locus-tag class description HL41_00040 PF01384 Phosphate transporter family HL41_00070 PF13335 Magnesium chelatase, subunit ChlI C-terminal HL41_00070 PF01078 Magnesium chelatase, subunit ChlI HL41_00075 PF00137 ATP synthase subunit C HL41_00080 PF00119 ATP synthase A chain HL41_00095 PF01869 BadF/BadG/BcrA/BcrD ATPase family HL41_00100 PF05958 tRNA (Uracil-5-)-methyltransferase HL41_00100 PF01938 TRAM domain HL41_00105 PF00588 SpoU rRNA Methylase family HL41_00120 PF02082 Transcriptional regulator HL41_00145 PF05175 Methyltransferase small domain HL41_00150 PF04055 Radical SAM superfamily HL41_00165 PF00550 Phosphopantetheine attachment site HL41_00170 PF02801 Beta-ketoacyl synthase, C-terminal domain HL41_00170 PF00109 Beta-ketoacyl synthase, N-terminal domain HL41_00175 PF02502 Ribose/Galactose Isomerase HL41_00180 PF01648 4'-phosphopantetheinyl transferase superfamily HL41_00185 PF01256 Carbohydrate kinase HL41_00185 PF03853 YjeF-related protein N-terminus HL41_00195 PF06750 Bacterial Peptidase A24 N-terminal domain HL41_00195 PF01478 Type IV leader peptidase family HL41_00200 PF00989 PAS fold HL41_00200 PF00512 His Kinase A (phospho-acceptor) domain HL41_00200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_00200 PF00672 HAMP domain HL41_00210 PF17805 AsnC-like ligand binding domain HL41_00220 PF01618 MotA/TolQ/ExbB proton channel family HL41_00225 PF02472 Biopolymer transport protein ExbD/TolR HL41_00240 PF02403 Seryl-tRNA synthetase N-terminal domain HL41_00240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HL41_00245 PF00925 GTP cyclohydrolase II HL41_00245 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HL41_00255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HL41_00255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HL41_00255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HL41_00255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HL41_00275 PF02445 Quinolinate synthetase A protein HL41_00280 PF02811 PHP domain HL41_00285 PF06418 CTP synthase N-terminus HL41_00285 PF00117 Glutamine amidotransferase class-I HL41_00300 PF00330 Aconitase family (aconitate hydratase) HL41_00310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HL41_00320 PF14010 Phosphoenolpyruvate carboxylase HL41_00330 PF00313 'Cold-shock' DNA-binding domain HL41_00340 PF00989 PAS fold HL41_00340 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HL41_00340 PF17203 Single cache domain 3 HL41_00340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_00345 PF02899 Phage integrase, N-terminal SAM-like domain HL41_00345 PF00589 Phage integrase family HL41_00355 PF02335 Cytochrome c552 HL41_00360 PF01965 DJ-1/PfpI family HL41_00370 PF01861 Branched-chain polyamine synthase A C-terminal domain HL41_00375 PF08207 Elongation factor P (EF-P) KOW-like domain HL41_00375 PF09285 Elongation factor P, C-terminal HL41_00375 PF01132 Elongation factor P (EF-P) OB domain HL41_00390 PF08448 PAS fold HL41_00390 PF00990 Diguanylate cyclase, GGDEF domain HL41_00395 PF03966 Trm112p-like protein HL41_00405 PF06463 Molybdenum Cofactor Synthesis C HL41_00405 PF04055 Radical SAM superfamily HL41_00415 PF00133 tRNA synthetases class I (I, L, M and V) HL41_00415 PF09334 tRNA synthetases class I (M) HL41_00415 PF01588 Putative tRNA binding domain HL41_00420 PF01230 HIT domain HL41_00425 PF00364 Biotin-requiring enzyme HL41_00430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HL41_00430 PF02785 Biotin carboxylase C-terminal domain HL41_00430 PF00289 Biotin carboxylase, N-terminal domain HL41_00435 PF09936 SAM-dependent RNA methyltransferase HL41_00435 PF01746 tRNA (Guanine-1)-methyltransferase HL41_00440 PF05239 PRC-barrel domain HL41_00440 PF01782 RimM N-terminal domain HL41_00450 PF00886 Ribosomal protein S16 HL41_00455 PF02881 SRP54-type protein, helical bundle domain HL41_00455 PF00448 SRP54-type protein, GTPase domain HL41_00455 PF02978 Signal peptide binding domain HL41_00460 PF05951 Bacterial protein of unknown function (DUF882) HL41_00465 PF03734 L,D-transpeptidase catalytic domain HL41_00470 PF01370 NAD dependent epimerase/dehydratase family HL41_00475 PF00596 Class II Aldolase and Adducin N-terminal domain HL41_00480 PF00202 Aminotransferase class-III HL41_00485 PF02547 Queuosine biosynthesis protein HL41_00490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HL41_00490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HL41_00525 PF00158 Sigma-54 interaction domain HL41_00525 PF00072 Response regulator receiver domain HL41_00525 PF02954 Bacterial regulatory protein, Fis family HL41_00535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HL41_00535 PF00460 Flagella basal body rod protein HL41_00540 PF02049 Flagellar hook-basal body complex protein FliE HL41_00545 PF08345 Flagellar M-ring protein C-terminal HL41_00545 PF01514 Secretory protein of YscJ/FliF family HL41_00550 PF14841 FliG middle domain HL41_00550 PF01706 FliG C-terminal domain HL41_00550 PF14842 FliG N-terminal domain HL41_00560 PF02874 ATP synthase alpha/beta family, beta-barrel domain HL41_00560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HL41_00560 PF18269 T3SS EscN ATPase C-terminal domain HL41_00580 PF01475 Ferric uptake regulator family HL41_00590 PF06508 Queuosine biosynthesis protein QueC HL41_00595 PF08534 Redoxin HL41_00600 PF03358 NADPH-dependent FMN reductase HL41_00605 PF00206 Lyase HL41_00605 PF14698 Argininosuccinate lyase C-terminal HL41_00615 PF03884 DNA gyrase inhibitor YacG HL41_00620 PF07992 Pyridine nucleotide-disulphide oxidoreductase HL41_00645 PF01676 Metalloenzyme superfamily HL41_00645 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase HL41_00650 PF00890 FAD binding domain HL41_00650 PF02910 Fumarate reductase flavoprotein C-term HL41_00660 PF01300 Telomere recombination HL41_00670 PF01784 NIF3 (NGG1p interacting factor 3) HL41_00680 PF00902 Sec-independent protein translocase protein (TatC) HL41_00695 PF00216 Bacterial DNA-binding protein HL41_00705 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HL41_00705 PF06827 Zinc finger found in FPG and IleRS HL41_00705 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HL41_00710 PF01594 AI-2E family transporter HL41_00725 PF08544 GHMP kinases C terminal HL41_00725 PF00288 GHMP kinases N terminal domain HL41_00730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HL41_00730 PF14572 Phosphoribosyl synthetase-associated domain HL41_00735 PF14693 Ribosomal protein TL5, C-terminal domain HL41_00735 PF01386 Ribosomal L25p family HL41_00740 PF01195 Peptidyl-tRNA hydrolase HL41_00750 PF00958 GMP synthase C terminal domain HL41_00750 PF02540 NAD synthase HL41_00750 PF00117 Glutamine amidotransferase class-I HL41_00765 PF01783 Ribosomal L32p protein family HL41_00775 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HL41_00775 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HL41_00815 PF01980 tRNA-methyltransferase O HL41_00820 PF00390 Malic enzyme, N-terminal domain HL41_00820 PF03949 Malic enzyme, NAD binding domain HL41_00825 PF02127 Aminopeptidase I zinc metalloprotease (M18) HL41_00835 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HL41_00855 PF00009 Elongation factor Tu GTP binding domain HL41_00855 PF09106 Elongation factor SelB, winged helix HL41_00855 PF09105 Elongation factor SelB, winged helix HL41_00855 PF03144 Elongation factor Tu domain 2 HL41_00855 PF09107 Elongation factor SelB, winged helix HL41_00860 PF02092 Glycyl-tRNA synthetase beta subunit HL41_00860 PF05746 DALR anticodon binding domain HL41_00865 PF02091 Glycyl-tRNA synthetase alpha subunit HL41_00870 PF02769 AIR synthase related protein, C-terminal domain HL41_00870 PF00586 AIR synthase related protein, N-terminal domain HL41_00895 PF02666 Phosphatidylserine decarboxylase HL41_00905 PF04025 Domain of unknown function (DUF370) HL41_00910 PF00625 Guanylate kinase HL41_00915 PF08032 RNA 2'-O ribose methyltransferase substrate binding HL41_00915 PF00588 SpoU rRNA Methylase family HL41_00930 PF02577 Bifunctional nuclease HL41_00935 PF01336 OB-fold nucleic acid binding domain HL41_00935 PF00152 tRNA synthetases class II (D, K and N) HL41_00940 PF02687 FtsX-like permease family HL41_00940 PF12704 MacB-like periplasmic core domain HL41_00945 PF00005 ABC transporter HL41_00950 PF01103 Surface antigen HL41_00950 PF07244 Surface antigen variable number repeat HL41_00960 PF00460 Flagella basal body rod protein HL41_00960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HL41_00965 PF00460 Flagella basal body rod protein HL41_00965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HL41_00980 PF02119 Flagellar P-ring protein HL41_00995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HL41_00995 PF00460 Flagella basal body rod protein HL41_01005 PF04052 TolB amino-terminal domain HL41_01005 PF07676 WD40-like Beta Propeller Repeat HL41_01010 PF00682 HMGL-like HL41_01015 PF00155 Aminotransferase class I and II HL41_01020 PF03841 L-seryl-tRNA selenium transferase HL41_01020 PF12390 Selenocysteine synthase N terminal HL41_01030 PF12706 Beta-lactamase superfamily domain HL41_01030 PF00753 Metallo-beta-lactamase superfamily HL41_01045 PF00291 Pyridoxal-phosphate dependent enzyme HL41_01045 PF14821 Threonine synthase N terminus HL41_01050 PF04085 rod shape-determining protein MreC HL41_01065 PF01098 Cell cycle protein HL41_01080 PF00213 ATP synthase delta (OSCP) subunit HL41_01085 PF00306 ATP synthase alpha/beta chain, C terminal domain