locus-tag class description TOPB45_0002 PF02913 FAD linked oxidases, C-terminal domain TOPB45_0002 PF01565 FAD binding domain TOPB45_0003 PF01171 PP-loop family TOPB45_0004 PF01464 Transglycosylase SLT domain TOPB45_0005 PF00924 Mechanosensitive ion channel TOPB45_0005 PF05552 Conserved TM helix TOPB45_0010 PF06750 Bacterial Peptidase A24 N-terminal domain TOPB45_0010 PF01478 Type IV leader peptidase family TOPB45_0012 PF03853 YjeF-related protein N-terminus TOPB45_0012 PF01256 Carbohydrate kinase TOPB45_0013 PF01648 4'-phosphopantetheinyl transferase superfamily TOPB45_0014 PF02502 Ribose/Galactose Isomerase TOPB45_0015 PF00109 Beta-ketoacyl synthase, N-terminal domain TOPB45_0015 PF02801 Beta-ketoacyl synthase, C-terminal domain TOPB45_0016 PF00550 Phosphopantetheine attachment site TOPB45_0019 PF06969 HemN C-terminal domain TOPB45_0019 PF04055 Radical SAM superfamily TOPB45_0020 PF05175 Methyltransferase small domain TOPB45_0022 PF04055 Radical SAM superfamily TOPB45_0023 PF01842 ACT domain TOPB45_0023 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TOPB45_0023 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TOPB45_0024 PF00266 Aminotransferase class-V TOPB45_0025 PF03449 Transcription elongation factor, N-terminal TOPB45_0025 PF01272 Transcription elongation factor, GreA/GreB, C-term TOPB45_0026 PF02142 MGS-like domain TOPB45_0026 PF01808 AICARFT/IMPCHase bienzyme TOPB45_0027 PF02684 Lipid-A-disaccharide synthetase TOPB45_0030 PF00132 Bacterial transferase hexapeptide (six repeats) TOPB45_0030 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TOPB45_0031 PF07977 FabA-like domain TOPB45_0034 PF00005 ABC transporter TOPB45_0035 PF02405 Permease MlaE TOPB45_0036 PF00920 Dehydratase family TOPB45_0037 PF01106 NifU-like domain TOPB45_0038 PF01192 RNA polymerase Rpb6 TOPB45_0039 PF00226 DnaJ domain TOPB45_0039 PF01556 DnaJ C terminal domain TOPB45_0039 PF00684 DnaJ central domain TOPB45_0040 PF01967 MoaC family TOPB45_0042 PF17755 UvrA DNA-binding domain TOPB45_0042 PF00005 ABC transporter TOPB45_0042 PF17760 UvrA interaction domain TOPB45_0043 PF00571 CBS domain TOPB45_0043 PF00478 IMP dehydrogenase / GMP reductase domain TOPB45_0046 PF13288 DXP reductoisomerase C-terminal domain TOPB45_0046 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TOPB45_0046 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TOPB45_0047 PF17820 PDZ domain TOPB45_0047 PF02163 Peptidase family M50 TOPB45_0048 PF00814 Glycoprotease family TOPB45_0049 PF00528 Binding-protein-dependent transport system inner membrane component TOPB45_0050 PF12911 N-terminal TM domain of oligopeptide transport permease C TOPB45_0050 PF00528 Binding-protein-dependent transport system inner membrane component TOPB45_0054 PF00158 Sigma-54 interaction domain TOPB45_0054 PF02954 Bacterial regulatory protein, Fis family TOPB45_0054 PF13185 GAF domain TOPB45_0056 PF02954 Bacterial regulatory protein, Fis family TOPB45_0056 PF00072 Response regulator receiver domain TOPB45_0056 PF00158 Sigma-54 interaction domain TOPB45_0057 PF00460 Flagella basal body rod protein TOPB45_0058 PF00460 Flagella basal body rod protein TOPB45_0058 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOPB45_0059 PF02049 Flagellar hook-basal body complex protein FliE TOPB45_0060 PF01514 Secretory protein of YscJ/FliF family TOPB45_0060 PF08345 Flagellar M-ring protein C-terminal TOPB45_0061 PF14841 FliG middle domain TOPB45_0061 PF01706 FliG C-terminal domain TOPB45_0061 PF14842 FliG N-terminal domain TOPB45_0063 PF18269 T3SS EscN ATPase C-terminal domain TOPB45_0063 PF02874 ATP synthase alpha/beta family, beta-barrel domain TOPB45_0063 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOPB45_0066 PF00902 Sec-independent protein translocase protein (TatC) TOPB45_0069 PF00216 Bacterial DNA-binding protein TOPB45_0070 PF06827 Zinc finger found in FPG and IleRS TOPB45_0070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TOPB45_0070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TOPB45_0071 PF01594 AI-2E family transporter TOPB45_0074 PF08544 GHMP kinases C terminal TOPB45_0074 PF00288 GHMP kinases N terminal domain TOPB45_0075 PF14572 Phosphoribosyl synthetase-associated domain TOPB45_0075 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TOPB45_0076 PF01386 Ribosomal L25p family TOPB45_0076 PF14693 Ribosomal protein TL5, C-terminal domain TOPB45_0077 PF01195 Peptidyl-tRNA hydrolase TOPB45_0079 PF02540 NAD synthase TOPB45_0079 PF00117 Glutamine amidotransferase class-I TOPB45_0079 PF00958 GMP synthase C terminal domain TOPB45_0083 PF01783 Ribosomal L32p protein family TOPB45_0084 PF02504 Fatty acid synthesis protein TOPB45_0085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TOPB45_0085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TOPB45_0086 PF07559 Flagellar basal body protein FlaE TOPB45_0086 PF00460 Flagella basal body rod protein TOPB45_0086 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOPB45_0087 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOPB45_0087 PF00460 Flagella basal body rod protein TOPB45_0087 PF07559 Flagellar basal body protein FlaE TOPB45_0088 PF03963 Flagellar hook capping protein - N-terminal region TOPB45_0090 PF00361 Proton-conducting membrane transporter TOPB45_0091 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TOPB45_0091 PF00361 Proton-conducting membrane transporter TOPB45_0092 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TOPB45_0092 PF00361 Proton-conducting membrane transporter TOPB45_0093 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TOPB45_0094 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TOPB45_0095 PF12838 4Fe-4S dicluster domain TOPB45_0096 PF00146 NADH dehydrogenase TOPB45_0097 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TOPB45_0098 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TOPB45_0099 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TOPB45_0100 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TOPB45_0101 PF13247 4Fe-4S dicluster domain TOPB45_0101 PF12800 4Fe-4S binding domain TOPB45_0103 PF13380 CoA binding domain TOPB45_0104 PF00121 Triosephosphate isomerase TOPB45_0105 PF00162 Phosphoglycerate kinase TOPB45_0106 PF00885 6,7-dimethyl-8-ribityllumazine synthase TOPB45_0109 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TOPB45_0109 PF00391 PEP-utilising enzyme, mobile domain TOPB45_0109 PF02896 PEP-utilising enzyme, TIM barrel domain TOPB45_0110 PF01668 SmpB protein TOPB45_0111 PF13476 AAA domain TOPB45_0112 PF12804 MobA-like NTP transferase domain TOPB45_0113 PF01966 HD domain TOPB45_0113 PF00072 Response regulator receiver domain TOPB45_0117 PF02621 Menaquinone biosynthesis TOPB45_0118 PF01618 MotA/TolQ/ExbB proton channel family TOPB45_0119 PF00085 Thioredoxin TOPB45_0120 PF13525 Outer membrane lipoprotein TOPB45_0122 PF07517 SecA DEAD-like domain TOPB45_0122 PF01043 SecA preprotein cross-linking domain TOPB45_0122 PF02810 SEC-C motif TOPB45_0122 PF07516 SecA Wing and Scaffold domain TOPB45_0123 PF01142 tRNA pseudouridine synthase D (TruD) TOPB45_0124 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TOPB45_0126 PF00591 Glycosyl transferase family, a/b domain TOPB45_0126 PF02885 Glycosyl transferase family, helical bundle domain TOPB45_0127 PF01523 Putative modulator of DNA gyrase TOPB45_0128 PF00113 Enolase, C-terminal TIM barrel domain TOPB45_0128 PF03952 Enolase, N-terminal domain TOPB45_0129 PF00294 pfkB family carbohydrate kinase TOPB45_0129 PF01467 Cytidylyltransferase-like TOPB45_0130 PF00154 recA bacterial DNA recombination protein TOPB45_0132 PF12320 Type 5 capsule protein repressor C-terminal domain TOPB45_0132 PF00149 Calcineurin-like phosphoesterase TOPB45_0133 PF01113 Dihydrodipicolinate reductase, N-terminus TOPB45_0133 PF05173 Dihydrodipicolinate reductase, C-terminus TOPB45_0134 PF10609 NUBPL iron-transfer P-loop NTPase TOPB45_0137 PF01177 Asp/Glu/Hydantoin racemase TOPB45_0138 PF00202 Aminotransferase class-III TOPB45_0139 PF04055 Radical SAM superfamily TOPB45_0139 PF18693 TRAM domain TOPB45_0139 PF00919 Uncharacterized protein family UPF0004 TOPB45_0142 PF00753 Metallo-beta-lactamase superfamily TOPB45_0144 PF04493 Endonuclease V TOPB45_0145 PF02384 N-6 DNA Methylase TOPB45_0148 PF01420 Type I restriction modification DNA specificity domain TOPB45_0151 PF11867 Domain of unknown function (DUF3387) TOPB45_0151 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TOPB45_0151 PF18766 SWI2/SNF2 ATPase TOPB45_0152 PF01741 Large-conductance mechanosensitive channel, MscL TOPB45_0154 PF00258 Flavodoxin TOPB45_0154 PF01613 Flavin reductase like domain TOPB45_0156 PF09350 Domain of unknown function (DUF1992) TOPB45_0157 PF01872 RibD C-terminal domain TOPB45_0157 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TOPB45_0158 PF01121 Dephospho-CoA kinase TOPB45_0159 PF00849 RNA pseudouridylate synthase TOPB45_0159 PF01479 S4 domain TOPB45_0161 PF08525 Opacity-associated protein A N-terminal motif TOPB45_0161 PF01476 LysM domain TOPB45_0161 PF01551 Peptidase family M23 TOPB45_0162 PF00312 Ribosomal protein S15 TOPB45_0163 PF04997 RNA polymerase Rpb1, domain 1 TOPB45_0163 PF04983 RNA polymerase Rpb1, domain 3 TOPB45_0163 PF04998 RNA polymerase Rpb1, domain 5 TOPB45_0163 PF05000 RNA polymerase Rpb1, domain 4 TOPB45_0163 PF00623 RNA polymerase Rpb1, domain 2 TOPB45_0164 PF10385 RNA polymerase beta subunit external 1 domain TOPB45_0164 PF00562 RNA polymerase Rpb2, domain 6 TOPB45_0164 PF04565 RNA polymerase Rpb2, domain 3 TOPB45_0164 PF04561 RNA polymerase Rpb2, domain 2 TOPB45_0164 PF04563 RNA polymerase beta subunit TOPB45_0164 PF04560 RNA polymerase Rpb2, domain 7 TOPB45_0165 PF00542 Ribosomal protein L7/L12 C-terminal domain TOPB45_0165 PF16320 Ribosomal protein L7/L12 dimerisation domain TOPB45_0166 PF00466 Ribosomal protein L10 TOPB45_0167 PF00687 Ribosomal protein L1p/L10e family TOPB45_0168 PF00298 Ribosomal protein L11, RNA binding domain TOPB45_0168 PF03946 Ribosomal protein L11, N-terminal domain TOPB45_0169 PF02357 Transcription termination factor nusG TOPB45_0169 PF00467 KOW motif TOPB45_0170 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TOPB45_0171 PF00471 Ribosomal protein L33 TOPB45_0172 PF03143 Elongation factor Tu C-terminal domain TOPB45_0172 PF03144 Elongation factor Tu domain 2 TOPB45_0172 PF00009 Elongation factor Tu GTP binding domain TOPB45_0174 PF01593 Flavin containing