locus-tag class description TDMWS_00020 PF13419 Haloacid dehalogenase-like hydrolase TDMWS_00040 PF00392 Bacterial regulatory proteins, gntR family TDMWS_00040 PF07702 UTRA domain TDMWS_00070 PF00563 EAL domain TDMWS_00070 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_00070 PF08447 PAS fold TDMWS_00070 PF08448 PAS fold TDMWS_00090 PF07715 TonB-dependent Receptor Plug Domain TDMWS_00090 PF00593 TonB dependent receptor TDMWS_00100 PF01209 ubiE/COQ5 methyltransferase family TDMWS_00120 PF00005 ABC transporter TDMWS_00120 PF02687 FtsX-like permease family TDMWS_00120 PF12704 MacB-like periplasmic core domain TDMWS_00170 PF01791 DeoC/LacD family aldolase TDMWS_00180 PF01959 3-dehydroquinate synthase II TDMWS_00190 PF01842 ACT domain TDMWS_00190 PF01817 Chorismate mutase type II TDMWS_00190 PF00800 Prephenate dehydratase TDMWS_00200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TDMWS_00210 PF01817 Chorismate mutase type II TDMWS_00210 PF02153 Prephenate dehydrogenase TDMWS_00220 PF04715 Anthranilate synthase component I, N terminal region TDMWS_00220 PF00425 chorismate binding enzyme TDMWS_00230 PF00117 Glutamine amidotransferase class-I TDMWS_00240 PF02885 Glycosyl transferase family, helical bundle domain TDMWS_00240 PF00591 Glycosyl transferase family, a/b domain TDMWS_00250 PF00218 Indole-3-glycerol phosphate synthase TDMWS_00260 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TDMWS_00270 PF00291 Pyridoxal-phosphate dependent enzyme TDMWS_00280 PF00290 Tryptophan synthase alpha chain TDMWS_00300 PF03951 Glutamine synthetase, beta-Grasp domain TDMWS_00300 PF00120 Glutamine synthetase, catalytic domain TDMWS_00310 PF00460 Flagella basal body rod protein TDMWS_00320 PF01430 Hsp33 protein TDMWS_00330 PF03749 Sugar fermentation stimulation protein RE domain TDMWS_00330 PF17746 SfsA N-terminal OB domain TDMWS_00340 PF02954 Bacterial regulatory protein, Fis family TDMWS_00340 PF06490 Flagellar regulatory protein FleQ TDMWS_00340 PF00158 Sigma-54 interaction domain TDMWS_00360 PF01875 Memo-like protein TDMWS_00370 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TDMWS_00370 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TDMWS_00380 PF03952 Enolase, N-terminal domain TDMWS_00380 PF00113 Enolase, C-terminal TIM barrel domain TDMWS_00390 PF03309 Type III pantothenate kinase TDMWS_00400 PF03966 Trm112p-like protein TDMWS_00410 PF01026 TatD related DNase TDMWS_00420 PF01321 Creatinase/Prolidase N-terminal domain TDMWS_00420 PF00557 Metallopeptidase family M24 TDMWS_00430 PF02649 Type I GTP cyclohydrolase folE2 TDMWS_00440 PF01402 Ribbon-helix-helix protein, copG family TDMWS_00440 PF08753 NikR C terminal nickel binding domain TDMWS_00460 PF00005 ABC transporter TDMWS_00470 PF00156 Phosphoribosyl transferase domain TDMWS_00480 PF02653 Branched-chain amino acid transport system / permease component TDMWS_00500 PF02608 ABC transporter substrate-binding protein PnrA-like TDMWS_00540 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TDMWS_00540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TDMWS_00550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDMWS_00550 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDMWS_00560 PF00231 ATP synthase TDMWS_00570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDMWS_00570 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDMWS_00570 PF00306 ATP synthase alpha/beta chain, C terminal domain TDMWS_00580 PF00213 ATP synthase delta (OSCP) subunit TDMWS_00590 PF00430 ATP synthase B/B' CF(0) TDMWS_00610 PF01098 Cell cycle protein TDMWS_00620 PF03717 Penicillin-binding Protein dimerisation domain TDMWS_00620 PF00905 Penicillin binding protein transpeptidase domain TDMWS_00640 PF04085 rod shape-determining protein MreC TDMWS_00660 PF04055 Radical SAM superfamily TDMWS_00660 PF16199 Radical_SAM C-terminal domain TDMWS_00690 PF00270 DEAD/DEAH box helicase TDMWS_00690 PF00271 Helicase conserved C-terminal domain TDMWS_00700 PF04055 Radical SAM superfamily TDMWS_00710 PF02677 Epoxyqueuosine reductase QueH TDMWS_00720 PF00575 S1 RNA binding domain TDMWS_00720 PF12111 Polyribonucleotide phosphorylase C terminal TDMWS_00720 PF10150 Ribonuclease E/G family TDMWS_00740 PF14535 AMP-binding enzyme C-terminal domain TDMWS_00740 PF00501 AMP-binding enzyme TDMWS_00760 PF06827 Zinc finger found in FPG and IleRS TDMWS_00760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TDMWS_00760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TDMWS_00770 PF12849 PBP superfamily domain TDMWS_00780 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_00790 PF00005 ABC transporter TDMWS_00810 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TDMWS_00810 PF00175 Oxidoreductase NAD-binding domain TDMWS_00850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TDMWS_00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_00880 PF05951 Bacterial protein of unknown function (DUF882) TDMWS_00920 PF01118 Semialdehyde dehydrogenase, NAD binding domain TDMWS_00920 PF02774 Semialdehyde dehydrogenase, dimerisation domain TDMWS_00930 PF02219 Methylenetetrahydrofolate reductase TDMWS_00940 PF00482 Type II secretion system (T2SS), protein F TDMWS_00950 PF00293 NUDIX domain TDMWS_00960 PF12848 ABC transporter TDMWS_00960 PF00005 ABC transporter TDMWS_00980 PF00535 Glycosyl transferase family 2 TDMWS_00990 PF14815 NUDIX domain TDMWS_00990 PF00730 HhH-GPD superfamily base excision DNA repair protein TDMWS_00990 PF00633 Helix-hairpin-helix motif TDMWS_01000 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_01020 PF00534 Glycosyl transferases group 1 TDMWS_01020 PF08323 Starch synthase catalytic domain TDMWS_01030 PF13344 Haloacid dehalogenase-like hydrolase TDMWS_01030 PF00293 NUDIX domain TDMWS_01040 PF09820 Predicted AAA-ATPase TDMWS_01040 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_01050 PF01300 Telomere recombination TDMWS_01070 PF02464 Competence-damaged protein TDMWS_01080 PF00881 Nitroreductase family TDMWS_01090 PF01522 Polysaccharide deacetylase TDMWS_01100 PF03425 Carbohydrate binding domain (family 11) TDMWS_01100 PF00150 Cellulase (glycosyl hydrolase family 5) TDMWS_01100 PF00404 Dockerin type I domain TDMWS_01100 PF02156 Glycosyl hydrolase family 26 TDMWS_01110 PF07516 SecA Wing and Scaffold domain TDMWS_01110 PF07517 SecA DEAD-like domain TDMWS_01110 PF01043 SecA preprotein cross-linking domain TDMWS_01110 PF02810 SEC-C motif TDMWS_01120 PF01668 SmpB protein TDMWS_01130 PF05524 PEP-utilising enzyme, N-terminal TDMWS_01130 PF02896 PEP-utilising enzyme, TIM barrel domain TDMWS_01130 PF00391 PEP-utilising enzyme, mobile domain TDMWS_01140 PF00381 PTS HPr component phosphorylation site TDMWS_01160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_01170 PF02021 Uncharacterised protein family UPF0102 TDMWS_01180 PF01351 Ribonuclease HII TDMWS_01190 PF01245 Ribosomal protein L19 TDMWS_01200 PF01746 tRNA (Guanine-1)-methyltransferase TDMWS_01200 PF09936 SAM-dependent RNA methyltransferase TDMWS_01210 PF01782 RimM N-terminal domain TDMWS_01210 PF05239 PRC-barrel domain TDMWS_01230 PF00886 Ribosomal protein S16 TDMWS_01240 PF00448 SRP54-type protein, GTPase domain TDMWS_01240 PF02978 Signal peptide binding domain TDMWS_01240 PF02881 SRP54-type protein, helical bundle domain TDMWS_01250 PF00155 Aminotransferase class I and II TDMWS_01260 PF00158 Sigma-54 interaction domain TDMWS_01260 PF02954 Bacterial regulatory protein, Fis family TDMWS_01270 PF00465 Iron-containing alcohol dehydrogenase TDMWS_01280 PF13426 PAS domain TDMWS_01280 PF13188 PAS domain TDMWS_01280 PF00989 PAS fold TDMWS_01280 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_01280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_01290 PF01464 Transglycosylase SLT domain TDMWS_01290 PF01476 LysM domain TDMWS_01300 PF08032 RNA 2'-O ribose methyltransferase substrate binding TDMWS_01300 PF00588 SpoU rRNA Methylase family TDMWS_01310 PF01313 Bacterial export proteins, family 3 TDMWS_01320 PF00813 FliP family TDMWS_01330 PF04347 Flagellar biosynthesis protein, FliO TDMWS_01340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDMWS_01350 PF02154 Flagellar motor switch protein FliM TDMWS_01350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDMWS_01360 PF03748 Flagellar basal body-associated protein FliL TDMWS_01370 PF13677 Membrane MotB of proton-channel complex MotA/MotB TDMWS_01370 PF00691 OmpA family TDMWS_01380 PF13677 Membrane MotB of proton-channel complex MotA/MotB TDMWS_01380 PF00691 OmpA family TDMWS_01390 PF01618 MotA/TolQ/ExbB proton channel family TDMWS_01400 PF01168 Alanine racemase, N-terminal domain TDMWS_01410 PF07650 KH domain TDMWS_01410 PF01926 50S ribosome-binding GTPase TDMWS_01420 PF01131 DNA topoisomerase TDMWS_01420 PF01751 Toprim domain TDMWS_01420 PF01396 Topoisomerase DNA binding C4 zinc finger TDMWS_01440 PF17768 RecJ OB domain TDMWS_01440 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TDMWS_01440 PF01368 DHH family TDMWS_01440 PF02272 DHHA1 domain TDMWS_01460 PF04055 Radical SAM superfamily TDMWS_01480 PF00586 AIR synthase related protein, N-terminal domain TDMWS_01480 PF02769 AIR synthase related protein, C-terminal domain TDMWS_01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TDMWS_01490 PF03466 LysR substrate binding domain TDMWS_01500 PF01196 Ribosomal protein L17 TDMWS_01510 PF01000 RNA polymerase Rpb3/RpoA insert domain TDMWS_01510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TDMWS_01510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TDMWS_01520 PF00163 Ribosomal protein S4/S9 N-terminal domain TDMWS_01520 PF01479 S4 domain TDMWS_01530 PF00411 Ribosomal protein S11 TDMWS_01540 PF00416 Ribosomal protein S13/S18 TDMWS_01550 PF00557 Metallopeptidase family M24 TDMWS_01560 PF00344 SecY translocase TDMWS_01570 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TDMWS_01580 PF00327 Ribosomal protein L30p/L7e TDMWS_01590 PF00333 Ribosomal protein S5, N-terminal domain TDMWS_01590 PF03719 Ribosomal protein S5, C-terminal domain TDMWS_01600 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TDMWS_01610 PF00347 Ribosomal protein L6 TDMWS_01620 PF00410 Ribosomal protein S8 TDMWS_01630 PF00281 Ribosomal protein L5 TDMWS_01630 PF00673 ribosomal L5P family C-terminus TDMWS_01640 PF00467 KOW motif TDMWS_01640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TDMWS_01650 PF00238 Ribosomal protein L14p/L23e TDMWS_01660 PF00366 Ribosomal protein S17 TDMWS_01670 PF00831 Ribosomal L29 protein TDMWS_01680 PF00252 Ribosomal protein L16p/L10e TDMWS_01690 PF07650 KH domain TDMWS_01690 PF00189 Ribosomal protein S3, C-terminal domain TDMWS_01700 PF00237 Ribosomal protein L22p/L17e TDMWS_01710 PF00203 Ribosomal protein S19 TDMWS_01720 PF03947 Ribosomal Proteins L2, C-terminal domain TDMWS_01720 PF00181 Ribosomal Proteins L2, RNA binding domain TDMWS_01730 PF00276 Ribosomal protein L23 TDMWS_01740 PF00573 Ribosomal protein L4/L1 family TDMWS_01750 PF00297 Ribosomal protein L3 TDMWS_01760 PF00338 Ribosomal protein S10p/S20e TDMWS_01770 PF00009 Elongation factor Tu GTP binding domain TDMWS_01770 PF03144 Elongation factor Tu domain 2 TDMWS_01770 PF03143 Elongation factor Tu C-terminal domain TDMWS_01780 PF00009 Elongation factor Tu GTP binding domain TDMWS_01780 PF03764 Elongation factor G, domain IV TDMWS_01780 PF03144 Elongation factor Tu domain 2 TDMWS_01780 PF00679 Elongation factor G C-terminus TDMWS_01780 PF14492 Elongation Factor G, domain II TDMWS_01790 PF00177 Ribosomal protein S7p/S5e TDMWS_01800 PF00164 Ribosomal protein S12/S23 TDMWS_01810 PF04997 RNA polymerase Rpb1, domain 1 TDMWS_01810 PF00623 RNA polymerase Rpb1, domain 2 TDMWS_01810 PF04983 RNA polymerase Rpb1, domain 3 TDMWS_01810 PF05000 RNA polymerase Rpb1, domain 4 TDMWS_01810 PF04998 RNA polymerase Rpb1, domain 5 TDMWS_01820 PF04561 RNA polymerase Rpb2, domain 2 TDMWS_01820 PF04565 RNA polymerase Rpb2, domain 3 TDMWS_01820 PF04560 RNA polymerase Rpb2, domain 7 TDMWS_01820 PF00562 RNA polymerase Rpb2, domain 6 TDMWS_01820 PF04563 RNA polymerase beta subunit TDMWS_01820 PF10385 RNA polymerase beta subunit external 1 domain TDMWS_01830 PF00542 Ribosomal protein L7/L12 C-terminal domain TDMWS_01830 PF16320 Ribosomal protein L7/L12 dimerisation domain TDMWS_01840 PF00466 Ribosomal protein L10 TDMWS_01850 PF00687 Ribosomal protein L1p/L10e family TDMWS_01860 PF00298 Ribosomal protein L11, RNA binding domain TDMWS_01860 PF03946 Ribosomal protein L11, N-terminal domain TDMWS_01870 PF02357 Transcription termination factor nusG TDMWS_01870 PF00467 KOW motif TDMWS_01890 PF00471 Ribosomal protein L33 TDMWS_01900 PF03143 Elongation factor Tu C-terminal domain TDMWS_01900 PF03144 Elongation factor Tu domain 2 TDMWS_01900 PF00009 Elongation factor Tu GTP binding domain TDMWS_01910 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TDMWS_01920 PF17827 PrmC N-terminal domain TDMWS_01920 PF05175 Methyltransferase small domain TDMWS_01930 PF00472 RF-1 domain TDMWS_01930 PF03462 PCRF domain TDMWS_01940 PF01197 Ribosomal protein L31 TDMWS_01950 PF02629 CoA binding domain TDMWS_01950 PF06971 Putative DNA-binding protein N-terminus TDMWS_01960 PF00137 ATP synthase subunit C TDMWS_01970 PF00119 ATP synthase A chain TDMWS_01990 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter TDMWS_02000 PF13654 AAA domain TDMWS_02000 PF05362 Lon protease (S16) C-terminal proteolytic domain TDMWS_02030 PF04751 Protein of unknown function (DUF615) TDMWS_02040 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TDMWS_02050 PF10431 C-terminal, D2-small domain, of ClpB protein TDMWS_02050 PF17871 AAA lid domain TDMWS_02050 PF07724 AAA domain (Cdc48 subfamily) TDMWS_02050 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_02050 PF02861 Clp amino terminal domain, pathogenicity island component TDMWS_02060 PF02617 ATP-dependent Clp protease adaptor protein ClpS TDMWS_02080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDMWS_02080 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_02110 PF02254 TrkA-N domain TDMWS_02110 PF07885 Ion channel TDMWS_02120 PF01451 Low molecular weight phosphotyrosine protein phosphatase TDMWS_02130 PF01758 Sodium Bile acid symporter family TDMWS_02150 PF01784 NIF3 (NGG1p interacting factor 3) TDMWS_02170 PF02542 YgbB family TDMWS_02170 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TDMWS_02180 PF00749 tRNA synthetases class I (E and Q), catalytic domain TDMWS_02190 PF09190 DALR domain TDMWS_02190 PF01406 tRNA synthetases class I (C) catalytic domain TDMWS_02200 PF03099 Biotin/lipoate A/B protein ligase family TDMWS_02300 PF01381 Helix-turn-helix TDMWS_02320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDMWS_02340 PF02001 Protein of unknown function DUF134 TDMWS_02350 PF02001 Protein of unknown function DUF134 TDMWS_02370 PF13732 Domain of unknown function (DUF4162) TDMWS_02370 PF00005 ABC transporter TDMWS_02400 PF00012 Hsp70 protein TDMWS_02410 PF00300 Histidine phosphatase superfamily (branch 1) TDMWS_02420 PF04011 LemA family TDMWS_02450 PF02686 Glu-tRNAGln amidotransferase C subunit TDMWS_02460 PF01425 Amidase TDMWS_02480 PF04055 Radical SAM superfamily TDMWS_02480 PF00919 Uncharacterized protein family UPF0004 TDMWS_02500 PF08340 Domain of unknown function (DUF1732) TDMWS_02500 PF03755 YicC-like family, N-terminal region TDMWS_02510 PF04025 Domain of unknown function (DUF370) TDMWS_02520 PF00625 Guanylate kinase TDMWS_02530 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TDMWS_02560 PF04349 Periplasmic glucan biosynthesis protein, MdoG TDMWS_02570 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_02570 PF09820 Predicted AAA-ATPase TDMWS_02580 PF00873 AcrB/AcrD/AcrF family TDMWS_02590 PF00529 HlyD