HL41_01085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HL41_01085 PF02874 ATP synthase alpha/beta family, beta-barrel domain HL41_01090 PF00231 ATP synthase HL41_01095 PF02874 ATP synthase alpha/beta family, beta-barrel domain HL41_01095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HL41_01100 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HL41_01100 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HL41_01105 PF01812 5-formyltetrahydrofolate cyclo-ligase family HL41_01110 PF01168 Alanine racemase, N-terminal domain HL41_01125 PF01926 50S ribosome-binding GTPase HL41_01125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HL41_01135 PF01618 MotA/TolQ/ExbB proton channel family HL41_01145 PF01368 DHH family HL41_01145 PF02833 DHHA2 domain HL41_01150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HL41_01150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HL41_01155 PF01025 GrpE HL41_01160 PF00012 Hsp70 protein HL41_01165 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HL41_01185 PF05746 DALR anticodon binding domain HL41_01185 PF03485 Arginyl tRNA synthetase N terminal domain HL41_01185 PF00750 tRNA synthetases class I (R) HL41_01195 PF00583 Acetyltransferase (GNAT) family HL41_01200 PF04358 DsrC like protein HL41_01210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HL41_01210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HL41_01210 PF02770 Acyl-CoA dehydrogenase, middle domain HL41_01215 PF01012 Electron transfer flavoprotein domain HL41_01220 PF00766 Electron transfer flavoprotein FAD-binding domain HL41_01220 PF01012 Electron transfer flavoprotein domain HL41_01230 PF00152 tRNA synthetases class II (D, K and N) HL41_01230 PF02938 GAD domain HL41_01230 PF01336 OB-fold nucleic acid binding domain HL41_01235 PF01026 TatD related DNase HL41_01240 PF00950 ABC 3 transport family HL41_01245 PF00005 ABC transporter HL41_01250 PF03819 MazG nucleotide pyrophosphohydrolase domain HL41_01255 PF00694 Aconitase C-terminal domain HL41_01260 PF00330 Aconitase family (aconitate hydratase) HL41_01265 PF02601 Exonuclease VII, large subunit HL41_01265 PF13742 OB-fold nucleic acid binding domain HL41_01275 PF00348 Polyprenyl synthetase HL41_01285 PF13291 ACT domain HL41_01285 PF04607 Region found in RelA / SpoT proteins HL41_01285 PF02824 TGS domain HL41_01290 PF00830 Ribosomal L28 family HL41_01295 PF02844 Phosphoribosylglycinamide synthetase, N domain HL41_01295 PF02843 Phosphoribosylglycinamide synthetase, C domain HL41_01295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HL41_01300 PF00731 AIR carboxylase HL41_01305 PF07963 Prokaryotic N-terminal methylation motif HL41_01315 PF01018 GTP1/OBG HL41_01315 PF04055 Radical SAM superfamily HL41_01315 PF01926 50S ribosome-binding GTPase HL41_01320 PF04079 Segregation and condensation complex subunit ScpB HL41_01330 PF00117 Glutamine amidotransferase class-I HL41_01335 PF00318 Ribosomal protein S2 HL41_01340 PF00889 Elongation factor TS HL41_01345 PF00696 Amino acid kinase family HL41_01350 PF01765 Ribosome recycling factor HL41_01355 PF01255 Putative undecaprenyl diphosphate synthase HL41_01370 PF01820 D-ala D-ala ligase N-terminus HL41_01370 PF07478 D-ala D-ala ligase C-terminus HL41_01385 PF04055 Radical SAM superfamily HL41_01385 PF16199 Radical_SAM C-terminal domain HL41_01390 PF01266 FAD dependent oxidoreductase HL41_01400 PF02575 YbaB/EbfC DNA-binding family HL41_01405 PF13662 Toprim domain HL41_01405 PF02132 RecR protein HL41_01415 PF17782 DprA winged helix domain HL41_01415 PF02481 DNA recombination-mediator protein A HL41_01430 PF01066 CDP-alcohol phosphatidyltransferase HL41_01440 PF01245 Ribosomal protein L19 HL41_01445 PF01351 Ribonuclease HII HL41_01450 PF02021 Uncharacterised protein family UPF0102 HL41_01465 PF03447 Homoserine dehydrogenase, NAD binding domain HL41_01465 PF01842 ACT domain HL41_01465 PF00742 Homoserine dehydrogenase HL41_01475 PF01966 HD domain HL41_01475 PF00013 KH domain HL41_01475 PF12072 Domain of unknown function (DUF3552) HL41_01520 PF01966 HD domain HL41_01520 PF12072 Domain of unknown function (DUF3552) HL41_01520 PF00013 KH domain HL41_01525 PF13277 YmdB-like protein HL41_01530 PF01327 Polypeptide deformylase HL41_01535 PF07085 DRTGG domain HL41_01540 PF01979 Amidohydrolase family HL41_01550 PF00501 AMP-binding enzyme HL41_01550 PF13193 AMP-binding enzyme C-terminal domain HL41_01550 PF16177 Acetyl-coenzyme A synthetase N-terminus HL41_01565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HL41_01565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HL41_01570 PF01872 RibD C-terminal domain HL41_01580 PF00829 Ribosomal prokaryotic L21 protein HL41_01585 PF01016 Ribosomal L27 protein HL41_01590 PF02660 Glycerol-3-phosphate acyltransferase HL41_01640 PF13247 4Fe-4S dicluster domain HL41_01650 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HL41_01650 PF07685 CobB/CobQ-like glutamine amidotransferase domain HL41_01670 PF01814 Hemerythrin HHE cation binding domain HL41_01710 PF11741 AMIN domain HL41_01710 PF00263 Bacterial type II and III secretion system protein HL41_01710 PF03958 Bacterial type II/III secretion system short domain HL41_01710 PF07660 Secretin and TonB N terminus short domain HL41_01715 PF01134 Glucose inhibited division protein A HL41_01720 PF02699 Preprotein translocase subunit HL41_01725 PF01702 Queuine tRNA-ribosyltransferase HL41_01730 PF00155 Aminotransferase class I and II HL41_01740 PF00700 Bacterial flagellin C-terminal helical region HL41_01740 PF00669 Bacterial flagellin N-terminal helical region HL41_01760 PF00440 Bacterial regulatory proteins, tetR family HL41_01760 PF08359 YsiA-like protein, C-terminal region HL41_01765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HL41_01770 PF00873 AcrB/AcrD/AcrF family HL41_01775 PF02321 Outer membrane efflux protein HL41_01790 PF13476 AAA domain HL41_01815 PF00158 Sigma-54 interaction domain HL41_01815 PF00072 Response regulator receiver domain HL41_01815 PF02954 Bacterial regulatory protein, Fis family HL41_01830 PF00180 Isocitrate/isopropylmalate dehydrogenase HL41_01845 PF01252 Signal peptidase (SPase) II HL41_01850 PF08264 Anticodon-binding domain of tRNA HL41_01850 PF00133 tRNA synthetases class I (I, L, M and V) HL41_01850 PF06827 Zinc finger found in FPG and IleRS HL41_01855 PF01134 Glucose inhibited division protein A HL41_01855 PF13932 GidA associated domain HL41_01870 PF04545 Sigma-70, region 4 HL41_01870 PF04546 Sigma-70, non-essential region HL41_01870 PF04539 Sigma-70 region 3 HL41_01870 PF04542 Sigma-70 region 2 HL41_01870 PF00140 Sigma-70 factor, region 1.2 HL41_01870 PF03979 Sigma-70 factor, region 1.1 HL41_01875 PF13361 UvrD-like helicase C-terminal domain HL41_01875 PF00580 UvrD/REP helicase N-terminal domain HL41_01895 PF00437 Type II/IV secretion system protein HL41_01900 PF00437 Type II/IV secretion system protein HL41_01910 PF00483 Nucleotidyl transferase HL41_01915 PF04851 Type III restriction enzyme, res subunit HL41_01915 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HL41_01915 PF18074 Primosomal protein N C-terminal domain HL41_01915 PF00271 Helicase conserved C-terminal domain HL41_01915 PF17764 3′ DNA-binding domain (3′BD) HL41_01935 PF13186 Iron-sulfur cluster-binding domain HL41_01935 PF04055 Radical SAM superfamily HL41_01940 PF02142 MGS-like domain HL41_01940 PF01808 AICARFT/IMPCHase bienzyme HL41_01950 PF08501 Shikimate dehydrogenase substrate binding domain HL41_01950 PF01488 Shikimate / quinate 5-dehydrogenase HL41_01950 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HL41_01955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HL41_01960 PF01202 Shikimate kinase HL41_01965 PF00753 Metallo-beta-lactamase superfamily HL41_01970 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HL41_01970 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HL41_01970 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HL41_01980 PF02811 PHP domain HL41_01980 PF14716 Helix-hairpin-helix domain HL41_01980 PF14791 DNA polymerase beta thumb HL41_01985 PF17755 UvrA DNA-binding domain HL41_01985 PF00005 ABC transporter HL41_01985 PF17760 UvrA interaction domain HL41_02005 PF01751 Toprim domain HL41_02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_02005 PF00986 DNA gyrase B subunit, carboxyl terminus HL41_02005 PF00204 DNA gyrase B HL41_02010 PF00712 DNA polymerase III beta subunit, N-terminal domain HL41_02010 PF02768 DNA polymerase III beta subunit, C-terminal domain HL41_02010 PF02767 DNA polymerase III beta subunit, central domain HL41_02015 PF07992 Pyridine nucleotide-disulphide oxidoreductase HL41_02020 PF02016 LD-carboxypeptidase N-terminal domain HL41_02020 PF17676 LD-carboxypeptidase C-terminal domain HL41_02040 PF01817 Chorismate mutase type II HL41_02040 PF00800 Prephenate dehydratase HL41_02040 PF01842 ACT domain HL41_02050 PF13184 NusA-like KH domain HL41_02050 PF08529 NusA N-terminal domain HL41_02050 PF00575 S1 RNA binding domain HL41_02055 PF17384 RimP C-terminal SH3 domain HL41_02055 PF02576 RimP N-terminal domain HL41_02065 PF00072 Response regulator receiver domain HL41_02065 PF13188 PAS domain HL41_02065 PF08448 PAS fold HL41_02065 PF00512 His Kinase A (phospho-acceptor) domain HL41_02065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_02115 PF00310 Glutamine amidotransferases class-II HL41_02120 PF13187 4Fe-4S dicluster domain HL41_02120 PF01645 Conserved region in glutamate synthase HL41_02125 PF02954 Bacterial