amine oxidoreductase TOPB45_0175 PF14537 Cytochrome c3 TOPB45_0175 PF00890 FAD binding domain TOPB45_0176 PF00890 FAD binding domain TOPB45_0177 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit TOPB45_0177 PF13187 4Fe-4S dicluster domain TOPB45_0179 PF01747 ATP-sulfurylase TOPB45_0179 PF14306 PUA-like domain TOPB45_0180 PF00348 Polyprenyl synthetase TOPB45_0182 PF00580 UvrD/REP helicase N-terminal domain TOPB45_0182 PF13361 UvrD-like helicase C-terminal domain TOPB45_0183 PF04452 RNA methyltransferase TOPB45_0186 PF00582 Universal stress protein family TOPB45_0187 PF03796 DnaB-like helicase C terminal domain TOPB45_0187 PF00772 DnaB-like helicase N terminal domain TOPB45_0188 PF01281 Ribosomal protein L9, N-terminal domain TOPB45_0188 PF03948 Ribosomal protein L9, C-terminal domain TOPB45_0189 PF01084 Ribosomal protein S18 TOPB45_0190 PF01250 Ribosomal protein S6 TOPB45_0191 PF00293 NUDIX domain TOPB45_0192 PF00206 Lyase TOPB45_0192 PF10397 Adenylosuccinate lyase C-terminus TOPB45_0193 PF00877 NlpC/P60 family TOPB45_0193 PF01476 LysM domain TOPB45_0194 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0194 PF07694 5TMR of 5TMR-LYT TOPB45_0196 PF01380 SIS domain TOPB45_0196 PF00571 CBS domain TOPB45_0197 PF02223 Thymidylate kinase TOPB45_0200 PF01139 tRNA-splicing ligase RtcB TOPB45_0201 PF00227 Proteasome subunit TOPB45_0202 PF07724 AAA domain (Cdc48 subfamily) TOPB45_0202 PF10431 C-terminal, D2-small domain, of ClpB protein TOPB45_0203 PF00919 Uncharacterized protein family UPF0004 TOPB45_0203 PF04055 Radical SAM superfamily TOPB45_0203 PF18693 TRAM domain TOPB45_0204 PF02261 Aspartate decarboxylase TOPB45_0205 PF02569 Pantoate-beta-alanine ligase TOPB45_0207 PF01894 Uncharacterised protein family UPF0047 TOPB45_0209 PF08502 LeuA allosteric (dimerisation) domain TOPB45_0209 PF00682 HMGL-like TOPB45_0210 PF18152 DAHP synthase ferredoxin-like domain TOPB45_0210 PF00793 DAHP synthetase I family TOPB45_0214 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TOPB45_0214 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TOPB45_0214 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TOPB45_0214 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TOPB45_0217 PF00056 lactate/malate dehydrogenase, NAD binding domain TOPB45_0217 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TOPB45_0218 PF01119 DNA mismatch repair protein, C-terminal domain TOPB45_0218 PF08676 MutL C terminal dimerisation domain TOPB45_0221 PF01040 UbiA prenyltransferase family TOPB45_0222 PF13614 AAA domain TOPB45_0225 PF00440 Bacterial regulatory proteins, tetR family TOPB45_0226 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TOPB45_0227 PF00873 AcrB/AcrD/AcrF family TOPB45_0228 PF02321 Outer membrane efflux protein TOPB45_0230 PF02675 S-adenosylmethionine decarboxylase TOPB45_0231 PF17284 Spermidine synthase tetramerisation domain TOPB45_0234 PF05681 Fumarate hydratase (Fumerase) TOPB45_0235 PF00933 Glycosyl hydrolase family 3 N terminal domain TOPB45_0236 PF00266 Aminotransferase class-V TOPB45_0237 PF17915 Reverse gyrase zinc finger TOPB45_0237 PF01751 Toprim domain TOPB45_0237 PF00270 DEAD/DEAH box helicase TOPB45_0237 PF01131 DNA topoisomerase TOPB45_0238 PF01578 Cytochrome C assembly protein TOPB45_0239 PF00905 Penicillin binding protein transpeptidase domain TOPB45_0239 PF00912 Transglycosylase TOPB45_0240 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0240 PF08448 PAS fold TOPB45_0240 PF00563 EAL domain TOPB45_0241 PF02080 TrkA-C domain TOPB45_0241 PF02254 TrkA-N domain TOPB45_0241 PF00999 Sodium/hydrogen exchanger family TOPB45_0242 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TOPB45_0242 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TOPB45_0243 PF02542 YgbB family TOPB45_0244 PF08240 Alcohol dehydrogenase GroES-like domain TOPB45_0244 PF00107 Zinc-binding dehydrogenase TOPB45_0245 PF00436 Single-strand binding protein family TOPB45_0246 PF01488 Shikimate / quinate 5-dehydrogenase TOPB45_0246 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TOPB45_0246 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TOPB45_0247 PF01578 Cytochrome C assembly protein TOPB45_0249 PF04055 Radical SAM superfamily TOPB45_0252 PF00472 RF-1 domain TOPB45_0252 PF03462 PCRF domain TOPB45_0253 PF01197 Ribosomal protein L31 TOPB45_0254 PF12804 MobA-like NTP transferase domain TOPB45_0254 PF00132 Bacterial transferase hexapeptide (six repeats) TOPB45_0255 PF05698 Bacterial trigger factor protein (TF) C-terminus TOPB45_0257 PF13180 PDZ domain TOPB45_0257 PF17820 PDZ domain TOPB45_0259 PF02565 Recombination protein O C terminal TOPB45_0259 PF11967 Recombination protein O N terminal TOPB45_0260 PF03641 Possible lysine decarboxylase TOPB45_0261 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TOPB45_0261 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TOPB45_0263 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TOPB45_0264 PF03734 L,D-transpeptidase catalytic domain TOPB45_0264 PF17969 L,D-transpeptidase C-terminal domain TOPB45_0265 PF00291 Pyridoxal-phosphate dependent enzyme TOPB45_0268 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TOPB45_0269 PF04055 Radical SAM superfamily TOPB45_0270 PF01979 Amidohydrolase family TOPB45_0272 PF01209 ubiE/COQ5 methyltransferase family TOPB45_0273 PF00072 Response regulator receiver domain TOPB45_0273 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0275 PF16123 Hydroxyacylglutathione hydrolase C-terminus TOPB45_0275 PF00753 Metallo-beta-lactamase superfamily TOPB45_0276 PF01513 ATP-NAD kinase TOPB45_0279 PF00343 Carbohydrate phosphorylase TOPB45_0279 PF11897 Protein of unknown function (DUF3417) TOPB45_0281 PF00534 Glycosyl transferases group 1 TOPB45_0281 PF13439 Glycosyltransferase Family 4 TOPB45_0283 PF06071 Protein of unknown function (DUF933) TOPB45_0283 PF01926 50S ribosome-binding GTPase TOPB45_0285 PF00156 Phosphoribosyl transferase domain TOPB45_0286 PF01964 Radical SAM ThiC family TOPB45_0288 PF07690 Major Facilitator Superfamily TOPB45_0294 PF00342 Phosphoglucose isomerase TOPB45_0295 PF00490 Delta-aminolevulinic acid dehydratase TOPB45_0296 PF05036 Sporulation related domain TOPB45_0296 PF03330 Lytic transglycolase TOPB45_0297 PF14622 Ribonuclease-III-like TOPB45_0297 PF00035 Double-stranded RNA binding motif TOPB45_0298 PF01926 50S ribosome-binding GTPase TOPB45_0298 PF07650 KH domain TOPB45_0299 PF04316 Anti-sigma-28 factor, FlgM TOPB45_0300 PF00294 pfkB family carbohydrate kinase TOPB45_0300 PF01467 Cytidylyltransferase-like TOPB45_0301 PF00156 Phosphoribosyl transferase domain TOPB45_0302 PF07687 Peptidase dimerisation domain TOPB45_0302 PF01546 Peptidase family M20/M25/M40 TOPB45_0303 PF00708 Acylphosphatase TOPB45_0307 PF02374 Anion-transporting ATPase TOPB45_0307 PF17886 HSP20-like domain found in ArsA TOPB45_0308 PF01189 16S rRNA methyltransferase RsmB/F TOPB45_0308 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TOPB45_0308 PF01029 NusB family TOPB45_0309 PF17757 UvrB interaction domain TOPB45_0309 PF00271 Helicase conserved C-terminal domain TOPB45_0309 PF12344 Ultra-violet resistance protein B TOPB45_0309 PF02151 UvrB/uvrC motif TOPB45_0309 PF04851 Type III restriction enzyme, res subunit TOPB45_0312 PF04055 Radical SAM superfamily TOPB45_0313 PF02581 Thiamine monophosphate synthase TOPB45_0317 PF12706 Beta-lactamase superfamily domain TOPB45_0319 PF00072 Response regulator receiver domain TOPB45_0319 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0321 PF00483 Nucleotidyl transferase TOPB45_0321 PF01050 Mannose-6-phosphate isomerase TOPB45_0336 PF01943 Polysaccharide biosynthesis protein TOPB45_0338 PF03275 UDP-galactopyranose mutase TOPB45_0341 PF00535 Glycosyl transferase family 2 TOPB45_0343 PF00483 Nucleotidyl transferase TOPB45_0346 PF13439 Glycosyltransferase Family 4 TOPB45_0346 PF00534 Glycosyl transferases group 1 TOPB45_0350 PF13439 Glycosyltransferase Family 4 TOPB45_0350 PF00534 Glycosyl transferases group 1 TOPB45_0351 PF00483 Nucleotidyl transferase TOPB45_0352 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TOPB45_0354 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TOPB45_0355 PF16363 GDP-mannose 4,6 dehydratase TOPB45_0356 PF04321 RmlD substrate binding domain TOPB45_0361 PF02397 Bacterial sugar transferase TOPB45_0362 PF07992 Pyridine nucleotide-disulphide oxidoreductase TOPB45_0365 PF10531 SLBB domain TOPB45_0365 PF02563 Polysaccharide biosynthesis/export protein TOPB45_0369 PF02152 Dihydroneopterin aldolase TOPB45_0369 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TOPB45_0370 PF00155 Aminotransferase class I and II TOPB45_0371 PF01658 Myo-inositol-1-phosphate synthase TOPB45_0372 PF00521 DNA gyrase/topoisomerase IV, subunit A TOPB45_0372 PF03989 DNA gyrase C-terminal domain, beta-propeller TOPB45_0374 PF00591 Glycosyl transferase family, a/b domain TOPB45_0374 PF02885 Glycosyl transferase family, helical bundle domain TOPB45_0374 PF00117 Glutamine amidotransferase class-I TOPB45_0376 PF03129 Anticodon binding domain TOPB45_0376 PF13393 Histidyl-tRNA synthetase TOPB45_0377 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TOPB45_0377 PF07992 Pyridine nucleotide-disulphide oxidoreductase TOPB45_0378 PF02421 Ferrous iron transport protein B TOPB45_0378 PF07670 Nucleoside recognition TOPB45_0378 PF07664 Ferrous iron transport protein B C terminus TOPB45_0379 PF00557 Metallopeptidase family M24 TOPB45_0379 PF01321 Creatinase/Prolidase N-terminal domain TOPB45_0380 PF00148 Nitrogenase component 1 type Oxidoreductase TOPB45_0380 PF08369 Proto-chlorophyllide reductase 57 kD subunit TOPB45_0383 PF01814 Hemerythrin HHE cation binding domain TOPB45_0383 PF04405 Domain of Unknown function (DUF542) TOPB45_0387 PF04551 GcpE protein TOPB45_0388 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TOPB45_0389 PF00593 TonB dependent receptor TOPB45_0389 PF07715 TonB-dependent Receptor Plug Domain TOPB45_0392 PF07992 Pyridine nucleotide-disulphide oxidoreductase TOPB45_0393 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TOPB45_0393 PF04060 Putative Fe-S cluster TOPB45_0394 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit TOPB45_0394 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain TOPB45_0395 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TOPB45_0396 PF02574 Homocysteine S-methyltransferase TOPB45_0396 PF02219 Methylenetetrahydrofolate