membrane-fusion protein of T1SS TDMWS_02590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TDMWS_02600 PF00072 Response regulator receiver domain TDMWS_02600 PF00486 Transcriptional regulatory protein, C terminal TDMWS_02610 PF01590 GAF domain TDMWS_02610 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_02610 PF00360 Phytochrome region TDMWS_02610 PF00563 EAL domain TDMWS_02620 PF00005 ABC transporter TDMWS_02640 PF02463 RecF/RecN/SMC N terminal domain TDMWS_02650 PF00175 Oxidoreductase NAD-binding domain TDMWS_02650 PF00970 Oxidoreductase FAD-binding domain TDMWS_02650 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TDMWS_02660 PF01180 Dihydroorotate dehydrogenase TDMWS_02720 PF00909 Ammonium Transporter Family TDMWS_02730 PF00543 Nitrogen regulatory protein P-II TDMWS_02740 PF01966 HD domain TDMWS_02740 PF01909 Nucleotidyltransferase domain TDMWS_02740 PF08335 GlnD PII-uridylyltransferase TDMWS_02750 PF01925 Sulfite exporter TauE/SafE TDMWS_02790 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_02790 PF05362 Lon protease (S16) C-terminal proteolytic domain TDMWS_02790 PF02190 ATP-dependent protease La (LON) substrate-binding domain TDMWS_02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_02800 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_02800 PF13188 PAS domain TDMWS_02800 PF08448 PAS fold TDMWS_02800 PF00072 Response regulator receiver domain TDMWS_02810 PF02954 Bacterial regulatory protein, Fis family TDMWS_02810 PF00072 Response regulator receiver domain TDMWS_02810 PF00158 Sigma-54 interaction domain TDMWS_02820 PF01451 Low molecular weight phosphotyrosine protein phosphatase TDMWS_02830 PF00437 Type II/IV secretion system protein TDMWS_02830 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TDMWS_02840 PF01467 Cytidylyltransferase-like TDMWS_02840 PF00294 pfkB family carbohydrate kinase TDMWS_02870 PF04127 DNA / pantothenate metabolism flavoprotein TDMWS_02870 PF02441 Flavoprotein TDMWS_02890 PF01370 NAD dependent epimerase/dehydratase family TDMWS_02900 PF13614 AAA domain TDMWS_02920 PF17762 HTH domain found in ParB protein TDMWS_02920 PF02195 ParB-like nuclease domain TDMWS_02930 PF00294 pfkB family carbohydrate kinase TDMWS_02930 PF01467 Cytidylyltransferase-like TDMWS_02960 PF00924 Mechanosensitive ion channel TDMWS_02960 PF12795 Mechanosensitive ion channel porin domain TDMWS_02960 PF12794 Mechanosensitive ion channel inner membrane domain 1 TDMWS_02980 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_02980 PF09820 Predicted AAA-ATPase TDMWS_02990 PF01926 50S ribosome-binding GTPase TDMWS_02990 PF06071 Protein of unknown function (DUF933) TDMWS_03000 PF00588 SpoU rRNA Methylase family TDMWS_03030 PF00909 Ammonium Transporter Family TDMWS_03040 PF00543 Nitrogen regulatory protein P-II TDMWS_03070 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_03070 PF09820 Predicted AAA-ATPase TDMWS_03080 PF01588 Putative tRNA binding domain TDMWS_03080 PF09334 tRNA synthetases class I (M) TDMWS_03080 PF00133 tRNA synthetases class I (I, L, M and V) TDMWS_03090 PF04468 PSP1 C-terminal conserved region TDMWS_03100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDMWS_03100 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_03110 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TDMWS_03110 PF00970 Oxidoreductase FAD-binding domain TDMWS_03110 PF00175 Oxidoreductase NAD-binding domain TDMWS_03120 PF02272 DHHA1 domain TDMWS_03120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDMWS_03120 PF01411 tRNA synthetases class II (A) TDMWS_03130 PF00154 recA bacterial DNA recombination protein TDMWS_03140 PF02926 THUMP domain TDMWS_03140 PF02568 Thiamine biosynthesis protein (ThiI) TDMWS_03150 PF01026 TatD related DNase TDMWS_03160 PF00899 ThiF family TDMWS_03180 PF00675 Insulinase (Peptidase family M16) TDMWS_03180 PF05193 Peptidase M16 inactive domain TDMWS_03180 PF16187 Middle or third domain of peptidase_M16 TDMWS_03190 PF10672 S-adenosylmethionine-dependent methyltransferase TDMWS_03190 PF17785 PUA-like domain TDMWS_03210 PF00849 RNA pseudouridylate synthase TDMWS_03210 PF01479 S4 domain TDMWS_03220 PF01189 16S rRNA methyltransferase RsmB/F TDMWS_03220 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TDMWS_03220 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TDMWS_03230 PF01791 DeoC/LacD family aldolase TDMWS_03240 PF01274 Malate synthase TDMWS_03270 PF00920 Dehydratase family TDMWS_03280 PF02687 FtsX-like permease family TDMWS_03280 PF18075 FtsX extracellular domain TDMWS_03290 PF00005 ABC transporter TDMWS_03300 PF03477 ATP cone domain TDMWS_03300 PF02867 Ribonucleotide reductase, barrel domain TDMWS_03300 PF00317 Ribonucleotide reductase, all-alpha domain TDMWS_03310 PF00994 Probable molybdopterin binding domain TDMWS_03320 PF13188 PAS domain TDMWS_03320 PF13426 PAS domain TDMWS_03320 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_03320 PF00989 PAS fold TDMWS_03330 PF13361 UvrD-like helicase C-terminal domain TDMWS_03330 PF00580 UvrD/REP helicase N-terminal domain TDMWS_03370 PF09281 Taq polymerase, exonuclease TDMWS_03370 PF00476 DNA polymerase family A TDMWS_03370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TDMWS_03370 PF01367 5'-3' exonuclease, C-terminal SAM fold TDMWS_03380 PF00266 Aminotransferase class-V TDMWS_03400 PF01118 Semialdehyde dehydrogenase, NAD binding domain TDMWS_03400 PF02774 Semialdehyde dehydrogenase, dimerisation domain TDMWS_03410 PF08668 HDOD domain TDMWS_03410 PF00563 EAL domain TDMWS_03420 PF01478 Type IV leader peptidase family TDMWS_03420 PF06750 Bacterial Peptidase A24 N-terminal domain TDMWS_03430 PF00361 Proton-conducting membrane transporter TDMWS_03430 PF13244 Domain of unknown function (DUF4040) TDMWS_03430 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TDMWS_03440 PF00146 NADH dehydrogenase TDMWS_03450 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TDMWS_03470 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TDMWS_03470 PF00374 Nickel-dependent hydrogenase TDMWS_03490 PF01965 DJ-1/PfpI family TDMWS_03500 PF13193 AMP-binding enzyme C-terminal domain TDMWS_03500 PF16177 Acetyl-coenzyme A synthetase N-terminus TDMWS_03500 PF00501 AMP-binding enzyme TDMWS_03510 PF04397 LytTr DNA-binding domain TDMWS_03510 PF00072 Response regulator receiver domain TDMWS_03530 PF06421 GTP-binding protein LepA C-terminus TDMWS_03530 PF03144 Elongation factor Tu domain 2 TDMWS_03530 PF00009 Elongation factor Tu GTP binding domain TDMWS_03530 PF14492 Elongation Factor G, domain II TDMWS_03530 PF00679 Elongation factor G C-terminus TDMWS_03540 PF10502 Signal peptidase, peptidase S26 TDMWS_03550 PF13335 Magnesium chelatase, subunit ChlI C-terminal TDMWS_03550 PF01078 Magnesium chelatase, subunit ChlI TDMWS_03560 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TDMWS_03560 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TDMWS_03610 PF00403 Heavy-metal-associated domain TDMWS_03630 PF01627 Hpt domain TDMWS_03630 PF00072 Response regulator receiver domain TDMWS_03630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_03630 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_03650 PF00890 FAD binding domain TDMWS_03650 PF02910 Fumarate reductase flavoprotein C-term TDMWS_03660 PF13085 2Fe-2S iron-sulfur cluster binding domain TDMWS_03660 PF13183 4Fe-4S dicluster domain TDMWS_03670 PF05681 Fumarate hydratase (Fumerase) TDMWS_03690 PF00390 Malic enzyme, N-terminal domain TDMWS_03690 PF01515 Phosphate acetyl/butaryl transferase TDMWS_03690 PF03949 Malic enzyme, NAD binding domain TDMWS_03700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TDMWS_03700 PF00117 Glutamine amidotransferase class-I TDMWS_03710 PF01136 Peptidase family U32 TDMWS_03720 PF00291 Pyridoxal-phosphate dependent enzyme TDMWS_03730 PF00361 Proton-conducting membrane transporter TDMWS_03760 PF00361 Proton-conducting membrane transporter TDMWS_03760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TDMWS_03770 PF00374 Nickel-dependent hydrogenase TDMWS_03770 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TDMWS_03770 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TDMWS_03780 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TDMWS_03800 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_03800 PF09820 Predicted AAA-ATPase TDMWS_03830 PF00873 AcrB/AcrD/AcrF family TDMWS_03850 PF00155 Aminotransferase class I and II TDMWS_03870 PF03591 AzlC protein TDMWS_03880 PF00155 Aminotransferase class I and II TDMWS_03880 PF00392 Bacterial regulatory proteins, gntR family TDMWS_03900 PF00733 Asparagine synthase TDMWS_03900 PF13537 Glutamine amidotransferase domain TDMWS_03920 PF07196 Flagellin hook IN motif TDMWS_03920 PF07195 Flagellar hook-associated protein 2 C-terminus TDMWS_03920 PF02465 Flagellar hook-associated protein 2 N-terminus TDMWS_03930 PF00700 Bacterial flagellin C-terminal helical region TDMWS_03930 PF00669 Bacterial flagellin N-terminal helical region TDMWS_03950 PF17820 PDZ domain TDMWS_03950 PF02163 Peptidase family M50 TDMWS_03960 PF13288 DXP reductoisomerase C-terminal domain TDMWS_03960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TDMWS_03960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TDMWS_03980 PF01255 Putative undecaprenyl diphosphate synthase TDMWS_03990 PF01765 Ribosome recycling factor TDMWS_04000 PF00696 Amino acid kinase family TDMWS_04010 PF00889 Elongation factor TS TDMWS_04020 PF00318 Ribosomal protein S2 TDMWS_04040 PF06574 FAD synthetase TDMWS_04040 PF01687 Riboflavin kinase TDMWS_04060 PF01618 MotA/TolQ/ExbB proton channel family TDMWS_04090 PF07690 Major Facilitator Superfamily TDMWS_04100 PF13533 Biotin-lipoyl like TDMWS_04130 PF00679 Elongation factor G C-terminus TDMWS_04130 PF14492 Elongation Factor G, domain II TDMWS_04130 PF03764 Elongation factor G, domain IV TDMWS_04130 PF03144 Elongation factor Tu domain 2 TDMWS_04130 PF00009 Elongation factor Tu GTP binding domain TDMWS_04140 PF00753 Metallo-beta-lactamase superfamily TDMWS_04140 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TDMWS_04140 PF17770 Ribonuclease J C-terminal domain TDMWS_04150 PF02321 Outer membrane efflux protein TDMWS_04160 PF00529 HlyD membrane-fusion protein of T1SS TDMWS_04160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TDMWS_04170 PF00664 ABC transporter transmembrane region TDMWS_04170 PF00005 ABC transporter TDMWS_04180 PF01565 FAD binding domain TDMWS_04180 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TDMWS_04190 PF02082 Transcriptional regulator TDMWS_04200 PF01960 ArgJ family TDMWS_04240 PF09312 SurA N-terminal domain TDMWS_04250 PF00330 Aconitase family (aconitate hydratase) TDMWS_04280 PF09820 Predicted AAA-ATPase TDMWS_04280 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_04300 PF01029 NusB family TDMWS_04300 PF01189 16S rRNA methyltransferase RsmB/F TDMWS_04320 PF02911 Formyl transferase, C-terminal domain TDMWS_04320 PF00551 Formyl transferase TDMWS_04340 PF01327 Polypeptide deformylase TDMWS_04350 PF02938 GAD domain TDMWS_04350 PF00152 tRNA synthetases class II (D, K and N) TDMWS_04350 PF01336 OB-fold nucleic acid binding domain TDMWS_04360 PF03129 Anticodon binding domain TDMWS_04360 PF13393 Histidyl-tRNA synthetase TDMWS_04400 PF01725 Ham1 family TDMWS_04410 PF01380 SIS domain TDMWS_04420 PF01520 N-acetylmuramoyl-L-alanine amidase TDMWS_04430 PF04474 Protein of unknown function (DUF554) TDMWS_04440 PF00072 Response regulator receiver domain TDMWS_04440 PF00486 Transcriptional regulatory protein, C terminal TDMWS_04450 PF00072 Response regulator receiver domain TDMWS_04450 PF00486 Transcriptional regulatory protein, C terminal TDMWS_04460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_04460 PF12729 Four helix bundle sensory module for signal transduction TDMWS_04460 PF00672 HAMP domain TDMWS_04470 PF02464 Competence-damaged protein TDMWS_04470 PF00994 Probable molybdopterin binding domain TDMWS_04480 PF00384 Molybdopterin oxidoreductase TDMWS_04480 PF01568 Molydopterin dinucleotide binding domain TDMWS_04480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TDMWS_04500 PF13247 4Fe-4S dicluster domain TDMWS_04520 PF00085 Thioredoxin TDMWS_04530 PF01022 Bacterial regulatory protein, arsR family TDMWS_04570 PF01790 Prolipoprotein diacylglyceryl transferase TDMWS_04590 PF05036 Sporulation related domain TDMWS_04590 PF03330 Lytic transglycolase TDMWS_04600 PF00216 Bacterial DNA-binding protein TDMWS_04620 PF00919 Uncharacterized protein family UPF0004 TDMWS_04620 PF04055 Radical SAM superfamily TDMWS_04620 PF18693 TRAM domain TDMWS_04630 PF00575 S1 RNA binding domain TDMWS_04640 PF04055 Radical SAM superfamily TDMWS_04660 PF00128 Alpha amylase, catalytic domain TDMWS_04660 PF02806 Alpha amylase, C-terminal all-beta domain TDMWS_04660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TDMWS_04670 PF02446 4-alpha-glucanotransferase TDMWS_04680 PF04358 DsrC like protein TDMWS_04700 PF13396 Phospholipase_D-nuclease N-terminal TDMWS_04700 PF13091 PLD-like domain TDMWS_04720 PF01747 ATP-sulfurylase TDMWS_04720 PF14306 PUA-like domain TDMWS_04730 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit TDMWS_04730 PF13187 4Fe-4S dicluster domain TDMWS_04740 PF00890 FAD binding domain TDMWS_04750 PF01593 Flavin containing amine oxidoreductase TDMWS_04760 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_04760 PF18113 Rubredoxin binding C-terminal domain TDMWS_04800 PF13247 4Fe-4S dicluster domain TDMWS_04800 PF12800 4Fe-4S binding domain TDMWS_04810 PF01292 Prokaryotic cytochrome b561 TDMWS_04830 PF00672 HAMP domain TDMWS_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_04840 PF00005 ABC transporter TDMWS_04850 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDMWS_04850 PF00005 ABC transporter TDMWS_04860 PF11862 Domain of unknown function (DUF3382) TDMWS_04860 PF02653 Branched-chain amino acid transport system / permease component TDMWS_04870 PF02653 Branched-chain amino acid transport system / permease component TDMWS_04880 PF13458 Periplasmic binding protein TDMWS_04890 PF00171 Aldehyde dehydrogenase family TDMWS_04900 PF01037 Lrp/AsnC ligand binding domain TDMWS_04910 PF00834 Ribulose-phosphate 3 epimerase family TDMWS_04920 PF13404 AsnC-type helix-turn-helix domain TDMWS_04920 PF17805 AsnC-like ligand binding domain TDMWS_04930 PF13186 Iron-sulfur cluster-binding domain TDMWS_04930 PF04055 Radical SAM superfamily TDMWS_04940 PF00490 Delta-aminolevulinic acid dehydratase TDMWS_04950 PF04055 Radical SAM superfamily TDMWS_04950 PF13186 Iron-sulfur cluster-binding domain TDMWS_04980 PF01134 Glucose inhibited division protein A TDMWS_04990 PF02660 Glycerol-3-phosphate acyltransferase TDMWS_05000 PF17876 Cold shock domain TDMWS_05000 PF08206 Ribonuclease B OB domain TDMWS_05000 PF00575 S1 RNA binding domain TDMWS_05000 PF00773 RNB domain TDMWS_05010 PF01808 AICARFT/IMPCHase bienzyme TDMWS_05010 PF02142 MGS-like domain TDMWS_05020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_05020 PF00672 HAMP domain TDMWS_05020 PF12729 Four helix bundle sensory module for signal transduction TDMWS_05030 PF10388 EAL-domain associated signalling protein domain TDMWS_05030 PF00563 EAL domain TDMWS_05130 PF09827 CRISPR associated protein Cas2 TDMWS_05140 PF01867 CRISPR associated protein Cas1 TDMWS_05160 PF09820 Predicted AAA-ATPase TDMWS_05160 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_05250 PF18389 TrmO C-terminal domain TDMWS_05250 PF01980 tRNA-methyltransferase O TDMWS_05260 PF02401 LytB protein TDMWS_05270 PF01207 Dihydrouridine synthase (Dus) TDMWS_05310 PF00072 Response regulator receiver domain TDMWS_05320 PF04542 Sigma-70 region 2 TDMWS_05320 PF04539 Sigma-70 region 3 