THEYE_A0013	SM00937	THEYE_A0013
THEYE_A0015	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0015	SM00760	Bacterial dnaA protein helix-turn-helix domain
THEYE_A0016	SM00480	DNA polymerase III beta subunit
THEYE_A0017	SM00387	Histidine kinase-like ATPases
THEYE_A0017	SM00433	TopoisomeraseII
THEYE_A0032	SM00479	THEYE_A0032
THEYE_A0033	SM00100	Cyclic nucleotide-monophosphate binding domain
THEYE_A0033	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A0034	SM00100	Cyclic nucleotide-monophosphate binding domain
THEYE_A0034	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A0037	SM00479	THEYE_A0037
THEYE_A0039	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0039	SM00448	cheY-homologous receiver domain
THEYE_A0040	SM00881	CoA binding domain
THEYE_A0041	SM00434	DNA Topoisomerase IV
THEYE_A0042	SM00834	Putative regulatory protein
THEYE_A0047	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0072	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A0073	SM00670	Large family of predicted nucleotide-binding domains
THEYE_A0078	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0079	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0081	SM00642	Alpha-amylase domain
THEYE_A0093	SM00935	Outer membrane protein (OmpH-like)
THEYE_A0101	SM00822	THEYE_A0101
THEYE_A0102	SM00823	Phosphopantetheine attachment site
THEYE_A0103	SM00825	Beta-ketoacyl synthase
THEYE_A0109	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THEYE_A0111	SM00996	S-adenosyl-L-homocysteine hydrolase
THEYE_A0111	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
THEYE_A0113	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THEYE_A0114	SM01329	THEYE_A0114
THEYE_A0121	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0124	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0124	SM00448	cheY-homologous receiver domain
THEYE_A0125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0125	SM00387	Histidine kinase-like ATPases
THEYE_A0125	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0126	SM00387	Histidine kinase-like ATPases
THEYE_A0127	SM00463	Small MutS-related domain
THEYE_A0127	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
THEYE_A0127	SM00534	ATPase domain of DNA mismatch repair MUTS family
THEYE_A0132	SM00883	Chaperonin 10 Kd subunit
THEYE_A0134	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0142	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0145	SM00387	Histidine kinase-like ATPases
THEYE_A0146	SM00448	cheY-homologous receiver domain
THEYE_A0153	SM00318	Staphylococcal nuclease homologues
THEYE_A0156	SM00448	cheY-homologous receiver domain
THEYE_A0156	SM00862	Transcriptional regulatory protein, C terminal
THEYE_A0157	SM00387	Histidine kinase-like ATPases
THEYE_A0157	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0160	SM00849	Metallo-beta-lactamase superfamily
THEYE_A0164	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0166	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A0170	SM00316	Ribosomal protein S1-like RNA-binding domain
THEYE_A0171	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0172	SM00052	Putative diguanylate phosphodiesterase
THEYE_A0174	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0175	SM00849	Metallo-beta-lactamase superfamily
THEYE_A0178	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0181	SM00448	cheY-homologous receiver domain
THEYE_A0181	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A0182	SM00448	cheY-homologous receiver domain
THEYE_A0183	SM00387	Histidine kinase-like ATPases
THEYE_A0183	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0188	SM00091	PAS domain
THEYE_A0194	SM00100	Cyclic nucleotide-monophosphate binding domain
THEYE_A0194	SM00419	helix_turn_helix, cAMP Regulatory protein
THEYE_A0196	SM00156	Protein phosphatase 2A homologues, catalytic domain.
