAM: Domain of unknown function (DUF1844) gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1529 Thein_1530 Thein_1530 Thein_1530 1589847 1590701 + 4-diphosphocytidyl-2C-methyl-D-erythritolkinase COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase~InterPro IPR004424:IPR006204:IPR013750~KEGG: pca:Pcar_2005 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase~PFAM: GHMP kinase%3B GHMP kinase domain protein~PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase~SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase%3B~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~IMG reference gene:2505284849~PFAM: GHMP kinases C terminal%3B GHMP kinases N terminal domain~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1530 Thein_1531 Thein_1531 Thein_1531 1590706 1591653 + ribose-phosphate pyrophosphokinase COGs: COG0462 Phosphoribosylpyrophosphate synthetase~InterPro IPR005946:IPR000842:IPR000836~KEGG: dps:DP2734 ribose-phosphate pyrophosphokinase~PFAM: phosphoribosyltransferase~PRIAM: Ribose-phosphate diphosphokinase~SPTR: Ribose-phosphate pyrophosphokinase%3B~TIGRFAM: ribose-phosphate pyrophosphokinase~IMG reference gene:2505284850~PFAM: Phosphoribosyl transferase domain~TIGRFAM: ribose-phosphate pyrophosphokinase gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1531 Thein_1532 Thein_1532 Thein_1532 1591685 1592311 + ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc)~InterPro IPR001021:IPR020055~KEGG: hor:Hore_21220 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5~PFAM: Ribosomal protein L25-like~SPTR: 50S ribosomal protein L25%3B~TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5~IMG reference gene:2505284851~PFAM: Ribosomal L25p family~TIGRFAM: ribosomal protein L25%2C Ctc-form gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1532 Thein_1533 Thein_1533 Thein_1533 1592314 1592883 + peptidyl-tRNA hydrolase COGs: COG0193 Peptidyl-tRNA hydrolase~InterPro IPR001328:IPR018171~KEGG: tle:Tlet_0454 peptidyl-tRNA hydrolase~PFAM: peptidyl-tRNA hydrolase~PRIAM: Aminoacyl-tRNA hydrolase~SPTR: Peptidyl-tRNA hydrolase%3B~TIGRFAM: peptidyl-tRNA hydrolase~IMG reference gene:2505284852~PFAM: Peptidyl-tRNA hydrolase~TIGRFAM: peptidyl-tRNA hydrolase gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1533 Thein_1534 Thein_1534 Thein_1534 1592910 1593452 - Appr-1-p processing domain protein COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1~InterPro IPR002589~KEGG: sat:SYN_01003 appr-1-p histone processing protein~PFAM: Appr-1-p processing domain protein~SMART: Appr-1-p processing domain protein~SPTR: Appr-1-p histone processing protein%3B~IMG reference gene:2505284853~PFAM: Macro domain gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1534 Thein_1535 Thein_1535 Thein_1535 1593476 1594555 - chaperone protein DnaJ COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterProIPR003095:IPR012724:IPR001623:IPR001305:IPR 018253:IPR002939~KEGG: tte:TTE0956 molecular chaperone~PFAM: chaperone DnaJ domain protein%3B heat shock protein DnaJ domain protein%3B DnaJ central domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: Chaperone protein dnaJ%3B~TIGRFAM: chaperone protein DnaJ~IMG reference gene:2505284854~PFAM: DnaJ C terminal region%3B DnaJ central domain (4 repeats)%3B DnaJ domain~TIGRFAM: chaperone protein DnaJ gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1535 Thein_1536 Thein_1536 Thein_1536 1594640 1595863 + exodeoxyribonuclease VII%2C large subunit COGs: COG1570 Exonuclease VII large subunit~InterPro IPR003753:IPR004365:IPR020579~KEGG: sth:STH1846 exodeoxyribonuclease VII large subunit~PFAM: Exonuclease VII%2C large subunit-like%3B nucleic acid binding OB-fold tRNA/helicase-type~SPTR: Exodeoxyribonuclease 7 large subunit%3B~TIGRFAM: exodeoxyribonuclease VII%2C large subunit~IMG reference gene:2505284855~PFAM: Exonuclease VII%2C large subunit%3B OB-fold nucleic acid binding domain~TIGRFAM: exodeoxyribonuclease VII%2C large subunit gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1536 Thein_1537 Thein_1537 Thein_1537 1596140 1596955 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: hha:Hhal_1684 peptidase M23B~PFAM: Peptidase M23~SPTR: Peptidase M23%3B~IMG reference gene:2505284856~PFAM: Peptidase family M23 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1537 Thein_1538 Thein_1538 Thein_1538 1596955 1597176 + exodeoxyribonuclease VII%2C small subunit InterPro IPR003761~KEGG: gur:Gura_2177 exodeoxyribonuclease VII small subunit~PFAM: Exonuclease VII small subunit~SPTR: Exodeoxyribonuclease 7 small subunit%3B~TIGRFAM: exodeoxyribonuclease VII%2C small subunit~IMG reference gene:2505284857~PFAM: Exonuclease VII small subunit~TIGRFAM: exodeoxyribonuclease VII%2C small subunit gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1538 Thein_1539 Thein_1539 Thein_1539 1597177 1598079 + Polyprenyl synthetase COGs: COG0142 Geranylgeranyl pyrophosphate synthase~InterPro IPR000092~KEGG: pth:PTH_1194 geranylgeranyl pyrophosphate synthase~PFAM: Polyprenyl synthetase~SPTR: Geranylgeranyl pyrophosphate synthase%3B~IMG reference gene:2505284858~PFAM: Polyprenyl synthetase gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1539 Thein_1540 Thein_1540 Thein_1540 1598076 1599308 - sodium/hydrogen exchanger COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter~InterPro IPR006153~KEGG: dal:Dalk_1995 sodium/hydrogen exchanger~PFAM: sodium/hydrogen exchanger~SPTR: Sodium/hydrogen exchanger%3B~IMG reference gene:2505284859~PFAM: Sodium/hydrogen exchanger family gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1540 Thein_1541 Thein_1541 Thein_1541 1599376 1601280 + deoxyxylulose-5-phosphate synthase COGs: COG1154 Deoxyxylulose-5-phosphate synthase~InterProIPR005477:IPR005474:IPR020826:IPR005475:IPR 005476~KEGG: dak:DaAHT2_1033 deoxyxylulose-5-phosphate synthase~PFAM: Transketolase central region%3B Transketolase domain-containing protein~SPTR: 1-deoxy-D-xylulose-5-phosphate synthase%3B~TIGRFAM: deoxyxylulose-5-phosphate synthase~IMG reference gene:2505284860~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1541 Thein_1542 Thein_1542 Thein_1542 1601286 1603529 - patched family protein COGs: COG1033 exporter of the RND superfamily protein~InterPro IPR000731~KEGG: dba:Dbac_2229 patched family protein~SPTR: Patched%3B~IMG reference gene:2505284861~PFAM: MMPL family gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1542 Thein_1543 Thein_1543 Thein_1543 1603551 1604894 - hypothetical protein KEGG: dba:Dbac_2226 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284862 gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1543 Thein_1544 Thein_1544 Thein_1544 1604888 1605646 - hypothetical protein KEGG: dba:Dbac_2225 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284863~PFAM: Protein of unknown function (DUF1329) gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1544 Thein_1545 Thein_1545 Thein_1545 1605683 1606342 - hypothetical protein KEGG: sfu:Sfum_0603 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284864 gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1545 Thein_1546 Thein_1546 Thein_1546 1606370 1607095 + orotidine 5'-phosphate decarboxylase COGs: COG0284 Orotidine-5'-phosphate decarboxylase~InterPro IPR014732:IPR018089:IPR001754~KEGG: dat:HRM2_35880 PyrF~PFAM: Orotidine 5'-phosphate decarboxylase~PRIAM: Orotidine-5'-phosphate decarboxylase~SPTR: PyrF%3B~TIGRFAM: orotidine 5'-phosphate decarboxylase~IMG reference gene:2505284865~PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family~TIGRFAM: orotidine 5'-phosphate decarboxylase%2C subfamily 1 gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1546 Thein_1547 Thein_1547 Thein_1547 1607096 1608181 + protein of unknown function DUF763 COGs: COG1415 conserved hypothetical protein~InterPro IPR008482~KEGG: mta:Moth_0136 hypothetical protein~PFAM: protein of unknown function DUF763~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284866~PFAM: Protein of unknown function (DUF763) gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1547 Thein_1548 Thein_1548 Thein_1548 1608334 1608867 + hypothetical protein KEGG: dde:Dde_2270 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284867 gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1548 Thein_1549 Thein_1549 Thein_1549 1608894 1609904 + Nitrate reductase gamma subunit COGs: COG2181 Nitrate reductase gamma subunit~InterPro IPR003816~KEGG: sfu:Sfum_1146 nitrate reductase%2C gamma subunit~PFAM: Nitrate reductase gamma subunit~SPTR: Nitrate reductase%2C gamma subunit%3B~IMG reference gene:2505284868~PFAM: Nitrate reductase gamma subunit gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1549 Thein_1550 Thein_1550 Thein_1550 1609935 1611569 + 4Fe-4S ferredoxin%2C iron-sulfur binding protein COGs: COG0247 Fe-S oxidoreductase~InterPro IPR017900:IPR006655~KEGG: drt:Dret_0236 4Fe-4S ferredoxin%2C iron-sulfur binding~SPTR: Membrane-bound menaquinol oxidoreductase%2C cytoplasmic ferredoxin subunit%3B~IMG reference gene:2505284869 gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1550 Thein_1551 Thein_1551 Thein_1551 1611562 1612005 + cytochrome c family protein InterPro IPR011031~KEGG: drt:Dret_0237 cytochrome c family protein~SPTR: Membrane-bound menaquinol oxidoreductase%2C cytochrome c subunit%3B~IMG reference gene:2505284870 gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1551 Thein_1552 Thein_1552 Thein_1552 1611939 1612736 + 4Fe-4S ferredoxin iron-sulfur binding domain protein COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR006311:IPR017909:IPR017896:IPR017900~KEGG: drt:Dret_0238 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: Membrane-bound menaquinol oxidoreductase%2C periplasmic ferredoxin subunit%3B~manually curated~IMG reference gene:2505284871 gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1552 Thein_1553 Thein_1553 Thein_1553 1612750 1613910 + Polysulphide reductase NrfD COGs: COG5557 Polysulphide reductase~InterPro IPR005614~KEGG: dhd:Dhaf_0260 polysulphide reductase NrfD~PFAM: Polysulphide reductase NrfD~SPTR: Polysulphide reductase NrfD%3B~IMG reference gene:2505284872~PFAM: Polysulphide reductase%2C NrfD gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1553 Thein_1554 Thein_1554 Thein_1554 1613979 1615439 + cobyrinic acid a%2Cc-diamide synthase COGs: COG1797 Cobyrinic acid a c-diamide synthase~InterPro IPR004484:IPR017929:IPR011698~KEGG: sfu:Sfum_4044 cobyrinic acid a%2Cc-diamide synthase~PFAM: CobB/CobQ domain protein glutamine amidotransferase~SPTR: Cobyrinate a%2Cc-diamide synthase / hydrogenobyrinic acid a%2Cc-diamide synthase (Glutamine-hydrolysing)%3B~TIGRFAM: cobyrinic acid a%2Cc-diamide synthase~IMG reference gene:2505284873~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain%3B CobB/CobQ-like glutamine amidotransferase domain~TIGRFAM: cobyrinic acid a%2Cc-diamide synthase gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1554 Thein_1555 Thein_1555 Thein_1555 1615455 1615643 + ferredoxin III InterPro IPR017896:IPR017900~KEGG: dps:DP2755 ferredoxin III~SPTR: Probable ferredoxin III%3B~IMG reference gene:2505284874~PFAM: 4Fe-4S binding domain gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1555 Thein_1556 Thein_1556 Thein_1556 1615647 1616234 - hypothetical protein KEGG: fpl:Ferp_1592 SMC domain protein~SPTR: ErpL protein%3B~IMG reference gene:2505284875 gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1556 Thein_1557 Thein_1557 Thein_1557 1616264 1617616 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: dat:HRM2_27810 peptidase M23/M37 family protein~PFAM: Peptidase M23~SPTR: Peptidase M23/M37 family protein%3B~IMG reference gene:2505284876~PFAM: Peptidase family M23 gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1557 Thein_1558 Thein_1558 Thein_1558 1617767 1618744 - dihydrouridine synthase DuS COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR001269~KEGG: ckr:CKR_0144 hypothetical protein~PFAM: dihydrouridine synthase DuS~SPTR: TIM-barrel protein%2C nifR3 family%3B~IMG reference gene:2505284877~PFAM: Dihydrouridine synthase (Dus)~TIGRFAM: putative TIM-barrel protein%2C nifR3 family gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1558 Thein_1559 Thein_1559 Thein_1559 1618768 1620087 - ketose-bisphosphate aldolase class-II InterPro IPR019825:IPR000771~KEGG: tye:THEYE_A1945 hypothetical protein~PFAM: ketose-bisphosphate aldolase class-II~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284878~PFAM: Fructose-bisphosphate aldolase class-II gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1559 Thein_1560 Thein_1560 Thein_1560 1620089 1620856 - tRNA methyltransferase complex GCD14 subunit COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase~InterPro IPR014816~KEGG: tai:Taci_1129 tRNA (adenine-N(1)-)-methyltransferase~PFAM: tRNA methyltransferase complex GCD14 subunit~SPTR: tRNA (Adenine-N(1)-)-methyltransferase%3B~IMG reference gene:2505284879~PFAM: tRNA methyltransferase complex GCD14 subunit gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1560 Thein_1561 Thein_1561 Thein_1561 1620846 1622258 - peptidase M18 aminopeptidase I COGs: COG1362 Aspartyl aminopeptidase~InterPro IPR001948~KEGG: dal:Dalk_0808 putative aminopeptidase 1~PFAM: peptidase M18 aminopeptidase I~SPTR: M18 family aminopeptidase%3B~IMG reference gene:2505284880~PFAM: Aminopeptidase I zinc metalloprotease (M18) gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1561 Thein_1562 Thein_1562 Thein_1562 1622268 1623119 - hypothetical protein COGs: COG0616 Periplasmic serine protease (ClpP class)~KEGG: ddf:DEFDS_0218 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284881~PFAM: Serine dehydrogenase proteinase gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1562 Thein_1563 Thein_1563 Thein_1563 1623129 1623869 - Rhomboid family protein COGs: COG0705 membrane protein~InterPro IPR002610~KEGG: ddf:DEFDS_0217 rhomboid family protein~PFAM: Rhomboid family protein~SPTR: Rhomboid family protein%3B~IMG reference gene:2505284882~PFAM: Rhomboid family gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1563 Thein_1564 Thein_1564 Thein_1564 1623866 1624918 - hypothetical protein COGs: COG4030 conserved hypothetical protein~KEGG: mth:MTH402 hypothetical protein~SPTR: Putative uncharacterized protein ehaR%3B~IMG reference gene:2505284883 gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1564 Thein_1565 Thein_1565 Thein_1565 1624994 1625479 + hypothetical protein KEGG: afw:Anae109_2844 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284884 gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1565 Thein_1566 Thein_1566 Thein_1566 1625479 1627026 + GMP synthase%2C large subunit COGs: COG0519 GMP synthase PP-ATPase domain/subunit~InterProIPR011702:IPR006220:IPR001317:IPR004739:IPR 001674:IPR017926:IPR000991~KEGG: tye:THEYE_A0205 GMP synthase~PFAM: GMP synthase domain protein%3B glutamine amidotransferase class-I~SPTR: GMP synthase (Glutamine-hydrolyzing)%3B~TIGRFAM: GMP synthase%2C large subunit%3B GMP synthase%2C small subunit~IMG reference gene:2505284885~PFAM: Glutamine amidotransferase class-I%3B GMP synthase C terminal domain%3B NAD synthase~TIGRFAM: GMP synthase (glutamine-hydrolyzing)%2C C-terminal domain or B subunit%3B GMP synthase (glutamine-hydrolyzing)%2C N-terminal domain or A subunit gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1566 Thein_1567 Thein_1567 Thein_1567 1627058 1627630 - Rubrerythrin COGs: COG1592 Rubrerythrin~InterPro IPR004039:IPR009040:IPR003251~KEGG: dak:DaAHT2_2069 rubrerythrin~PFAM: Rubrerythrin~SPTR: Rubrerythrin%3B~IMG reference gene:2505284886~PFAM: Rubrerythrin gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1567 Thein_1568 Thein_1568 Thein_1568 1627714 1628724 - NAD-dependent glycerol-3-phosphate dehydrogenase domain protein COGs: COG0240 Glycerol-3-phosphate dehydrogenase~InterPro IPR006168:IPR011128:IPR006109~KEGG: lbf:LBF_0334 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein~SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]%3B~IMG reference gene:2505284887~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus%3B NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1568 Thein_1569 Thein_1569 Thein_1569 1628801 1629292 - hypothetical protein KEGG: slp:Slip_1886 PilT protein domain protein~SPTR: PilT protein domain protein%3B~IMG reference gene:2505284888 gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1569 Thein_1570 Thein_1570 Thein_1570 1629300 1629467 - pseudogene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1570 Thein_1571 Thein_1571 Thein_1571 1629591 1632719 - type I site-specific deoxyribonuclease%2C HsdR family COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterProIPR004473:IPR014001:IPR014021:IPR007409:IPR 006935~KEGG: chl:Chy400_1964 type I site-specific deoxyribonuclease%2C HsdR family~PFAM: protein of unknown function DUF450%3B type III restriction protein res subunit~SMART: DEAD-like helicase~SPTR: Type I site-specific deoxyribonuclease%2C HsdR family%3B~TIGRFAM: type I site-specific deoxyribonuclease%2C HsdR family~IMG reference gene:2505284890~PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)%3B Domain of unknown function (DUF3387)%3B Type III restriction enzyme%2C res subunit~TIGRFAM: type I site-specific deoxyribonuclease%2C HsdR family gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1571 Thein_1572 Thein_1572 Thein_1572 1632743 1633429 - hypothetical protein KEGG: lch:Lcho_1314 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284891 gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1572 Thein_1573 Thein_1573 Thein_1573 1633538 1635151 - hypothetical protein KEGG: kol:Kole_1274 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284892 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1573 Thein_1574 Thein_1574 Thein_1574 1635138 1636520 - restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: hin:HI1286 type I restriction/modification specificity protein~PFAM: restriction modification system DNA specificity domain~SPTR: Restriction modification system DNA specificity domain protein%3B~IMG reference gene:2505284893~PFAM: Type I restriction modification DNA specificity domain gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1574 Thein_1575 Thein_1575 Thein_1575 1636525 1638864 - peptidase S8 and S53 subtilisin kexin sedolisin InterPro IPR000209~KEGG: bbr:BB0911 putative serine protease~PFAM: peptidase S8 and S53 subtilisin kexin sedolisin~SPTR: Subtilisin-like serine protease P4%3B~IMG reference gene:2505284894~PFAM: Subtilase family gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1575 Thein_1576 Thein_1576 Thein_1576 1638868 1639851 - AAA ATPase central domain protein COGs: COG1223 ATPase (AAA+ superfamily)~InterPro IPR003593:IPR003959~KEGG: bbr:BB0910 putative ATPase~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase~SPTR: Putative ATPase%3B~IMG reference gene:2505284895~PFAM: ATPase family associated with various cellular activities (AAA) gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1576 Thein_1577 Thein_1577 Thein_1577 1639989 1641002 - protein of unknown function DUF1016 COGs: COG4804 conserved hypothetical protein~InterPro IPR009362~KEGG: rrs:RoseRS_0273 hypothetical protein~PFAM: protein of unknown function DUF1016~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284896~PFAM: Protein of unknown function (DUF1016) gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1577 Thein_1578 Thein_1578 Thein_1578 1640992 1642680 - Site-specific DNA-methyltransferase (adenine-specific) COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR002296:IPR002052:IPR003356~KEGG: chl:Chy400_1958 N-6 DNA methylase~PFAM: N-6 DNA methylase~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: N-6 DNA methylase%3B~IMG reference gene:2505284897~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain~TIGRFAM: type I restriction system adenine methylase (hsdM) gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1578 Thein_1579 Thein_1579 Thein_1579 1642728 1642895 - hypothetical protein IMG reference gene:2505284898 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1579 Thein_1580 Thein_1580 Thein_1580 1643628 1643888 + hypothetical protein KEGG: nmr:Nmar_1213 SMC domain-containing protein~SPTR: Phage major capsid protein%2C HK97 family%3B~IMG reference gene:2505284901 gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1580 Thein_1581 Thein_1581 Thein_1581 1643899 1644261 + flagellar protein FlaG protein COGs: COG1334 Uncharacterized flagellar protein FlaG~InterPro IPR005186~KEGG: pmx:PERMA_1619 flagellar protein FlaG~PFAM: flagellar protein FlaG protein~SPTR: Flagellar protein FlaG%3B~IMG reference gene:2505284902~PFAM: FlaG protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1581 Thein_1582 Thein_1582 Thein_1582 1644264 1644851 + response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: dal:Dalk_0648 response regulator receiver protein~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505284903~PFAM: Response regulator receiver domain gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1582 Thein_1583 Thein_1583 Thein_1583 1644844 1646313 + response regulator receiver modulated metal dependent phosphohydrolase COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR006675:IPR001789:IPR003607:IPR006674~KEGG: dat:HRM2_37390 predicted two-component system transcriptional regulator~PFAM: response regulator receiver%3B metal-dependent phosphohydrolase HD sub domain~SMART: response regulator receiver%3B metal-dependent phosphohydrolase HD region~SPTR: Predicted two-component system transcriptional regulator%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505284904~PFAM: HD domain%3B Response regulator receiver domain~TIGRFAM: uncharacterized domain HDIG gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1583 Thein_1584 Thein_1584 Thein_1584 1646279 1646908 + hypothetical protein KEGG: sfu:Sfum_3293 ATPase domain-containing protein~SPTR: ATP-binding region%2C ATPase domain protein domain protein%3B~IMG reference gene:2505284905 gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1584 Thein_1585 Thein_1585 Thein_1585 1646908 1647969 + DNA protecting protein DprA COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake~InterPro IPR003488~KEGG: gme:Gmet_0890 smf protein~PFAM: SMF family protein~SPTR: SMF protein%3B~TIGRFAM: DNA protecting protein DprA~IMG reference gene:2505284906~PFAM: DNA recombination-mediator protein A~TIGRFAM: DNA protecting protein DprA gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1585 Thein_1586 Thein_1586 Thein_1586 1647966 1650179 + DNA topoisomerase I COGs: COG0550 Topoisomerase IA~InterProIPR000380:IPR005733:IPR006154:IPR003601:IPR 003602:IPR006171:IPR013497:IPR013498~KEGG: dak:DaAHT2_2318 DNA topoisomerase I~PFAM: DNA topoisomerase type IA central domain protein%3B TOPRIM domain-containing protein%3B DNA topoisomerase type IA zn finger domain protein~PRIAM: DNA topoisomerase~SMART: DNA topoisomerase I DNA-binding%3B DNA topoisomerase I ATP-binding%3B Toprim sub domain-containing protein~SPTR: DNA topoisomerase I%3B~TIGRFAM: DNA topoisomerase I~IMG reference gene:2505284907~PFAM: Toprim domain%3B Topoisomerase DNA binding C4 zinc finger%3B DNA topoisomerase~TIGRFAM: DNA topoisomerase I%2C bacterial%3B DNA topoisomerase I%2C archaeal gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1586 Thein_1587 Thein_1587 Thein_1587 1650359 1651021 + purine or other phosphorylase family 1 COGs: COG2820 Uridine phosphorylase~InterPro IPR000845~KEGG: dat:HRM2_28110 putative purine nucleoside phosphorylase~PFAM: purine or other phosphorylase family 1~SPTR: Putative purine nucleoside phosphorylase%3B~IMG reference gene:2505284908~PFAM: Phosphorylase superfamily gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1587 Thein_1588 Thein_1588 Thein_1588 1651090 1651263 + twin-arginine translocation protein%2C TatA/E family subunit InterPro IPR003998:IPR006312:IPR003369~KEGG: dps:DP2620 sec-independent protein translocase protein TatE~PFAM: sec-independent translocation protein mttA/Hcf106~SPTR: Related to Sec-independent protein translocase protein TatE%3B~TIGRFAM: twin-arginine translocation protein%2C TatA/E family subunit~IMG reference gene:2505284909~PFAM: mttA/Hcf106 family~TIGRFAM: twin arginine-targeting protein translocase%2C TatA/E family gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1588 Thein_1589 Thein_1589 Thein_1589 1651250 1652581 + cytochrome c-type forming protein Ccs1 COGs: COG1333 ResB protein required for cytochrome c biosynthesis~KEGG: dps:DP1682 cytochrome c-type forming protein Ccs1~SPTR: Related to cytochrome c-type forming protein Ccs1%3B~IMG reference gene:2505284910~PFAM: ResB-like family gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1589 Thein_1590 Thein_1590 Thein_1590 1652765 1652992 + Uncharacterized protein family UPF0150 InterPro IPR005357~KEGG: swo:Swol_0620 hypothetical protein~PFAM: Uncharacterised protein family UPF0150~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284912~PFAM: Uncharacterised protein family (UPF0150) gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1590 Thein_1591 Thein_1591 Thein_1591 1652985 1653230 + YcfA family protein COGs: COG1724 periplasmic or secreted lipoprotein~InterPro IPR012933~KEGG: mba:Mbar_A2121 hypothetical protein~PFAM: YcfA family protein~SPTR: Similar to tr|Q8YVZ2|Q8YVZ2%3B~IMG reference gene:2505284913~PFAM: YcfA-like protein gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1591 Thein_1592 Thein_1592 Thein_1592 1653232 1655145 + threonyl-tRNA synthetase COGs: COG0441 Threonyl-tRNA synthetase~InterProIPR018158:IPR002320:IPR006195:IPR004095:IPR 012947:IPR002314:IPR004154~KEGG: dak:DaAHT2_1245 threonyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Threonyl/alanyl tRNA synthetase SAD%3B TGS domain-containing protein%3B Anticodon-binding domain protein~SPTR: Threonyl-tRNA synthetase%3B~TIGRFAM: threonyl-tRNA synthetase~IMG reference gene:2505284914~PFAM: Anticodon binding domain%3B Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: threonyl-tRNA synthetase gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1592 Thein_1593 Thein_1593 Thein_1593 1655154 1655678 + translation initiation factor IF-3 COGs: COG0290 Translation initiation factor 3 (IF-3)~InterPro IPR001288:IPR019814:IPR019815~KEGG: sfu:Sfum_0425 translation initiation factor IF-3~PFAM: Translation initiation factor 3-like~SPTR: Translation initiation factor IF-3%3B~TIGRFAM: translation initiation factor IF-3~IMG reference gene:2505284915~PFAM: Translation initiation factor IF-3%2C C-terminal domain%3B Translation initiation factor IF-3%2C N-terminal domain~TIGRFAM: translation initiation factor IF-3 gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1593 Thein_1594 Thein_1594 Thein_1594 1655710 1655916 + ribosomal protein L35 InterPro IPR001706:IPR018265:IPR021137~KEGG: cth:Cthe_1224 50S ribosomal protein L35P~PFAM: Ribosomal protein L35~SPTR: 50S ribosomal protein L35%3B~TIGRFAM: ribosomal protein L35~IMG reference gene:2505284916~PFAM: Ribosomal protein L35~TIGRFAM: ribosomal protein L35 gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1594 Thein_1595 Thein_1595 Thein_1595 1655932 1656288 + ribosomal protein L20 COGs: COG0292 Ribosomal protein L20~InterPro IPR005813~KEGG: ddf:DEFDS_1501 50S ribosomal protein L20~PFAM: ribosomal protein L20~SPTR: 50S ribosomal protein L20%3B~TIGRFAM: ribosomal protein L20~IMG reference gene:2505284917~PFAM: Ribosomal protein L20~TIGRFAM: ribosomal protein L20 gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1595 Thein_1596 Thein_1596 Thein_1596 1656290 1657300 + phenylalanyl-tRNA synthetase%2C alpha subunit COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit~InterPro IPR004529:IPR006195:IPR004188:IPR002319~KEGG: sat:SYN_01721 phenylalanyl-tRNA synthetase alpha chain~PFAM: phenylalanyl-tRNA synthetase class IIc%3B aminoacyl tRNA synthetase class II domain protein~SPTR: Phenylalanyl-tRNA synthetase alpha subunit%3B~TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit~IMG reference gene:2505284918~PFAM: tRNA synthetases class II core domain (F)%3B Aminoacyl tRNA synthetase class II%2C N-terminal domain~TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1596 Thein_1597 Thein_1597 Thein_1597 1657300 1659702 + phenylalanyl-tRNA synthetase%2C beta subunit COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit~InterProIPR004532:IPR002547:IPR005121:IPR005146:IPR 005147~KEGG: sfu:Sfum_0429 phenylalanyl-tRNA synthetase%2C beta subunit~PFAM: B3/4 domain protein%3B t-RNA-binding domain-containing protein%3B tRNA synthetase B5%3B ferredoxin-fold anticodon-binding~SPTR: Phenylalanyl-tRNA synthetase beta subunit%3B~TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit~IMG reference gene:2505284919~PFAM: tRNA synthetase B5 domain%3B B3/4 domain%3B Ferredoxin-fold anticodon binding domain%3B Putative tRNA binding domain~TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit%2C non-spirochete bacterial gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1597 Thein_1598 Thein_1598 Thein_1598 1659699 1659983 + histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR000119~KEGG: dar:Daro_1327 integration host factor%2C alpha subunit~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein~SPTR: Integration host factor subunit alpha 1%3B~IMG reference gene:2505284920~PFAM: Bacterial DNA-binding protein gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1598 Thein_1599 Thein_1599 Thein_1599 1659973 1660311 + regulatory protein MerR InterPro IPR000551~KEGG: wbm:Wbm0660 transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR~SPTR: Predicted transcriptional regulator%3B~IMG reference gene:2505284921~PFAM: MerR family regulatory protein gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1599 Thein_1600 Thein_1600 Thein_1600 1660321 1661121 + alpha/beta hydrolase fold protein COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)~KEGG: sli:Slin_3239 alpha/beta hydrolase fold protein~SPTR: Alpha/beta hydrolase fold protein%3B~IMG reference gene:2505284922~PFAM: alpha/beta hydrolase fold gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1600 Thein_1601 Thein_1601 Thein_1601 1661143 1662282 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: tal:Thal_1434 glycosyl transferase group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase group 1%3B~manually curated~IMG reference gene:2505284923~PFAM: Glycosyl transferases group 1 gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1601 Thein_1602 Thein_1602 Thein_1602 1662215 1664515 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR003141:IPR004013:IPR001296~KEGG: tal:Thal_1435 glycosyl transferase group 1~PFAM: glycosyl transferase group 1%3B PHP domain protein~SMART: phosphoesterase PHP domain protein~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2505284924~PFAM: PHP domain%3B Glycosyl transferases group 1 gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1602 Thein_1603 Thein_1603 Thein_1603 1664490 1665182 - deacetylase-like protein COGs: COG3233 deacetylase~KEGG: tal:Thal_1436 deacetylase-like protein~SPTR: Deacetylase-like protein%3B~IMG reference gene:2505284925~PFAM: Uncharacterized protein conserved in bacteria (DUF2334) gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1603 Thein_1604 Thein_1604 Thein_1604 1665388 1665669 + hypothetical protein KEGG: nmu:Nmul_A0032 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284926 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1604 Thein_1605 Thein_1605 Thein_1605 1665659 1666114 + hypothetical protein KEGG: dat:HRM2_41330 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284927 gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1605 Thein_1606 Thein_1606 Thein_1606 1666129 1666884 + hypothetical protein KEGG: nhl:Nhal_1388 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284928 gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1606 Thein_1607 Thein_1607 Thein_1607 1666894 1669893 + ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC COGs: COG0474 Cation transport ATPase~InterProIPR001757:IPR000695:IPR018303:IPR004014:IPR 008250:IPR005834:IPR006068~KEGG: cyt:cce_2606 cation-transporting ATPase~PFAM: E1-E2 ATPase-associated domain protein%3B cation transporting ATPase domain protein%3B Haloacid dehalogenase domain protein hydrolase~SPTR: ATPase%2C P-type (Transporting)%2C HAD superfamily%2C subfamily IC%3B~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~IMG reference gene:2505284929~PFAM: E1-E2 ATPase%3B Cation transporting ATPase%2C C-terminus%3B Cation transporter/ATPase%2C N-terminus%3B haloacid dehalogenase-like hydrolase~TIGRFAM: plasma-membrane calcium-translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1607 Thein_1608 Thein_1608 Thein_1608 1669890 1671080 + S-adenosylmethionine synthetase COGs: COG0192 S-adenosylmethionine synthetase~InterPro IPR002133~KEGG: nmu:Nmul_A0036 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase~PRIAM: Methionine adenosyltransferase~SPTR: S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT)%3B~TIGRFAM: S-adenosylmethionine synthetase~IMG reference gene:2505284930~PFAM: S-adenosylmethionine synthetase%2C C-terminal domain%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal domain~TIGRFAM: S-adenosylmethionine synthetase gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1608 Thein_1609 Thein_1609 Thein_1609 1671115 1671486 - hypothetical protein KEGG: nmu:Nmul_A0035 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284931 gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1609 Thein_1610 Thein_1610 Thein_1610 1671428 1671754 - Insertion element protein InterPro IPR003220~KEGG: sfu:Sfum_2900 hypothetical protein~PFAM: Insertion element protein~SPTR: ISCpe7%2C transposase%3B~IMG reference gene:2505284932~PFAM: Topoisomerase DNA binding C4 zinc finger%3B Insertion element protein gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1610 Thein_1611 Thein_1611 Thein_1611 1671905 1672177 + polyhydroxyalkanoic acid system protein InterPro IPR013433~KEGG: maq:Maqu_3414 putative polyhydroxyalkanoic acid system protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: polyhydroxyalkanoic acid system protein~IMG reference gene:2505284933~PFAM: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)~TIGRFAM: putative polyhydroxyalkanoic acid system protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1611 Thein_1612 Thein_1612 Thein_1612 1672169 1673137 - conserved hypothetical protein COGs: COG1242 Fe-S oxidoreductase~InterPro IPR005911:IPR006638:IPR007197~KEGG: dol:Dole_0964 putative radical SAM protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Conserved hypothetical radical SAM protein%3B~TIGRFAM: conserved hypothetical protein~IMG reference gene:2505284934~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM protein%2C TIGR01212 family gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1612 Thein_1613 Thein_1613 Thein_1613 1673371 1674234 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284935~PFAM: Transposase IS200 like gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1613 Thein_1614 Thein_1614 Thein_1614 1674356 1675195 + hypothetical protein KEGG: dak:DaAHT2_0838 thymidylate synthase complementing protein ThyX~SPTR: Thymidylate synthase complementing protein ThyX%3B~IMG reference gene:2505284936 gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1614 Thein_1615 Thein_1615 Thein_1615 1675207 1677147 + aconitate hydratase COGs: COG1048 Aconitase A~InterPro IPR001030:IPR006250:IPR020781:IPR000573~KEGG: dak:DaAHT2_1713 aconitate hydratase~PFAM: aconitate hydratase domain-containing protein~SPTR: Putative aconitate hydratase%3B~TIGRFAM: aconitate hydratase~IMG reference gene:2505284937~PFAM: Aconitase C-terminal domain%3B Aconitase family (aconitate hydratase)~TIGRFAM: aconitate hydratase%2C putative%2C Aquifex type gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1615 Thein_1616 Thein_1616 Thein_1616 1677147 1679825 + protein of unknown function UPF0182 COGs: COG1615 conserved hypothetical protein~InterPro IPR005372~KEGG: gem:GM21_2279 protein of unknown function UPF0182~PFAM: protein of unknown function UPF0182~SPTR: UPF0182 protein DAMO_1249%3B~IMG reference gene:2505284938~PFAM: Uncharacterised protein family (UPF0182) gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1616 Thein_1617 Thein_1617 Thein_1617 1680050 1680490 + hypothetical protein KEGG: sfu:Sfum_2762 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284939 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1617 Thein_1618 Thein_1618 Thein_1618 1680487 1682037 + multi-sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR004358:IPR000014:IPR003661:IPR003594:IPR 005467:IPR000700:IPR013767~KEGG: sfu:Sfum_2763 multi-sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS fold domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS domain containing protein~SPTR: PAS/PAC sensor signal transduction histidine kinase%3B~TIGRFAM: PAS sensor protein~IMG reference gene:2505284940~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1618 Thein_1619 Thein_1619 Thein_1619 1682049 1683437 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR020441:IPR001789:IPR003593:IPR002078:IPR 002197~KEGG: dak:DaAHT2_0272 putative two component%2C sigma54 specific%2C transcriptional