locus-tag class description trd_0002 PF09115 DNA polymerase III, delta subunit, C terminal trd_0006 PF00291 Pyridoxal-phosphate dependent enzyme trd_0006 PF13291 ACT domain trd_0010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family trd_0011 PF01965 DJ-1/PfpI family trd_0013 PF13732 Domain of unknown function (DUF4162) trd_0013 PF00005 ABC transporter trd_0014 PF00588 SpoU rRNA Methylase family trd_0014 PF12105 SpoU, rRNA methylase, C-terminal trd_0020 PF18019 HD domain trd_0020 PF00271 Helicase conserved C-terminal domain trd_0020 PF00270 DEAD/DEAH box helicase trd_0022 PF01867 CRISPR associated protein Cas1 trd_0023 PF00586 AIR synthase related protein, N-terminal domain trd_0023 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain trd_0023 PF02769 AIR synthase related protein, C-terminal domain trd_0024 PF09827 CRISPR associated protein Cas2 trd_0025 PF01174 SNO glutamine amidotransferase family trd_0026 PF01680 SOR/SNZ family trd_0027 PF00155 Aminotransferase class I and II trd_0027 PF00392 Bacterial regulatory proteins, gntR family trd_0031 PF00132 Bacterial transferase hexapeptide (six repeats) trd_0031 PF12804 MobA-like NTP transferase domain trd_0032 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase trd_0032 PF14572 Phosphoribosyl synthetase-associated domain trd_0033 PF00571 CBS domain trd_0033 PF03471 Transporter associated domain trd_0034 PF00296 Luciferase-like monooxygenase trd_0035 PF08279 HTH domain trd_0035 PF03099 Biotin/lipoate A/B protein ligase family trd_0035 PF02237 Biotin protein ligase C terminal domain trd_0039 PF02771 Acyl-CoA dehydrogenase, N-terminal domain trd_0039 PF00441 Acyl-CoA dehydrogenase, C-terminal domain trd_0039 PF02770 Acyl-CoA dehydrogenase, middle domain trd_0040 PF00132 Bacterial transferase hexapeptide (six repeats) trd_0041 PF00378 Enoyl-CoA hydratase/isomerase trd_0042 PF01012 Electron transfer flavoprotein domain trd_0043 PF01012 Electron transfer flavoprotein domain trd_0043 PF00766 Electron transfer flavoprotein FAD-binding domain trd_0047 PF00583 Acetyltransferase (GNAT) family trd_0048 PF00563 EAL domain trd_0048 PF00990 Diguanylate cyclase, GGDEF domain trd_0048 PF08447 PAS fold trd_0048 PF08448 PAS fold trd_0049 PF13735 tRNA nucleotidyltransferase domain 2 putative trd_0049 PF01743 Poly A polymerase head domain trd_0049 PF12627 Probable RNA and SrmB- binding site of polymerase A trd_0055 PF02381 MraZ protein, putative antitoxin-like trd_0056 PF01795 MraW methylase family trd_0058 PF03717 Penicillin-binding Protein dimerisation domain trd_0058 PF00905 Penicillin binding protein transpeptidase domain trd_0058 PF03793 PASTA domain trd_0059 PF08245 Mur ligase middle domain trd_0059 PF02875 Mur ligase family, glutamate ligase domain trd_0059 PF01225 Mur ligase family, catalytic domain trd_0060 PF00953 Glycosyl transferase family 4 trd_0061 PF02875 Mur ligase family, glutamate ligase domain trd_0061 PF08245 Mur ligase middle domain trd_0062 PF01098 Cell cycle protein trd_0063 PF08245 Mur ligase middle domain trd_0063 PF02875 Mur ligase family, glutamate ligase domain trd_0063 PF01225 Mur ligase family, catalytic domain trd_0064 PF01565 FAD binding domain trd_0064 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain trd_0065 PF01820 D-ala D-ala ligase N-terminus trd_0065 PF07478 D-ala D-ala ligase C-terminus trd_0066 PF03799 Cell division protein FtsQ trd_0066 PF08478 POTRA domain, FtsQ-type trd_0068 PF00091 Tubulin/FtsZ family, GTPase domain trd_0068 PF12327 FtsZ family, C-terminal