THEYE_A0197	SM00567	E-Z type HEAT repeats
THEYE_A0198	SM01007	Class II Aldolase and Adducin N-terminal domain
THEYE_A0200	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THEYE_A0202	SM00363	S4 RNA-binding domain
THEYE_A0206	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A0206	SM01240	THEYE_A0206
THEYE_A0213	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0215	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0219	SM00563	Phosphate acyltransferases
THEYE_A0221	SM01207	THEYE_A0221
THEYE_A0225	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A0232	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0241	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0248	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
THEYE_A0251	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0251	SM01086	C-terminal, D2-small domain, of ClpB protein
THEYE_A0256	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0256	SM00994	ClpX C4-type zinc finger
THEYE_A0256	SM01086	C-terminal, D2-small domain, of ClpB protein
THEYE_A0259	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0262	SM00387	Histidine kinase-like ATPases
THEYE_A0262	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0263	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0263	SM00448	cheY-homologous receiver domain
THEYE_A0270	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0276	SM00363	S4 RNA-binding domain
THEYE_A0281	SM01323	THEYE_A0281
THEYE_A0282	SM00849	Metallo-beta-lactamase superfamily
THEYE_A0286	SM00530	Helix-turn-helix XRE-family like proteins 
THEYE_A0317	SM00028	Tetratricopeptide repeats
THEYE_A0320	SM00481	DNA polymerase alpha chain like domain
THEYE_A0323	SM00028	Tetratricopeptide repeats
THEYE_A0325	SM00740	THEYE_A0325
THEYE_A0333	SM00967	RNA 2'-O ribose methyltransferase substrate binding
THEYE_A0334	SM00530	Helix-turn-helix XRE-family like proteins 
THEYE_A0337	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0341	SM01005	Alanine racemase, C-terminal domain
THEYE_A0350	SM00855	Phosphoglycerate mutase family
THEYE_A0361	SM00852	Probable molybdopterin binding domain
THEYE_A0369	SM00937	THEYE_A0369
THEYE_A0373	SM00091	PAS domain
THEYE_A0373	SM00387	Histidine kinase-like ATPases
THEYE_A0374	SM00421	helix_turn_helix, Lux Regulon
THEYE_A0374	SM00448	cheY-homologous receiver domain
THEYE_A0390	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0391	SM00073	Histidine Phosphotransfer domain
THEYE_A0391	SM00260	Two component signalling adaptor domain
THEYE_A0391	SM00387	Histidine kinase-like ATPases
THEYE_A0391	SM00448	cheY-homologous receiver domain
THEYE_A0392	SM00260	Two component signalling adaptor domain
THEYE_A0393	SM00448	cheY-homologous receiver domain
THEYE_A0394	SM00448	cheY-homologous receiver domain
THEYE_A0395	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0398	SM00878	Biotin carboxylase C-terminal domain
THEYE_A0400	SM00841	Elongation factor P, C-terminal
THEYE_A0400	SM01185	THEYE_A0400
THEYE_A0403	SM01409	THEYE_A0403
THEYE_A0404	SM00072	Guanylate kinase homologues.
THEYE_A0407	SM01152	THEYE_A0407
THEYE_A0408	SM00014	Acid phosphatase homologues
THEYE_A0417	SM00448	cheY-homologous receiver domain
THEYE_A0417	SM00862	Transcriptional regulatory protein, C terminal
THEYE_A0418	SM00965	Secretin and TonB N terminus short domain
THEYE_A0424	SM00984	UDP binding domain
THEYE_A0432	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
THEYE_A0438	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0439	SM00487	DEAD-like helicases superfamily
THEYE_A0439	SM00490	helicase superfamily c-terminal domain
THEYE_A0440	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0455	SM00829	Enoylreductase
THEYE_A0460	SM00448	cheY-homologous receiver domain
THEYE_A0460	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A0465	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
THEYE_A0465	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THEYE_A0479	SM00858	THEYE_A0479
THEYE_A0496	SM00829	Enoylreductase
THEYE_A0505	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
THEYE_A0525	SM00831	Cation transporter/ATPase, N-terminus
THEYE_A0533	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0536	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
THEYE_A0539	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A0549	SM00363	S4 RNA-binding domain
THEYE_A0554	SM00838	Elongation factor G C-terminus
THEYE_A0554	SM00889	Elongation factor G, domain IV
THEYE_A0555	SM00998	Adenylosuccinate lyase C-terminus
THEYE_A0566	SM00198	SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
THEYE_A0571	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A0572	SM00831	Cation transporter/ATPase, N-terminus
THEYE_A0576	SM00670	Large family of predicted nucleotide-binding domains
THEYE_A0585	SM01228	THEYE_A0585