regulatory protein, Fis family HL41_02125 PF00158 Sigma-54 interaction domain HL41_02125 PF02830 V4R domain HL41_02125 PF06505 Activator of aromatic catabolism HL41_02130 PF00120 Glutamine synthetase, catalytic domain HL41_02130 PF03951 Glutamine synthetase, beta-Grasp domain HL41_02135 PF00158 Sigma-54 interaction domain HL41_02135 PF01590 GAF domain HL41_02135 PF02954 Bacterial regulatory protein, Fis family HL41_02145 PF00543 Nitrogen regulatory protein P-II HL41_02150 PF00909 Ammonium Transporter Family HL41_02165 PF02417 Chromate transporter HL41_02175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HL41_02180 PF13520 Amino acid permease HL41_02205 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HL41_02220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HL41_02225 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HL41_02225 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HL41_02245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HL41_02245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HL41_02255 PF00005 ABC transporter HL41_02255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HL41_02270 PF00308 Bacterial dnaA protein HL41_02270 PF08299 Bacterial dnaA protein helix-turn-helix HL41_02270 PF11638 DnaA N-terminal domain HL41_02275 PF01565 FAD binding domain HL41_02275 PF02913 FAD linked oxidases, C-terminal domain HL41_02285 PF02535 ZIP Zinc transporter HL41_02290 PF00158 Sigma-54 interaction domain HL41_02290 PF00072 Response regulator receiver domain HL41_02290 PF02954 Bacterial regulatory protein, Fis family HL41_02295 PF00814 Glycoprotease family HL41_02300 PF13580 SIS domain HL41_02315 PF00465 Iron-containing alcohol dehydrogenase HL41_02335 PF00342 Phosphoglucose isomerase HL41_02340 PF00490 Delta-aminolevulinic acid dehydratase HL41_02345 PF05036 Sporulation related domain HL41_02345 PF03330 Lytic transglycolase HL41_02350 PF14622 Ribonuclease-III-like HL41_02350 PF00035 Double-stranded RNA binding motif HL41_02360 PF01926 50S ribosome-binding GTPase HL41_02360 PF07650 KH domain HL41_02365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_02365 PF08447 PAS fold HL41_02365 PF13426 PAS domain HL41_02370 PF01475 Ferric uptake regulator family HL41_02375 PF00899 ThiF family HL41_02385 PF04055 Radical SAM superfamily HL41_02385 PF06463 Molybdenum Cofactor Synthesis C HL41_02390 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain HL41_02390 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HL41_02395 PF02322 Cytochrome bd terminal oxidase subunit II HL41_02400 PF01654 Cytochrome bd terminal oxidase subunit I HL41_02415 PF03707 Bacterial signalling protein N terminal repeat HL41_02415 PF00990 Diguanylate cyclase, GGDEF domain HL41_02415 PF00563 EAL domain HL41_02420 PF02887 Pyruvate kinase, alpha/beta domain HL41_02420 PF00224 Pyruvate kinase, barrel domain HL41_02420 PF00391 PEP-utilising enzyme, mobile domain HL41_02435 PF01259 SAICAR synthetase HL41_02475 PF01676 Metalloenzyme superfamily HL41_02475 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase HL41_02485 PF01891 Cobalt uptake substrate-specific transmembrane region HL41_02495 PF02361 Cobalt transport protein HL41_02500 PF00005 ABC transporter HL41_02510 PF03773 Predicted permease HL41_02515 PF01022 Bacterial regulatory protein, arsR family HL41_02520 PF08546 Ketopantoate reductase PanE/ApbA C terminal HL41_02520 PF02558 Ketopantoate reductase PanE/ApbA HL41_02530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HL41_02530 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HL41_02550 PF00684 DnaJ central domain HL41_02550 PF00226 DnaJ domain HL41_02550 PF01556 DnaJ C terminal domain HL41_02555 PF03705 CheR methyltransferase, all-alpha domain HL41_02555 PF01739 CheR methyltransferase, SAM binding domain HL41_02560 PF00072 Response regulator receiver domain HL41_02560 PF01339 CheB methylesterase HL41_02565 PF00072 Response regulator receiver domain HL41_02585 PF00072 Response regulator receiver domain HL41_02590 PF04542 Sigma-70 region 2 HL41_02590 PF04539 Sigma-70 region 3 HL41_02590 PF04545 Sigma-70, region 4 HL41_02595 PF10609 NUBPL iron-transfer P-loop NTPase HL41_02600 PF00448 SRP54-type protein, GTPase domain HL41_02605 PF00771 FHIPEP family HL41_02610 PF01312 FlhB HrpN YscU SpaS Family HL41_02615 PF01311 Bacterial export proteins, family 1 HL41_02620 PF01313 Bacterial export proteins, family 3 HL41_02625 PF00813 FliP family HL41_02635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HL41_02640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HL41_02640 PF02154 Flagellar motor switch protein FliM HL41_02660 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HL41_02670 PF01725 Ham1 family HL41_02675 PF03725 3' exoribonuclease family, domain 2 HL41_02675 PF01138 3' exoribonuclease family, domain 1 HL41_02690 PF01118 Semialdehyde dehydrogenase, NAD binding domain HL41_02690 PF02774 Semialdehyde dehydrogenase, dimerisation domain HL41_02700 PF03749 Sugar fermentation stimulation protein RE domain HL41_02700 PF17746 SfsA N-terminal OB domain HL41_02715 PF01925 Sulfite exporter TauE/SafE HL41_02720 PF10672 S-adenosylmethionine-dependent methyltransferase HL41_02720 PF17785 PUA-like domain HL41_02735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HL41_02735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HL41_02735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HL41_02735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HL41_02745 PF02457 DisA bacterial checkpoint controller nucleotide-binding HL41_02750 PF00809 Pterin binding enzyme HL41_02765 PF12399 Branched-chain amino acid ATP-binding cassette transporter HL41_02765 PF00005 ABC transporter HL41_02770 PF04552 Sigma-54, DNA binding domain HL41_02770 PF00309 Sigma-54 factor, Activator interacting domain (AID) HL41_02770 PF04963 Sigma-54 factor, core binding domain HL41_02790 PF01661 Macro domain HL41_02800 PF02743 Cache domain HL41_02800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_02800 PF00672 HAMP domain HL41_02815 PF17200 Single Cache domain 2 HL41_02815 PF00672 HAMP domain HL41_02815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_02825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_02825 PF00672 HAMP domain HL41_02825 PF05227 CHASE3 domain HL41_02830 PF08338 Domain of unknown function (DUF1731) HL41_02830 PF01370 NAD dependent epimerase/dehydratase family HL41_02840 PF02911 Formyl transferase, C-terminal domain HL41_02840 PF00551 Formyl transferase HL41_02845 PF02355 Protein export membrane protein HL41_02845 PF07549 SecD/SecF GG Motif HL41_02850 PF01297 Zinc-uptake complex component A periplasmic HL41_02870 PF00005 ABC transporter HL41_02875 PF01458 Uncharacterized protein family (UPF0051) HL41_02880 PF00155 Aminotransferase class I and II HL41_02885 PF08448 PAS fold HL41_02885 PF00990 Diguanylate cyclase, GGDEF domain HL41_02885 PF00563 EAL domain HL41_02925 PF01370 NAD dependent epimerase/dehydratase family HL41_02930 PF00571 CBS domain HL41_02930 PF03471 Transporter associated domain HL41_02930 PF03741 Integral membrane protein TerC family HL41_02935 PF00795 Carbon-nitrogen hydrolase HL41_02940 PF02441 Flavoprotein HL41_02945 PF00075 RNase H HL41_02950 PF02743 Cache domain HL41_02950 PF00672 HAMP domain HL41_02950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_02980 PF01584 CheW-like domain HL41_02985 PF01627 Hpt domain HL41_02985 PF01584 CheW-like domain HL41_02985 PF02895 Signal transducing histidine kinase, homodimeric domain HL41_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_02985 PF07194 P2 response regulator binding domain HL41_02990 PF00892 EamA-like transporter family HL41_02995 PF01479 S4 domain HL41_02995 PF00849 RNA pseudouridylate synthase HL41_03015 PF01171 PP-loop family HL41_03030 PF01895 PhoU domain HL41_03035 PF10502 Signal peptidase, peptidase S26 HL41_03040 PF00679 Elongation factor G C-terminus HL41_03040 PF00009 Elongation factor Tu GTP binding domain HL41_03040 PF03144 Elongation factor Tu domain 2 HL41_03040 PF06421 GTP-binding protein LepA C-terminus HL41_03050 PF00005 ABC transporter HL41_03080 PF00709 Adenylosuccinate synthetase HL41_03085 PF00289 Biotin carboxylase, N-terminal domain HL41_03085 PF02785 Biotin carboxylase C-terminal domain HL41_03085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HL41_03090 PF01039 Carboxyl transferase domain HL41_03090 PF17848 Acetyl-coA carboxylase zinc finger domain HL41_03105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HL41_03105 PF02142 MGS-like domain HL41_03105 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HL41_03120 PF01649 Ribosomal protein S20 HL41_03130 PF00749 tRNA synthetases class I (E and Q), catalytic domain HL41_03135 PF01875 Memo-like protein HL41_03140 PF02348 Cytidylyltransferase HL41_03145 PF04760 Translation initiation factor IF-2, N-terminal region HL41_03145 PF00009 Elongation factor Tu GTP binding domain HL41_03145 PF11987 Translation-initiation factor 2 HL41_03175 PF01914 MarC family integral membrane protein HL41_03180 PF13520 Amino acid permease HL41_03190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HL41_03195 PF00005 ABC transporter HL41_03195 PF02687 FtsX-like permease family HL41_03195 PF12704 MacB-like periplasmic core domain HL41_03200 PF00005 ABC transporter HL41_03200 PF02687 FtsX-like permease family HL41_03200 PF12704 MacB-like periplasmic core domain HL41_03205 PF00005 ABC transporter HL41_03205 PF12704 