TDMWS_05320 PF04545 Sigma-70, region 4 TDMWS_05330 PF10609 NUBPL iron-transfer P-loop NTPase TDMWS_05350 PF00771 FHIPEP family TDMWS_05360 PF01312 FlhB HrpN YscU SpaS Family TDMWS_05370 PF01311 Bacterial export proteins, family 1 TDMWS_05380 PF01171 PP-loop family TDMWS_05390 PF01192 RNA polymerase Rpb6 TDMWS_05400 PF00226 DnaJ domain TDMWS_05400 PF01556 DnaJ C terminal domain TDMWS_05400 PF00684 DnaJ central domain TDMWS_05410 PF01967 MoaC family TDMWS_05420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDMWS_05420 PF02403 Seryl-tRNA synthetase N-terminal domain TDMWS_05430 PF00166 Chaperonin 10 Kd subunit TDMWS_05440 PF00118 TCP-1/cpn60 chaperonin family TDMWS_05490 PF01750 Hydrogenase maturation protease TDMWS_05500 PF00374 Nickel-dependent hydrogenase TDMWS_05510 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TDMWS_05510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TDMWS_05530 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TDMWS_05530 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TDMWS_05540 PF00374 Nickel-dependent hydrogenase TDMWS_05550 PF01750 Hydrogenase maturation protease TDMWS_05560 PF01455 HupF/HypC family TDMWS_05570 PF17862 AAA+ lid domain TDMWS_05570 PF01434 Peptidase family M41 TDMWS_05570 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_05590 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_05590 PF13192 Thioredoxin domain TDMWS_05600 PF03453 MoeA N-terminal region (domain I and II) TDMWS_05600 PF00994 Probable molybdopterin binding domain TDMWS_05600 PF03454 MoeA C-terminal region (domain IV) TDMWS_05610 PF03453 MoeA N-terminal region (domain I and II) TDMWS_05610 PF03454 MoeA C-terminal region (domain IV) TDMWS_05610 PF00994 Probable molybdopterin binding domain TDMWS_05640 PF12804 MobA-like NTP transferase domain TDMWS_05640 PF01967 MoaC family TDMWS_05680 PF14535 AMP-binding enzyme C-terminal domain TDMWS_05680 PF00501 AMP-binding enzyme TDMWS_05690 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDMWS_05690 PF00005 ABC transporter TDMWS_05700 PF02653 Branched-chain amino acid transport system / permease component TDMWS_05710 PF02653 Branched-chain amino acid transport system / permease component TDMWS_05760 PF08029 HisG, C-terminal domain TDMWS_05760 PF01634 ATP phosphoribosyltransferase TDMWS_05770 PF01502 Phosphoribosyl-AMP cyclohydrolase TDMWS_05780 PF04055 Radical SAM superfamily TDMWS_05790 PF01966 HD domain TDMWS_05790 PF12627 Probable RNA and SrmB- binding site of polymerase A TDMWS_05790 PF01743 Poly A polymerase head domain TDMWS_05800 PF00072 Response regulator receiver domain TDMWS_05800 PF00158 Sigma-54 interaction domain TDMWS_05800 PF02954 Bacterial regulatory protein, Fis family TDMWS_05810 PF01979 Amidohydrolase family TDMWS_05820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TDMWS_05820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TDMWS_05830 PF00005 ABC transporter TDMWS_05830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDMWS_05840 PF00005 ABC transporter TDMWS_05840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDMWS_05850 PF12911 N-terminal TM domain of oligopeptide transport permease C TDMWS_05850 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_05860 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_05870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDMWS_05890 PF13247 4Fe-4S dicluster domain TDMWS_05890 PF14711 Respiratory nitrate reductase beta C-terminal TDMWS_05900 PF01568 Molydopterin dinucleotide binding domain TDMWS_05900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TDMWS_05900 PF00384 Molybdopterin oxidoreductase TDMWS_05910 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_05910 PF09820 Predicted AAA-ATPase TDMWS_05920 PF00483 Nucleotidyl transferase TDMWS_05940 PF03989 DNA gyrase C-terminal domain, beta-propeller TDMWS_05940 PF00521 DNA gyrase/topoisomerase IV, subunit A TDMWS_05950 PF18053 DNA gyrase B subunit insert domain TDMWS_05950 PF00986 DNA gyrase B subunit, carboxyl terminus TDMWS_05950 PF01751 Toprim domain TDMWS_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_05950 PF00204 DNA gyrase B TDMWS_05970 PF00308 Bacterial dnaA protein TDMWS_05970 PF08299 Bacterial dnaA protein helix-turn-helix TDMWS_06020 PF10397 Adenylosuccinate lyase C-terminus TDMWS_06020 PF00206 Lyase TDMWS_06050 PF00753 Metallo-beta-lactamase superfamily TDMWS_06080 PF00156 Phosphoribosyl transferase domain TDMWS_06090 PF00072 Response regulator receiver domain TDMWS_06090 PF00486 Transcriptional regulatory protein, C terminal TDMWS_06110 PF00892 EamA-like transporter family TDMWS_06120 PF01209 ubiE/COQ5 methyltransferase family TDMWS_06130 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TDMWS_06130 PF05221 S-adenosyl-L-homocysteine hydrolase TDMWS_06140 PF00438 S-adenosylmethionine synthetase, N-terminal domain TDMWS_06140 PF02772 S-adenosylmethionine synthetase, central domain TDMWS_06140 PF02773 S-adenosylmethionine synthetase, C-terminal domain TDMWS_06150 PF02685 Glucokinase TDMWS_06170 PF00860 Permease family TDMWS_06180 PF01925 Sulfite exporter TauE/SafE TDMWS_06190 PF00005 ABC transporter TDMWS_06220 PF01891 Cobalt uptake substrate-specific transmembrane region TDMWS_06240 PF00709 Adenylosuccinate synthetase TDMWS_06250 PF09115 DNA polymerase III, delta subunit, C terminal TDMWS_06270 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TDMWS_06280 PF00224 Pyruvate kinase, barrel domain TDMWS_06280 PF02887 Pyruvate kinase, alpha/beta domain TDMWS_06290 PF01814 Hemerythrin HHE cation binding domain TDMWS_06300 PF02769 AIR synthase related protein, C-terminal domain TDMWS_06300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TDMWS_06300 PF00586 AIR synthase related protein, N-terminal domain TDMWS_06320 PF00348 Polyprenyl synthetase TDMWS_06330 PF02621 Menaquinone biosynthesis TDMWS_06340 PF01048 Phosphorylase superfamily TDMWS_06350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TDMWS_06350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TDMWS_06350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TDMWS_06370 PF01209 ubiE/COQ5 methyltransferase family TDMWS_06400 PF02085 Class III cytochrome C family TDMWS_06410 PF00202 Aminotransferase class-III TDMWS_06420 PF17805 AsnC-like ligand binding domain TDMWS_06430 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TDMWS_06430 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TDMWS_06440 PF01894 Uncharacterised protein family UPF0047 TDMWS_06460 PF00486 Transcriptional regulatory protein, C terminal TDMWS_06460 PF00072 Response regulator receiver domain TDMWS_06470 PF03129 Anticodon binding domain TDMWS_06470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDMWS_06470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDMWS_06480 PF05198 Translation initiation factor IF-3, N-terminal domain TDMWS_06480 PF00707 Translation initiation factor IF-3, C-terminal domain TDMWS_06490 PF01632 Ribosomal protein L35 TDMWS_06500 PF00453 Ribosomal protein L20 TDMWS_06510 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TDMWS_06510 PF01409 tRNA synthetases class II core domain (F) TDMWS_06520 PF03483 B3/4 domain TDMWS_06520 PF03147 Ferredoxin-fold anticodon binding domain TDMWS_06520 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TDMWS_06520 PF03484 tRNA synthetase B5 domain TDMWS_06520 PF01588 Putative tRNA binding domain TDMWS_06550 PF00155 Aminotransferase class I and II TDMWS_06560 PF00342 Phosphoglucose isomerase TDMWS_06570 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_06570 PF00989 PAS fold TDMWS_06570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_06580 PF13538 UvrD-like helicase C-terminal domain TDMWS_06590 PF00580 UvrD/REP helicase N-terminal domain TDMWS_06590 PF12705 PD-(D/E)XK nuclease superfamily TDMWS_06590 PF13361 UvrD-like helicase C-terminal domain TDMWS_06600 PF17946 RecC C-terminal domain TDMWS_06640 PF00669 Bacterial flagellin N-terminal helical region TDMWS_06640 PF00700 Bacterial flagellin C-terminal helical region TDMWS_06650 PF00035 Double-stranded RNA binding motif TDMWS_06650 PF14622 Ribonuclease-III-like TDMWS_06660 PF13607 Succinyl-CoA ligase like flavodoxin domain TDMWS_06660 PF13380 CoA binding domain TDMWS_06660 PF00583 Acetyltransferase (GNAT) family TDMWS_06670 PF07085 DRTGG domain TDMWS_06680 PF00075 RNase H TDMWS_06700 PF12221 Bacterial membrane protein N terminal TDMWS_06700 PF01145 SPFH domain / Band 7 family TDMWS_06710 PF01145 SPFH domain / Band 7 family TDMWS_06740 PF01050 Mannose-6-phosphate isomerase TDMWS_06740 PF00483 Nucleotidyl transferase TDMWS_06760 PF02653 Branched-chain amino acid transport system / permease component TDMWS_06770 PF11862 Domain of unknown function (DUF3382) TDMWS_06770 PF02653 Branched-chain amino acid transport system / permease component TDMWS_06780 PF00005 ABC transporter TDMWS_06780 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDMWS_06790 PF00005 ABC transporter TDMWS_06800 PF05736 OprF membrane domain TDMWS_06800 PF00691 OmpA family TDMWS_06850 PF13291 ACT domain TDMWS_06850 PF04607 Region found in RelA / SpoT proteins TDMWS_06850 PF02824 TGS domain TDMWS_06860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDMWS_06890 PF03144 Elongation factor Tu domain 2 TDMWS_06890 PF16658 Class II release factor RF3, C-terminal domain TDMWS_06890 PF00009 Elongation factor Tu GTP binding domain TDMWS_06910 PF00682 HMGL-like TDMWS_06910 PF08502 LeuA allosteric (dimerisation) domain TDMWS_06920 PF01915 Glycosyl hydrolase family 3 C-terminal domain TDMWS_06920 PF00933 Glycosyl hydrolase family 3 N terminal domain TDMWS_06950 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_06960 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_06970 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_06980 PF03313 Serine dehydratase alpha chain TDMWS_06980 PF03315 Serine dehydratase beta chain TDMWS_07000 PF00535 Glycosyl transferase family 2 TDMWS_07010 PF02223 Thymidylate kinase TDMWS_07020 PF01966 HD domain TDMWS_07040 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDMWS_07040 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDMWS_07040 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDMWS_07050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDMWS_07070 PF01975 Survival protein SurE TDMWS_07080 PF01116 Fructose-bisphosphate aldolase class-II TDMWS_07090 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TDMWS_07090 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TDMWS_07100 PF01336 OB-fold nucleic acid binding domain TDMWS_07100 PF02811 PHP domain TDMWS_07100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TDMWS_07100 PF07733 Bacterial DNA polymerase III alpha NTPase domain TDMWS_07100 PF14579 Helix-hairpin-helix motif TDMWS_07110 PF01242 6-pyruvoyl tetrahydropterin synthase TDMWS_07130 PF01740 STAS domain TDMWS_07150 PF01618 MotA/TolQ/ExbB proton channel family TDMWS_07160 PF13677 Membrane MotB of proton-channel complex MotA/MotB TDMWS_07160 PF00691 OmpA family TDMWS_07200 PF13860 FlgD Ig-like domain TDMWS_07200 PF03963 Flagellar hook capping protein - N-terminal region TDMWS_07200 PF13861 FlgD Tudor-like domain TDMWS_07210 PF07559 Flagellar basal body protein FlaE TDMWS_07210 PF07196 Flagellin hook IN motif TDMWS_07210 PF00460 Flagella basal body rod protein TDMWS_07210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_07230 PF01259 SAICAR synthetase TDMWS_07240 PF00815 Histidinol dehydrogenase TDMWS_07280 PF02954 Bacterial regulatory protein, Fis family TDMWS_07280 PF00158 Sigma-54 interaction domain TDMWS_07280 PF00072 Response regulator receiver domain TDMWS_07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_07310 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_07320 PF02954 Bacterial regulatory protein, Fis family TDMWS_07320 PF00072 Response regulator receiver domain TDMWS_07320 PF00158 Sigma-54 interaction domain TDMWS_07330 PF00072 Response regulator receiver domain TDMWS_07340 PF01048 Phosphorylase superfamily TDMWS_07350 PF01618 MotA/TolQ/ExbB proton channel family TDMWS_07360 PF13677 Membrane MotB of proton-channel complex MotA/MotB TDMWS_07360 PF00691 OmpA family TDMWS_07380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TDMWS_07380 PF00289 Biotin carboxylase, N-terminal domain TDMWS_07380 PF02785 Biotin carboxylase C-terminal domain TDMWS_07390 PF17848 Acetyl-coA carboxylase zinc finger domain TDMWS_07390 PF01039 Carboxyl transferase domain TDMWS_07420 PF00436 Single-strand binding protein family TDMWS_07470 PF00005 ABC transporter TDMWS_07480 PF00005 ABC transporter TDMWS_07480 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDMWS_07500 PF02653 Branched-chain amino acid transport system / permease component TDMWS_07520 PF13580 SIS domain TDMWS_07540 PF03900 Porphobilinogen deaminase, C-terminal domain TDMWS_07540 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TDMWS_07550 PF02321 Outer membrane efflux protein TDMWS_07560 PF00873 AcrB/AcrD/AcrF family TDMWS_07570 PF00529 HlyD membrane-fusion protein of T1SS TDMWS_07570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TDMWS_07580 PF00440 Bacterial regulatory proteins, tetR family TDMWS_07590 PF00753 Metallo-beta-lactamase superfamily TDMWS_07600 PF02277 Phosphoribosyltransferase TDMWS_07620 PF00365 Phosphofructokinase TDMWS_07630 PF08338 Domain of unknown function (DUF1731) TDMWS_07630 PF01370 NAD dependent epimerase/dehydratase family TDMWS_07640 PF01106 NifU-like domain TDMWS_07640 PF04324 BFD-like [2Fe-2S] binding domain TDMWS_07640 PF01592 NifU-like N terminal domain TDMWS_07650 PF00266 Aminotransferase class-V TDMWS_07660 PF04377 Arginine-tRNA-protein transferase, C terminus TDMWS_07660 PF04376 Arginine-tRNA-protein transferase, N terminus TDMWS_07670 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain TDMWS_07670 PF00749 tRNA synthetases class I (E and Q), catalytic domain TDMWS_07680 PF13344 Haloacid dehalogenase-like hydrolase TDMWS_07680 PF00293 NUDIX domain TDMWS_07690 PF00881 Nitroreductase family TDMWS_07690 PF01996 F420-0:Gamma-glutamyl ligase TDMWS_07750 PF01435 Peptidase family M48 TDMWS_07760 PF00158 Sigma-54 interaction domain TDMWS_07760 PF00072 Response regulator receiver domain TDMWS_07760 PF02954 Bacterial regulatory protein, Fis family TDMWS_07770 PF07690 Major Facilitator Superfamily TDMWS_07790 PF02659 Putative manganese efflux pump TDMWS_07800 PF17944 Arginine decarboxylase C-terminal helical extension TDMWS_07800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TDMWS_07800 PF17810 Arginine decarboxylase helical bundle domain TDMWS_07810 PF03435 Saccharopine dehydrogenase NADP binding domain TDMWS_07810 PF16653 Saccharopine dehydrogenase C-terminal domain TDMWS_07820 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TDMWS_07830 PF01965 DJ-1/PfpI family TDMWS_07840 PF00155 Aminotransferase class I and II TDMWS_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_07870 PF00672 HAMP domain TDMWS_07870 PF02743 Cache domain TDMWS_07890 PF00211 Adenylate and Guanylate cyclase catalytic domain TDMWS_07900 PF11146 Protein of unknown function (DUF2905) TDMWS_07910 PF00672 HAMP domain TDMWS_07910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_07920 PF00682 HMGL-like TDMWS_07940 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TDMWS_07960 PF00543 Nitrogen regulatory protein P-II TDMWS_07970 PF00148 Nitrogenase component 1 type Oxidoreductase TDMWS_07980 PF00148 Nitrogenase component 1 type Oxidoreductase TDMWS_08000 PF00583 Acetyltransferase (GNAT) family TDMWS_08010 PF00148 Nitrogenase component 1 type Oxidoreductase TDMWS_08020 PF00148 Nitrogenase component 1 type Oxidoreductase TDMWS_08030 PF02579 