THEYE_A0589	SM00014	Acid phosphatase homologues
THEYE_A0591	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THEYE_A0604	SM00448	cheY-homologous receiver domain
THEYE_A0604	SM00862	Transcriptional regulatory protein, C terminal
THEYE_A0606	SM00883	Chaperonin 10 Kd subunit
THEYE_A0607	SM00257	Lysin motif
THEYE_A0609	SM00481	DNA polymerase alpha chain like domain
THEYE_A0611	SM00448	cheY-homologous receiver domain
THEYE_A0612	SM00091	PAS domain
THEYE_A0612	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0612	SM00387	Histidine kinase-like ATPases
THEYE_A0612	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0619	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A0620	SM00267	diguanylate cyclase
THEYE_A0623	SM00028	Tetratricopeptide repeats
THEYE_A0625	SM00903	Flavin reductase like domain
THEYE_A0626	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0628	SM00836	DALR anticodon binding domain
THEYE_A0628	SM01016	Arginyl tRNA synthetase N terminal dom
THEYE_A0629	SM01211	THEYE_A0629
THEYE_A0631	SM00357	Cold shock protein domain
THEYE_A0631	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0631	SM00959	Rho termination factor, N-terminal domain
THEYE_A0640	SM00487	DEAD-like helicases superfamily
THEYE_A0649	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0650	SM00917	LeuA allosteric (dimerisation) domain
THEYE_A0658	SM00986	Uracil DNA glycosylase superfamily
THEYE_A0658	SM00987	UreE urease accessory protein, C-terminal domain 
THEYE_A0664	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0677	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0682	SM00834	Putative regulatory protein
THEYE_A0687	SM00487	DEAD-like helicases superfamily
THEYE_A0687	SM00490	helicase superfamily c-terminal domain
THEYE_A0690	SM01004	Delta-aminolevulinic acid dehydratase
THEYE_A0693	SM00478	endonuclease III
THEYE_A0693	SM00525	THEYE_A0693
THEYE_A0695	SM00267	diguanylate cyclase
THEYE_A0696	SM00487	DEAD-like helicases superfamily
THEYE_A0696	SM00490	helicase superfamily c-terminal domain
THEYE_A0697	SM00316	Ribosomal protein S1-like RNA-binding domain
THEYE_A0702	SM00028	Tetratricopeptide repeats
THEYE_A0704	SM00904	Riboflavin kinase
THEYE_A0706	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
THEYE_A0706	SM00534	ATPase domain of DNA mismatch repair MUTS family
THEYE_A0707	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0712	SM00091	PAS domain
THEYE_A0712	SM00387	Histidine kinase-like ATPases
THEYE_A0724	SM00091	PAS domain
THEYE_A0724	SM00387	Histidine kinase-like ATPases
THEYE_A0724	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0725	SM00448	cheY-homologous receiver domain
THEYE_A0727	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THEYE_A0727	SM00866	THEYE_A0727
THEYE_A0733	SM00448	cheY-homologous receiver domain
THEYE_A0734	SM00448	cheY-homologous receiver domain
THEYE_A0735	SM00767	THEYE_A0735
THEYE_A0739	SM00448	cheY-homologous receiver domain
THEYE_A0741	SM00448	cheY-homologous receiver domain
THEYE_A0742	SM00387	Histidine kinase-like ATPases
THEYE_A0742	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0743	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0743	SM00448	cheY-homologous receiver domain
THEYE_A0744	SM00387	Histidine kinase-like ATPases
THEYE_A0744	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0746	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0746	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0747	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0747	SM00387	Histidine kinase-like ATPases
THEYE_A0747	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0751	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A0751	SM00387	Histidine kinase-like ATPases
THEYE_A0751	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A0752	SM00448	cheY-homologous receiver domain
THEYE_A0752	SM00862	Transcriptional regulatory protein, C terminal
THEYE_A0755	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0758	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0758	SM00448	cheY-homologous receiver domain
THEYE_A0764	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0765	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0769	SM00919	Malic enzyme, NAD binding domain
THEYE_A0769	SM01274	THEYE_A0769
THEYE_A0777	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THEYE_A0777	SM01080	THEYE_A0777
THEYE_A0785	SM00917	LeuA allosteric (dimerisation) domain
THEYE_A0798	SM00507	HNH nucleases
THEYE_A0807	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0809	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0809	SM00876	Biotin and Thiamin Synthesis associated domain
THEYE_A0811	SM00046	Diacylglycerol kinase catalytic domain (presumed)
THEYE_A0840	SM00028	Tetratricopeptide repeats
THEYE_A0845	SM00506	Appr-1"-p processing enzyme