MacB-like periplasmic core domain HL41_03205 PF02687 FtsX-like permease family HL41_03225 PF03707 Bacterial signalling protein N terminal repeat HL41_03225 PF00990 Diguanylate cyclase, GGDEF domain HL41_03225 PF00563 EAL domain HL41_03230 PF06470 SMC proteins Flexible Hinge Domain HL41_03230 PF02463 RecF/RecN/SMC N terminal domain HL41_03240 PF08264 Anticodon-binding domain of tRNA HL41_03240 PF00133 tRNA synthetases class I (I, L, M and V) HL41_03240 PF10458 Valyl tRNA synthetase tRNA binding arm HL41_03245 PF00696 Amino acid kinase family HL41_03250 PF07883 Cupin domain HL41_03270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HL41_03305 PF04055 Radical SAM superfamily HL41_03330 PF01595 Cyclin M transmembrane N-terminal domain HL41_03330 PF03471 Transporter associated domain HL41_03330 PF00571 CBS domain HL41_03335 PF03471 Transporter associated domain HL41_03335 PF00571 CBS domain HL41_03335 PF01595 Cyclin M transmembrane N-terminal domain HL41_03355 PF00582 Universal stress protein family HL41_03370 PF01402 Ribbon-helix-helix protein, copG family HL41_03370 PF08753 NikR C terminal nickel binding domain HL41_03375 PF13193 AMP-binding enzyme C-terminal domain HL41_03375 PF00501 AMP-binding enzyme HL41_03380 PF17876 Cold shock domain HL41_03380 PF08206 Ribonuclease B OB domain HL41_03380 PF00773 RNB domain HL41_03380 PF00575 S1 RNA binding domain HL41_03390 PF02637 GatB domain HL41_03390 PF02934 GatB/GatE catalytic domain HL41_03395 PF01008 Initiation factor 2 subunit family HL41_03405 PF00692 dUTPase HL41_03420 PF05198 Translation initiation factor IF-3, N-terminal domain HL41_03420 PF00707 Translation initiation factor IF-3, C-terminal domain HL41_03425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HL41_03425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HL41_03425 PF03129 Anticodon binding domain HL41_03440 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HL41_03440 PF00132 Bacterial transferase hexapeptide (six repeats) HL41_03460 PF14437 MafB19-like deaminase HL41_03470 PF04002 RadC-like JAB domain HL41_03485 PF00793 DAHP synthetase I family HL41_03490 PF04055 Radical SAM superfamily HL41_03490 PF18693 TRAM domain HL41_03490 PF00919 Uncharacterized protein family UPF0004 HL41_03500 PF00764 Arginosuccinate synthase HL41_03505 PF00923 Transaldolase/Fructose-6-phosphate aldolase HL41_03510 PF01569 PAP2 superfamily HL41_03515 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase HL41_03520 PF18073 Rubredoxin metal binding domain HL41_03545 PF00334 Nucleoside diphosphate kinase HL41_03550 PF00586 AIR synthase related protein, N-terminal domain HL41_03550 PF02769 AIR synthase related protein, C-terminal domain HL41_03555 PF00011 Hsp20/alpha crystallin family HL41_03560 PF10431 C-terminal, D2-small domain, of ClpB protein HL41_03560 PF17871 AAA lid domain HL41_03560 PF02861 Clp amino terminal domain, pathogenicity island component HL41_03560 PF00004 ATPase family associated with various cellular activities (AAA) HL41_03560 PF07724 AAA domain (Cdc48 subfamily) HL41_03570 PF03668 P-loop ATPase protein family HL41_03575 PF00583 Acetyltransferase (GNAT) family HL41_03590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HL41_03590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HL41_03595 PF01029 NusB family HL41_03600 PF02224 Cytidylate kinase HL41_03610 PF01380 SIS domain HL41_03625 PF13167 GTP-binding GTPase N-terminal HL41_03625 PF01926 50S ribosome-binding GTPase HL41_03625 PF16360 GTP-binding GTPase Middle Region HL41_03635 PF01479 S4 domain HL41_03635 PF00579 tRNA synthetases class I (W and Y) HL41_03645 PF03900 Porphobilinogen deaminase, C-terminal domain HL41_03645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HL41_03655 PF00586 AIR synthase related protein, N-terminal domain HL41_03655 PF02769 AIR synthase related protein, C-terminal domain HL41_03655 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HL41_03660 PF00815 Histidinol dehydrogenase HL41_03665 PF00365 Phosphofructokinase HL41_03680 PF14489 QueF-like protein HL41_03685 PF01653 NAD-dependent DNA ligase adenylation domain HL41_03685 PF00533 BRCA1 C Terminus (BRCT) domain HL41_03685 PF12826 Helix-hairpin-helix motif HL41_03685 PF03120 NAD-dependent DNA ligase OB-fold domain HL41_03685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HL41_03690 PF00579 tRNA synthetases class I (W and Y) HL41_03705 PF01292 Prokaryotic cytochrome b561 HL41_03720 PF14535 AMP-binding enzyme C-terminal domain HL41_03720 PF00501 AMP-binding enzyme HL41_03730 PF00270 DEAD/DEAH box helicase HL41_03730 PF00271 Helicase conserved C-terminal domain HL41_03735 PF00009 Elongation factor Tu GTP binding domain HL41_03735 PF03764 Elongation factor G, domain IV HL41_03735 PF00679 Elongation factor G C-terminus HL41_03735 PF14492 Elongation Factor G, domain II HL41_03740 PF00994 Probable molybdopterin binding domain HL41_03750 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HL41_03755 PF01869 BadF/BadG/BcrA/BcrD ATPase family HL41_03770 PF01206 Sulfurtransferase TusA HL41_03790 PF08666 SAF domain HL41_03790 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HL41_03795 PF08666 SAF domain HL41_03795 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HL41_03800 PF11146 Protein of unknown function (DUF2905) HL41_03805 PF04055 Radical SAM superfamily HL41_03820 PF01063 Amino-transferase class IV HL41_03835 PF07669 Eco57I restriction-modification methylase HL41_03835 PF12950 TaqI-like C-terminal specificity domain HL41_03840 PF00271 Helicase conserved C-terminal domain HL41_03840 PF00176 SNF2 family N-terminal domain HL41_03845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HL41_03850 PF00501 AMP-binding enzyme HL41_03850 PF01553 Acyltransferase HL41_03855 PF16916 Dimerisation domain of Zinc Transporter HL41_03855 PF01545 Cation efflux family HL41_03860 PF04029 2-phosphosulpholactate phosphatase HL41_03915 PF00271 Helicase conserved C-terminal domain HL41_03915 PF00176 SNF2 family N-terminal domain HL41_03930 PF10627 Curli assembly protein CsgE HL41_03970 PF00795 Carbon-nitrogen hydrolase HL41_03970 PF02540 NAD synthase HL41_03975 PF00120 Glutamine synthetase, catalytic domain HL41_03975 PF03951 Glutamine synthetase, beta-Grasp domain HL41_03985 PF00158 Sigma-54 interaction domain HL41_03985 PF01590 GAF domain HL41_03985 PF02954 Bacterial regulatory protein, Fis family HL41_03995 PF10609 NUBPL iron-transfer P-loop NTPase HL41_04010 PF07195 Flagellar hook-associated protein 2 C-terminus HL41_04010 PF02465 Flagellar hook-associated protein 2 N-terminus HL41_04010 PF07196 Flagellin hook IN motif HL41_04015 PF02561 Flagellar protein FliS HL41_04045 PF01634 ATP phosphoribosyltransferase HL41_04045 PF08029 HisG, C-terminal domain HL41_04050 PF01502 Phosphoribosyl-AMP cyclohydrolase HL41_04055 PF00218 Indole-3-glycerol phosphate synthase HL41_04060 PF00468 Ribosomal protein L34 HL41_04070 PF01809 Putative membrane protein insertion efficiency factor HL41_04075 PF02096 60Kd inner membrane protein HL41_04075 PF14849 YidC periplasmic domain HL41_04085 PF10396 GTP-binding protein TrmE N-terminus HL41_04085 PF01926 50S ribosome-binding GTPase HL41_04085 PF12631 MnmE helical domain HL41_04090 PF08543 Phosphomethylpyrimidine kinase HL41_04095 PF02686 Glu-tRNAGln amidotransferase C subunit HL41_04100 PF01425 Amidase HL41_04105 PF02195 ParB-like nuclease domain HL41_04105 PF17762 HTH domain found in ParB protein HL41_04115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HL41_04115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HL41_04120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HL41_04135 PF00994 Probable molybdopterin binding domain HL41_04135 PF02464 Competence-damaged protein HL41_04135 PF18146 Damage-inducible protein CinA KH domain HL41_04140 PF04608 Phosphatidylglycerophosphatase A HL41_04150 PF00999 Sodium/hydrogen exchanger family HL41_04150 PF02254 TrkA-N domain HL41_04155 PF00990 Diguanylate cyclase, GGDEF domain HL41_04155 PF17158 Membrane-associated sensor, integral membrane domain HL41_04160 PF01743 Poly A polymerase head domain HL41_04160 PF13735 tRNA nucleotidyltransferase domain 2 putative HL41_04160 PF12627 Probable RNA and SrmB- binding site of polymerase A HL41_04165 PF02899 Phage integrase, N-terminal SAM-like domain HL41_04165 PF00589 Phage integrase family HL41_04175 PF00149 Calcineurin-like phosphoesterase HL41_04200 PF02675 S-adenosylmethionine decarboxylase HL41_04210 PF01925 Sulfite exporter TauE/SafE HL41_04220 PF04546 Sigma-70, non-essential region HL41_04220 PF04539 Sigma-70 region 3 HL41_04220 PF04545 Sigma-70, region 4 HL41_04220 PF04539 Sigma-70 region 3 HL41_04220 PF00140 Sigma-70 factor, region 1.2 HL41_04220 PF04545 Sigma-70, region 4 HL41_04220 PF04546 Sigma-70, non-essential region HL41_04220 PF04542 Sigma-70 region 2 HL41_04220 PF00140 Sigma-70 factor, region 1.2 HL41_04220 PF03979 Sigma-70 factor, region 1.1 HL41_04220 PF03979 Sigma-70 factor, region 1.1 HL41_04220 PF04542 Sigma-70 region 2 HL41_04230 PF00488 MutS domain V HL41_04230 PF01713 Smr domain HL41_04235 PF01165 Ribosomal protein S21 HL41_04240 PF00437 Type II/IV secretion system protein HL41_04240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HL41_04250 PF10996 Beta-Casp domain HL41_04250 PF00753 Metallo-beta-lactamase superfamily HL41_04250 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HL41_04265 PF09334 tRNA synthetases class I (M) HL41_04265 PF13603 Leucyl-tRNA synthetase, Domain 