reductase TOPB45_0398 PF03063 Prismane/CO dehydrogenase family TOPB45_0399 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TOPB45_0399 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TOPB45_0400 PF01268 Formate--tetrahydrofolate ligase TOPB45_0401 PF01370 NAD dependent epimerase/dehydratase family TOPB45_0402 PF02272 DHHA1 domain TOPB45_0402 PF01368 DHH family TOPB45_0402 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TOPB45_0402 PF17768 RecJ OB domain TOPB45_0403 PF13286 Phosphohydrolase-associated domain TOPB45_0403 PF01966 HD domain TOPB45_0406 PF00582 Universal stress protein family TOPB45_0407 PF00857 Isochorismatase family TOPB45_0408 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TOPB45_0408 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TOPB45_0408 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TOPB45_0409 PF00675 Insulinase (Peptidase family M16) TOPB45_0409 PF05193 Peptidase M16 inactive domain TOPB45_0410 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TOPB45_0411 PF02685 Glucokinase TOPB45_0413 PF00691 OmpA family TOPB45_0416 PF00448 SRP54-type protein, GTPase domain TOPB45_0416 PF02881 SRP54-type protein, helical bundle domain TOPB45_0418 PF00708 Acylphosphatase TOPB45_0418 PF07503 HypF finger TOPB45_0418 PF01300 Telomere recombination TOPB45_0418 PF17788 HypF Kae1-like domain TOPB45_0419 PF00149 Calcineurin-like phosphoesterase TOPB45_0420 PF01557 Fumarylacetoacetate (FAA) hydrolase family TOPB45_0421 PF06463 Molybdenum Cofactor Synthesis C TOPB45_0421 PF04055 Radical SAM superfamily TOPB45_0422 PF02441 Flavoprotein TOPB45_0422 PF04127 DNA / pantothenate metabolism flavoprotein TOPB45_0424 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0424 PF17158 Membrane-associated sensor, integral membrane domain TOPB45_0425 PF00171 Aldehyde dehydrogenase family TOPB45_0426 PF01467 Cytidylyltransferase-like TOPB45_0428 PF11741 AMIN domain TOPB45_0428 PF01520 N-acetylmuramoyl-L-alanine amidase TOPB45_0429 PF07075 Protein of unknown function (DUF1343) TOPB45_0431 PF01018 GTP1/OBG TOPB45_0431 PF01926 50S ribosome-binding GTPase TOPB45_0432 PF01472 PUA domain TOPB45_0432 PF00696 Amino acid kinase family TOPB45_0433 PF07733 Bacterial DNA polymerase III alpha NTPase domain TOPB45_0433 PF02811 PHP domain TOPB45_0433 PF14579 Helix-hairpin-helix motif TOPB45_0433 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TOPB45_0435 PF03968 OstA-like protein TOPB45_0435 PF04453 LPS transport system D TOPB45_0436 PF02590 Predicted SPOUT methyltransferase TOPB45_0437 PF00850 Histone deacetylase domain TOPB45_0438 PF13533 Biotin-lipoyl like TOPB45_0439 PF00005 ABC transporter TOPB45_0440 PF00005 ABC transporter TOPB45_0445 PF01435 Peptidase family M48 TOPB45_0445 PF07720 Tetratricopeptide repeat TOPB45_0449 PF00291 Pyridoxal-phosphate dependent enzyme TOPB45_0450 PF00290 Tryptophan synthase alpha chain TOPB45_0451 PF01761 3-dehydroquinate synthase TOPB45_0452 PF01678 Diaminopimelate epimerase TOPB45_0453 PF00701 Dihydrodipicolinate synthetase family TOPB45_0454 PF00465 Iron-containing alcohol dehydrogenase TOPB45_0458 PF00486 Transcriptional regulatory protein, C terminal TOPB45_0458 PF00072 Response regulator receiver domain TOPB45_0459 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_0459 PF00672 HAMP domain TOPB45_0459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_0459 PF18698 Histidine kinase sensor domain TOPB45_0459 PF00989 PAS fold TOPB45_0460 PF03707 Bacterial signalling protein N terminal repeat TOPB45_0460 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0460 PF00563 EAL domain TOPB45_0461 PF02649 Type I GTP cyclohydrolase folE2 TOPB45_0463 PF02492 CobW/HypB/UreG, nucleotide-binding domain TOPB45_0464 PF00586 AIR synthase related protein, N-terminal domain TOPB45_0464 PF02769 AIR synthase related protein, C-terminal domain TOPB45_0465 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TOPB45_0466 PF01750 Hydrogenase maturation protease TOPB45_0467 PF00582 Universal stress protein family TOPB45_0470 PF03099 Biotin/lipoate A/B protein ligase family TOPB45_0470 PF08279 HTH domain TOPB45_0470 PF02237 Biotin protein ligase C terminal domain TOPB45_0471 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0472 PF14437 MafB19-like deaminase TOPB45_0473 PF02401 LytB protein TOPB45_0474 PF04002 RadC-like JAB domain TOPB45_0477 PF00793 DAHP synthetase I family TOPB45_0482 PF00534 Glycosyl transferases group 1 TOPB45_0484 PF00982 Glycosyltransferase family 20 TOPB45_0486 PF00764 Arginosuccinate synthase TOPB45_0487 PF00923 Transaldolase/Fructose-6-phosphate aldolase TOPB45_0488 PF01569 PAP2 superfamily TOPB45_0490 PF18073 Rubredoxin metal binding domain TOPB45_0494 PF02146 Sir2 family TOPB45_0495 PF03091 CutA1 divalent ion tolerance protein TOPB45_0496 PF00994 Probable molybdopterin binding domain TOPB45_0496 PF03454 MoeA C-terminal region (domain IV) TOPB45_0496 PF03453 MoeA N-terminal region (domain I and II) TOPB45_0498 PF13247 4Fe-4S dicluster domain TOPB45_0500 PF12728 Helix-turn-helix domain TOPB45_0500 PF12727 PBP superfamily domain TOPB45_0501 PF03631 Virulence factor BrkB TOPB45_0503 PF01063 Amino-transferase class IV TOPB45_0506 PF04055 Radical SAM superfamily TOPB45_0507 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 TOPB45_0507 PF00535 Glycosyl transferase family 2 TOPB45_0510 PF00534 Glycosyl transferases group 1 TOPB45_0510 PF13439 Glycosyltransferase Family 4 TOPB45_0512 PF00534 Glycosyl transferases group 1 TOPB45_0512 PF13439 Glycosyltransferase Family 4 TOPB45_0515 PF11146 Protein of unknown function (DUF2905) TOPB45_0517 PF04055 Radical SAM superfamily TOPB45_0517 PF00919 Uncharacterized protein family UPF0004 TOPB45_0518 PF01066 CDP-alcohol phosphatidyltransferase TOPB45_0519 PF02677 Epoxyqueuosine reductase QueH TOPB45_0522 PF01475 Ferric uptake regulator family TOPB45_0524 PF00156 Phosphoribosyl transferase domain TOPB45_0525 PF12849 PBP superfamily domain TOPB45_0526 PF00528 Binding-protein-dependent transport system inner membrane component TOPB45_0527 PF00528 Binding-protein-dependent transport system inner membrane component TOPB45_0528 PF00005 ABC transporter TOPB45_0529 PF01960 ArgJ family TOPB45_0530 PF01975 Survival protein SurE TOPB45_0532 PF01687 Riboflavin kinase TOPB45_0532 PF06574 FAD synthetase TOPB45_0533 PF00117 Glutamine amidotransferase class-I TOPB45_0533 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TOPB45_0536 PF00258 Flavodoxin TOPB45_0536 PF00753 Metallo-beta-lactamase superfamily TOPB45_0538 PF00301 Rubredoxin TOPB45_0539 PF00301 Rubredoxin TOPB45_0540 PF00301 Rubredoxin TOPB45_0541 PF01880 Desulfoferrodoxin TOPB45_0541 PF06397 Desulfoferrodoxin, N-terminal domain TOPB45_0543 PF00216 Bacterial DNA-binding protein TOPB45_0544 PF03147 Ferredoxin-fold anticodon binding domain TOPB45_0544 PF01588 Putative tRNA binding domain TOPB45_0544 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TOPB45_0544 PF03484 tRNA synthetase B5 domain TOPB45_0544 PF03483 B3/4 domain TOPB45_0545 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TOPB45_0545 PF01409 tRNA synthetases class II core domain (F) TOPB45_0546 PF00453 Ribosomal protein L20 TOPB45_0547 PF01632 Ribosomal protein L35 TOPB45_0548 PF02548 Ketopantoate hydroxymethyltransferase TOPB45_0549 PF05491 RuvB C-terminal winged helix domain TOPB45_0549 PF17864 RuvB AAA lid domain TOPB45_0549 PF05496 Holliday junction DNA helicase RuvB P-loop domain TOPB45_0550 PF00672 HAMP domain TOPB45_0550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TOPB45_0550 PF12729 Four helix bundle sensory module for signal transduction TOPB45_0554 PF01926 50S ribosome-binding GTPase TOPB45_0556 PF00578 AhpC/TSA family TOPB45_0556 PF10417 C-terminal domain of 1-Cys peroxiredoxin TOPB45_0558 PF00294 pfkB family carbohydrate kinase TOPB45_0559 PF01523 Putative modulator of DNA gyrase TOPB45_0560 PF00156 Phosphoribosyl transferase domain TOPB45_0561 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TOPB45_0563 PF04073 Aminoacyl-tRNA editing domain TOPB45_0563 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TOPB45_0563 PF03129 Anticodon binding domain TOPB45_0564 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TOPB45_0564 PF00132 Bacterial transferase hexapeptide (six repeats) TOPB45_0567 PF00350 Dynamin family TOPB45_0569 PF01814 Hemerythrin HHE cation binding domain TOPB45_0574 PF07690 Major Facilitator Superfamily TOPB45_0576 PF07499 RuvA, C-terminal domain TOPB45_0576 PF01330 RuvA N terminal domain TOPB45_0577 PF02075 Crossover junction endodeoxyribonuclease RuvC TOPB45_0578 PF01709 Transcriptional regulator TOPB45_0580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TOPB45_0580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TOPB45_0584 PF08029 HisG, C-terminal domain TOPB45_0584 PF01634 ATP phosphoribosyltransferase TOPB45_0585 PF01502 Phosphoribosyl-AMP cyclohydrolase TOPB45_0586 PF00218 Indole-3-glycerol phosphate synthase TOPB45_0587 PF00468 Ribosomal protein L34 TOPB45_0588 PF00825 Ribonuclease P TOPB45_0589 PF01809 Putative membrane protein insertion efficiency factor TOPB45_0590 PF02096 60Kd inner membrane protein TOPB45_0590 PF14849 YidC periplasmic domain TOPB45_0592 PF12631 MnmE helical domain TOPB45_0592 PF10396 GTP-binding protein TrmE N-terminus TOPB45_0592 PF01926 50S ribosome-binding GTPase TOPB45_0593 PF01968 Hydantoinase/oxoprolinase TOPB45_0593 PF05378 Hydantoinase/oxoprolinase N-terminal region TOPB45_0595 PF08543 Phosphomethylpyrimidine kinase TOPB45_0596 PF02686 Glu-tRNAGln amidotransferase C subunit TOPB45_0597 PF01425 Amidase TOPB45_0598 PF02195 ParB-like nuclease domain TOPB45_0598 PF17762 HTH domain found in ParB protein TOPB45_0599 PF00862 Sucrose synthase TOPB45_0599 PF00534 Glycosyl transferases group 1 TOPB45_0602 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TOPB45_0602 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TOPB45_0603 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TOPB45_0605 PF02834 LigT like Phosphoesterase TOPB45_0606 PF00994 Probable molybdopterin binding domain TOPB45_0606 PF02464 Competence-damaged protein TOPB45_0606 PF18146 Damage-inducible protein CinA KH domain TOPB45_0607 PF04608 Phosphatidylglycerophosphatase A TOPB45_0609 PF01370 NAD dependent epimerase/dehydratase family TOPB45_0609 PF08338 Domain of unknown function (DUF1731) TOPB45_0610 PF07885 Ion channel TOPB45_0610 