THEYE_A0850	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0853	SM00028	Tetratricopeptide repeats
THEYE_A0857	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0859	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0859	SM00464	Found in ATP-dependent protease La (LON)
THEYE_A0869	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A0876	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0877	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THEYE_A0879	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0883	SM00448	cheY-homologous receiver domain
THEYE_A0888	SM00387	Histidine kinase-like ATPases
THEYE_A0889	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0889	SM00448	cheY-homologous receiver domain
THEYE_A0895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A0896	SM00977	TilS substrate C-terminal domain
THEYE_A0904	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A0925	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A0933	SM01130	THEYE_A0933
THEYE_A0938	SM00788	Adenylosuccinate synthetase
THEYE_A0948	SM00382	ATPases associated with a variety of cellular activities
THEYE_A0954	SM00861	Transketolase, pyrimidine binding domain
THEYE_A0961	SM01001	AIR carboxylase
THEYE_A0964	SM00899	THEYE_A0964
THEYE_A0965	SM00899	THEYE_A0965
THEYE_A0967	SM00529	Helix-turn-helix diphteria tox regulatory element
THEYE_A0997	SM00028	Tetratricopeptide repeats
THEYE_A0998	SM00984	UDP binding domain
THEYE_A1004	SM01192	THEYE_A1004
THEYE_A1004	SM01193	THEYE_A1004
THEYE_A1009	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A1009	SM00954	Region found in RelA / SpoT proteins
THEYE_A1011	SM00460	Transglutaminase/protease-like homologues
THEYE_A1014	SM01131	THEYE_A1014
THEYE_A1021	SM00957	SecA DEAD-like domain
THEYE_A1021	SM00958	SecA preprotein cross-linking domain
THEYE_A1023	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A1024	SM00829	Enoylreductase
THEYE_A1025	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THEYE_A1028	SM00400	zinc finger
THEYE_A1028	SM00493	THEYE_A1028
THEYE_A1037	SM00363	S4 RNA-binding domain
THEYE_A1038	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1048	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1049	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1066	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
THEYE_A1066	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
THEYE_A1066	SM00493	THEYE_A1066
THEYE_A1068	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1070	SM00493	THEYE_A1070
THEYE_A1072	SM00316	Ribosomal protein S1-like RNA-binding domain
THEYE_A1072	SM00357	Cold shock protein domain
THEYE_A1072	SM00955	THEYE_A1072
THEYE_A1074	SM00327	von Willebrand factor (vWF) type A domain
THEYE_A1074	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1075	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1080	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1088	SM00487	DEAD-like helicases superfamily
THEYE_A1106	SM00487	DEAD-like helicases superfamily
THEYE_A1106	SM00490	helicase superfamily c-terminal domain
THEYE_A1106	SM00982	THEYE_A1106
THEYE_A1106	SM01058	CarD-like/TRCF domain
THEYE_A1107	SM00028	Tetratricopeptide repeats
THEYE_A1109	SM00849	Metallo-beta-lactamase superfamily
THEYE_A1110	SM00062	Bacterial periplasmic substrate-binding proteins
THEYE_A1111	SM00387	Histidine kinase-like ATPases
THEYE_A1111	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1112	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1112	SM00448	cheY-homologous receiver domain
THEYE_A1113	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A1128	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THEYE_A1142	SM00450	Rhodanese Homology Domain
THEYE_A1151	SM00845	GatB domain
THEYE_A1157	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THEYE_A1168	SM00450	Rhodanese Homology Domain
THEYE_A1169	SM00450	Rhodanese Homology Domain
THEYE_A1198	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
THEYE_A1202	SM00852	Probable molybdopterin binding domain
THEYE_A1225	SM01234	THEYE_A1225
THEYE_A1229	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
THEYE_A1230	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1235	SM00422	helix_turn_helix, mercury resistance
THEYE_A1236	SM00411	bacterial (prokaryotic) histone like domain
THEYE_A1240	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
THEYE_A1242	SM00851	MGS-like domain
THEYE_A1242	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
THEYE_A1243	SM00798	AICARFT/IMPCHase bienzyme
THEYE_A1243	SM00851	MGS-like domain
THEYE_A1245	SM01209	THEYE_A1245
THEYE_A1245	SM01210	THEYE_A1245
THEYE_A1247	SM00387	Histidine kinase-like ATPases
THEYE_A1247	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1250	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1266	SM00518	AP endonuclease family 2