2 HL41_04265 PF00133 tRNA synthetases class I (I, L, M and V) HL41_04265 PF08264 Anticodon-binding domain of tRNA HL41_04275 PF00180 Isocitrate/isopropylmalate dehydrogenase HL41_04300 PF02472 Biopolymer transport protein ExbD/TolR HL41_04310 PF01950 Fructose-1,6-bisphosphatase HL41_04315 PF01312 FlhB HrpN YscU SpaS Family HL41_04320 PF01597 Glycine cleavage H-protein HL41_04350 PF02580 D-Tyr-tRNA(Tyr) deacylase HL41_04360 PF00534 Glycosyl transferases group 1 HL41_04360 PF00862 Sucrose synthase HL41_04365 PF00534 Glycosyl transferases group 1 HL41_04375 PF02358 Trehalose-phosphatase HL41_04415 PF02146 Sir2 family HL41_04425 PF01435 Peptidase family M48 HL41_04430 PF00005 ABC transporter HL41_04430 PF00664 ABC transporter transmembrane region HL41_04440 PF08645 Polynucleotide kinase 3 phosphatase HL41_04445 PF00575 S1 RNA binding domain HL41_04445 PF10150 Ribonuclease E/G family HL41_04450 PF01048 Phosphorylase superfamily HL41_04460 PF03916 Polysulphide reductase, NrfD HL41_04465 PF13247 4Fe-4S dicluster domain HL41_04470 PF00384 Molybdopterin oxidoreductase HL41_04470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HL41_04470 PF01568 Molydopterin dinucleotide binding domain HL41_04475 PF05140 ResB-like family HL41_04480 PF13180 PDZ domain HL41_04480 PF03572 Peptidase family S41 HL41_04485 PF02163 Peptidase family M50 HL41_04500 PF00005 ABC transporter HL41_04515 PF00563 EAL domain HL41_04515 PF00990 Diguanylate cyclase, GGDEF domain HL41_04515 PF13426 PAS domain HL41_04520 PF00881 Nitroreductase family HL41_04525 PF00578 AhpC/TSA family HL41_04530 PF00005 ABC transporter HL41_04535 PF00528 Binding-protein-dependent transport system inner membrane component HL41_04540 PF12849 PBP superfamily domain HL41_04545 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HL41_04555 PF01230 HIT domain HL41_04570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HL41_04575 PF03477 ATP cone domain HL41_04580 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HL41_04580 PF01189 16S rRNA methyltransferase RsmB/F HL41_04580 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HL41_04585 PF13419 Haloacid dehalogenase-like hydrolase HL41_04595 PF02325 YGGT family HL41_04600 PF02562 PhoH-like protein HL41_04610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_04610 PF00672 HAMP domain HL41_04610 PF17200 Single Cache domain 2 HL41_04615 PF00990 Diguanylate cyclase, GGDEF domain HL41_04625 PF00118 TCP-1/cpn60 chaperonin family HL41_04630 PF00166 Chaperonin 10 Kd subunit HL41_04640 PF00004 ATPase family associated with various cellular activities (AAA) HL41_04640 PF05362 Lon protease (S16) C-terminal proteolytic domain HL41_04640 PF02190 ATP-dependent protease La (LON) substrate-binding domain HL41_04670 PF04055 Radical SAM superfamily HL41_04670 PF01938 TRAM domain HL41_04670 PF00919 Uncharacterized protein family UPF0004 HL41_04680 PF00072 Response regulator receiver domain HL41_04680 PF00158 Sigma-54 interaction domain HL41_04680 PF02954 Bacterial regulatory protein, Fis family HL41_04685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_04685 PF00512 His Kinase A (phospho-acceptor) domain HL41_04690 PF00535 Glycosyl transferase family 2 HL41_04695 PF17191 RecG wedge domain HL41_04695 PF00270 DEAD/DEAH box helicase HL41_04695 PF00271 Helicase conserved C-terminal domain HL41_04705 PF02153 Prephenate dehydrogenase HL41_04705 PF01817 Chorismate mutase type II HL41_04710 PF01790 Prolipoprotein diacylglyceryl transferase HL41_04715 PF00730 HhH-GPD superfamily base excision DNA repair protein HL41_04715 PF00633 Helix-hairpin-helix motif HL41_04725 PF01411 tRNA synthetases class II (A) HL41_04725 PF02272 DHHA1 domain HL41_04725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HL41_04735 PF00438 S-adenosylmethionine synthetase, N-terminal domain HL41_04735 PF02773 S-adenosylmethionine synthetase, C-terminal domain HL41_04735 PF02772 S-adenosylmethionine synthetase, central domain HL41_04740 PF05221 S-adenosyl-L-homocysteine hydrolase HL41_04740 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HL41_04745 PF00677 Lumazine binding domain HL41_04755 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HL41_04770 PF00091 Tubulin/FtsZ family, GTPase domain HL41_04770 PF12327 FtsZ family, C-terminal domain HL41_04775 PF02491 SHS2 domain inserted in FTSA HL41_04780 PF08478 POTRA domain, FtsQ-type HL41_04780 PF03799 Cell division protein FtsQ HL41_04790 PF08245 Mur ligase middle domain HL41_04790 PF02875 Mur ligase family, glutamate ligase domain HL41_04790 PF01225 Mur ligase family, catalytic domain HL41_04805 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HL41_04805 PF00953 Glycosyl transferase family 4 HL41_04810 PF02875 Mur ligase family, glutamate ligase domain HL41_04810 PF01225 Mur ligase family, catalytic domain HL41_04810 PF08245 Mur ligase middle domain HL41_04815 PF08245 Mur ligase middle domain HL41_04815 PF02875 Mur ligase family, glutamate ligase domain HL41_04815 PF01225 Mur ligase family, catalytic domain HL41_04830 PF01795 MraW methylase family HL41_04835 PF02381 MraZ protein, putative antitoxin-like HL41_04880 PF00589 Phage integrase family HL41_04880 PF02899 Phage integrase, N-terminal SAM-like domain HL41_04935 PF04055 Radical SAM superfamily HL41_04940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HL41_04940 PF01842 ACT domain HL41_04940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HL41_04945 PF00266 Aminotransferase class-V HL41_04950 PF03449 Transcription elongation factor, N-terminal HL41_04950 PF01272 Transcription elongation factor, GreA/GreB, C-term HL41_04955 PF01808 AICARFT/IMPCHase bienzyme HL41_04955 PF02142 MGS-like domain HL41_04960 PF02684 Lipid-A-disaccharide synthetase HL41_04975 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HL41_04975 PF00132 Bacterial transferase hexapeptide (six repeats) HL41_04980 PF07977 FabA-like domain HL41_04995 PF00005 ABC transporter HL41_05000 PF02405 Permease MlaE HL41_05005 PF00920 Dehydratase family HL41_05010 PF01106 NifU-like domain HL41_05015 PF01192 RNA polymerase Rpb6 HL41_05020 PF01556 DnaJ C terminal domain HL41_05020 PF00684 DnaJ central domain HL41_05020 PF00226 DnaJ domain HL41_05025 PF01967 MoaC family HL41_05030 PF01258 Prokaryotic dksA/traR C4-type zinc finger HL41_05035 PF17755 UvrA DNA-binding domain HL41_05035 PF17760 UvrA interaction domain HL41_05040 PF12838 4Fe-4S dicluster domain HL41_05040 PF00037 4Fe-4S binding domain HL41_05050 PF01479 S4 domain HL41_05050 PF00849 RNA pseudouridylate synthase HL41_05060 PF00571 CBS domain HL41_05080 PF17820 PDZ domain HL41_05080 PF02163 Peptidase family M50 HL41_05085 PF00814 Glycoprotease family HL41_05090 PF00528 Binding-protein-dependent transport system inner membrane component HL41_05095 PF12911 N-terminal TM domain of oligopeptide transport permease C HL41_05095 PF00528 Binding-protein-dependent transport system inner membrane component HL41_05105 PF09335 SNARE associated Golgi protein HL41_05110 PF03548 Outer membrane lipoprotein carrier protein LolA HL41_05135 PF00374 Nickel-dependent hydrogenase HL41_05140 PF01924 Hydrogenase formation hypA family HL41_05145 PF01455 HupF/HypC family HL41_05150 PF01066 CDP-alcohol phosphatidyltransferase HL41_05155 PF13614 AAA domain HL41_05160 PF01040 UbiA prenyltransferase family HL41_05175 PF01119 DNA mismatch repair protein, C-terminal domain HL41_05175 PF08676 MutL C terminal dimerisation domain HL41_05185 PF00056 lactate/malate dehydrogenase, NAD binding domain HL41_05185 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HL41_05195 PF00860 Permease family HL41_05210 PF00773 RNB domain HL41_05210 PF00575 S1 RNA binding domain HL41_05240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HL41_05240 PF07497 Rho termination factor, RNA-binding domain HL41_05240 PF07498 Rho termination factor, N-terminal domain HL41_05275 PF00004 ATPase family associated with various cellular activities (AAA) HL41_05275 PF02190 ATP-dependent protease La (LON) substrate-binding domain HL41_05275 PF05362 Lon protease (S16) C-terminal proteolytic domain HL41_05280 PF10431 C-terminal, D2-small domain, of ClpB protein HL41_05280 PF06689 ClpX C4-type zinc finger HL41_05280 PF07724 AAA domain (Cdc48 subfamily) HL41_05285 PF00574 Clp protease HL41_05290 PF05697 Bacterial trigger factor protein (TF) HL41_05290 PF05698 Bacterial trigger factor protein (TF) C-terminus HL41_05290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HL41_05305 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HL41_05305 PF01000 RNA polymerase Rpb3/RpoA insert domain HL41_05305 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HL41_05310 PF00163 Ribosomal protein S4/S9 N-terminal domain HL41_05310 PF01479 S4 domain HL41_05315 PF00411 Ribosomal protein S11 HL41_05320 PF00416 Ribosomal protein S13/S18 HL41_05325 PF00444 Ribosomal protein L36 HL41_05330 PF01176 Translation initiation factor 1A / IF-1 HL41_05335 PF00557 Metallopeptidase family M24 HL41_05340 PF05191 Adenylate kinase, active site lid HL41_05345 PF00344 SecY translocase HL41_05350 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HL41_05355 PF00327 Ribosomal protein L30p/L7e HL41_05360 PF03719 Ribosomal protein S5, C-terminal domain HL41_05360 PF00333 Ribosomal protein S5, N-terminal domain HL41_05365 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HL41_05375 PF00410 Ribosomal protein S8 HL41_05380 PF00253 Ribosomal protein S14p/S29e HL41_05385 PF00673 