HL41_00050	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_00070	SM00382	ATPases associated with a variety of cellular activities
HL41_00150	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_00170	SM00825	Beta-ketoacyl synthase
HL41_00200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_00200	SM00387	Histidine kinase-like ATPases
HL41_00200	SM00388	His Kinase A (phosphoacceptor) domain
HL41_00280	SM00481	DNA polymerase alpha chain like domain
HL41_00330	SM00357	Cold shock protein domain
HL41_00340	SM00387	Histidine kinase-like ATPases
HL41_00340	SM00448	cheY-homologous receiver domain
HL41_00375	SM00841	Elongation factor P, C-terminal
HL41_00375	SM01185	HL41_00375
HL41_00390	SM00267	diguanylate cyclase
HL41_00405	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_00430	SM00878	Biotin carboxylase C-terminal domain
HL41_00455	SM00382	ATPases associated with a variety of cellular activities
HL41_00455	SM00962	SRP54-type protein, GTPase domain
HL41_00455	SM00963	SRP54-type protein, helical bundle domain
HL41_00475	SM01007	Class II Aldolase and Adducin N-terminal domain
HL41_00505	SM00382	ATPases associated with a variety of cellular activities
HL41_00525	SM00382	ATPases associated with a variety of cellular activities
HL41_00560	SM00382	ATPases associated with a variety of cellular activities
HL41_00685	SM01211	HL41_00685
HL41_00695	SM00411	bacterial (prokaryotic) histone like domain
HL41_00705	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
HL41_00705	SM01232	HL41_00705
HL41_00715	SM00834	Putative regulatory protein
HL41_00730	SM01400	HL41_00730
HL41_00820	SM00919	Malic enzyme, NAD binding domain
HL41_00820	SM01274	HL41_00820
HL41_00850	SM00986	Uracil DNA glycosylase superfamily
HL41_00850	SM00987	UreE urease accessory protein, C-terminal domain 
HL41_00910	SM00072	Guanylate kinase homologues.
HL41_00915	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HL41_00925	SM00481	DNA polymerase alpha chain like domain
HL41_00945	SM00382	ATPases associated with a variety of cellular activities
HL41_00970	SM00858	HL41_00970
HL41_01025	SM00028	Tetratricopeptide repeats
HL41_01030	SM00849	Metallo-beta-lactamase superfamily
HL41_01145	SM01131	HL41_01145
HL41_01185	SM00836	DALR anticodon binding domain
HL41_01185	SM01016	Arginyl tRNA synthetase N terminal dom
HL41_01215	SM00893	Electron transfer flavoprotein domain
HL41_01220	SM00893	Electron transfer flavoprotein domain
HL41_01245	SM00382	ATPases associated with a variety of cellular activities
HL41_01285	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_01285	SM00954	Region found in RelA / SpoT proteins
HL41_01295	SM01209	HL41_01295
HL41_01295	SM01210	HL41_01295
HL41_01300	SM01001	AIR carboxylase
HL41_01370	SM01209	HL41_01370
HL41_01385	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_01405	SM00493	HL41_01405
HL41_01475	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_01520	SM00322	K homology RNA-binding domain
HL41_01520	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_01590	SM01207	HL41_01590
HL41_01605	SM00977	TilS substrate C-terminal domain
HL41_01720	SM01323	HL41_01720
HL41_01815	SM00382	ATPases associated with a variety of cellular activities
HL41_01815	SM00448	cheY-homologous receiver domain
HL41_01830	SM01329	HL41_01830
HL41_01855	SM01228	HL41_01855
HL41_01890	SM00930	HL41_01890
HL41_01895	SM00382	ATPases associated with a variety of cellular activities
HL41_01900	SM00382	ATPases associated with a variety of cellular activities
HL41_01915	SM00487	DEAD-like helicases superfamily
HL41_01915	SM00490	helicase superfamily c-terminal domain
HL41_01935	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_01940	SM00851	MGS-like domain
HL41_01965	SM00849	Metallo-beta-lactamase superfamily
HL41_01970	SM00984	UDP binding domain
HL41_01980	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_01980	SM00481	DNA polymerase alpha chain like domain
HL41_01980	SM00483	DNA polymerase X family
HL41_02005	SM00387	Histidine kinase-like ATPases
HL41_02005	SM00433	TopoisomeraseII
HL41_02010	SM00480	DNA polymerase III beta subunit
HL41_02040	SM00830	Chorismate mutase type II
HL41_02050	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_02050	SM00322	K homology RNA-binding domain