domain trd_0069 PF03477 ATP cone domain trd_0071 PF00085 Thioredoxin trd_0072 PF00294 pfkB family carbohydrate kinase trd_0074 PF07969 Amidohydrolase family trd_0075 PF01022 Bacterial regulatory protein, arsR family trd_0080 PF13520 Amino acid permease trd_0081 PF03741 Integral membrane protein TerC family trd_0082 PF00128 Alpha amylase, catalytic domain trd_0084 PF00271 Helicase conserved C-terminal domain trd_0084 PF00270 DEAD/DEAH box helicase trd_0084 PF17191 RecG wedge domain trd_0085 PF00258 Flavodoxin trd_0085 PF01613 Flavin reductase like domain trd_0087 PF00534 Glycosyl transferases group 1 trd_0087 PF13439 Glycosyltransferase Family 4 trd_0088 PF13439 Glycosyltransferase Family 4 trd_0088 PF00534 Glycosyl transferases group 1 trd_0089 PF00830 Ribosomal L28 family trd_0090 PF05175 Methyltransferase small domain trd_0090 PF17827 PrmC N-terminal domain trd_0091 PF03462 PCRF domain trd_0091 PF00472 RF-1 domain trd_0095 PF01842 ACT domain trd_0095 PF00800 Prephenate dehydratase trd_0095 PF01817 Chorismate mutase type II trd_0097 PF01467 Cytidylyltransferase-like trd_0100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain trd_0103 PF00117 Glutamine amidotransferase class-I trd_0104 PF02885 Glycosyl transferase family, helical bundle domain trd_0104 PF00591 Glycosyl transferase family, a/b domain trd_0105 PF00218 Indole-3-glycerol phosphate synthase trd_0106 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase trd_0107 PF00291 Pyridoxal-phosphate dependent enzyme trd_0108 PF00290 Tryptophan synthase alpha chain trd_0109 PF07736 Chorismate mutase type I trd_0110 PF00793 DAHP synthetase I family trd_0110 PF18152 DAHP synthase ferredoxin-like domain trd_0111 PF01782 RimM N-terminal domain trd_0111 PF05239 PRC-barrel domain trd_0112 PF01502 Phosphoribosyl-AMP cyclohydrolase trd_0112 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase trd_0114 PF00886 Ribosomal protein S16 trd_0115 PF01906 Putative heavy-metal-binding trd_0117 PF08442 ATP-grasp domain trd_0117 PF00549 CoA-ligase trd_0119 PF13416 Bacterial extracellular solute-binding protein trd_0120 PF01266 FAD dependent oxidoreductase trd_0121 PF00848 Ring hydroxylating alpha subunit (catalytic domain) trd_0121 PF00355 Rieske [2Fe-2S] domain trd_0123 PF01266 FAD dependent oxidoreductase trd_0125 PF13556 PucR C-terminal helix-turn-helix domain trd_0127 PF14659 Phage integrase, N-terminal SAM-like domain trd_0127 PF00589 Phage integrase family trd_0130 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term trd_0130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase trd_0131 PF17042 Nucleotide-binding C-terminal domain trd_0131 PF07005 Sugar-binding N-terminal domain trd_0132 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain trd_0132 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain trd_0133 PF02894 Oxidoreductase family, C-terminal alpha/beta domain trd_0133 PF01408 Oxidoreductase family, NAD-binding Rossmann fold trd_0136 PF00528 Binding-protein-dependent transport system inner membrane component trd_0137 PF00528 Binding-protein-dependent transport system inner membrane component trd_0140 PF00149 Calcineurin-like phosphoesterase trd_0141 PF00149 Calcineurin-like phosphoesterase trd_0142 PF03099 Biotin/lipoate A/B protein ligase family trd_0142 PF10437 Bacterial lipoate protein ligase C-terminus trd_0143 PF01597 Glycine cleavage H-protein trd_0144 PF01597 Glycine cleavage H-protein trd_0147 PF13183 4Fe-4S dicluster domain trd_0147 PF02754 Cysteine-rich domain