THEYE_A1273	SM00834	Putative regulatory protein
THEYE_A1278	SM01329	THEYE_A1278
THEYE_A1279	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A1279	SM01091	Transporter associated domain
THEYE_A1290	SM00899	THEYE_A1290
THEYE_A1300	SM00257	Lysin motif
THEYE_A1301	SM00852	Probable molybdopterin binding domain
THEYE_A1312	SM00849	Metallo-beta-lactamase superfamily
THEYE_A1312	SM01027	Beta-Casp domain
THEYE_A1314	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1315	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1316	SM00864	Tubulin/FtsZ family, GTPase domain
THEYE_A1316	SM00865	Tubulin/FtsZ family, C-terminal domain
THEYE_A1317	SM00842	Cell division protein FtsA
THEYE_A1319	SM01209	THEYE_A1319
THEYE_A1337	SM00387	Histidine kinase-like ATPases
THEYE_A1337	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1337	SM00448	cheY-homologous receiver domain
THEYE_A1338	SM00448	cheY-homologous receiver domain
THEYE_A1339	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A1339	SM00387	Histidine kinase-like ATPases
THEYE_A1339	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1339	SM00448	cheY-homologous receiver domain
THEYE_A1342	SM00322	K homology RNA-binding domain
THEYE_A1342	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A1344	SM00486	DNA polymerase type-B family
THEYE_A1346	SM00663	RNA polymerase I subunit A N-terminus
THEYE_A1351	SM00649	Ribosomal protein L11/L12
THEYE_A1352	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
THEYE_A1352	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THEYE_A1360	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A1373	SM00387	Histidine kinase-like ATPases
THEYE_A1377	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1377	SM00448	cheY-homologous receiver domain
THEYE_A1378	SM00091	PAS domain
THEYE_A1378	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A1378	SM00387	Histidine kinase-like ATPases
THEYE_A1378	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1397	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1397	SM01086	C-terminal, D2-small domain, of ClpB protein
THEYE_A1402	SM00448	cheY-homologous receiver domain
THEYE_A1402	SM00862	Transcriptional regulatory protein, C terminal
THEYE_A1403	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A1403	SM00387	Histidine kinase-like ATPases
THEYE_A1403	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1404	SM00054	EF-hand, calcium binding motif
THEYE_A1407	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1416	SM00873	B3/4 domain
THEYE_A1416	SM00874	tRNA synthetase B5 domain
THEYE_A1416	SM00896	Ferredoxin-fold anticodon binding domain
THEYE_A1421	SM00662	RNA polymerases D
THEYE_A1422	SM00363	S4 RNA-binding domain
THEYE_A1422	SM01390	THEYE_A1422
THEYE_A1425	SM00316	Ribosomal protein S1-like RNA-binding domain
THEYE_A1435	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THEYE_A1436	SM01374	THEYE_A1436
THEYE_A1440	SM00322	K homology RNA-binding domain
THEYE_A1443	SM01382	THEYE_A1443
THEYE_A1443	SM01383	THEYE_A1443
THEYE_A1447	SM01403	THEYE_A1447
THEYE_A1449	SM00838	Elongation factor G C-terminus
THEYE_A1449	SM00889	Elongation factor G, domain IV
THEYE_A1455	SM01400	THEYE_A1455
THEYE_A1458	SM00028	Tetratricopeptide repeats
THEYE_A1467	SM00646	THEYE_A1467
THEYE_A1474	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A1474	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A1475	SM00244	prohibitin homologues
THEYE_A1481	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A1481	SM00245	tail specific protease
THEYE_A1484	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1485	SM00861	Transketolase, pyrimidine binding domain
THEYE_A1487	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
THEYE_A1487	SM00475	5'-3' exonuclease
THEYE_A1487	SM00482	DNA polymerase A domain
THEYE_A1490	SM00448	cheY-homologous receiver domain
THEYE_A1491	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THEYE_A1491	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THEYE_A1491	SM00091	PAS domain
THEYE_A1491	SM00387	Histidine kinase-like ATPases
THEYE_A1491	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1495	SM00387	Histidine kinase-like ATPases
THEYE_A1495	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1496	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1496	SM00448	cheY-homologous receiver domain
THEYE_A1503	SM00028	Tetratricopeptide repeats
THEYE_A1520	SM00861	Transketolase, pyrimidine binding domain
THEYE_A1525	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1525	SM01086	C-terminal, D2-small domain, of ClpB protein
THEYE_A1533	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1534	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A1538	SM00679	Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.