HL41_02065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_02065	SM00387	Histidine kinase-like ATPases
HL41_02065	SM00388	His Kinase A (phosphoacceptor) domain
HL41_02130	SM01230	HL41_02130
HL41_02135	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HL41_02135	SM00382	ATPases associated with a variety of cellular activities
HL41_02145	SM00938	Nitrogen regulatory protein P-II
HL41_02210	SM00849	Metallo-beta-lactamase superfamily
HL41_02255	SM00382	ATPases associated with a variety of cellular activities
HL41_02270	SM00382	ATPases associated with a variety of cellular activities
HL41_02270	SM00760	Bacterial dnaA protein helix-turn-helix domain
HL41_02290	SM00382	ATPases associated with a variety of cellular activities
HL41_02290	SM00448	cheY-homologous receiver domain
HL41_02340	SM01004	Delta-aminolevulinic acid dehydratase
HL41_02350	SM00358	Double-stranded RNA binding motif
HL41_02350	SM00535	Ribonuclease III family
HL41_02365	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_02385	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_02390	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
HL41_02415	SM00052	Putative diguanylate phosphodiesterase
HL41_02415	SM00267	diguanylate cyclase
HL41_02430	SM00470	ParB-like nuclease domain
HL41_02440	SM00959	Rho termination factor, N-terminal domain
HL41_02500	SM00382	ATPases associated with a variety of cellular activities
HL41_02515	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HL41_02545	SM00507	HNH nucleases
HL41_02555	SM00138	Methyltransferase, chemotaxis proteins 
HL41_02560	SM00448	cheY-homologous receiver domain
HL41_02565	SM00448	cheY-homologous receiver domain
HL41_02585	SM00448	cheY-homologous receiver domain
HL41_02600	SM00962	SRP54-type protein, GTPase domain
HL41_02690	SM00859	Semialdehyde dehydrogenase, NAD binding domain
HL41_02710	SM00271	DnaJ molecular chaperone homology domain
HL41_02765	SM00382	ATPases associated with a variety of cellular activities
HL41_02790	SM00506	Appr-1"-p processing enzyme
HL41_02800	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_02815	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_02815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_02820	SM00849	Metallo-beta-lactamase superfamily
HL41_02825	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_02870	SM00382	ATPases associated with a variety of cellular activities
HL41_02885	SM00052	Putative diguanylate phosphodiesterase
HL41_02885	SM00267	diguanylate cyclase
HL41_02895	SM00849	Metallo-beta-lactamase superfamily
HL41_02930	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_02930	SM01091	Transporter associated domain
HL41_02950	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_02950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_02980	SM00260	Two component signalling adaptor domain
HL41_02985	SM00073	Histidine Phosphotransfer domain
HL41_02985	SM00260	Two component signalling adaptor domain
HL41_02985	SM00387	Histidine kinase-like ATPases
HL41_02985	SM00448	cheY-homologous receiver domain
HL41_02985	SM01231	HL41_02985
HL41_02995	SM00363	S4 RNA-binding domain
HL41_03025	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_03050	SM00382	ATPases associated with a variety of cellular activities
HL41_03080	SM00788	Adenylosuccinate synthetase
HL41_03085	SM00878	Biotin carboxylase C-terminal domain
HL41_03105	SM00851	MGS-like domain
HL41_03105	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HL41_03195	SM00382	ATPases associated with a variety of cellular activities
HL41_03225	SM00052	Putative diguanylate phosphodiesterase
HL41_03225	SM00091	PAS domain
HL41_03225	SM00267	diguanylate cyclase
HL41_03315	SM00028	Tetratricopeptide repeats
HL41_03335	SM01091	Transporter associated domain
HL41_03380	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_03380	SM00357	Cold shock protein domain
HL41_03380	SM00955	HL41_03380
HL41_03390	SM00845	GatB domain
HL41_03415	SM00834	Putative regulatory protein
HL41_03425	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HL41_03490	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_03510	SM00014	Acid phosphatase homologues
HL41_03520	SM00382	ATPases associated with a variety of cellular activities
HL41_03535	SM00834	Putative regulatory protein
HL41_03545	SM00562	HL41_03545