Dinitrogenase iron-molybdenum cofactor TDMWS_08030 PF04055 Radical SAM superfamily TDMWS_08050 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_08060 PF00005 ABC transporter TDMWS_08060 PF08402 TOBE domain TDMWS_08070 PF01590 GAF domain TDMWS_08070 PF02954 Bacterial regulatory protein, Fis family TDMWS_08070 PF00158 Sigma-54 interaction domain TDMWS_08080 PF07690 Major Facilitator Superfamily TDMWS_08090 PF03741 Integral membrane protein TerC family TDMWS_08110 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_08110 PF00072 Response regulator receiver domain TDMWS_08150 PF13380 CoA binding domain TDMWS_08160 PF01025 GrpE TDMWS_08170 PF04321 RmlD substrate binding domain TDMWS_08180 PF16363 GDP-mannose 4,6 dehydratase TDMWS_08190 PF00588 SpoU rRNA Methylase family TDMWS_08210 PF03186 CobD/Cbib protein TDMWS_08220 PF02926 THUMP domain TDMWS_08220 PF01170 Putative RNA methylase family UPF0020 TDMWS_08220 PF10672 S-adenosylmethionine-dependent methyltransferase TDMWS_08240 PF00380 Ribosomal protein S9/S16 TDMWS_08250 PF00572 Ribosomal protein L13 TDMWS_08280 PF00158 Sigma-54 interaction domain TDMWS_08280 PF00072 Response regulator receiver domain TDMWS_08290 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_08290 PF02743 Cache domain TDMWS_08300 PF03601 Conserved hypothetical protein 698 TDMWS_08320 PF05362 Lon protease (S16) C-terminal proteolytic domain TDMWS_08320 PF02190 ATP-dependent protease La (LON) substrate-binding domain TDMWS_08320 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_08330 PF04002 RadC-like JAB domain TDMWS_08360 PF08264 Anticodon-binding domain of tRNA TDMWS_08360 PF00133 tRNA synthetases class I (I, L, M and V) TDMWS_08360 PF13603 Leucyl-tRNA synthetase, Domain 2 TDMWS_08360 PF09334 tRNA synthetases class I (M) TDMWS_08370 PF01029 NusB family TDMWS_08380 PF00885 6,7-dimethyl-8-ribityllumazine synthase TDMWS_08390 PF00925 GTP cyclohydrolase II TDMWS_08390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TDMWS_08400 PF00677 Lumazine binding domain TDMWS_08410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TDMWS_08410 PF01872 RibD C-terminal domain TDMWS_08420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TDMWS_08430 PF00464 Serine hydroxymethyltransferase TDMWS_08440 PF00109 Beta-ketoacyl synthase, N-terminal domain TDMWS_08440 PF02801 Beta-ketoacyl synthase, C-terminal domain TDMWS_08450 PF00550 Phosphopantetheine attachment site TDMWS_08470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TDMWS_08470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TDMWS_08480 PF02504 Fatty acid synthesis protein TDMWS_08490 PF01783 Ribosomal L32p protein family TDMWS_08510 PF00830 Ribosomal L28 family TDMWS_08520 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TDMWS_08530 PF00873 AcrB/AcrD/AcrF family TDMWS_08540 PF13533 Biotin-lipoyl like TDMWS_08550 PF02321 Outer membrane efflux protein TDMWS_08560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_08560 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_08560 PF18415 Histidine kinase receptor ArcB trans-membrane domain TDMWS_08560 PF01627 Hpt domain TDMWS_08560 PF00989 PAS fold TDMWS_08560 PF00072 Response regulator receiver domain TDMWS_08570 PF01814 Hemerythrin HHE cation binding domain TDMWS_08580 PF00871 Acetokinase family TDMWS_08590 PF01515 Phosphate acetyl/butaryl transferase TDMWS_08600 PF01810 LysE type translocator TDMWS_08610 PF00270 DEAD/DEAH box helicase TDMWS_08610 PF00271 Helicase conserved C-terminal domain TDMWS_08620 PF01220 Dehydroquinase class II TDMWS_08630 PF08207 Elongation factor P (EF-P) KOW-like domain TDMWS_08630 PF01132 Elongation factor P (EF-P) OB domain TDMWS_08630 PF09285 Elongation factor P, C-terminal TDMWS_08640 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TDMWS_08640 PF17854 FtsK alpha domain TDMWS_08640 PF09397 Ftsk gamma domain TDMWS_08640 PF01580 FtsK/SpoIIIE family TDMWS_08650 PF13247 4Fe-4S dicluster domain TDMWS_08660 PF01568 Molydopterin dinucleotide binding domain TDMWS_08660 PF00384 Molybdopterin oxidoreductase TDMWS_08660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TDMWS_08670 PF13247 4Fe-4S dicluster domain TDMWS_08710 PF00072 Response regulator receiver domain TDMWS_08710 PF13188 PAS domain TDMWS_08710 PF08448 PAS fold TDMWS_08710 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_08710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_08720 PF00072 Response regulator receiver domain TDMWS_08720 PF00158 Sigma-54 interaction domain TDMWS_08740 PF16450 Proteasomal ATPase OB C-terminal domain TDMWS_08740 PF17758 Proteasomal ATPase OB N-terminal domain TDMWS_08740 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_08750 PF07291 Methylamine utilisation protein MauE TDMWS_08770 PF03807 NADP oxidoreductase coenzyme F420-dependent TDMWS_08770 PF14748 Pyrroline-5-carboxylate reductase dimerisation TDMWS_08780 PF00334 Nucleoside diphosphate kinase TDMWS_08800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TDMWS_08800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TDMWS_08810 PF04748 Divergent polysaccharide deacetylase TDMWS_08820 PF13180 PDZ domain TDMWS_08820 PF03572 Peptidase family S41 TDMWS_08860 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_08870 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_08880 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_08890 PF00005 ABC transporter TDMWS_08900 PF00202 Aminotransferase class-III TDMWS_08910 PF00692 dUTPase TDMWS_08920 PF11897 Protein of unknown function (DUF3417) TDMWS_08920 PF00343 Carbohydrate phosphorylase TDMWS_08930 PF01728 FtsJ-like methyltransferase TDMWS_08930 PF01479 S4 domain TDMWS_08940 PF12105 SpoU, rRNA methylase, C-terminal TDMWS_08940 PF00588 SpoU rRNA Methylase family TDMWS_08950 PF01264 Chorismate synthase TDMWS_08960 PF02698 DUF218 domain TDMWS_09020 PF01625 Peptide methionine sulfoxide reductase TDMWS_09040 PF00176 SNF2 family N-terminal domain TDMWS_09040 PF12419 SNF2 Helicase protein TDMWS_09040 PF00271 Helicase conserved C-terminal domain TDMWS_09050 PF00270 DEAD/DEAH box helicase TDMWS_09050 PF04408 Helicase associated domain (HA2) TDMWS_09050 PF00271 Helicase conserved C-terminal domain TDMWS_09050 PF08482 ATP-dependent helicase C-terminal TDMWS_09060 PF04608 Phosphatidylglycerophosphatase A TDMWS_09070 PF02545 Maf-like protein TDMWS_09080 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_09080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDMWS_09100 PF00731 AIR carboxylase TDMWS_09110 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TDMWS_09110 PF02843 Phosphoribosylglycinamide synthetase, C domain TDMWS_09110 PF02844 Phosphoribosylglycinamide synthetase, N domain TDMWS_09120 PF01119 DNA mismatch repair protein, C-terminal domain TDMWS_09120 PF08676 MutL C terminal dimerisation domain TDMWS_09130 PF04453 LPS transport system D TDMWS_09130 PF03968 OstA-like protein TDMWS_09180 PF00037 4Fe-4S binding domain TDMWS_09180 PF13247 4Fe-4S dicluster domain TDMWS_09200 PF13237 4Fe-4S dicluster domain TDMWS_09240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TDMWS_09240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TDMWS_09250 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TDMWS_09250 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TDMWS_09260 PF08679 Dissimilatory sulfite reductase D (DsrD) TDMWS_09270 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDMWS_09270 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDMWS_09300 PF01556 DnaJ C terminal domain TDMWS_09300 PF00226 DnaJ domain TDMWS_09320 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_09320 PF10431 C-terminal, D2-small domain, of ClpB protein TDMWS_09320 PF02861 Clp amino terminal domain, pathogenicity island component TDMWS_09320 PF07724 AAA domain (Cdc48 subfamily) TDMWS_09320 PF17871 AAA lid domain TDMWS_09330 PF00849 RNA pseudouridylate synthase TDMWS_09340 PF09820 Predicted AAA-ATPase TDMWS_09340 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_09350 PF07733 Bacterial DNA polymerase III alpha NTPase domain TDMWS_09350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TDMWS_09350 PF14579 Helix-hairpin-helix motif TDMWS_09350 PF02811 PHP domain TDMWS_09350 PF00929 Exonuclease TDMWS_09360 PF13439 Glycosyltransferase Family 4 TDMWS_09360 PF00534 Glycosyl transferases group 1 TDMWS_09370 PF09820 Predicted AAA-ATPase TDMWS_09370 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_09380 PF04551 GcpE protein TDMWS_09390 PF03129 Anticodon binding domain TDMWS_09390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDMWS_09390 PF04073 Aminoacyl-tRNA editing domain TDMWS_09400 PF02601 Exonuclease VII, large subunit TDMWS_09400 PF13742 OB-fold nucleic acid binding domain TDMWS_09410 PF02609 Exonuclease VII small subunit TDMWS_09420 PF00348 Polyprenyl synthetase TDMWS_09430 PF02780 Transketolase, C-terminal domain TDMWS_09430 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TDMWS_09430 PF02779 Transketolase, pyrimidine binding domain TDMWS_09440 PF01964 Radical SAM ThiC family TDMWS_09450 PF08543 Phosphomethylpyrimidine kinase TDMWS_09450 PF02581 Thiamine monophosphate synthase TDMWS_09470 PF05690 Thiazole biosynthesis protein ThiG TDMWS_09490 PF00899 ThiF family TDMWS_09500 PF02581 Thiamine monophosphate synthase TDMWS_09530 PF01933 Uncharacterised protein family UPF0052 TDMWS_09600 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TDMWS_09600 PF00953 Glycosyl transferase family 4 TDMWS_09640 PF00535 Glycosyl transferase family 2 TDMWS_09700 PF01609 Transposase DDE domain TDMWS_09700 PF05598 Transposase domain (DUF772) TDMWS_09720 PF01370 NAD dependent epimerase/dehydratase family TDMWS_09730 PF16363 GDP-mannose 4,6 dehydratase TDMWS_09740 PF00483 Nucleotidyl transferase TDMWS_09740 PF01050 Mannose-6-phosphate isomerase TDMWS_09750 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_09750 PF09820 Predicted AAA-ATPase TDMWS_09760 PF02381 MraZ protein, putative antitoxin-like TDMWS_09770 PF01795 MraW methylase family TDMWS_09790 PF00905 Penicillin binding protein transpeptidase domain TDMWS_09790 PF03717 Penicillin-binding Protein dimerisation domain TDMWS_09800 PF02875 Mur ligase family, glutamate ligase domain TDMWS_09800 PF01225 Mur ligase family, catalytic domain TDMWS_09800 PF08245 Mur ligase middle domain TDMWS_09810 PF08245 Mur ligase middle domain TDMWS_09810 PF01225 Mur ligase family, catalytic domain TDMWS_09810 PF02875 Mur ligase family, glutamate ligase domain TDMWS_09820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TDMWS_09820 PF00953 Glycosyl transferase family 4 TDMWS_09830 PF08245 Mur ligase middle domain TDMWS_09840 PF01098 Cell cycle protein TDMWS_09850 PF04101 Glycosyltransferase family 28 C-terminal domain TDMWS_09850 PF03033 Glycosyltransferase family 28 N-terminal domain TDMWS_09860 PF01225 Mur ligase family, catalytic domain TDMWS_09860 PF02875 Mur ligase family, glutamate ligase domain TDMWS_09860 PF08245 Mur ligase middle domain TDMWS_09870 PF03799 Cell division protein FtsQ TDMWS_09870 PF08478 POTRA domain, FtsQ-type TDMWS_09880 PF02491 SHS2 domain inserted in FTSA TDMWS_09890 PF12327 FtsZ family, C-terminal domain TDMWS_09890 PF00091 Tubulin/FtsZ family, GTPase domain TDMWS_09900 PF00919 Uncharacterized protein family UPF0004 TDMWS_09900 PF04055 Radical SAM superfamily TDMWS_09900 PF18693 TRAM domain TDMWS_09910 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TDMWS_09910 PF06165 Glycosyltransferase family 36 TDMWS_09910 PF10091 Putative glucoamylase TDMWS_09960 PF00535 Glycosyl transferase family 2 TDMWS_09990 PF00535 Glycosyl transferase family 2 TDMWS_10000 PF00535 Glycosyl transferase family 2 TDMWS_10010 PF01209 ubiE/COQ5 methyltransferase family TDMWS_10030 PF16363 GDP-mannose 4,6 dehydratase TDMWS_10080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TDMWS_10080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TDMWS_10080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TDMWS_10100 PF01370 NAD dependent epimerase/dehydratase family TDMWS_10110 PF16363 GDP-mannose 4,6 dehydratase TDMWS_10140 PF00245 Alkaline phosphatase TDMWS_10160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TDMWS_10160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TDMWS_10170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_10170 PF00072 Response regulator receiver domain TDMWS_10170 PF13188 PAS domain TDMWS_10170 PF08448 PAS fold TDMWS_10170 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_10180 PF00072 Response regulator receiver domain TDMWS_10180 PF02954 Bacterial regulatory protein, Fis family TDMWS_10180 PF00158 Sigma-54 interaction domain TDMWS_10190 PF00155 Aminotransferase class I and II TDMWS_10200 PF01177 Asp/Glu/Hydantoin racemase TDMWS_10220 PF12627 Probable RNA and SrmB- binding site of polymerase A TDMWS_10220 PF12626 Polymerase A arginine-rich C-terminus TDMWS_10220 PF01743 Poly A polymerase head domain TDMWS_10280 PF00578 AhpC/TSA family TDMWS_10290 PF01479 S4 domain TDMWS_10290 PF00849 RNA pseudouridylate synthase TDMWS_10300 PF10458 Valyl tRNA synthetase tRNA binding arm TDMWS_10300 PF00133 tRNA synthetases class I (I, L, M and V) TDMWS_10300 PF08264 Anticodon-binding domain of tRNA TDMWS_10310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_10320 PF00551 Formyl transferase TDMWS_10330 PF01871 AMMECR1 TDMWS_10350 PF01812 5-formyltetrahydrofolate cyclo-ligase family TDMWS_10370 PF03372 Endonuclease/Exonuclease/phosphatase family TDMWS_10380 PF00440 Bacterial regulatory proteins, tetR family TDMWS_10390 PF01139 tRNA-splicing ligase RtcB TDMWS_10400 PF00072 Response regulator receiver domain TDMWS_10400 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_10420 PF02954 Bacterial regulatory protein, Fis family TDMWS_10420 PF00072 Response regulator receiver domain TDMWS_10420 PF00158 Sigma-54 interaction domain TDMWS_10430 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_10430 PF00989 PAS fold TDMWS_10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_10440 PF02424 ApbE family TDMWS_10450 PF04060 Putative Fe-S cluster TDMWS_10450 PF13187 4Fe-4S dicluster domain TDMWS_10460 PF02508 Rnf-Nqr subunit, membrane protein TDMWS_10470 PF02508 Rnf-Nqr subunit, membrane protein TDMWS_10480 PF04205 FMN-binding domain TDMWS_10490 PF03116 NQR2, RnfD, RnfE family TDMWS_10500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TDMWS_10500 PF12838 4Fe-4S dicluster domain TDMWS_10500 PF13375 RnfC Barrel sandwich hybrid domain TDMWS_10500 PF10531 SLBB domain TDMWS_10530 PF09308 LuxQ, periplasmic TDMWS_10530 PF00072 Response regulator receiver domain TDMWS_10530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_10530 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_10550 PF01042 Endoribonuclease L-PSP TDMWS_10590 PF00005 ABC transporter TDMWS_10600 PF02405 Permease MlaE TDMWS_10630 PF01595 Cyclin M transmembrane N-terminal domain TDMWS_10630 PF00571 CBS domain TDMWS_10640 PF03100 CcmE TDMWS_10650 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TDMWS_10650 PF01578 Cytochrome C assembly protein TDMWS_10660 PF00005 ABC transporter TDMWS_10680 PF01578 Cytochrome C assembly protein TDMWS_10710 PF13458 Periplasmic binding protein TDMWS_10720 PF02653 Branched-chain amino acid transport system / permease component TDMWS_10730 PF02653 Branched-chain amino acid transport system / permease component TDMWS_10730 PF11862 Domain of unknown function (DUF3382) TDMWS_10740 PF00005 ABC transporter TDMWS_10740 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDMWS_10750 PF00005 ABC transporter TDMWS_10760 PF00478 IMP dehydrogenase / GMP reductase domain TDMWS_10760 PF00571 CBS domain TDMWS_10770 PF02540 NAD synthase