ribosomal L5P family C-terminus HL41_05385 PF00281 Ribosomal protein L5 HL41_05390 PF00467 KOW motif HL41_05390 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HL41_05395 PF00238 Ribosomal protein L14p/L23e HL41_05400 PF00366 Ribosomal protein S17 HL41_05405 PF00831 Ribosomal L29 protein HL41_05410 PF00252 Ribosomal protein L16p/L10e HL41_05415 PF07650 KH domain HL41_05415 PF00189 Ribosomal protein S3, C-terminal domain HL41_05420 PF00237 Ribosomal protein L22p/L17e HL41_05425 PF00203 Ribosomal protein S19 HL41_05430 PF00181 Ribosomal Proteins L2, RNA binding domain HL41_05430 PF03947 Ribosomal Proteins L2, C-terminal domain HL41_05435 PF00276 Ribosomal protein L23 HL41_05440 PF00573 Ribosomal protein L4/L1 family HL41_05445 PF00297 Ribosomal protein L3 HL41_05450 PF00338 Ribosomal protein S10p/S20e HL41_05455 PF03144 Elongation factor Tu domain 2 HL41_05455 PF00009 Elongation factor Tu GTP binding domain HL41_05455 PF03143 Elongation factor Tu C-terminal domain HL41_05460 PF00679 Elongation factor G C-terminus HL41_05460 PF03764 Elongation factor G, domain IV HL41_05460 PF14492 Elongation Factor G, domain II HL41_05460 PF00009 Elongation factor Tu GTP binding domain HL41_05460 PF03144 Elongation factor Tu domain 2 HL41_05465 PF00177 Ribosomal protein S7p/S5e HL41_05470 PF00164 Ribosomal protein S12/S23 HL41_05475 PF00004 ATPase family associated with various cellular activities (AAA) HL41_05475 PF16193 AAA C-terminal domain HL41_05475 PF12002 MgsA AAA+ ATPase C terminal HL41_05485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HL41_05485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HL41_05490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HL41_05500 PF00464 Serine hydroxymethyltransferase HL41_05505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HL41_05510 PF00226 DnaJ domain HL41_05510 PF01556 DnaJ C terminal domain HL41_05515 PF17284 Spermidine synthase tetramerisation domain HL41_05525 PF00881 Nitroreductase family HL41_05530 PF13098 Thioredoxin-like domain HL41_05530 PF10411 Disulfide bond isomerase protein N-terminus HL41_05535 PF01871 AMMECR1 HL41_05550 PF00881 Nitroreductase family HL41_05555 PF13098 Thioredoxin-like domain HL41_05555 PF10411 Disulfide bond isomerase protein N-terminus HL41_05560 PF01871 AMMECR1 HL41_05580 PF01556 DnaJ C terminal domain HL41_05580 PF00226 DnaJ domain HL41_05580 PF00684 DnaJ central domain HL41_05585 PF00696 Amino acid kinase family HL41_05585 PF01842 ACT domain HL41_05585 PF13840 ACT domain HL41_05590 PF00682 HMGL-like HL41_05590 PF08502 LeuA allosteric (dimerisation) domain HL41_05600 PF09190 DALR domain HL41_05600 PF01406 tRNA synthetases class I (C) catalytic domain HL41_05610 PF00475 Imidazoleglycerol-phosphate dehydratase HL41_05615 PF01416 tRNA pseudouridine synthase HL41_05620 PF02774 Semialdehyde dehydrogenase, dimerisation domain HL41_05620 PF01118 Semialdehyde dehydrogenase, NAD binding domain HL41_05625 PF00380 Ribosomal protein S9/S16 HL41_05630 PF00572 Ribosomal protein L13 HL41_05645 PF01145 SPFH domain / Band 7 family HL41_05655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HL41_05655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HL41_05655 PF00205 Thiamine pyrophosphate enzyme, central domain HL41_05660 PF01842 ACT domain HL41_05660 PF10369 Small subunit of acetolactate synthase HL41_05665 PF02780 Transketolase, C-terminal domain HL41_05665 PF00456 Transketolase, thiamine diphosphate binding domain HL41_05665 PF02779 Transketolase, pyrimidine binding domain HL41_05670 PF00902 Sec-independent protein translocase protein (TatC) HL41_05675 PF02416 mttA/Hcf106 family HL41_05685 PF08679 Dissimilatory sulfite reductase D (DsrD) HL41_05695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HL41_05695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HL41_05700 PF00005 ABC transporter HL41_05740 PF00398 Ribosomal RNA adenine dimethylase HL41_05760 PF01894 Uncharacterised protein family UPF0047 HL41_05770 PF00682 HMGL-like HL41_05770 PF08502 LeuA allosteric (dimerisation) domain HL41_05800 PF07690 Major Facilitator Superfamily HL41_05835 PF02075 Crossover junction endodeoxyribonuclease RuvC HL41_05840 PF01709 Transcriptional regulator HL41_05855 PF00301 Rubredoxin HL41_05855 PF01613 Flavin reductase like domain HL41_05875 PF01121 Dephospho-CoA kinase HL41_05880 PF01479 S4 domain HL41_05880 PF00849 RNA pseudouridylate synthase HL41_05900 PF00117 Glutamine amidotransferase class-I HL41_05900 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HL41_05920 PF00753 Metallo-beta-lactamase superfamily HL41_05920 PF00258 Flavodoxin HL41_05935 PF00301 Rubredoxin HL41_05945 PF06397 Desulfoferrodoxin, N-terminal domain HL41_05945 PF01880 Desulfoferrodoxin HL41_05960 PF03483 B3/4 domain HL41_05960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HL41_05960 PF01588 Putative tRNA binding domain HL41_05960 PF03147 Ferredoxin-fold anticodon binding domain HL41_05960 PF03484 tRNA synthetase B5 domain HL41_05965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HL41_05965 PF01409 tRNA synthetases class II core domain (F) HL41_05970 PF00453 Ribosomal protein L20 HL41_05975 PF01632 Ribosomal protein L35 HL41_05980 PF02548 Ketopantoate hydroxymethyltransferase HL41_06025 PF07670 Nucleoside recognition HL41_06025 PF04023 FeoA domain HL41_06025 PF07664 Ferrous iron transport protein B C terminus HL41_06025 PF17910 FeoB cytosolic helical domain HL41_06025 PF02421 Ferrous iron transport protein B HL41_06030 PF04023 FeoA domain HL41_06040 PF00990 Diguanylate cyclase, GGDEF domain HL41_06040 PF17158 Membrane-associated sensor, integral membrane domain HL41_06050 PF10417 C-terminal domain of 1-Cys peroxiredoxin HL41_06050 PF00578 AhpC/TSA family HL41_06065 PF02915 Rubrerythrin HL41_06070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HL41_06070 PF07559 Flagellar basal body protein FlaE HL41_06070 PF00460 Flagella basal body rod protein HL41_06075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HL41_06075 PF00460 Flagella basal body rod protein HL41_06075 PF07559 Flagellar basal body protein FlaE HL41_06090 PF00361 Proton-conducting membrane transporter HL41_06095 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HL41_06095 PF00361 Proton-conducting membrane transporter HL41_06100 PF00361 Proton-conducting membrane transporter HL41_06100 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HL41_06105 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HL41_06120 PF00146 NADH dehydrogenase HL41_06125 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HL41_06135 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HL41_06140 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HL41_06145 PF12800 4Fe-4S binding domain HL41_06145 PF13247 4Fe-4S dicluster domain HL41_06155 PF13380 CoA binding domain HL41_06160 PF00162 Phosphoglycerate kinase HL41_06160 PF00121 Triosephosphate isomerase HL41_06165 PF00121 Triosephosphate isomerase HL41_06165 PF00162 Phosphoglycerate kinase HL41_06170 PF00885 6,7-dimethyl-8-ribityllumazine synthase HL41_06185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HL41_06185 PF00391 PEP-utilising enzyme, mobile domain HL41_06185 PF02896 PEP-utilising enzyme, TIM barrel domain HL41_06190 PF01668 SmpB protein HL41_06195 PF13476 AAA domain HL41_06200 PF12804 MobA-like NTP transferase domain HL41_06220 PF01048 Phosphorylase superfamily HL41_06225 PF02621 Menaquinone biosynthesis HL41_06230 PF01618 MotA/TolQ/ExbB proton channel family HL41_06235 PF00085 Thioredoxin HL41_06255 PF01142 tRNA pseudouridine synthase D (TruD) HL41_06260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HL41_06265 PF00953 Glycosyl transferase family 4 HL41_06270 PF00483 Nucleotidyl transferase HL41_06270 PF01050 Mannose-6-phosphate isomerase HL41_06280 PF00483 Nucleotidyl transferase HL41_06285 PF08544 GHMP kinases C terminal HL41_06285 PF00288 GHMP kinases N terminal domain HL41_06305 PF00535 Glycosyl transferase family 2 HL41_06315 PF02350 UDP-N-acetylglucosamine 2-epimerase HL41_06410 PF03063 Prismane/CO dehydrogenase family HL41_06415 PF04321 RmlD substrate binding domain HL41_06420 PF16363 GDP-mannose 4,6 dehydratase HL41_06425 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HL41_06430 PF00483 Nucleotidyl transferase HL41_06440 PF00582 Universal stress protein family HL41_06460 PF01368 DHH family HL41_06460 PF02272 DHHA1 domain HL41_06460 PF17768 RecJ OB domain HL41_06460 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HL41_06465 PF01370 NAD dependent epimerase/dehydratase family HL41_06470 PF07992 Pyridine nucleotide-disulphide oxidoreductase HL41_06475 PF01472 PUA domain HL41_06475 PF00696 Amino acid kinase family HL41_06490 PF07075 Protein of unknown function (DUF1343) HL41_06500 PF05190 MutS family domain IV HL41_06500 PF00488 MutS domain V HL41_06500 PF05192 MutS domain III HL41_06500 PF05188 MutS domain II HL41_06500 PF01624 MutS domain I HL41_06505 PF01467 Cytidylyltransferase-like HL41_06510 PF00171 Aldehyde dehydrogenase family HL41_06520 PF01728 FtsJ-like methyltransferase HL41_06520 PF01479 S4 domain HL41_06525 PF13533 Biotin-lipoyl like HL41_06530 PF00005 ABC transporter HL41_06550 PF01578 Cytochrome C assembly protein HL41_06560 PF00436 Single-strand binding protein family HL41_06580 PF00690 Cation transporter/ATPase, N-terminus HL41_06580 PF00689 Cation transporting ATPase, C-terminus HL41_06585 PF00154 recA bacterial DNA recombination protein HL41_06595 PF00113 