regulator%2C fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Helix-turn-helix%2C Fis-type%3B~IMG reference gene:2505284941~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1619 Thein_1620 Thein_1620 Thein_1620 1683694 1684983 + protein of unknown function DUF81 InterPro IPR002781~KEGG: dal:Dalk_2526 protein of unknown function DUF81~PFAM: protein of unknown function DUF81~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284942~PFAM: Sulfite exporter TauE/SafE gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1620 Thein_1621 Thein_1621 Thein_1621 1685029 1685661 + hypothetical protein KEGG: dde:Dde_0600 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284943 gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1621 Thein_1622 Thein_1622 Thein_1622 1685672 1687768 + molybdopterin oxidoreductase COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing~InterPro IPR006655:IPR006963:IPR006656:IPR006657~KEGG: sfu:Sfum_1318 molybdopterin oxidoreductase~PFAM: molybdopterin oxidoreductase%3B molybdopterin oxidoreductase Fe4S4 region%3B molydopterin dinucleotide-binding region~SPTR: Molybdopterin oxidoreductase%3B~IMG reference gene:2505284944~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain%3B Molybdopterin oxidoreductase Fe4S4 domain gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1622 Thein_1623 Thein_1623 Thein_1623 1687787 1688311 + anaerobic dimethyl sulfoxide reductase chain B COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR017896:IPR017900~KEGG: tye:THEYE_A1127 anaerobic dimethyl sulfoxide reductase chain B~SPTR: Anaerobic dimethyl sulfoxide reductase chain B%3B~IMG reference gene:2505284945 gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1623 Thein_1624 Thein_1624 Thein_1624 1688482 1689015 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR017896:IPR017900~KEGG: sse:Ssed_0517 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B~IMG reference gene:2505284946 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1624 Thein_1625 Thein_1625 Thein_1625 1689027 1689395 + NADH-ubiquinone/plastoquinone oxidoreductase chain 3 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A)~InterPro IPR000440~KEGG: gem:GM21_4010 NADH-ubiquinone/plastoquinone oxidoreductase chain 3~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3~SPTR: NADH-quinone oxidoreductase subunit%3B~IMG reference gene:2505284947~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase%2C chain 3 gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1625 Thein_1626 Thein_1626 Thein_1626 1689386 1689898 + NADH-quinone oxidoreductase%2C B subunit COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase~InterPro IPR006138:IPR006137~KEGG: tye:THEYE_A1126 NADH-quinone oxidoreductase chain b 2~PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit~PRIAM: NADH dehydrogenase (quinone)~SPTR: NADH-quinone oxidoreductase subunit B 2%3B~TIGRFAM: NADH-quinone oxidoreductase%2C B subunit~manually curated~selenocysteine-containing protein~IMG reference gene:2505284948~PFAM: NADH ubiquinone oxidoreductase%2C 20 Kd subunit~TIGRFAM: NADH-quinone oxidoreductase%2C B subunit gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1626 Thein_1627 Thein_1627 Thein_1627 1689908 1690510 + NADH (or F420H2) dehydrogenase%2C subunit C COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit~InterPro IPR010218:IPR020396:IPR001268~KEGG: tye:THEYE_A0913 NADH-quinone oxidoreductase chain C~PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit~SPTR: NADH-quinone oxidoreductase%3B~TIGRFAM: NADH (or F420H2) dehydrogenase%2C subunit C~IMG reference gene:2505284949~PFAM: Respiratory-chain NADH dehydrogenase%2C 30 Kd subunit~TIGRFAM: NADH (or F420H2) dehydrogenase%2C subunit C gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1627 Thein_1628 Thein_1628 Thein_1628 1690494 1691726 + NADH dehydrogenase I%2C D subunit COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7~InterPro IPR010219:IPR001135~KEGG: dds:Ddes_1662 NADH dehydrogenase I%2C D subunit~PFAM: NADH-ubiquinone oxidoreductase chain 49kDa~PRIAM: NADH dehydrogenase (quinone)~SPTR: NADH dehydrogenase I%2C D subunit%3B~TIGRFAM: NADH dehydrogenase I%2C D subunit~IMG reference gene:2505284950~PFAM: Respiratory-chain NADH dehydrogenase%2C 49 Kd subunit~TIGRFAM: NADH dehydrogenase I%2C D subunit gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1628 Thein_1629 Thein_1629 Thein_1629 1691738 1692751 + respiratory-chain NADH dehydrogenase subunit 1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H)~InterPro IPR018086:IPR001694~KEGG: dds:Ddes_1661 NADH dehydrogenase (quinone)~PFAM: respiratory-chain NADH dehydrogenase subunit 1~SPTR: NADH dehydrogenase (Quinone)%3B~IMG reference gene:2505284951~PFAM: NADH dehydrogenase gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1629 Thein_1630 Thein_1630 Thein_1630 1692781 1693317 + NADH-quinone oxidoreductase%2C chain I COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)~InterPro IPR010226:IPR017896:IPR017900~KEGG: tye:THEYE_A1124 NADH-quinone oxidoreductase%2C chain I subfamily%2C putative~SPTR: NADH-quinone oxidoreductase%2C chain i subfamily%2C putative%3B~TIGRFAM: NADH-quinone oxidoreductase%2C chain I~IMG reference gene:2505284952~PFAM: 4Fe-4S binding domain~TIGRFAM: NADH-quinone oxidoreductase%2C chain I gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1630 Thein_1631 Thein_1631 Thein_1631 1693317 1693853 + NADH-ubiquinone/plastoquinone oxidoreductase chain 6 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J)~InterPro IPR001457~KEGG: ddf:DEFDS_1976 NADH-quinone oxidoreductase subunit J~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6~SPTR: NADH-quinone oxidoreductase%2C J subunit%3B~IMG reference gene:2505284953~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1631 Thein_1632 Thein_1632 Thein_1632 1693850 1694152 + NADH-ubiquinone oxidoreductase chain 4L COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)~InterPro IPR001133~KEGG: chl:Chy400_3144 NADH-ubiquinone oxidoreductase chain 4L~PFAM: NADH-ubiquinone oxidoreductase chain 4L~SPTR: Putative NADH dehydrogenase (Ubiquinone)%2C chain 4L%3B~IMG reference gene:2505284954~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1632 Thein_1633 Thein_1633 Thein_1633 1694156 1696108 + proton-translocating NADH-quinone oxidoreductase%2C chain L COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit~InterProIPR003916:IPR018393:IPR003945:IPR001516:IPR 001750~KEGG: dds:Ddes_1657 proton-translocating NADH-quinone oxidoreductase%2C chain L~PFAM: NADH/Ubiquinone/plastoquinone (complex I)%3B NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein~SPTR: Proton-translocating NADH-quinone oxidoreductase%2C chain L%3B~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain L~IMG reference gene:2505284955~PFAM: NADH-Ubiquinone oxidoreductase (complex I)%2C chain 5 C-terminus%3B NADH dehydrogenase subunit 5 C-terminus%3B NADH-Ubiquinone oxidoreductase (complex I)%2C chain 5 N-terminus%3B NADH-Ubiquinone/plastoquinone (complex I)%2C various chains~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain L gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1633 Thein_1634 Thein_1634 Thein_1634 1696121 1697665 + proton-translocating NADH-quinone oxidoreductase%2C chain M COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M)~InterPro IPR003918:IPR010227:IPR001750~KEGG: tye:THEYE_A0920 NADH-quinone oxidoreductase chain M~PFAM: NADH/Ubiquinone/plastoquinone (complex I)~SPTR: NADH-quinone oxidoreductase chain m%3B~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain M~IMG reference gene:2505284956~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains%3B NADH-ubiquinone oxidoreductase chain 4%2C amino terminus~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain M gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1634 Thein_1635 Thein_1635 Thein_1635 1697646 1699079 + proton-translocating NADH-quinone oxidoreductase%2C chain N COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N)~InterPro IPR003916:IPR010096:IPR001750~KEGG: ret:RHE_CH03735 NADH-ubiquinone oxidoreductase chain N protein~PFAM: NADH/Ubiquinone/plastoquinone (complex I)~SPTR: Putative proton-translocating NADH-quinone oxidoreductase%2C N subunit%3B~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain N~IMG reference gene:2505284957~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain N gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1635 Thein_1636 Thein_1636 Thein_1636 1699189 1700937 + AMP-dependent synthetase and ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR020845:IPR000873~KEGG: cce:Ccel_2472 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase and ligase~SPTR: Putative long-chain-fatty-acid CoA ligase%3B~IMG reference gene:2505284958~PFAM: AMP-binding enzyme gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1636 Thein_1637 Thein_1637 Thein_1637 1701086 1701487 + hypothetical protein KEGG: dak:DaAHT2_0705 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284959 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1637 Thein_1638 Thein_1638 Thein_1638 1701484 1702176 + alanine racemase domain protein COGs: COG0325 enzyme with a TIM-barrel fold~InterPro IPR011078:IPR001608~KEGG: pmx:PERMA_0107 pyridoxal phosphate enzyme%2C YggS family~PFAM: alanine racemase domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284960~PFAM: Alanine racemase%2C N-terminal domain~TIGRFAM: pyridoxal phosphate enzyme%2C YggS family gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1638 Thein_1639 Thein_1639 Thein_1639 1702257 1703024 - protein of unknown function DUF72 COGs: COG1801 conserved hypothetical protein~InterPro IPR002763~KEGG: pho:PH0152 hypothetical protein~PFAM: protein of unknown function DUF72~SPTR: Putative uncharacterized protein PH0152%3B~IMG reference gene:2505284961~PFAM: Protein of unknown function DUF72 gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1639 Thein_1640 Thein_1640 Thein_1640 1703121 1703570 + D-tyrosyl-tRNA(Tyr) deacylase COGs: COG1490 D-Tyr-tRNAtyr deacylase~InterPro IPR003732~KEGG: taf:THA_1655 dtd D-tyrosyl-tRNA(Tyr) deacylase~PFAM: D-tyrosyl-tRNA(Tyr) deacylase~SPTR: D-tyrosyl-tRNA(Tyr) deacylase%3B~TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase~IMG reference gene:2505284962~PFAM: D-Tyr-tRNA(Tyr) deacylase~TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1640 Thein_1641 Thein_1641 Thein_1641 1703570 1704385 + methyltransferase small COGs: COG2264 Ribosomal protein L11 methylase~InterPro IPR007848~KEGG: adg:Adeg_0609 ribosomal protein L11 methyltransferase~PFAM: methyltransferase small~SPTR: Ribosomal protein L11 methyltransferase%3B~IMG reference gene:2505284963~PFAM: Ribosomal protein L11 methyltransferase (PrmA) gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1641 Thein_1642 Thein_1642 Thein_1642 1704746 1705015 + ribosomal protein S15 COGs: COG0184 Ribosomal protein S15P/S13E~InterPro IPR005290:IPR000589~KEGG: ddf:DEFDS_1521 30S ribosomal protein S15~PFAM: ribosomal protein S15~SPTR: 30S ribosomal protein S15%3B~TIGRFAM: ribosomal protein S15~IMG reference gene:2505284964~PFAM: Ribosomal protein S15~TIGRFAM: ribosomal protein S15%2C bacterial/organelle gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1642 Thein_1643 Thein_1643 Thein_1643 1705096 1707222 + polyribonucleotide nucleotidyltransferase COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)~InterProIPR012162:IPR004087:IPR004088:IPR003029:IPR 001247:IPR015847:IPR015848:IPR018111~KEGG: sfu:Sfum_1234 polynucleotide phosphorylase/polyadenylase~PFAM: 3' exoribonuclease%3B Exoribonuclease%2C phosphorolytic domain 2%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%3B K Homology%2C type 1%2C subgroup%3B RNA binding S1 domain protein~PRIAM: Polyribonucleotide nucleotidyltransferase~SMART: KH domain protein~SPTR: Polyribonucleotide nucleotidyltransferase%3B~TIGRFAM: polyribonucleotide nucleotidyltransferase~IMG reference gene:2505284965~PFAM: KH domain%3B S1 RNA binding domain%3B 3' exoribonuclease family%2C domain 1%3B Polyribonucleotide nucleotidyltransferase%2C RNA binding domain%3B 3' exoribonuclease family%2C domain 2~TIGRFAM: polyribonucleotide nucleotidyltransferase gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1643 Thein_1644 Thein_1644 Thein_1644 1707840 1708313 + chemotaxis protein%2C CheX COGs: COG1406 inhibitor of MCP methylation homolog of CheC~KEGG: dat:HRM2_37370 CheX2~SPTR: CheX2%3B~IMG reference gene:2505284966 gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1644 Thein_1645 Thein_1645 Thein_1645 1708310 1708921 - NADPH-dependent FMN reductase COGs: COG0655 Multimeric flavodoxin WrbA~InterPro IPR005025~KEGG: dal:Dalk_3455 NADPH-dependent FMN reductase~PFAM: NADPH-dependent FMN reductase~SPTR: NADPH-dependent FMN reductase%3B~IMG reference gene:2505284967~PFAM: NADPH-dependent FMN reductase gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1645 Thein_1646 Thein_1646 Thein_1646 1708926 1709621 - ABC transporter related protein COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003593:IPR003439:IPR017871~KEGG: shc:Shell_0533 ABC transporter related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related protein%3B~IMG reference gene:2505284968~PFAM: ABC transporter gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1646 Thein_1647 Thein_1647 Thein_1647 1709602 1710396 - binding-protein-dependent transport systems inner membrane component COGs: COG0555 ABC-type sulfate transport system permease component~InterPro IPR000515~KEGG: pmo:Pmob_0378 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2505284969~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1647 Thein_1648 Thein_1648 Thein_1648 1710454 1711305 - pseudogene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1648 Thein_1649 Thein_1649 Thein_1649 1711373 1712314 + transposase IS4 family protein COGs: COG3039 Transposase and inactivated derivatives IS5 family~InterPro IPR002559~KEGG: cyn:Cyan7425_5319 transposase IS4 family protein~PFAM: transposase IS4 family protein~SPTR: Transposase%3B~IMG reference gene:2505284971~PFAM: Transposase DDE domain%3B Transposase domain (DUF772) gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1649 Thein_1650 Thein_1650 Thein_1650 1712463 1712666 - hypothetical protein KEGG: mfe:Mefer_0233 molybdate ABC transporter periplasmic substrate-binding protein~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2505284972 gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1650 Thein_1651 Thein_1651 Thein_1651 1713209 1714039 + beta-lactamase domain-containing protein COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II~KEGG: ppd:Ppro_1945 beta-lactamase domain-containing protein~SPTR: Beta-lactamase domain protein%3B~IMG reference gene:2505284973~PFAM: Metallo-beta-lactamase superfamily gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1651 Thein_1652 Thein_1652 Thein_1652 1714088 1714951 + ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439:IPR017871~KEGG: sfu:Sfum_1827 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505284974~PFAM: ABC transporter gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1652 Thein_1653 Thein_1653 Thein_1653 1714948 1715682 + ABC-2 type transporter InterPro IPR013526:IPR000412:IPR013525~KEGG: ppd:Ppro_1264 ABC-2 type transporter~PFAM: ABC-2 type transporter~SPTR: ABC-2 type transporter%3B~IMG reference gene:2505284975~PFAM: ABC-2 type transporter~TIGRFAM: ABC-2 type transporter%2C NodJ family gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1653 Thein_1654 Thein_1654 Thein_1654 1715679 1716299 - bacterio-opsin activator HTH domain protein COGs: COG1318 transcriptional regulator protein~KEGG: abi:Aboo_0950 bacterio-opsin activator HTH domain protein~SPTR: Bacterio-opsin activator HTH domain protein%3B~IMG reference gene:2505284976~TIGRFAM: probable regulatory domain gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1654 Thein_1655 Thein_1655 Thein_1655 1716458 1717441 + putative outer membrane protein COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold~KEGG: bth:BT_0584 putative outer membrane protein~SPTR: Putative outer membrane protein%3B~IMG reference gene:2505284977~PFAM: Metallo-beta-lactamase superfamily gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1655 Thein_1656 Thein_1656 Thein_1656 1717431 1719290 - para-aminobenzoate synthase%2C subunit I COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I~InterProIPR019999:IPR005802:IPR018300:IPR001202:IPR 015890:IPR001544~KEGG: dak:DaAHT2_0244 para-aminobenzoate synthase%2C subunit I~PFAM: Chorismate binding-like%3B aminotransferase class IV~SPTR: Para-aminobenzoate synthase%2C component I%3B~TIGRFAM: para-aminobenzoate synthase%2C subunit I~IMG reference gene:2505284978~PFAM: Aminotransferase class IV%3B chorismate binding enzyme~TIGRFAM: aminodeoxychorismate synthase%2C component I%2C bacterial clade gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1656 Thein_1657 Thein_1657 Thein_1657 1719696 1720577 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterProIPR010066:IPR003593:IPR003439:IPR017871:IPR 013563~KEGG: mac:MA3047 oligopeptide ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Oligopeptide ABC transporter%2C ATP-binding protein%3B~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~IMG reference gene:2505284979~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1657 Thein_1658 Thein_1658 Thein_1658 1720570 1721496 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR010066:IPR003593:IPR003439:IPR017871:IPR 013563~KEGG: mla:Mlab_0717 hypothetical protein~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Oligopeptide/dipeptide ABC transporter%2C ATPase subunit%3B~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~IMG reference gene:2505284980~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1658 Thein_1659 Thein_1659 Thein_1659 1721493 1722317 - binding-protein-dependent transport systems inner membrane component COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: kcr:Kcr_0931 ABC-type dipeptide/oligopeptide/nickel transport system%2C permease component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: ABC transporter%2C permease protein%3B~IMG reference gene:2505284981~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1659 Thein_1660 Thein_1660 Thein_1660 1722304 1723260 - binding-protein-dependent transport systems inner membrane component COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: dae:Dtox_0449 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: ABC transporter%2C permease protein%3B~IMG reference gene:2505284982~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1660 Thein_1661 Thein_1661 Thein_1661 1723655 1725187 - extracellular solute-binding protein family 5 COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: dae:Dtox_0450 extracellular solute-binding protein family 5~PFAM: extracellular solute-binding protein family 5~SPTR: Extracellular solute-binding protein family 5%3B~IMG reference gene:2505284983~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1661 Thein_1662 Thein_1662 Thein_1662 1725769 1727262 - histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR004358:IPR003594:IPR001789:IPR005467~KEGG: cau:Caur_1383 PAS sensor protein~PFAM: ATP-binding region ATPase domain protein%3B response regulator receiver~SMART: ATP-binding region ATPase domain protein%3B response regulator receiver~SPTR: PAS sensor protein%3B~IMG reference gene:2505284984~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1662 Thein_1663 Thein_1663 Thein_1663 1727458 1728609 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR003660~KEGG: dat:HRM2_43840 methyl-accepting chemotaxis protein~PFAM: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SMART: chemotaxis sensory transducer~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2505284985~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1663 Thein_1664 Thein_1664 Thein_1664 1729043 1729288 + hypothetical protein KEGG: pca:Pcar_1778 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284986~PFAM: Ribbon-helix-helix protein%2C copG family gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1664 Thein_1665 Thein_1665 Thein_1665 1729269 1729556 + hypothetical protein KEGG: pca:Pcar_1777 cytotoxic translational repressor of toxin-antitoxin stability system~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284987 gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1665 Thein_1666 Thein_1666 Thein_1666 1729556 1730113 + hypothetical protein COGs: COG1751 conserved hypothetical protein~InterPro IPR015074~KEGG: ctc:CTC01351 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284988~PFAM: Pyruvate kinase%2C alpha/beta domain gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1666 Thein_1667 Thein_1667 Thein_1667 1730114 1731382 - metal dependent phosphohydrolase COGs: COG2206 HD-GYP domain~InterPro IPR003607:IPR006674~KEGG: dvm:DvMF_0995 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal dependent phosphohydrolase%3B~IMG reference gene:2505284989~PFAM: HD domain gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1667 Thein_1668 Thein_1668 Thein_1668 1731516 1732688 - peptidase M24 COGs: COG0006 Xaa-Pro aminopeptidase~InterPro IPR000587:IPR000994~KEGG: dol:Dole_2186 peptidase M24~PFAM: peptidase M24%3B creatinase~SPTR: Peptidase M24%3B~IMG reference gene:2505284990~PFAM: Metallopeptidase family M24%3B Creatinase/Prolidase N-terminal domain gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1668 Thein_1669 Thein_1669 Thein_1669 1732675 1733631 - membrane-bound lytic murein transglycosylase B COGs: COG2951 Membrane-bound lytic murein transglycosylase B~KEGG: drt:Dret_1382 MltB~SPTR: MltB%3B~IMG reference gene:2505284991 gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1669 Thein_1670 Thein_1670 Thein_1670 1733631 1733987 - response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: cco:CCC13826_0386 two component transcriptional regulator~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2505284992~PFAM: Response regulator receiver domain gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1670 Thein_1671 Thein_1671 Thein_1671 1734248 1734868 + adenylylsulfate kinase COGs: COG0529 Adenylylsulfate kinase and related kinase~InterPro IPR002891~KEGG: ttr:Tter_0038 adenylylsulfate kinase~PFAM: adenylylsulfate kinase~PRIAM: Adenylyl-sulfate kinase~SPTR: Adenylyl-sulfate kinase%3B~TIGRFAM: adenylylsulfate kinase~IMG reference gene:2505284993~PFAM: Adenylylsulphate kinase~TIGRFAM: adenylylsulfate kinase (apsK) gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1671 Thein_1672 Thein_1672 Thein_1672 1734877 1736025 + glycosyl transferase%2C group 1 KEGG: dba:Dbac_2210 glycosyl transferase%2C group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2505284994 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1672 Thein_1673 Thein_1673 Thein_1673 1736236 1736439 + pseudogene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1673 Thein_1674 Thein_1674 Thein_1674 1736443 1737342 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: dps:DP0999 hypothetical protein~PFAM: Peptidase M23~SPTR: Peptidase M23B%3B~IMG reference gene:2505284996~PFAM: Peptidase family M23 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1674 Thein_1675 Thein_1675 Thein_1675 1737403 1738317 + ribosomal protein L11 methyltransferase COGs: COG2264 Ribosomal protein L11 methylase~InterPro IPR004498:IPR010456~KEGG: sat:SYN_02277 ribosomal protein L11 methyltransferase~PFAM: ribosomal L11 methyltransferase~SPTR: Ribosomal protein L11 methyltransferase%3B~TIGRFAM: ribosomal protein L11 methyltransferase~IMG reference gene:2505284997~PFAM: Ribosomal protein L11 methyltransferase (PrmA)~TIGRFAM: ribosomal protein L11 methyltransferase gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1675 Thein_1676 Thein_1676 Thein_1676 1738287 1739057 + protein of unknown function DUF558 COGs: COG1385 conserved hypothetical protein~InterPro IPR006700~KEGG: cth:Cthe_1319 hypothetical protein~PFAM: protein of unknown function DUF558~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505284998~PFAM: RNA methyltransferase~TIGRFAM: RNA methyltransferase%2C RsmE family gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1676 Thein_1677 Thein_1677 Thein_1677 1739093 1739962 + peptidase M48 Ste24p COGs: COG0501 Zn-dependent protease with chaperone function~InterPro IPR001915~KEGG: pmx:PERMA_0749 putative protease HtpX homolog~PFAM: peptidase M48 Ste24p~SPTR: Probable protease htpX homolog%3B~IMG reference gene:2505284999~PFAM: Peptidase family M48 gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1677 Thein_1678 Thein_1678 Thein_1678 1740128 1740991 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285000~PFAM: Transposase IS200 like gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1678 Thein_1679 Thein_1679 Thein_1679 1741110 1742177 + tetraacyldisaccharide 4'-kinase COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase~InterPro IPR003758~KEGG: gem:GM21_3412 tetraacyldisaccharide 4'-kinase~PFAM: Tetraacyldisaccharide-1-P 4'-kinase~PRIAM: Tetraacyldisaccharide 4'-kinase~SPTR: Tetraacyldisaccharide 4'-kinase%3B~TIGRFAM: tetraacyldisaccharide 4'-kinase~IMG reference gene:2505285001~PFAM: Tetraacyldisaccharide-1-P 4'-kinase~TIGRFAM: tetraacyldisaccharide 4'-kinase gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1679 Thein_1680 Thein_1680 Thein_1680 1742161 1742853 + sugar fermentation stimulation protein COGs: COG1489 DNA-binding protein stimulates sugar fermentation~InterPro IPR005224~KEGG: abi:Aboo_0871 sugar fermentation stimulation protein~PFAM: sugar fermentation stimulation protein~SPTR: Sugar fermentation stimulation protein%3B~TIGRFAM: sugar fermentation stimulation protein~manually curated~IMG reference gene:2505285002~PFAM: Sugar fermentation stimulation protein~TIGRFAM: sugar fermentation stimulation protein gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1680 Thein_1681 Thein_1681 Thein_1681 1742841 1744556 + hypothetical protein InterPro IPR022265:IPR019734:IPR013026~KEGG: sus:Acid_7234 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: hypothetical protein~IMG reference gene:2505285003~TIGRFAM: TIGR03790 family protein gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1681 Thein_1682 Thein_1682 Thein_1682 1744553 1745533 - UDP-glucose 4-epimerase COGs: COG1087 UDP-glucose 4-epimerase~InterPro IPR005886:IPR001509~KEGG: pmx:PERMA_2007 UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: UDP-glucose 4-epimerase%3B~TIGRFAM: UDP-glucose 4-epimerase~IMG reference gene:2505285004~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: UDP-glucose-4-epimerase gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1682 Thein_1683 Thein_1683 Thein_1683 1745726 1746700 - Porphobilinogen synthase COGs: COG0113 Delta-aminolevulinic acid dehydratase~InterPro IPR001731~KEGG: dak:DaAHT2_0346 porphobilinogen synthase~PFAM: delta-aminolevulinic acid dehydratase~PRIAM: Porphobilinogen synthase~SPTR: Porphobilinogen synthase%3B~IMG reference gene:2505285005~PFAM: Delta-aminolevulinic acid dehydratase gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1683 Thein_1684 Thein_1684 Thein_1684 1746799 1747956 + major facilitator superfamily MFS_1 COGs: COG2814 Arabinose efflux permease~InterPro IPR011701~KEGG: dat:HRM2_06810 putative membrane efflux protein (permease)~PFAM: major facilitator superfamily MFS_1~SPTR: Putative membrane efflux protein (Permease)%3B~IMG reference gene:2505285006~PFAM: Major Facilitator Superfamily gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1684 Thein_1685 Thein_1685 Thein_1685 1748249 1748644 + protein of unknown function UPF0047 COGs: COG0432 conserved hypothetical protein~InterPro IPR001602~KEGG: tye:THEYE_A0136 hypothetical protein~PFAM: protein of unknown function UPF0047~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285007~PFAM: Uncharacterised protein family UPF0047~TIGRFAM: secondary thiamine-phosphate synthase enzyme gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1685 Thein_1686 Thein_1686 Thein_1686 1748660 1749073 + single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR011344:IPR000424~KEGG: pca:Pcar_0643 ssDNA-binding protein~PFAM: single-strand binding protein/Primosomal replication protein n~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: single-strand binding protein~IMG reference gene:2505285008~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1686 Thein_1687 Thein_1687 Thein_1687 1749534 1752923 + SMC domain protein COGs: COG1196 Chromosome segregation ATPase~InterPro IPR003395~KEGG: csc:Csac_1621 chromosome segregation protein SMC~PFAM: SMC domain protein~SPTR: Condensin subunit Smc%3B~IMG reference gene:2505285009~PFAM: RecF/RecN/SMC N terminal domain gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1687 Thein_1688 Thein_1688 Thein_1688 1752959 1753405 - ribosomal protein L9 COGs: COG0359 Ribosomal protein L9~InterPro IPR020594:IPR020070:IPR020069~KEGG: sfu:Sfum_3185 ribosomal protein L9~PFAM: Ribosomal protein L9-like~SPTR: 50S ribosomal protein L9%3B~TIGRFAM: ribosomal protein L9~IMG reference gene:2505285010~PFAM: Ribosomal protein L9%2C N-terminal domain%3B Ribosomal protein L9%2C C-terminal domain~TIGRFAM: ribosomal protein L9 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1688 Thein_1689 Thein_1689 Thein_1689 1753416 1753691 - ribosomal protein S18 COGs: COG0238 Ribosomal protein S18~InterPro IPR001648~KEGG: dal:Dalk_0918 30S ribosomal protein S18~PFAM: ribosomal protein S18~SPTR: 30S ribosomal protein S18%3B~TIGRFAM: ribosomal protein S18~IMG reference gene:2505285011~PFAM: Ribosomal protein S18~TIGRFAM: ribosomal protein S18 gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1689 Thein_1690 Thein_1690 Thein_1690 1753703 1754026 - ribosomal protein S6 COGs: COG0360 Ribosomal protein S6~InterPro IPR000529:IPR020814~KEGG: sfu:Sfum_3188 ribosomal protein S6~PFAM: Ribosomal protein S6%2C bacterial-like~SPTR: 30S ribosomal protein S6%3B~TIGRFAM: ribosomal protein S6~IMG reference gene:2505285012~PFAM: Ribosomal protein S6~TIGRFAM: ribosomal protein S6 gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1690 Thein_1691 Thein_1691 Thein_1691 1754237 1754848 - non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family COGs: COG0127 Xanthosine triphosphate pyrophosphatase~InterPro IPR002637:IPR020922~KEGG: slp:Slip_2049 non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family~PFAM: Ham1 family protein~PRIAM: Nucleoside-triphosphatase~SPTR: Non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family%3B~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family~IMG reference gene:2505285014~PFAM: Ham1 family~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1691 Thein_1692 Thein_1692 Thein_1692 1754841 1755557 - ribonuclease PH COGs: COG0689 RNase PH~InterPro IPR002381:IPR018336:IPR001247:IPR015847~KEGG: gsu:GSU1795 ribonuclease PH~PFAM: 3' exoribonuclease%3B Exoribonuclease%2C phosphorolytic domain 2~PRIAM: tRNA nucleotidyltransferase~SPTR: Ribonuclease PH%3B~TIGRFAM: ribonuclease PH~IMG reference gene:2505285015~PFAM: 3' exoribonuclease family%2C domain 1%3B 3' exoribonuclease family%2C domain 2~TIGRFAM: ribonuclease PH gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1692 Thein_1693 Thein_1693 Thein_1693 1755968 1756861 - 4Fe-4S ferredoxin iron-sulfur binding domain protein COGs: COG0348 Polyferredoxin~InterPro IPR017896:IPR017900~KEGG: drt:Dret_1785 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2505285016 gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1693 Thein_1694 Thein_1694 Thein_1694 1756973 1757284 - protein of unknown function DUF77 COGs: COG0011 conserved hypothetical protein~InterPro IPR002767~KEGG: adg:Adeg_1578 protein of unknown function DUF77~PFAM: protein of unknown function DUF77~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285017~PFAM: Domain of unknown function DUF77~TIGRFAM: uncharacterized protein%2C MTH1187 family gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1694 Thein_1695 Thein_1695 Thein_1695 1757824 1758459 - nicotinate (nicotinamide) nucleotide adenylyltransferase COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase~InterPro IPR004821:IPR005248:IPR004820~KEGG: dal:Dalk_4127 nicotinate (nicotinamide) nucleotide adenylyltransferase~PFAM: cytidylyltransferase~PRIAM: Nicotinate-nucleotide adenylyltransferase~SPTR: Probable nicotinate-nucleotide adenylyltransferase%3B~TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain protein~IMG reference gene:2505285018~PFAM: Cytidylyltransferase~TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1695 Thein_1696 Thein_1696 Thein_1696 1758459 1759715 - gamma-glutamyl phosphate reductase COGs: COG0014 Gamma-glutamyl phosphate reductase~InterPro IPR000965:IPR012134:IPR020593~KEGG: dak:DaAHT2_1155 gamma-glutamyl phosphate reductase~PRIAM: Glutamate-5-semialdehyde dehydrogenase~SPTR: Gamma-glutamyl phosphate reductase%3B~TIGRFAM: gamma-glutamyl phosphate reductase~IMG reference gene:2505285019~PFAM: Aldehyde dehydrogenase family~TIGRFAM: gamma-glutamyl phosphate reductase gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1696 Thein_1697 Thein_1697 Thein_1697 1759726 1760487 - 5-carboxymethyl-2-hydroxymuconateDelta-isomerase COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway)~InterPro IPR002529~KEGG: chy:CHY_1812 fumarylacetoacetate hydrolase family protein~PFAM: fumarylacetoacetate (FAA) hydrolase~PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase~SPTR: Fumarylacetoacetate hydrolase family protein%3B~IMG reference gene:2505285020~PFAM: Fumarylacetoacetate (FAA) hydrolase family gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1697 Thein_1698 Thein_1698 Thein_1698 1760513 1761880 - DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterProIPR014001:IPR014021:IPR001650:IPR014014:IPR 011545~KEGG: ppd:Ppro_1374 DEAD/DEAH box helicase domain-containing protein~PFAM: DEAD/DEAH box helicase domain protein~SMART: DEAD-like helicase~SPTR: DEAD/DEAH box helicase domain protein%3B~IMG reference gene:2505285021~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1698 Thein_1699 Thein_1699 Thein_1699 1762073 1762549 + CheD COGs: COG1871 Chemotaxis protein%3B stimulates methylation of MCP protein~KEGG: sat:SYN_00969 chemotaxis protein that stimulates methylation of MCP proteins~SPTR: CheD%2C stimulates methylation of MCP proteins%3B~IMG reference gene:2505285022~PFAM: CheD gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1699 Thein_1700 Thein_1700 Thein_1700 1762543 1763400 + metal dependent phosphohydrolase COGs: COG1639 signal transduction protein~InterPro IPR006675:IPR003607:IPR013976~KEGG: dal:Dalk_0653 metal dependent phosphohydrolase~PFAM: Metal-dependent hydrolase HDOD~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal dependent phosphohydrolase%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505285023~PFAM: HDOD domain~TIGRFAM: uncharacterized domain HDIG gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1700 Thein_1701 Thein_1701 Thein_1701 1763384 1763638 - type III secretion exporter COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB~InterPro IPR006135~KEGG: tye:THEYE_A0020 flagellar biosynthetic protein FlhB~PFAM: type III secretion exporter~SPTR: Flagellar biosynthetic protein FlhB%3B~IMG reference gene:2505285024~PFAM: FlhB HrpN YscU SpaS Family~TIGRFAM: flhB C-terminus-related protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1701 Thein_1702 Thein_1702 Thein_1702 1763607 1765268 - ribonuclease%2C Rne/Rng family COGs: COG1530 Ribonuclease G and E~InterPro IPR004659:IPR003029:IPR019307~KEGG: dak:DaAHT2_2248 ribonuclease%2C Rne/Rng family~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B RNA binding S1 domain protein~SPTR: Ribonuclease E and G%3B~TIGRFAM: ribonuclease%2C Rne/Rng family~IMG reference gene:2505285025~PFAM: Ribonuclease E/G family%3B S1 RNA binding domain~TIGRFAM: ribonuclease%2C Rne/Rng family gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1702 Thein_1703 Thein_1703 Thein_1703 1765270 1765656 - molybdopterin biosynthesis MoaE protein InterPro IPR003448~KEGG: tye:THEYE_A0839 molybdopterin converting factor%2C subunit 2~PFAM: molybdopterin biosynthesis MoaE protein~SPTR: Protein involved in biosynthesis of molybdopterin%3B~IMG reference gene:2505285026~PFAM: MoaE protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1703 Thein_1704 Thein_1704 Thein_1704 1765693 1766058 - hypothetical protein KEGG: mxa:MXAN_5073 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285027 gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1704 Thein_1705 Thein_1705 Thein_1705 1766061 1766504 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR013026:IPR001440~KEGG: mar:MAE_03780 TPR repeat-containing protein~PFAM: Tetratricopeptide TPR_1 repeat-containing protein~SMART: Tetratricopeptide repeat~SPTR: Tetratricopeptide repeat protein%3B~IMG reference gene:2505285028~PFAM: Tetratricopeptide repeat gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1705 Thein_1706 Thein_1706 Thein_1706 1767116 1767244 + hypothetical protein IMG reference gene:2505285031 gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1706 Thein_1707 Thein_1707 Thein_1707 1767195 1767584 + Cytochrome c%2C class III%2C conserved