trd_0148 PF00766 Electron transfer flavoprotein FAD-binding domain trd_0148 PF01012 Electron transfer flavoprotein domain trd_0149 PF01012 Electron transfer flavoprotein domain trd_0150 PF02754 Cysteine-rich domain trd_0150 PF13183 4Fe-4S dicluster domain trd_0150 PF02665 Nitrate reductase gamma subunit trd_0153 PF01593 Flavin containing amine oxidoreductase trd_0157 PF01597 Glycine cleavage H-protein trd_0159 PF13686 DsrE/DsrF/DrsH-like family trd_0160 PF01206 Sulfurtransferase TusA trd_0164 PF02347 Glycine cleavage system P-protein trd_0165 PF07136 Protein of unknown function (DUF1385) trd_0166 PF00206 Lyase trd_0166 PF14698 Argininosuccinate lyase C-terminal trd_0167 PF13673 Acetyltransferase (GNAT) domain trd_0168 PF04055 Radical SAM superfamily trd_0168 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family trd_0169 PF08148 DSHCT (NUC185) domain trd_0169 PF00271 Helicase conserved C-terminal domain trd_0169 PF00270 DEAD/DEAH box helicase trd_0170 PF03099 Biotin/lipoate A/B protein ligase family trd_0171 PF00534 Glycosyl transferases group 1 trd_0172 PF00586 AIR synthase related protein, N-terminal domain trd_0172 PF02769 AIR synthase related protein, C-terminal domain trd_0173 PF01425 Amidase trd_0174 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE trd_0175 PF00814 Glycoprotease family trd_0177 PF00814 Glycoprotease family trd_0178 PF00459 Inositol monophosphatase family trd_0179 PF00850 Histone deacetylase domain trd_0180 PF00117 Glutamine amidotransferase class-I trd_0181 PF00977 Histidine biosynthesis protein trd_0183 PF00977 Histidine biosynthesis protein trd_0184 PF00877 NlpC/P60 family trd_0187 PF00005 ABC transporter trd_0188 PF00154 recA bacterial DNA recombination protein trd_0189 PF06153 Cyclic-di-AMP receptor trd_0190 PF00005 ABC transporter trd_0194 PF00465 Iron-containing alcohol dehydrogenase trd_0195 PF01048 Phosphorylase superfamily trd_0196 PF02565 Recombination protein O C terminal trd_0196 PF11967 Recombination protein O N terminal trd_0197 PF01081 KDPG and KHG aldolase trd_0199 PF01513 ATP-NAD kinase trd_0200 PF06153 Cyclic-di-AMP receptor trd_0201 PF02223 Thymidylate kinase trd_0204 PF02132 RecR protein trd_0204 PF13662 Toprim domain trd_0205 PF01580 FtsK/SpoIIIE family trd_0205 PF17854 FtsK alpha domain trd_0205 PF09397 Ftsk gamma domain trd_0206 PF03167 Uracil DNA glycosylase superfamily trd_0207 PF02151 UvrB/uvrC motif trd_0207 PF01541 GIY-YIG catalytic domain trd_0207 PF08459 UvrC Helix-hairpin-helix N-terminal trd_0209 PF00156 Phosphoribosyl transferase domain trd_0210 PF00533 BRCA1 C Terminus (BRCT) domain trd_0210 PF03119 NAD-dependent DNA ligase C4 zinc finger domain trd_0210 PF03120 NAD-dependent DNA ligase OB-fold domain trd_0210 PF12826 Helix-hairpin-helix motif trd_0210 PF01653 NAD-dependent DNA ligase adenylation domain trd_0211 PF01699 Sodium/calcium exchanger protein trd_0212 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain trd_0212 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain trd_0212 PF02142 MGS-like domain trd_0213 PF00117 Glutamine amidotransferase class-I trd_0213 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain trd_0214 PF01979 Amidohydrolase family trd_0215 PF02545 Maf-like protein trd_0216 PF01938 TRAM domain trd_0216 PF05958 tRNA (Uracil-5-)-methyltransferase trd_0217 PF02675 S-adenosylmethionine decarboxylase trd_0218 PF17284 Spermidine synthase tetramerisation domain trd_0220 PF00529 HlyD membrane-fusion protein of T1SS trd_0220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion trd_0223 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_0224 PF02687 FtsX-like permease family trd_0224 PF12704 MacB-like periplasmic core domain trd_0224 PF00005 ABC transporter trd_0225 PF04226 Transglycosylase associated protein trd_0226 PF01746 tRNA (Guanine-1)-methyltransferase trd_0227 PF00072 Response regulator receiver domain trd_0229 PF16363 GDP-mannose 4,6 dehydratase trd_0232 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_0234 PF01264 Chorismate synthase trd_0236 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase trd_0237 PF05958 tRNA (Uracil-5-)-methyltransferase trd_0237 PF01938 TRAM domain trd_0238 PF01668 SmpB protein trd_0242 PF01878 EVE domain trd_0246 PF00248 Aldo/keto reductase family trd_0249 PF00528 Binding-protein-dependent transport system inner membrane component trd_0250 PF00528 Binding-protein-dependent transport system inner membrane component trd_0252 PF09339 IclR helix-turn-helix domain trd_0252 PF01614 Bacterial transcriptional regulator trd_0260 PF01565 FAD binding domain trd_0260 PF02913 FAD linked oxidases, C-terminal domain trd_0262 PF13183 4Fe-4S dicluster domain trd_0262 PF02754 Cysteine-rich domain trd_0264 PF00326 Prolyl oligopeptidase family trd_0264 PF07676 WD40-like Beta Propeller Repeat trd_0267 PF12282 Signal transduction histidine kinase trd_0267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_0267 PF07568 Histidine kinase trd_0269 PF05343 M42 glutamyl aminopeptidase trd_0272 PF00005 ABC transporter trd_0281 PF01546 Peptidase family M20/M25/M40 trd_0281 PF07687 Peptidase dimerisation domain trd_0283 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain trd_0283 PF00753 Metallo-beta-lactamase superfamily trd_0283 PF10996 Beta-Casp domain trd_0284 PF00684 DnaJ central domain trd_0284 PF00226 DnaJ domain trd_0284 PF01556 DnaJ C terminal domain trd_0285 PF00378 Enoyl-CoA hydratase/isomerase trd_0293 PF00004 ATPase family associated with various cellular activities (AAA) trd_0293 PF01434 Peptidase family M41 trd_0293 PF17862 AAA+ lid domain trd_0295 PF00156 Phosphoribosyl transferase domain trd_0295 PF11734 TilS substrate C-terminal domain trd_0295 PF01171 PP-loop family trd_0302 PF01144 Coenzyme A transferase trd_0303 PF01144 Coenzyme A transferase trd_0305 PF13361 UvrD-like helicase C-terminal domain trd_0305 PF00580 UvrD/REP helicase N-terminal domain trd_0306 PF00391 PEP-utilising enzyme, mobile domain trd_0306 PF02896 PEP-utilising enzyme, TIM barrel domain trd_0306 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain trd_0307 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily trd_0308 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain trd_0308 PF02777 Iron/manganese superoxide dismutases, C-terminal domain trd_0309 PF01425 Amidase trd_0314 PF04055 Radical SAM superfamily trd_0315 PF01969 Protein of unknown function DUF111 trd_0316 PF02535 ZIP Zinc transporter trd_0317 PF00005 ABC transporter trd_0318 PF00528 Binding-protein-dependent transport system inner membrane component trd_0322 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily trd_0323 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal trd_0323 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal trd_0324 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal trd_0324 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal trd_0330 PF13085 2Fe-2S iron-sulfur cluster binding domain trd_0331 PF00890 FAD binding domain trd_0331 PF02910 Fumarate reductase