TDMWS_10770 PF00958 GMP synthase C terminal domain TDMWS_10770 PF00117 Glutamine amidotransferase class-I TDMWS_10780 PF02416 mttA/Hcf106 family TDMWS_10790 PF00902 Sec-independent protein translocase protein (TatC) TDMWS_10800 PF00475 Imidazoleglycerol-phosphate dehydratase TDMWS_10820 PF00977 Histidine biosynthesis protein TDMWS_10850 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_10850 PF08448 PAS fold TDMWS_10860 PF00999 Sodium/hydrogen exchanger family TDMWS_10860 PF02080 TrkA-C domain TDMWS_10860 PF02254 TrkA-N domain TDMWS_10900 PF00156 Phosphoribosyl transferase domain TDMWS_10910 PF00701 Dihydrodipicolinate synthetase family TDMWS_10920 PF01678 Diaminopimelate epimerase TDMWS_10950 PF10609 NUBPL iron-transfer P-loop NTPase TDMWS_10960 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_10970 PF00472 RF-1 domain TDMWS_10970 PF03462 PCRF domain TDMWS_10980 PF00795 Carbon-nitrogen hydrolase TDMWS_10990 PF00571 CBS domain TDMWS_10990 PF03471 Transporter associated domain TDMWS_11010 PF01134 Glucose inhibited division protein A TDMWS_11010 PF13932 GidA associated domain TDMWS_11020 PF07687 Peptidase dimerisation domain TDMWS_11020 PF01546 Peptidase family M20/M25/M40 TDMWS_11060 PF09335 SNARE associated Golgi protein TDMWS_11070 PF10609 NUBPL iron-transfer P-loop NTPase TDMWS_11080 PF01464 Transglycosylase SLT domain TDMWS_11090 PF01066 CDP-alcohol phosphatidyltransferase TDMWS_11100 PF00437 Type II/IV secretion system protein TDMWS_11110 PF00437 Type II/IV secretion system protein TDMWS_11160 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TDMWS_11170 PF00814 Glycoprotease family TDMWS_11180 PF00085 Thioredoxin TDMWS_11190 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_11200 PF13525 Outer membrane lipoprotein TDMWS_11210 PF03060 Nitronate monooxygenase TDMWS_11220 PF02654 Cobalamin-5-phosphate synthase TDMWS_11270 PF02322 Cytochrome bd terminal oxidase subunit II TDMWS_11280 PF01654 Cytochrome bd terminal oxidase subunit I TDMWS_11300 PF00258 Flavodoxin TDMWS_11300 PF00753 Metallo-beta-lactamase superfamily TDMWS_11310 PF00301 Rubredoxin TDMWS_11320 PF01475 Ferric uptake regulator family TDMWS_11370 PF11870 Domain of unknown function (DUF3390) TDMWS_11370 PF13183 4Fe-4S dicluster domain TDMWS_11370 PF02589 LUD domain TDMWS_11380 PF02589 LUD domain TDMWS_11390 PF00664 ABC transporter transmembrane region TDMWS_11390 PF00005 ABC transporter TDMWS_11400 PF14883 Hypothetical glycosyl hydrolase family 13 TDMWS_11400 PF01522 Polysaccharide deacetylase TDMWS_11430 PF00923 Transaldolase/Fructose-6-phosphate aldolase TDMWS_11440 PF00672 HAMP domain TDMWS_11440 PF16591 Helical bimodular sensor domain TDMWS_11440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_11450 PF01584 CheW-like domain TDMWS_11460 PF02743 Cache domain TDMWS_11460 PF00672 HAMP domain TDMWS_11460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_11480 PF00072 Response regulator receiver domain TDMWS_11490 PF01584 CheW-like domain TDMWS_11490 PF02895 Signal transducing histidine kinase, homodimeric domain TDMWS_11490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_11490 PF01627 Hpt domain TDMWS_11500 PF01739 CheR methyltransferase, SAM binding domain TDMWS_11500 PF03705 CheR methyltransferase, all-alpha domain TDMWS_11510 PF03975 CheD chemotactic sensory transduction TDMWS_11530 PF01339 CheB methylesterase TDMWS_11530 PF00072 Response regulator receiver domain TDMWS_11540 PF00072 Response regulator receiver domain TDMWS_11540 PF00486 Transcriptional regulatory protein, C terminal TDMWS_11550 PF01627 Hpt domain TDMWS_11550 PF02895 Signal transducing histidine kinase, homodimeric domain TDMWS_11550 PF01584 CheW-like domain TDMWS_11550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_11560 PF08448 PAS fold TDMWS_11560 PF03705 CheR methyltransferase, all-alpha domain TDMWS_11560 PF01339 CheB methylesterase TDMWS_11560 PF01739 CheR methyltransferase, SAM binding domain TDMWS_11570 PF17149 Periplasmic sensor domain found in signal transduction proteins TDMWS_11570 PF00672 HAMP domain TDMWS_11570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_11570 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_11570 PF01627 Hpt domain TDMWS_11570 PF00072 Response regulator receiver domain TDMWS_11580 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_11590 PF00989 PAS fold TDMWS_11590 PF18415 Histidine kinase receptor ArcB trans-membrane domain TDMWS_11590 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_11590 PF00072 Response regulator receiver domain TDMWS_11590 PF01627 Hpt domain TDMWS_11600 PF00563 EAL domain TDMWS_11600 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_11600 PF03707 Bacterial signalling protein N terminal repeat TDMWS_11610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDMWS_11610 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDMWS_11620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_11640 PF00005 ABC transporter TDMWS_11650 PF01032 FecCD transport family TDMWS_11660 PF06180 Cobalt chelatase (CbiK) TDMWS_11700 PF00535 Glycosyl transferase family 2 TDMWS_11720 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding TDMWS_11730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_11740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_11750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_11760 PF01888 CbiD TDMWS_11770 PF00860 Permease family TDMWS_11800 PF01926 50S ribosome-binding GTPase TDMWS_11820 PF11992 Domain of unknown function (DUF3488) TDMWS_11820 PF13559 Domain of unknown function (DUF4129) TDMWS_11820 PF01841 Transglutaminase-like superfamily TDMWS_11850 PF00069 Protein kinase domain TDMWS_11860 PF00535 Glycosyl transferase family 2 TDMWS_11880 PF04349 Periplasmic glucan biosynthesis protein, MdoG TDMWS_11890 PF02085 Class III cytochrome C family TDMWS_11900 PF02634 FdhD/NarQ family TDMWS_11910 PF02834 LigT like Phosphoesterase TDMWS_11920 PF02789 Cytosol aminopeptidase family, N-terminal domain TDMWS_11920 PF00883 Cytosol aminopeptidase family, catalytic domain TDMWS_11930 PF11066 Protein of unknown function (DUF2867) TDMWS_11930 PF13460 NAD(P)H-binding TDMWS_11970 PF04286 Protein of unknown function (DUF445) TDMWS_11980 PF02592 Putative vitamin uptake transporter TDMWS_12000 PF01676 Metalloenzyme superfamily TDMWS_12000 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TDMWS_12010 PF01842 ACT domain TDMWS_12010 PF00742 Homoserine dehydrogenase TDMWS_12010 PF03447 Homoserine dehydrogenase, NAD binding domain TDMWS_12020 PF07690 Major Facilitator Superfamily TDMWS_12030 PF07664 Ferrous iron transport protein B C terminus TDMWS_12030 PF17910 FeoB cytosolic helical domain TDMWS_12030 PF07670 Nucleoside recognition TDMWS_12030 PF04023 FeoA domain TDMWS_12030 PF02421 Ferrous iron transport protein B TDMWS_12070 PF00448 SRP54-type protein, GTPase domain TDMWS_12070 PF02881 SRP54-type protein, helical bundle domain TDMWS_12090 PF00672 HAMP domain TDMWS_12090 PF01966 HD domain TDMWS_12100 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_12100 PF17862 AAA+ lid domain TDMWS_12100 PF06480 FtsH Extracellular TDMWS_12100 PF01434 Peptidase family M41 TDMWS_12110 PF00809 Pterin binding enzyme TDMWS_12120 PF02457 DisA bacterial checkpoint controller nucleotide-binding TDMWS_12140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDMWS_12140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDMWS_12140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDMWS_12140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDMWS_12150 PF00483 Nucleotidyl transferase TDMWS_12160 PF00271 Helicase conserved C-terminal domain TDMWS_12160 PF17764 3′ DNA-binding domain (3′BD) TDMWS_12160 PF18074 Primosomal protein N C-terminal domain TDMWS_12160 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TDMWS_12160 PF04851 Type III restriction enzyme, res subunit TDMWS_12170 PF00152 tRNA synthetases class II (D, K and N) TDMWS_12170 PF01336 OB-fold nucleic acid binding domain TDMWS_12180 PF13520 Amino acid permease TDMWS_12210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_12210 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_12220 PF02347 Glycine cleavage system P-protein TDMWS_12230 PF02347 Glycine cleavage system P-protein TDMWS_12240 PF01597 Glycine cleavage H-protein TDMWS_12260 PF02590 Predicted SPOUT methyltransferase TDMWS_12290 PF13614 AAA domain TDMWS_12300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TDMWS_12320 PF02666 Phosphatidylserine decarboxylase TDMWS_12330 PF01066 CDP-alcohol phosphatidyltransferase TDMWS_12340 PF00682 HMGL-like TDMWS_12340 PF08502 LeuA allosteric (dimerisation) domain TDMWS_12350 PF00330 Aconitase family (aconitate hydratase) TDMWS_12360 PF00694 Aconitase C-terminal domain TDMWS_12370 PF00180 Isocitrate/isopropylmalate dehydrogenase TDMWS_12390 PF03144 Elongation factor Tu domain 2 TDMWS_12390 PF00009 Elongation factor Tu GTP binding domain TDMWS_12390 PF14492 Elongation Factor G, domain II TDMWS_12390 PF00679 Elongation factor G C-terminus TDMWS_12390 PF03764 Elongation factor G, domain IV TDMWS_12400 PF01050 Mannose-6-phosphate isomerase TDMWS_12400 PF00483 Nucleotidyl transferase TDMWS_12410 PF00501 AMP-binding enzyme TDMWS_12410 PF13193 AMP-binding enzyme C-terminal domain TDMWS_12420 PF00149 Calcineurin-like phosphoesterase TDMWS_12420 PF12320 Type 5 capsule protein repressor C-terminal domain TDMWS_12430 PF13476 AAA domain TDMWS_12460 PF00501 AMP-binding enzyme TDMWS_12470 PF05698 Bacterial trigger factor protein (TF) C-terminus TDMWS_12470 PF05697 Bacterial trigger factor protein (TF) TDMWS_12480 PF00574 Clp protease TDMWS_12490 PF06689 ClpX C4-type zinc finger TDMWS_12490 PF10431 C-terminal, D2-small domain, of ClpB protein TDMWS_12490 PF07724 AAA domain (Cdc48 subfamily) TDMWS_12500 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_12500 PF05362 Lon protease (S16) C-terminal proteolytic domain TDMWS_12500 PF02190 ATP-dependent protease La (LON) substrate-binding domain TDMWS_12510 PF08534 Redoxin TDMWS_12520 PF00210 Ferritin-like domain TDMWS_12540 PF00398 Ribosomal RNA adenine dimethylase TDMWS_12550 PF00216 Bacterial DNA-binding protein TDMWS_12570 PF01165 Ribosomal protein S21 TDMWS_12580 PF09424 Yqey-like protein TDMWS_12590 PF00488 MutS domain V TDMWS_12590 PF01713 Smr domain TDMWS_12600 PF10410 DnaB-helicase binding domain of primase TDMWS_12600 PF08275 DNA primase catalytic core, N-terminal domain TDMWS_12600 PF01807 CHC2 zinc finger TDMWS_12610 PF04539 Sigma-70 region 3 TDMWS_12610 PF04542 Sigma-70 region 2 TDMWS_12610 PF04545 Sigma-70, region 4 TDMWS_12610 PF03979 Sigma-70 factor, region 1.1 TDMWS_12610 PF00140 Sigma-70 factor, region 1.2 TDMWS_12610 PF04546 Sigma-70, non-essential region TDMWS_12650 PF02085 Class III cytochrome C family TDMWS_12690 PF02085 Class III cytochrome C family TDMWS_12700 PF13247 4Fe-4S dicluster domain TDMWS_12710 PF03916 Polysulphide reductase, NrfD TDMWS_12740 PF02754 Cysteine-rich domain TDMWS_12760 PF00072 Response regulator receiver domain TDMWS_12760 PF00486 Transcriptional regulatory protein, C terminal TDMWS_12770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_12770 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_12770 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_12780 PF02082 Transcriptional regulator TDMWS_12790 PF01926 50S ribosome-binding GTPase TDMWS_12810 PF00579 tRNA synthetases class I (W and Y) TDMWS_12820 PF02163 Peptidase family M50 TDMWS_12830 PF02441 Flavoprotein TDMWS_12840 PF00211 Adenylate and Guanylate cyclase catalytic domain TDMWS_12860 PF01103 Surface antigen TDMWS_12860 PF07244 Surface antigen variable number repeat TDMWS_12860 PF17243 POTRA domain TamA domain 1 TDMWS_12880 PF00501 AMP-binding enzyme TDMWS_12880 PF14535 AMP-binding enzyme C-terminal domain TDMWS_12890 PF00772 DnaB-like helicase N terminal domain TDMWS_12890 PF03796 DnaB-like helicase C terminal domain TDMWS_12900 PF03948 Ribosomal protein L9, C-terminal domain TDMWS_12900 PF01281 Ribosomal protein L9, N-terminal domain TDMWS_12910 PF01084 Ribosomal protein S18 TDMWS_12920 PF01250 Ribosomal protein S6 TDMWS_12930 PF01171 PP-loop family TDMWS_12950 PF00072 Response regulator receiver domain TDMWS_12950 PF00486 Transcriptional regulatory protein, C terminal TDMWS_12970 PF00950 ABC 3 transport family TDMWS_12980 PF00005 ABC transporter TDMWS_12990 PF01297 Zinc-uptake complex component A periplasmic TDMWS_13010 PF04333 MlaA lipoprotein TDMWS_13040 PF00005 ABC transporter TDMWS_13050 PF02405 Permease MlaE TDMWS_13080 PF00216 Bacterial DNA-binding protein TDMWS_13090 PF00672 HAMP domain TDMWS_13090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_13090 PF13426 PAS domain TDMWS_13130 PF02954 Bacterial regulatory protein, Fis family TDMWS_13130 PF00072 Response regulator receiver domain TDMWS_13130 PF00158 Sigma-54 interaction domain TDMWS_13140 PF03772 Competence protein TDMWS_13140 PF13567 Domain of unknown function (DUF4131) TDMWS_13140 PF00753 Metallo-beta-lactamase superfamily TDMWS_13170 PF00440 Bacterial regulatory proteins, tetR family TDMWS_13210 PF00679 Elongation factor G C-terminus TDMWS_13210 PF00009 Elongation factor Tu GTP binding domain TDMWS_13210 PF03144 Elongation factor Tu domain 2 TDMWS_13220 PF01494 FAD binding domain TDMWS_13230 PF03449 Transcription elongation factor, N-terminal TDMWS_13230 PF01272 Transcription elongation factor, GreA/GreB, C-term TDMWS_13340 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system TDMWS_13390 PF00689 Cation transporting ATPase, C-terminus TDMWS_13390 PF00690 Cation transporter/ATPase, N-terminus TDMWS_13400 PF02743 Cache domain TDMWS_13400 PF00672 HAMP domain TDMWS_13400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_13410 PF12627 Probable RNA and SrmB- binding site of polymerase A TDMWS_13410 PF01743 Poly A polymerase head domain TDMWS_13410 PF01966 HD domain TDMWS_13430 PF00285 Citrate synthase, C-terminal domain TDMWS_13440 PF00583 Acetyltransferase (GNAT) family TDMWS_13440 PF13380 CoA binding domain TDMWS_13440 PF13607 Succinyl-CoA ligase like flavodoxin domain TDMWS_13450 PF00501 AMP-binding enzyme TDMWS_13450 PF13193 AMP-binding enzyme C-terminal domain TDMWS_13450 PF16177 Acetyl-coenzyme A synthetase N-terminus TDMWS_13460 PF00403 Heavy-metal-associated domain TDMWS_13470 PF00310 Glutamine amidotransferases class-II TDMWS_13470 PF04898 Glutamate synthase central domain TDMWS_13470 PF01645 Conserved region in glutamate synthase TDMWS_13470 PF01493 GXGXG motif TDMWS_13480 PF00291 Pyridoxal-phosphate dependent enzyme TDMWS_13490 PF00132 Bacterial transferase hexapeptide (six repeats) TDMWS_13510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TDMWS_13510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TDMWS_13530 PF01624 MutS domain I TDMWS_13530 PF05188 MutS domain II TDMWS_13530 PF05192 MutS domain III TDMWS_13530 PF05190 MutS family domain IV TDMWS_13530 PF00488 MutS domain V TDMWS_13560 PF00005 ABC transporter TDMWS_13570 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_13590 PF12627 Probable RNA and SrmB- binding site of polymerase A TDMWS_13590 PF00571 CBS domain TDMWS_13590 PF02272 DHHA1 domain TDMWS_13590 PF01368 DHH family TDMWS_13590 PF01743 Poly A polymerase head domain TDMWS_13600 PF02899 Phage integrase, N-terminal SAM-like domain TDMWS_13600 PF00589 Phage integrase family TDMWS_13610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TDMWS_13650 PF01551 Peptidase family M23 TDMWS_13650 PF08460 Bacterial SH3 domain TDMWS_13670 PF00005 ABC transporter TDMWS_13680 PF13472 GDSL-like Lipase/Acylhydrolase family TDMWS_13690 PF00849 RNA pseudouridylate synthase TDMWS_13700 PF03548 Outer membrane lipoprotein