HL41_03560	SM00382	ATPases associated with a variety of cellular activities
HL41_03560	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_03590	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
HL41_03605	SM00507	HNH nucleases
HL41_03650	SM00834	Putative regulatory protein
HL41_03685	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_03685	SM00292	breast cancer carboxy-terminal domain
HL41_03685	SM00532	Ligase N family
HL41_03730	SM00487	DEAD-like helicases superfamily
HL41_03730	SM00490	helicase superfamily c-terminal domain
HL41_03735	SM00838	Elongation factor G C-terminus
HL41_03735	SM00889	Elongation factor G, domain IV
HL41_03740	SM00852	Probable molybdopterin binding domain
HL41_03795	SM00858	HL41_03795
HL41_03805	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_03825	SM00028	Tetratricopeptide repeats
HL41_03840	SM00487	DEAD-like helicases superfamily
HL41_03840	SM00490	helicase superfamily c-terminal domain
HL41_03915	SM00487	DEAD-like helicases superfamily
HL41_03915	SM00490	helicase superfamily c-terminal domain
HL41_03975	SM01230	HL41_03975
HL41_03985	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HL41_03985	SM00382	ATPases associated with a variety of cellular activities
HL41_04035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_04070	SM01234	HL41_04070
HL41_04080	SM01245	HL41_04080
HL41_04105	SM00470	ParB-like nuclease domain
HL41_04135	SM00852	Probable molybdopterin binding domain
HL41_04155	SM00267	diguanylate cyclase
HL41_04190	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_04205	SM00028	Tetratricopeptide repeats
HL41_04230	SM00463	Small MutS-related domain
HL41_04230	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HL41_04230	SM00534	ATPase domain of DNA mismatch repair MUTS family
HL41_04240	SM00382	ATPases associated with a variety of cellular activities
HL41_04250	SM00849	Metallo-beta-lactamase superfamily
HL41_04250	SM01027	Beta-Casp domain
HL41_04275	SM01329	HL41_04275
HL41_04430	SM00382	ATPases associated with a variety of cellular activities
HL41_04445	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_04470	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
HL41_04480	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_04480	SM00245	tail specific protease
HL41_04500	SM00382	ATPases associated with a variety of cellular activities
HL41_04515	SM00052	Putative diguanylate phosphodiesterase
HL41_04515	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HL41_04515	SM00091	PAS domain
HL41_04515	SM00267	diguanylate cyclase
HL41_04530	SM00382	ATPases associated with a variety of cellular activities
HL41_04570	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
HL41_04615	SM00267	diguanylate cyclase
HL41_04615	SM00448	cheY-homologous receiver domain
HL41_04630	SM00883	Chaperonin 10 Kd subunit
HL41_04640	SM00382	ATPases associated with a variety of cellular activities
HL41_04640	SM00464	Found in ATP-dependent protease La (LON)
HL41_04670	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_04680	SM00382	ATPases associated with a variety of cellular activities
HL41_04680	SM00448	cheY-homologous receiver domain
HL41_04685	SM00387	Histidine kinase-like ATPases
HL41_04685	SM00388	His Kinase A (phosphoacceptor) domain
HL41_04695	SM00487	DEAD-like helicases superfamily
HL41_04695	SM00490	helicase superfamily c-terminal domain
HL41_04715	SM00478	endonuclease III
HL41_04715	SM00525	HL41_04715
HL41_04725	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HL41_04740	SM00996	S-adenosyl-L-homocysteine hydrolase
HL41_04740	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
HL41_04765	SM00470	ParB-like nuclease domain
HL41_04770	SM00864	Tubulin/FtsZ family, GTPase domain
HL41_04770	SM00865	Tubulin/FtsZ family, C-terminal domain
HL41_04775	SM00842	Cell division protein FtsA
HL41_04850	SM00849	Metallo-beta-lactamase superfamily
HL41_04930	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_04955	SM00798	AICARFT/IMPCHase bienzyme
HL41_04995	SM00382	ATPases associated with a variety of cellular activities
HL41_05015	SM01409	HL41_05015
HL41_05020	SM00271	DnaJ molecular chaperone homology domain
HL41_05035	SM00382	ATPases associated with a variety of cellular activities
HL41_05050	SM00363	S4 RNA-binding domain