flavoprotein C-term trd_0333 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit trd_0335 PF04851 Type III restriction enzyme, res subunit trd_0335 PF13307 Helicase C-terminal domain trd_0335 PF00929 Exonuclease trd_0336 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded trd_0337 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain trd_0337 PF07498 Rho termination factor, N-terminal domain trd_0337 PF07497 Rho termination factor, RNA-binding domain trd_0339 PF00561 alpha/beta hydrolase fold trd_0341 PF04452 RNA methyltransferase trd_0344 PF12804 MobA-like NTP transferase domain trd_0344 PF00132 Bacterial transferase hexapeptide (six repeats) trd_0347 PF02441 Flavoprotein trd_0347 PF04127 DNA / pantothenate metabolism flavoprotein trd_0351 PF00781 Diacylglycerol kinase catalytic domain trd_0351 PF02142 MGS-like domain trd_0352 PF13464 Domain of unknown function (DUF4115) trd_0354 PF00919 Uncharacterized protein family UPF0004 trd_0354 PF01938 TRAM domain trd_0354 PF04055 Radical SAM superfamily trd_0359 PF12804 MobA-like NTP transferase domain trd_0362 PF01522 Polysaccharide deacetylase trd_0363 PF00205 Thiamine pyrophosphate enzyme, central domain trd_0363 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_0363 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_0365 PF00682 HMGL-like trd_0365 PF08502 LeuA allosteric (dimerisation) domain trd_0366 PF01118 Semialdehyde dehydrogenase, NAD binding domain trd_0366 PF02774 Semialdehyde dehydrogenase, dimerisation domain trd_0367 PF01842 ACT domain trd_0367 PF00742 Homoserine dehydrogenase trd_0367 PF03447 Homoserine dehydrogenase, NAD binding domain trd_0368 PF00561 alpha/beta hydrolase fold trd_0370 PF03176 MMPL family trd_0371 PF00982 Glycosyltransferase family 20 trd_0374 PF01522 Polysaccharide deacetylase trd_0376 PF01883 Iron-sulfur cluster assembly protein trd_0377 PF01592 NifU-like N terminal domain trd_0378 PF00266 Aminotransferase class-V trd_0379 PF01458 Uncharacterized protein family (UPF0051) trd_0380 PF01458 Uncharacterized protein family (UPF0051) trd_0381 PF00005 ABC transporter trd_0382 PF01475 Ferric uptake regulator family trd_0385 PF00929 Exonuclease trd_0387 PF07969 Amidohydrolase family trd_0388 PF07969 Amidohydrolase family trd_0391 PF00266 Aminotransferase class-V trd_0392 PF01053 Cys/Met metabolism PLP-dependent enzyme trd_0394 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_0395 PF00528 Binding-protein-dependent transport system inner membrane component trd_0396 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_0396 PF00528 Binding-protein-dependent transport system inner membrane component trd_0398 PF08543 Phosphomethylpyrimidine kinase trd_0399 PF05690 Thiazole biosynthesis protein ThiG trd_0400 PF02581 Thiamine monophosphate synthase trd_0401 PF02581 Thiamine monophosphate synthase trd_0401 PF17792 ThiD2 family trd_0402 PF02597 ThiS family trd_0403 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain trd_0403 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain trd_0404 PF00892 EamA-like transporter family trd_0405 PF01043 SecA preprotein cross-linking domain trd_0405 PF07516 SecA Wing and Scaffold domain trd_0405 PF02810 SEC-C motif trd_0405 PF07517 SecA DEAD-like domain trd_0406 PF00230 Major intrinsic protein trd_0409 PF02630 SCO1/SenC trd_0412 PF00296 Luciferase-like monooxygenase trd_0413 PF01113 Dihydrodipicolinate reductase, N-terminus trd_0413 PF05173 Dihydrodipicolinate reductase, C-terminus trd_0414 PF00701 Dihydrodipicolinate