PF02254 TrkA-N domain TOPB45_0611 PF00582 Universal stress protein family TOPB45_0612 PF03600 Citrate transporter TOPB45_0613 PF00535 Glycosyl transferase family 2 TOPB45_0614 PF17191 RecG wedge domain TOPB45_0614 PF00270 DEAD/DEAH box helicase TOPB45_0614 PF00271 Helicase conserved C-terminal domain TOPB45_0616 PF01790 Prolipoprotein diacylglyceryl transferase TOPB45_0617 PF00633 Helix-hairpin-helix motif TOPB45_0617 PF00730 HhH-GPD superfamily base excision DNA repair protein TOPB45_0619 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TOPB45_0619 PF01411 tRNA synthetases class II (A) TOPB45_0619 PF02272 DHHA1 domain TOPB45_0620 PF00438 S-adenosylmethionine synthetase, N-terminal domain TOPB45_0620 PF02772 S-adenosylmethionine synthetase, central domain TOPB45_0620 PF02773 S-adenosylmethionine synthetase, C-terminal domain TOPB45_0621 PF05221 S-adenosyl-L-homocysteine hydrolase TOPB45_0621 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TOPB45_0622 PF00677 Lumazine binding domain TOPB45_0624 PF03807 NADP oxidoreductase coenzyme F420-dependent TOPB45_0624 PF14748 Pyrroline-5-carboxylate reductase dimerisation TOPB45_0625 PF01384 Phosphate transporter family TOPB45_0628 PF00459 Inositol monophosphatase family TOPB45_0629 PF00072 Response regulator receiver domain TOPB45_0629 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_0630 PF00575 S1 RNA binding domain TOPB45_0630 PF00773 RNB domain TOPB45_0631 PF00977 Histidine biosynthesis protein TOPB45_0633 PF13607 Succinyl-CoA ligase like flavodoxin domain TOPB45_0633 PF00583 Acetyltransferase (GNAT) family TOPB45_0633 PF13380 CoA binding domain TOPB45_0635 PF01979 Amidohydrolase family TOPB45_0636 PF00501 AMP-binding enzyme TOPB45_0636 PF13193 AMP-binding enzyme C-terminal domain TOPB45_0636 PF16177 Acetyl-coenzyme A synthetase N-terminus TOPB45_0637 PF00465 Iron-containing alcohol dehydrogenase TOPB45_0638 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TOPB45_0638 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TOPB45_0639 PF01872 RibD C-terminal domain TOPB45_0642 PF00440 Bacterial regulatory proteins, tetR family TOPB45_0645 PF00501 AMP-binding enzyme TOPB45_0645 PF14535 AMP-binding enzyme C-terminal domain TOPB45_0647 PF14535 AMP-binding enzyme C-terminal domain TOPB45_0647 PF00501 AMP-binding enzyme TOPB45_0649 PF02652 L-lactate permease TOPB45_0654 PF02618 YceG-like family TOPB45_0655 PF00398 Ribosomal RNA adenine dimethylase TOPB45_0656 PF18693 TRAM domain TOPB45_0656 PF04055 Radical SAM superfamily TOPB45_0656 PF00919 Uncharacterized protein family UPF0004 TOPB45_0657 PF00083 Sugar (and other) transporter TOPB45_0660 PF16363 GDP-mannose 4,6 dehydratase TOPB45_0662 PF00202 Aminotransferase class-III TOPB45_0663 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TOPB45_0663 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TOPB45_0665 PF00158 Sigma-54 interaction domain TOPB45_0665 PF00072 Response regulator receiver domain TOPB45_0665 PF02954 Bacterial regulatory protein, Fis family TOPB45_0666 PF13426 PAS domain TOPB45_0666 PF13188 PAS domain TOPB45_0666 PF00989 PAS fold TOPB45_0666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_0666 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_0667 PF01569 PAP2 superfamily TOPB45_0669 PF02580 D-Tyr-tRNA(Tyr) deacylase TOPB45_0674 PF00698 Acyl transferase domain TOPB45_0675 PF01597 Glycine cleavage H-protein TOPB45_0676 PF01312 FlhB HrpN YscU SpaS Family TOPB45_0677 PF01950 Fructose-1,6-bisphosphatase TOPB45_0679 PF02472 Biopolymer transport protein ExbD/TolR TOPB45_0684 PF03548 Outer membrane lipoprotein carrier protein LolA TOPB45_0685 PF17854 FtsK alpha domain TOPB45_0685 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TOPB45_0685 PF01580 FtsK/SpoIIIE family TOPB45_0685 PF09397 Ftsk gamma domain TOPB45_0687 PF03797 Autotransporter beta-domain TOPB45_0688 PF03129 Anticodon binding domain TOPB45_0688 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TOPB45_0688 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TOPB45_0689 PF05198 Translation initiation factor IF-3, N-terminal domain TOPB45_0689 PF00707 Translation initiation factor IF-3, C-terminal domain TOPB45_0690 PF00117 Glutamine amidotransferase class-I TOPB45_0692 PF04079 Segregation and condensation complex subunit ScpB TOPB45_0693 PF01018 GTP1/OBG TOPB45_0693 PF01926 50S ribosome-binding GTPase TOPB45_0693 PF04055 Radical SAM superfamily TOPB45_0694 PF01066 CDP-alcohol phosphatidyltransferase TOPB45_0695 PF00834 Ribulose-phosphate 3 epimerase family TOPB45_0697 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TOPB45_0697 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TOPB45_0698 PF02547 Queuosine biosynthesis protein TOPB45_0699 PF07690 Major Facilitator Superfamily TOPB45_0701 PF03372 Endonuclease/Exonuclease/phosphatase family TOPB45_0704 PF03477 ATP cone domain TOPB45_0704 PF02867 Ribonucleotide reductase, barrel domain TOPB45_0704 PF00317 Ribonucleotide reductase, all-alpha domain TOPB45_0705 PF02978 Signal peptide binding domain TOPB45_0705 PF00448 SRP54-type protein, GTPase domain TOPB45_0705 PF02881 SRP54-type protein, helical bundle domain TOPB45_0708 PF01782 RimM N-terminal domain TOPB45_0708 PF05239 PRC-barrel domain TOPB45_0709 PF01746 tRNA (Guanine-1)-methyltransferase TOPB45_0709 PF09936 SAM-dependent RNA methyltransferase TOPB45_0710 PF00403 Heavy-metal-associated domain TOPB45_0711 PF00403 Heavy-metal-associated domain TOPB45_0712 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TOPB45_0712 PF02785 Biotin carboxylase C-terminal domain TOPB45_0712 PF00289 Biotin carboxylase, N-terminal domain TOPB45_0713 PF00364 Biotin-requiring enzyme TOPB45_0715 PF00572 Ribosomal protein L13 TOPB45_0716 PF00380 Ribosomal protein S9/S16 TOPB45_0717 PF01118 Semialdehyde dehydrogenase, NAD binding domain TOPB45_0717 PF02774 Semialdehyde dehydrogenase, dimerisation domain TOPB45_0718 PF01416 tRNA pseudouridine synthase TOPB45_0719 PF00475 Imidazoleglycerol-phosphate dehydratase TOPB45_0721 PF01406 tRNA synthetases class I (C) catalytic domain TOPB45_0721 PF09190 DALR domain TOPB45_0722 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TOPB45_0723 PF08502 LeuA allosteric (dimerisation) domain TOPB45_0723 PF00682 HMGL-like TOPB45_0724 PF01842 ACT domain TOPB45_0724 PF13840 ACT domain TOPB45_0724 PF00696 Amino acid kinase family TOPB45_0728 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TOPB45_0729 PF13520 Amino acid permease TOPB45_0734 PF00005 ABC transporter TOPB45_0736 PF01871 AMMECR1 TOPB45_0738 PF00881 Nitroreductase family TOPB45_0740 PF17284 Spermidine synthase tetramerisation domain TOPB45_0741 PF00226 DnaJ domain TOPB45_0741 PF01556 DnaJ C terminal domain TOPB45_0742 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TOPB45_0743 PF00464 Serine hydroxymethyltransferase TOPB45_0744 PF00535 Glycosyl transferase family 2 TOPB45_0748 PF00164 Ribosomal protein S12/S23 TOPB45_0749 PF00177 Ribosomal protein S7p/S5e TOPB45_0750 PF00009 Elongation factor Tu GTP binding domain TOPB45_0750 PF03764 Elongation factor G, domain IV TOPB45_0750 PF00679 Elongation factor G C-terminus TOPB45_0750 PF03144 Elongation factor Tu domain 2 TOPB45_0750 PF14492 Elongation Factor G, domain II TOPB45_0751 PF03143 Elongation factor Tu C-terminal domain TOPB45_0751 PF03144 Elongation factor Tu domain 2 TOPB45_0751 PF00009 Elongation factor Tu GTP binding domain TOPB45_0752 PF00338 Ribosomal protein S10p/S20e TOPB45_0753 PF00297 Ribosomal protein L3 TOPB45_0754 PF00573 Ribosomal protein L4/L1 family TOPB45_0755 PF00276 Ribosomal protein L23 TOPB45_0756 PF00181 Ribosomal Proteins L2, RNA binding domain TOPB45_0756 PF03947 Ribosomal Proteins L2, C-terminal domain TOPB45_0757 PF00203 Ribosomal protein S19 TOPB45_0758 PF00237 Ribosomal protein L22p/L17e TOPB45_0759 PF07650 KH domain TOPB45_0759 PF00189 Ribosomal protein S3, C-terminal domain TOPB45_0760 PF00252 Ribosomal protein L16p/L10e TOPB45_0761 PF00831 Ribosomal L29 protein TOPB45_0762 PF00366 Ribosomal protein S17 TOPB45_0763 PF00238 Ribosomal protein L14p/L23e TOPB45_0764 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TOPB45_0764 PF00467 KOW motif TOPB45_0765 PF00673 ribosomal L5P family C-terminus TOPB45_0765 PF00281 Ribosomal protein L5 TOPB45_0766 PF00253 Ribosomal protein S14p/S29e TOPB45_0767 PF00410 Ribosomal protein S8 TOPB45_0768 PF00347 Ribosomal protein L6 TOPB45_0769 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TOPB45_0770 PF00333 Ribosomal protein S5, N-terminal domain TOPB45_0770 PF03719 Ribosomal protein S5, C-terminal domain TOPB45_0771 PF00327 Ribosomal protein L30p/L7e TOPB45_0772 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TOPB45_0773 PF00344 SecY translocase TOPB45_0774 PF05191 Adenylate kinase, active site lid TOPB45_0775 PF00557 Metallopeptidase family M24 TOPB45_0776 PF01176 Translation initiation factor 1A / IF-1 TOPB45_0777 PF00444 Ribosomal protein L36 TOPB45_0778 PF00416 Ribosomal protein S13/S18 TOPB45_0779 PF00411 Ribosomal protein S11 TOPB45_0780 PF01479 S4 domain TOPB45_0780 PF00163 Ribosomal protein S4/S9 N-terminal domain TOPB45_0781 PF01000 RNA polymerase Rpb3/RpoA insert domain TOPB45_0781 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TOPB45_0781 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TOPB45_0782 PF01196 Ribosomal protein L17 TOPB45_0783 PF01966 HD domain TOPB45_0783 PF01743 Poly A polymerase head domain TOPB45_0783 PF12627 Probable RNA and SrmB- binding site of polymerase A TOPB45_0784 PF05698 Bacterial trigger factor protein (TF) C-terminus TOPB45_0784 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TOPB45_0784 PF05697 Bacterial trigger factor protein (TF) TOPB45_0785 PF00574 Clp protease TOPB45_0786 PF06689 ClpX C4-type zinc finger TOPB45_0786 PF10431 C-terminal, D2-small domain, of ClpB protein TOPB45_0786 PF07724 AAA domain (Cdc48 subfamily) TOPB45_0787 PF02190 ATP-dependent protease La (LON) substrate-binding domain TOPB45_0787 PF05362 Lon protease (S16) C-terminal proteolytic domain TOPB45_0787 PF00004 ATPase family associated with various cellular activities (AAA) TOPB45_0788 PF07497 Rho termination factor, RNA-binding domain TOPB45_0788 PF07498 Rho termination factor, N-terminal domain TOPB45_0788 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOPB45_0789 PF17805 AsnC-like ligand binding domain TOPB45_0790 