THEYE_A1540	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THEYE_A1540	SM00267	diguanylate cyclase
THEYE_A1552	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A1557	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1559	SM00650	Ribosomal RNA adenine dimethylases
THEYE_A1563	SM00260	Two component signalling adaptor domain
THEYE_A1570	SM00670	Large family of predicted nucleotide-binding domains
THEYE_A1575	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1580	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THEYE_A1583	SM00849	Metallo-beta-lactamase superfamily
THEYE_A1584	SM00893	Electron transfer flavoprotein domain
THEYE_A1585	SM00893	Electron transfer flavoprotein domain
THEYE_A1586	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THEYE_A1588	SM00562	THEYE_A1588
THEYE_A1591	SM00448	cheY-homologous receiver domain
THEYE_A1591	SM00850	LytTr DNA-binding domain
THEYE_A1592	SM00387	Histidine kinase-like ATPases
THEYE_A1594	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1602	SM00881	CoA binding domain
THEYE_A1622	SM00670	Large family of predicted nucleotide-binding domains
THEYE_A1627	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1632	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THEYE_A1635	SM00849	Metallo-beta-lactamase superfamily
THEYE_A1636	SM00893	Electron transfer flavoprotein domain
THEYE_A1637	SM00893	Electron transfer flavoprotein domain
THEYE_A1638	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THEYE_A1640	SM00562	THEYE_A1640
THEYE_A1643	SM00448	cheY-homologous receiver domain
THEYE_A1643	SM00850	LytTr DNA-binding domain
THEYE_A1644	SM00387	Histidine kinase-like ATPases
THEYE_A1646	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1654	SM00881	CoA binding domain
THEYE_A1677	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1680	SM00930	THEYE_A1680
THEYE_A1685	SM01230	THEYE_A1685
THEYE_A1691	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
THEYE_A1697	SM00487	DEAD-like helicases superfamily
THEYE_A1699	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THEYE_A1703	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THEYE_A1703	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1706	SM00938	Nitrogen regulatory protein P-II
THEYE_A1709	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THEYE_A1710	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1711	SM00938	Nitrogen regulatory protein P-II
THEYE_A1712	SM00938	Nitrogen regulatory protein P-II
THEYE_A1718	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1718	SM00876	Biotin and Thiamin Synthesis associated domain
THEYE_A1721	SM00876	Biotin and Thiamin Synthesis associated domain
THEYE_A1725	SM00902	Iron hydrogenase small subunit
THEYE_A1727	SM00902	Iron hydrogenase small subunit
THEYE_A1727	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THEYE_A1728	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THEYE_A1738	SM00878	Biotin carboxylase C-terminal domain
THEYE_A1741	SM00028	Tetratricopeptide repeats
THEYE_A1741	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A1742	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1745	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1755	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1757	SM00271	DnaJ molecular chaperone homology domain
THEYE_A1763	SM00830	Chorismate mutase type II
THEYE_A1770	SM00316	Ribosomal protein S1-like RNA-binding domain
THEYE_A1772	SM00411	bacterial (prokaryotic) histone like domain
THEYE_A1773	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1780	SM00448	cheY-homologous receiver domain
THEYE_A1782	SM00098	Alkaline phosphatase homologues
THEYE_A1784	SM00481	DNA polymerase alpha chain like domain
THEYE_A1785	SM00052	Putative diguanylate phosphodiesterase
THEYE_A1786	SM00267	diguanylate cyclase
THEYE_A1792	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1801	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THEYE_A1801	SM00387	Histidine kinase-like ATPases
THEYE_A1801	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1802	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1802	SM00448	cheY-homologous receiver domain
THEYE_A1814	SM00014	Acid phosphatase homologues
THEYE_A1823	SM00411	bacterial (prokaryotic) histone like domain
THEYE_A1826	SM01387	THEYE_A1826