region InterPro IPR002322:IPR011031:IPR020942~KEGG: tye:THEYE_A1056 cytochrome c3 chain A~PFAM: Cytochrome c%2C class III%2C conserved region~SPTR: Chain A%2C Cytochrome C3 From Desulfomicrobium Baculatus%3B~IMG reference gene:2505285032~PFAM: Class III cytochrome C family gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1707 Thein_1708 Thein_1708 Thein_1708 1767716 1769092 + RND efflux system%2C outer membrane lipoprotein%2C NodT family COGs: COG1538 Outer membrane protein~InterPro IPR010131:IPR003423~KEGG: dal:Dalk_1443 RND efflux system%2C outer membrane lipoprotein%2C NodT family~PFAM: outer membrane efflux protein~SPTR: RND efflux system%2C outer membrane lipoprotein%2C NodT family%3B~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT family~IMG reference gene:2505285033~PFAM: Outer membrane efflux protein~TIGRFAM: efflux transporter%2C outer membrane factor (OMF) lipoprotein%2C NodT family gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1708 Thein_1709 Thein_1709 Thein_1709 1769095 1770252 + efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: dal:Dalk_1444 efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~IMG reference gene:2505285034~PFAM: HlyD family secretion protein~TIGRFAM: RND family efflux transporter%2C MFP subunit gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1709 Thein_1710 Thein_1710 Thein_1710 1770249 1773353 + acriflavin resistance protein COGs: COG0841 Cation/multidrug efflux pump~InterPro IPR001036~KEGG: dal:Dalk_1445 acriflavin resistance protein~PFAM: acriflavin resistance protein~SPTR: Acriflavin resistance protein%3B~IMG reference gene:2505285035~PFAM: AcrB/AcrD/AcrF family gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1710 Thein_1711 Thein_1711 Thein_1711 1773394 1774353 - hypothetical protein KEGG: sfr:Sfri_2603 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285036 gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1711 Thein_1712 Thein_1712 Thein_1712 1774832 1777153 - ABC transporter related protein COGs: COG0178 Excinuclease ATPase subunit~InterPro IPR003593:IPR003439:IPR017871~KEGG: tye:THEYE_A1038 excinuclease ABC%2C A subunit~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Excinuclease ABC%2C A subunit%3B~IMG reference gene:2505285037~PFAM: ABC transporter gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1712 Thein_1713 Thein_1713 Thein_1713 1777172 1777687 - paREP15%2C putative coiled-coil protein KEGG: fpl:Ferp_1555 paREP15%2C putative coiled-coil protein~SPTR: Putative coiled-coil protein%3B~IMG reference gene:2505285038 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1713 Thein_1714 Thein_1714 Thein_1714 1777951 1779090 - oxygen-independent coproporphyrinogen III oxidase COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase~InterPro IPR004559:IPR006638:IPR007197:IPR010723~KEGG: slp:Slip_1654 oxygen-independent coproporphyrinogen III oxidase~PFAM: HemN domain protein%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Oxygen-independent coproporphyrinogen III oxidase%3B~TIGRFAM: oxygen-independent coproporphyrinogen III oxidase~IMG reference gene:2505285039~PFAM: Radical SAM superfamily%3B HemN C-terminal region~TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1714 Thein_1715 Thein_1715 Thein_1715 1779081 1780613 - 5-oxoprolinase (ATP-hydrolyzing) COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit~InterPro IPR003692~KEGG: rca:Rcas_1968 5-oxoprolinase (ATP-hydrolyzing)~PFAM: Hydantoinase B/oxoprolinase~PRIAM: 5-oxoprolinase (ATP-hydrolyzing)~SPTR: 5-oxoprolinase (ATP-hydrolyzing)%3B~IMG reference gene:2505285040~PFAM: Hydantoinase B/oxoprolinase gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1715 Thein_1716 Thein_1716 Thein_1716 1780614 1781303 - metal dependent phosphohydrolase COGs: COG1418 HD superfamily hydrolase~InterPro IPR006675:IPR003607:IPR006674~KEGG: dol:Dole_1644 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Metal dependent phosphohydrolase%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505285041~PFAM: HD domain~TIGRFAM: uncharacterized domain HDIG gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1716 Thein_1717 Thein_1717 Thein_1717 1781319 1784030 + DNA polymerase I COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains~InterProIPR002298:IPR018320:IPR002421:IPR008918:IPR 002562:IPR001098:IPR019760:IPR020046:IPR020047~KEGG: dal:Dalk_2747 DNA polymerase I~PFAM: DNA-directed DNA polymerase%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain%3B 3'-5' exonuclease~SMART: DNA-directed DNA polymerase%3B 5'-3' exonuclease%3B Helix-hairpin-helix domain protein class 2%3B 3'-5' exonuclease~SPTR: DNA polymerase I%3B~TIGRFAM: DNA polymerase I~IMG reference gene:2505285042~PFAM: 5'-3' exonuclease%2C C-terminal SAM fold%3B 3'-5' exonuclease%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B DNA polymerase family A~TIGRFAM: DNA polymerase I gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1717 Thein_1718 Thein_1718 Thein_1718 1784027 1784716 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: dak:DaAHT2_2549 type IV pilus assembly PilZ~PFAM: type IV pilus assembly PilZ~SPTR: Type IV pilus assembly PilZ%3B~IMG reference gene:2505285043~PFAM: PilZ domain gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1718 Thein_1719 Thein_1719 Thein_1719 1785034 1785756 - RNA methyltransferase%2C TrmH family%2C group 1 COGs: COG0565 rRNA methylase~InterPro IPR004384:IPR001537~KEGG: sfu:Sfum_1297 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase (SpoU)~SPTR: RNA methyltransferase%2C TrmH family%2C group 1%3B~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 1~IMG reference gene:2505285044~PFAM: SpoU rRNA Methylase family~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 1 gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1719 Thein_1720 Thein_1720 Thein_1720 1785798 1786781 - 3-oxoacyl-(acyl-carrier-protein) synthase III COGs: COG0332 3-oxoacyl-(acyl-carrier-protein)~InterPro IPR004655:IPR013751:IPR013747~KEGG: geo:Geob_2612 3-oxoacyl-(acyl-carrier-protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III~PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I~SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III%3B~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III~IMG reference gene:2505285045~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1720 Thein_1721 Thein_1721 Thein_1721 1786778 1787806 - fatty acid/phospholipid synthesis protein PlsX COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme~InterPro IPR012281:IPR003664~KEGG: dae:Dtox_1176 putative glycerol-3-phosphate acyltransferase PlsX~PFAM: fatty acid synthesis plsX protein~SPTR: Fatty acid synthesis plsX protein%3B~TIGRFAM: fatty acid/phospholipid synthesis protein PlsX~IMG reference gene:2505285046~PFAM: Fatty acid synthesis protein~TIGRFAM: fatty acid/phospholipid synthesis protein PlsX gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1721 Thein_1722 Thein_1722 Thein_1722 1787810 1787998 - ribosomal protein L32 COGs: COG0333 Ribosomal protein L32~InterPro IPR002677~KEGG: gur:Gura_1873 50S ribosomal protein L32~PFAM: ribosomal L32p protein~SPTR: LSU ribosomal protein L32P%3B~TIGRFAM: ribosomal protein L32~IMG reference gene:2505285047~PFAM: Ribosomal L32p protein family~TIGRFAM: ribosomal protein L32 gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1722 Thein_1723 Thein_1723 Thein_1723 1788027 1788581 - protein of unknown function DUF177 COGs: COG1399 metal-binding possibly nucleic acid-binding protein~InterPro IPR003772~KEGG: tye:THEYE_A1480 hypothetical protein~PFAM: protein of unknown function DUF177~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285048~PFAM: Uncharacterized ACR%2C COG1399 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1723 Thein_1724 Thein_1724 Thein_1724 1788768 1790039 - membrane protein involved in aromatic hydrocarbon degradation COGs: COG2067 Long-chain fatty acid transport protein~InterPro IPR005017~KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation~PFAM: membrane protein involved in aromatic hydrocarbon degradation~SPTR: Membrane protein involved in aromatic hydrocarbon degradation%3B~IMG reference gene:2505285049~PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1724 Thein_1725 Thein_1725 Thein_1725 1790303 1790575 + histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR000119:IPR020816~KEGG: plt:Plut_1957 histone-like DNA-binding protein~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein~SPTR: Histone-like bacterial DNA-binding protein%3B~IMG reference gene:2505285050~PFAM: Bacterial DNA-binding protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1725 Thein_1726 Thein_1726 Thein_1726 1790622 1790963 - hypothetical protein KEGG: dps:DP0127 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285051 gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1726 Thein_1727 Thein_1727 Thein_1727 1791156 1791281 + hypothetical protein IMG reference gene:2505285052 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1727 Thein_1728 Thein_1728 Thein_1728 1791329 1794310 - protein of unknown function DUF399 COGs: COG3016 Uncharacterized iron-regulated protein~InterPro IPR001478:IPR014782:IPR007314~KEGG: pmx:PERMA_0605 putative peptidase M1%2C membrane alanine aminopeptidase~PFAM: protein of unknown function DUF399%3B Peptidase M1 membrane alanine aminopeptidase %3B PDZ/DHR/GLGF domain protein~SMART: PDZ/DHR/GLGF domain protein~SPTR: Putative peptidase M1%2C membrane alanine aminopeptidase%3B~IMG reference gene:2505285053~PFAM: Protein of unknown function%2C DUF399%3B PDZ domain (Also known as DHR or GLGF) gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1728 Thein_1729 Thein_1729 Thein_1729 1794513 1794935 - hypothetical protein KEGG: mcc:721668 MAM domain containing 4~SPTR: Apical endosomal glycoprotein%3B~IMG reference gene:2505285054 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1729 Thein_1730 Thein_1730 Thein_1730 1795270 1795707 + CoA-binding domain protein COGs: COG1832 CoA-binding protein~InterPro IPR003781~KEGG: mta:Moth_2421 CoA-binding~PFAM: CoA-binding domain protein~SPTR: CoA-binding%3B~IMG reference gene:2505285055~PFAM: CoA binding domain gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1730 Thein_1731 Thein_1731 Thein_1731 1796176 1797507 - hypothetical protein KEGG: sfu:Sfum_0329 fibronectin%2C type III~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285056 gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1731 Thein_1732 Thein_1732 Thein_1732 1797523 1798062 - hypothetical protein InterPro IPR012902:IPR001120~KEGG: mpt:Mpe_A2942 fimbrial biogenesis protein~SPTR: Fimbrial biogenesis protein%3B~IMG reference gene:2505285057~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1732 Thein_1733 Thein_1733 Thein_1733 1798052 1798447 - hypothetical protein InterPro IPR012902~KEGG: emi:Emin_0584 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285058~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1733 Thein_1734 Thein_1734 Thein_1734 1798444 1798902 - N-terminal methylation COGs: COG4970 Tfp pilus assembly protein FimT~InterPro IPR012902~KEGG: mta:Moth_1549 N-terminal methylation~SPTR: N-terminal methylation%3B~IMG reference gene:2505285059~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1734 Thein_1735 Thein_1735 Thein_1735 1799436 1801934 - hypothetical protein KEGG: ppd:Ppro_2465 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285060 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1735 Thein_1736 Thein_1736 Thein_1736 1801941 1803752 - asparagine synthase COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing)~InterPro IPR001962~KEGG: mbu:Mbur_1580 asparagine synthase%2C glutamine-hydrolyzing~PFAM: asparagine synthase~SPTR: Glutamine amidotransferase class-II:Asparagine synthase%3B~IMG reference gene:2505285061~PFAM: Asparagine synthase gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1736 Thein_1737 Thein_1737 Thein_1737 1803754 1804713 - UbiA prenyltransferase COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase~InterPro IPR000537~KEGG: phe:Phep_1976 UbiA prenyltransferase~PFAM: UbiA prenyltransferase~SPTR: UbiA prenyltransferase%3B~IMG reference gene:2505285062~PFAM: UbiA prenyltransferase family gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1737 Thein_1738 Thein_1738 Thein_1738 1804710 1805156 - hypothetical protein KEGG: xla:378615 histone deacetylase 9~SPTR: Histone deacetylase 9%2C MITR protein%3B~IMG reference gene:2505285063 gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1738 Thein_1739 Thein_1739 Thein_1739 1805195 1805857 - Domain of unknown function DUF1814 InterPro IPR014942~KEGG: aae:aq_aa25 hypothetical protein~PFAM: Domain of unknown function DUF1814~SPTR: Uncharacterized protein aq_aa25%3B~IMG reference gene:2505285064~PFAM: Domain of unknown function (DUF1814) gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1739 Thein_1740 Thein_1740 Thein_1740 1805793 1806059 - hypothetical protein KEGG: taf:THA_599 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2505285065 gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1740 Thein_1741 Thein_1741 Thein_1741 1806019 1807332 - hypothetical protein KEGG: rca:Rcas_3087 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285066 gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1741 Thein_1742 Thein_1742 Thein_1742 1807479 1809029 - AAA-ATPase InterPro IPR018631:IPR012547~KEGG: saf:SULAZ_0155 conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain~PFAM: AAA-ATPase-like%3B protein of unknown function DUF1703~SPTR: Conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain%3B~IMG reference gene:2505285067~PFAM: Protein of unknown function (DUF1703)%3B Predicted AAA-ATPase gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1742 Thein_1743 Thein_1743 Thein_1743 1809147 1810796 - glycosyl transferase family 39 InterPro IPR003342~KEGG: cth:Cthe_2397 hypothetical protein~PFAM: glycosyl transferase family 39~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285068~PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1743 Thein_1744 Thein_1744 Thein_1744 1811088 1812011 - sulfotransferase InterPro IPR000863~KEGG: rxy:Rxyl_3105 sulfotransferase~PFAM: sulfotransferase~SPTR: Sulfotransferase%3B~IMG reference gene:2505285069~PFAM: Sulfotransferase domain gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1744 Thein_1745 Thein_1745 Thein_1745 1812004 1813413 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: pat:Patl_1191 glycosyl transferase%2C group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2505285070~PFAM: Glycosyl transferases group 1 gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1745 Thein_1746 Thein_1746 Thein_1746 1813397 1814677 - O-antigen polymerase InterPro IPR007016~KEGG: ppd:Ppro_2455 O-antigen polymerase~PFAM: O-antigen polymerase~SPTR: O-antigen polymerase%3B~IMG reference gene:2505285071~PFAM: O-Antigen ligase~TIGRFAM: probable O-glycosylation ligase%2C exosortase system type 1-associated gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1746 Thein_1747 Thein_1747 Thein_1747 1815024 1815311 - Excinuclease ABC C subunit domain protein COGs: COG2827 endonuclease containing a URI domain~InterPro IPR000305~KEGG: dol:Dole_2997 excinuclease ABC subunit C~PFAM: Excinuclease ABC C subunit domain protein~SMART: Excinuclease ABC C subunit domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285072~PFAM: GIY-YIG catalytic domain gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1747 Thein_1748 Thein_1748 Thein_1748 1815496 1815678 + hypothetical protein IMG reference gene:2505285073 gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1748 Thein_1749 Thein_1749 Thein_1749 1815675 1816643 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505285074~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1749 Thein_1750 Thein_1750 Thein_1750 1816842 1817957 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: tjr:TherJR_2108 glycosyl transferase group 1~PFAM: glycosyl transferase group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2505285075~PFAM: Glycosyl transferases group 1 gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1750 Thein_1751 Thein_1751 Thein_1751 1817938 1818945 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: dth:DICTH_0207 glycosyltransferase~PFAM: glycosyl transferase family 2~SPTR: Glycosyltransferase%3B~IMG reference gene:2505285076~PFAM: Glycosyl transferase family 2 gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1751 Thein_1752 Thein_1752 Thein_1752 1818947 1819828 - sulfotransferase InterPro IPR000863~KEGG: ter:Tery_4121 sulfotransferase~PFAM: sulfotransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285077~PFAM: Sulfotransferase domain gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1752 Thein_1753 Thein_1753 Thein_1753 1819831 1822062 - NAD-dependent epimerase/dehydratase COGs: COG0673 dehydrogenase and related protein~InterPro IPR000683:IPR001509~KEGG: mno:Mnod_5601 oxidoreductase domain protein~PFAM: NAD-dependent epimerase/dehydratase%3B oxidoreductase domain protein~SPTR: Oxidoreductase domain protein%3B~IMG reference gene:2505285078~PFAM: NAD dependent epimerase/dehydratase family%3B Oxidoreductase family%2C NAD-binding Rossmann fold gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1753 Thein_1754 Thein_1754 Thein_1754 1822055 1822990 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: ter:Tery_4771 glycosyl transferase family protein~PFAM: glycosyl transferase family 2~SPTR: Glycosyl transferase%2C family 2%3B~IMG reference gene:2505285079~PFAM: Glycosyl transferase family 2 gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1754 Thein_1755 Thein_1755 Thein_1755 1822990 1824436 - pseudogene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1755 Thein_1756 Thein_1756 Thein_1756 1824437 1825426 - hypothetical protein InterPro IPR000169~KEGG: rxy:Rxyl_2693 hypothetical protein~SPTR: Sulfotransferase%3B~IMG reference gene:2505285081~PFAM: Sulfotransferase domain gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1756 Thein_1757 Thein_1757 Thein_1757 1825414 1825626 - putative lipopolysaccharide biosynthesis protein KEGG: pdi:BDI_2788 putative lipopolysaccharide biosynthesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285082~PFAM: Polysaccharide biosynthesis protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1757 Thein_1758 Thein_1758 Thein_1758 1826385 1826609 - Protein of unknown function DUF2283 InterPro IPR019270~KEGG: sti:Sthe_3021 protein of unknown function DUF2283~PFAM: Protein of unknown function DUF2283~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285083~PFAM: Protein of unknown function (DUF2283) gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1758 Thein_1759 Thein_1759 Thein_1759 1826606 1826836 - pseudogene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1759 Thein_1760 Thein_1760 Thein_1760 1827236 1827484 + prevent-host-death family protein InterPro IPR006442~KEGG: ddf:DEFDS_0549 prevent-host-death family protein~SPTR: Prevent-host-death family protein%3B~TIGRFAM: prevent-host-death family protein~IMG reference gene:2505285085~PFAM: Phd_YefM~TIGRFAM: prevent-host-death family protein gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1760 Thein_1761 Thein_1761 Thein_1761 1827484 1827759 + plasmid stabilization system KEGG: ddf:DEFDS_0548 plasmid stabilization system~SPTR: Plasmid stabilization system%3B~IMG reference gene:2505285086~PFAM: Plasmid maintenance system killer protein~TIGRFAM: addiction module toxin%2C RelE/StbE family gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1761 Thein_1762 Thein_1762 Thein_1762 1828135 1829649 + Alkaline phosphatase COGs: COG1785 Alkaline phosphatase~InterPro IPR001952~KEGG: dsa:Desal_1742 alkaline phosphatase~PFAM: Alkaline phosphatase~SMART: Alkaline phosphatase~SPTR: Alkaline phosphatase%3B~IMG reference gene:2505285087~PFAM: Alkaline phosphatase gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1762 Thein_1763 Thein_1763 Thein_1763 1829718 1830863 + YibE/F family protein COGs: COG5438 multitransmembrane protein~InterPro IPR012507~KEGG: dsa:Desal_1743 YibE/F family protein~PFAM: YibE/F family protein~SPTR: YibE/F family protein%3B~IMG reference gene:2505285088~PFAM: YibE/F-like protein gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1763 Thein_1764 Thein_1764 Thein_1764 1831320 1832288 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505285090~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1764 Thein_1765 Thein_1765 Thein_1765 1832285 1832467 - hypothetical protein IMG reference gene:2505285091 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1765 Thein_1766 Thein_1766 Thein_1766 1832694 1834139 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR006675:IPR003607:IPR002646:IPR006674~KEGG: dak:DaAHT2_1316 polynucleotide adenylyltransferase/metal dependent phosphohydrolase~PFAM: Polynucleotide adenylyltransferase region%3B metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase%3B~TIGRFAM: metal dependent phophohydrolase~IMG reference gene:2505285092~PFAM: HD domain%3B Poly A polymerase head domain~TIGRFAM: uncharacterized domain HDIG gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1766 Thein_1767 Thein_1767 Thein_1767 1834193 1837219 + phosphoenolpyruvate carboxylase COGs: COG2352 Phosphoenolpyruvate carboxylase~InterPro IPR001449~KEGG: mno:Mnod_4503 phosphoenolpyruvate carboxylase~SPTR: Phosphoenolpyruvate carboxylase%3B~IMG reference gene:2505285093 gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1767 Thein_1768 Thein_1768 Thein_1768 1837608 1839374 + Cl- channel voltage-gated family protein COGs: COG0038 Chloride channel protein EriC~InterPro IPR001807:IPR000644~KEGG: drt:Dret_2453 Cl-channel voltage-gated family protein~PFAM: Cl- channel voltage-gated family protein%3B CBS domain containing protein~SPTR: Cl-channel voltage-gated family protein%3B~IMG reference gene:2505285094~PFAM: CBS domain%3B Voltage gated chloride channel gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1768 Thein_1769 Thein_1769 Thein_1769 1839374 1841116 + Cl- channel voltage-gated family protein COGs: COG0038 Chloride channel protein EriC~InterPro IPR001807:IPR000644~KEGG: aca:ACP_0460 chloride transporter%2C ClC family~PFAM: Cl- channel voltage-gated family protein%3B CBS domain containing protein~SMART: CBS domain containing protein~SPTR: Chloride transporter%2C ClC family%3B~IMG reference gene:2505285095~PFAM: CBS domain%3B Voltage gated chloride channel gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1769 Thein_1770 Thein_1770 Thein_1770 1841188 1842192 + PhoH family protein COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase~InterPro IPR003714~KEGG: pca:Pcar_1231 putative ATP-binding protein in pho regulon~PFAM: PhoH family protein~SPTR: Putative ATP-binding protein in pho regulon%3B~IMG reference gene:2505285096~PFAM: KH domain%3B PhoH-like protein gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1770 Thein_1771 Thein_1771 Thein_1771 1842189 1843223 + molybdopterin binding domain protein COGs: COG0303 Molybdopterin biosynthesis enzyme~InterPro IPR001453~KEGG: cbl:CLK_0402 putative molybdopterin binding protein~PFAM: molybdopterin binding domain~SPTR: Putative molybdopterin binding protein%3B~IMG reference gene:2505285097~PFAM: Probable molybdopterin binding domain gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1771 Thein_1772 Thein_1772 Thein_1772 1843239 1843535 + protein of unknown function YGGT InterPro IPR003425~KEGG: geo:Geob_1794 protein of unknown function YGGT~PFAM: protein of unknown function YGGT~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285098~PFAM: YGGT family gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1772 Thein_1773 Thein_1773 Thein_1773 1843540 1843989 + DivIVA domain protein InterPro IPR019933:IPR007793~KEGG: bcy:Bcer98_2545 DivIVA family protein~PFAM: DivIVA family protein~SPTR: Cell division initiation protein DivIVA%3B~TIGRFAM: DivIVA domain~IMG reference gene:2505285099~PFAM: DivIVA protein~TIGRFAM: DivIVA domain gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1773 Thein_1774 Thein_1774 Thein_1774 1843990 1844289 + protein of unknown function DUF167 COGs: COG1872 conserved hypothetical protein~InterPro IPR005228:IPR003746~KEGG: slp:Slip_0824 protein of unknown function DUF167~PFAM: protein of unknown function DUF167~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285100~PFAM: Uncharacterised ACR%2C YggU family COG1872~TIGRFAM: TIGR00251 family protein gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1774 Thein_1775 Thein_1775 Thein_1775 1844442 1845110 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG0637 phosphatase/phosphohexomutase~InterPro IPR005833:IPR006402:IPR006439:IPR005834~KEGG: rsd:TGRD_051 putative phosphatase/phosphohexomutase~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: Putative phosphatase/phosphohexomutase%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~IMG reference gene:2505285101~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1775 Thein_1776 Thein_1776 Thein_1776 1845110 1846036 + RNA methylase%2C NOL1/NOP2/sun family COGs: COG0144 tRNA and rRNA cytosine-C5-methylase~InterPro IPR011023:IPR018314:IPR001678~KEGG: mtp:Mthe_0282 NOL1/NOP2/sun family RNA methylase~PFAM: Fmu (Sun) domain protein~PRIAM: tRNA (cytosine-5-)-methyltransferase~SPTR: Ribosomal RNA methyltransferase NOP2%3B~TIGRFAM: RNA methylase%2C NOL1/NOP2/sun family~IMG reference gene:2505285102~PFAM: NOL1/NOP2/sun family~TIGRFAM: NOL1/NOP2/sun family putative RNA methylase gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1776 Thein_1777 Thein_1777 Thein_1777 1846036 1846509 + hypothetical protein KEGG: mtp:Mthe_0283 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285103 gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1777 Thein_1778 Thein_1778 Thein_1778 1846740 1847843 + coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit~InterPro IPR017896:IPR017900:IPR007516:IPR007525~KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit~PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein~SPTR: Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein%3B~IMG reference gene:2505285104~PFAM: Coenzyme F420 hydrogenase/dehydrogenase%2C beta subunit N-term%3B Coenzyme F420 hydrogenase/dehydrogenase%2C beta subunit C terminus gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1778 Thein_1779 Thein_1779 Thein_1779 1847877 1849892 + FAD dependent oxidoreductase COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterPro IPR017896:IPR017900:IPR006076~KEGG: apo:Arcpr_1555 4Fe-4S ferredoxin iron-sulfur binding domain protein~PFAM: FAD dependent oxidoreductase~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505285105~PFAM: 4Fe-4S binding domain gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1779 Thein_1780 Thein_1780 Thein_1780 1849903 1850424 + heterodisulfide reductase subunit C-like protein COGs: COG1150 Heterodisulfide reductase subunit C~InterPro IPR017896:IPR017900~KEGG: apo:Arcpr_1554 heterodisulfide reductase subunit C-like protein~SPTR: Heterodisulfide reductase subunit C%3B~IMG reference gene:2505285106~TIGRFAM: CoB--CoM heterodisulfide reductase%2C subunit C gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1780 Thein_1781 Thein_1781 Thein_1781 1850440 1851360 + CoB--CoM heterodisulfide reductase COGs: COG2048 Heterodisulfide reductase subunit B~InterPro IPR004017~KEGG: apo:Arcpr_1553 CoB--CoM heterodisulfide reductase~PFAM: protein of unknown function DUF224 cysteine-rich region domain protein~PRIAM: CoB--CoM heterodisulfide reductase~SPTR: CoB--CoM heterodisulfide reductase%3B~IMG reference gene:2505285107~PFAM: Cysteine-rich domain~TIGRFAM: CoB--CoM heterodisulfide reductase%2C subunit B gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1781 Thein_1782 Thein_1782 Thein_1782 1851363 1851773 + methyl-viologen-reducing hydrogenase delta subunit COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit~InterPro IPR003813~KEGG: tye:THEYE_A1367 methyl viologen-reducing hydrogenase%2C subunit delta~PFAM: methyl-viologen-reducing hydrogenase delta subunit~SPTR: Methyl viologen-reducing hydrogenase%2C subunit delta%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505285108~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1782 Thein_1783 Thein_1783 Thein_1783 1851795 1852754 + NADH ubiquinone oxidoreductase 20 kDa subunit COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit~InterPro IPR006137~KEGG: apo:Arcpr_1551 NADH ubiquinone oxidoreductase 20 kDa subunit~PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit~SPTR: F420-non-reducing hydrogenase iron-sulfur subunit G%3B~IMG reference gene:2505285109~PFAM: NADH ubiquinone oxidoreductase%2C 20 Kd subunit gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1783 Thein_1784 Thein_1784 Thein_1784 1852773 1854242 + nickel-dependent hydrogenase large subunit COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit~InterPro IPR001501~KEGG: apo:Arcpr_1550 nickel-dependent hydrogenase large subunit~PFAM: nickel-dependent hydrogenase large subunit~SPTR: Nickel-dependent hydrogenase large subunit%3B~IMG reference gene:2505285110~PFAM: Nickel-dependent hydrogenase gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1784 Thein_1785 Thein_1785 Thein_1785 1854496 1854963 + hydrogenase maturation protease COGs: COG0680 Ni Fe-hydrogenase maturation factor~InterPro IPR000671~KEGG: tye:THEYE_A1363 hydrogenase expression/formation protein~PFAM: peptidase M52 hydrogen uptake protein~SPTR: Hydrogenase maturation protease%3B~TIGRFAM: hydrogenase maturation protease~IMG reference gene:2505285111~PFAM: Hydrogenase maturation protease~TIGRFAM: hydrogenase maturation protease gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1785 Thein_1786 Thein_1786 Thein_1786 1855039 1855761 + hypothetical protein KEGG: ctl:CTLon_0690 putative oxidoreductase~SPTR: Putative oxidoreductase%3B~IMG reference gene:2505285112 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1786 Thein_1787 Thein_1787 Thein_1787 1855959 1857050 - NHL repeat containing protein InterPro IPR013017:IPR001258~KEGG: dak:DaAHT2_0764 NHL repeat containing protein~PFAM: NHL repeat containing protein~SPTR: NHL repeat containing protein%3B~IMG reference gene:2505285113~PFAM: SMP-30/Gluconolaconase/LRE-like region gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1787 Thein_1788 Thein_1788 Thein_1788 1857056 1858141 - doubled CXXCH domain protein InterPro IPR011031~KEGG: dak:DaAHT2_0394 doubled CXXCH domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285114~PFAM: Doubled CXXCH motif (Paired_CXXCH_1) gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1788 Thein_1789 Thein_1789 Thein_1789 1858192 1859280 - doubled CXXCH domain protein InterPro IPR011031~KEGG: dak:DaAHT2_0752 doubled CXXCH domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285115~PFAM: Doubled CXXCH motif (Paired_CXXCH_1) gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1789 Thein_1790 Thein_1790 Thein_1790 1859674 1861623 + hypothetical protein KEGG: dak:DaAHT2_0402 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285116 gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1790 Thein_1791 Thein_1791 Thein_1791 1861633 1862202 + hypothetical protein KEGG: dak:DaAHT2_0401 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285117~PFAM: Curli production assembly/transport component CsgG gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1791 Thein_1792 Thein_1792 Thein_1792 1862313 1863797 + hypothetical protein KEGG: dak:DaAHT2_0400 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285118 gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1792 Thein_1793 Thein_1793 Thein_1793 1863779 1864345 + hypothetical protein KEGG: dak:DaAHT2_0399 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285119 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1793 Thein_1794 Thein_1794 Thein_1794 1864315 1865985 + hypothetical protein KEGG: dak:DaAHT2_0398 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285120 gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1794 Thein_1795 Thein_1795 Thein_1795 1865966 1867909 + cytochrome C family protein InterPro IPR010177:IPR011031:IPR003006~KEGG: dak:DaAHT2_0397 cytochrome c family protein~SPTR: Cytochrome C family protein%3B~TIGRFAM: cytochrome C family protein~IMG reference gene:2505285121~PFAM: Doubled CXXCH motif (Paired_CXXCH_1)~TIGRFAM: doubled CXXCH domain gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1795 Thein_1796 Thein_1796 Thein_1796 1867906 1869090 + cytochrome C family protein InterPro IPR010177:IPR011031~KEGG: dak:DaAHT2_0396 cytochrome c family protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: cytochrome C family protein~IMG reference gene:2505285122~PFAM: Doubled CXXCH motif (Paired_CXXCH_1)~TIGRFAM: doubled CXXCH domain gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1796 Thein_1797 Thein_1797 Thein_1797 1869063 1869962 + NHL repeat containing protein InterPro IPR001258~KEGG: dak:DaAHT2_0395 NHL repeat containing protein~PFAM: NHL repeat containing protein~SPTR: NHL repeat containing protein%3B~IMG reference gene:2505285123 gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1797 Thein_1798 Thein_1798 Thein_1798 1870119 1871177 + doubled CXXCH domain protein KEGG: dak:DaAHT2_0752 doubled CXXCH domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285124~PFAM: Doubled CXXCH motif (Paired_CXXCH_1) gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1798 Thein_1799 Thein_1799 Thein_1799 1871116 1872504 + cytochrome C family protein InterPro IPR010177:IPR011031~KEGG: dak:DaAHT2_0390 cytochrome c family protein~SPTR: Cytochrome C family protein%3B~TIGRFAM: cytochrome C family protein~IMG reference gene:2505285125~PFAM: Doubled CXXCH motif (Paired_CXXCH_1)~TIGRFAM: doubled CXXCH domain gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1799 Thein_1800 Thein_1800 Thein_1800 1872495 1873826 + hypothetical protein COGs: COG3391 conserved hypothetical protein~KEGG: dak:DaAHT2_0393 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285126 gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1800 Thein_1801 Thein_1801 Thein_1801 1873847 1874905 + cytochrome C family protein InterPro IPR010177:IPR011031~KEGG: dak:DaAHT2_0749 doubled CXXCH domain protein~SPTR: Doubled CXXCH domain protein%3B~TIGRFAM: cytochrome C family protein~IMG reference gene:2505285127~PFAM: Doubled CXXCH motif (Paired_CXXCH_1)~TIGRFAM: doubled CXXCH domain gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1801 Thein_1802 Thein_1802 Thein_1802 1874918 1875445 + putative methyl-accepting chemotaxis sensory transducer KEGG: dak:DaAHT2_0388 putative methyl-accepting chemotaxis sensory transducer~SPTR: Putative methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2505285128 gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1802 Thein_1803 Thein_1803 Thein_1803 1875497 1875622 - pseudogene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1803 Thein_1804 Thein_1804 Thein_1804 1875778 1876566 - thiazole biosynthesis enzyme COGs: COG1635 Flavoprotein involved in thiazole biosynthesis~InterPro IPR003042:IPR002922~KEGG: mth:MTH1620 ribulose-1%2C5-biphosphate synthetase~SPTR: Thiazole biosynthesis enzyme%3B~TIGRFAM: thiazole biosynthesis enzyme~IMG reference gene:2505285130~PFAM: Thi4 family~TIGRFAM: thiazole biosynthesis enzyme gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1804 Thein_1805 Thein_1805 Thein_1805 1876632 1877498 - nicotinate-nucleotide pyrophosphorylase COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase~InterPro IPR004393:IPR002638~KEGG: dth:DICTH_0588 nicotinate-nucleotide pyrophosphorylase~PFAM: Quinolinate phosphoribosyl transferase~PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating)~SPTR: Nicotinate-nucleotide pyrophosphorylase%3B~TIGRFAM: nicotinate-nucleotide pyrophosphorylase~IMG reference gene:2505285131~PFAM: Quinolinate phosphoribosyl transferase%2C C-terminal domain%3B Quinolinate phosphoribosyl transferase%2C N-terminal domain~TIGRFAM: nicotinate-nucleotide pyrophosphorylase gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1805 Thein_1806 Thein_1806 Thein_1806 1877599 1878993 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR020441:IPR001789:IPR003593:IPR002078:IPR 002197~KEGG: dal:Dalk_0661 two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505285132~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain~TIGRFAM: Nif-specific regulatory protein gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1806 Thein_1807 Thein_1807 Thein_1807 1879137 1881167 + hypothetical protein InterPro IPR019734:IPR013026~KEGG: dak:DaAHT2_1194 tetratricopeptide TPR_4~SPTR: Tetratricopeptide TPR_4%3B~IMG reference gene:2505285133 gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1807 Thein_1808 Thein_1808 Thein_1808 1881167 1882465 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR020441:IPR003593:IPR002078:IPR001789:IPR 002197~KEGG: dak:DaAHT2_1192 two component%2C sigma54 specific%2C transcriptional regulator%2C fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505285134~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1808 Thein_1809 Thein_1809 Thein_1809 1882474 1882881 + flagellar basal-body rod protein FlgB