Enolase, C-terminal TIM barrel domain HL41_06595 PF03952 Enolase, N-terminal domain HL41_06605 PF02885 Glycosyl transferase family, helical bundle domain HL41_06605 PF00591 Glycosyl transferase family, a/b domain HL41_06625 PF00301 Rubredoxin HL41_06640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HL41_06645 PF17827 PrmC N-terminal domain HL41_06645 PF05175 Methyltransferase small domain HL41_06660 PF00482 Type II secretion system (T2SS), protein F HL41_06665 PF00478 IMP dehydrogenase / GMP reductase domain HL41_06665 PF00571 CBS domain HL41_06670 PF02541 Ppx/GppA phosphatase family HL41_06670 PF01761 3-dehydroquinate synthase HL41_06675 PF01343 Peptidase family S49 HL41_06680 PF00575 S1 RNA binding domain HL41_06710 PF01964 Radical SAM ThiC family HL41_06720 PF00156 Phosphoribosyl transferase domain HL41_06730 PF01926 50S ribosome-binding GTPase HL41_06730 PF06071 Protein of unknown function (DUF933) HL41_06740 PF00534 Glycosyl transferases group 1 HL41_06740 PF13439 Glycosyltransferase Family 4 HL41_06765 PF01513 ATP-NAD kinase HL41_06780 PF17284 Spermidine synthase tetramerisation domain HL41_06800 PF00933 Glycosyl hydrolase family 3 N terminal domain HL41_06805 PF00266 Aminotransferase class-V HL41_06810 PF17915 Reverse gyrase zinc finger HL41_06810 PF00270 DEAD/DEAH box helicase HL41_06810 PF01751 Toprim domain HL41_06810 PF01131 DNA topoisomerase HL41_06815 PF01578 Cytochrome C assembly protein HL41_06820 PF00571 CBS domain HL41_06820 PF00478 IMP dehydrogenase / GMP reductase domain HL41_07175 PF00155 Aminotransferase class I and II HL41_07180 PF01658 Myo-inositol-1-phosphate synthase HL41_07185 PF03989 DNA gyrase C-terminal domain, beta-propeller HL41_07185 PF00521 DNA gyrase/topoisomerase IV, subunit A HL41_07195 PF00117 Glutamine amidotransferase class-I HL41_07195 PF02885 Glycosyl transferase family, helical bundle domain HL41_07195 PF00591 Glycosyl transferase family, a/b domain HL41_07210 PF07992 Pyridine nucleotide-disulphide oxidoreductase HL41_07210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HL41_07215 PF02421 Ferrous iron transport protein B HL41_07215 PF07670 Nucleoside recognition HL41_07215 PF04023 FeoA domain HL41_07215 PF07664 Ferrous iron transport protein B C terminus HL41_07215 PF17910 FeoB cytosolic helical domain HL41_07220 PF00557 Metallopeptidase family M24 HL41_07220 PF01321 Creatinase/Prolidase N-terminal domain HL41_07235 PF02581 Thiamine monophosphate synthase HL41_07240 PF04055 Radical SAM superfamily HL41_07255 PF00672 HAMP domain HL41_07255 PF00512 His Kinase A (phospho-acceptor) domain HL41_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_07260 PF00072 Response regulator receiver domain HL41_07260 PF02954 Bacterial regulatory protein, Fis family HL41_07260 PF00158 Sigma-54 interaction domain HL41_07275 PF01070 FMN-dependent dehydrogenase HL41_07290 PF02589 LUD domain HL41_07295 PF02754 Cysteine-rich domain HL41_07300 PF02913 FAD linked oxidases, C-terminal domain HL41_07300 PF01565 FAD binding domain HL41_07305 PF02652 L-lactate permease HL41_07315 PF00583 Acetyltransferase (GNAT) family HL41_07315 PF13380 CoA binding domain HL41_07315 PF13607 Succinyl-CoA ligase like flavodoxin domain HL41_07320 PF07085 DRTGG domain HL41_07335 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HL41_07335 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HL41_07340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HL41_07345 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HL41_07350 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HL41_07350 PF00374 Nickel-dependent hydrogenase HL41_07365 PF00361 Proton-conducting membrane transporter HL41_07370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HL41_07400 PF01209 ubiE/COQ5 methyltransferase family HL41_07410 PF01979 Amidohydrolase family HL41_07415 PF04055 Radical SAM superfamily HL41_07420 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HL41_07420 PF12557 Cob(I)alamin adenosyltransferase N terminal HL41_07435 PF00291 Pyridoxal-phosphate dependent enzyme HL41_07450 PF01979 Amidohydrolase family HL41_07455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HL41_07455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HL41_07460 PF03641 Possible lysine decarboxylase HL41_07465 PF11967 Recombination protein O N terminal HL41_07465 PF02565 Recombination protein O C terminal HL41_07475 PF13180 PDZ domain HL41_07475 PF17820 PDZ domain HL41_07485 PF05698 Bacterial trigger factor protein (TF) C-terminus HL41_07490 PF00132 Bacterial transferase hexapeptide (six repeats) HL41_07490 PF12804 MobA-like NTP transferase domain HL41_07505 PF01717 Cobalamin-independent synthase, Catalytic domain HL41_07505 PF08267 Cobalamin-independent synthase, N-terminal domain HL41_07515 PF00834 Ribulose-phosphate 3 epimerase family HL41_07530 PF01435 Peptidase family M48 HL41_07560 PF00403 Heavy-metal-associated domain HL41_07570 PF08495 FIST N domain HL41_07605 PF00588 SpoU rRNA Methylase family HL41_07605 PF08032 RNA 2'-O ribose methyltransferase substrate binding HL41_07610 PF02649 Type I GTP cyclohydrolase folE2 HL41_07615 PF00809 Pterin binding enzyme HL41_07620 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit HL41_07620 PF04060 Putative Fe-S cluster HL41_07625 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain HL41_07625 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit HL41_07630 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit HL41_07655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HL41_07655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HL41_07660 PF01268 Formate--tetrahydrofolate ligase HL41_07695 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HL41_07700 PF00675 Insulinase (Peptidase family M16) HL41_07700 PF05193 Peptidase M16 inactive domain HL41_07715 PF18019 HD domain HL41_07715 PF00270 DEAD/DEAH box helicase HL41_07715 PF18395 Cas3 C-terminal domain HL41_07755 PF01867 CRISPR associated protein Cas1 HL41_07760 PF09827 CRISPR associated protein Cas2 HL41_07770 PF00176 SNF2 family N-terminal domain HL41_07770 PF00271 Helicase conserved C-terminal domain HL41_07795 PF01934 Protein of unknown function DUF86 HL41_07815 PF02441 Flavoprotein HL41_07815 PF04127 DNA / pantothenate metabolism flavoprotein HL41_07830 PF12849 PBP superfamily domain HL41_07870 PF12729 Four helix bundle sensory module for signal transduction HL41_07870 PF00672 HAMP domain HL41_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_07885 PF13439 Glycosyltransferase Family 4 HL41_07885 PF00534 Glycosyl transferases group 1 HL41_07900 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HL41_07905 PF00534 Glycosyl transferases group 1 HL41_07905 PF13439 Glycosyltransferase Family 4 HL41_07910 PF18152 DAHP synthase ferredoxin-like domain HL41_07910 PF00793 DAHP synthetase I family HL41_07925 PF00919 Uncharacterized protein family UPF0004 HL41_07925 PF04055 Radical SAM superfamily HL41_07935 PF02689 Helicase HL41_07935 PF05970 PIF1-like helicase HL41_07960 PF00291 Pyridoxal-phosphate dependent enzyme HL41_07965 PF00290 Tryptophan synthase alpha chain HL41_07975 PF01678 Diaminopimelate epimerase HL41_07980 PF00701 Dihydrodipicolinate synthetase family HL41_07985 PF03358 NADPH-dependent FMN reductase HL41_07995 PF01451 Low molecular weight phosphotyrosine protein phosphatase HL41_08010 PF00563 EAL domain HL41_08010 PF12792 CSS motif domain associated with EAL HL41_08020 PF07733 Bacterial DNA polymerase III alpha NTPase domain HL41_08020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HL41_08020 PF14579 Helix-hairpin-helix motif HL41_08020 PF02811 PHP domain HL41_08025 PF00210 Ferritin-like domain HL41_08030 PF01189 16S rRNA methyltransferase RsmB/F HL41_08030 PF01029 NusB family HL41_08035 PF17757 UvrB interaction domain HL41_08035 PF12344 Ultra-violet resistance protein B HL41_08035 PF02151 UvrB/uvrC motif HL41_08035 PF04851 Type III restriction enzyme, res subunit HL41_08035 PF00271 Helicase conserved C-terminal domain HL41_08060 PF01197 Ribosomal protein L31 HL41_08065 PF00472 RF-1 domain HL41_08065 PF03462 PCRF domain HL41_08095 PF10385 RNA polymerase beta subunit external 1 domain HL41_08095 PF04565 RNA polymerase Rpb2, domain 3 HL41_08095 PF04560 RNA polymerase Rpb2, domain 7 HL41_08095 PF00562 RNA polymerase Rpb2, domain 6 HL41_08095 PF04563 RNA polymerase beta subunit HL41_08095 PF04561 RNA polymerase Rpb2, domain 2 HL41_08125 PF02542 YgbB family HL41_08130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HL41_08140 PF00999 Sodium/hydrogen exchanger family HL41_08145 PF02677 Epoxyqueuosine reductase QueH HL41_08160 PF00149 Calcineurin-like phosphoesterase HL41_08170 PF01113 Dihydrodipicolinate reductase, N-terminus HL41_08170 PF05173 Dihydrodipicolinate reductase, C-terminus HL41_08190 PF01177 Asp/Glu/Hydantoin racemase HL41_08200 PF00202 Aminotransferase class-III HL41_08205 PF00919 Uncharacterized protein family UPF0004 HL41_08205 PF01938 TRAM domain HL41_08205 PF04055 Radical SAM superfamily HL41_08215 PF00994 Probable molybdopterin binding domain HL41_08215 PF03453 MoeA N-terminal region (domain I and II) HL41_08215 PF03454 MoeA C-terminal region (domain IV) HL41_08225 PF00158 Sigma-54 interaction domain HL41_08225 PF00072 Response regulator receiver domain HL41_08225 PF02954 Bacterial regulatory protein, Fis family HL41_08235 PF00512 His Kinase A (phospho-acceptor) domain HL41_08235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_08240 