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase TOPB45_0792 PF00672 HAMP domain TOPB45_0792 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_0792 PF00989 PAS fold TOPB45_0792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_0793 PF01367 5'-3' exonuclease, C-terminal SAM fold TOPB45_0793 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TOPB45_0793 PF00476 DNA polymerase family A TOPB45_0794 PF01165 Ribosomal protein S21 TOPB45_0795 PF01713 Smr domain TOPB45_0795 PF00488 MutS domain V TOPB45_0796 PF01807 CHC2 zinc finger TOPB45_0796 PF10410 DnaB-helicase binding domain of primase TOPB45_0796 PF08275 DNA primase catalytic core, N-terminal domain TOPB45_0797 PF04545 Sigma-70, region 4 TOPB45_0797 PF04539 Sigma-70 region 3 TOPB45_0797 PF04542 Sigma-70 region 2 TOPB45_0797 PF00140 Sigma-70 factor, region 1.2 TOPB45_0797 PF03979 Sigma-70 factor, region 1.1 TOPB45_0797 PF04546 Sigma-70, non-essential region TOPB45_0799 PF01925 Sulfite exporter TauE/SafE TOPB45_0800 PF01435 Peptidase family M48 TOPB45_0817 PF17820 PDZ domain TOPB45_0817 PF13180 PDZ domain TOPB45_0821 PF02698 DUF218 domain TOPB45_0822 PF13580 SIS domain TOPB45_0823 PF00814 Glycoprotease family TOPB45_0824 PF00158 Sigma-54 interaction domain TOPB45_0824 PF02954 Bacterial regulatory protein, Fis family TOPB45_0824 PF00072 Response regulator receiver domain TOPB45_0825 PF02632 BioY family TOPB45_0826 PF02675 S-adenosylmethionine decarboxylase TOPB45_0827 PF00491 Arginase family TOPB45_0831 PF00149 Calcineurin-like phosphoesterase TOPB45_0833 PF00589 Phage integrase family TOPB45_0833 PF02899 Phage integrase, N-terminal SAM-like domain TOPB45_0834 PF01743 Poly A polymerase head domain TOPB45_0834 PF12627 Probable RNA and SrmB- binding site of polymerase A TOPB45_0834 PF13735 tRNA nucleotidyltransferase domain 2 putative TOPB45_0835 PF00575 S1 RNA binding domain TOPB45_0836 PF01343 Peptidase family S49 TOPB45_0837 PF00216 Bacterial DNA-binding protein TOPB45_0838 PF00478 IMP dehydrogenase / GMP reductase domain TOPB45_0838 PF00571 CBS domain TOPB45_0839 PF00482 Type II secretion system (T2SS), protein F TOPB45_0841 PF02673 Bacitracin resistance protein BacA TOPB45_0843 PF17827 PrmC N-terminal domain TOPB45_0843 PF05175 Methyltransferase small domain TOPB45_0844 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TOPB45_0845 PF09115 DNA polymerase III, delta subunit, C terminal TOPB45_0850 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TOPB45_0850 PF01676 Metalloenzyme superfamily TOPB45_0851 PF01618 MotA/TolQ/ExbB proton channel family TOPB45_0852 PF02472 Biopolymer transport protein ExbD/TolR TOPB45_0857 PF00912 Transglycosylase TOPB45_0859 PF01068 ATP dependent DNA ligase domain TOPB45_0859 PF04679 ATP dependent DNA ligase C terminal region TOPB45_0859 PF04675 DNA ligase N terminus TOPB45_0869 PF07726 ATPase family associated with various cellular activities (AAA) TOPB45_0869 PF17863 AAA lid domain TOPB45_0872 PF02163 Peptidase family M50 TOPB45_0872 PF17820 PDZ domain TOPB45_0874 PF00588 SpoU rRNA Methylase family TOPB45_0875 PF05958 tRNA (Uracil-5-)-methyltransferase TOPB45_0876 PF01869 BadF/BadG/BcrA/BcrD ATPase family TOPB45_0879 PF00119 ATP synthase A chain TOPB45_0880 PF00137 ATP synthase subunit C TOPB45_0881 PF01078 Magnesium chelatase, subunit ChlI TOPB45_0881 PF13335 Magnesium chelatase, subunit ChlI C-terminal TOPB45_0882 PF01066 CDP-alcohol phosphatidyltransferase TOPB45_0882 PF00483 Nucleotidyl transferase TOPB45_0883 PF01455 HupF/HypC family TOPB45_0884 PF01924 Hydrogenase formation hypA family TOPB45_0885 PF00374 Nickel-dependent hydrogenase TOPB45_0886 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TOPB45_0886 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TOPB45_0888 PF01022 Bacterial regulatory protein, arsR family TOPB45_0894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_0894 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_0894 PF00989 PAS fold TOPB45_0895 PF00158 Sigma-54 interaction domain TOPB45_0895 PF02954 Bacterial regulatory protein, Fis family TOPB45_0895 PF00072 Response regulator receiver domain TOPB45_0896 PF13247 4Fe-4S dicluster domain TOPB45_0896 PF12800 4Fe-4S binding domain TOPB45_0897 PF01568 Molydopterin dinucleotide binding domain TOPB45_0897 PF00384 Molybdopterin oxidoreductase TOPB45_0897 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TOPB45_0902 PF06827 Zinc finger found in FPG and IleRS TOPB45_0902 PF00133 tRNA synthetases class I (I, L, M and V) TOPB45_0902 PF08264 Anticodon-binding domain of tRNA TOPB45_0903 PF01252 Signal peptidase (SPase) II TOPB45_0906 PF00180 Isocitrate/isopropylmalate dehydrogenase TOPB45_0907 PF01541 GIY-YIG catalytic domain TOPB45_0907 PF02151 UvrB/uvrC motif TOPB45_0907 PF08459 UvrC Helix-hairpin-helix N-terminal TOPB45_0908 PF00196 Bacterial regulatory proteins, luxR family TOPB45_0908 PF00072 Response regulator receiver domain TOPB45_0914 PF03783 Curli production assembly/transport component CsgG TOPB45_0916 PF00437 Type II/IV secretion system protein TOPB45_0917 PF00482 Type II secretion system (T2SS), protein F TOPB45_0919 PF13401 AAA domain TOPB45_0919 PF01471 Putative peptidoglycan binding domain TOPB45_0926 PF00114 Pilin (bacterial filament) TOPB45_0926 PF07963 Prokaryotic N-terminal methylation motif TOPB45_0927 PF02875 Mur ligase family, glutamate ligase domain TOPB45_0927 PF01225 Mur ligase family, catalytic domain TOPB45_0927 PF08245 Mur ligase middle domain TOPB45_0930 PF13476 AAA domain TOPB45_0931 PF00005 ABC transporter TOPB45_0931 PF08402 TOBE domain TOPB45_0932 PF00528 Binding-protein-dependent transport system inner membrane component TOPB45_0935 PF02381 MraZ protein, putative antitoxin-like TOPB45_0936 PF01795 MraW methylase family TOPB45_0939 PF08245 Mur ligase middle domain TOPB45_0939 PF02875 Mur ligase family, glutamate ligase domain TOPB45_0939 PF01225 Mur ligase family, catalytic domain TOPB45_0940 PF01225 Mur ligase family, catalytic domain TOPB45_0940 PF02875 Mur ligase family, glutamate ligase domain TOPB45_0940 PF08245 Mur ligase middle domain TOPB45_0942 PF08245 Mur ligase middle domain TOPB45_0942 PF02875 Mur ligase family, glutamate ligase domain TOPB45_0943 PF04101 Glycosyltransferase family 28 C-terminal domain TOPB45_0943 PF03033 Glycosyltransferase family 28 N-terminal domain TOPB45_0944 PF08245 Mur ligase middle domain TOPB45_0944 PF01225 Mur ligase family, catalytic domain TOPB45_0944 PF02875 Mur ligase family, glutamate ligase domain TOPB45_0945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TOPB45_0945 PF01565 FAD binding domain TOPB45_0947 PF02491 SHS2 domain inserted in FTSA TOPB45_0948 PF12327 FtsZ family, C-terminal domain TOPB45_0948 PF00091 Tubulin/FtsZ family, GTPase domain TOPB45_0951 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TOPB45_0955 PF01430 Hsp33 protein TOPB45_0956 PF01180 Dihydroorotate dehydrogenase TOPB45_0957 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TOPB45_0959 PF03023 Lipid II flippase MurJ TOPB45_0960 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TOPB45_0960 PF00925 GTP cyclohydrolase II TOPB45_0962 PF00535 Glycosyl transferase family 2 TOPB45_0969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_0969 PF00989 PAS fold TOPB45_0969 PF13188 PAS domain TOPB45_0969 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_0969 PF13426 PAS domain TOPB45_0970 PF02954 Bacterial regulatory protein, Fis family TOPB45_0970 PF00072 Response regulator receiver domain TOPB45_0970 PF00158 Sigma-54 interaction domain TOPB45_0973 PF01938 TRAM domain TOPB45_0973 PF04055 Radical SAM superfamily TOPB45_0973 PF00919 Uncharacterized protein family UPF0004 TOPB45_0974 PF02633 Creatinine amidohydrolase TOPB45_0978 PF10414 Sirohaem synthase dimerisation region TOPB45_0978 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TOPB45_0978 PF14824 Sirohaem biosynthesis protein central TOPB45_0979 PF00293 NUDIX domain TOPB45_0980 PF02190 ATP-dependent protease La (LON) substrate-binding domain TOPB45_0980 PF05362 Lon protease (S16) C-terminal proteolytic domain TOPB45_0980 PF00004 ATPase family associated with various cellular activities (AAA) TOPB45_0981 PF01245 Ribosomal protein L19 TOPB45_0982 PF01351 Ribonuclease HII TOPB45_0983 PF02021 Uncharacterised protein family UPF0102 TOPB45_0985 PF03477 ATP cone domain TOPB45_0985 PF02867 Ribonucleotide reductase, barrel domain TOPB45_0985 PF00317 Ribonucleotide reductase, all-alpha domain TOPB45_0986 PF00742 Homoserine dehydrogenase TOPB45_0986 PF01842 ACT domain TOPB45_0986 PF03447 Homoserine dehydrogenase, NAD binding domain TOPB45_0992 PF12169 DNA polymerase III subunits gamma and tau domain III TOPB45_0993 PF02575 YbaB/EbfC DNA-binding family TOPB45_0996 PF02481 DNA recombination-mediator protein A TOPB45_0996 PF17782 DprA winged helix domain TOPB45_0997 PF07690 Major Facilitator Superfamily TOPB45_0998 PF02843 Phosphoribosylglycinamide synthetase, C domain TOPB45_0998 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TOPB45_0998 PF02844 Phosphoribosylglycinamide synthetase, N domain TOPB45_0999 PF00731 AIR carboxylase TOPB45_1000 PF01206 Sulfurtransferase TusA TOPB45_1000 PF00581 Rhodanese-like domain TOPB45_1002 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TOPB45_1006 PF02355 Protein export membrane protein TOPB45_1006 PF07549 SecD/SecF GG Motif TOPB45_1007 PF02911 Formyl transferase, C-terminal domain TOPB45_1007 PF00551 Formyl transferase TOPB45_1008 PF00004 ATPase family associated with various cellular activities (AAA) TOPB45_1008 PF10431 C-terminal, D2-small domain, of ClpB protein TOPB45_1008 PF07724 AAA domain (Cdc48 subfamily) TOPB45_1008 PF17871 AAA lid domain TOPB45_1008 PF02861 Clp amino terminal domain, pathogenicity island component TOPB45_1009 PF00011 Hsp20/alpha crystallin family TOPB45_1010 PF02769 AIR synthase related protein, C-terminal domain TOPB45_1010 PF00586 AIR synthase related protein, N-terminal domain TOPB45_1011 PF00334 Nucleoside diphosphate kinase TOPB45_1013 PF02163 Peptidase family M50 TOPB45_1014 PF13180 PDZ domain TOPB45_1014 PF03572 Peptidase family S41 TOPB45_1015 PF00318 Ribosomal protein S2 TOPB45_1016 PF00889 Elongation factor TS TOPB45_1017 PF00696 Amino acid kinase family TOPB45_1018 PF01765 Ribosome recycling factor TOPB45_1019 PF01255 Putative undecaprenyl diphosphate synthase TOPB45_1022 PF07478 D-ala D-ala ligase C-terminus TOPB45_1022 PF01820 D-ala D-ala