COGs: COG1815 Flagellar basal body protein~InterPro IPR006300:IPR019776:IPR001444~KEGG: dak:DaAHT2_1191 flagellar basal-body rod protein FlgB~PFAM: flagellar basal body rod protein~SPTR: Flagellar basal-body rod protein FlgB%3B~TIGRFAM: flagellar basal-body rod protein FlgB~IMG reference gene:2505285135~PFAM: Flagella basal body rod protein~TIGRFAM: flagellar basal-body rod protein FlgB gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1809 Thein_1810 Thein_1810 Thein_1810 1882881 1883315 + flagellar basal-body rod protein FlgC COGs: COG1558 Flagellar basal body rod protein~InterPro IPR006299:IPR010930~KEGG: dak:DaAHT2_1190 flagellar basal-body rod protein FlgC~PFAM: protein of unknown function DUF1078 domain protein~SPTR: Flagellar basal-body rod protein FlgC%3B~TIGRFAM: flagellar basal-body rod protein FlgC~IMG reference gene:2505285136~PFAM: Flagella basal body rod protein%3B Domain of unknown function (DUF1078)~TIGRFAM: flagellar basal-body rod protein FlgC gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1810 Thein_1811 Thein_1811 Thein_1811 1883327 1883617 + flagellar hook-basal body complex subunit FliE COGs: COG1677 Flagellar hook-basal body protein~InterPro IPR001624~KEGG: tme:Tmel_1126 flagellar hook-basal body complex subunit FliE~PFAM: flagellar hook-basal body complex protein FliE~SPTR: Flagellar hook-basal body complex subunit FliE%3B~TIGRFAM: flagellar hook-basal body complex subunit FliE~IMG reference gene:2505285137~PFAM: Flagellar hook-basal body complex protein FliE~TIGRFAM: flagellar hook-basal body complex protein FliE gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1811 Thein_1812 Thein_1812 Thein_1812 1883630 1885243 + flagellar M-ring protein FliF COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein~InterPro IPR000067:IPR006182:IPR013556~KEGG: dsa:Desal_1153 flagellar M-ring protein FliF~PFAM: secretory protein YscJ/FliF family protein%3B Flagellar M-ring domain protein~SPTR: Flagellar M-ring protein FliF%3B~TIGRFAM: flagellar M-ring protein FliF~IMG reference gene:2505285138~PFAM: Flagellar M-ring protein C-terminal%3B Secretory protein of YscJ/FliF family~TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1812 Thein_1813 Thein_1813 Thein_1813 1885233 1886246 + flagellar motor switch protein FliG COGs: COG1536 Flagellar motor switch protein~InterPro IPR000090:IPR006668~KEGG: dak:DaAHT2_1187 flagellar motor switch protein FliG~PFAM: flagellar motor switch protein FliG%3B MgtE intracellular region~SPTR: Flagellar motor switch protein FliG%3B~TIGRFAM: flagellar motor switch protein FliG~IMG reference gene:2505285139~PFAM: FliG C-terminal domain~TIGRFAM: flagellar motor switch protein FliG gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1813 Thein_1814 Thein_1814 Thein_1814 1886233 1887075 + Flagellar assembly protein FliH/Type III secretion system HrpE COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein~InterPro IPR018035~KEGG: dal:Dalk_0669 flagellar assembly protein FliH~PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE~SPTR: Flagellar assembly protein FliH%3B~IMG reference gene:2505285140~PFAM: Flagellar assembly protein FliH gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1814 Thein_1815 Thein_1815 Thein_1815 1887056 1888366 + ATPase%2C FliI/YscN family COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase~InterProIPR005714:IPR003593:IPR020003:IPR004100:IPR 000194~KEGG: dak:DaAHT2_1185 flagellar protein export ATPase FliI~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein~SMART: AAA ATPase~SPTR: Flagellar protein export ATPase FliI%3B~TIGRFAM: ATPase%2C FliI/YscN family~IMG reference gene:2505285141~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: ATPase FliI/YscN family%3B flagellar protein export ATPase FliI gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1815 Thein_1816 Thein_1816 Thein_1816 1888363 1888803 + hypothetical protein KEGG: nth:Nther_1395 flagellar export protein FliJ~SPTR: Flagellar export protein FliJ%3B~IMG reference gene:2505285142~PFAM: Flagellar FliJ protein~TIGRFAM: flagellar export protein FliJ gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1816 Thein_1817 Thein_1817 Thein_1817 1888790 1889353 + MgtE intracellular region InterPro IPR006668~KEGG: lip:LI1061 hypothetical protein~PFAM: MgtE intracellular region~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2505285143~PFAM: MgtE intracellular N domain gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1817 Thein_1818 Thein_1818 Thein_1818 1889424 1890044 - hypothetical protein KEGG: dps:DP1766 molybdopterin-guanine dinucleotide biosynthesis protein B~SPTR: Related to molybdopterin-guanine dinucleotide biosynthesis protein B%3B~IMG reference gene:2505285144 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1818 Thein_1819 Thein_1819 Thein_1819 1890161 1891033 - formate dehydrogenase%2C gamma subunit COGs: COG2864 Cytochrome b subunit of formate dehydrogenase~InterPro IPR006471~KEGG: nam:NAMH_1309 formate dehydrogenase subunit C~SPTR: Formate dehydrogenase subunit C%3B~TIGRFAM: formate dehydrogenase%2C gamma subunit~IMG reference gene:2505285145~PFAM: Cytochrome b(N-terminal)/b6/petB~TIGRFAM: formate dehydrogenase%2C gamma subunit gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1819 Thein_1820 Thein_1820 Thein_1820 1891119 1891670 - formate dehydrogenase subunit beta COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR017896:IPR017900~KEGG: ddf:DEFDS_1330 formate dehydrogenase subunit beta~SPTR: Formate dehydrogenase%2C beta subunit%3B~IMG reference gene:2505285146~PFAM: 4Fe-4S binding domain gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1820 Thein_1821 Thein_1821 Thein_1821 1891726 1894482 - Nitrate reductase COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing~InterProIPR006311:IPR017909:IPR006655:IPR006963:IPR 006656:IPR006657~KEGG: ddf:DEFDS_1331 formate dehydrogenase subunit alpha~PFAM: molybdopterin oxidoreductase%3B molybdopterin oxidoreductase Fe4S4 region%3B molydopterin dinucleotide-binding region~PRIAM: Nitrate reductase~SPTR: Formate dehydrogenase%2C alpha subunit%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505285147~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain%3B Molybdopterin oxidoreductase Fe4S4 domain gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1821 Thein_1822 Thein_1822 Thein_1822 1894503 1894685 - hypothetical protein KEGG: ddf:DEFDS_1332 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285148~TIGRFAM: formate dehydrogenase region TAT target gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1822 Thein_1823 Thein_1823 Thein_1823 1894741 1895343 - hypothetical protein COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase~InterPro IPR001849~KEGG: ddf:DEFDS_1333 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285149~PFAM: Nitrate reductase delta subunit gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1823 Thein_1824 Thein_1824 Thein_1824 1895344 1897143 - polyferredoxin InterPro IPR017896:IPR017900~KEGG: dps:DP1772 polyferredoxins~SPTR: Related to polyferredoxins%3B~IMG reference gene:2505285150~PFAM: 4Fe-4S binding domain gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1824 Thein_1825 Thein_1825 Thein_1825 1897721 1898179 + hypothetical protein InterPro IPR010916~KEGG: cyc:PCC7424_5189 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285151~PFAM: Bacterial OB fold (BOF) protein gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1825 Thein_1826 Thein_1826 Thein_1826 1898176 1899084 - cation diffusion facilitator family transporter COGs: COG0053 Co/Zn/Cd cation transporter~InterPro IPR002524~KEGG: nis:NIS_1052 cation efflux protein~PFAM: cation efflux protein~SPTR: Cation efflux protein%3B~TIGRFAM: cation diffusion facilitator family transporter~IMG reference gene:2505285152~PFAM: Cation efflux family~TIGRFAM: cation diffusion facilitator family transporter gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1826 Thein_1827 Thein_1827 Thein_1827 1899513 1902113 - leucyl-tRNA synthetase COGs: COG0495 Leucyl-tRNA synthetase~InterPro IPR002302:IPR001412:IPR015413:IPR013155~KEGG: ddf:DEFDS_0790 leucyl-tRNA synthetase~PFAM: tRNA synthetase valyl/leucyl anticodon-binding%3B tRNA synthetase class I (M)~SPTR: Leucyl-tRNA synthetase%3B~TIGRFAM: leucyl-tRNA synthetase~IMG reference gene:2505285153~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain~TIGRFAM: leucyl-tRNA synthetase%2C eubacterial and mitochondrial family gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1827 Thein_1828 Thein_1828 Thein_1828 1902130 1903356 - isocitrate dehydrogenase%2C NADP-dependent COGs: COG0538 Isocitrate dehydrogenase~InterPro IPR004439:IPR019818:IPR001804~KEGG: hmo:HM1_1471 isocitrate dehydrogenase%2C nADP-dependent~PFAM: isocitrate/isopropylmalate dehydrogenase~PRIAM: Isocitrate dehydrogenase (NADP(+))~SPTR: Isocitrate dehydrogenase [NADP]%3B~TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent~IMG reference gene:2505285154~PFAM: Isocitrate/isopropylmalate dehydrogenase~TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent%2C prokaryotic type gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1828 Thein_1829 Thein_1829 Thein_1829 1903771 1904520 + band 7 protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001972:IPR001107:IPR018080~KEGG: cpc:Cpar_0824 band 7 protein~PFAM: band 7 protein~SMART: band 7 protein~SPTR: Band 7 protein%3B~IMG reference gene:2505285155~PFAM: SPFH domain / Band 7 family gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1829 Thein_1830 Thein_1830 Thein_1830 1904788 1905381 - hypothetical protein KEGG: nam:NAMH_0395 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285156 gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1830 Thein_1831 Thein_1831 Thein_1831 1905381 1906727 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR020441:IPR002078:IPR001789:IPR002197:IPR 003593~KEGG: pph:Ppha_1319 two component%2C sigma54 specific%2C transcriptional regulator%2C fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505285157~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1831 Thein_1832 Thein_1832 Thein_1832 1906708 1908234 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR004358:IPR003661:IPR003594:IPR005467~KEGG: pmx:PERMA_1548 sensor histidine kinase/response regulator~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Histidine kinase%3B~IMG reference gene:2505285158~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1832 Thein_1833 Thein_1833 Thein_1833 1908212 1908730 - hypothetical protein KEGG: dmo:Dmoj_GI16414 GI16414 gene product from transcript GI16414-RA~SPTR: GI16414%3B~IMG reference gene:2505285159 gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1833 Thein_1834 Thein_1834 Thein_1834 1908733 1909260 - hypothetical protein KEGG: kol:Kole_0653 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285160 gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1834 Thein_1835 Thein_1835 Thein_1835 1909743 1910417 - protein of unknown function DUF1614 COGs: COG4089 membrane protein~InterPro IPR011672~KEGG: sfu:Sfum_0878 hypothetical protein~PFAM: protein of unknown function DUF1614~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285161~PFAM: Protein of unknown function (DUF1614) gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1835 Thein_1836 Thein_1836 Thein_1836 1910407 1910829 - Uncharacterized protein family UPF0079%2C ATPase COGs: COG0802 ATPase or kinase~InterPro IPR003442~KEGG: lsa:LSA1342 hypothetical protein~PFAM: Uncharacterised protein family UPF0079%2C ATPase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285162~PFAM: Uncharacterised P-loop hydrolase UPF0079~TIGRFAM: ATPase%2C YjeE family gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1836 Thein_1837 Thein_1837 Thein_1837 1910816 1912384 - carbohydrate kinase%2C YjeF related protein COGs: COG0063 sugar kinase~InterPro IPR017953:IPR004443:IPR000631~KEGG: adg:Adeg_1759 carbohydrate kinase%2C YjeF related protein~PFAM: YjeF-family domain-containing protein%3B protein of unknown function UPF0031~SPTR: Carbohydrate kinase%2C YjeF related protein%3B~TIGRFAM: carbohydrate kinase%2C YjeF related protein~IMG reference gene:2505285163~PFAM: YjeF-related protein N-terminus%3B Carbohydrate kinase~TIGRFAM: yjeF N-terminal region%3B yjeF C-terminal region%2C hydroxyethylthiazole kinase-related gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1837 Thein_1838 Thein_1838 Thein_1838 1912424 1913794 - tRNA(Ile)-lysidine synthetase COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~InterPro IPR011063:IPR015262:IPR012795:IPR012796~KEGG: tye:THEYE_A0896 tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase)~PFAM: PP-loop domain protein%3B Protein of unkown function DUF1946 PP-loop ATpase~SPTR: tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase) (TRNA(Ile)-2-lysyl-cytidine synthase)%3B~TIGRFAM: tRNA(Ile)-lysidine synthetase~manually curated~IMG reference gene:2505285164~PFAM: TilS substrate C-terminal domain%3B PP-loop family~TIGRFAM: tRNA(Ile)-lysidine synthetase%2C C-terminal domain%3B tRNA(Ile)-lysidine synthetase%2C N-terminal domain gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1838 Thein_1839 Thein_1839 Thein_1839 1913775 1914497 - hypothetical protein KEGG: dak:DaAHT2_0213 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285165 gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1839 Thein_1840 Thein_1840 Thein_1840 1914532 1915512 + cobalamin biosynthesis protein CobD COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB~InterPro IPR004485~KEGG: dal:Dalk_0457 cobalamin biosynthesis protein CobD~PFAM: cobalamin biosynthesis protein CbiB~SPTR: Cobalamin biosynthesis protein CobD%3B~TIGRFAM: cobalamin biosynthesis protein CobD~IMG reference gene:2505285166~PFAM: CobD/Cbib protein~TIGRFAM: cobalamin biosynthesis protein CobD gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1840 Thein_1841 Thein_1841 Thein_1841 1915443 1916486 + nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase COGs: COG2038 NaMN:DMB phosphoribosyltransferase~InterPro IPR017846:IPR003200~KEGG: gem:GM21_3897 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase~PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase~PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase~SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase%3B~TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase~manually curated~IMG reference gene:2505285167~PFAM: Phosphoribosyltransferase~TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1841 Thein_1842 Thein_1842 Thein_1842 1916486 1917217 + cobalamin-5-phosphate synthase CobS COGs: COG0368 Cobalamin-5-phosphate synthase~InterPro IPR003805:IPR000463~KEGG: mif:Metin_0804 cobalamin 5'-phosphate synthase~PFAM: cobalamin-5-phosphate synthase CobS~SPTR: Cobalamin 5'-phosphate synthase%3B~IMG reference gene:2505285168~PFAM: Cobalamin-5-phosphate synthase~TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1842 Thein_1843 Thein_1843 Thein_1843 1917302 1917862 + peptidase zinc-dependent COGs: COG1913 Zn-dependent protease~InterPro IPR012091:IPR012962~KEGG: dth:DICTH_1693 hypothetical protein~PFAM: peptidase zinc-dependent~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285169~PFAM: Peptidase family M54 gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1843 Thein_1844 Thein_1844 Thein_1844 1917859 1918689 + glutamate racemase COGs: COG0796 Glutamate racemase~InterPro IPR004391:IPR018187:IPR015942~KEGG: dal:Dalk_5046 glutamate racemase~PFAM: Asp/Glu/hydantoin racemase~PRIAM: Glutamate racemase~SPTR: Glutamate racemase%3B~TIGRFAM: glutamate racemase~IMG reference gene:2505285170~PFAM: Asp/Glu/Hydantoin racemase~TIGRFAM: glutamate racemase gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1844 Thein_1845 Thein_1845 Thein_1845 1918777 1919253 + flavin reductase domain protein FMN-binding protein COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family~InterPro IPR002563~KEGG: tme:Tmel_1752 flavin reductase domain-containing protein~PFAM: flavin reductase domain protein FMN-binding~SPTR: Flavin reductase domain protein%2C FMN-binding%3B~IMG reference gene:2505285171~PFAM: Flavin reductase like domain gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1845 Thein_1846 Thein_1846 Thein_1846 1919253 1919915 + hypothetical protein InterPro IPR013026~KEGG: dal:Dalk_1963 TPR repeat-containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285172~PFAM: Pilin accessory protein (PilO) gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1846 Thein_1847 Thein_1847 Thein_1847 1920104 1920793 + Protein of unknown function DUF2202 COGs: COG4902 conserved hypothetical protein~InterPro IPR019243~KEGG: mfs:MFS40622_1425 protein of unknown function DUF2202~PFAM: Protein of unknown function DUF2202~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285173~PFAM: Uncharacterized protein domain (DUF2202) gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1847 Thein_1848 Thein_1848 Thein_1848 1920870 1921688 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: rrs:RoseRS_3963 ribokinase-like domain-containing protein~PFAM: PfkB domain protein~SPTR: PfkB domain protein%3B~IMG reference gene:2505285174~PFAM: pfkB family carbohydrate kinase gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1848 Thein_1849 Thein_1849 Thein_1849 1921760 1922749 + ketol-acid reductoisomerase COGs: COG0059 Ketol-acid reductoisomerase~InterPro IPR013116:IPR000506:IPR013023~KEGG: dds:Ddes_1905 ketol-acid reductoisomerase~PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein%3B acetohydroxy acid isomeroreductase~PRIAM: Ketol-acid reductoisomerase~SPTR: Ketol-acid reductoisomerase%3B~TIGRFAM: ketol-acid reductoisomerase~IMG reference gene:2505285175~PFAM: Acetohydroxy acid isomeroreductase%2C catalytic domain~TIGRFAM: ketol-acid reductoisomerase gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1849 Thein_1850 Thein_1850 Thein_1850 1922963 1923601 + Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: dat:HRM2_01380 UbiE2~PFAM: Methyltransferase type 11~SPTR: UbiE2%3B~IMG reference gene:2505285176~PFAM: ubiE/COQ5 methyltransferase family gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1850 Thein_1851 Thein_1851 Thein_1851 1924162 1924653 + transcriptional regulator%2C CarD family COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD~InterPro IPR003711~KEGG: sfu:Sfum_3655 CarD family transcriptional regulator~PFAM: transcription factor CarD~SPTR: Transcriptional regulator%2C CarD family%3B~IMG reference gene:2505285178~PFAM: CarD-like/TRCF domain gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1851 Thein_1852 Thein_1852 Thein_1852 1924657 1925691 + PilT protein domain protein COGs: COG4956 Integral membrane protein (PIN domain superfamily)~InterPro IPR002716:IPR002792:IPR006596~KEGG: sfu:Sfum_3656 PilT domain-containing protein~PFAM: PilT protein domain protein%3B deoxyribonuclease/rho motif-related TRAM~SMART: Nucleotide binding protein PINc~SPTR: PilT protein domain protein%3B~IMG reference gene:2505285179~PFAM: TRAM domain%3B PIN domain gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1852 Thein_1853 Thein_1853 Thein_1853 1925688 1926917 - molybdenum cofactor synthesis domain protein COGs: COG0303 Molybdopterin biosynthesis enzyme~InterProIPR008284:IPR005110:IPR001453:IPR005111:IPR 020817~KEGG: pth:PTH_2617 molybdopterin biosynthesis enzyme~PFAM: MoeA domain protein domain I and II%3B molybdopterin binding domain%3B MoeA domain protein domain IV~SPTR: Molybdopterin biosynthesis enzyme%3B~TIGRFAM: molybdenum cofactor synthesis domain protein~IMG reference gene:2505285180~PFAM: Probable molybdopterin binding domain%3B MoeA N-terminal region (domain I and II)%3B MoeA C-terminal region (domain IV)~TIGRFAM: molybdenum cofactor synthesis domain gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1853 Thein_1854 Thein_1854 Thein_1854 1927056 1928327 + 3-isopropylmalate dehydratase%2C large subunit COGs: COG0065 3-isopropylmalate dehydratase large subunit~InterProIPR001030:IPR011826:IPR018136:IPR011823:IPR 006251~KEGG: pfu:PF0938 3-isopropylmalate dehydratase large subunit~PFAM: aconitate hydratase domain-containing protein~SPTR: 3-isopropylmalate dehydratase large subunit 1%3B~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit%3B 3-isopropylmalate dehydratase%3B homoaconitate hydratase family protein~IMG reference gene:2505285181~PFAM: Aconitase family (aconitate hydratase)~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit%3B homoaconitate hydratase family protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1854 Thein_1855 Thein_1855 Thein_1855 1928352 1928864 + 3-isopropylmalate dehydratase%2C small subunit COGs: COG0066 3-isopropylmalate dehydratase small subunit~InterPro IPR000573:IPR011824:IPR011827~KEGG: pth:PTH_0533 3-isopropylmalate dehydratase small subunit~PFAM: aconitate hydratase domain-containing protein~SPTR: 3-isopropylmalate dehydratase small subunit%3B~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit~IMG reference gene:2505285182~PFAM: Aconitase C-terminal domain~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1855 Thein_1856 Thein_1856 Thein_1856 1929368 1930405 - inner-membrane translocator COGs: COG4177 ABC-type branched-chain amino acid transport system permease component~InterPro IPR001851~KEGG: mfe:Mefer_0491 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2505285185~PFAM: Branched-chain amino acid transport system / permease component gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1856 Thein_1857 Thein_1857 Thein_1857 1930411 1931319 - inner-membrane translocator COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components~InterPro IPR001851~KEGG: mfs:MFS40622_0662 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2505285186~PFAM: Branched-chain amino acid transport system / permease component gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1857 Thein_1858 Thein_1858 Thein_1858 1931341 1932054 - ABC transporter related protein COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003439:IPR003593~KEGG: mvu:Metvu_0680 ABC transporter releated protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Probable branched-chain amino acid transport ATP-binding protein livF%3B~IMG reference gene:2505285187~PFAM: ABC transporter gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1858 Thein_1859 Thein_1859 Thein_1859 1932060 1932848 - ABC transporter related protein COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: mvu:Metvu_0681 ABC transporter releated protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter releated protein%3B~IMG reference gene:2505285188~PFAM: ABC transporter gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1859 Thein_1860 Thein_1860 Thein_1860 1932858 1934096 - Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828~KEGG: mfs:MFS40622_0666 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2505285189~PFAM: Receptor family ligand binding region gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1860 Thein_1861 Thein_1861 Thein_1861 1934185 1935420 - Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828~KEGG: mfs:MFS40622_0666 extracellular ligand-binding receptor~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2505285190~PFAM: Receptor family ligand binding region gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1861 Thein_1862 Thein_1862 Thein_1862 1936149 1938551 + ATP-dependent protease La COGs: COG0466 ATP-dependent Lon protease~InterProIPR001984:IPR008268:IPR003111:IPR003959:IPR 003593:IPR004815~KEGG: dak:DaAHT2_2246 ATP-dependent protease La~PFAM: peptidase S16 lon domain protein%3B AAA ATPase central domain protein~PRIAM: Endopeptidase La~SMART: peptidase S16 lon domain protein%3B AAA ATPase~SPTR: ATP-dependent protease La%3B~TIGRFAM: ATP-dependent protease La~IMG reference gene:2505285191~PFAM: ATP-dependent protease La (LON) domain%3B ATPase family associated with various cellular activities (AAA)%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: lon-related putative ATP-dependent protease%3B ATP-dependent protease La gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1862 Thein_1863 Thein_1863 Thein_1863 1938608 1939417 - ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: gbm:Gbem_3532 ABC-3 protein~PFAM: ABC-3 protein~SPTR: ABC-3 protein%3B~IMG reference gene:2505285192~PFAM: ABC 3 transport family gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1863 Thein_1864 Thein_1864 Thein_1864 1939417 1940160 - ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: bcr:BCAH187_A4415 putative cation ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: High-affinity zinc uptake system ATP-binding protein znuC%3B~IMG reference gene:2505285193~PFAM: ABC transporter gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1864 Thein_1865 Thein_1865 Thein_1865 1940165 1940722 - protein of unknown function DUF1282 InterPro IPR009698~KEGG: swi:Swit_3224 hypothetical protein~PFAM: protein of unknown function DUF1282~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285194~PFAM: Yip1 domain gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1865 Thein_1866 Thein_1866 Thein_1866 1940719 1941123 - NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR020476:IPR020084:IPR000086~KEGG: tel:tll1077 adenine glycosylase~PFAM: NUDIX hydrolase~SPTR: Adenine glycosylase%3B~IMG reference gene:2505285195~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1866 Thein_1867 Thein_1867 Thein_1867 1941123 1942445 - adenylosuccinate lyase COGs: COG0015 Adenylosuccinate lyase~InterProIPR000362:IPR003031:IPR020557:IPR019468:IPR 004769~KEGG: geo:Geob_2894 adenylosuccinate lyase~PFAM: fumarate lyase%3B Adenylosuccinate lyase-like~SPTR: Adenylosuccinate lyase%3B~TIGRFAM: adenylosuccinate lyase~IMG reference gene:2505285196~PFAM: Lyase%3B Adenylosuccinate lyase C-terminus~TIGRFAM: adenylosuccinate lyase gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1867 Thein_1868 Thein_1868 Thein_1868 1942533 1943159 + tRNA guanosine-2'-O-methyltransferase COGs: COG0566 rRNA methylase~InterPro IPR001537~KEGG: aae:aq_1661 rRNA methylase SpoU~PFAM: tRNA/rRNA methyltransferase (SpoU)~PRIAM: tRNA guanosine-2'-O-methyltransferase~SPTR: tRNA guanosine-2'-O-methyltransferase%3B~IMG reference gene:2505285197~PFAM: SpoU rRNA Methylase family gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1868 Thein_1869 Thein_1869 Thein_1869 1943156 1944094 + pseudouridine synthase%2C RluA family COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006224:IPR002942:IPR006145:IPR006225~KEGG: adg:Adeg_1604 pseudouridine synthase%2C RluA family~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: Pseudouridine synthase%3B~TIGRFAM: pseudouridine synthase%2C RluA family~IMG reference gene:2505285198~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase%2C RluA family gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1869 Thein_1870 Thein_1870 Thein_1870 1944084 1944785 - hypothetical protein KEGG: sul:SYO3AOP1_0621 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285199 gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1870 Thein_1871 Thein_1871 Thein_1871 1944869 1945456 + dephospho-CoA kinase COGs: COG0237 Dephospho-CoA kinase~InterPro IPR001977~KEGG: dtu:Dtur_0883 dephospho-CoA kinase~PFAM: Dephospho-CoA kinase~SPTR: Dephospho-CoA kinase%3B~TIGRFAM: dephospho-CoA kinase~IMG reference gene:2505285200~PFAM: Dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1871 Thein_1872 Thein_1872 Thein_1872 1945443 1946675 + molybdenum cofactor synthesis domain protein COGs: COG0303 Molybdopterin biosynthesis enzyme~InterPro IPR005110:IPR001453:IPR005111:IPR020817~KEGG: sat:SYN_02148 molybdopterin biosynthesis MoeA protein~PFAM: MoeA domain protein domain I and II%3B molybdopterin binding domain%3B MoeA domain protein domain IV~SPTR: Molybdopterin biosynthesis MoeA protein%3B~TIGRFAM: molybdenum cofactor synthesis domain protein~IMG reference gene:2505285201~PFAM: Probable molybdopterin binding domain%3B MoeA N-terminal region (domain I and II)%3B MoeA C-terminal region (domain IV)~TIGRFAM: molybdenum cofactor synthesis domain gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1872 Thein_1873 Thein_1873 Thein_1873 1946872 1947402 + Cupin 2 conserved barrel domain protein InterPro IPR001387:IPR013096~KEGG: gur:Gura_0980 XRE family transcriptional regulator~PFAM: Cupin 2 conserved barrel domain protein%3B helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2505285202~PFAM: Cupin domain%3B Helix-turn-helix gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1873 Thein_1874 Thein_1874 Thein_1874 1947425 1947862 + S-adenosylmethionine decarboxylase proenzyme COGs: COG1586 S-adenosylmethionine decarboxylase~InterPro IPR003826:IPR017716~KEGG: sfu:Sfum_0720 S-adenosylmethionine decarboxylase related~PFAM: S-adenosylmethionine decarboxylase related~SPTR: Adenosylmethionine decarboxylase proenzyme%3B~TIGRFAM: S-adenosylmethionine decarboxylase proenzyme~IMG reference gene:2505285203~PFAM: S-adenosylmethionine decarboxylase~TIGRFAM: S-adenosylmethionine decarboxylase proenzyme%2C Bacillus form gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1874 Thein_1875 Thein_1875 Thein_1875 1947900 1948769 + agmatinase COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family~InterPro IPR020855:IPR006035:IPR005925~KEGG: sfu:Sfum_0721 putative agmatinase~PFAM: Arginase/agmatinase/formiminoglutamase~SPTR: Agmatinase%3B~TIGRFAM: agmatinase~IMG reference gene:2505285204~PFAM: Arginase family~TIGRFAM: agmatinase gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1875 Thein_1876 Thein_1876 Thein_1876 1948926 1949990 - histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR004358:IPR003661:IPR003594:IPR005467~KEGG: drm:Dred_1311 sensory histidine kinase AtoS~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Signal transduction histidine-protein kinase atoS%3B~IMG reference gene:2505285206~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1876 Thein_1877 Thein_1877 Thein_1877 1950128 1951339 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase~InterPro IPR016299:IPR000926:IPR000422~KEGG: tye:THEYE_A0208 riboflavin biosynthesis protein RibA~PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase%3B GTP cyclohydrolase II~SPTR: Riboflavin biosynthesis protein RibA%3B~TIGRFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%3B GTP cyclohydrolase II~IMG reference gene:2505285207~PFAM: GTP cyclohydrolase II%3B 3%2C4-dihydroxy-2-butanone 4-phosphate synthase~TIGRFAM: GTP cyclohydrolase II%3B 3%2C4-dihydroxy-2-butanone 4-phosphate synthase gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1877 Thein_1878 Thein_1878 Thein_1878 1951351 1951821 + 6%2C7-dimethyl-8-ribityllumazine synthase COGs: COG0054 Riboflavin synthase beta-chain~InterPro IPR002180~KEGG: adg:Adeg_1979 6%2C7-dimethyl-8-ribityllumazine synthase~PFAM: 67-dimethyl-8-ribityllumazine synthase~SPTR: 6%2C7-dimethyl-8-ribityllumazine synthase%3B~TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~IMG reference gene:2505285208~PFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1878 Thein_1879 Thein_1879 Thein_1879 1951821 1952240 + NusB antitermination factor COGs: COG0781 Transcription termination factor~InterPro IPR006027:IPR011605~KEGG: dal:Dalk_3316 NusB antitermination factor~PFAM: NusB/RsmB/TIM44~SPTR: N utilization substance protein B homolog%3B~TIGRFAM: transcription antitermination factor NusB~IMG reference gene:2505285209~PFAM: NusB family~TIGRFAM: transcription antitermination factor NusB gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1879 Thein_1880 Thein_1880 Thein_1880 1952233 1953168 - hypothetical protein InterPro IPR019734:IPR013026~KEGG: pfh:PFHG_03301 conserved hypothetical protein~SPTR: Pterin-4-alpha-carbinolamine dehydratase family protein%3B~IMG reference gene:2505285210 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1880 Thein_1881 Thein_1881 Thein_1881 1953165 1954643 - type II and III secretion system protein COGs: COG1450 Type II secretory pathway component PulD~InterPro IPR001775:IPR004846~KEGG: pmx:PERMA_0972 putative pilus~PFAM: type II and III secretion system protein~SPTR: Putative type II secretion system protein%3B~IMG reference gene:2505285211~PFAM: Bacterial type II and III secretion system protein~TIGRFAM: type IVB pilus formation outer membrane protein%2C R64 PilN family%3B pilus (MSHA type) biogenesis protein MshL gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1881 Thein_1882 Thein_1882 Thein_1882 1954661 1955092 - hypothetical protein KEGG: uue:UUR10_0551 fibronectin repeat protein~SPTR: Alpha-/beta-galactoside alpha-2%2C3-sialyltransferase%3B~IMG reference gene:2505285212 gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1882 Thein_1883 Thein_1883 Thein_1883 1955098 1955502 - hypothetical protein KEGG: pfh:PFHG_03359 conserved hypothetical protein~SPTR: Chromosome undetermined scaffold_38%2C whole genome shotgun sequence%3B~IMG reference gene:2505285213 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1883 Thein_1884 Thein_1884 Thein_1884 1955504 1956808 - Fimbrial assembly family protein InterPro IPR007813~KEGG: xfn:XfasM23_1788 fimbrial assembly family protein~PFAM: Fimbrial assembly family protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285214 gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1884 Thein_1885 Thein_1885 Thein_1885 1956805 1957722 - AAA ATPase COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase)~InterPro IPR003593~KEGG: pmx:PERMA_0968 peptidoglycan-binding domain 1 protein~SMART: AAA ATPase~SPTR: General secretion pathway protein%2C ATPase%3B~IMG reference gene:2505285215~PFAM: Archaeal ATPase gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1885 Thein_1886 Thein_1886 Thein_1886 1957722 1958933 - Type II secretion system F domain protein COGs: COG1459 Type II secretory pathway component PulF~InterPro IPR003004:IPR018076~KEGG: pmx:PERMA_0978 putative type II secretion system protein~PFAM: Type II secretion system F domain~SPTR: Putative type II secretion system protein%3B~IMG reference gene:2505285216~PFAM: Bacterial type II secretion system protein F domain gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1886 Thein_1887 Thein_1887 Thein_1887 1958933 1960564 - type II secretion system protein E COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB~InterPro IPR001482:IPR007831:IPR003593~KEGG: pmx:PERMA_0977 type IV pilus assembly protein TapB~PFAM: type II secretion system protein E%3B General secretory system II protein E domain protein~SMART: AAA ATPase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285217~PFAM: GSPII_E N-terminal domain%3B Type II/IV secretion system protein gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1887 Thein_1888 Thein_1888 Thein_1888 1960622 1961224 - putative Ig family protein InterPro IPR005829:IPR001120:IPR012902~KEGG: pmx:PERMA_0970 putative Ig family protein~SPTR: Putative Ig family protein%3B~IMG reference gene:2505285218~PFAM: Prokaryotic N-terminal methylation motif~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1888 Thein_1889 Thein_1889 Thein_1889 1961323 1961889 + methylation site InterPro IPR001120:IPR012902~KEGG: tcx:Tcr_0472 methylation site~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285219~PFAM: Prokaryotic N-terminal methylation motif~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1889 Thein_1890 Thein_1890 Thein_1890 1962059 1963750 + adenine deaminase COGs: COG1001 Adenine deaminase~InterPro IPR006679:IPR003016:IPR006680~KEGG: mfs:MFS40622_0890 adenine deaminase~PFAM: amidohydrolase~PRIAM: Adenine deaminase~SPTR: Adenine deaminase%3B~TIGRFAM: adenine deaminase~IMG reference gene:2505285220~PFAM: Amidohydrolase family~TIGRFAM: adenine deaminase gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1890 Thein_1891 Thein_1891 Thein_1891 1963773 1965074 + Xanthine/uracil/vitamin C permease COGs: COG2252 Permease~InterPro IPR006043~KEGG: mja:MJ0326 hypothetical protein~PFAM: Xanthine/uracil/vitamin C permease~SPTR: Putative permease MJ0326%3B~IMG reference gene:2505285221~PFAM: Permease family gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1891 Thein_1892 Thein_1892 Thein_1892 1965455 1966600 + protein of unknown function DUF100 COGs: COG1980 fructose 1 6-bisphosphatase~InterPro IPR002803~KEGG: aae:aq_1790 hypothetical protein~PFAM: protein of unknown function DUF100~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285223~PFAM: Fructose-1%2C6-bisphosphatase gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1892 Thein_1893 Thein_1893 Thein_1893 1966628 1967098 - CheC-like protein COGs: COG1406 inhibitor of MCP methylation homolog of CheC~KEGG: sdn:Sden_0523 CheC-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285224 gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1893 Thein_1894 Thein_1894 Thein_1894 1967183 1969456 - Glycosyltransferase 28 domain protein COGs: COG0419 ATPase involved in DNA repair~InterPro IPR007235~KEGG: mif:Metin_0813 SMC domain protein~PFAM: Glycosyltransferase 28 domain~SPTR: DNA double-strand break repair Rad50 ATPase%3B~IMG reference gene:2505285225 gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1894 Thein_1895 Thein_1895 Thein_1895 1969443 1970528 - metallophosphoesterase COGs: COG0420 DNA repair