THEYE_A1827	SM00316	Ribosomal protein S1-like RNA-binding domain
THEYE_A1827	SM00322	K homology RNA-binding domain
THEYE_A1839	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1839	SM00962	SRP54-type protein, GTPase domain
THEYE_A1839	SM00963	SRP54-type protein, helical bundle domain
THEYE_A1849	SM00530	Helix-turn-helix XRE-family like proteins 
THEYE_A1855	SM00530	Helix-turn-helix XRE-family like proteins 
THEYE_A1863	SM01078	THEYE_A1863
THEYE_A1889	SM00465	GIY-YIG type nucleases (URI domain)
THEYE_A1890	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THEYE_A1890	SM01080	THEYE_A1890
THEYE_A1892	SM00028	Tetratricopeptide repeats
THEYE_A1896	SM00460	Transglutaminase/protease-like homologues
THEYE_A1901	SM00028	Tetratricopeptide repeats
THEYE_A1901	SM00710	Parallel beta-helix repeats
THEYE_A1909	SM00028	Tetratricopeptide repeats
THEYE_A1909	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THEYE_A1913	SM00028	Tetratricopeptide repeats
THEYE_A1917	SM00100	Cyclic nucleotide-monophosphate binding domain
THEYE_A1923	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1924	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1924	SM00962	SRP54-type protein, GTPase domain
THEYE_A1924	SM00963	SRP54-type protein, helical bundle domain
THEYE_A1928	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1928	SM01086	C-terminal, D2-small domain, of ClpB protein
THEYE_A1929	SM00422	helix_turn_helix, mercury resistance
THEYE_A1930	SM00271	DnaJ molecular chaperone homology domain
THEYE_A1934	SM00267	diguanylate cyclase
THEYE_A1936	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
THEYE_A1938	SM00091	PAS domain
THEYE_A1938	SM00387	Histidine kinase-like ATPases
THEYE_A1938	SM00388	His Kinase A (phosphoacceptor) domain
THEYE_A1938	SM00448	cheY-homologous receiver domain
THEYE_A1953	SM00116	Domain in cystathionine beta-synthase and other proteins.
THEYE_A1966	SM00966	SpoVT / AbrB like domain 
THEYE_A1975	SM00840	THEYE_A1975
THEYE_A1976	SM00967	RNA 2'-O ribose methyltransferase substrate binding
THEYE_A1980	SM00382	ATPases associated with a variety of cellular activities
THEYE_A1980	SM00843	THEYE_A1980
THEYE_A1982	SM00357	Cold shock protein domain
THEYE_A1983	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A1988	SM00232	JAB/MPN domain
THEYE_A1991	SM00470	ParB-like nuclease domain
THEYE_A2000	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THEYE_A2000	SM00292	breast cancer carboxy-terminal domain
THEYE_A2000	SM00532	Ligase N family
THEYE_A2004	SM00382	ATPases associated with a variety of cellular activities
THEYE_A2005	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THEYE_A2005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A2006	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THEYE_A2006	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A2007	SM00849	Metallo-beta-lactamase superfamily
THEYE_A2008	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THEYE_A2008	SM01080	THEYE_A2008
THEYE_A2039	SM00487	DEAD-like helicases superfamily
THEYE_A2039	SM00490	helicase superfamily c-terminal domain
THEYE_A2048	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
THEYE_A2060	SM00858	THEYE_A2060
THEYE_A2064	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THEYE_A2065	SM00448	cheY-homologous receiver domain
THEYE_A2066	SM00260	Two component signalling adaptor domain
THEYE_A2067	SM00073	Histidine Phosphotransfer domain
THEYE_A2067	SM00260	Two component signalling adaptor domain
THEYE_A2067	SM00387	Histidine kinase-like ATPases
THEYE_A2067	SM01231	THEYE_A2067
THEYE_A2068	SM00448	cheY-homologous receiver domain
THEYE_A2069	SM00448	cheY-homologous receiver domain
THEYE_A2070	SM00138	Methyltransferase, chemotaxis proteins 
THEYE_A2071	SM00567	E-Z type HEAT repeats
THEYE_A2074	SM00962	SRP54-type protein, GTPase domain
THEYE_A2083	SM00853	MutL C terminal dimerisation domain
THEYE_A2083	SM01340	THEYE_A2083
THEYE_A2087	SM00382	ATPases associated with a variety of cellular activities
THEYE_A2092	SM00028	Tetratricopeptide repeats
THEYE_A2094	SM00382	ATPases associated with a variety of cellular activities
THEYE_A2096	SM00729	Elongator protein 3, MiaB family, Radical SAM
THEYE_A2097	SM00028	Tetratricopeptide repeats
THEYE_A2099	SM00836	DALR anticodon binding domain