ligase N-terminus TOPB45_1024 PF04972 BON domain TOPB45_1025 PF16199 Radical_SAM C-terminal domain TOPB45_1025 PF04055 Radical SAM superfamily TOPB45_1027 PF00689 Cation transporting ATPase, C-terminus TOPB45_1027 PF00690 Cation transporter/ATPase, N-terminus TOPB45_1029 PF13932 GidA associated domain TOPB45_1029 PF01134 Glucose inhibited division protein A TOPB45_1032 PF04546 Sigma-70, non-essential region TOPB45_1032 PF00140 Sigma-70 factor, region 1.2 TOPB45_1032 PF04542 Sigma-70 region 2 TOPB45_1032 PF04539 Sigma-70 region 3 TOPB45_1032 PF03979 Sigma-70 factor, region 1.1 TOPB45_1032 PF04545 Sigma-70, region 4 TOPB45_1033 PF13361 UvrD-like helicase C-terminal domain TOPB45_1033 PF00580 UvrD/REP helicase N-terminal domain TOPB45_1036 PF00696 Amino acid kinase family TOPB45_1037 PF00133 tRNA synthetases class I (I, L, M and V) TOPB45_1037 PF08264 Anticodon-binding domain of tRNA TOPB45_1037 PF10458 Valyl tRNA synthetase tRNA binding arm TOPB45_1039 PF02463 RecF/RecN/SMC N terminal domain TOPB45_1039 PF06470 SMC proteins Flexible Hinge Domain TOPB45_1042 PF00391 PEP-utilising enzyme, mobile domain TOPB45_1042 PF00224 Pyruvate kinase, barrel domain TOPB45_1042 PF02887 Pyruvate kinase, alpha/beta domain TOPB45_1045 PF01259 SAICAR synthetase TOPB45_1048 PF00176 SNF2 family N-terminal domain TOPB45_1048 PF00271 Helicase conserved C-terminal domain TOPB45_1062 PF01131 DNA topoisomerase TOPB45_1062 PF01751 Toprim domain TOPB45_1063 PF08245 Mur ligase middle domain TOPB45_1063 PF02875 Mur ligase family, glutamate ligase domain TOPB45_1068 PF02687 FtsX-like permease family TOPB45_1068 PF00005 ABC transporter TOPB45_1068 PF12704 MacB-like periplasmic core domain TOPB45_1069 PF02687 FtsX-like permease family TOPB45_1069 PF00005 ABC transporter TOPB45_1069 PF12704 MacB-like periplasmic core domain TOPB45_1070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TOPB45_1072 PF13520 Amino acid permease TOPB45_1073 PF01914 MarC family integral membrane protein TOPB45_1075 PF16198 tRNA pseudouridylate synthase B C-terminal domain TOPB45_1075 PF01509 TruB family pseudouridylate synthase (N terminal domain) TOPB45_1077 PF02033 Ribosome-binding factor A TOPB45_1079 PF04760 Translation initiation factor IF-2, N-terminal region TOPB45_1079 PF00009 Elongation factor Tu GTP binding domain TOPB45_1079 PF11987 Translation-initiation factor 2 TOPB45_1080 PF02348 Cytidylyltransferase TOPB45_1081 PF01875 Memo-like protein TOPB45_1082 PF00749 tRNA synthetases class I (E and Q), catalytic domain TOPB45_1083 PF08448 PAS fold TOPB45_1083 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_1083 PF00563 EAL domain TOPB45_1108 PF05362 Lon protease (S16) C-terminal proteolytic domain TOPB45_1108 PF02190 ATP-dependent protease La (LON) substrate-binding domain TOPB45_1108 PF00004 ATPase family associated with various cellular activities (AAA) TOPB45_1109 PF18211 Csm1 subunit domain B TOPB45_1111 PF03787 RAMP superfamily TOPB45_1113 PF03787 RAMP superfamily TOPB45_1117 PF09827 CRISPR associated protein Cas2 TOPB45_1118 PF01867 CRISPR associated protein Cas1 TOPB45_1122 PF02656 Domain of unknown function (DUF202) TOPB45_1123 PF00849 RNA pseudouridylate synthase TOPB45_1123 PF01479 S4 domain TOPB45_1124 PF02705 K+ potassium transporter TOPB45_1125 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_1125 PF00072 Response regulator receiver domain TOPB45_1128 PF01292 Prokaryotic cytochrome b561 TOPB45_1131 PF00579 tRNA synthetases class I (W and Y) TOPB45_1132 PF12826 Helix-hairpin-helix motif TOPB45_1132 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TOPB45_1132 PF03120 NAD-dependent DNA ligase OB-fold domain TOPB45_1132 PF01653 NAD-dependent DNA ligase adenylation domain TOPB45_1132 PF00533 BRCA1 C Terminus (BRCT) domain TOPB45_1133 PF05140 ResB-like family TOPB45_1135 PF00005 ABC transporter TOPB45_1137 PF03144 Elongation factor Tu domain 2 TOPB45_1137 PF00009 Elongation factor Tu GTP binding domain TOPB45_1137 PF06421 GTP-binding protein LepA C-terminus TOPB45_1137 PF00679 Elongation factor G C-terminus TOPB45_1138 PF10502 Signal peptidase, peptidase S26 TOPB45_1140 PF01895 PhoU domain TOPB45_1141 PF01171 PP-loop family TOPB45_1145 PF01479 S4 domain TOPB45_1145 PF00849 RNA pseudouridylate synthase TOPB45_1146 PF01545 Cation efflux family TOPB45_1146 PF16916 Dimerisation domain of Zinc Transporter TOPB45_1147 PF02390 Putative methyltransferase TOPB45_1147 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TOPB45_1149 PF01725 Ham1 family TOPB45_1150 PF03725 3' exoribonuclease family, domain 2 TOPB45_1150 PF01138 3' exoribonuclease family, domain 1 TOPB45_1152 PF02774 Semialdehyde dehydrogenase, dimerisation domain TOPB45_1152 PF01118 Semialdehyde dehydrogenase, NAD binding domain TOPB45_1153 PF01402 Ribbon-helix-helix protein, copG family TOPB45_1153 PF08753 NikR C terminal nickel binding domain TOPB45_1154 PF00575 S1 RNA binding domain TOPB45_1154 PF17876 Cold shock domain TOPB45_1154 PF00773 RNB domain TOPB45_1154 PF08206 Ribonuclease B OB domain TOPB45_1156 PF00155 Aminotransferase class I and II TOPB45_1157 PF01458 Uncharacterized protein family (UPF0051) TOPB45_1158 PF00005 ABC transporter TOPB45_1159 PF01555 DNA methylase TOPB45_1161 PF00575 S1 RNA binding domain TOPB45_1161 PF03725 3' exoribonuclease family, domain 2 TOPB45_1161 PF01138 3' exoribonuclease family, domain 1 TOPB45_1161 PF00013 KH domain TOPB45_1161 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TOPB45_1162 PF01048 Phosphorylase superfamily TOPB45_1163 PF00575 S1 RNA binding domain TOPB45_1163 PF10150 Ribonuclease E/G family TOPB45_1164 PF08645 Polynucleotide kinase 3 phosphatase TOPB45_1165 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TOPB45_1166 PF00005 ABC transporter TOPB45_1166 PF00664 ABC transporter transmembrane region TOPB45_1167 PF01435 Peptidase family M48 TOPB45_1169 PF02666 Phosphatidylserine decarboxylase TOPB45_1170 PF01066 CDP-alcohol phosphatidyltransferase TOPB45_1171 PF04025 Domain of unknown function (DUF370) TOPB45_1172 PF00625 Guanylate kinase TOPB45_1173 PF00588 SpoU rRNA Methylase family TOPB45_1173 PF08032 RNA 2'-O ribose methyltransferase substrate binding TOPB45_1176 PF02577 Bifunctional nuclease TOPB45_1180 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_1181 PF00072 Response regulator receiver domain TOPB45_1181 PF01966 HD domain TOPB45_1182 PF04023 FeoA domain TOPB45_1183 PF07670 Nucleoside recognition TOPB45_1183 PF04023 FeoA domain TOPB45_1183 PF07664 Ferrous iron transport protein B C terminus TOPB45_1183 PF17910 FeoB cytosolic helical domain TOPB45_1183 PF02421 Ferrous iron transport protein B TOPB45_1185 PF01230 HIT domain TOPB45_1186 PF00133 tRNA synthetases class I (I, L, M and V) TOPB45_1186 PF09334 tRNA synthetases class I (M) TOPB45_1186 PF01588 Putative tRNA binding domain TOPB45_1187 PF04468 PSP1 C-terminal conserved region TOPB45_1188 PF04055 Radical SAM superfamily TOPB45_1188 PF06463 Molybdenum Cofactor Synthesis C TOPB45_1190 PF03966 Trm112p-like protein TOPB45_1192 PF08207 Elongation factor P (EF-P) KOW-like domain TOPB45_1192 PF09285 Elongation factor P, C-terminal TOPB45_1192 PF01132 Elongation factor P (EF-P) OB domain TOPB45_1193 PF01861 Branched-chain polyamine synthase A C-terminal domain TOPB45_1195 PF00563 EAL domain TOPB45_1195 PF03707 Bacterial signalling protein N terminal repeat TOPB45_1195 PF00990 Diguanylate cyclase, GGDEF domain TOPB45_1196 PF03477 ATP cone domain TOPB45_1197 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TOPB45_1203 PF13247 4Fe-4S dicluster domain TOPB45_1205 PF07685 CobB/CobQ-like glutamine amidotransferase domain TOPB45_1205 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TOPB45_1212 PF07660 Secretin and TonB N terminus short domain TOPB45_1212 PF03958 Bacterial type II/III secretion system short domain TOPB45_1212 PF00263 Bacterial type II and III secretion system protein TOPB45_1212 PF11741 AMIN domain TOPB45_1213 PF01134 Glucose inhibited division protein A TOPB45_1214 PF02699 Preprotein translocase subunit TOPB45_1215 PF01702 Queuine tRNA-ribosyltransferase TOPB45_1216 PF00155 Aminotransferase class I and II TOPB45_1219 PF00583 Acetyltransferase (GNAT) family TOPB45_1219 PF01047 MarR family TOPB45_1224 PF18395 Cas3 C-terminal domain TOPB45_1224 PF18019 HD domain TOPB45_1224 PF00270 DEAD/DEAH box helicase TOPB45_1226 PF01867 CRISPR associated protein Cas1 TOPB45_1227 PF09827 CRISPR associated protein Cas2 TOPB45_1234 PF02417 Chromate transporter TOPB45_1236 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TOPB45_1236 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TOPB45_1237 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TOPB45_1240 PF01206 Sulfurtransferase TusA TOPB45_1242 PF00582 Universal stress protein family TOPB45_1247 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_1247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_1247 PF08448 PAS fold TOPB45_1247 PF00072 Response regulator receiver domain TOPB45_1247 PF13188 PAS domain TOPB45_1248 PF00072 Response regulator receiver domain TOPB45_1248 PF00158 Sigma-54 interaction domain TOPB45_1248 PF02954 Bacterial regulatory protein, Fis family TOPB45_1249 PF01980 tRNA-methyltransferase O TOPB45_1251 PF00291 Pyridoxal-phosphate dependent enzyme TOPB45_1252 PF02535 ZIP Zinc transporter TOPB45_1255 PF01645 Conserved region in glutamate synthase TOPB45_1255 PF04898 Glutamate synthase central domain TOPB45_1255 PF00310 Glutamine amidotransferases class-II TOPB45_1255 PF01493 GXGXG motif TOPB45_1256 PF02540 NAD synthase TOPB45_1257 PF03951 Glutamine synthetase, beta-Grasp domain TOPB45_1257 PF00120 Glutamine synthetase, catalytic domain TOPB45_1258 PF00158 Sigma-54 interaction domain TOPB45_1258 PF01590 GAF domain TOPB45_1258 PF02954 Bacterial regulatory protein, Fis family TOPB45_1259 PF00117 Glutamine amidotransferase class-I TOPB45_1259 PF00958 GMP synthase C terminal domain TOPB45_1259 PF02540 NAD synthase TOPB45_1260 PF00543 Nitrogen regulatory protein P-II TOPB45_1262 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) TOPB45_1263 PF13193 AMP-binding enzyme C-terminal domain TOPB45_1263 PF01553 Acyltransferase TOPB45_1263 PF00501 AMP-binding enzyme TOPB45_1266 PF10609 NUBPL iron-transfer P-loop NTPase TOPB45_1267 PF02562 PhoH-like protein TOPB45_1268 PF02325 YGGT family TOPB45_1269 PF02594 Uncharacterised ACR, YggU family COG1872 TOPB45_1270 