exonuclease~InterPro IPR004843~KEGG: mta:Moth_1789 metallophosphoesterase~PFAM: metallophosphoesterase~SPTR: Exonuclease SbcD%3B~IMG reference gene:2505285226~PFAM: Calcineurin-like phosphoesterase gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1895 Thein_1896 Thein_1896 Thein_1896 1970911 1972215 - cobyrinic acid a%2Cc-diamide synthase COGs: COG1797 Cobyrinic acid a c-diamide synthase~InterPro IPR004484:IPR011698:IPR017929~KEGG: gur:Gura_4184 cobyrinic acid a%2Cc-diamide synthase~PFAM: CobB/CobQ domain protein glutamine amidotransferase~SPTR: Cobyrinic Acid a%2Cc-diamide synthase%3B~TIGRFAM: cobyrinic acid a%2Cc-diamide synthase~IMG reference gene:2505285227~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain%3B CobB/CobQ-like glutamine amidotransferase domain~TIGRFAM: cobyrinic acid a%2Cc-diamide synthase gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1896 Thein_1897 Thein_1897 Thein_1897 1972215 1973930 - precorrin-3B C17-methyltransferase COGs: COG1010 Precorrin-3B methylase~InterPro IPR002750:IPR000878:IPR006363~KEGG: rrs:RoseRS_0572 precorrin-3B C17-methyltransferase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B cobalamin (vitamin B12) biosynthesis CbiG protein~SPTR: Precorrin-3 methyltransferase / precorrin-2 dehydrogenase%3B~TIGRFAM: precorrin-3B C17-methyltransferase~IMG reference gene:2505285228~PFAM: Cobalamin synthesis G C-terminus%3B Tetrapyrrole (Corrin/Porphyrin) Methylases%3B Cobalamin synthesis G N-terminal~TIGRFAM: precorrin-3B C17-methyltransferase gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1897 Thein_1898 Thein_1898 Thein_1898 1974002 1974760 - precorrin-4 C11-methyltransferase COGs: COG2875 Precorrin-4 methylase~InterPro IPR003043:IPR000878:IPR006362~KEGG: mfe:Mefer_1523 precorrin-4 C11-methyltransferase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase~PRIAM: Precorrin-4 C(11)-methyltransferase~SPTR: Precorrin-4 C11-methyltransferase%3B~TIGRFAM: precorrin-4 C11-methyltransferase~IMG reference gene:2505285229~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: precorrin-4 C11-methyltransferase gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1898 Thein_1899 Thein_1899 Thein_1899 1974750 1975994 - precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit COGs: COG2242 Precorrin-6B methylase 2~InterProIPR006365:IPR000878:IPR003358:IPR012818:IPR 014008~KEGG: dal:Dalk_0449 precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B methyltransferase~PRIAM: Precorrin-6Y C(5%2C15)-methyltransferase (decarboxylating)~SPTR: Precorrin-6y C5%2C15-methyltransferase (Decarboxylating)%2C CbiE subunit%3B~TIGRFAM: precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit%3B precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit~IMG reference gene:2505285230~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases%3B Putative methyltransferase~TIGRFAM: precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit%3B precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1899 Thein_1900 Thein_1900 Thein_1900 1976117 1977091 + transport system permease protein COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: dap:Dacet_0167 transport system permease protein~PFAM: transport system permease protein~SPTR: Transport system permease protein%3B~IMG reference gene:2505285231~PFAM: FecCD transport family gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1900 Thein_1901 Thein_1901 Thein_1901 1977078 1977845 + ABC transporter related protein COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR017871:IPR003439:IPR003593~KEGG: mac:MA3919 iron ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Iron ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2505285232~PFAM: ABC transporter gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1901 Thein_1902 Thein_1902 Thein_1902 1977827 1978627 - periplasmic binding protein COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component~InterPro IPR002491~KEGG: ddf:DEFDS_2057 iron ABC transporter substrate-binding protein~PFAM: periplasmic binding protein~SPTR: Iron ABC transporter%2C substrate-binding protein%3B~IMG reference gene:2505285233~PFAM: Periplasmic binding protein gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1902 Thein_1903 Thein_1903 Thein_1903 1979044 1979967 + anaerobic cobalt chelatase COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase~InterPro IPR010388:IPR019758~KEGG: sfu:Sfum_1101 anaerobic cobalt chelatase~PFAM: anaerobic cobalt chelatase~SPTR: Anaerobic cobaltochelatase%3B~IMG reference gene:2505285234~PFAM: Cobalt chelatase (CbiK) gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1903 Thein_1904 Thein_1904 Thein_1904 1979970 1980674 + precorrin-2 C20-methyltransferase COGs: COG2243 Precorrin-2 methylase~InterPro IPR012382:IPR003043:IPR000878:IPR006364~KEGG: dat:HRM2_02310 CbiL~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase~SPTR: CbiL%3B~TIGRFAM: precorrin-2 C20-methyltransferase~IMG reference gene:2505285235~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: precorrin-2 C20-methyltransferase gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1904 Thein_1905 Thein_1905 Thein_1905 1980738 1981838 - cobalamin biosynthesis protein CbiD COGs: COG1903 Cobalamin biosynthesis protein CbiD~InterPro IPR002748~KEGG: nmr:Nmar_0083 cobalamin biosynthesis protein CbiD~PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein~SPTR: Putative cobalt-precorrin-6A synthase [deacetylating]%3B~TIGRFAM: cobalamin biosynthesis protein CbiD~IMG reference gene:2505285236~PFAM: CbiD~TIGRFAM: cobalamin biosynthesis protein CbiD gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1905 Thein_1906 Thein_1906 Thein_1906 1981840 1982469 - Precorrin-8X methylmutase COGs: COG2082 Precorrin isomerase~InterPro IPR003722~KEGG: amt:Amet_0069 precorrin-8X methylmutase CbiC/CobH~PFAM: Precorrin-8X methylmutase CbiC/CobH~PRIAM: Precorrin-8X methylmutase~SPTR: Precorrin-8X methylmutase%3B~IMG reference gene:2505285237~PFAM: Precorrin-8X methylmutase gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1906 Thein_1907 Thein_1907 Thein_1907 1982466 1983509 - histone deacetylase superfamily COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein~InterPro IPR000286:IPR003084~KEGG: sat:SYN_00740 histone deacetylase family protein~PFAM: histone deacetylase superfamily~SPTR: Histone deacetylase family protein%3B~IMG reference gene:2505285238~PFAM: Histone deacetylase domain gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1907 Thein_1908 Thein_1908 Thein_1908 1983526 1984161 - multiple antibiotic resistance (MarC)-related protein COGs: COG2095 Multiple antibiotic transporter~InterPro IPR002771~KEGG: cti:RALTA_A2872 conserved hypothetical protein%3B putative antibiotic resistance protein MarC family~PFAM: multiple antibiotic resistance (MarC)-related protein~SPTR: Probable multiple antibiotic resistance protein MarC%3B~IMG reference gene:2505285239~PFAM: MarC family integral membrane protein~TIGRFAM: membrane protein%2C MarC family gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1908 Thein_1909 Thein_1909 Thein_1909 1984386 1985261 + biotin/acetyl-CoA-carboxylase ligase COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase~InterPro IPR004143:IPR004408~KEGG: dak:DaAHT2_0465 biotin/acetyl-CoA-carboxylase ligase~PFAM: biotin/lipoate A/B protein ligase~SPTR: Biotin/acetyl-CoA-carboxylase ligase%3B~TIGRFAM: biotin/acetyl-CoA-carboxylase ligase~IMG reference gene:2505285240~PFAM: Biotin/lipoate A/B protein ligase family~TIGRFAM: birA%2C biotin-[acetyl-CoA-carboxylase] ligase region gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1909 Thein_1910 Thein_1910 Thein_1910 1985389 1986108 + DNA repair protein RadC COGs: COG2003 DNA repair protein~InterPro IPR020891:IPR001405~KEGG: dps:DP0715 DNA repair protein RadC~PFAM: DNA repair protein RadC~SPTR: Related to DNA repair protein RadC%3B~TIGRFAM: DNA repair protein RadC~IMG reference gene:2505285241~PFAM: Protein of unknown function (DUF2466)~TIGRFAM: DNA repair protein radc gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1910 Thein_1911 Thein_1911 Thein_1911 1986105 1987832 + hydroxymethylbutenyl pyrophosphate reductase COGs: COG0761 Penicillin tolerance protein~InterPro IPR003451:IPR000537~KEGG: dat:HRM2_31890 IspH~PFAM: LytB protein%3B UbiA prenyltransferase~PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~SPTR: IspH%3B~TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase~IMG reference gene:2505285242~PFAM: LytB protein%3B UbiA prenyltransferase family~TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1911 Thein_1912 Thein_1912 Thein_1912 1987822 1988316 + CMP/dCMP deaminase zinc-binding protein COGs: COG0590 Cytosine/adenosine deaminase~InterPro IPR016192:IPR002125~KEGG: dat:HRM2_17420 putative riboflavin biosynthesis protein RibD~PFAM: CMP/dCMP deaminase zinc-binding~SPTR: Putative riboflavin biosynthesis protein ribD%3B~IMG reference gene:2505285243~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1912 Thein_1913 Thein_1913 Thein_1913 1989115 1990131 + Radical SAM domain protein COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR016431:IPR007197~KEGG: dak:DaAHT2_1232 radical SAM domain protein~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505285248~PFAM: Radical SAM superfamily gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1913 Thein_1914 Thein_1914 Thein_1914 1990122 1991123 + hydrogenase expression/formation protein HypE COGs: COG0309 Hydrogenase maturation factor~InterPro IPR011854:IPR000728:IPR010918~KEGG: ana:alr0698 hydrogenase expression/formation protein~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein~SPTR: Hydrogenase expression/formation protein%3B~TIGRFAM: hydrogenase expression/formation protein HypE~IMG reference gene:2505285249~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: hydrogenase expression/formation protein HypE gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1914 Thein_1915 Thein_1915 Thein_1915 1991189 1992406 + tyrosyl-tRNA synthetase COGs: COG0162 Tyrosyl-tRNA synthetase~InterPro IPR002307:IPR001412:IPR002305:IPR002942~KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: Tyrosyl-tRNA synthetase%3B~TIGRFAM: tyrosyl-tRNA synthetase~IMG reference gene:2505285250~PFAM: S4 domain%3B tRNA synthetases class I (W and Y)~TIGRFAM: tyrosyl-tRNA synthetase gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1915 Thein_1916 Thein_1916 Thein_1916 1992447 1993556 - protein of unknown function DUF195 COGs: COG1322 conserved hypothetical protein~InterPro IPR003798~KEGG: hna:Hneap_0053 protein of unknown function DUF195~PFAM: protein of unknown function DUF195~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285251~PFAM: RmuC family gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1916 Thein_1917 Thein_1917 Thein_1917 1993903 1994136 + hypothetical protein KEGG: tye:THEYE_A0863 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285252 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1917 Thein_1918 Thein_1918 Thein_1918 1994136 1995839 + acetolactate synthase%2C large subunit%2C biosynthetic type COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterProIPR000399:IPR012001:IPR012000:IPR011766:IPR 012846~KEGG: tye:THEYE_A1275 acetolactate synthase%2C large subunit%2C biosynthetic type~PFAM: thiamine pyrophosphate TPP-binding domain-containing protein%3B thiamine pyrophosphate central domain-containing protein~SPTR: Acetolactate synthase%3B~TIGRFAM: acetolactate synthase%2C large subunit%2C biosynthetic type~IMG reference gene:2505285253~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: acetolactate synthase%2C large subunit%2C biosynthetic type gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1918 Thein_1919 Thein_1919 Thein_1919 1995850 1996344 + acetolactate synthase%2C small subunit COGs: COG0440 Acetolactate synthase small (regulatory) subunit~InterPro IPR002912:IPR019455:IPR004789~KEGG: dak:DaAHT2_0726 acetolactate synthase%2C small subunit~PFAM: Acetolactate synthase%2C small subunit-like%3B amino acid-binding ACT domain protein~SPTR: Acetolactate synthase%2C small subunit%3B~TIGRFAM: acetolactate synthase%2C small subunit~IMG reference gene:2505285254~PFAM: ACT domain%3B Small subunit of acetolactate synthase~TIGRFAM: acetolactate synthase%2C small subunit gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1919 Thein_1920 Thein_1920 Thein_1920 1996421 1999093 + ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC COGs: COG0474 Cation transport ATPase~InterProIPR001757:IPR000695:IPR018303:IPR022272:IPR 004014:IPR008250:IPR005834:IPR006068~KEGG: tpe:Tpen_0197 ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B cation transporting ATPase domain protein%3B Haloacid dehalogenase domain protein hydrolase~SPTR: ATPase%2C P-type (Transporting)%2C HAD superfamily%2C subfamily IC%3B~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~IMG reference gene:2505285255~PFAM: E1-E2 ATPase%3B Cation transporting ATPase%2C C-terminus%3B Cation transporter/ATPase%2C N-terminus%3B haloacid dehalogenase-like hydrolase~TIGRFAM: plasma-membrane calcium-translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1920 Thein_1921 Thein_1921 Thein_1921 1999247 2000068 + shikimate 5-dehydrogenase COGs: COG0169 Shikimate 5-dehydrogenase~InterPro IPR013708:IPR006151:IPR011342~KEGG: tko:TK0265 shikimate 5-dehydrogenase~PFAM: Shikimate dehydrogenase substrate binding domain protein%3B Shikimate/quinate 5-dehydrogenase~SPTR: Probable shikimate 5-dehydrogenase%3B~TIGRFAM: shikimate 5-dehydrogenase~IMG reference gene:2505285256~PFAM: Shikimate dehydrogenase substrate binding domain%3B Shikimate / quinate 5-dehydrogenase~TIGRFAM: shikimate 5-dehydrogenase gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1921 Thein_1922 Thein_1922 Thein_1922 2000049 2001323 + 3-phosphoshikimate 1-carboxyvinyltransferase COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase~InterPro IPR016228:IPR006264:IPR001986~KEGG: dak:DaAHT2_0008 3-phosphoshikimate 1-carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase%3B~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase~IMG reference gene:2505285257~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1922 Thein_1923 Thein_1923 Thein_1923 2001320 2001847 + Shikimate kinase COGs: COG0703 Shikimate kinase~InterPro IPR000623~KEGG: dal:Dalk_1763 shikimate kinase~PFAM: shikimate kinase~PRIAM: Shikimate kinase~SPTR: Shikimate kinase%3B~IMG reference gene:2505285258~PFAM: Shikimate kinase gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1923 Thein_1924 Thein_1924 Thein_1924 2002940 2003788 + hypothetical protein InterPro IPR005829~KEGG: ccs:CCNA_01817 nitrogen assimilation regulatory protein NtrX~SPTR: AmphC%3B~IMG reference gene:2505285260 gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1924 Thein_1925 Thein_1925 Thein_1925 2003798 2004733 + hypothetical protein KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285261 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1925 Thein_1926 Thein_1926 Thein_1926 2004720 2005070 + hypothetical protein KEGG: dvi:Dvir_GJ22244 GJ22244 gene product from transcript GJ22244-RA~SPTR: GA18591%3B~IMG reference gene:2505285262 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1926 Thein_1927 Thein_1927 Thein_1927 2005074 2005499 + hypothetical protein KEGG: hth:HTH_0126 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285263 gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1927 Thein_1928 Thein_1928 Thein_1928 2005496 2006278 + protein-disulfide isomerase KEGG: ppd:Ppro_0260 protein-disulfide isomerase~SPTR: Protein-disulfide isomerase%3B~IMG reference gene:2505285264 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1928 Thein_1929 Thein_1929 Thein_1929 2006291 2006695 + hypothetical protein KEGG: sat:SYN_01859 hypothetical protein~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2505285265 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1929 Thein_1930 Thein_1930 Thein_1930 2006708 2006989 + type IV conjugative transfer system protein TraL InterPro IPR009838~KEGG: ppd:Ppro_3782 hypothetical protein~SPTR: Conserved hypothetical membrane protein%3B~TIGRFAM: type IV conjugative transfer system protein TraL~IMG reference gene:2505285266~PFAM: TraL protein~TIGRFAM: type IV conjugative transfer system protein TraL gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1930 Thein_1931 Thein_1931 Thein_1931 2006994 2007593 + sex pilus assembly/synthesis protein KEGG: sat:SYN_01861 sex pilus assembly/synthesis protein~SPTR: Hypothetical sex pilus assembly and synthesis protein%3B~IMG reference gene:2505285267~PFAM: TraE protein~TIGRFAM: type IV conjugative transfer system protein TraE gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1931 Thein_1932 Thein_1932 Thein_1932 2007590 2008492 + hypothetical protein KEGG: sat:SYN_01862 hypothetical protein~SPTR: Hypothetical exported protein%3B~IMG reference gene:2505285268~PFAM: TraK protein gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1932 Thein_1933 Thein_1933 Thein_1933 2008489 2009727 + pilus assembly protein KEGG: sat:SYN_01863 pilus assembly protein~SPTR: Pilus assembly protein%3B~IMG reference gene:2505285269~PFAM: Bacterial conjugation TrbI-like protein gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1933 Thein_1934 Thein_1934 Thein_1934 2009678 2010265 + hypothetical protein KEGG: sat:SYN_01864 hypothetical protein~SPTR: Hypothetical exported protein%3B~IMG reference gene:2505285270~PFAM: Type IV conjugative transfer system lipoprotein (TraV) gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1934 Thein_1935 Thein_1935 Thein_1935 2010255 2010641 + hypothetical protein KEGG: brm:Bmur_2211 peptidoglycan-binding lysin domain protein~SPTR: Peptidoglycan-binding lysin domain protein%3B~IMG reference gene:2505285271 gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1935 Thein_1936 Thein_1936 Thein_1936 2010625 2011128 + Peptidase S26%2C conserved region COGs: COG4959 Type IV secretory pathway protease TraF~InterPro IPR000223:IPR019533~KEGG: gdj:Gdia_2802 conjugal transfer protein precursor~PFAM: Peptidase S26%2C conserved region~SPTR: Conjugal transfer protein%3B~IMG reference gene:2505285272~PFAM: Peptidase S26 gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1936 Thein_1937 Thein_1937 Thein_1937 2011107 2011937 + hypothetical protein KEGG: sat:SYN_01873 hypothetical protein~SPTR: Hypothetical exported protein%3B~IMG reference gene:2505285273 gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1937 Thein_1938 Thein_1938 Thein_1938 2011934 2012335 - PilT protein domain protein COGs: COG1569 nucleic acid-binding protein contains PIN domain~InterPro IPR002716:IPR006596:IPR002850~KEGG: tye:THEYE_A1622 hypothetical protein~PFAM: PilT protein domain protein~SMART: Nucleotide binding protein PINc~SPTR: Nucleotide binding protein PINc%3B~IMG reference gene:2505285274~PFAM: PIN domain~TIGRFAM: putative toxin-antitoxin system toxin component%2C PIN family gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1938 Thein_1939 Thein_1939 Thein_1939 2012332 2012550 - ribbon-helix-helix protein KEGG: lbl:LBL_0974 ribbon-helix-helix protein~SPTR: Ribbon-helix-helix protein%3B~IMG reference gene:2505285275~PFAM: Ribbon-helix-helix protein%2C copG family gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1939 Thein_1940 Thein_1940 Thein_1940 2012689 2013579 - hypothetical protein KEGG: tmz:Tmz1t_0115 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285276 gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1940 Thein_1941 Thein_1941 Thein_1941 2013759 2015255 + TraH family protein InterPro IPR010927~KEGG: enc:ECL_B077 putative pilus assembly protein~PFAM: TraH family protein~SPTR: Putative pilus assembly protein (Hypothetical protein)%3B~IMG reference gene:2505285277~PFAM: Conjugative relaxosome accessory transposon protein gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1941 Thein_1942 Thein_1942 Thein_1942 2015255 2018827 + hypothetical protein KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein~SPTR: DNA transfer and F pilus assembly protein%3B~IMG reference gene:2505285278~PFAM: TraG-like protein%2C N-terminal region gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1942 Thein_1943 Thein_1943 Thein_1943 2018824 2019060 - hypothetical protein KEGG: gga:771369 family with sequence similarity 8%2C member A1~IMG reference gene:2505285279 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1943 Thein_1944 Thein_1944 Thein_1944 2019208 2020083 - hypothetical protein KEGG: sas:SAS0044 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285280 gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1944 Thein_1945 Thein_1945 Thein_1945 2020097 2021410 - Exonuclease VII%2C large subunit InterPro IPR020579~KEGG: tva:TVAG_210560 trichohyalin~PFAM: Exonuclease VII%2C large subunit-like~SPTR: Trichohyalin%2C putative%3B~IMG reference gene:2505285281~PFAM: Exonuclease VII%2C large subunit gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1945 Thein_1946 Thein_1946 Thein_1946 2021719 2021973 + hypothetical protein IMG reference gene:2505285282 gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1946 Thein_1947 Thein_1947 Thein_1947 2022076 2022918 + hypothetical protein KEGG: dak:DaAHT2_2027 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285283 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1947 Thein_1948 Thein_1948 Thein_1948 2023024 2023392 + malate permease KEGG: sgo:SGO_0373 malate permease~SPTR: Similar to precorrin-6 methyltransferase CbiE%3B~IMG reference gene:2505285284 gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1948 Thein_1949 Thein_1949 Thein_1949 2023416 2023604 + hypothetical protein KEGG: bth:BT_1254 hypothetical protein~IMG reference gene:2505285285 gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1949 Thein_1950 Thein_1950 Thein_1950 2023640 2024047 - single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR000424:IPR011344~KEGG: pca:Pcar_0643 ssDNA-binding protein~PFAM: single-strand binding protein/Primosomal replication protein n~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: single-strand binding protein~IMG reference gene:2505285286~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1950 Thein_1951 Thein_1951 Thein_1951 2024075 2024755 - hypothetical protein KEGG: sat:SYN_01891 hypothetical protein~SPTR: Na(+)/H(+) antiporter nhaA 1%3B~IMG reference gene:2505285287 gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1951 Thein_1952 Thein_1952 Thein_1952 2024757 2025017 - hypothetical protein KEGG: tma:TM1134 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285288 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1952 Thein_1953 Thein_1953 Thein_1953 2025014 2025196 - potential G-patch domain protein KEGG: cal:CaO19.1877 potential G-patch domain protein%2C similar to S. cerevisiae YLR271W~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285289 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1953 Thein_1954 Thein_1954 Thein_1954 2025207 2026199 - TraU family protein InterPro IPR009649~KEGG: glo:Glov_0311 TraU family protein~PFAM: TraU family protein~SPTR: TraU family protein%3B~IMG reference gene:2505285290~PFAM: TraU protein gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1954 Thein_1955 Thein_1955 Thein_1955 2026192 2026827 - pseudogene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1955 Thein_1956 Thein_1956 Thein_1956 2026802 2028022 - Type-F conjugative transfer system pilin assembly protein TrbC InterPro IPR019106~KEGG: ppd:Ppro_0250 hypothetical protein~PFAM: Type-F conjugative transfer system pilin assembly protein TrbC~SPTR: Conserved hypothetical cytosolic protein%3B~IMG reference gene:2505285292~PFAM: Type-F conjugative transfer system pilin assembly protein gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1956 Thein_1957 Thein_1957 Thein_1957 2028003 2029067 - hypothetical protein KEGG: mmu:216197 cytoskeleton-associated protein 4~SPTR: Cytoskeleton-associated protein 4%3B~IMG reference gene:2505285293 gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1957 Thein_1958 Thein_1958 Thein_1958 2029081 2030580 - hypothetical protein KEGG: glo:Glov_0314 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285294 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1958 Thein_1959 Thein_1959 Thein_1959 2030556 2032502 - hypothetical protein KEGG: glo:Glov_0315 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285295 gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1959 Thein_1960 Thein_1960 Thein_1960 2032474 2035038 - sex pilus assembly protein COGs: COG3451 Type IV secretory pathway VirB4 protein~KEGG: sat:SYN_01865 sex pilus assembly protein~SPTR: Sex pilus assembly protein%3B~IMG reference gene:2505285296~PFAM: F pilus assembly Type-IV secretion system for plasmid transfer~TIGRFAM: type-IV secretion system protein TraC gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1960 Thein_1961 Thein_1961 Thein_1961 2035240 2035479 - hypothetical protein KEGG: dau:Daud_0511 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285297~TIGRFAM: YgiT-type zinc finger domain gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1961 Thein_1962 Thein_1962 Thein_1962 2035476 2035751 - hypothetical protein KEGG: mta:Moth_1799 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285298 gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1962 Thein_1963 Thein_1963 Thein_1963 2035768 2036664 - domain of unknown function DUF1738 COGs: COG4227 Antirestriction protein~InterPro IPR017113:IPR013610~KEGG: ecq:ECED1_3533 hypothetical protein~PFAM: domain of unknown function DUF1738~SPTR: Probable DNA primase%3B~IMG reference gene:2505285299~PFAM: Domain of unknown function (DUF1738) gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1963 Thein_1964 Thein_1964 Thein_1964 2036785 2037432 - hypothetical protein KEGG: saf:SULAZ_0343 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285300 gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1964 Thein_1965 Thein_1965 Thein_1965 2037564 2037977 - hypothetical protein KEGG: fpl:Ferp_2046 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285301~PFAM: Protein of unknown function (DUF736) gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1965 Thein_1966 Thein_1966 Thein_1966 2038446 2040455 - metal-dependent phosphohydrolase HD sub domain protein InterPro IPR007404:IPR006674~KEGG: sat:SYN_01887 metal dependent phosphohydrolases~PFAM: metal-dependent phosphohydrolase HD sub domain%3B membrane-bound metal-dependent hydrolase~SPTR: Metal dependent phosphohydrolases%3B~IMG reference gene:2505285302~PFAM: HD domain%3B Predicted membrane-bound metal-dependent hydrolase (DUF457) gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1966 Thein_1967 Thein_1967 Thein_1967 2040583 2042010 + hypothetical protein KEGG: gsu:GSU2122 TraG family protein~SPTR: TraG family protein%3B~IMG reference gene:2505285303~PFAM: TraG/TraD family gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1967 Thein_1968 Thein_1968 Thein_1968 2042037 2042537 - PilT protein domain protein InterPro IPR002716:IPR006596~KEGG: saf:SULAZ_0262 putative PIN domain protein~PFAM: PilT protein domain protein~SMART: Nucleotide binding protein PINc~SPTR: Putative PIN domain protein%3B~IMG reference gene:2505285304~PFAM: PIN domain gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1968 Thein_1969 Thein_1969 Thein_1969 2042541 2042900 - hypothetical protein KEGG: mdo:100026581 similar to ATP-binding cassette transporter sub-family A member 14~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285305 gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1969 Thein_1970 Thein_1970 Thein_1970 2043055 2043597 - hypothetical protein KEGG: tps:THAPSDRAFT_36310 hypothetical protein~SPTR: Predicted protein%3B~IMG reference gene:2505285306 gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1970 Thein_1971 Thein_1971 Thein_1971 2043615 2044385 - hypothetical protein KEGG: hps:HPSH_02420 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285307~PFAM: Protein of unknown function DUF88 gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1971 Thein_1972 Thein_1972 Thein_1972 2044387 2044920 - helix-turn-helix domain protein InterPro IPR001387~KEGG: rha:RHA1_ro11274 repressor protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: Putative transcription regulator%3B~IMG reference gene:2505285308~PFAM: Helix-turn-helix gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1972 Thein_1973 Thein_1973 Thein_1973 2045024 2045356 + protein kinase KEGG: tcr:508987.30 protein kinase~SPTR: Protein kinase%2C putative%3B~IMG reference gene:2505285309 gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1973 Thein_1974 Thein_1974 Thein_1974 2045356 2045802 + hypothetical protein KEGG: pgu:PGUG_04933 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285310~PFAM: ParB-like nuclease domain gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1974 Thein_1975 Thein_1975 Thein_1975 2045799 2046245 + hypothetical protein KEGG: vei:Veis_1966 putative indolepyruvate oxidoreductase subunit B~SPTR: Indolepyruvate ferredoxin oxidoreductase beta subunit%3B~IMG reference gene:2505285311 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1975 Thein_1976 Thein_1976 Thein_1976 2046242 2046574 + hypothetical protein KEGG: tcr:506905.10 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285312 gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1976 Thein_1977 Thein_1977 Thein_1977 2046577 2046927 + hypothetical protein KEGG: tbr:Tb927.1.620 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285313 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1977 Thein_1978 Thein_1978 Thein_1978 2046917 2047867 + hypothetical protein KEGG: dre:567594 similar to CG15877 CG15877-PA~SPTR: Normocyte binding protein 2a%3B~IMG reference gene:2505285314 gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1978 Thein_1979 Thein_1979 Thein_1979 2047901 2048182 + hypothetical protein KEGG: dap:Dacet_0701 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285315~TIGRFAM: DNA binding domain%2C excisionase family gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1979 Thein_1980 Thein_1980 Thein_1980 2048176 2049219 + integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR002104~KEGG: dap:Dacet_0700 integrase family protein~PFAM: integrase family protein~SPTR: Phage integrase family protein%3B~IMG reference gene:2505285316~PFAM: Phage integrase family gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1980 Thein_1981 Thein_1981 Thein_1981 2049293 2050756 - cation transporter COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: sat:SYN_02617 trk system potassium uptake protein~PFAM: cation transporter~SPTR: Trk system potassium uptake protein%3B~IMG reference gene:2505285317~PFAM: Cation transport protein~TIGRFAM: potassium uptake protein%2C TrkH family gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1981 Thein_1982 Thein_1982 Thein_1982 2050753 2052108 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR006036:IPR003148:IPR006037~KEGG: sat:SYN_02618 potassium transporter peripheral membrane component~PFAM: TrkA-N domain protein%3B TrkA-C domain protein~SPTR: Trk system potassium uptake protein%3B~IMG reference gene:2505285318~PFAM: TrkA-N domain%3B TrkA-C domain gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1982 Thein_1983 Thein_1983 Thein_1983 2052151 2053452 - histidinol dehydrogenase COGs: COG0141 Histidinol dehydrogenase~InterPro IPR012131:IPR001692~KEGG: sfu:Sfum_3299 histidinol dehydrogenase~PFAM: Histidinol dehydrogenase~PRIAM: Histidinol dehydrogenase~SPTR: Histidinol dehydrogenase%3B~TIGRFAM: histidinol dehydrogenase~IMG reference gene:2505285319~PFAM: Histidinol dehydrogenase~TIGRFAM: histidinol dehydrogenase gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1983 Thein_1984 Thein_1984 Thein_1984 2053454 2053873 - protein of unknown function UPF0047 COGs: COG0432 conserved hypothetical protein~InterPro IPR001602~KEGG: mpd:MCP_0732 hypothetical protein~PFAM: protein of unknown function UPF0047~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285320~PFAM: Uncharacterised protein family UPF0047~TIGRFAM: secondary thiamine-phosphate synthase enzyme gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1984 Thein_1985 Thein_1985 Thein_1985 2053870 2054451 - hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit COGs: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain~InterPro IPR004647~KEGG: dak:DaAHT2_1200 hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit~PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region~SPTR: Fe-S type hydro-lyases tartrate/fumarate beta region%3B~TIGRFAM: hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit~IMG reference gene:2505285321~PFAM: Fumarase C-terminus~TIGRFAM: hydro-lyases%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta region gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1985 Thein_1986 Thein_1986 Thein_1986 2054495 2055820 + ribosome-associated GTPase EngA COGs: COG1160 GTPase~InterPro IPR006073:IPR016484:IPR002917:IPR005225~KEGG: dal:Dalk_4099 GTP-binding protein EngA~PFAM: GTP-binding protein HSR1-related~SPTR: GTP-binding protein engA%3B~TIGRFAM: ribosome-associated GTPase EngA%3B small GTP-binding protein~IMG reference gene:2505285322~PFAM: GTPase of unknown function~TIGRFAM: ribosome-associated GTPase EngA%3B GTP-binding protein Era%3B small GTP-binding protein domain gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1986 Thein_1987 Thein_1987 Thein_1987 2056141 2057436 + adenylosuccinate synthetase COGs: COG0104 Adenylosuccinate synthase~InterPro IPR001114:IPR018220:IPR000408~KEGG: dps:DP1480 adenylosuccinate synthetase~PFAM: adenylosuccinate synthetase~PRIAM: Adenylosuccinate synthase~SMART: adenylosuccinate synthetase~SPTR: Adenylosuccinate synthetase%3B~TIGRFAM: adenylosuccinate synthetase~IMG reference gene:2505285323~PFAM: Adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthase gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1987 Thein_1988 Thein_1988 Thein_1988 2057439 2058833 + Pyruvate carboxylase COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit~InterProIPR005479:IPR005481:IPR005482:IPR011761:IPR 011764~KEGG: dak:DaAHT2_0460 pyruvate carboxylase~PFAM: Carbamoyl-phosphate synthase L chain ATP-binding%3B Carbamoyl-phosphate synthetase large chain domain protein%3B biotin carboxylase domain protein~PRIAM: Pyruvate carboxylase~SPTR: Pyruvate carboxylase%3B~IMG reference gene:2505285324~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain%3B Biotin carboxylase C-terminal domain%3B Carbamoyl-phosphate synthase L chain%2C N-terminal domain gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1988 Thein_1989 Thein_1989 Thein_1989 2058830 2061070 + Acetyl-CoA carboxylase COGs: COG0825 Acetyl-CoA carboxylase alpha subunit~InterPro IPR000438:IPR013838:IPR020582~KEGG: dak:DaAHT2_0461 acetyl-CoA carboxylase~PFAM: Acetyl-CoA carboxylase%2C alpha subunit%2C conserved region~PRIAM: Acetyl-CoA carboxylase~SPTR: Acetyl-CoA carboxylase%3B~IMG reference gene:2505285325~PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1989 Thein_1990 Thein_1990 Thein_1990 2061076 2061732 + hypothetical protein KEGG: dps:DP3087 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285326 gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1990 Thein_1991 Thein_1991 Thein_1991 2061740 2062612 - hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285327~PFAM: Transposase IS200 like gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1991 Thein_1992 Thein_1992 Thein_1992 2062735 2062843 + pseudogene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1992 Thein_1993 Thein_1993 Thein_1993 2062912 2063355 + hypothetical protein KEGG: cts:Ctha_2501 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285329 gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1993 Thein_1994 Thein_1994 Thein_1994 2063364 2064047 - TonB family protein COGs: COG0810 Periplasmic protein TonB links inner and outer membranes~InterPro IPR006260~KEGG: hth:HTH_1676 TonB family protein~PFAM: TonB domain~SPTR: TonB family protein%3B~TIGRFAM: TonB family protein~IMG reference gene:2505285330~PFAM: Gram-negative bacterial tonB protein~TIGRFAM: TonB family C-terminal domain gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1994 Thein_1995 Thein_1995 Thein_1995 2064049 2064453 - Biopolymer transport protein ExbD/TolR COGs: COG0848 Biopolymer transport protein~InterPro IPR003400~KEGG: brm:Bmur_0273 biopolymer transport protein ExbD/TolR~PFAM: Biopolymer transport protein ExbD/TolR~SPTR: Biopolymer transport exbD protein%3B~IMG reference gene:2505285331~PFAM: Biopolymer transport protein ExbD/TolR gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1995 Thein_1996 Thein_1996 Thein_1996 2064446 2065042 - MotA/TolQ/ExbB proton channel COGs: COG0811 Biopolymer transport protein~InterPro IPR002898~KEGG: min:Minf_0249 MotA/TolQ/ExbB proton channel family protein~PFAM: MotA/TolQ/ExbB proton channel~SPTR: MotA/TolQ/ExbB proton channel family protein%3B~IMG reference gene:2505285332~PFAM: MotA/TolQ/ExbB proton channel family gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1996 Thein_1997 Thein_1997 Thein_1997 2065070 2066053 - Magnesium chelatase