HL41_05060	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_05080	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_05125	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
HL41_05175	SM00853	MutL C terminal dimerisation domain
HL41_05175	SM01340	HL41_05175
HL41_05210	SM00955	HL41_05210
HL41_05240	SM00357	Cold shock protein domain
HL41_05240	SM00382	ATPases associated with a variety of cellular activities
HL41_05240	SM00959	Rho termination factor, N-terminal domain
HL41_05275	SM00382	ATPases associated with a variety of cellular activities
HL41_05275	SM00464	Found in ATP-dependent protease La (LON)
HL41_05280	SM00382	ATPases associated with a variety of cellular activities
HL41_05280	SM00994	ClpX C4-type zinc finger
HL41_05280	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_05305	SM00662	RNA polymerases D
HL41_05310	SM00363	S4 RNA-binding domain
HL41_05310	SM01390	HL41_05310
HL41_05395	SM01374	HL41_05395
HL41_05415	SM00322	K homology RNA-binding domain
HL41_05430	SM01382	HL41_05430
HL41_05430	SM01383	HL41_05430
HL41_05450	SM01403	HL41_05450
HL41_05460	SM00838	Elongation factor G C-terminus
HL41_05460	SM00889	Elongation factor G, domain IV
HL41_05475	SM00382	ATPases associated with a variety of cellular activities
HL41_05510	SM00271	DnaJ molecular chaperone homology domain
HL41_05580	SM00271	DnaJ molecular chaperone homology domain
HL41_05590	SM00917	LeuA allosteric (dimerisation) domain
HL41_05600	SM00840	HL41_05600
HL41_05620	SM00859	Semialdehyde dehydrogenase, NAD binding domain
HL41_05645	SM00244	prohibitin homologues
HL41_05665	SM00861	Transketolase, pyrimidine binding domain
HL41_05700	SM00382	ATPases associated with a variety of cellular activities
HL41_05715	SM00834	Putative regulatory protein
HL41_05720	SM00028	Tetratricopeptide repeats
HL41_05730	SM00028	Tetratricopeptide repeats
HL41_05740	SM00650	Ribosomal RNA adenine dimethylases
HL41_05755	SM00822	HL41_05755
HL41_05765	SM00028	Tetratricopeptide repeats
HL41_05765	SM00671	Sel1-like repeats.
HL41_05770	SM00917	LeuA allosteric (dimerisation) domain
HL41_05780	SM00450	Rhodanese Homology Domain
HL41_05785	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_05855	SM00903	Flavin reductase like domain
HL41_05860	SM00028	Tetratricopeptide repeats
HL41_05880	SM00363	S4 RNA-binding domain
HL41_05900	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
HL41_05920	SM00849	Metallo-beta-lactamase superfamily
HL41_05960	SM00873	B3/4 domain
HL41_05960	SM00874	tRNA synthetase B5 domain
HL41_05960	SM00896	Ferredoxin-fold anticodon binding domain
HL41_06030	SM00899	HL41_06030
HL41_06040	SM00267	diguanylate cyclase
HL41_06040	SM00899	HL41_06040
HL41_06045	SM00899	HL41_06045
HL41_06155	SM00881	CoA binding domain
HL41_06445	SM00028	Tetratricopeptide repeats
HL41_06475	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
HL41_06500	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HL41_06500	SM00534	ATPase domain of DNA mismatch repair MUTS family
HL41_06515	SM00267	diguanylate cyclase
HL41_06530	SM00382	ATPases associated with a variety of cellular activities
HL41_06580	SM00831	Cation transporter/ATPase, N-terminus
HL41_06585	SM00382	ATPases associated with a variety of cellular activities
HL41_06595	SM01192	HL41_06595
HL41_06595	SM01193	HL41_06595
HL41_06630	SM01078	HL41_06630
HL41_06665	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_06665	SM01240	HL41_06665
HL41_06670	SM00411	bacterial (prokaryotic) histone like domain
HL41_06680	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_06810	SM00382	ATPases associated with a variety of cellular activities
HL41_06810	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
HL41_06810	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
HL41_06810	SM00487	DEAD-like helicases superfamily
HL41_06810	SM00493	HL41_06810
HL41_06820	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_06890	SM00530	Helix-turn-helix XRE-family like proteins 
HL41_06895	SM00530	Helix-turn-helix XRE-family like proteins 
HL41_06940	SM00382	ATPases associated with a variety of cellular activities
HL41_07160	SM00268	Actin
HL41_07185	SM00434	DNA Topoisomerase IV
HL41_07210	SM00450	Rhodanese Homology Domain
HL41_07240	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_07255	SM00387	Histidine kinase-like ATPases
HL41_07255	SM00388	His Kinase A (phosphoacceptor) domain