PF01189 16S rRNA methyltransferase RsmB/F TOPB45_1270 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TOPB45_1270 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TOPB45_1271 PF00709 Adenylosuccinate synthetase TOPB45_1272 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TOPB45_1272 PF00289 Biotin carboxylase, N-terminal domain TOPB45_1272 PF02785 Biotin carboxylase C-terminal domain TOPB45_1273 PF17848 Acetyl-coA carboxylase zinc finger domain TOPB45_1273 PF01039 Carboxyl transferase domain TOPB45_1275 PF02237 Biotin protein ligase C terminal domain TOPB45_1275 PF03099 Biotin/lipoate A/B protein ligase family TOPB45_1276 PF02142 MGS-like domain TOPB45_1276 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TOPB45_1276 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TOPB45_1278 PF00005 ABC transporter TOPB45_1282 PF00586 AIR synthase related protein, N-terminal domain TOPB45_1282 PF02769 AIR synthase related protein, C-terminal domain TOPB45_1283 PF02091 Glycyl-tRNA synthetase alpha subunit TOPB45_1284 PF02092 Glycyl-tRNA synthetase beta subunit TOPB45_1284 PF05746 DALR anticodon binding domain TOPB45_1285 PF00009 Elongation factor Tu GTP binding domain TOPB45_1285 PF09107 Elongation factor SelB, winged helix TOPB45_1285 PF09106 Elongation factor SelB, winged helix TOPB45_1285 PF09105 Elongation factor SelB, winged helix TOPB45_1285 PF03144 Elongation factor Tu domain 2 TOPB45_1286 PF05362 Lon protease (S16) C-terminal proteolytic domain TOPB45_1286 PF13654 AAA domain TOPB45_1287 PF00330 Aconitase family (aconitate hydratase) TOPB45_1288 PF00694 Aconitase C-terminal domain TOPB45_1289 PF03819 MazG nucleotide pyrophosphohydrolase domain TOPB45_1290 PF00005 ABC transporter TOPB45_1291 PF00950 ABC 3 transport family TOPB45_1292 PF01026 TatD related DNase TOPB45_1293 PF00152 tRNA synthetases class II (D, K and N) TOPB45_1293 PF02938 GAD domain TOPB45_1293 PF01336 OB-fold nucleic acid binding domain TOPB45_1295 PF03167 Uracil DNA glycosylase superfamily TOPB45_1296 PF01012 Electron transfer flavoprotein domain TOPB45_1296 PF00766 Electron transfer flavoprotein FAD-binding domain TOPB45_1297 PF01012 Electron transfer flavoprotein domain TOPB45_1298 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TOPB45_1298 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TOPB45_1298 PF02770 Acyl-CoA dehydrogenase, middle domain TOPB45_1299 PF00109 Beta-ketoacyl synthase, N-terminal domain TOPB45_1299 PF02801 Beta-ketoacyl synthase, C-terminal domain TOPB45_1300 PF00501 AMP-binding enzyme TOPB45_1300 PF13193 AMP-binding enzyme C-terminal domain TOPB45_1303 PF00586 AIR synthase related protein, N-terminal domain TOPB45_1303 PF02769 AIR synthase related protein, C-terminal domain TOPB45_1303 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TOPB45_1305 PF00365 Phosphofructokinase TOPB45_1307 PF14489 QueF-like protein TOPB45_1309 PF00210 Ferritin-like domain TOPB45_1310 PF00005 ABC transporter TOPB45_1311 PF02361 Cobalt transport protein TOPB45_1313 PF01891 Cobalt uptake substrate-specific transmembrane region TOPB45_1318 PF00684 DnaJ central domain TOPB45_1318 PF01556 DnaJ C terminal domain TOPB45_1318 PF00226 DnaJ domain TOPB45_1319 PF01739 CheR methyltransferase, SAM binding domain TOPB45_1319 PF03705 CheR methyltransferase, all-alpha domain TOPB45_1320 PF01339 CheB methylesterase TOPB45_1320 PF00072 Response regulator receiver domain TOPB45_1325 PF00072 Response regulator receiver domain TOPB45_1326 PF04542 Sigma-70 region 2 TOPB45_1326 PF04545 Sigma-70, region 4 TOPB45_1326 PF04539 Sigma-70 region 3 TOPB45_1327 PF10609 NUBPL iron-transfer P-loop NTPase TOPB45_1328 PF02881 SRP54-type protein, helical bundle domain TOPB45_1328 PF00448 SRP54-type protein, GTPase domain TOPB45_1328 PF02978 Signal peptide binding domain TOPB45_1329 PF00771 FHIPEP family TOPB45_1330 PF01312 FlhB HrpN YscU SpaS Family TOPB45_1332 PF01313 Bacterial export proteins, family 3 TOPB45_1333 PF00813 FliP family TOPB45_1335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TOPB45_1336 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TOPB45_1336 PF02154 Flagellar motor switch protein FliM TOPB45_1339 PF01661 Macro domain TOPB45_1345 PF00700 Bacterial flagellin C-terminal helical region TOPB45_1345 PF00669 Bacterial flagellin N-terminal helical region TOPB45_1347 PF04055 Radical SAM superfamily TOPB45_1348 PF04545 Sigma-70, region 4 TOPB45_1348 PF04542 Sigma-70 region 2 TOPB45_1348 PF00140 Sigma-70 factor, region 1.2 TOPB45_1351 PF03471 Transporter associated domain TOPB45_1351 PF01595 Cyclin M transmembrane N-terminal domain TOPB45_1351 PF00571 CBS domain TOPB45_1352 PF00571 CBS domain TOPB45_1352 PF03471 Transporter associated domain TOPB45_1352 PF01595 Cyclin M transmembrane N-terminal domain TOPB45_1355 PF13361 UvrD-like helicase C-terminal domain TOPB45_1355 PF00580 UvrD/REP helicase N-terminal domain TOPB45_1357 PF00270 DEAD/DEAH box helicase TOPB45_1357 PF00271 Helicase conserved C-terminal domain TOPB45_1357 PF03461 TRCF domain TOPB45_1357 PF17757 UvrB interaction domain TOPB45_1357 PF02559 CarD-like/TRCF domain TOPB45_1359 PF01016 Ribosomal L27 protein TOPB45_1360 PF02660 Glycerol-3-phosphate acyltransferase TOPB45_1364 PF01434 Peptidase family M41 TOPB45_1364 PF06480 FtsH Extracellular TOPB45_1364 PF17862 AAA+ lid domain TOPB45_1364 PF00004 ATPase family associated with various cellular activities (AAA) TOPB45_1365 PF00809 Pterin binding enzyme TOPB45_1366 PF02457 DisA bacterial checkpoint controller nucleotide-binding TOPB45_1368 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TOPB45_1368 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TOPB45_1368 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TOPB45_1368 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TOPB45_1371 PF10672 S-adenosylmethionine-dependent methyltransferase TOPB45_1371 PF17785 PUA-like domain TOPB45_1375 PF03749 Sugar fermentation stimulation protein RE domain TOPB45_1375 PF17746 SfsA N-terminal OB domain TOPB45_1376 PF08032 RNA 2'-O ribose methyltransferase substrate binding TOPB45_1376 PF00588 SpoU rRNA Methylase family TOPB45_1377 PF16360 GTP-binding GTPase Middle Region TOPB45_1377 PF13167 GTP-binding GTPase N-terminal TOPB45_1377 PF01926 50S ribosome-binding GTPase TOPB45_1380 PF01380 SIS domain TOPB45_1382 PF02224 Cytidylate kinase TOPB45_1383 PF01029 NusB family TOPB45_1384 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TOPB45_1384 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TOPB45_1385 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TOPB45_1385 PF02896 PEP-utilising enzyme, TIM barrel domain TOPB45_1385 PF00391 PEP-utilising enzyme, mobile domain TOPB45_1386 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TOPB45_1386 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TOPB45_1387 PF00583 Acetyltransferase (GNAT) family TOPB45_1388 PF03668 P-loop ATPase protein family TOPB45_1389 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TOPB45_1390 PF04552 Sigma-54, DNA binding domain TOPB45_1390 PF04963 Sigma-54 factor, core binding domain TOPB45_1390 PF00309 Sigma-54 factor, Activator interacting domain (AID) TOPB45_1391 PF00005 ABC transporter TOPB45_1391 PF12399 Branched-chain amino acid ATP-binding cassette transporter TOPB45_1393 PF00118 TCP-1/cpn60 chaperonin family TOPB45_1394 PF00166 Chaperonin 10 Kd subunit TOPB45_1396 PF16200 C-terminal region of band_7 TOPB45_1396 PF01145 SPFH domain / Band 7 family TOPB45_1398 PF00205 Thiamine pyrophosphate enzyme, central domain TOPB45_1398 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TOPB45_1398 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TOPB45_1399 PF01842 ACT domain TOPB45_1399 PF10369 Small subunit of acetolactate synthase TOPB45_1400 PF00456 Transketolase, thiamine diphosphate binding domain TOPB45_1401 PF00902 Sec-independent protein translocase protein (TatC) TOPB45_1402 PF02416 mttA/Hcf106 family TOPB45_1403 PF00483 Nucleotidyl transferase TOPB45_1405 PF08679 Dissimilatory sulfite reductase D (DsrD) TOPB45_1406 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TOPB45_1406 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TOPB45_1407 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TOPB45_1407 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TOPB45_1409 PF02634 FdhD/NarQ family TOPB45_1410 PF10996 Beta-Casp domain TOPB45_1410 PF00753 Metallo-beta-lactamase superfamily TOPB45_1410 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TOPB45_1412 PF00830 Ribosomal L28 family TOPB45_1413 PF02824 TGS domain TOPB45_1413 PF04607 Region found in RelA / SpoT proteins TOPB45_1413 PF13291 ACT domain TOPB45_1414 PF02780 Transketolase, C-terminal domain TOPB45_1414 PF02779 Transketolase, pyrimidine binding domain TOPB45_1414 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TOPB45_1415 PF00348 Polyprenyl synthetase TOPB45_1416 PF02609 Exonuclease VII small subunit TOPB45_1417 PF02601 Exonuclease VII, large subunit TOPB45_1417 PF13742 OB-fold nucleic acid binding domain TOPB45_1422 PF10609 NUBPL iron-transfer P-loop NTPase TOPB45_1422 PF01883 Iron-sulfur cluster assembly protein TOPB45_1426 PF02082 Transcriptional regulator TOPB45_1427 PF02322 Cytochrome bd terminal oxidase subunit II TOPB45_1428 PF01654 Cytochrome bd terminal oxidase subunit I TOPB45_1433 PF13603 Leucyl-tRNA synthetase, Domain 2 TOPB45_1433 PF00133 tRNA synthetases class I (I, L, M and V) TOPB45_1433 PF08264 Anticodon-binding domain of tRNA TOPB45_1433 PF09334 tRNA synthetases class I (M) TOPB45_1434 PF00180 Isocitrate/isopropylmalate dehydrogenase TOPB45_1435 PF03167 Uracil DNA glycosylase superfamily TOPB45_1436 PF01957 NfeD-like C-terminal, partner-binding TOPB45_1436 PF01972 Serine dehydrogenase proteinase TOPB45_1438 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TOPB45_1440 PF02127 Aminopeptidase I zinc metalloprotease (M18) TOPB45_1442 PF01649 Ribosomal protein S20 TOPB45_1443 PF00679 Elongation factor G C-terminus TOPB45_1443 PF03144 Elongation factor Tu domain 2 TOPB45_1443 PF00009 Elongation factor Tu GTP binding domain TOPB45_1443 PF03764 Elongation factor G, domain IV TOPB45_1443 PF14492 Elongation Factor G, domain II TOPB45_1444 PF00994 Probable molybdopterin binding domain TOPB45_1446 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TOPB45_1447 PF01869 BadF/BadG/BcrA/BcrD ATPase family