carrier protein LolA TDMWS_13720 PF02548 Ketopantoate hydroxymethyltransferase TDMWS_13730 PF02261 Aspartate decarboxylase TDMWS_13740 PF02569 Pantoate-beta-alanine ligase TDMWS_13770 PF00183 Hsp90 protein TDMWS_13790 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_13790 PF09820 Predicted AAA-ATPase TDMWS_13820 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TDMWS_13830 PF02492 CobW/HypB/UreG, nucleotide-binding domain TDMWS_13840 PF00571 CBS domain TDMWS_13840 PF00478 IMP dehydrogenase / GMP reductase domain TDMWS_13850 PF06968 Biotin and Thiamin Synthesis associated domain TDMWS_13850 PF04055 Radical SAM superfamily TDMWS_13880 PF00550 Phosphopantetheine attachment site TDMWS_13890 PF02801 Beta-ketoacyl synthase, C-terminal domain TDMWS_13890 PF00109 Beta-ketoacyl synthase, N-terminal domain TDMWS_13910 PF00155 Aminotransferase class I and II TDMWS_13930 PF01207 Dihydrouridine synthase (Dus) TDMWS_13950 PF02254 TrkA-N domain TDMWS_13950 PF02080 TrkA-C domain TDMWS_13960 PF02386 Cation transport protein TDMWS_13970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDMWS_13970 PF00005 ABC transporter TDMWS_13980 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_13980 PF12911 N-terminal TM domain of oligopeptide transport permease C TDMWS_13990 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_14000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDMWS_14010 PF14490 Helix-hairpin-helix containing domain TDMWS_14010 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain TDMWS_14010 PF13538 UvrD-like helicase C-terminal domain TDMWS_14020 PF13662 Toprim domain TDMWS_14020 PF02132 RecR protein TDMWS_14030 PF02575 YbaB/EbfC DNA-binding family TDMWS_14040 PF12170 DNA polymerase III tau subunit V interacting with alpha TDMWS_14040 PF12169 DNA polymerase III subunits gamma and tau domain III TDMWS_14050 PF01063 Amino-transferase class IV TDMWS_14090 PF01926 50S ribosome-binding GTPase TDMWS_14090 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TDMWS_14100 PF01008 Initiation factor 2 subunit family TDMWS_14110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDMWS_14120 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDMWS_14120 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDMWS_14120 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDMWS_14130 PF03840 Preprotein translocase SecG subunit TDMWS_14140 PF00121 Triosephosphate isomerase TDMWS_14150 PF00162 Phosphoglycerate kinase TDMWS_14170 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDMWS_14170 PF00391 PEP-utilising enzyme, mobile domain TDMWS_14170 PF02896 PEP-utilising enzyme, TIM barrel domain TDMWS_14180 PF02785 Biotin carboxylase C-terminal domain TDMWS_14180 PF00364 Biotin-requiring enzyme TDMWS_14180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TDMWS_14180 PF00682 HMGL-like TDMWS_14180 PF02436 Conserved carboxylase domain TDMWS_14180 PF00289 Biotin carboxylase, N-terminal domain TDMWS_14190 PF02237 Biotin protein ligase C terminal domain TDMWS_14190 PF03099 Biotin/lipoate A/B protein ligase family TDMWS_14190 PF08279 HTH domain TDMWS_14200 PF01739 CheR methyltransferase, SAM binding domain TDMWS_14200 PF03705 CheR methyltransferase, all-alpha domain TDMWS_14210 PF00072 Response regulator receiver domain TDMWS_14210 PF01339 CheB methylesterase TDMWS_14220 PF01584 CheW-like domain TDMWS_14230 PF02895 Signal transducing histidine kinase, homodimeric domain TDMWS_14230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_14230 PF01627 Hpt domain TDMWS_14230 PF07194 P2 response regulator binding domain TDMWS_14230 PF01584 CheW-like domain TDMWS_14250 PF00672 HAMP domain TDMWS_14250 PF16591 Helical bimodular sensor domain TDMWS_14250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_14260 PF03279 Bacterial lipid A biosynthesis acyltransferase TDMWS_14320 PF02673 Bacitracin resistance protein BacA TDMWS_14330 PF03063 Prismane/CO dehydrogenase family TDMWS_14340 PF00360 Phytochrome region TDMWS_14340 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_14340 PF01590 GAF domain TDMWS_14340 PF00563 EAL domain TDMWS_14350 PF00501 AMP-binding enzyme TDMWS_14350 PF13193 AMP-binding enzyme C-terminal domain TDMWS_14360 PF01938 TRAM domain TDMWS_14360 PF05958 tRNA (Uracil-5-)-methyltransferase TDMWS_14370 PF00491 Arginase family TDMWS_14390 PF00750 tRNA synthetases class I (R) TDMWS_14390 PF03485 Arginyl tRNA synthetase N terminal domain TDMWS_14390 PF05746 DALR anticodon binding domain TDMWS_14400 PF00698 Acyl transferase domain TDMWS_14410 PF02527 rRNA small subunit methyltransferase G TDMWS_14440 PF18073 Rubredoxin metal binding domain TDMWS_14450 PF02915 Rubrerythrin TDMWS_14470 PF00156 Phosphoribosyl transferase domain TDMWS_14490 PF02965 Vitamin B12 dependent methionine synthase, activation domain TDMWS_14490 PF02310 B12 binding domain TDMWS_14490 PF02574 Homocysteine S-methyltransferase TDMWS_14490 PF02607 B12 binding domain TDMWS_14490 PF00809 Pterin binding enzyme TDMWS_14500 PF00140 Sigma-70 factor, region 1.2 TDMWS_14500 PF04542 Sigma-70 region 2 TDMWS_14500 PF04539 Sigma-70 region 3 TDMWS_14500 PF04545 Sigma-70, region 4 TDMWS_14550 PF02502 Ribose/Galactose Isomerase TDMWS_14560 PF02780 Transketolase, C-terminal domain TDMWS_14560 PF00456 Transketolase, thiamine diphosphate binding domain TDMWS_14560 PF02779 Transketolase, pyrimidine binding domain TDMWS_14570 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TDMWS_14600 PF01649 Ribosomal protein S20 TDMWS_14620 PF11867 Domain of unknown function (DUF3387) TDMWS_14620 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TDMWS_14620 PF18766 SWI2/SNF2 ATPase TDMWS_14660 PF01420 Type I restriction modification DNA specificity domain TDMWS_14670 PF02661 Fic/DOC family TDMWS_14670 PF13784 Fic/DOC family N-terminal TDMWS_14680 PF02384 N-6 DNA Methylase TDMWS_14690 PF00664 ABC transporter transmembrane region TDMWS_14690 PF00005 ABC transporter TDMWS_14700 PF05746 DALR anticodon binding domain TDMWS_14700 PF02092 Glycyl-tRNA synthetase beta subunit TDMWS_14710 PF02091 Glycyl-tRNA synthetase alpha subunit TDMWS_14720 PF11967 Recombination protein O N terminal TDMWS_14720 PF02565 Recombination protein O C terminal TDMWS_14740 PF00639 PPIC-type PPIASE domain TDMWS_14740 PF09312 SurA N-terminal domain TDMWS_14750 PF17757 UvrB interaction domain TDMWS_14750 PF00271 Helicase conserved C-terminal domain TDMWS_14750 PF00270 DEAD/DEAH box helicase TDMWS_14750 PF02559 CarD-like/TRCF domain TDMWS_14750 PF03461 TRCF domain TDMWS_14760 PF01584 CheW-like domain TDMWS_14780 PF00294 pfkB family carbohydrate kinase TDMWS_14790 PF01594 AI-2E family transporter TDMWS_14800 PF00120 Glutamine synthetase, catalytic domain TDMWS_14800 PF18318 Glutamine synthetase C-terminal domain TDMWS_14800 PF12437 Glutamine synthetase type III N terminal TDMWS_14810 PF00563 EAL domain TDMWS_14810 PF08668 HDOD domain TDMWS_14820 PF00343 Carbohydrate phosphorylase TDMWS_14830 PF01641 SelR domain TDMWS_14850 PF01467 Cytidylyltransferase-like TDMWS_14860 PF00171 Aldehyde dehydrogenase family TDMWS_14880 PF00158 Sigma-54 interaction domain TDMWS_14880 PF02954 Bacterial regulatory protein, Fis family TDMWS_14880 PF01590 GAF domain TDMWS_14890 PF00072 Response regulator receiver domain TDMWS_14890 PF00486 Transcriptional regulatory protein, C terminal TDMWS_14910 PF00581 Rhodanese-like domain TDMWS_14930 PF04715 Anthranilate synthase component I, N terminal region TDMWS_14930 PF00425 chorismate binding enzyme TDMWS_14940 PF01541 GIY-YIG catalytic domain TDMWS_14940 PF02151 UvrB/uvrC motif TDMWS_14940 PF08459 UvrC Helix-hairpin-helix N-terminal TDMWS_14970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TDMWS_14990 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TDMWS_14990 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TDMWS_15000 PF02445 Quinolinate synthetase A protein TDMWS_15010 PF00158 Sigma-54 interaction domain TDMWS_15010 PF00072 Response regulator receiver domain TDMWS_15010 PF02954 Bacterial regulatory protein, Fis family TDMWS_15040 PF02954 Bacterial regulatory protein, Fis family TDMWS_15040 PF00072 Response regulator receiver domain TDMWS_15040 PF00158 Sigma-54 interaction domain TDMWS_15060 PF00072 Response regulator receiver domain TDMWS_15060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_15060 PF08448 PAS fold TDMWS_15060 PF13188 PAS domain TDMWS_15060 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_15070 PF00486 Transcriptional regulatory protein, C terminal TDMWS_15070 PF00072 Response regulator receiver domain TDMWS_15090 PF00072 Response regulator receiver domain TDMWS_15090 PF00486 Transcriptional regulatory protein, C terminal TDMWS_15100 PF02954 Bacterial regulatory protein, Fis family TDMWS_15100 PF00072 Response regulator receiver domain TDMWS_15100 PF00158 Sigma-54 interaction domain TDMWS_15110 PF00072 Response regulator receiver domain TDMWS_15120 PF00890 FAD binding domain TDMWS_15120 PF02910 Fumarate reductase flavoprotein C-term TDMWS_15130 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TDMWS_15140 PF00749 tRNA synthetases class I (E and Q), catalytic domain TDMWS_15150 PF10414 Sirohaem synthase dimerisation region TDMWS_15150 PF14824 Sirohaem biosynthesis protein central TDMWS_15150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDMWS_15160 PF01578 Cytochrome C assembly protein TDMWS_15170 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TDMWS_15170 PF01488 Shikimate / quinate 5-dehydrogenase TDMWS_15170 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TDMWS_15190 PF01171 PP-loop family TDMWS_15210 PF01145 SPFH domain / Band 7 family TDMWS_15210 PF16200 C-terminal region of band_7 TDMWS_15220 PF13847 Methyltransferase domain TDMWS_15230 PF13416 Bacterial extracellular solute-binding protein TDMWS_15240 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_15250 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_15260 PF00005 ABC transporter TDMWS_15260 PF08402 TOBE domain TDMWS_15280 PF12848 ABC transporter TDMWS_15280 PF00005 ABC transporter TDMWS_15290 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_15300 PF00005 ABC transporter TDMWS_15310 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_15320 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_15340 PF02535 ZIP Zinc transporter TDMWS_15370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_15370 PF07730 Histidine kinase TDMWS_15380 PF00196 Bacterial regulatory proteins, luxR family TDMWS_15380 PF00072 Response regulator receiver domain TDMWS_15410 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_15410 PF09820 Predicted AAA-ATPase TDMWS_15420 PF06418 CTP synthase N-terminus TDMWS_15420 PF00117 Glutamine amidotransferase class-I TDMWS_15430 PF00793 DAHP synthetase I family TDMWS_15470 PF00005 ABC transporter TDMWS_15480 PF04963 Sigma-54 factor, core binding domain TDMWS_15480 PF04552 Sigma-54, DNA binding domain TDMWS_15480 PF00309 Sigma-54 factor, Activator interacting domain (AID) TDMWS_15490 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TDMWS_15490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TDMWS_15500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TDMWS_15510 PF03668 P-loop ATPase protein family TDMWS_15550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDMWS_15560 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_15570 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_15580 PF00005 ABC transporter TDMWS_15580 PF09383 NIL domain TDMWS_15590 PF00005 ABC transporter TDMWS_15600 PF02833 DHHA2 domain TDMWS_15600 PF01368 DHH family TDMWS_15620 PF00437 Type II/IV secretion system protein TDMWS_15620 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TDMWS_15630 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TDMWS_15630 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TDMWS_15640 PF10369 Small subunit of acetolactate synthase TDMWS_15640 PF01842 ACT domain TDMWS_15650 PF00205 Thiamine pyrophosphate enzyme, central domain TDMWS_15650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TDMWS_15650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDMWS_15670 PF13419 Haloacid dehalogenase-like hydrolase TDMWS_15680 PF13193 AMP-binding enzyme C-terminal domain TDMWS_15680 PF00501 AMP-binding enzyme TDMWS_15720 PF02416 mttA/Hcf106 family TDMWS_15740 PF01467 Cytidylyltransferase-like TDMWS_15760 PF10996 Beta-Casp domain TDMWS_15760 PF00753 Metallo-beta-lactamase superfamily TDMWS_15760 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TDMWS_15780 PF11741 AMIN domain TDMWS_15780 PF00263 Bacterial type II and III secretion system protein TDMWS_15780 PF03958 Bacterial type II/III secretion system short domain TDMWS_15780 PF07660 Secretin and TonB N terminus short domain TDMWS_15820 PF11104 Type IV pilus assembly protein PilM; TDMWS_15830 PF07559 Flagellar basal body protein FlaE TDMWS_15830 PF00460 Flagella basal body rod protein TDMWS_15830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_15850 PF09107 Elongation factor SelB, winged helix TDMWS_15850 PF03144 Elongation factor Tu domain 2 TDMWS_15850 PF09106 Elongation factor SelB, winged helix TDMWS_15850 PF00009 Elongation factor Tu GTP binding domain TDMWS_15860 PF02127 Aminopeptidase I zinc metalloprotease (M18) TDMWS_15870 PF00301 Rubredoxin TDMWS_15880 PF00575 S1 RNA binding domain TDMWS_15890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TDMWS_15910 PF16916 Dimerisation domain of Zinc Transporter TDMWS_15910 PF01545 Cation efflux family TDMWS_15950 PF00005 ABC transporter TDMWS_15970 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_15970 PF08448 PAS fold TDMWS_15970 PF13188 PAS domain TDMWS_15970 PF00072 Response regulator receiver domain TDMWS_15980 PF02954 Bacterial regulatory protein, Fis family TDMWS_15980 PF00072 Response regulator receiver domain TDMWS_15980 PF00158 Sigma-54 interaction domain TDMWS_16000 PF01554 MatE TDMWS_16010 PF00696 Amino acid kinase family TDMWS_16010 PF13840 ACT domain TDMWS_16040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDMWS_16040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDMWS_16040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDMWS_16040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDMWS_16070 PF00072 Response regulator receiver domain TDMWS_16070 PF02954 Bacterial regulatory protein, Fis family TDMWS_16070 PF00158 Sigma-54 interaction domain TDMWS_16080 PF00672 HAMP domain TDMWS_16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_16080 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_16080 PF00989 PAS fold TDMWS_16100 PF02629 CoA binding domain TDMWS_16100 PF00549 CoA-ligase TDMWS_16110 PF02080 TrkA-C domain TDMWS_16110 PF02254 TrkA-N domain TDMWS_16120 PF02386 Cation transport protein TDMWS_16140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TDMWS_16170 PF00440 Bacterial regulatory proteins, tetR family TDMWS_16180 PF01734 Patatin-like phospholipase TDMWS_16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_16190 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_16190 PF00989 PAS fold TDMWS_16200 PF00158 Sigma-54 interaction domain TDMWS_16200 PF00072 Response regulator receiver domain TDMWS_16200 PF02954 Bacterial regulatory protein, Fis family TDMWS_16250 PF14437 MafB19-like deaminase TDMWS_16260 PF14437 MafB19-like deaminase TDMWS_16280 PF00871 Acetokinase family TDMWS_16290 PF07085 DRTGG domain TDMWS_16290 PF01515 Phosphate acetyl/butaryl transferase TDMWS_16300 PF02754 Cysteine-rich domain TDMWS_16310 PF02913 FAD linked oxidases, C-terminal domain TDMWS_16310 PF01565 FAD binding domain TDMWS_16320 PF02652 L-lactate permease TDMWS_16330 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDMWS_16330 