COGs: COG1239 Mg-chelatase subunit ChlI~InterPro IPR000523:IPR003593~KEGG: adg:Adeg_0556 magnesium chelatase~PFAM: magnesium chelatase ChlI subunit~PRIAM: Magnesium chelatase~SMART: AAA ATPase~SPTR: Magnesium chelatase%3B~IMG reference gene:2505285333~PFAM: Magnesium chelatase%2C subunit ChlI~TIGRFAM: magnesium chelatase ATPase subunit I gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1997 Thein_1998 Thein_1998 Thein_1998 2066050 2067993 - Magnesium chelatase COGs: COG1239 Mg-chelatase subunit ChlI~InterPro IPR011704:IPR002035:IPR003593~KEGG: cts:Ctha_2443 magnesium chelatase~PFAM: ATPase associated with various cellular activities AAA_5%3B von Willebrand factor type A~PRIAM: Magnesium chelatase~SMART: von Willebrand factor type A%3B AAA ATPase~SPTR: Magnesium chelatase%3B~IMG reference gene:2505285334~PFAM: von Willebrand factor type A domain%3B AAA domain (dynein-related subfamily)~TIGRFAM: magnesium chelatase ATPase subunit D gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1998 Thein_1999 Thein_1999 Thein_1999 2067983 2068816 - hypothetical protein KEGG: scl:sce3839 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285335 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_1999 Thein_2000 Thein_2000 Thein_2000 2068813 2070342 - hypothetical protein InterPro IPR018391~KEGG: dal:Dalk_4066 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285336 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2000 Thein_2001 Thein_2001 Thein_2001 2070293 2071123 - cobalt transport protein COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter~InterPro IPR003339~KEGG: dal:Dalk_4068 cobalt transport protein~PFAM: cobalt transport protein~SPTR: Cobalt transport protein%3B~IMG reference gene:2505285337~PFAM: Cobalt transport protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2001 Thein_2002 Thein_2002 Thein_2002 2071120 2072481 - Sigma 54 interacting domain protein COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterPro IPR017871:IPR002078:IPR003439:IPR003593~KEGG: tpe:Tpen_1541 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505285338~PFAM: ABC transporter gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2002 Thein_2003 Thein_2003 Thein_2003 2072684 2072884 + hypothetical protein KEGG: nhl:Nhal_1747 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285339 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2003 Thein_2004 Thein_2004 Thein_2004 2072884 2073138 + pseudogene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2004 Thein_2005 Thein_2005 Thein_2005 2073181 2074908 - hypothetical protein KEGG: dal:Dalk_4067 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285341 gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2005 Thein_2006 Thein_2006 Thein_2006 2074963 2075142 + NurA domain protein KEGG: fpl:Ferp_1591 NurA domain protein~SPTR: NurA domain protein%3B~IMG reference gene:2505285342 gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2006 Thein_2007 Thein_2007 Thein_2007 2075139 2075402 + pseudogene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2007 Thein_2008 Thein_2008 Thein_2008 2075413 2076597 - protein of unknown function DUF105 COGs: COG1865 conserved hypothetical protein~InterPro IPR002808~KEGG: dal:Dalk_4062 protein of unknown function DUF105~PFAM: protein of unknown function DUF105~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285344~PFAM: Adenosylcobinamide amidohydrolase gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2008 Thein_2009 Thein_2009 Thein_2009 2076804 2078636 - TonB-dependent receptor COGs: COG4206 Outer membrane cobalamin receptor protein~InterPro IPR012910:IPR000531~KEGG: glo:Glov_3556 TonB-dependent receptor plug~PFAM: TonB-dependent receptor%3B TonB-dependent receptor plug~SPTR: TonB-dependent receptor plug%3B~IMG reference gene:2505285345~PFAM: TonB-dependent Receptor Plug Domain%3B TonB dependent receptor~TIGRFAM: TonB-dependent vitamin B12 receptor gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2009 Thein_2010 Thein_2010 Thein_2010 2079197 2080252 - hydrogenase expression/formation protein HypD COGs: COG0409 Hydrogenase maturation factor~InterPro IPR002780~KEGG: gsu:GSU0308 hydrogenase expression/formation protein HypD~PFAM: hydrogenase formation HypD protein~SPTR: Hydrogenase expression/formation protein HypD%3B~TIGRFAM: hydrogenase expression/formation protein HypD~IMG reference gene:2505285346~PFAM: Hydrogenase formation hypA family~TIGRFAM: hydrogenase expression/formation protein HypD gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2010 Thein_2011 Thein_2011 Thein_2011 2080262 2081056 - protein of unknown function DUF72 COGs: COG1801 conserved hypothetical protein~InterPro IPR002763~KEGG: sat:SYN_01732 putative cytoplasmic protein~PFAM: protein of unknown function DUF72~SPTR: Hypothetical cytosolic protein%3B~IMG reference gene:2505285347~PFAM: Protein of unknown function DUF72 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2011 Thein_2012 Thein_2012 Thein_2012 2081205 2081747 + hypothetical protein KEGG: ara:Arad_12492 prenyltransferase%2C beta subunit~SPTR: Prenyltransferase%2C beta subunit%3B~IMG reference gene:2505285348 gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2012 Thein_2013 Thein_2013 Thein_2013 2081805 2082089 + ribosomal protein S20 InterPro IPR002583~KEGG: ddf:DEFDS_1532 30S ribosomal protein S20~PFAM: ribosomal protein S20~SPTR: 30S ribosomal protein S20%3B~TIGRFAM: ribosomal protein S20~IMG reference gene:2505285349~PFAM: Ribosomal protein S20~TIGRFAM: ribosomal protein S20 gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2013 Thein_2014 Thein_2014 Thein_2014 2082342 2083637 + phosphonopyruvate decarboxylase-related protein COGs: COG3635 phosphoglycerate mutase AP superfamily~InterPro IPR004456:IPR019304:IPR006124~KEGG: dak:DaAHT2_2657 phosphonopyruvate decarboxylase-related protein~PFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%3B metalloenzyme domain protein~PRIAM: Phosphoglycerate mutase~SPTR: Cofactor-independent phosphoglycerate mutase%2C archaeal%3B~TIGRFAM: phosphonopyruvate decarboxylase-related protein~IMG reference gene:2505285351~PFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%3B Metalloenzyme superfamily~TIGRFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%2C archaeal form gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2014 Thein_2015 Thein_2015 Thein_2015 2083640 2084200 + cytidyltransferase-related domain protein COGs: COG1056 Nicotinamide mononucleotide adenylyltransferase~InterPro IPR004820:IPR004821~KEGG: sfu:Sfum_3306 nicotinamide mononucleotide adenylyltransferase~PFAM: cytidylyltransferase~SPTR: Nicotinamide mononucleotide adenylyltransferase%3B~TIGRFAM: cytidyltransferase-related domain protein~IMG reference gene:2505285352~PFAM: Cytidylyltransferase~TIGRFAM: cytidyltransferase-related domain gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2015 Thein_2016 Thein_2016 Thein_2016 2084194 2084997 + Hydroxyethylthiazole kinase COGs: COG2145 Hydroxyethylthiazole kinase sugar kinase family~InterPro IPR000417:IPR011144~KEGG: tsi:TSIB_0465 hydroxyethylthiazole kinase~PFAM: hydroxyethylthiazole kinase~PRIAM: Hydroxyethylthiazole kinase~SPTR: Hydroxyethylthiazole kinase%3B~IMG reference gene:2505285353~PFAM: Hydroxyethylthiazole kinase family~TIGRFAM: hydroxyethylthiazole kinase gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2016 Thein_2017 Thein_2017 Thein_2017 2084987 2085610 + thiamine-phosphate pyrophosphorylase COGs: COG0352 Thiamine monophosphate synthase~InterPro IPR003733~KEGG: pfu:PF1334 thiamine-phosphate pyrophosphorylase~PFAM: thiamine monophosphate synthase~SPTR: Thiamine-phosphate pyrophosphorylase%3B~TIGRFAM: thiamine-phosphate pyrophosphorylase~IMG reference gene:2505285354~PFAM: Thiamine monophosphate synthase/TENI~TIGRFAM: thiamine-phosphate pyrophosphorylase gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2017 Thein_2018 Thein_2018 Thein_2018 2085603 2085962 - putative transcriptional regulator%2C ModE family COGs: COG2005 N-terminal domain of molybdenum-binding protein~InterPro IPR000847~KEGG: tye:THEYE_A0050 molybdenum transport regulatory protein ModE~PFAM: regulatory protein LysR~SPTR: Molybdenum transport regulatory protein ModE%3B~IMG reference gene:2505285355~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family~TIGRFAM: ModE molybdate transport repressor domain gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2018 Thein_2019 Thein_2019 Thein_2019 2086150 2088615 + GCN5-related N-acetyltransferase COGs: COG1042 Acyl-CoA synthetase (NDP forming)~InterPro IPR013548:IPR000182~KEGG: tye:THEYE_A0040 acetyl-CoA synthetase~PFAM: GCN5-related N-acetyltransferase%3B Plexin%2C cytoplasmic RasGAP domain~SPTR: Acetyl-CoA synthetase%3B~IMG reference gene:2505285356~PFAM: Acetyltransferase (GNAT) family gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2019 Thein_2020 Thein_2020 Thein_2020 2088608 2089576 + histone deacetylase superfamily COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein~InterPro IPR000286~KEGG: dps:DP2831 hypothetical protein~PFAM: histone deacetylase superfamily~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285357~PFAM: Histone deacetylase domain gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2020 Thein_2021 Thein_2021 Thein_2021 2089573 2090121 - PEBP family protein COGs: COG1881 Phospholipid-binding protein~InterPro IPR008914:IPR005247~KEGG: drt:Dret_1202 PEBP family protein~PFAM: PEBP family protein~SPTR: PEBP family protein%3B~IMG reference gene:2505285358~PFAM: Phosphatidylethanolamine-binding protein~TIGRFAM: Raf kinase inhibitor-like protein%2C YbhB/YbcL family gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2021 Thein_2022 Thein_2022 Thein_2022 2090299 2091657 - TRAP dicarboxylate transporter%2C DctM subunit COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component~InterPro IPR010656:IPR004681~KEGG: rmr:Rmar_2648 TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: TRAP dicarboxylate transporter%2C DctM subunit%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~IMG reference gene:2505285359~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C DctM subunit gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2022 Thein_2023 Thein_2023 Thein_2023 2091647 2092165 - Tripartite ATP-independent periplasmic transporter DctQ component COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component~InterPro IPR007387~KEGG: ava:Ava_0885 tripartite ATP-independent periplasmic transporter DctQ~PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~SPTR: Tripartite ATP-independent periplasmic transporter%2C DctQ component%3B~IMG reference gene:2505285360~PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2023 Thein_2024 Thein_2024 Thein_2024 2092175 2093404 - CoB--CoM heterodisulfide reductase COGs: COG0247 Fe-S oxidoreductase~InterPro IPR012257:IPR017900:IPR004017:IPR017896~KEGG: tye:THEYE_A0667 iron-sulfur cluster-binding protein~PFAM: protein of unknown function DUF224 cysteine-rich region domain protein~PRIAM: CoB--CoM heterodisulfide reductase~SPTR: Iron-sulfur cluster-binding protein%3B~IMG reference gene:2505285361~PFAM: Cysteine-rich domain gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2024 Thein_2025 Thein_2025 Thein_2025 2093405 2094784 - FAD linked oxidase domain protein COGs: COG0277 FAD/FMN-containing dehydrogenase~InterPro IPR006094:IPR004113:IPR016166~KEGG: tye:THEYE_A0668 glycolate oxidase subunit~PFAM: FAD linked oxidase domain protein~SPTR: Glycolate oxidase subunit%3B~IMG reference gene:2505285362~PFAM: FAD binding domain%3B FAD linked oxidases%2C C-terminal domain~TIGRFAM: glycolate oxidase%2C subunit GlcD gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2025 Thein_2026 Thein_2026 Thein_2026 2094965 2096053 + Extracellular solute-binding protein%2C family 7 COGs: COG4663 TRAP-type mannitol/chloroaromatic compound transport system periplasmic component~InterPro IPR018389:IPR017909:IPR006311~KEGG: ttj:TTHA0196 transporter%2C periplasmic component~PFAM: Extracellular solute-binding protein%2C family 7~SPTR: Transporter%2C periplasmic component%3B~IMG reference gene:2505285363~PFAM: Bacterial extracellular solute-binding protein%2C family 7~TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2026 Thein_2027 Thein_2027 Thein_2027 2096209 2096475 + protein of unknown function UPF0016 COGs: COG2119 membrane protein~InterPro IPR001727~KEGG: amt:Amet_4793 hypothetical protein~PFAM: protein of unknown function UPF0016~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285364~PFAM: Uncharacterized protein family UPF0016 gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2027 Thein_2028 Thein_2028 Thein_2028 2096561 2098132 + glycosyl transferase family 39 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family~InterPro IPR003342~KEGG: dol:Dole_1440 glycosyl transferase family protein~PFAM: glycosyl transferase family 39~SPTR: Glycosyl transferase family 39%3B~IMG reference gene:2505285365~PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2028 Thein_2029 Thein_2029 Thein_2029 2098184 2098960 + formate dehydrogenase family accessory protein FdhD COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity~InterPro IPR003786~KEGG: dps:DP1777 formate dehydrogenase accessory protein~PFAM: formate dehydrogenase subunit FdhD~SPTR: Related to formate dehydrogenase accessory protein%3B~TIGRFAM: formate dehydrogenase family accessory protein FdhD~IMG reference gene:2505285366~PFAM: FdhD/NarQ family~TIGRFAM: formate dehydrogenase family accessory protein FdhD gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2029 Thein_2030 Thein_2030 Thein_2030 2098952 2099113 - Rubredoxin-type Fe(Cys)4 protein COGs: COG1773 Rubredoxin~InterPro IPR001052:IPR018527:IPR004039~KEGG: tnp:Tnap_0455 rubredoxin-type Fe(Cys)4 protein~PFAM: Rubredoxin-type Fe(Cys)4 protein~SPTR: Rubredoxin%3B~IMG reference gene:2505285367~PFAM: Rubredoxin gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2030 Thein_2031 Thein_2031 Thein_2031 2099191 2102658 + DNA polymerase III%2C alpha subunit COGs: COG0587 DNA polymerase III alpha subunit~InterProIPR004013:IPR011708:IPR004365:IPR003141:IPR 004805~KEGG: dak:DaAHT2_1400 DNA polymerase III%2C alpha subunit~PFAM: DNA polymerase III alpha subunit%3B PHP domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type~PRIAM: DNA-directed DNA polymerase~SMART: phosphoesterase PHP domain protein~SPTR: DNA polymerase III%2C alpha subunit%3B~TIGRFAM: DNA polymerase III%2C alpha subunit~IMG reference gene:2505285368~PFAM: Bacterial DNA polymerase III alpha subunit%3B PHP domain%3B OB-fold nucleic acid binding domain~TIGRFAM: DNA-directed DNA polymerase III (polc) gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2031 Thein_2032 Thein_2032 Thein_2032 2102676 2102978 + hypothetical protein KEGG: mfs:MFS40622_1358 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285369 gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2032 Thein_2033 Thein_2033 Thein_2033 2102959 2103102 + hypothetical protein KEGG: cbk:CLL_A1976 putative transcriptional regulator%2C Crp/Fnr family~SPTR: Putative transcriptional regulator%2C Crp/Fnr family%3B~IMG reference gene:2505285370 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2033 Thein_2034 Thein_2034 Thein_2034 2103086 2103589 + hypothetical protein KEGG: dal:Dalk_0099 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285371 gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2034 Thein_2035 Thein_2035 Thein_2035 2103630 2104580 + Radical SAM domain protein COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein~InterPro IPR016431:IPR007197~KEGG: gur:Gura_2282 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SPTR: Radical SAM domain protein%3B~IMG reference gene:2505285372~PFAM: Radical SAM superfamily gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2035 Thein_2036 Thein_2036 Thein_2036 2104582 2105223 + metallophosphoesterase InterPro IPR004843~KEGG: dol:Dole_0345 metallophosphoesterase~PFAM: metallophosphoesterase~SPTR: Metallophosphoesterase%3B~IMG reference gene:2505285373~PFAM: Calcineurin-like phosphoesterase gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2036 Thein_2037 Thein_2037 Thein_2037 2105239 2105730 + hypothetical protein KEGG: mxa:MXAN_0742 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285374 gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2037 Thein_2038 Thein_2038 Thein_2038 2105730 2106626 + tyrosine recombinase XerD COGs: COG4974 Site-specific recombinase XerD~InterPro IPR004107:IPR002104:IPR011932~KEGG: sat:SYN_00952 integrase/recombinase~PFAM: integrase family protein%3B integrase domain protein SAM domain protein~SPTR: Integrase/recombinase%3B~TIGRFAM: tyrosine recombinase XerD~IMG reference gene:2505285375~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family~TIGRFAM: tyrosine recombinase XerC%3B tyrosine recombinase XerD gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2038 Thein_2039 Thein_2039 Thein_2039 2106601 2108157 + Polynucleotide adenylyltransferase region COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR000644:IPR002646~KEGG: tjr:TherJR_1640 polynucleotide adenylyltransferase region~PFAM: Polynucleotide adenylyltransferase region%3B CBS domain containing protein~SPTR: Polynucleotide adenylyltransferase region%3B~IMG reference gene:2505285376~PFAM: CBS domain%3B Poly A polymerase head domain gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2039 Thein_2040 Thein_2040 Thein_2040 2108141 2108797 + peptidase M50 COGs: COG1994 Zn-dependent protease~InterPro IPR008915~KEGG: drt:Dret_0766 peptidase M50~PFAM: peptidase M50~SPTR: Peptidase M50%3B~IMG reference gene:2505285377~PFAM: Peptidase family M50 gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2040 Thein_2041 Thein_2041 Thein_2041 2108833 2109247 + pseudogene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2041 Thein_2042 Thein_2042 Thein_2042 2109244 2109834 - hypothetical protein KEGG: dat:HRM2_40610 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285379 gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2042 Thein_2043 Thein_2043 Thein_2043 2109839 2110633 - Proto-chlorophyllide reductase 57 kD subunit COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits~InterPro IPR017900:IPR013580:IPR006067:IPR017896~KEGG: dol:Dole_0748 proto-chlorophyllide reductase 57 kD subunit~PFAM: Proto-chlorophyllide reductase 57 kD subunit%3B nitrite and sulphite reductase 4Fe-4S region~SPTR: Proto-chlorophyllide reductase 57 kD subunit%3B~IMG reference gene:2505285380~PFAM: 4Fe-4S binding domain%3B Nitrite and sulphite reductase 4Fe-4S domain%3B Proto-chlorophyllide reductase 57 kD subunit gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2043 Thein_2044 Thein_2044 Thein_2044 2110630 2111361 - 4Fe-4S ferredoxin iron-sulfur binding domain protein InterPro IPR017900:IPR017896~KEGG: dak:DaAHT2_2337 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2505285381~PFAM: 4Fe-4S binding domain gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2044 Thein_2045 Thein_2045 Thein_2045 2111988 2114933 - glycoside hydrolase family 57 COGs: COG1543 conserved hypothetical protein~InterPro IPR004300~KEGG: pth:PTH_2228 hypothetical protein~PFAM: glycoside hydrolase family 57~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2505285382~PFAM: Domain of unknown function (DUF1957)%3B Glycosyl hydrolase family 57 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2045 Thein_2046 Thein_2046 Thein_2046 2114902 2116071 - Thiamine biosynthesis protein COGs: COG0301 Thiamine biosynthesis ATP pyrophosphatase~InterPro IPR020536~KEGG: pfu:PF1288 putative thiamin biosynthesis protein ThiI~PFAM: Thiamine biosynthesis protein-like~SPTR: Putative thiamin biosynthesis protein thiI%3B~IMG reference gene:2505285383~PFAM: Thiamine biosynthesis protein (ThiI) gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2046 Thein_2047 Thein_2047 Thein_2047 2116056 2116412 - AIG2 family protein COGs: COG2105 conserved hypothetical protein~InterPro IPR009288~KEGG: pmx:PERMA_0889 hypothetical protein~PFAM: AIG2 family protein~SPTR: Conserved protein%3B~IMG reference gene:2505285384~PFAM: AIG2-like family gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2047 Thein_2048 Thein_2048 Thein_2048 2116412 2117485 - MscS Mechanosensitive ion channel COGs: COG3264 Small-conductance mechanosensitive channel~InterPro IPR006685~KEGG: hma:rrnAC3218 mechanosensitive ion channel~PFAM: MscS Mechanosensitive ion channel~SPTR: Mechanosensitive ion channel%3B~IMG reference gene:2505285385~PFAM: Mechanosensitive ion channel gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2048 Thein_2049 Thein_2049 Thein_2049 2117611 2118456 + hypothetical protein KEGG: caa:Caka_2052 protein of unknown function DUF1568~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285386~PFAM: Transposase IS200 like gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2049 Thein_2050 Thein_2050 Thein_2050 2118799 2119620 + phosphoribosylformylglycinamidine synthase I COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain~InterPro IPR010075:IPR017926~KEGG: dak:DaAHT2_0635 phosphoribosylformylglycinamidine synthase~PRIAM: Phosphoribosylformylglycinamidine synthase~SPTR: Phosphoribosylformylglycinamidine synthase%3B~TIGRFAM: phosphoribosylformylglycinamidine synthase I~IMG reference gene:2505285387~TIGRFAM: phosphoribosylformylglycinamidine synthase I gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2050 Thein_2051 Thein_2051 Thein_2051 2119627 2120349 + Sec-independent periplasmic protein translocase COGs: COG0805 Sec-independent protein secretion pathway component TatC~InterPro IPR002033~KEGG: dps:DP1763 sec-independent protein translocase protein TatC~PFAM: Sec-independent periplasmic protein translocase~SPTR: Related to Sec-independent protein translocase protein TatC%3B~IMG reference gene:2505285388~PFAM: Sec-independent protein translocase protein (TatC)~TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2051 Thein_2052 Thein_2052 Thein_2052 2120691 2122163 - Gamma-glutamyltransferase COGs: COG0405 Gamma-glutamyltransferase~InterPro IPR000101:IPR017441~KEGG: pmx:PERMA_0102 gamma-glutamyltransferase~PFAM: gamma-glutamyltranspeptidase~PRIAM: Gamma-glutamyltransferase~SPTR: Gamma-glutamyltransferase%3B~IMG reference gene:2505285389~PFAM: Gamma-glutamyltranspeptidase~TIGRFAM: gamma-glutamyltranspeptidase gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2052 Thein_2053 Thein_2053 Thein_2053 2122160 2123281 - glutamate--cysteine ligase GCS2 COGs: COG2170 conserved hypothetical protein~InterPro IPR006336:IPR011793~KEGG: gvi:gll2294 hypothetical protein~PFAM: glutamate--cysteine ligase GCS2~SPTR: Carboxylate-amine ligase gll2294%3B~IMG reference gene:2505285390~PFAM: Glutamate-cysteine ligase family 2(GCS2)~TIGRFAM: carboxylate-amine ligase%2C YbdK family gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2053 Thein_2054 Thein_2054 Thein_2054 2123259 2124431 - amidohydrolase COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase~InterPro IPR017439:IPR002933:IPR011650:IPR010168~KEGG: ava:Ava_4094 peptidase M20D%2C amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein~PRIAM: N-acetyldiaminopimelate deacetylase~SPTR: Peptidase M20D%2C amidohydrolase%3B~TIGRFAM: amidohydrolase~IMG reference gene:2505285391~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain~TIGRFAM: amidohydrolase gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2054 Thein_2055 Thein_2055 Thein_2055 2124644 2125024 + desulfoferrodoxin COGs: COG2033 Desulfoferrodoxin~InterPro IPR004462:IPR002742:IPR004793~KEGG: dak:DaAHT2_2068 desulfoferrodoxin~PFAM: Desulfoferrodoxin ferrous iron-binding region%3B Desulfoferrodoxin Dfx domain protein~SPTR: Desulfoferrodoxin%3B~TIGRFAM: desulfoferrodoxin~IMG reference gene:2505285392~PFAM: Desulfoferrodoxin%3B Desulfoferrodoxin%2C N-terminal domain~TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain%3B desulfoferrodoxin%3B desulfoferrodoxin ferrous iron-binding domain gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2055 Thein_2056 Thein_2056 Thein_2056 2125289 2126491 + flavodoxin/nitric oxide synthase COGs: COG0426 flavoprotein~InterPro IPR016440:IPR008254~KEGG: dak:DaAHT2_2067 flavodoxin/nitric oxide synthase~PFAM: flavodoxin/nitric oxide synthase~SPTR: Flavodoxin/nitric oxide synthase%3B~IMG reference gene:2505285393~PFAM: Flavodoxin%3B Metallo-beta-lactamase superfamily gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2056 Thein_2057 Thein_2057 Thein_2057 2126484 2127194 + hypothetical protein KEGG: dal:Dalk_2376 hypothetical protein~SPTR: HEAT%3B~IMG reference gene:2505285394 gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2057 Thein_2058 Thein_2058 Thein_2058 2127333 2128478 + lysine 2%2C3-aminomutase YodO family protein COGs: COG1509 Lysine 2 3-aminomutase~InterPro IPR003739:IPR007197~KEGG: kol:Kole_1669 lysine 2%2C3-aminomutase YodO family protein~PFAM: Radical SAM domain protein~PRIAM: Lysine 2%2C3-aminomutase~SPTR: Lysine 2%2C3-aminomutase YodO family protein%3B~TIGRFAM: lysine 2%2C3-aminomutase YodO family protein~IMG reference gene:2505285395~PFAM: Radical SAM superfamily~TIGRFAM: KamA family protein gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2058 Thein_2059 Thein_2059 Thein_2059 2128517 2129158 + PHP domain protein COGs: COG0613 metal-dependent phosphoesterase (PHP family)~InterPro IPR004013:IPR003141~KEGG: dal:Dalk_3059 PHP domain protein~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein~SPTR: PHP domain protein%3B~IMG reference gene:2505285396~PFAM: PHP domain gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2059 Thein_2060 Thein_2060 Thein_2060 2129142 2129741 - protein of unknown function UPF0278 COGs: COG1458 DNA-binding protein containing PIN domain~InterPro IPR014856~KEGG: tye:THEYE_A0318 hypothetical protein~SPTR: UPF0278 protein kuste3487%3B~TIGRFAM: protein of unknown function UPF0278~IMG reference gene:2505285397~PFAM: UPF0278 family~TIGRFAM: RNA ligase partner%2C MJ_0950 family gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2060 Thein_2061 Thein_2061 Thein_2061 2129877 2131469 - methyl-accepting chemotaxis sensory transducer with Cache sensor COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR013163:IPR004089:IPR000727:IPR003660~KEGG: tna:CTN_1065 methyl-accepting chemotaxis protein 4~PFAM: chemotaxis sensory transducer%3B Cache type 2 domain protein~SMART: chemotaxis sensory transducer~SPTR: Methyl-accepting chemotaxis protein 4%3B~IMG reference gene:2505285398~PFAM: Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2061 Thein_2062 Thein_2062 Thein_2062 2131613 2132962 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterProIPR020441:IPR002078:IPR001789:IPR002197:IPR 003593~KEGG: dvm:DvMF_0700 two component%2C sigma54 specific%2C transcriptional regulator%2C fis family~PFAM: sigma-54 factor interaction domain-containing protein%3B response regulator receiver%3B helix-turn-helix Fis-type~SMART: response regulator receiver%3B AAA ATPase~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2505285399~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2062 Thein_2063 Thein_2063 Thein_2063 2132963 2134393 - integral membrane sensor signal transduction histidine kinase COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system~InterProIPR004358:IPR003660:IPR003661:IPR003594:IPR 005467~KEGG: dvm:DvMF_0701 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2505285400~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2063 Thein_2064 Thein_2064 Thein_2064 2134409 2134789 - response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: tye:THEYE_A0743 response regulator HsfA~PFAM: response regulator receiver~SMART: response regulator receiver~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505285401~PFAM: Response regulator receiver domain gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2064 Thein_2065 Thein_2065 Thein_2065 2134776 2137346 - pyruvate phosphate dikinase PEP/pyruvate-binding protein COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase~InterPro IPR002192:IPR008279~KEGG: dvm:DvMF_0705 pyruvate%2C water dikinase~PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding%3B PEP-utilising protein mobile region~SPTR: Pyruvate%2C water dikinase%3B~IMG reference gene:2505285402~PFAM: PEP-utilising enzyme%2C mobile domain%3B Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2065 Thein_2066 Thein_2066 Thein_2066 2137346 2138128 - hypothetical protein InterPro IPR019088~KEGG: dvm:DvMF_0704 hypothetical protein~PFAM: hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285403~PFAM: Putative transmembrane protein (Alph_Pro_TM)~TIGRFAM: conserved hypothetical protein gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2066 Thein_2067 Thein_2067 Thein_2067 2138128 2139072 - protein of unknown function DUF81 COGs: COG0730 permease~InterPro IPR002781~KEGG: dvm:DvMF_0703 protein of unknown function DUF81~PFAM: protein of unknown function DUF81~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285404~PFAM: Sulfite exporter TauE/SafE gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2067 Thein_2068 Thein_2068 Thein_2068 2139091 2139540 - hypothetical protein KEGG: hsa:6249 CAP-GLY domain containing linker protein 1~SPTR: Restin isoform a variant%3B~IMG reference gene:2505285405 gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2068 Thein_2069 Thein_2069 Thein_2069 2140148 2143165 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterProIPR013027:IPR017900:IPR006076:IPR003953:IPR 017896~KEGG: adg:Adeg_1885 4Fe-4S ferredoxin iron-sulfur binding domain protein~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD dependent oxidoreductase~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2505285406~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B FAD dependent oxidoreductase gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2069 Thein_2070 Thein_2070 Thein_2070 2143175 2143609 + methyl-viologen-reducing hydrogenase delta subunit COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit~InterPro IPR003813~KEGG: adg:Adeg_1332 methyl-viologen-reducing hydrogenase delta subunit~PFAM: methyl-viologen-reducing hydrogenase delta subunit~SPTR: Methyl-viologen-reducing hydrogenase delta subunit%3B~IMG reference gene:2505285407~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2070 Thein_2071 Thein_2071 Thein_2071 2143606 2144589 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR017900:IPR017896~KEGG: sfu:Sfum_1972 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B~IMG reference gene:2505285408~PFAM: Coenzyme F420 hydrogenase/dehydrogenase%2C beta subunit C terminus gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2071 Thein_2072 Thein_2072 Thein_2072 2144586 2145563 + 4Fe-4S ferredoxin%2C iron-sulfur binding protein InterPro IPR017900:IPR017896~KEGG: slp:Slip_2070 4Fe-4S ferredoxin%2C iron-sulfur binding protein~SPTR: Ferredoxin%3B~IMG reference gene:2505285409 gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2072 Thein_2073 Thein_2073 Thein_2073 2145563 2146372 + oxidoreductase FAD/NAD(P)-binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterProIPR001834:IPR012165:IPR008333:IPR001433:IPR 019480:IPR017927~KEGG: dae:Dtox_1281 oxidoreductase FAD/NAD(P)-binding domain protein~PFAM: oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein%3B~IMG reference gene:2505285410~PFAM: Oxidoreductase FAD-binding domain%3B Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2073 Thein_2074 Thein_2074 Thein_2074 2146347 2146802 - hemerythrin-like metal-binding protein COGs: COG2703 Hemerythrin~InterPro IPR012312:IPR012827~KEGG: mgm:Mmc1_1585 methyl-accepting chemotaxis sensory transducer~PFAM: Hemerythrin HHE cation binding domain protein~SPTR: Hemerythrin-like%2C metal-binding%3B~TIGRFAM: hemerythrin-like metal-binding protein~IMG reference gene:2505285411~PFAM: Hemerythrin HHE cation binding domain~TIGRFAM: hemerythrin-like metal-binding domain gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2074 Thein_2075 Thein_2075 Thein_2075 2146865 2147716 + Rhomboid family protein InterPro IPR002610~KEGG: geo:Geob_1665 rhomboid family protein~PFAM: Rhomboid family protein~SPTR: Rhomboid family protein%3B~IMG reference gene:2505285412~PFAM: Rhomboid family gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2075 Thein_2076 Thein_2076 Thein_2076 2147761 2148681 + hypothetical protein KEGG: tye:THEYE_A1270 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285413 gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2076 Thein_2077 Thein_2077 Thein_2077 2148873 2149379 + hypothetical protein KEGG: ddf:DEFDS_0397 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285414 gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2077 Thein_2078 Thein_2078 Thein_2078 2149456 2150610 + pseudogene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2078 Thein_2079 Thein_2079 Thein_2079 2150887 2153532 + alanyl-tRNA synthetase COGs: COG0013 Alanyl-tRNA synthetase~InterProIPR018164:IPR018152:IPR012947:IPR003156:IPR 018165:IPR002318~KEGG: sat:SYN_02026 alanyl-tRNA synthetase~PFAM: Alanyl-tRNA synthetase%2C class IIc-like%3B Threonyl/alanyl tRNA synthetase SAD%3B phosphoesterase DHHA1~SPTR: Alanyl-tRNA synthetase%3B~TIGRFAM: alanyl-tRNA synthetase~IMG reference gene:2505285416~PFAM: DHHA1 domain%3B Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetases class II (A)~TIGRFAM: alanine--tRNA ligase gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2079 Thein_2080 Thein_2080 Thein_2080 2153563 2154606 - hypothetical protein KEGG: pin:Ping_1776 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285417 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2080 Thein_2081 Thein_2081 Thein_2081 2154660 2157932 - NAD pyrophosphatase/5'-nucleotidase NadN COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase~InterPro IPR006179:IPR004843:IPR008334:IPR006420~KEGG: dat:HRM2_09650 UshA~PFAM: 5'-Nucleotidase domain-containing protein%3B metallophosphoesterase~SPTR: NAD pyrophosphatase/5'-nucleotidase NadN%3B~TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN~IMG reference gene:2505285418~PFAM: Calcineurin-like phosphoesterase%3B 5'-nucleotidase%2C C-terminal domain~TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2081 Thein_2082 Thein_2082 Thein_2082 2158078 2158929 + diacylglycerol kinase catalytic region InterPro IPR001206~KEGG: avn:Avin_44360 hypothetical protein~PFAM: diacylglycerol kinase catalytic region~SPTR: DAG-kinase catalytic domain (Presumed)%3B~IMG reference gene:2505285419~PFAM: Diacylglycerol kinase catalytic domain gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2082 Thein_2083 Thein_2083 Thein_2083 2158934 2159506 + acetyltransferase COGs: COG0110 Acetyltransferase (isoleucine patch superfamily)~InterPro IPR001451~KEGG: pat:Patl_4048 acetyltransferase~SPTR: Acetyltransferase (Isoleucine patch superfamily)-like%3B~IMG reference gene:2505285420 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2083 Thein_2084 Thein_2084 Thein_2084 2159540 2160301 + ABC transporter related protein COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003439:IPR003593~KEGG: dol:Dole_0836 ABC transporter-related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter-related protein%3B~IMG reference gene:2505285421~PFAM: ABC transporter%3B Branched-chain amino acid ATP-binding cassette transporter gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2084 Thein_2085 Thein_2085 Thein_2085 2160301 2161035 + ABC transporter related protein COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: glo:Glov_1865 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: ABC transporter related%3B~IMG reference gene:2505285422~PFAM: ABC transporter gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2085 Thein_2086 Thein_2086 Thein_2086 2161045 2162325 + Phenylacetate--CoA ligase COGs: COG1541 Coenzyme F390 synthetase~InterPro IPR000873~KEGG: dal:Dalk_1704 phenylacetate--CoA ligase~PFAM: AMP-dependent synthetase and ligase~PRIAM: Phenylacetate--CoA ligase~SPTR: Phenylacetate--CoA ligase%3B~IMG reference gene:2505285423~PFAM: AMP-binding enzyme gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2086 Thein_2087 Thein_2087 Thein_2087 2162326 2163010 - pseudogene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2087 Thein_2088 Thein_2088 Thein_2088 2163204 2164274 - membrane-associated zinc metalloprotease COGs: COG0750 membrane-associated Zn-dependent protease 1~InterPro IPR008915:IPR001478:IPR004387~KEGG: sfu:Sfum_1785 putative membrane-associated zinc metalloprotease~PFAM: peptidase M50%3B PDZ/DHR/GLGF domain protein~SMART: PDZ/DHR/GLGF domain protein~SPTR: RseP peptidase. Metallo peptidase. MEROPS family M50B%3B~TIGRFAM: membrane-associated zinc metalloprotease~IMG reference gene:2505285425~PFAM: Peptidase family M50%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: RIP metalloprotease RseP gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2088 Thein_2089 Thein_2089 Thein_2089 2164274 2165437 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase~InterPro IPR003821:IPR013512:IPR013644~KEGG: pca:Pcar_1915 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein~PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase~SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~IMG