synthetase family trd_0418 PF13439 Glycosyltransferase Family 4 trd_0418 PF00534 Glycosyl transferases group 1 trd_0421 PF01807 CHC2 zinc finger trd_0421 PF08275 DNA primase catalytic core, N-terminal domain trd_0421 PF10410 DnaB-helicase binding domain of primase trd_0422 PF12390 Selenocysteine synthase N terminal trd_0422 PF03841 L-seryl-tRNA selenium transferase trd_0423 PF01966 HD domain trd_0423 PF13286 Phosphohydrolase-associated domain trd_0424 PF01571 Aminomethyltransferase folate-binding domain trd_0427 PF01541 GIY-YIG catalytic domain trd_0427 PF08459 UvrC Helix-hairpin-helix N-terminal trd_0427 PF02151 UvrB/uvrC motif trd_0428 PF01300 Telomere recombination trd_0432 PF00004 ATPase family associated with various cellular activities (AAA) trd_0432 PF12002 MgsA AAA+ ATPase C terminal trd_0432 PF16193 AAA C-terminal domain trd_0433 PF01138 3' exoribonuclease family, domain 1 trd_0433 PF03725 3' exoribonuclease family, domain 2 trd_0434 PF00475 Imidazoleglycerol-phosphate dehydratase trd_0435 PF00155 Aminotransferase class I and II trd_0436 PF07943 Penicillin-binding protein 5, C-terminal domain trd_0436 PF00768 D-alanyl-D-alanine carboxypeptidase trd_0437 PF01479 S4 domain trd_0437 PF00849 RNA pseudouridylate synthase trd_0438 PF02224 Cytidylate kinase trd_0441 PF00768 D-alanyl-D-alanine carboxypeptidase trd_0441 PF07943 Penicillin-binding protein 5, C-terminal domain trd_0442 PF13411 MerR HTH family regulatory protein trd_0443 PF10431 C-terminal, D2-small domain, of ClpB protein trd_0443 PF02861 Clp amino terminal domain, pathogenicity island component trd_0443 PF00004 ATPase family associated with various cellular activities (AAA) trd_0443 PF07724 AAA domain (Cdc48 subfamily) trd_0443 PF17871 AAA lid domain trd_0447 PF01717 Cobalamin-independent synthase, Catalytic domain trd_0448 PF00107 Zinc-binding dehydrogenase trd_0448 PF08240 Alcohol dehydrogenase GroES-like domain trd_0449 PF00793 DAHP synthetase I family trd_0449 PF18152 DAHP synthase ferredoxin-like domain trd_0452 PF13439 Glycosyltransferase Family 4 trd_0455 PF03328 HpcH/HpaI aldolase/citrate lyase family trd_0457 PF02629 CoA binding domain trd_0457 PF06971 Putative DNA-binding protein N-terminus trd_0459 PF00795 Carbon-nitrogen hydrolase trd_0459 PF02540 NAD synthase trd_0460 PF02463 RecF/RecN/SMC N terminal domain trd_0461 PF02575 YbaB/EbfC DNA-binding family trd_0462 PF00296 Luciferase-like monooxygenase trd_0468 PF00037 4Fe-4S binding domain trd_0468 PF13247 4Fe-4S dicluster domain trd_0469 PF00384 Molybdopterin oxidoreductase trd_0469 PF01568 Molydopterin dinucleotide binding domain trd_0476 PF00456 Transketolase, thiamine diphosphate binding domain trd_0477 PF02779 Transketolase, pyrimidine binding domain trd_0477 PF02780 Transketolase, C-terminal domain trd_0478 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) trd_0480 PF05257 CHAP domain trd_0480 PF01476 LysM domain trd_0482 PF01262 Alanine dehydrogenase/PNT, C-terminal domain trd_0482 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch trd_0482 PF05222 Alanine dehydrogenase/PNT, N-terminal domain trd_0483 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch trd_0484 PF02233 NAD(P) transhydrogenase beta subunit trd_0487 PF03572 Peptidase family S41 trd_0487 PF00595 PDZ domain trd_0489 PF02585 GlcNAc-PI de-N-acetylase trd_0491 PF02673 Bacitracin resistance protein BacA trd_0492 PF07690 Major Facilitator Superfamily trd_0493 PF01588 Putative tRNA binding domain trd_0494 PF00293 NUDIX domain