PF02954 Bacterial regulatory protein, Fis family HL41_08240 PF00072 Response regulator receiver domain HL41_08240 PF00158 Sigma-54 interaction domain HL41_08245 PF02896 PEP-utilising enzyme, TIM barrel domain HL41_08245 PF00391 PEP-utilising enzyme, mobile domain HL41_08245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HL41_08250 PF07702 UTRA domain HL41_08250 PF00392 Bacterial regulatory proteins, gntR family HL41_08270 PF03600 Citrate transporter HL41_08275 PF00582 Universal stress protein family HL41_08280 PF02237 Biotin protein ligase C terminal domain HL41_08280 PF03099 Biotin/lipoate A/B protein ligase family HL41_08280 PF08279 HTH domain HL41_08290 PF00582 Universal stress protein family HL41_08310 PF01975 Survival protein SurE HL41_08315 PF01960 ArgJ family HL41_08320 PF00005 ABC transporter HL41_08330 PF00528 Binding-protein-dependent transport system inner membrane component HL41_08335 PF12849 PBP superfamily domain HL41_08340 PF00072 Response regulator receiver domain HL41_08340 PF00486 Transcriptional regulatory protein, C terminal HL41_08345 PF00512 His Kinase A (phospho-acceptor) domain HL41_08345 PF18698 Histidine kinase sensor domain HL41_08345 PF00672 HAMP domain HL41_08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_08345 PF00989 PAS fold HL41_08350 PF00593 TonB dependent receptor HL41_08350 PF07715 TonB-dependent Receptor Plug Domain HL41_08355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HL41_08360 PF04551 GcpE protein HL41_08375 PF13247 4Fe-4S dicluster domain HL41_08385 PF02881 SRP54-type protein, helical bundle domain HL41_08385 PF00448 SRP54-type protein, GTPase domain HL41_08395 PF03631 Virulence factor BrkB HL41_08405 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HL41_08405 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HL41_08405 PF00037 4Fe-4S binding domain HL41_08410 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HL41_08410 PF00037 4Fe-4S binding domain HL41_08410 PF02256 Iron hydrogenase small subunit HL41_08410 PF02906 Iron only hydrogenase large subunit, C-terminal domain HL41_08425 PF13187 4Fe-4S dicluster domain HL41_08425 PF02906 Iron only hydrogenase large subunit, C-terminal domain HL41_08435 PF10415 Fumarase C C-terminus HL41_08435 PF00206 Lyase HL41_08485 PF00474 Sodium:solute symporter family HL41_08490 PF04341 Protein of unknown function, DUF485 HL41_08495 PF01926 50S ribosome-binding GTPase HL41_08505 PF00294 pfkB family carbohydrate kinase HL41_08520 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HL41_08530 PF03129 Anticodon binding domain HL41_08530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HL41_08530 PF04073 Aminoacyl-tRNA editing domain HL41_08535 PF02705 K+ potassium transporter HL41_08555 PF00501 AMP-binding enzyme HL41_08555 PF14535 AMP-binding enzyme C-terminal domain HL41_08565 PF00501 AMP-binding enzyme HL41_08565 PF14535 AMP-binding enzyme C-terminal domain HL41_08570 PF12727 PBP superfamily domain HL41_08570 PF12728 Helix-turn-helix domain HL41_08580 PF13247 4Fe-4S dicluster domain HL41_08585 PF01568 Molydopterin dinucleotide binding domain HL41_08585 PF00384 Molybdopterin oxidoreductase HL41_08585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HL41_08590 PF01568 Molydopterin dinucleotide binding domain HL41_08590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HL41_08590 PF00384 Molybdopterin oxidoreductase HL41_08605 PF03968 OstA-like protein HL41_08605 PF04453 LPS transport system D HL41_08625 PF02754 Cysteine-rich domain HL41_08630 PF02085 Class III cytochrome C family HL41_08640 PF13247 4Fe-4S dicluster domain HL41_08645 PF03916 Polysulphide reductase, NrfD HL41_08650 PF00384 Molybdopterin oxidoreductase HL41_08650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HL41_08650 PF01568 Molydopterin dinucleotide binding domain HL41_08655 PF12800 4Fe-4S binding domain HL41_08655 PF13247 4Fe-4S dicluster domain HL41_08660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HL41_08665 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HL41_08670 PF12838 4Fe-4S dicluster domain HL41_08675 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HL41_08680 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HL41_08685 PF00146 NADH dehydrogenase HL41_08695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HL41_08700 PF00361 Proton-conducting membrane transporter HL41_08715 PF00361 Proton-conducting membrane transporter HL41_08730 PF00672 HAMP domain HL41_08730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HL41_08730 PF02743 Cache domain HL41_08735 PF00072 Response regulator receiver domain HL41_08735 PF00158 Sigma-54 interaction domain HL41_08735 PF02954 Bacterial regulatory protein, Fis family HL41_08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HL41_08740 PF00512 His Kinase A (phospho-acceptor) domain HL41_08750 PF07992 Pyridine nucleotide-disulphide oxidoreductase HL41_08755 PF02492 CobW/HypB/UreG, nucleotide-binding domain HL41_08760 PF02769 AIR synthase related protein, C-terminal domain HL41_08760 PF00586 AIR synthase related protein, N-terminal domain HL41_08765 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HL41_08770 PF07503 HypF finger HL41_08770 PF01300 Telomere recombination HL41_08770 PF00708 Acylphosphatase HL41_08770 PF17788 HypF Kae1-like domain HL41_08815 PF13419 Haloacid dehalogenase-like hydrolase HL41_08820 PF07690 Major Facilitator Superfamily HL41_08830 PF10397 Adenylosuccinate lyase C-terminus HL41_08830 PF00206 Lyase HL41_08835 PF00293 NUDIX domain HL41_08845 PF01250 Ribosomal protein S6 HL41_08850 PF01084 Ribosomal protein S18 HL41_08855 PF03948 Ribosomal protein L9, C-terminal domain HL41_08855 PF01281 Ribosomal protein L9, N-terminal domain HL41_08860 PF00772 DnaB-like helicase N terminal domain HL41_08860 PF03796 DnaB-like helicase C terminal domain HL41_08865 PF00582 Universal stress protein family HL41_08870 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HL41_08870 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HL41_08890 PF13361 UvrD-like helicase C-terminal domain HL41_08890 PF12705 PD-(D/E)XK nuclease superfamily HL41_08890 PF00580 UvrD/REP helicase N-terminal domain HL41_08900 PF00348 Polyprenyl synthetase HL41_08905 PF14306 PUA-like domain HL41_08905 PF01747 ATP-sulfurylase HL41_08915 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit HL41_08915 PF13187 4Fe-4S dicluster domain HL41_08920 PF00890 FAD binding domain HL41_08925 PF00890 FAD binding domain HL41_08925 PF14537 Cytochrome c3 HL41_08930 PF01593 Flavin containing amine oxidoreductase HL41_08955 PF03143 Elongation factor Tu C-terminal domain HL41_08955 PF00009 Elongation factor Tu GTP binding domain HL41_08955 PF03144 Elongation factor Tu domain 2 HL41_08960 PF00471 Ribosomal protein L33 HL41_08975 PF02357 Transcription termination factor nusG HL41_08975 PF00467 KOW motif HL41_08980 PF00298 Ribosomal protein L11, RNA binding domain HL41_08980 PF03946 Ribosomal protein L11, N-terminal domain HL41_08985 PF00687 Ribosomal protein L1p/L10e family HL41_08990 PF00466 Ribosomal protein L10 HL41_08995 PF00542 Ribosomal protein L7/L12 C-terminal domain HL41_08995 PF16320 Ribosomal protein L7/L12 dimerisation domain HL41_09000 PF00562 RNA polymerase Rpb2, domain 6 HL41_09000 PF04565 RNA polymerase Rpb2, domain 3 HL41_09000 PF04561 RNA polymerase Rpb2, domain 2 HL41_09000 PF04563 RNA polymerase beta subunit HL41_09000 PF04560 RNA polymerase Rpb2, domain 7 HL41_09000 PF10385 RNA polymerase beta subunit external 1 domain HL41_09005 PF04997 RNA polymerase Rpb1, domain 1 HL41_09005 PF00623 RNA polymerase Rpb1, domain 2 HL41_09005 PF04983 RNA polymerase Rpb1, domain 3 HL41_09005 PF05000 RNA polymerase Rpb1, domain 4 HL41_09005 PF04998 RNA polymerase Rpb1, domain 5 HL41_09010 PF00312 Ribosomal protein S15 HL41_09015 PF13180 PDZ domain HL41_09020 PF00708 Acylphosphatase HL41_09025 PF07687 Peptidase dimerisation domain HL41_09025 PF01546 Peptidase family M20/M25/M40 HL41_09030 PF00156 Phosphoribosyl transferase domain HL41_09035 PF00294 pfkB family carbohydrate kinase HL41_09035 PF01467 Cytidylyltransferase-like HL41_09045 PF03734 L,D-transpeptidase catalytic domain HL41_09050 PF02569 Pantoate-beta-alanine ligase HL41_09055 PF02261 Aspartate decarboxylase HL41_09060 PF04055 Radical SAM superfamily HL41_09060 PF18693 TRAM domain HL41_09060 PF00919 Uncharacterized protein family UPF0004 HL41_09065 PF07724 AAA domain (Cdc48 subfamily) HL41_09065 PF10431 C-terminal, D2-small domain, of ClpB protein HL41_09070 PF00227 Proteasome subunit HL41_09075 PF00107 Zinc-binding dehydrogenase HL41_09075 PF08240 Alcohol dehydrogenase GroES-like domain HL41_09090 PF01032 FecCD transport family HL41_09095 PF00005 ABC transporter HL41_09105 PF01078 Magnesium chelatase, subunit ChlI HL41_09105 PF17863 AAA lid domain HL41_09110 PF13519 von Willebrand factor type A domain HL41_09110 PF17863 AAA lid domain HL41_09110 PF01078 Magnesium chelatase, subunit ChlI HL41_09115 PF01139 tRNA-splicing ligase RtcB HL41_09135 PF01380 SIS domain HL41_09135 PF00571 CBS domain HL41_09155 PF00175 Oxidoreductase NAD-binding domain HL41_09155 PF00970 Oxidoreductase FAD-binding domain HL41_09155 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HL41_09165 PF01430 Hsp33 protein HL41_09175 PF00144 Beta-lactamase HL41_09180 PF14748 Pyrroline-5-carboxylate reductase dimerisation HL41_09180 PF03807 NADP oxidoreductase coenzyme F420-dependent HL41_09220 PF00374 Nickel-dependent hydrogenase