reference gene:2505285426~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2089 Thein_2090 Thein_2090 Thein_2090 2165430 2166212 - phosphatidate cytidylyltransferase COGs: COG0575 CDP-diglyceride synthetase~InterPro IPR000374~KEGG: glo:Glov_2713 phosphatidate cytidylyltransferase~PFAM: phosphatidate cytidylyltransferase~SPTR: Phosphatidate cytidylyltransferase%3B~IMG reference gene:2505285427~PFAM: Cytidylyltransferase family gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2090 Thein_2091 Thein_2091 Thein_2091 2166205 2166942 - undecaprenyl diphosphate synthase COGs: COG0020 Undecaprenyl pyrophosphate synthase~InterPro IPR001441:IPR018520~KEGG: hmo:HM1_2261 undecaprenyl diphosphate synthase%2C putative~PFAM: Di-trans-poly-cis-decaprenylcistransferase~PRIAM: Di-trans%2Cpoly-cis-decaprenylcistransferase~SPTR: Undecaprenyl diphosphate synthase%2C putative%3B~TIGRFAM: undecaprenyl diphosphate synthase~IMG reference gene:2505285428~PFAM: Putative undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2091 Thein_2092 Thein_2092 Thein_2092 2166942 2167499 - ribosome recycling factor COGs: COG0233 Ribosome recycling factor~InterPro IPR015998:IPR002661~KEGG: dtu:Dtur_1200 ribosome recycling factor~PFAM: ribosome recycling factor~SPTR: Ribosome-recycling factor%3B~TIGRFAM: ribosome recycling factor~IMG reference gene:2505285429~PFAM: Ribosome recycling factor~TIGRFAM: ribosome recycling factor gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2092 Thein_2093 Thein_2093 Thein_2093 2167496 2168224 - uridylate kinase COGs: COG0528 Uridylate kinase~InterPro IPR011817:IPR001048:IPR015963~KEGG: sfu:Sfum_1780 uridylate kinase~PFAM: aspartate/glutamate/uridylate kinase~SPTR: Uridylate kinase%3B~TIGRFAM: uridylate kinase~IMG reference gene:2505285430~PFAM: Amino acid kinase family~TIGRFAM: uridylate kinase gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2093 Thein_2094 Thein_2094 Thein_2094 2168224 2168823 - translation elongation factor Ts COGs: COG0264 Translation elongation factor Ts~InterPro IPR001816:IPR018101:IPR000449:IPR014039~KEGG: dak:DaAHT2_0968 translation elongation factor Ts~PFAM: Translation elongation factor EFTs/EF1B dimerisation%3B ubiquitin-associated- domain-containing protein~SPTR: Translation elongation factor Ts%3B~TIGRFAM: translation elongation factor Ts~IMG reference gene:2505285431~PFAM: Elongation factor TS%3B UBA/TS-N domain~TIGRFAM: translation elongation factor Ts gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2094 Thein_2095 Thein_2095 Thein_2095 2168855 2169706 - ribosomal protein S2 COGs: COG0052 Ribosomal protein S2~InterPro IPR001865:IPR018130:IPR005706~KEGG: drt:Dret_1941 ribosomal protein S2~PFAM: ribosomal protein S2~SPTR: 30S ribosomal protein S2%3B~TIGRFAM: ribosomal protein S2~IMG reference gene:2505285432~PFAM: Ribosomal protein S2~TIGRFAM: ribosomal protein S2%2C bacterial type gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2095 Thein_2096 Thein_2096 Thein_2096 2170094 2172433 - flagellar hook-basal body protein COGs: COG1749 Flagellar hook protein FlgE~InterPro IPR011491:IPR010930:IPR020013~KEGG: dal:Dalk_1015 protein of unknown function DUF1078 domain protein~PFAM: protein of unknown function DUF1078 domain protein%3B flagellar basal body FlaE domain protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: fagellar hook-basal body protein~IMG reference gene:2505285433~PFAM: Domain of unknown function (DUF1078)%3B Flagellar basal body protein FlaE~TIGRFAM: fagellar hook-basal body proteins gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2096 Thein_2097 Thein_2097 Thein_2097 2172579 2173898 - flagellar hook-basal body protein COGs: COG1749 Flagellar hook protein FlgE~InterPro IPR019776:IPR011491:IPR020013~KEGG: dvm:DvMF_1808 protein of unknown function DUF1078 domain protein~PFAM: flagellar basal body FlaE domain protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: fagellar hook-basal body protein~IMG reference gene:2505285434~PFAM: Flagellar basal body protein FlaE~TIGRFAM: fagellar hook-basal body proteins gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2097 Thein_2098 Thein_2098 Thein_2098 2173898 2174578 - flagellar hook capping protein COGs: COG1843 Flagellar hook capping protein~InterPro IPR005648~KEGG: tle:Tlet_1819 flagellar hook capping protein~PFAM: flagellar hook capping protein~SPTR: Flagellar hook capping protein%3B~IMG reference gene:2505285435~PFAM: Flagellar hook capping protein gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2098 Thein_2099 Thein_2099 Thein_2099 2174589 2176079 - Flagellar hook-length control protein-like%2C C-terminal domain protein InterPro IPR021136~KEGG: cjr:CJE0040 hypothetical protein~PFAM: Flagellar hook-length control protein-like%2C C-terminal domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285436~PFAM: Flagellar hook-length control protein FliK gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2099 Thein_2100 Thein_2100 Thein_2100 2176527 2179145 + ATP-dependent chaperone ClpB COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR001270:IPR018368:IPR004176:IPR003959:IPR 013093:IPR019489:IPR003593:IPR017730~KEGG: tye:THEYE_A1928 chaperone ClpB 1~PFAM: ATPase AAA-2 domain protein%3B AAA ATPase central domain protein%3B Clp domain protein%3B Clp ATPase-like~SMART: AAA ATPase~SPTR: Chaperone ClpB 1%3B~TIGRFAM: ATP-dependent chaperone ClpB~IMG reference gene:2505285437~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B Clp amino terminal domain%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent chaperone ClpB%3B type VI secretion ATPase%2C ClpV1 family gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2100 Thein_2101 Thein_2101 Thein_2101 2179197 2179898 - dethiobiotin synthase COGs: COG0132 Dethiobiotin synthetase~InterPro IPR004472~KEGG: nmc:NMC0686 dithiobiotin synthetase~SPTR: Dethiobiotin synthetase%3B~TIGRFAM: dethiobiotin synthase~IMG reference gene:2505285438~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain~TIGRFAM: dethiobiotin synthase gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2101 Thein_2102 Thein_2102 Thein_2102 2179895 2180632 - Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: plt:Plut_2067 biotin biosynthesis protein BioC~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285439~PFAM: Methyltransferase domain~TIGRFAM: biotin biosynthesis protein BioC gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2102 Thein_2103 Thein_2103 Thein_2103 2180639 2181283 - protein of unknown function DUF452 COGs: COG2830 conserved hypothetical protein~InterPro IPR007398~KEGG: bfs:BF1615 putative biotin synthesis-related fusion protein~PFAM: protein of unknown function DUF452~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285440~PFAM: Protein of unknown function (DUF452) gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2103 Thein_2104 Thein_2104 Thein_2104 2181293 2182876 - aminoglycoside phosphotransferase COGs: COG2187 conserved hypothetical protein~InterPro IPR002575~KEGG: tye:THEYE_A1962 Uma3~PFAM: aminoglycoside phosphotransferase~SPTR: Uma3%3B~IMG reference gene:2505285441~PFAM: Chromatin associated protein KTI12 gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2104 Thein_2105 Thein_2105 Thein_2105 2182892 2183893 - tryptophanyl-tRNA synthetase COGs: COG0180 Tryptophanyl-tRNA synthetase~InterPro IPR002306:IPR001412:IPR002305~KEGG: geo:Geob_3016 tryptophanyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib~PRIAM: Tryptophan--tRNA ligase~SPTR: Tryptophanyl-tRNA synthetase%3B~TIGRFAM: tryptophanyl-tRNA synthetase~IMG reference gene:2505285442~PFAM: tRNA synthetases class I (W and Y)~TIGRFAM: tryptophanyl-tRNA synthetase gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2105 Thein_2106 Thein_2106 Thein_2106 2184400 2185101 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005833:IPR005834:IPR006439~KEGG: phe:Phep_1975 haloacid dehalogenase domain protein hydrolase~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: Haloacid dehalogenase domain protein hydrolase%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~IMG reference gene:2505285443~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2106 Thein_2107 Thein_2107 Thein_2107 2185182 2185589 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR017900:IPR017896~KEGG: tpe:Tpen_1816 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B~IMG reference gene:2505285444~PFAM: 4Fe-4S binding domain gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2107 Thein_2108 Thein_2108 Thein_2108 2185589 2187355 + Aldehyde ferredoxin oxidoreductase COGs: COG2414 Aldehyde:ferredoxin oxidoreductase~InterPro IPR013983:IPR001203~KEGG: tye:THEYE_A0591 aldehyde ferredoxin oxidoreductase~PFAM: aldehyde ferredoxin oxidoreductase%3B Aldehyde ferredoxin oxidoreductase~PRIAM: Aldehyde ferredoxin oxidoreductase~SMART: Aldehyde ferredoxin oxidoreductase~SPTR: Aldehyde ferredoxin oxidoreductase%3B~IMG reference gene:2505285445~PFAM: Aldehyde ferredoxin oxidoreductase%2C N-terminal domain%3B Aldehyde ferredoxin oxidoreductase%2C domains 2 %26 3 gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2108 Thein_2109 Thein_2109 Thein_2109 2187352 2187576 + hypothetical protein KEGG: apo:Arcpr_1635 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285446 gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2109 Thein_2110 Thein_2110 Thein_2110 2187602 2189410 - Aldehyde ferredoxin oxidoreductase COGs: COG2414 Aldehyde:ferredoxin oxidoreductase~InterPro IPR013983:IPR001203~KEGG: cpo:COPRO5265_0137 tungsten-containing aldehyde ferredoxin oxidoreductase~PFAM: aldehyde ferredoxin oxidoreductase%3B Aldehyde ferredoxin oxidoreductase~PRIAM: Aldehyde ferredoxin oxidoreductase~SMART: Aldehyde ferredoxin oxidoreductase~SPTR: Tungsten-containing aldehyde ferredoxin oxidoreductase%3B~IMG reference gene:2505285447~PFAM: Aldehyde ferredoxin oxidoreductase%2C N-terminal domain%3B Aldehyde ferredoxin oxidoreductase%2C domains 2 %26 3 gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2110 Thein_2111 Thein_2111 Thein_2111 2189899 2191830 - selenocysteine-specific translation elongation factor COGs: COG3276 Selenocysteine-specific translation elongation factor~InterProIPR000795:IPR005829:IPR004161:IPR015190:IPR 015191:IPR005225:IPR004535~KEGG: sfu:Sfum_1220 selenocysteine-specific translation elongation factor~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B Elongation factor SelB winged helix 2%3B Elongation factor SelB winged helix 3~PRIAM: Sulfate adenylyltransferase~SPTR: Selenocysteine-specific translation elongation factor SelB%3B~TIGRFAM: selenocysteine-specific translation elongation factor%3B small GTP-binding protein~IMG reference gene:2505285448~PFAM: Elongation factor Tu domain 2%3B Elongation factor Tu GTP binding domain%3B Elongation factor SelB%2C winged helix~TIGRFAM: selenocysteine-specific elongation factor SelB%3B small GTP-binding protein domain%3B translation elongation factor TU gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2111 Thein_2112 Thein_2112 Thein_2112 2191840 2192385 - peptidase zinc-dependent COGs: COG1913 Zn-dependent protease~InterPro IPR012091:IPR012962~KEGG: dth:DICTH_1693 hypothetical protein~PFAM: peptidase zinc-dependent~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285449~PFAM: Peptidase family M54 gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2112 Thein_2113 Thein_2113 Thein_2113 2192444 2192980 - methyltransferase type 12 KEGG: dal:Dalk_0810 methyltransferase type 12~SPTR: Methyltransferase type 12%3B~IMG reference gene:2505285450 gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2113 Thein_2114 Thein_2114 Thein_2114 2192977 2193678 - chromosome segregation and condensation protein ScpA COGs: COG1354 conserved hypothetical protein~InterPro IPR003768~KEGG: gme:Gmet_1959 condensin subunit ScpA~PFAM: chromosome segregation and condensation protein ScpA~SPTR: Condensin subunit ScpA%3B~IMG reference gene:2505285451~PFAM: ScpA/B protein gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2114 Thein_2115 Thein_2115 Thein_2115 2193718 2194314 - hypothetical protein KEGG: dol:Dole_1955 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285452 gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2115 Thein_2116 Thein_2116 Thein_2116 2194570 2194989 + Uncharacterized protein family UPF0066 COGs: COG1720 conserved hypothetical protein~InterPro IPR001378~KEGG: tye:THEYE_A1086 hypothetical protein~PFAM: Uncharacterised protein family UPF0066~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285453~PFAM: Uncharacterised protein family UPF0066~TIGRFAM: putative methyltransferase%2C YaeB/AF_0241 family gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2116 Thein_2117 Thein_2117 Thein_2117 2194989 2195456 + protein of unknown function DUF163 COGs: COG1576 conserved hypothetical protein~InterPro IPR003742~KEGG: sub:SUB1867 rRNA large subunit methyltransferase~PFAM: protein of unknown function DUF163~SPTR: Ribosomal RNA large subunit methyltransferase H%3B~IMG reference gene:2505285454~PFAM: Predicted SPOUT methyltransferase~TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2117 Thein_2118 Thein_2118 Thein_2118 2195453 2196319 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: dal:Dalk_2812 glycosyl transferase family 2~PFAM: glycosyl transferase family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2505285455~PFAM: Glycosyl transferase family 2 gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2118 Thein_2119 Thein_2119 Thein_2119 2196337 2196681 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: hoh:Hoch_6704 response regulator receiver modulated PilZ sensor protein~PFAM: type IV pilus assembly PilZ~SPTR: Response regulator receiver modulated PilZ sensor protein%3B~IMG reference gene:2505285456~PFAM: PilZ domain gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2119 Thein_2120 Thein_2120 Thein_2120 2196678 2198585 - methionyl-tRNA synthetase COGs: COG0143 Methionyl-tRNA synthetase~InterProIPR014758:IPR015413:IPR002547:IPR002304:IPR 004495~KEGG: dal:Dalk_0026 methionyl-tRNA synthetase~PFAM: tRNA synthetase class I (M)%3B t-RNA-binding domain-containing protein~SPTR: Methionyl-tRNA synthetase%3B~TIGRFAM: methionyl-tRNA synthetase%3B methionyl-tRNA synthetase%2C beta subunit~IMG reference gene:2505285457~PFAM: Anticodon-binding domain%3B tRNA synthetases class I (M)%3B Putative tRNA binding domain~TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain%3B methionyl-tRNA synthetase gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2120 Thein_2121 Thein_2121 Thein_2121 2198589 2199509 - PSP1 domain protein COGs: COG1774 Uncharacterized homolog of PSP1~InterPro IPR007557~KEGG: hor:Hore_20350 PSP1 domain protein~PFAM: PSP1 domain protein~SPTR: PSP1 domain protein%3B~IMG reference gene:2505285458~PFAM: PSP1 C-terminal conserved region gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2121 Thein_2122 Thein_2122 Thein_2122 2199710 2200033 + hypothetical protein KEGG: vvi:100244477 hypothetical protein LOC100244477~SPTR: Whole genome shotgun sequence of line PN40024%2C scaffold_9.assembly12x%3B~IMG reference gene:2505285459 gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2122 Thein_2123 Thein_2123 Thein_2123 2199990 2200631 - Phosphoribosylanthranilate isomerase COGs: COG0135 Phosphoribosylanthranilate isomerase~InterPro IPR001240~KEGG: tye:THEYE_A0943 N-(5'phosphoribosyl)anthranilate isomerase~PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)~PRIAM: Phosphoribosylanthranilate isomerase~SPTR: N-(5'-phosphoribosyl)anthranilate isomerase%3B~IMG reference gene:2505285460~PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2123 Thein_2124 Thein_2124 Thein_2124 2200636 2202123 - type II secretion system protein E COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB~InterPro IPR001482:IPR007831:IPR003593~KEGG: dat:HRM2_30260 GspE3~PFAM: type II secretion system protein E%3B General secretory system II protein E domain protein~SMART: AAA ATPase~SPTR: GspE3%3B~IMG reference gene:2505285461~PFAM: Type II/IV secretion system protein gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2124 Thein_2125 Thein_2125 Thein_2125 2202126 2202548 - general secretion pathway protein G COGs: COG2165 Type II secretory pathway pseudopilin PulG~InterPro IPR000983:IPR012902:IPR013545:IPR010054~KEGG: tbd:Tbd_1293 tyep II secretion system protein G~PFAM: type II secretion system protein G~SPTR: Tyep II secretion system protein G%3B~TIGRFAM: general secretion pathway protein G~IMG reference gene:2505285462~PFAM: Prokaryotic N-terminal methylation motif%3B Bacterial type II secretion system protein G~TIGRFAM: general secretion pathway protein G%3B prepilin-type N-terminal cleavage/methylation domain gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2125 Thein_2126 Thein_2126 Thein_2126 2202557 2203756 - Type II secretion system F domain protein COGs: COG1459 Type II secretory pathway component PulF~InterPro IPR003004:IPR018076~KEGG: alv:Alvin_3015 type II secretion system F domain protein~PFAM: Type II secretion system F domain~SPTR: Type II secretion system F domain protein%3B~IMG reference gene:2505285463~PFAM: Bacterial type II secretion system protein F domain gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2126 Thein_2127 Thein_2127 Thein_2127 2203758 2204924 - Fimbrial assembly family protein InterPro IPR007813~KEGG: sfu:Sfum_3660 fimbrial assembly family protein~PFAM: Fimbrial assembly family protein~SPTR: Fimbrial assembly family protein%3B~IMG reference gene:2505285464~PFAM: Fimbrial assembly protein (PilN) gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2127 Thein_2128 Thein_2128 Thein_2128 2204943 2205509 - hypothetical protein KEGG: sai:Saci_1035 ABC transporter~SPTR: ABC transporter%3B~IMG reference gene:2505285465 gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2128 Thein_2129 Thein_2129 Thein_2129 2205512 2206027 - hypothetical protein KEGG: nwa:Nwat_2351 hypothetical protein~SPTR: High molecular weight basic nuclear protein%3B~IMG reference gene:2505285466 gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2129 Thein_2130 Thein_2130 Thein_2130 2206052 2206474 + hypothetical protein InterPro IPR001120:IPR012902~KEGG: sun:SUN_0022 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285467~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2130 Thein_2131 Thein_2131 Thein_2131 2206474 2206929 + hypothetical protein InterPro IPR001120:IPR010916:IPR012902~KEGG: sfu:Sfum_3664 general secretion pathway protein H~SPTR: General secretion pathway protein H%3B~IMG reference gene:2505285468~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2131 Thein_2132 Thein_2132 Thein_2132 2206967 2207659 + hypothetical protein KEGG: sfu:Sfum_3661 type II secretory pathway component PulK-like~SPTR: Similar to general secretory pathway protein K%3B~IMG reference gene:2505285469~PFAM: General secretion pathway protein K gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2132 Thein_2133 Thein_2133 Thein_2133 2207695 2209785 + general secretion pathway protein D COGs: COG1450 Type II secretory pathway component PulD~InterProIPR001775:IPR001814:IPR005644:IPR004846:IPR 013356~KEGG: ara:Arad_9991 general secretion pathway protein D~PFAM: type II and III secretion system protein%3B NolW domain protein~SPTR: General secretion pathway protein D%3B~TIGRFAM: general secretion pathway protein D~IMG reference gene:2505285470~PFAM: Bacterial type II/III secretion system short domain%3B Bacterial type II and III secretion system protein~TIGRFAM: general secretion pathway protein D gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2133 Thein_2134 Thein_2134 Thein_2134 2209824 2210393 + hypothetical protein InterPro IPR012902~KEGG: hth:HTH_0660 hypothetical protein~SPTR: 5-oxoprolinase%3B~IMG reference gene:2505285471~TIGRFAM: prepilin-type N-terminal cleavage/methylation domain gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2134 Thein_2135 Thein_2135 Thein_2135 2210539 2211876 - hypothetical protein KEGG: geo:Geob_3815 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285472 gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2135 Thein_2136 Thein_2136 Thein_2136 2212759 2214039 + seryl-tRNA synthetase COGs: COG0172 Seryl-tRNA synthetase~InterProIPR018156:IPR002317:IPR015866:IPR002314:IPR 006195~KEGG: gme:Gmet_3528 seryl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Seryl-tRNA synthetase%2C class IIa-like~PRIAM: Serine--tRNA ligase~SPTR: Seryl-tRNA synthetase%3B~TIGRFAM: seryl-tRNA synthetase~IMG reference gene:2505285473~PFAM: Seryl-tRNA synthetase N-terminal domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: seryl-tRNA synthetase gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2136 Thein_2137 Thein_2137 Thein_2137 2214043 2214975 + Na+/Ca+ antiporter%2C CaCA family COGs: COG0530 Ca2+/Na+ antiporter~InterPro IPR004837:IPR004481~KEGG: tra:Trad_2429 Na+/Ca+ antiporter%2C CaCA family~PFAM: sodium/calcium exchanger membrane region~SPTR: Na+/Ca+ antiporter%2C CaCA family%3B~TIGRFAM: Na+/Ca+ antiporter%2C CaCA family~IMG reference gene:2505285474~PFAM: Sodium/calcium exchanger protein~TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2137 Thein_2138 Thein_2138 Thein_2138 2214966 2215763 - prolipoprotein diacylglyceryl transferase COGs: COG0682 Prolipoprotein diacylglyceryltransferase~InterPro IPR001640~KEGG: dak:DaAHT2_1973 prolipoprotein diacylglyceryl transferase~PFAM: prolipoprotein diacylglyceryl transferase~SPTR: Prolipoprotein diacylglyceryl transferase%3B~TIGRFAM: prolipoprotein diacylglyceryl transferase~IMG reference gene:2505285475~PFAM: Prolipoprotein diacylglyceryl transferase~TIGRFAM: prolipoprotein diacylglyceryl transferase gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2138 Thein_2139 Thein_2139 Thein_2139 2215806 2218298 - Protein of unknown function DUF2344 COGs: COG1032 Fe-S oxidoreductase~InterPro IPR006638:IPR007197:IPR018768~KEGG: dak:DaAHT2_1161 protein of unknown function DUF2344~PFAM: Protein of unknown function DUF2344%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Fe-S oxidoreductase%3B~IMG reference gene:2505285476~PFAM: Uncharacterized protein conserved in bacteria (DUF2344)%3B Radical SAM superfamily~TIGRFAM: radical SAM family uncharacterized protein%3B radical SAM-linked protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2139 Thein_2140 Thein_2140 Thein_2140 2218485 2219366 - UTP-glucose-1-phosphate uridylyltransferase COGs: COG1210 UDP-glucose pyrophosphorylase~InterPro IPR005835:IPR005771~KEGG: dak:DaAHT2_0367 UTP-glucose-1-phosphate uridylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: UTP--glucose-1-phosphate uridylyltransferase~SPTR: UTP-glucose-1-phosphate uridylyltransferase%3B~TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase~IMG reference gene:2505285477~PFAM: Nucleotidyl transferase~TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2140 Thein_2141 Thein_2141 Thein_2141 2219625 2220227 - hypothetical protein KEGG: dol:Dole_3051 response regulator receiver protein~SPTR: Response regulator receiver protein%3B~IMG reference gene:2505285478 gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2141 Thein_2142 Thein_2142 Thein_2142 2220224 2221399 - twitching motility protein COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT~InterPro IPR001482:IPR006321~KEGG: dal:Dalk_3301 twitching motility protein~PFAM: type II secretion system protein E~SPTR: Twitching motility protein%3B~TIGRFAM: twitching motility protein~IMG reference gene:2505285479~PFAM: Type II/IV secretion system protein~TIGRFAM: pilus retraction protein PilT gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2142 Thein_2143 Thein_2143 Thein_2143 2221396 2222487 - twitching motility protein COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT~InterPro IPR003593:IPR001482:IPR006321~KEGG: dak:DaAHT2_1068 twitching motility protein~PFAM: type II secretion system protein E~SMART: AAA ATPase~SPTR: Twitching motility protein%3B~TIGRFAM: twitching motility protein~IMG reference gene:2505285480~PFAM: Type II/IV secretion system protein~TIGRFAM: pilus retraction protein PilT gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2143 Thein_2144 Thein_2144 Thein_2144 2222581 2223246 + cell division ATP-binding protein FtsE COGs: COG2884 ATPase involved in cell division~InterPro IPR003593:IPR003439:IPR017871:IPR005286~KEGG: ppd:Ppro_2412 cell division ATP-binding protein FtsE~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Cell division ATP-binding protein FtsE%3B~TIGRFAM: cell division ATP-binding protein FtsE~IMG reference gene:2505285481~PFAM: ABC transporter~TIGRFAM: cell division ATP-binding protein FtsE gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2144 Thein_2145 Thein_2145 Thein_2145 2223243 2224118 + protein of unknown function DUF214 COGs: COG2177 Cell division protein~InterPro IPR003838~KEGG: dak:DaAHT2_1197 protein of unknown function DUF214~PFAM: protein of unknown function DUF214~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285482~PFAM: Predicted permease gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2145 Thein_2146 Thein_2146 Thein_2146 2224070 2225272 + Peptidase M23 COGs: COG4942 Membrane-bound metallopeptidase~InterPro IPR016047~KEGG: glo:Glov_1921 peptidase M23~PFAM: Peptidase M23~SPTR: Peptidase M23%3B~IMG reference gene:2505285483~PFAM: Peptidase family M23 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2146 Thein_2147 Thein_2147 Thein_2147 2225280 2226638 + carboxyl-terminal protease COGs: COG0793 Periplasmic protease~InterPro IPR001478:IPR005151:IPR004447~KEGG: sfu:Sfum_3063 carboxyl-terminal protease~PFAM: peptidase S41%3B PDZ/DHR/GLGF domain protein~PRIAM: C-terminal processing peptidase~SMART: peptidase S41%3B PDZ/DHR/GLGF domain protein~SPTR: Carboxyl-terminal protease%3B~TIGRFAM: carboxyl-terminal protease~IMG reference gene:2505285484~PFAM: Peptidase family S41%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: C-terminal peptidase (prc) gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2147 Thein_2148 Thein_2148 Thein_2148 2226639 2227577 + protein of unknown function DUF610 YibQ COGs: COG2861 conserved hypothetical protein~InterPro IPR006837~KEGG: dol:Dole_2454 protein of unknown function DUF610 YibQ~PFAM: protein of unknown function DUF610 YibQ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285485~PFAM: Divergent polysaccharide deacetylase gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2148 Thein_2149 Thein_2149 Thein_2149 2227549 2228637 + histidinol-phosphate aminotransferase COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~InterPro IPR004839:IPR005861:IPR001917~KEGG: dak:DaAHT2_2672 histidinol-phosphate aminotransferase~PFAM: aminotransferase class I and II~SPTR: Histidinol-phosphate aminotransferase%3B~TIGRFAM: histidinol-phosphate aminotransferase~IMG reference gene:2505285486~PFAM: Aminotransferase class I and II~TIGRFAM: histidinol-phosphate aminotransferase gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2149 Thein_2150 Thein_2150 Thein_2150 2228627 2229316 + cytidylate kinase COGs: COG0283 Cytidylate kinase~InterPro IPR000623:IPR011994:IPR003136~KEGG: tte:TTE1350 cytidylate kinase~PFAM: cytidylate kinase region%3B shikimate kinase~SPTR: Cytidylate kinase%3B~TIGRFAM: cytidylate kinase~IMG reference gene:2505285487~PFAM: Cytidylate kinase%3B Adenylate kinase~TIGRFAM: cytidylate kinase gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2150 Thein_2151 Thein_2151 Thein_2151 2229303 2230259 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: aae:aq_1899 dolichol-phosphate mannosyltransferase~PFAM: glycosyl transferase family 2~SPTR: Dolichol-phosphate mannosyltransferase%3B~IMG reference gene:2505285488~PFAM: Glycosyl transferase family 2 gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2151 Thein_2152 Thein_2152 Thein_2152 2230256 2231161 + hypothetical protein InterPro IPR005242~KEGG: min:Minf_2171 hypothetical protein~SPTR: Uncharacterized conserved membrane protein%3B~IMG reference gene:2505285489~PFAM: Uncharacterised protein family (UPF0104)~TIGRFAM: conserved hypothetical protein gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2152 Thein_2153 Thein_2153 Thein_2153 2231490 2232395 + protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: dat:HRM2_13600 hypothetical protein~PFAM: protein of unknown function DUF6 transmembrane~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285490~PFAM: EamA-like transporter family gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2153 Thein_2154 Thein_2154 Thein_2154 2232407 2233357 + methionyl-tRNA formyltransferase COGs: COG0223 Methionyl-tRNA formyltransferase~InterPro IPR002376:IPR005793:IPR005794:IPR001555~KEGG: gme:Gmet_3339 methionyl-tRNA formyltransferase~PFAM: formyl transferase domain protein~SPTR: Methionyl-tRNA formyltransferase%3B~TIGRFAM: methionyl-tRNA formyltransferase~IMG reference gene:2505285491~PFAM: Formyl transferase%3B Formyl transferase%2C C-terminal domain~TIGRFAM: methionyl-tRNA formyltransferase gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2154 Thein_2155 Thein_2155 Thein_2155 2233825 2235171 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG1251 NAD(P)H-nitrite reductase~InterPro IPR013027:IPR000103:IPR004099~KEGG: adg:Adeg_1429 FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region~SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B~IMG reference gene:2505285492~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2155 Thein_2156 Thein_2156 Thein_2156 2235168 2237645 - excinuclease ABC%2C A subunit COGs: COG0178 Excinuclease ATPase subunit~InterPro IPR003439:IPR017871:IPR004602~KEGG: alv:Alvin_0546 excinuclease ABC%2C A subunit~PFAM: ABC transporter related~SPTR: Excinuclease ABC%2C A subunit%3B~TIGRFAM: excinuclease ABC%2C A subunit~IMG reference gene:2505285493~PFAM: ABC transporter~TIGRFAM: excinuclease ABC%2C A subunit gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2156 Thein_2157 Thein_2157 Thein_2157 2237709 2238482 - type I phosphodiesterase/nucleotide pyrophosphatase COGs: COG1524 Uncharacterized protein of the AP superfamily~InterPro IPR002591~KEGG: rca:Rcas_1244 type I phosphodiesterase/nucleotide pyrophosphatase~PFAM: type I phosphodiesterase/nucleotide pyrophosphatase~SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase%3B~IMG reference gene:2505285494~PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2157 Thein_2158 Thein_2158 Thein_2158 2238482 2239330 - binding-protein-dependent transport systems inner membrane component COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II~InterPro IPR000515~KEGG: ddf:DEFDS_1579 spermidine/putrescine ABC transporter permease~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: ABC-type spermidine/putrescine transport system%2C permease component II%3B~IMG reference gene:2505285495~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2158 Thein_2159 Thein_2159 Thein_2159 2239327 2240175 - binding-protein-dependent transport systems inner membrane component COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I~InterPro IPR000515~KEGG: ant:Arnit_1316 binding-protein-dependent transporter inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: ABC-type spermidine/putrescine transport system%2C permease component I%3B~IMG reference gene:2505285496~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2159 Thein_2160 Thein_2160 Thein_2160 2240156 2241190 - ABC transporter related protein COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003593:IPR003439:IPR013611:IPR017871~KEGG: ddf:DEFDS_1581 spermidine/putrescine ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B Transport-associated OB domain-containing protein~SMART: AAA ATPase~SPTR: Spermidine/putrescine ABC transporter%2C ATP-binding protein (PotA)%3B~IMG reference gene:2505285497~PFAM: ABC transporter%3B TOBE domain gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2160 Thein_2161 Thein_2161 Thein_2161 2241246 2242307 - extracellular solute-binding protein family 1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein~InterPro IPR001188:IPR006059~KEGG: ddf:DEFDS_1582 spermidine/putrescine ABC transporter substrate-binding protein~PFAM: extracellular solute-binding protein family 1~SPTR: Spermidine/putrescine-binding periplasmic protein%3B~IMG reference gene:2505285498~PFAM: Bacterial extracellular solute-binding protein gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2161 Thein_2162 Thein_2162 Thein_2162 2242743 2243504 + protein of unknown function DUF62 COGs: COG1912 conserved hypothetical protein~InterPro IPR002747~KEGG: pis:Pisl_0002 hypothetical protein~PFAM: protein of unknown function DUF62~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285499~PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2162 Thein_2163 Thein_2163 Thein_2163 2243488 2244216 + methyltransferase small COGs: COG4123 O-methyltransferase~InterPro IPR007848:IPR002052~KEGG: sat:SYN_01006 methyltransferase~PFAM: methyltransferase small~SPTR: Methyltransferase%3B~IMG reference gene:2505285500~PFAM: Methyltransferase small domain gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2163 Thein_2164 Thein_2164 Thein_2164 2244180 2244659 - protein of unknown function DUF721 InterPro IPR007922~KEGG: dps:DP0932 hypothetical protein~PFAM: protein of unknown function DUF721~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285501~PFAM: Protein of unknown function (DUF721) gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2164 Thein_2165 Thein_2165 Thein_2165 2244659 2246023 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterProIPR005841:IPR005844:IPR005845:IPR005846:IPR 005843:IPR016066~KEGG: afw:Anae109_0166 phosphomannomutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase~SPTR: Phosphomannomutase%3B~IMG reference gene:2505285502~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2165 Thein_2166 Thein_2166 Thein_2166 2246391 2247890 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089:IPR004090:IPR000727~KEGG: ami:Amir_1755 methyl-accepting chemotaxis sensory transducer~PFAM: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SMART: chemotaxis sensory transducer%3B histidine kinase HAMP region domain protein~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2505285503~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2166 Thein_2167 Thein_2167 Thein_2167 2248016 2248213 - hypothetical protein KEGG: dak:DaAHT2_0802 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285504 gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2167 Thein_2168 Thein_2168 Thein_2168 2248260 2249963 + single-stranded-DNA-specific exonuclease RecJ COGs: COG0608 Single-stranded DNA-specific exonuclease~InterPro IPR001667:IPR003156:IPR004610~KEGG: gsu:GSU2614 single-stranded-DNA-specific exonuclease RecJ~PFAM: phosphoesterase RecJ domain protein%3B phosphoesterase DHHA1~SPTR: Single-stranded-DNA-specific exonuclease RecJ%3B~TIGRFAM: single-stranded-DNA-specific exonuclease RecJ~IMG reference gene:2505285505~PFAM: DHH family%3B DHHA1 domain~TIGRFAM: single-stranded-DNA-specific exonuclease RecJ gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2168 Thein_2169 Thein_2169 Thein_2169 2250004 2250303 - histone family protein DNA-binding protein InterPro IPR000119~KEGG: dde:Dde_0517 histone-like DNA-binding protein~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein~SPTR: Histone-like DNA-binding protein%3B~IMG reference gene:2505285506~PFAM: Bacterial DNA-binding protein gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2169 Thein_2170 Thein_2170 Thein_2170 2250304 2251569 - enolase COGs: COG0148 Enolase~InterPro IPR000941:IPR020811:IPR020810:IPR020809~KEGG: tte:TTE1759 phosphopyruvate hydratase~PFAM: Enolase-like~PRIAM: Phosphopyruvate hydratase~SPTR: Enolase%3B~TIGRFAM: enolase~IMG reference gene:2505285507~PFAM: Enolase%2C N-terminal domain%3B Enolase%2C C-terminal TIM barrel domain~TIGRFAM: phosphopyruvate hydratase gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2170 Thein_2171 Thein_2171 Thein_2171 2251631 2252188 - isochorismatase hydrolase COGs: COG1335 Amidase related to nicotinamidase~InterPro IPR000868~KEGG: dak:DaAHT2_0562 isochorismatase hydrolase~PFAM: isochorismatase hydrolase~SPTR: Isochorismatase hydrolase%3B~IMG reference gene:2505285508~PFAM: Isochorismatase family gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2171 Thein_2172 Thein_2172 Thein_2172 2252279 2252809 - ATP-cone domain protein COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains~InterPro IPR005144:IPR003796~KEGG: gem:GM21_1225 transcriptional regulator NrdR~PFAM: ATP-cone domain protein~SPTR: Transcriptional repressor nrdR%3B~IMG reference gene:2505285509~PFAM: ATP cone domain~TIGRFAM: transcriptional regulator NrdR gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2172 Thein_2173 Thein_2173 Thein_2173 2252915 2253118 + Rubredoxin-type Fe(Cys)4 protein COGs: COG1773 Rubredoxin~InterPro IPR001052:IPR004039:IPR018527~KEGG: dak:DaAHT2_1019 rubredoxin-type Fe(Cys)4 protein~PFAM: Rubredoxin-type Fe(Cys)4 protein~SPTR: Rubredoxin%3B~IMG reference gene:2505285510~PFAM: Rubredoxin gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2173 Thein_2174 Thein_2174 Thein_2174 2253128 2253445 + hypothetical protein KEGG: dak:DaAHT2_2128 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285511 gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2174 Thein_2175 Thein_2175 Thein_2175 2253538 2254506 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein~PFAM: transposase IS116/IS110/IS902 family protein~SPTR: Transposase and inactivated derivative%3B~IMG reference gene:2505285512~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2175 Thein_2176 Thein_2176 Thein_2176 2254503 2254685 - hypothetical protein IMG reference gene:2505285513 gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2176 Thein_2177 Thein_2177 Thein_2177 2255106 2259194 - formate dehydrogenase%2C alpha subunit COGs: COG3383 Uncharacterized anaerobic dehydrogenase~InterProIPR000759:IPR001041:IPR013027:IPR006963:IPR 006656:IPR006657:IPR018247:IPR017900:IPR006655:IPR017896:I PR006478~KEGG: dak:DaAHT2_0823 formate dehydrogenase%2C alpha subunit~PFAM: molybdopterin oxidoreductase%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B ferredoxin%3B molybdopterin oxidoreductase Fe4S4 region%3B molydopterin dinucleotide-binding region~SPTR: Formate dehydrogenase%2C alpha subunit%3B~TIGRFAM: formate dehydrogenase%2C alpha subunit~manually curated~selenocysteine-containing protein~IMG reference gene:2505285514~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain%3B 4Fe-4S binding domain%3B Molybdopterin oxidoreductase Fe4S4 domain~TIGRFAM: formate dehydrogenase%2C alpha subunit%2C archaeal-type gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2177 Thein_2178 Thein_2178 Thein_2178 2259229 2260860 - phosphate ABC transporter%2C periplasmic phosphate-binding protein COGs: COG0226 ABC-type phosphate transport system periplasmic component~InterPro IPR003704:IPR005673~KEGG: dge:Dgeo_0649 periplasmic phosphate binding protein~PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit~SPTR: ABC-type phosphate transport system%2C periplasmic component%2C PstS%3B~TIGRFAM: phosphate ABC transporter%2C periplasmic phosphate-binding protein~IMG reference gene:2505285515~PFAM: Bacterial extracellular solute-binding protein%3B CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit~TIGRFAM: phosphate ABC transporter%2C phosphate-binding protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2178 Thein_2179 Thein_2179 Thein_2179 2261064 2261960 - dihydropteroate synthase DHPS COGs: COG1410 Methionine synthase I cobalamin-binding domain~InterPro IPR000489~KEGG: dak:DaAHT2_1991 dihydropteroate synthase DhpS~PFAM: dihydropteroate synthase DHPS~SPTR: Dihydropteroate synthase DHPS%3B~IMG reference gene:2505285516~PFAM: Pterin binding enzyme gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2179 Thein_2180 Thein_2180 Thein_2180 2262036 2262380 - Nucleotidyltransferase substrate binding protein HI0074 InterPro IPR010235~KEGG: slp:Slip_1892 nucleotidyltransferase substrate binding protein%2C HI0074 family~PFAM: Nucleotidyltransferase substrate binding protein HI0074~SPTR: Nucleotidyltransferase substrate binding protein%2C HI0074 family%3B~IMG reference gene:2505285517~PFAM: Nucleotidyltransferase substrate binding protein like~TIGRFAM: nucleotidyltransferase substrate binding protein%2C HI0074 family gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2180 Thein_2181 Thein_2181 Thein_2181 2262371 2262664 - DNA polymerase beta domain protein region InterPro IPR002934~KEGG: aae:aq_507 hypothetical protein~PFAM: DNA polymerase beta domain protein region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285518~PFAM: Nucleotidyltransferase domain gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2181 Thein_2182 Thein_2182 Thein_2182 2262669 2264021 - CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel COGs: COG1456 CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein)~InterPro IPR007202:IPR016041:IPR016218~KEGG: dak:DaAHT2_0824 CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel~PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel%3B Fe-S cluster domain protein~SPTR: CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel%3B~IMG reference gene:2505285519~PFAM: Putative Fe-S cluster%3B CO dehydrogenase/acetyl-CoA synthase delta subunit gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2182 Thein_2183 Thein_2183 Thein_2183 2264054 2266276 - CO dehydrogenase/acetyl-CoA synthase complex%2C beta subunit COGs: COG1614 CO dehydrogenase/acetyl-CoA synthase beta subunit~InterPro IPR004461~KEGG: dak:DaAHT2_0825 CO dehydrogenase/acetyl-CoA synthase complex%2C beta subunit~PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit~PRIAM: CO-methylating acetyl-CoA synthase~SPTR: CO dehydrogenase/acetyl-CoA synthase complex%2C beta subunit%3B~TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex%2C beta subunit~IMG reference gene:2505285520~PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit~TIGRFAM: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex%2C beta subunit gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2183 Thein_2184 Thein_2184 Thein_2184 2266297 2268975 - CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel COGs: COG2069 CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein)~InterPro IPR019734:IPR003171:IPR016041:IPR013026~KEGG: dak:DaAHT2_0826 CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel~PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel%3B methylenetetrahydrofolate reductase~SPTR: CO dehydrogenase/acetyl-CoA synthase delta subunit%2C TIM barrel%3B~IMG reference gene:2505285521~PFAM: Methylenetetrahydrofolate reductase%3B CO dehydrogenase/acetyl-CoA synthase delta subunit~TIGRFAM: CO dehydrogenase/acetyl-CoA synthase%2C delta subunit gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2184 Thein_2185 Thein_2185 Thein_2185 2268992 2269669 - hypothetical protein KEGG: pth:PTH_1005 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285522~PFAM: Methylene-tetrahydrofolate reductase C terminal gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2185 Thein_2186 Thein_2186 Thein_2186 2269669 2270052 - methyl-viologen-reducing hydrogenase delta subunit COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit~InterPro IPR003813~KEGG: adg:Adeg_0343 methyl-viologen-reducing hydrogenase delta subunit~PFAM: methyl-viologen-reducing hydrogenase delta subunit~SPTR: Methyl-viologen-reducing hydrogenase delta subunit%3B~IMG reference gene:2505285523~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2186 Thein_2187 Thein_2187 Thein_2187 2270045 2270614 - 4Fe-4S ferredoxin iron-sulfur binding domain protein COGs: COG1150 Heterodisulfide reductase subunit C~InterPro IPR017900:IPR017896~KEGG: dak:DaAHT2_1634 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding%3B~IMG reference gene:2505285524 gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2187 Thein_2188 Thein_2188 Thein_2188 2270621 2271373 - methyl-viologen-reducing hydrogenase delta subunit COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit~InterPro IPR003813~KEGG: dak:DaAHT2_0821 methyl-viologen-reducing hydrogenase delta subunit~PFAM: methyl-viologen-reducing hydrogenase delta subunit~SPTR: Methyl-viologen-reducing hydrogenase delta subunit%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505285525~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2188 Thein_2189 Thein_2189 Thein_2189 2271400 2274465 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterProIPR013027:IPR006076:IPR003953:IPR017900:IPR 017896~KEGG: dak:DaAHT2_2650 fumarate reductase/succinate dehydrogenase flavoprotein domain protein~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD dependent oxidoreductase~SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B~manually curated~selenocysteine-containing protein~IMG reference gene:2505285526~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2189 Thein_2190 Thein_2190 Thein_2190 2274482 2276506 - carbon-monoxide dehydrogenase%2C catalytic subunit COGs: COG1151 6Fe-6S prismane cluster-containing protein~InterPro IPR004137:IPR010047~KEGG: adg:Adeg_0335 carbon-monoxide dehydrogenase%2C catalytic subunit~PFAM: Prismane~PRIAM: Carbon-monoxide dehydrogenase (acceptor)~SPTR: Carbon-monoxide dehydrogenase%2C catalytic subunit%3B~TIGRFAM: carbon-monoxide dehydrogenase%2C catalytic subunit~IMG reference gene:2505285527~PFAM: Prismane/CO dehydrogenase family~TIGRFAM: carbon-monoxide dehydrogenase%2C catalytic subunit gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2190 Thein_2191 Thein_2191 Thein_2191 2276576 2277478 - Methenyltetrahydrofolate cyclohydrolase COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase~InterPro IPR000672:IPR020630:IPR020631:IPR020867~KEGG: dak:DaAHT2_0828 methylenetetrahydrofolate dehydrogenase (NADP(+))~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain~PRIAM: Methenyltetrahydrofolate cyclohydrolase~SPTR: Methylenetetrahydrofolate dehydrogenase (NADP(+))%3B~IMG reference gene:2505285528~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2191 Thein_2192 Thein_2192 Thein_2192 2277658 2279421 - Formate--tetrahydrofolate ligase COGs: COG2759 Formyltetrahydrofolate synthetase~InterPro IPR000559:IPR020628~KEGG: dak:DaAHT2_0837 formate--tetrahydrofolate ligase~PFAM: formate-tetrahydrofolate ligase FTHFS~PRIAM: Formate--tetrahydrofolate ligase~SPTR: Formate--tetrahydrofolate ligase%3B~IMG reference gene:2505285529~PFAM: Formate--tetrahydrofolate ligase gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2192 Thein_2193 Thein_2193 Thein_2193 2279843 2280169 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: sal:Sala_2190 XRE family transcriptional regulator~PFAM: type IV pilus assembly PilZ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285530 gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2193 Thein_2194 Thein_2194 Thein_2194 2280539 2281321 + chain A%2C iron Centre cytochrome c protein InterPro IPR017909:IPR006311~KEGG: dak:DaAHT2_0012 chain A%2C iron Centre cytochrome c protein~SPTR: Chain A%2C iron Centre cytochrome c protein%3B~IMG reference gene:2505285531 gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2194 Thein_2195 Thein_2195 Thein_2195 2281371 2282012 - Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: sul:SYO3AOP1_1193 methyltransferase type 11~PFAM: Methyltransferase type 11~SPTR: Methyltransferase type 11%3B~IMG reference gene:2505285532~PFAM: Methyltransferase domain gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2195 Thein_2196 Thein_2196 Thein_2196 2282066 2283478 - glutamine synthetase%2C type I COGs: COG0174 Glutamine synthetase~InterPro IPR008147:IPR008146:IPR004809~KEGG: dal:Dalk_5100 glutamine synthetase%2C type I~PFAM: glutamine synthetase catalytic region%3B glutamine synthetase beta-Grasp~SPTR: Glutamine synthetase%3B~TIGRFAM: glutamine synthetase%2C type I~IMG reference gene:2505285533~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp domain~TIGRFAM: glutamine synthetase%2C type I gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2196 Thein_2197 Thein_2197 Thein_2197 2283517 2285985 - UTP-GlnB uridylyltransferase%2C GlnD COGs: COG2844 UTP:GlnB (protein PII) uridylyltransferase~InterProIPR003607:IPR002934:IPR013546:IPR006674:IPR 002912:IPR010043~KEGG: dps:DP0929 [protein-PII] uridylyltransferase~PFAM: GlnD PII-uridylyltransferase%3B DNA polymerase beta domain protein region%3B metal-dependent phosphohydrolase HD sub domain%3B amino acid-binding ACT domain protein~PRIAM: [Protein-PII] uridylyltransferase~SMART: metal-dependent phosphohydrolase HD region~SPTR: Probable [Protein-PII] uridylyltransferase%3B~TIGRFAM: protein-P-II uridylyltransferase~IMG reference gene:2505285534~PFAM: GlnD PII-uridylyltransferase%3B HD domain%3B Nucleotidyltransferase domain~TIGRFAM: [Protein-PII] uridylyltransferase gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2197 Thein_2198 Thein_2198 Thein_2198 2285986 2286324 - nitrogen regulatory protein P-II COGs: COG0347 Nitrogen regulatory protein PII~InterPro IPR002187:IPR002332:IPR017918~KEGG: pmx:PERMA_1585 nitrogen regulatory protein P-II~PFAM: nitrogen regulatory protein P-II~SPTR: Nitrogen regulatory protein P-II%3B~IMG reference gene:2505285535~PFAM: Nitrogen regulatory protein P-II gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2198 Thein_2199 Thein_2199 Thein_2199 2286502 2286888 - protein of unknown function UPF0153 InterPro IPR005358~KEGG: dak:DaAHT2_0703 protein of unknown function UPF0153~PFAM: protein of unknown function UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285536~PFAM: Uncharacterised protein family (UPF0153) gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2199 Thein_2200 Thein_2200 Thein_2200 2286869 2287549 - exsB protein COGs: COG0603 PP-loop superfamily ATPase~InterPro IPR018317:IPR004479~KEGG: ddf:DEFDS_0939 ExsB family transcriptional regulator~PFAM: Queuosine synthesis-like~SPTR: Transcriptional regulator%2C ExsB family%3B~TIGRFAM: exsB protein~IMG reference gene:2505285537~PFAM: ExsB~TIGRFAM: queuosine biosynthesis protein QueC gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2200 Thein_2201 Thein_2201 Thein_2201 2287549 2288805 - adenosylhomocysteinase COGs: COG0499 S-adenosylhomocysteine hydrolase~InterPro IPR000043:IPR015878:IPR020082~KEGG: tye:THEYE_A0111 S-adenosyl-L-homocysteine hydrolase~PFAM: S-adenosyl-L-homocysteine hydrolase%2C NAD binding%3B S-adenosyl-L-homocysteine hydrolase~PRIAM: Adenosylhomocysteinase~SPTR: Adenosylhomocysteinase%3B~TIGRFAM: adenosylhomocysteinase~IMG reference gene:2505285538~PFAM: S-adenosyl-L-homocysteine hydrolase%2C NAD binding domain%3B S-adenosyl-L-homocysteine hydrolase~TIGRFAM: adenosylhomocysteinase gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2201 Thein_2202 Thein_2202 Thein_2202 2288818 2289975 - S-adenosylmethionine synthetase COGs: COG0192 S-adenosylmethionine synthetase~InterPro IPR002133~KEGG: sfu:Sfum_0367 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase~PRIAM: Methionine adenosyltransferase~SPTR: S-adenosylmethionine synthase%3B~TIGRFAM: S-adenosylmethionine synthetase~IMG reference gene:2505285539~PFAM: S-adenosylmethionine synthetase%2C C-terminal domain%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal domain~TIGRFAM: S-adenosylmethionine synthetase gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2202 Thein_2203 Thein_2203 Thein_2203 2289991 2290878 - hypothetical protein COGs: COG2248 hydrolase (metallo-beta-lactamase superfamily)~InterPro IPR014426~KEGG: afu:AF0504 hypothetical protein~SPTR: UPF0282 protein AF_0504%3B~IMG reference gene:2505285540~PFAM: Metallo-beta-lactamase superfamily gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2203 Thein_2204 Thein_2204 Thein_2204 2291736 2292683 + hypothetical protein KEGG: sfu:Sfum_1584 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285543 gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2204 Thein_2205 Thein_2205 Thein_2205 2292784 2293800 + metalloendopeptidase%2C glycoprotease family COGs: COG0533 Metal-dependent protease with possible chaperone activity~InterPro IPR017861:IPR000905~KEGG: hor:Hore_01980 putative metalloendopeptidase%2C glycoprotease family~PFAM: peptidase M22 glycoprotease~PRIAM: O-sialoglycoprotein endopeptidase~SPTR: Probable O-sialoglycoprotein endopeptidase%3B~TIGRFAM: metalloendopeptidase%2C glycoprotease family~IMG reference gene:2505285544~PFAM: Glycoprotease family~TIGRFAM: putative glycoprotease GCP%3B metallohydrolase%2C glycoprotease/Kae1 family gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2205 Thein_2206 Thein_2206 Thein_2206 2293766 2294626 + dimethyladenosine transferase COGs: COG0030 Dimethyladenosine transferase (rRNA methylation)~InterPro IPR020598:IPR001737:IPR011530:IPR020596~KEGG: dak:DaAHT2_0616 dimethyladenosine transferase~PFAM: ribosomal RNA adenine methylase transferase~SMART: Ribosomal RNA adenine methylase transferase-like~SPTR: Dimethyladenosine transferase%3B~TIGRFAM: dimethyladenosine transferase~IMG reference gene:2505285545~PFAM: Ribosomal RNA adenine dimethylase~TIGRFAM: dimethyladenosine transferase gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2206 Thein_2207 Thein_2207 Thein_2207 2294613 2295323 - glutamine amidotransferase class-I COGs: COG0518 GMP synthase - Glutamine amidotransferase domain~InterPro IPR000991:IPR017926~KEGG: pmx:PERMA_0892 glutamine amidotransferase class-I~PFAM: glutamine amidotransferase class-I~SPTR: Glutamine amidotransferase class-I%3B~IMG reference gene:2505285546~PFAM: Glutamine amidotransferase class-I gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2207 Thein_2208 Thein_2208 Thein_2208 2295332 2296477 - DAHP synthetase I/KDSA COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR006218~KEGG: aeh:Mlg_1445 DAHP synthetase I/KdsA~PFAM: DAHP synthetase I/KDSA~SPTR: DAHP synthetase I/KDSA%3B~IMG reference gene:2505285547~PFAM: DAHP synthetase I family~TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2208 Thein_2209 Thein_2209 Thein_2209 2296548 2297189 + multiple antibiotic resistance (MarC)-related protein COGs: COG2095 Multiple antibiotic transporter~InterPro IPR002771~KEGG: svo:SVI_1135 MarC family integral membrane protein~PFAM: multiple antibiotic resistance (MarC)-related protein~SPTR: MarC family integral membrane protein%3B~IMG reference gene:2505285548~PFAM: MarC family integral membrane protein~TIGRFAM: membrane protein%2C MarC family gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2209 Thein_2210 Thein_2210 Thein_2210 2297159 2297827 - UBA/THIF-type NAD/FAD binding protein COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2~InterPro IPR000594:IPR007901~KEGG: pmo:Pmob_0383 UBA/ThiF-type NAD/FAD binding protein~PFAM: UBA/THIF-type NAD/FAD binding protein%3B MoeZ/MoeB domain protein~SPTR: UBA/THIF-type NAD/FAD binding protein%3B~IMG reference gene:2505285549~PFAM: MoeZ/MoeB domain%3B ThiF family gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2210 Thein_2211 Thein_2211 Thein_2211 2297824 2298117 - MoaD family protein InterPro IPR003749:IPR010038~KEGG: pmo:Pmob_0384 MoaD family protein~PFAM: thiamineS protein~SPTR: MoaD family protein%3B~TIGRFAM: MoaD family protein~IMG reference gene:2505285550~PFAM: ThiS family~TIGRFAM: MoaD family protein%2C archaeal gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2211 Thein_2212 Thein_2212 Thein_2212 2298187 2299374 + aminotransferase class I and II COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR001176:IPR004839:IPR004838~KEGG: dak:DaAHT2_0099 aminotransferase class I and II~PFAM: aminotransferase class I and II~SPTR: Aminotransferase class I and II%3B~IMG reference gene:2505285551~PFAM: Aminotransferase class I and II gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2212 Thein_2213 Thein_2213 Thein_2213 2299383 2300648 + Phenylacetate--CoA ligase COGs: COG1541 Coenzyme F390 synthetase~InterPro IPR000873~KEGG: tye:THEYE_A0024 phenylacetate-coenzyme A ligase~PFAM: AMP-dependent synthetase and ligase~PRIAM: Phenylacetate--CoA ligase~SPTR: Phenylacetate-coenzyme A ligase%3B~IMG reference gene:2505285552~PFAM: AMP-binding enzyme gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2213 Thein_2214 Thein_2214 Thein_2214 2300669 2301610 + dihydrouridine synthase DuS COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR001269:IPR018517~KEGG: aae:aq_1598 hypothetical protein~PFAM: dihydrouridine synthase DuS~SPTR: Probable tRNA-dihydrouridine synthase%3B~IMG reference gene:2505285553~PFAM: Dihydrouridine synthase (Dus) gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2214 Thein_2215 Thein_2215 Thein_2215 2301619 2302782 + putative signal transduction protein COGs: COG1639 signal transduction protein~InterPro IPR013976~KEGG: slt:Slit_2006 serine/threonine protein kinase~PFAM: Metal-dependent hydrolase HDOD~SPTR: Serine/threonine protein kinase%3B~IMG reference gene:2505285554~PFAM: HDOD domain gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2215 Thein_2216 Thein_2216 Thein_2216 2303218 2303946 + metallophosphoesterase COGs: COG1409 phosphohydrolase~InterPro IPR004843~KEGG: aae:aq_684 hypothetical protein~PFAM: metallophosphoesterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285555~PFAM: Calcineurin-like phosphoesterase gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2216 Thein_2217 Thein_2217 Thein_2217 2304025 2305380 - hydroxylamine oxidase InterPro IPR011031~KEGG: ant:Arnit_1867 hydroxylamine oxidase~SPTR: Hydroxylamine oxidase%3B~IMG reference gene:2505285556 gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2217 Thein_2218 Thein_2218 Thein_2218 2305398 2305958 - NapC/NirT cytochrome c domain protein COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit~InterPro IPR005126:IPR011031~KEGG: pmx:PERMA_1457 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha~PFAM: NapC/NirT cytochrome c domain protein~SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha%3B~IMG reference gene:2505285557~PFAM: NapC/NirT cytochrome c family%2C N-terminal region~TIGRFAM: cytochrome c nitrate reductase%2C small subunit gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2218 Thein_2219 Thein_2219 Thein_2219 2306097 2307617 + integral membrane sensor signal transduction histidine kinase COGs: COG2205 Osmosensitive K+ channel histidine kinase~InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467:IPR009056~KEGG: dba:Dbac_2092 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SPTR: Histidine kinase%3B~IMG reference gene:2505285558~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B Protein of unknown function (DUF3365) gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2219 Thein_2220 Thein_2220 Thein_2220 2307618 2308313 + two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: dba:Dbac_2095 two component transcriptional regulator%2C winged helix family~PFAM: response regulator receiver%3B transcriptional regulator domain-containing protein~SMART: response regulator receiver~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2505285559~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2220 Thein_2221 Thein_2221 Thein_2221 2308294 2309097 - periplasmic nitrate reductase NapH COGs: COG0348 Polyferredoxin~InterPro IPR017900:IPR000463:IPR017896~KEGG: ddf:DEFDS_1823 periplasmic nitrate reductase NapH~SPTR: Periplasmic nitrate reductase NapH%3B~IMG reference gene:2505285560~TIGRFAM: ferredoxin-type protein%2C NapH/MauN family gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2221 Thein_2222 Thein_2222 Thein_2222 2309101 2309673 - hypothetical protein InterPro IPR017900:IPR017896~KEGG: dap:Dacet_0088 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~manually curated~IMG reference gene:2505285561~TIGRFAM: ferredoxin-type protein NapF%3B MauM/NapG family ferredoxin-type protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2222 Thein_2223 Thein_2223 Thein_2223 2309654 2309953 - NapD family protein InterPro IPR005623~KEGG: ctt:CtCNB1_2019 NapD family protein~PFAM: NapD family protein~SPTR: Periplasmic nitrate reductase NapD%3B~IMG reference gene:2505285562~PFAM: NapD protein gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2223 Thein_2224 Thein_2224 Thein_2224 2310002 2312404 - molybdopterin oxidoreductase COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing~InterProIPR006963:IPR006656:IPR006657:IPR017909:IPR 006311~KEGG: ddf:DEFDS_1820 periplasmic nitrate reductase NapA~PFAM: molybdopterin oxidoreductase%3B molybdopterin oxidoreductase Fe4S4 region%3B molydopterin dinucleotide-binding region~SPTR: Periplasmic nitrate reductase NapA%3B~IMG reference gene:2505285563~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain%3B Molybdopterin oxidoreductase Fe4S4 domain~TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2224 Thein_2225 Thein_2225 Thein_2225 2312424 2312810 - multiheme C-type cytochrome InterPro IPR011031~KEGG: ddf:DEFDS_1819 multiheme C-type cytochrome~SPTR: Multiheme c-type cytochrome%3B~IMG reference gene:2505285564~PFAM: Class III cytochrome C family gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2225 Thein_2226 Thein_2226 Thein_2226 2313330 2315474 + ferrous iron transport protein B COGs: COG0370 Fe2+ transport system protein B~InterProIPR006073:IPR002917:IPR011619:IPR011642:IPR 011640:IPR005225:IPR003373~KEGG: pph:Ppha_2843 ferrous iron transport protein B~PFAM: Ferrous iron transport protein B domain-containing protein%3B GTP-binding protein HSR1-related%3B nucleoside recognition domain protein%3B Ferrous iron transport B domain-containing protein~SPTR: Ferrous iron transport protein B%3B~TIGRFAM: ferrous iron transport protein B%3B small GTP-binding protein~IMG reference gene:2505285565~PFAM: Ferrous iron transport protein B%3B Ferrous iron transport protein B C terminus%3B Nucleoside recognition~TIGRFAM: ferrous iron transporter FeoB%3B small GTP-binding protein domain gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2226 Thein_2227 Thein_2227 Thein_2227 2315483 2316322 + transporter gate domain protein KEGG: nam:NAMH_1746 transporter gate domain protein~SPTR: Transporter gate domain protein%3B~IMG reference gene:2505285566~PFAM: Nucleoside recognition gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2227 Thein_2228 Thein_2228 Thein_2228 2316481 2317515 - protein of unknown function DUF43 COGs: COG1568 methyltransferase~InterPro IPR002723~KEGG: apo:Arcpr_0370 protein of unknown function DUF43~PFAM: protein of unknown function DUF43~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285567~PFAM: Protein of unknown function DUF43 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2228 Thein_2229 Thein_2229 Thein_2229 2317627 2318046 + transcriptional regulator NikR%2C CopG family COGs: COG0864 transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain~InterPro IPR014864~KEGG: tpd:Teth39_2019 nickel responsive regulator~PFAM: NikR nickel binding~SPTR: Similar to nickel response regulator%3B~IMG reference gene:2505285568~PFAM: Ribbon-helix-helix protein%2C copG family%3B NikR C terminal nickel binding domain~TIGRFAM: nickel-responsive transcriptional regulator NikR gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2229 Thein_2230 Thein_2230 Thein_2230 2318077 2318583 - hypothetical protein KEGG: nam:NAMH_1390 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2505285569 gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2230 Thein_2231 Thein_2231 Thein_2231 2318594 2320024 - Curli production assembly/transport component CsgG COGs: COG1462 Uncharacterized protein involved in formation of curli polymers~InterPro IPR005534~KEGG: nam:NAMH_1389 putative curli production assembly/transport component CsgG subfamily~PFAM: Curli production assembly/transport component CsgG~SPTR: Putative curli production assembly/transport component CsgG subfamily%3B~IMG reference gene:2505285570~PFAM: Curli production assembly/transport component CsgG gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2231 Thein_2232 Thein_2232 Thein_2232 2320031 2320348 - CutA1 divalent ion tolerance protein COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations~InterPro IPR004323~KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein~PFAM: CutA1 divalent ion tolerance protein~SPTR: CutA1 divalent ion tolerance protein%3B~IMG reference gene:2505285571~PFAM: CutA1 divalent ion tolerance protein gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2232 Thein_2233 Thein_2233 Thein_2233 2320570 2321822 + hypothetical protein KEGG: dat:HRM2_46600 transposase for insertion sequences IS116%2C IS110 and IS902 (IS111A/IS1328/IS1533 family protein)~SPTR: Transposase%3B~manually curated~IMG reference gene:2505285572~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_2233 Thein_R0001 Thein_R0001 Thein_R0001 36384 36460 - tRNA-Met IMG reference gene:2505283315 tRNA gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0001 Thein_R0002 Thein_R0002 Thein_R0002 120288 120375 + tRNA-Leu IMG reference gene:2505283403 tRNA gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0002 Thein_R0003 Thein_R0003 Thein_R0003 217908 217983 - tRNA-Gly IMG reference gene:2505283498 tRNA gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0003 Thein_R0004 Thein_R0004 Thein_R0004 281272 281348 + tRNA-Pro IMG reference gene:2505283552 tRNA gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0004 Thein_R0005 Thein_R0005 Thein_R0005 298758 298834 - tRNA-Trp IMG reference gene:2505283565 tRNA gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0005 Thein_R0006 Thein_R0006 Thein_R0006 300283 300358 - tRNA-Thr IMG reference gene:2505283568 tRNA gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0006 Thein_R0007 Thein_R0007 Thein_R0007 300370 300445 - tRNA-Gly IMG reference gene:2505283569 tRNA gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0007 Thein_R0008 Thein_R0008 Thein_R0008 300462 300546 - tRNA-Tyr IMG reference gene:2505283570 tRNA gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0008 Thein_R0009 Thein_R0009 Thein_R0009 529167 529283 - 5S ribosomal RNA IMG reference gene:2505283794 rRNA gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0009 Thein_R0010 Thein_R0010 Thein_R0010 529832 532854 - 23S ribosomal RNA IMG reference gene:2505283797 rRNA gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0010 Thein_R0011 Thein_R0011 Thein_R0011 533030 533105 - tRNA-Ala IMG reference gene:2505283798 tRNA gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0011 Thein_R0012 Thein_R0012 Thein_R0012 533117 533195 - tRNA-Ile IMG reference gene:2505283799 tRNA gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0012 Thein_R0013 Thein_R0013 Thein_R0013 533396 534957 - 16S ribosomal RNA IMG reference gene:2505283800 rRNA gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0013 Thein_R0014 Thein_R0014 Thein_R0014 611649 611724 - tRNA-Ala IMG reference gene:2505283873 tRNA gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0014 Thein_R0015 Thein_R0015 Thein_R0015 698199 698275 - tRNA-Pro IMG reference gene:2505283956 tRNA gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0015 Thein_R0016 Thein_R0016 Thein_R0016 734709 734784 - tRNA-Glu IMG reference gene:2505283990 tRNA gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0016 Thein_R0017 Thein_R0017 Thein_R0017 860580 860696 - 5S ribosomal RNA IMG reference gene:2505284125 rRNA gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0017 Thein_R0018 Thein_R0018 Thein_R0018 860827 863849 - 23S ribosomal RNA IMG reference gene:2505284126 rRNA gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0018 Thein_R0019 Thein_R0019 Thein_R0019 864025 864100 - tRNA-Ala IMG reference gene:2505284127 tRNA gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0019 Thein_R0020 Thein_R0020 Thein_R0020 864112 864190 - tRNA-Ile IMG reference gene:2505284128 tRNA gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0020 Thein_R0021 Thein_R0021 Thein_R0021 864391 865952 - 16S ribosomal RNA IMG reference gene:2505284129 rRNA gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0021 Thein_R0022 Thein_R0022 Thein_R0022 906547 906621 + tRNA-Val IMG reference gene:2505284168 tRNA gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0022 Thein_R0023 Thein_R0023 Thein_R0023 906635 906712 + tRNA-Asp IMG reference gene:2505284169 tRNA gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0023 Thein_R0024 Thein_R0024 Thein_R0024 941072 941147 - tRNA-Cys IMG reference gene:2505284201 tRNA gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0024 Thein_R0025 Thein_R0025 Thein_R0025 941156 941232 - tRNA-Met IMG reference gene:2505284202 tRNA gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0025 Thein_R0026 Thein_R0026 Thein_R0026 980295 980371 + tRNA-Lys IMG reference gene:2505284234 tRNA gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0026 Thein_R0027 Thein_R0027 Thein_R0027 1005682 1005758 - tRNA-Arg IMG reference gene:2505284261 tRNA gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0027 Thein_R0028 Thein_R0028 Thein_R0028 1021734 1021810 - tRNA-Arg IMG reference gene:2505284280 tRNA gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0028 Thein_R0029 Thein_R0029 Thein_R0029 1058131 1058207 - tRNA-Arg IMG reference gene:2505284315 tRNA gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0029 Thein_R0030 Thein_R0030 Thein_R0030 1146430 1146885 + SsrA-binding protein COGs: COG0691 tmRNA-binding protein~InterPro IPR020081:IPR000037~KEGG: ate:Athe_0463 SsrA-binding protein~PFAM: SmpB protein~SPTR: SsrA-binding protein%3B~TIGRFAM: SsrA-binding protein~tmRNA as predicted by Rfam (RF00023)%2C score 220.13~IMG reference gene:2505284397~PFAM: SmpB protein~TIGRFAM: SsrA-binding protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0030 Thein_R0031 Thein_R0031 Thein_R0031 1184053 1184128 + tRNA-Asn IMG reference gene:2505284425 tRNA gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0031 Thein_R0032 Thein_R0032 Thein_R0032 1253755 1253831 - tRNA-Pro IMG reference gene:2505284497 tRNA gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0032 Thein_R0033 Thein_R0033 Thein_R0033 1276011 1276087 + tRNA-Met IMG reference gene:2505284522 tRNA gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0033 Thein_R0034 Thein_R0034 Thein_R0034 1329035 1329217 + 6S RNA 6S / SsrS RNA as predicted by Rfam (RF00013)%2C score 81.85~IMG reference gene:2505284580 ncRNA gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0034 Thein_R0035 Thein_R0035 Thein_R0035 1440189 1440263 + tRNA-Gln IMG reference gene:2505284685 tRNA gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0035 Thein_R0036 Thein_R0036 Thein_R0036 1492772 1492847 + tRNA-Gly IMG reference gene:2505284737 tRNA gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0036 Thein_R0037 Thein_R0037 Thein_R0037 1495653 1495739 - tRNA-Leu IMG reference gene:2505284740 tRNA gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0037 Thein_R0038 Thein_R0038 Thein_R0038 1501434 1501509 + tRNA-Phe IMG reference gene:2505284746 tRNA gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0038 Thein_R0039 Thein_R0039 Thein_R0039 1572547 1572623 - tRNA-Arg IMG reference gene:2505284830 tRNA gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0039 Thein_R0040 Thein_R0040 Thein_R0040 1643216 1643292 - tRNA-His IMG reference gene:2505284899 tRNA gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0040 Thein_R0041 Thein_R0041 Thein_R0041 1643356 1643430 - tRNA-Gln IMG reference gene:2505284900 tRNA gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0041 Thein_R0042 Thein_R0042 Thein_R0042 1652621 1652695 + tRNA-Val IMG reference gene:2505284911 tRNA gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0042 Thein_R0043 Thein_R0043 Thein_R0043 1754101 1754175 - tRNA-Val IMG reference gene:2505285013 tRNA gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0043 Thein_R0044 Thein_R0044 Thein_R0044 1766565 1766655 + tRNA-Ser IMG reference gene:2505285029 tRNA gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0044 Thein_R0045 Thein_R0045 Thein_R0045 1766739 1766831 + tRNA-Ser IMG reference gene:2505285030 tRNA gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0045 Thein_R0046 Thein_R0046 Thein_R0046 1831004 1831076 - tRNA-Thr IMG reference gene:2505285089 tRNA gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0046 Thein_R0047 Thein_R0047 Thein_R0047 1923616 1924003 - RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam (RF00010)%2C score 256.02~IMG reference gene:2505285177 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0047 Thein_R0048 Thein_R0048 Thein_R0048 1928916 1928992 + tRNA-Arg IMG reference gene:2505285183 tRNA gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0048 Thein_R0049 Thein_R0049 Thein_R0049 1928994 1929081 + tRNA-Leu IMG reference gene:2505285184 tRNA gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0049 Thein_R0050 Thein_R0050 Thein_R0050 1948823 1948898 + tRNA-Thr IMG reference gene:2505285205 tRNA gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0050 Thein_R0051 Thein_R0051 Thein_R0051 1965259 1965346 + tRNA-Leu IMG reference gene:2505285222 tRNA gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0051 Thein_R0052 Thein_R0052 Thein_R0052 1988270 1988361 + tRNA-Ser IMG reference gene:2505285244 tRNA gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0052 Thein_R0053 Thein_R0053 Thein_R0053 1988456 1988549 + tRNA-Ser IMG reference gene:2505285245 tRNA gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0053 Thein_R0054 Thein_R0054 Thein_R0054 1988576 1988684 + RNA component of signal recognition particle IMG reference gene:2505285246 gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0054 Thein_R0055 Thein_R0055 Thein_R0055 1988684 1988779 + tRNA-Sec IMG reference gene:2505285247 tRNA gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0055 Thein_R0056 Thein_R0056 Thein_R0056 2001996 2002083 + tRNA-Leu IMG reference gene:2505285259 tRNA gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0056 Thein_R0057 Thein_R0057 Thein_R0057 2082129 2082204 + tRNA-Ala IMG reference gene:2505285350 tRNA gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0057 Thein_R0058 Thein_R0058 Thein_R0058 2290897 2290974 - tRNA-Glu IMG reference gene:2505285541 tRNA gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0058 Thein_R0059 Thein_R0059 Thein_R0059 2290999 2291074 - tRNA-Lys IMG reference gene:2505285542 tRNA gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=Thein_R0059