HL41_07260	SM00382	ATPases associated with a variety of cellular activities
HL41_07260	SM00448	cheY-homologous receiver domain
HL41_07315	SM00881	CoA binding domain
HL41_07395	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_07415	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_07430	SM00478	endonuclease III
HL41_07475	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_07570	SM01204	HL41_07570
HL41_07605	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HL41_07685	SM00935	Outer membrane protein (OmpH-like)
HL41_07715	SM00487	DEAD-like helicases superfamily
HL41_07715	SM00490	helicase superfamily c-terminal domain
HL41_07770	SM00487	DEAD-like helicases superfamily
HL41_07770	SM00490	helicase superfamily c-terminal domain
HL41_07870	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_07925	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_07935	SM00382	ATPases associated with a variety of cellular activities
HL41_07980	SM01130	HL41_07980
HL41_07995	SM00226	Low molecular weight phosphatase family
HL41_08010	SM00052	Putative diguanylate phosphodiesterase
HL41_08020	SM00481	DNA polymerase alpha chain like domain
HL41_08035	SM00487	DEAD-like helicases superfamily
HL41_08035	SM00490	helicase superfamily c-terminal domain
HL41_08065	SM00937	HL41_08065
HL41_08080	SM00567	E-Z type HEAT repeats
HL41_08090	SM00028	Tetratricopeptide repeats
HL41_08100	SM00028	Tetratricopeptide repeats
HL41_08205	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_08215	SM00852	Probable molybdopterin binding domain
HL41_08225	SM00091	PAS domain
HL41_08225	SM00382	ATPases associated with a variety of cellular activities
HL41_08235	SM00091	PAS domain
HL41_08235	SM00387	Histidine kinase-like ATPases
HL41_08235	SM00388	His Kinase A (phosphoacceptor) domain
HL41_08240	SM00448	cheY-homologous receiver domain
HL41_08250	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HL41_08250	SM00866	HL41_08250
HL41_08320	SM00382	ATPases associated with a variety of cellular activities
HL41_08340	SM00448	cheY-homologous receiver domain
HL41_08340	SM00862	Transcriptional regulatory protein, C terminal
HL41_08345	SM00387	Histidine kinase-like ATPases
HL41_08345	SM00388	His Kinase A (phosphoacceptor) domain
HL41_08385	SM00382	ATPases associated with a variety of cellular activities
HL41_08385	SM00962	SRP54-type protein, GTPase domain
HL41_08385	SM00963	SRP54-type protein, helical bundle domain
HL41_08405	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
HL41_08440	SM00876	Biotin and Thiamin Synthesis associated domain
HL41_08480	SM00100	Cyclic nucleotide-monophosphate binding domain
HL41_08480	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_08570	SM00852	Probable molybdopterin binding domain
HL41_08590	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
HL41_08650	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
HL41_08730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_08730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_08735	SM00382	ATPases associated with a variety of cellular activities
HL41_08735	SM00448	cheY-homologous receiver domain
HL41_08740	SM00387	Histidine kinase-like ATPases
HL41_08740	SM00388	His Kinase A (phosphoacceptor) domain
HL41_08745	SM00062	Bacterial periplasmic substrate-binding proteins
HL41_08830	SM00998	Adenylosuccinate lyase C-terminus
HL41_08860	SM00382	ATPases associated with a variety of cellular activities
HL41_08975	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HL41_08980	SM00649	Ribosomal protein L11/L12
HL41_09005	SM00663	RNA polymerase I subunit A N-terminus
HL41_09010	SM01387	HL41_09010
HL41_09015	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_09060	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_09065	SM00382	ATPases associated with a variety of cellular activities
HL41_09065	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_09075	SM00829	Enoylreductase
HL41_09095	SM00382	ATPases associated with a variety of cellular activities
HL41_09105	SM00382	ATPases associated with a variety of cellular activities
HL41_09110	SM00327	von Willebrand factor (vWF) type A domain
HL41_09110	SM00382	ATPases associated with a variety of cellular activities
HL41_09135	SM00116	Domain in cystathionine beta-synthase and other proteins.