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDMWS_16330 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDMWS_16330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDMWS_16330 PF10371 Domain of unknown function TDMWS_16350 PF11412 Disulphide bond corrector protein DsbC TDMWS_16350 PF02683 Cytochrome C biogenesis protein transmembrane region TDMWS_16360 PF03006 Haemolysin-III related TDMWS_16390 PF04055 Radical SAM superfamily TDMWS_16410 PF00226 DnaJ domain TDMWS_16410 PF01556 DnaJ C terminal domain TDMWS_16430 PF01458 Uncharacterized protein family (UPF0051) TDMWS_16440 PF00005 ABC transporter TDMWS_16450 PF00691 OmpA family TDMWS_16460 PF07676 WD40-like Beta Propeller Repeat TDMWS_16480 PF02472 Biopolymer transport protein ExbD/TolR TDMWS_16490 PF01618 MotA/TolQ/ExbB proton channel family TDMWS_16520 PF04055 Radical SAM superfamily TDMWS_16520 PF00919 Uncharacterized protein family UPF0004 TDMWS_16530 PF03091 CutA1 divalent ion tolerance protein TDMWS_16540 PF00633 Helix-hairpin-helix motif TDMWS_16540 PF00730 HhH-GPD superfamily base excision DNA repair protein TDMWS_16550 PF01702 Queuine tRNA-ribosyltransferase TDMWS_16580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TDMWS_16590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TDMWS_16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_16600 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_16600 PF00072 Response regulator receiver domain TDMWS_16600 PF09308 LuxQ, periplasmic TDMWS_16680 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_16730 PF01416 tRNA pseudouridine synthase TDMWS_16750 PF00581 Rhodanese-like domain TDMWS_16750 PF00753 Metallo-beta-lactamase superfamily TDMWS_16760 PF10417 C-terminal domain of 1-Cys peroxiredoxin TDMWS_16760 PF00578 AhpC/TSA family TDMWS_16780 PF00586 AIR synthase related protein, N-terminal domain TDMWS_16780 PF02769 AIR synthase related protein, C-terminal domain TDMWS_16800 PF04055 Radical SAM superfamily TDMWS_16810 PF12557 Cob(I)alamin adenosyltransferase N terminal TDMWS_16810 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TDMWS_16820 PF01979 Amidohydrolase family TDMWS_16830 PF01174 SNO glutamine amidotransferase family TDMWS_16840 PF01680 SOR/SNZ family TDMWS_16880 PF00586 AIR synthase related protein, N-terminal domain TDMWS_16880 PF02769 AIR synthase related protein, C-terminal domain TDMWS_16890 PF01924 Hydrogenase formation hypA family TDMWS_16910 PF07478 D-ala D-ala ligase C-terminus TDMWS_16910 PF01820 D-ala D-ala ligase N-terminus TDMWS_16920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TDMWS_16930 PF02348 Cytidylyltransferase TDMWS_16940 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TDMWS_16940 PF00117 Glutamine amidotransferase class-I TDMWS_16960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDMWS_16960 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_16980 PF02570 Precorrin-8X methylmutase TDMWS_17000 PF02954 Bacterial regulatory protein, Fis family TDMWS_17000 PF00072 Response regulator receiver domain TDMWS_17000 PF00158 Sigma-54 interaction domain TDMWS_17010 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_17010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_17020 PF03819 MazG nucleotide pyrophosphohydrolase domain TDMWS_17040 PF00072 Response regulator receiver domain TDMWS_17040 PF01966 HD domain TDMWS_17050 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_17080 PF01256 Carbohydrate kinase TDMWS_17080 PF03853 YjeF-related protein N-terminus TDMWS_17090 PF00571 CBS domain TDMWS_17090 PF01368 DHH family TDMWS_17090 PF02272 DHHA1 domain TDMWS_17090 PF01743 Poly A polymerase head domain TDMWS_17100 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TDMWS_17110 PF12002 MgsA AAA+ ATPase C terminal TDMWS_17110 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_17110 PF16193 AAA C-terminal domain TDMWS_17130 PF00180 Isocitrate/isopropylmalate dehydrogenase TDMWS_17140 PF01176 Translation initiation factor 1A / IF-1 TDMWS_17150 PF02811 PHP domain TDMWS_17160 PF01136 Peptidase family U32 TDMWS_17160 PF16325 Peptidase family U32 C-terminal domain TDMWS_17170 PF00795 Carbon-nitrogen hydrolase TDMWS_17180 PF00478 IMP dehydrogenase / GMP reductase domain TDMWS_17180 PF00571 CBS domain TDMWS_17210 PF00155 Aminotransferase class I and II TDMWS_17220 PF03023 Lipid II flippase MurJ TDMWS_17240 PF02690 Na+/Pi-cotransporter TDMWS_17270 PF13426 PAS domain TDMWS_17270 PF00672 HAMP domain TDMWS_17270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_17270 PF13426 PAS domain TDMWS_17270 PF00672 HAMP domain TDMWS_17270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_17290 PF14698 Argininosuccinate lyase C-terminal TDMWS_17290 PF00206 Lyase TDMWS_17300 PF00764 Arginosuccinate synthase TDMWS_17310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TDMWS_17310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TDMWS_17330 PF02130 Uncharacterized protein family UPF0054 TDMWS_17340 PF02562 PhoH-like protein TDMWS_17360 PF06463 Molybdenum Cofactor Synthesis C TDMWS_17360 PF04055 Radical SAM superfamily TDMWS_17370 PF03916 Polysulphide reductase, NrfD TDMWS_17380 PF00037 4Fe-4S binding domain TDMWS_17380 PF13247 4Fe-4S dicluster domain TDMWS_17390 PF00384 Molybdopterin oxidoreductase TDMWS_17390 PF01568 Molydopterin dinucleotide binding domain TDMWS_17400 PF02085 Class III cytochrome C family TDMWS_17410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TDMWS_17460 PF01867 CRISPR associated protein Cas1 TDMWS_17460 PF01930 Domain of unknown function DUF83 TDMWS_17470 PF09827 CRISPR associated protein Cas2 TDMWS_17540 PF09820 Predicted AAA-ATPase TDMWS_17540 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_17550 PF02743 Cache domain TDMWS_17550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_17550 PF00672 HAMP domain TDMWS_17560 PF00581 Rhodanese-like domain TDMWS_17570 PF00708 Acylphosphatase TDMWS_17570 PF17788 HypF Kae1-like domain TDMWS_17570 PF01300 Telomere recombination TDMWS_17570 PF07503 HypF finger TDMWS_17580 PF01343 Peptidase family S49 TDMWS_17590 PF02913 FAD linked oxidases, C-terminal domain TDMWS_17590 PF01565 FAD binding domain TDMWS_17600 PF03652 Holliday junction resolvase TDMWS_17610 PF02618 YceG-like family TDMWS_17620 PF00072 Response regulator receiver domain TDMWS_17630 PF00672 HAMP domain TDMWS_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_17630 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_17630 PF01627 Hpt domain TDMWS_17630 PF00072 Response regulator receiver domain TDMWS_17630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TDMWS_17650 PF00696 Amino acid kinase family TDMWS_17660 PF07724 AAA domain (Cdc48 subfamily) TDMWS_17660 PF00004 ATPase family associated with various cellular activities (AAA) TDMWS_17670 PF00227 Proteasome subunit TDMWS_17680 PF01202 Shikimate kinase TDMWS_17690 PF00152 tRNA synthetases class II (D, K and N) TDMWS_17690 PF01336 OB-fold nucleic acid binding domain TDMWS_17700 PF12704 MacB-like periplasmic core domain TDMWS_17700 PF02687 FtsX-like permease family TDMWS_17710 PF00005 ABC transporter TDMWS_17720 PF01103 Surface antigen TDMWS_17720 PF07244 Surface antigen variable number repeat TDMWS_17740 PF00132 Bacterial transferase hexapeptide (six repeats) TDMWS_17740 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TDMWS_17750 PF07977 FabA-like domain TDMWS_17760 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TDMWS_17760 PF00132 Bacterial transferase hexapeptide (six repeats) TDMWS_17770 PF17930 LpxI N-terminal domain TDMWS_17770 PF06230 LpxI C-terminal domain TDMWS_17780 PF01258 Prokaryotic dksA/traR C4-type zinc finger TDMWS_17790 PF00133 tRNA synthetases class I (I, L, M and V) TDMWS_17790 PF08264 Anticodon-binding domain of tRNA TDMWS_17800 PF01252 Signal peptidase (SPase) II TDMWS_17810 PF01790 Prolipoprotein diacylglyceryl transferase TDMWS_17840 PF00005 ABC transporter TDMWS_17840 PF09383 NIL domain TDMWS_17860 PF04344 Chemotaxis phosphatase, CheZ TDMWS_17880 PF02899 Phage integrase, N-terminal SAM-like domain TDMWS_17880 PF00589 Phage integrase family TDMWS_17890 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_17890 PF17151 Periplasmic sensor domain TDMWS_17920 PF02481 DNA recombination-mediator protein A TDMWS_17920 PF17782 DprA winged helix domain TDMWS_17940 PF00484 Carbonic anhydrase TDMWS_17950 PF00291 Pyridoxal-phosphate dependent enzyme TDMWS_17970 PF02934 GatB/GatE catalytic domain TDMWS_17970 PF02637 GatB domain TDMWS_18000 PF01513 ATP-NAD kinase TDMWS_18010 PF08299 Bacterial dnaA protein helix-turn-helix TDMWS_18010 PF00308 Bacterial dnaA protein TDMWS_18010 PF11638 DnaA N-terminal domain TDMWS_18020 PF02511 Thymidylate synthase complementing protein TDMWS_18030 PF17864 RuvB AAA lid domain TDMWS_18030 PF05491 RuvB C-terminal winged helix domain TDMWS_18030 PF05496 Holliday junction DNA helicase RuvB P-loop domain TDMWS_18040 PF07499 RuvA, C-terminal domain TDMWS_18040 PF01330 RuvA N terminal domain TDMWS_18050 PF02075 Crossover junction endodeoxyribonuclease RuvC TDMWS_18060 PF01709 Transcriptional regulator TDMWS_18070 PF01728 FtsJ-like methyltransferase TDMWS_18090 PF17755 UvrA DNA-binding domain TDMWS_18090 PF17760 UvrA interaction domain TDMWS_18100 PF01370 NAD dependent epimerase/dehydratase family TDMWS_18110 PF03073 TspO/MBR family TDMWS_18130 PF00117 Glutamine amidotransferase class-I TDMWS_18140 PF00977 Histidine biosynthesis protein TDMWS_18150 PF00155 Aminotransferase class I and II TDMWS_18150 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDMWS_18150 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDMWS_18170 PF05443 ROS/MUCR transcriptional regulator protein TDMWS_18180 PF02310 B12 binding domain TDMWS_18180 PF04055 Radical SAM superfamily TDMWS_18210 PF03819 MazG nucleotide pyrophosphohydrolase domain TDMWS_18220 PF02224 Cytidylate kinase TDMWS_18230 PF00155 Aminotransferase class I and II TDMWS_18240 PF01370 NAD dependent epimerase/dehydratase family TDMWS_18250 PF12390 Selenocysteine synthase N terminal TDMWS_18250 PF03841 L-seryl-tRNA selenium transferase TDMWS_18260 PF08245 Mur ligase middle domain TDMWS_18300 PF04199 Putative cyclase TDMWS_18310 PF08534 Redoxin TDMWS_18320 PF09350 Domain of unknown function (DUF1992) TDMWS_18350 PF01645 Conserved region in glutamate synthase TDMWS_18350 PF13187 4Fe-4S dicluster domain TDMWS_18360 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDMWS_18360 PF18113 Rubredoxin binding C-terminal domain TDMWS_18390 PF02623 FliW protein TDMWS_18400 PF02599 Global regulator protein family TDMWS_18420 PF00460 Flagella basal body rod protein TDMWS_18420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_18420 PF00460 Flagella basal body rod protein TDMWS_18420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_18440 PF03061 Thioesterase superfamily TDMWS_18450 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TDMWS_18450 PF10135 Rod binding protein TDMWS_18460 PF02119 Flagellar P-ring protein TDMWS_18470 PF02107 Flagellar L-ring protein TDMWS_18490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_18490 PF00460 Flagella basal body rod protein TDMWS_18500 PF00460 Flagella basal body rod protein TDMWS_18500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_18520 PF07943 Penicillin-binding protein 5, C-terminal domain TDMWS_18520 PF00768 D-alanyl-D-alanine carboxypeptidase TDMWS_18530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TDMWS_18530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TDMWS_18530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TDMWS_18550 PF00849 RNA pseudouridylate synthase TDMWS_18550 PF01479 S4 domain TDMWS_18580 PF02151 UvrB/uvrC motif TDMWS_18580 PF00271 Helicase conserved C-terminal domain TDMWS_18580 PF04851 Type III restriction enzyme, res subunit TDMWS_18580 PF12344 Ultra-violet resistance protein B TDMWS_18580 PF17757 UvrB interaction domain TDMWS_18600 PF03120 NAD-dependent DNA ligase OB-fold domain TDMWS_18600 PF01653 NAD-dependent DNA ligase adenylation domain TDMWS_18600 PF00533 BRCA1 C Terminus (BRCT) domain TDMWS_18610 PF01113 Dihydrodipicolinate reductase, N-terminus TDMWS_18610 PF05173 Dihydrodipicolinate reductase, C-terminus TDMWS_18620 PF07726 ATPase family associated with various cellular activities (AAA) TDMWS_18620 PF17863 AAA lid domain TDMWS_18640 PF00072 Response regulator receiver domain TDMWS_18640 PF00196 Bacterial regulatory proteins, luxR family TDMWS_18650 PF13382 Adenine deaminase C-terminal domain TDMWS_18650 PF01979 Amidohydrolase family TDMWS_18660 PF00072 Response regulator receiver domain TDMWS_18660 PF00486 Transcriptional regulatory protein, C terminal TDMWS_18670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TDMWS_18670 PF02142 MGS-like domain TDMWS_18670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TDMWS_18680 PF00156 Phosphoribosyl transferase domain TDMWS_18690 PF00571 CBS domain TDMWS_18690 PF01380 SIS domain TDMWS_18710 PF00912 Transglycosylase TDMWS_18710 PF00905 Penicillin binding protein transpeptidase domain TDMWS_18710 PF17092 Penicillin-binding protein OB-like domain TDMWS_18740 PF13439 Glycosyltransferase Family 4 TDMWS_18740 PF00534 Glycosyl transferases group 1 TDMWS_18770 PF09820 Predicted AAA-ATPase TDMWS_18770 PF08011 PD-(D/E)XK nuclease superfamily TDMWS_18790 PF02397 Bacterial sugar transferase TDMWS_18800 PF01757 Acyltransferase family TDMWS_18820 PF00535 Glycosyl transferase family 2 TDMWS_18820 PF00534 Glycosyl transferases group 1 TDMWS_18840 PF00005 ABC transporter TDMWS_18840 PF14524 Wzt C-terminal domain TDMWS_18970 PF05567 Neisseria PilC beta-propeller domain TDMWS_18980 PF02954 Bacterial regulatory protein, Fis family TDMWS_18980 PF00072 Response regulator receiver domain TDMWS_18980 PF00158 Sigma-54 interaction domain TDMWS_18990 PF00391 PEP-utilising enzyme, mobile domain TDMWS_18990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDMWS_19000 PF00158 Sigma-54 interaction domain TDMWS_19000 PF02954 Bacterial regulatory protein, Fis family TDMWS_19000 PF00072 Response regulator receiver domain TDMWS_19030 PF01925 Sulfite exporter TauE/SafE TDMWS_19070 PF02954 Bacterial regulatory protein, Fis family TDMWS_19070 PF00072 Response regulator receiver domain TDMWS_19070 PF00158 Sigma-54 interaction domain TDMWS_19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_19080 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_19090 PF02954 Bacterial regulatory protein, Fis family TDMWS_19090 PF00158 Sigma-54 interaction domain TDMWS_19090 PF00072 Response regulator receiver domain TDMWS_19100 PF00072 Response regulator receiver domain TDMWS_19100 PF13188 PAS domain TDMWS_19100 PF08448 PAS fold TDMWS_19100 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_19100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_19120 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_19130 PF08402 TOBE domain TDMWS_19130 PF00005 ABC transporter TDMWS_19190 PF01472 PUA domain TDMWS_19190 PF00696 Amino acid kinase family TDMWS_19200 PF01018 GTP1/OBG TDMWS_19200 PF01926 50S ribosome-binding GTPase TDMWS_19210 PF01016 Ribosomal L27 protein TDMWS_19220 PF00829 Ribosomal prokaryotic L21 protein TDMWS_19250 PF00582 Universal stress protein family TDMWS_19270 PF00202 Aminotransferase class-III TDMWS_19280 PF02547 Queuosine biosynthesis protein TDMWS_19300 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDMWS_19300 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDMWS_19300 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDMWS_19330 PF08501 Shikimate dehydrogenase substrate binding domain TDMWS_19360 PF02684 Lipid-A-disaccharide synthetase TDMWS_19370 