TOPB45_1448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TOPB45_1448 PF03466 LysR substrate binding domain TOPB45_1449 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TOPB45_1449 PF00384 Molybdopterin oxidoreductase TOPB45_1449 PF01568 Molydopterin dinucleotide binding domain TOPB45_1450 PF13247 4Fe-4S dicluster domain TOPB45_1452 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TOPB45_1454 PF01230 HIT domain TOPB45_1455 PF01479 S4 domain TOPB45_1455 PF00579 tRNA synthetases class I (W and Y) TOPB45_1457 PF03900 Porphobilinogen deaminase, C-terminal domain TOPB45_1457 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TOPB45_1459 PF02754 Cysteine-rich domain TOPB45_1460 PF01370 NAD dependent epimerase/dehydratase family TOPB45_1461 PF03471 Transporter associated domain TOPB45_1461 PF03741 Integral membrane protein TerC family TOPB45_1461 PF00571 CBS domain TOPB45_1462 PF00795 Carbon-nitrogen hydrolase TOPB45_1463 PF02441 Flavoprotein TOPB45_1464 PF00075 RNase H TOPB45_1467 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TOPB45_1467 PF00672 HAMP domain TOPB45_1468 PF01584 CheW-like domain TOPB45_1469 PF02895 Signal transducing histidine kinase, homodimeric domain TOPB45_1469 PF07194 P2 response regulator binding domain TOPB45_1469 PF01627 Hpt domain TOPB45_1469 PF01584 CheW-like domain TOPB45_1469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_1470 PF02016 LD-carboxypeptidase N-terminal domain TOPB45_1470 PF17676 LD-carboxypeptidase C-terminal domain TOPB45_1471 PF03309 Type III pantothenate kinase TOPB45_1476 PF01842 ACT domain TOPB45_1476 PF01817 Chorismate mutase type II TOPB45_1476 PF00800 Prephenate dehydratase TOPB45_1478 PF13184 NusA-like KH domain TOPB45_1478 PF00575 S1 RNA binding domain TOPB45_1478 PF08529 NusA N-terminal domain TOPB45_1479 PF02576 RimP N-terminal domain TOPB45_1479 PF17384 RimP C-terminal SH3 domain TOPB45_1481 PF00083 Sugar (and other) transporter TOPB45_1482 PF00689 Cation transporting ATPase, C-terminus TOPB45_1482 PF00690 Cation transporter/ATPase, N-terminus TOPB45_1485 PF00712 DNA polymerase III beta subunit, N-terminal domain TOPB45_1485 PF02767 DNA polymerase III beta subunit, central domain TOPB45_1485 PF02768 DNA polymerase III beta subunit, C-terminal domain TOPB45_1486 PF00204 DNA gyrase B TOPB45_1486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_1486 PF01751 Toprim domain TOPB45_1486 PF00986 DNA gyrase B subunit, carboxyl terminus TOPB45_1489 PF03916 Polysulphide reductase, NrfD TOPB45_1490 PF13247 4Fe-4S dicluster domain TOPB45_1492 PF02085 Class III cytochrome C family TOPB45_1496 PF17760 UvrA interaction domain TOPB45_1496 PF17755 UvrA DNA-binding domain TOPB45_1496 PF00005 ABC transporter TOPB45_1497 PF14716 Helix-hairpin-helix domain TOPB45_1497 PF14791 DNA polymerase beta thumb TOPB45_1497 PF02811 PHP domain TOPB45_1498 PF00768 D-alanyl-D-alanine carboxypeptidase TOPB45_1498 PF07943 Penicillin-binding protein 5, C-terminal domain TOPB45_1499 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TOPB45_1499 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TOPB45_1499 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TOPB45_1500 PF00753 Metallo-beta-lactamase superfamily TOPB45_1501 PF01202 Shikimate kinase TOPB45_1503 PF01488 Shikimate / quinate 5-dehydrogenase TOPB45_1503 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TOPB45_1503 PF08501 Shikimate dehydrogenase substrate binding domain TOPB45_1504 PF01487 Type I 3-dehydroquinase TOPB45_1505 PF01808 AICARFT/IMPCHase bienzyme TOPB45_1505 PF02142 MGS-like domain TOPB45_1506 PF13186 Iron-sulfur cluster-binding domain TOPB45_1506 PF04055 Radical SAM superfamily TOPB45_1507 PF00072 Response regulator receiver domain TOPB45_1507 PF00486 Transcriptional regulatory protein, C terminal TOPB45_1508 PF06689 ClpX C4-type zinc finger TOPB45_1508 PF07724 AAA domain (Cdc48 subfamily) TOPB45_1508 PF10431 C-terminal, D2-small domain, of ClpB protein TOPB45_1509 PF17764 3′ DNA-binding domain (3′BD) TOPB45_1509 PF18074 Primosomal protein N C-terminal domain TOPB45_1509 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TOPB45_1509 PF04851 Type III restriction enzyme, res subunit TOPB45_1509 PF00271 Helicase conserved C-terminal domain TOPB45_1510 PF00483 Nucleotidyl transferase TOPB45_1512 PF00437 Type II/IV secretion system protein TOPB45_1513 PF00437 Type II/IV secretion system protein TOPB45_1517 PF02637 GatB domain TOPB45_1517 PF02934 GatB/GatE catalytic domain TOPB45_1518 PF01008 Initiation factor 2 subunit family TOPB45_1519 PF02629 CoA binding domain TOPB45_1519 PF06971 Putative DNA-binding protein N-terminus TOPB45_1520 PF00692 dUTPase TOPB45_1521 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TOPB45_1521 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TOPB45_1524 PF10531 SLBB domain TOPB45_1525 PF04358 DsrC like protein TOPB45_1526 PF14698 Argininosuccinate lyase C-terminal TOPB45_1526 PF00206 Lyase TOPB45_1526 PF00583 Acetyltransferase (GNAT) family TOPB45_1528 PF03485 Arginyl tRNA synthetase N terminal domain TOPB45_1528 PF05746 DALR anticodon binding domain TOPB45_1528 PF00750 tRNA synthetases class I (R) TOPB45_1530 PF00849 RNA pseudouridylate synthase TOPB45_1530 PF01479 S4 domain TOPB45_1532 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TOPB45_1533 PF00012 Hsp70 protein TOPB45_1534 PF01025 GrpE TOPB45_1535 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TOPB45_1535 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TOPB45_1536 PF01368 DHH family TOPB45_1536 PF02833 DHHA2 domain TOPB45_1538 PF01618 MotA/TolQ/ExbB proton channel family TOPB45_1539 PF13677 Membrane MotB of proton-channel complex MotA/MotB TOPB45_1539 PF00691 OmpA family TOPB45_1540 PF01926 50S ribosome-binding GTPase TOPB45_1540 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TOPB45_1543 PF01168 Alanine racemase, N-terminal domain TOPB45_1545 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TOPB45_1545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TOPB45_1546 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOPB45_1546 PF02874 ATP synthase alpha/beta family, beta-barrel domain TOPB45_1547 PF00231 ATP synthase TOPB45_1548 PF02874 ATP synthase alpha/beta family, beta-barrel domain TOPB45_1548 PF00306 ATP synthase alpha/beta chain, C terminal domain TOPB45_1548 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOPB45_1549 PF00213 ATP synthase delta (OSCP) subunit TOPB45_1552 PF01098 Cell cycle protein TOPB45_1553 PF00905 Penicillin binding protein transpeptidase domain TOPB45_1553 PF03717 Penicillin-binding Protein dimerisation domain TOPB45_1555 PF04085 rod shape-determining protein MreC TOPB45_1556 PF14821 Threonine synthase N terminus TOPB45_1556 PF00291 Pyridoxal-phosphate dependent enzyme TOPB45_1558 PF12706 Beta-lactamase superfamily domain TOPB45_1560 PF03841 L-seryl-tRNA selenium transferase TOPB45_1560 PF12390 Selenocysteine synthase N terminal TOPB45_1561 PF00155 Aminotransferase class I and II TOPB45_1562 PF00682 HMGL-like TOPB45_1565 PF07196 Flagellin hook IN motif TOPB45_1565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOPB45_1568 PF02119 Flagellar P-ring protein TOPB45_1569 PF02107 Flagellar L-ring protein TOPB45_1571 PF00460 Flagella basal body rod protein TOPB45_1571 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOPB45_1572 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOPB45_1572 PF00460 Flagella basal body rod protein TOPB45_1573 PF01103 Surface antigen TOPB45_1573 PF07244 Surface antigen variable number repeat TOPB45_1574 PF00005 ABC transporter TOPB45_1576 PF00152 tRNA synthetases class II (D, K and N) TOPB45_1576 PF01336 OB-fold nucleic acid binding domain TOPB45_1577 PF02899 Phage integrase, N-terminal SAM-like domain TOPB45_1577 PF00589 Phage integrase family TOPB45_1578 PF13188 PAS domain TOPB45_1578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPB45_1578 PF08448 PAS fold TOPB45_1578 PF00512 His Kinase A (phospho-acceptor) domain TOPB45_1578 PF00072 Response regulator receiver domain TOPB45_1580 PF00313 'Cold-shock' DNA-binding domain TOPB45_1582 PF14010 Phosphoenolpyruvate carboxylase TOPB45_1583 PF01264 Chorismate synthase TOPB45_1584 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TOPB45_1586 PF00330 Aconitase family (aconitate hydratase) TOPB45_1589 PF00117 Glutamine amidotransferase class-I TOPB45_1589 PF06418 CTP synthase N-terminus TOPB45_1591 PF02445 Quinolinate synthetase A protein TOPB45_1594 PF12072 Domain of unknown function (DUF3552) TOPB45_1594 PF00013 KH domain TOPB45_1594 PF01966 HD domain TOPB45_1595 PF13277 YmdB-like protein TOPB45_1596 PF01327 Polypeptide deformylase TOPB45_1598 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TOPB45_1600 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TOPB45_1600 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TOPB45_1601 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TOPB45_1604 PF06508 Queuosine biosynthesis protein QueC TOPB45_1606 PF01475 Ferric uptake regulator family TOPB45_1607 PF01784 NIF3 (NGG1p interacting factor 3) TOPB45_1609 PF01300 Telomere recombination TOPB45_1610 PF07992 Pyridine nucleotide-disulphide oxidoreductase TOPB45_1612 PF02910 Fumarate reductase flavoprotein C-term TOPB45_1612 PF00890 FAD binding domain TOPB45_1613 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TOPB45_1613 PF01676 Metalloenzyme superfamily TOPB45_1614 PF00902 Sec-independent protein translocase protein (TatC) TOPB45_1615 PF02416 mttA/Hcf106 family TOPB45_1616 PF01168 Alanine racemase, N-terminal domain TOPB45_1616 PF00842 Alanine racemase, C-terminal domain TOPB45_1617 PF07992 Pyridine nucleotide-disulphide oxidoreductase TOPB45_1618 PF03884 DNA gyrase inhibitor YacG TOPB45_1620 PF00206 Lyase TOPB45_1620 PF14698 Argininosuccinate lyase C-terminal TOPB45_1625 PF02082 Transcriptional regulator TOPB45_1626 PF02403 Seryl-tRNA synthetase N-terminal domain TOPB45_1626 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TOPB45_1627 PF00565 Staphylococcal nuclease homologue TOPB45_1629 PF02561 Flagellar protein FliS TOPB45_1632 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TOPB45_1632 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TOPB45_1634 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TOPB45_1634 PF00005 ABC transporter TOPB45_1635 PF00005 ABC transporter TOPB45_1635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region