PF01648 4'-phosphopantetheinyl transferase superfamily TDMWS_19380 PF17384 RimP C-terminal SH3 domain TDMWS_19380 PF02576 RimP N-terminal domain TDMWS_19390 PF08529 NusA N-terminal domain TDMWS_19390 PF00575 S1 RNA binding domain TDMWS_19390 PF13184 NusA-like KH domain TDMWS_19400 PF00009 Elongation factor Tu GTP binding domain TDMWS_19400 PF11987 Translation-initiation factor 2 TDMWS_19400 PF04760 Translation initiation factor IF-2, N-terminal region TDMWS_19420 PF02033 Ribosome-binding factor A TDMWS_19430 PF01368 DHH family TDMWS_19430 PF02272 DHHA1 domain TDMWS_19440 PF16198 tRNA pseudouridylate synthase B C-terminal domain TDMWS_19440 PF01509 TruB family pseudouridylate synthase (N terminal domain) TDMWS_19450 PF00312 Ribosomal protein S15 TDMWS_19460 PF03725 3' exoribonuclease family, domain 2 TDMWS_19460 PF00013 KH domain TDMWS_19460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TDMWS_19460 PF01138 3' exoribonuclease family, domain 1 TDMWS_19460 PF00575 S1 RNA binding domain TDMWS_19480 PF00114 Pilin (bacterial filament) TDMWS_19480 PF07963 Prokaryotic N-terminal methylation motif TDMWS_19490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_19490 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_19490 PF00072 Response regulator receiver domain TDMWS_19490 PF13188 PAS domain TDMWS_19490 PF08448 PAS fold TDMWS_19500 PF00072 Response regulator receiver domain TDMWS_19520 PF03707 Bacterial signalling protein N terminal repeat TDMWS_19520 PF00563 EAL domain TDMWS_19520 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_19550 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TDMWS_19580 PF00749 tRNA synthetases class I (E and Q), catalytic domain TDMWS_19590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TDMWS_19590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TDMWS_19600 PF13686 DsrE/DsrF/DrsH-like family TDMWS_19610 PF00210 Ferritin-like domain TDMWS_19630 PF01022 Bacterial regulatory protein, arsR family TDMWS_19640 PF02321 Outer membrane efflux protein TDMWS_19650 PF00529 HlyD membrane-fusion protein of T1SS TDMWS_19650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TDMWS_19660 PF00873 AcrB/AcrD/AcrF family TDMWS_19670 PF01926 50S ribosome-binding GTPase TDMWS_19670 PF12631 MnmE helical domain TDMWS_19670 PF10396 GTP-binding protein TrmE N-terminus TDMWS_19680 PF10415 Fumarase C C-terminus TDMWS_19680 PF00206 Lyase TDMWS_19690 PF06968 Biotin and Thiamin Synthesis associated domain TDMWS_19690 PF04055 Radical SAM superfamily TDMWS_19700 PF02256 Iron hydrogenase small subunit TDMWS_19710 PF02906 Iron only hydrogenase large subunit, C-terminal domain TDMWS_19710 PF13187 4Fe-4S dicluster domain TDMWS_19760 PF03477 ATP cone domain TDMWS_19760 PF13597 Anaerobic ribonucleoside-triphosphate reductase TDMWS_19770 PF04055 Radical SAM superfamily TDMWS_19770 PF13186 Iron-sulfur cluster-binding domain TDMWS_19780 PF00291 Pyridoxal-phosphate dependent enzyme TDMWS_19790 PF01040 UbiA prenyltransferase family TDMWS_19800 PF00579 tRNA synthetases class I (W and Y) TDMWS_19800 PF01479 S4 domain TDMWS_19810 PF13277 YmdB-like protein TDMWS_19820 PF12072 Domain of unknown function (DUF3552) TDMWS_19820 PF01966 HD domain TDMWS_19820 PF00013 KH domain TDMWS_19850 PF12804 MobA-like NTP transferase domain TDMWS_19850 PF14602 Hexapeptide repeat of succinyl-transferase TDMWS_19850 PF00132 Bacterial transferase hexapeptide (six repeats) TDMWS_19860 PF03776 Septum formation topological specificity factor MinE TDMWS_19870 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDMWS_19880 PF03775 Septum formation inhibitor MinC, C-terminal domain TDMWS_19880 PF05209 Septum formation inhibitor MinC, N-terminal domain TDMWS_19890 PF09186 Domain of unknown function (DUF1949) TDMWS_19890 PF01205 Uncharacterized protein family UPF0029 TDMWS_19900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TDMWS_19930 PF01047 MarR family TDMWS_19950 PF00710 Asparaginase, N-terminal TDMWS_19950 PF17763 Glutaminase/Asparaginase C-terminal domain TDMWS_19960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TDMWS_19960 PF00672 HAMP domain TDMWS_19960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TDMWS_19960 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_19960 PF01627 Hpt domain TDMWS_19960 PF00072 Response regulator receiver domain TDMWS_19960 PF00072 Response regulator receiver domain TDMWS_19960 PF01627 Hpt domain TDMWS_19960 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_19960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_19960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_19960 PF00672 HAMP domain TDMWS_19970 PF01739 CheR methyltransferase, SAM binding domain TDMWS_19970 PF03705 CheR methyltransferase, all-alpha domain TDMWS_19980 PF01339 CheB methylesterase TDMWS_19990 PF00563 EAL domain TDMWS_19990 PF00360 Phytochrome region TDMWS_19990 PF01590 GAF domain TDMWS_19990 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_20010 PF00474 Sodium:solute symporter family TDMWS_20030 PF07733 Bacterial DNA polymerase III alpha NTPase domain TDMWS_20030 PF14579 Helix-hairpin-helix motif TDMWS_20030 PF02811 PHP domain TDMWS_20030 PF00929 Exonuclease TDMWS_20030 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TDMWS_20040 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_20040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_20040 PF08448 PAS fold TDMWS_20040 PF13188 PAS domain TDMWS_20040 PF00072 Response regulator receiver domain TDMWS_20050 PF01895 PhoU domain TDMWS_20060 PF00005 ABC transporter TDMWS_20070 PF16736 Single Cache-like TDMWS_20070 PF00989 PAS fold TDMWS_20070 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_20080 PF00486 Transcriptional regulatory protein, C terminal TDMWS_20080 PF00072 Response regulator receiver domain TDMWS_20090 PF00563 EAL domain TDMWS_20090 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_20090 PF13426 PAS domain TDMWS_20110 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_20120 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_20130 PF01699 Sodium/calcium exchanger protein TDMWS_20150 PF05932 Tir chaperone protein (CesT) family TDMWS_20270 PF00771 FHIPEP family TDMWS_20300 PF01740 STAS domain TDMWS_20330 PF02954 Bacterial regulatory protein, Fis family TDMWS_20330 PF00072 Response regulator receiver domain TDMWS_20330 PF00158 Sigma-54 interaction domain TDMWS_20360 PF13581 Histidine kinase-like ATPase domain TDMWS_20370 PF09084 NMT1/THI5 like TDMWS_20440 PF01514 Secretory protein of YscJ/FliF family TDMWS_20460 PF02108 Flagellar assembly protein FliH TDMWS_20470 PF18269 T3SS EscN ATPase C-terminal domain TDMWS_20470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDMWS_20470 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDMWS_20500 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDMWS_20510 PF00813 FliP family TDMWS_20530 PF01311 Bacterial export proteins, family 1 TDMWS_20540 PF01312 FlhB HrpN YscU SpaS Family TDMWS_20550 PF01699 Sodium/calcium exchanger protein TDMWS_20570 PF00580 UvrD/REP helicase N-terminal domain TDMWS_20570 PF13361 UvrD-like helicase C-terminal domain TDMWS_20580 PF00596 Class II Aldolase and Adducin N-terminal domain TDMWS_20590 PF00072 Response regulator receiver domain TDMWS_20590 PF04397 LytTr DNA-binding domain TDMWS_20600 PF07694 5TMR of 5TMR-LYT TDMWS_20600 PF06580 Histidine kinase TDMWS_20600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_20600 PF13492 GAF domain TDMWS_20610 PF02554 Carbon starvation protein CstA TDMWS_20620 PF00459 Inositol monophosphatase family TDMWS_20650 PF00850 Histone deacetylase domain TDMWS_20670 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_20680 PF00528 Binding-protein-dependent transport system inner membrane component TDMWS_20690 PF00005 ABC transporter TDMWS_20730 PF01507 Phosphoadenosine phosphosulfate reductase family TDMWS_20750 PF05167 Uncharacterised ACR (DUF711) TDMWS_20780 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_20790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDMWS_20790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDMWS_20790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDMWS_20790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDMWS_20800 PF02355 Protein export membrane protein TDMWS_20800 PF07549 SecD/SecF GG Motif TDMWS_20810 PF02355 Protein export membrane protein TDMWS_20810 PF07549 SecD/SecF GG Motif TDMWS_20820 PF02699 Preprotein translocase subunit TDMWS_20830 PF01435 Peptidase family M48 TDMWS_20840 PF00795 Carbon-nitrogen hydrolase TDMWS_20840 PF02540 NAD synthase TDMWS_20850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDMWS_20850 PF07498 Rho termination factor, N-terminal domain TDMWS_20850 PF07497 Rho termination factor, RNA-binding domain TDMWS_20870 PF01195 Peptidyl-tRNA hydrolase TDMWS_20880 PF01386 Ribosomal L25p family TDMWS_20880 PF14693 Ribosomal protein TL5, C-terminal domain TDMWS_20890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TDMWS_20890 PF14572 Phosphoribosyl synthetase-associated domain TDMWS_20900 PF00288 GHMP kinases N terminal domain TDMWS_20900 PF08544 GHMP kinases C terminal TDMWS_20910 PF13180 PDZ domain TDMWS_20970 PF01571 Aminomethyltransferase folate-binding domain TDMWS_20970 PF08669 Glycine cleavage T-protein C-terminal barrel domain TDMWS_20980 PF04452 RNA methyltransferase TDMWS_20990 PF13247 4Fe-4S dicluster domain TDMWS_21010 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TDMWS_21020 PF02641 Uncharacterized ACR, COG1993 TDMWS_21030 PF01906 Putative heavy-metal-binding TDMWS_21040 PF00535 Glycosyl transferase family 2 TDMWS_21060 PF01569 PAP2 superfamily TDMWS_21070 PF00825 Ribonuclease P TDMWS_21080 PF14849 YidC periplasmic domain TDMWS_21080 PF02096 60Kd inner membrane protein TDMWS_21090 PF14804 Jag N-terminus TDMWS_21090 PF01424 R3H domain TDMWS_21100 PF10396 GTP-binding protein TrmE N-terminus TDMWS_21100 PF12631 MnmE helical domain TDMWS_21100 PF01926 50S ribosome-binding GTPase TDMWS_21110 PF00114 Pilin (bacterial filament) TDMWS_21110 PF07963 Prokaryotic N-terminal methylation motif TDMWS_21120 PF01027 Inhibitor of apoptosis-promoting Bax1 TDMWS_21130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TDMWS_21140 PF00575 S1 RNA binding domain TDMWS_21140 PF08206 Ribonuclease B OB domain TDMWS_21140 PF00773 RNB domain TDMWS_21140 PF17876 Cold shock domain TDMWS_21150 PF00089 Trypsin TDMWS_21160 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TDMWS_21160 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TDMWS_21180 PF00465 Iron-containing alcohol dehydrogenase TDMWS_21190 PF00465 Iron-containing alcohol dehydrogenase TDMWS_21200 PF00989 PAS fold TDMWS_21200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_21200 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_21210 PF00158 Sigma-54 interaction domain TDMWS_21210 PF00072 Response regulator receiver domain TDMWS_21210 PF02954 Bacterial regulatory protein, Fis family TDMWS_21220 PF00011 Hsp20/alpha crystallin family TDMWS_21230 PF01515 Phosphate acetyl/butaryl transferase TDMWS_21240 PF10369 Small subunit of acetolactate synthase TDMWS_21240 PF01842 ACT domain TDMWS_21260 PF02666 Phosphatidylserine decarboxylase TDMWS_21290 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_21290 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDMWS_21290 PF00072 Response regulator receiver domain TDMWS_21290 PF00989 PAS fold TDMWS_21290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_21290 PF01627 Hpt domain TDMWS_21300 PF11849 Domain of unknown function (DUF3369) TDMWS_21310 PF05193 Peptidase M16 inactive domain TDMWS_21310 PF00675 Insulinase (Peptidase family M16) TDMWS_21310 PF08367 Peptidase M16C associated TDMWS_21320 PF01370 NAD dependent epimerase/dehydratase family TDMWS_21330 PF00842 Alanine racemase, C-terminal domain TDMWS_21330 PF01168 Alanine racemase, N-terminal domain TDMWS_21340 PF00437 Type II/IV secretion system protein TDMWS_21340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TDMWS_21350 PF00486 Transcriptional regulatory protein, C terminal TDMWS_21350 PF00072 Response regulator receiver domain TDMWS_21350 PF01627 Hpt domain TDMWS_21360 PF00072 Response regulator receiver domain TDMWS_21360 PF01627 Hpt domain TDMWS_21360 PF00512 His Kinase A (phospho-acceptor) domain TDMWS_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_21360 PF00672 HAMP domain TDMWS_21360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TDMWS_21370 PF00158 Sigma-54 interaction domain TDMWS_21370 PF02954 Bacterial regulatory protein, Fis family TDMWS_21370 PF00072 Response regulator receiver domain TDMWS_21380 PF12849 PBP superfamily domain TDMWS_21410 PF01588 Putative tRNA binding domain TDMWS_21430 PF00501 AMP-binding enzyme TDMWS_21430 PF14535 AMP-binding enzyme C-terminal domain TDMWS_21460 PF00392 Bacterial regulatory proteins, gntR family TDMWS_21460 PF07729 FCD domain TDMWS_21470 PF01070 FMN-dependent dehydrogenase TDMWS_21490 PF00484 Carbonic anhydrase TDMWS_21510 PF07963 Prokaryotic N-terminal methylation motif TDMWS_21510 PF00114 Pilin (bacterial filament) TDMWS_21570 PF01471 Putative peptidoglycan binding domain TDMWS_21570 PF13401 AAA domain TDMWS_21580 PF00437 Type II/IV secretion system protein TDMWS_21580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TDMWS_21590 PF00482 Type II secretion system (T2SS), protein F TDMWS_21650 PF00114 Pilin (bacterial filament) TDMWS_21650 PF07963 Prokaryotic N-terminal methylation motif TDMWS_21660 PF01339 CheB methylesterase TDMWS_21660 PF00072 Response regulator receiver domain TDMWS_21680 PF01739 CheR methyltransferase, SAM binding domain TDMWS_21680 PF03705 CheR methyltransferase, all-alpha domain TDMWS_21700 PF13614 AAA domain TDMWS_21720 PF00072 Response regulator receiver domain TDMWS_21730 PF00072 Response regulator receiver domain TDMWS_21730 PF01584 CheW-like domain TDMWS_21730 PF02895 Signal transducing histidine kinase, homodimeric domain TDMWS_21730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDMWS_21730 PF01627 Hpt domain TDMWS_21760 PF02896 PEP-utilising enzyme, TIM barrel domain TDMWS_21760 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDMWS_21760 PF00391 PEP-utilising enzyme, mobile domain TDMWS_21770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TDMWS_21790 PF03480 Bacterial extracellular solute-binding protein, family 7 TDMWS_21810 PF00990 Diguanylate cyclase, GGDEF domain TDMWS_21810 PF00563 EAL domain TDMWS_21810 PF03707 Bacterial signalling protein N terminal repeat TDMWS_21820 PF08269 Cache domain TDMWS_21820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDMWS_21840 PF01869 BadF/BadG/BcrA/BcrD ATPase family TDMWS_21850 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TDMWS_21860 PF16360 GTP-binding GTPase Middle Region TDMWS_21860 PF13167 GTP-binding GTPase N-terminal TDMWS_21860 PF01926 50S ribosome-binding GTPase TDMWS_21870 PF02142 MGS-like domain TDMWS_21870 PF01808 AICARFT/IMPCHase bienzyme TDMWS_21890 PF00460 Flagella basal body rod protein TDMWS_21900 PF00460 Flagella basal body rod protein TDMWS_21900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDMWS_21910 PF02049 Flagellar hook-basal body complex protein FliE TDMWS_21920 PF01514 Secretory protein of YscJ/FliF family TDMWS_21920 PF08345 Flagellar M-ring protein C-terminal TDMWS_21930 PF01706 FliG C-terminal domain TDMWS_21930 PF14841 FliG middle domain TDMWS_21930 PF14842 FliG N-terminal domain TDMWS_21950 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDMWS_21950 PF18269 T3SS EscN ATPase C-terminal domain TDMWS_21950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDMWS_21960 PF01435 Peptidase family M48