trd_0497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family trd_0497 PF03466 LysR substrate binding domain trd_0502 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region trd_0502 PF01872 RibD C-terminal domain trd_0503 PF00677 Lumazine binding domain trd_0504 PF00925 GTP cyclohydrolase II trd_0504 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase trd_0505 PF00885 6,7-dimethyl-8-ribityllumazine synthase trd_0506 PF00768 D-alanyl-D-alanine carboxypeptidase trd_0506 PF07943 Penicillin-binding protein 5, C-terminal domain trd_0507 PF02585 GlcNAc-PI de-N-acetylase trd_0508 PF09107 Elongation factor SelB, winged helix trd_0508 PF00009 Elongation factor Tu GTP binding domain trd_0508 PF03144 Elongation factor Tu domain 2 trd_0508 PF09105 Elongation factor SelB, winged helix trd_0508 PF09106 Elongation factor SelB, winged helix trd_0509 PF03190 Protein of unknown function, DUF255 trd_0513 PF02789 Cytosol aminopeptidase family, N-terminal domain trd_0513 PF00883 Cytosol aminopeptidase family, catalytic domain trd_0515 PF01381 Helix-turn-helix trd_0516 PF01209 ubiE/COQ5 methyltransferase family trd_0520 PF13416 Bacterial extracellular solute-binding protein trd_0521 PF00528 Binding-protein-dependent transport system inner membrane component trd_0522 PF00528 Binding-protein-dependent transport system inner membrane component trd_0523 PF00005 ABC transporter trd_0523 PF08402 TOBE domain trd_0524 PF02875 Mur ligase family, glutamate ligase domain trd_0524 PF08245 Mur ligase middle domain trd_0526 PF01883 Iron-sulfur cluster assembly protein trd_0526 PF10609 NUBPL iron-transfer P-loop NTPase trd_0527 PF02801 Beta-ketoacyl synthase, C-terminal domain trd_0527 PF00109 Beta-ketoacyl synthase, N-terminal domain trd_0528 PF00491 Arginase family trd_0529 PF00491 Arginase family trd_0530 PF09347 Domain of unknown function (DUF1989) trd_0531 PF01979 Amidohydrolase family trd_0531 PF00449 Urease alpha-subunit, N-terminal domain trd_0532 PF00547 Urease, gamma subunit trd_0532 PF00699 Urease beta subunit trd_0533 PF00699 Urease beta subunit trd_0533 PF00547 Urease, gamma subunit trd_0537 PF01165 Ribosomal protein S21 trd_0539 PF03070 TENA/THI-4/PQQC family trd_0540 PF03070 TENA/THI-4/PQQC family trd_0542 PF00483 Nucleotidyl transferase trd_0543 PF00750 tRNA synthetases class I (R) trd_0543 PF03485 Arginyl tRNA synthetase N terminal domain trd_0543 PF05746 DALR anticodon binding domain trd_0544 PF03816 Cell envelope-related transcriptional attenuator domain trd_0546 PF00692 dUTPase trd_0547 PF01923 Cobalamin adenosyltransferase trd_0548 PF01061 ABC-2 type transporter trd_0553 PF02899 Phage integrase, N-terminal SAM-like domain trd_0553 PF00589 Phage integrase family trd_0554 PF00005 ABC transporter trd_0554 PF13732 Domain of unknown function (DUF4162) trd_0557 PF09125 Cytochrome C oxidase subunit II, transmembrane trd_0557 PF00116 Cytochrome C oxidase subunit II, periplasmic domain trd_0558 PF00115 Cytochrome C and Quinol oxidase polypeptide I trd_0559 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_0559 PF00205 Thiamine pyrophosphate enzyme, central domain trd_0559 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_0560 PF00561 alpha/beta hydrolase fold trd_0561 PF02817 e3 binding domain trd_0561 PF00364 Biotin-requiring enzyme trd_0561 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) trd_0562 PF02779 Transketolase, pyrimidine binding domain trd_0562 PF16870 2-oxoglutarate dehydrogenase C-terminal trd_0562 PF16078 2-oxoglutarate dehydrogenase N-terminus trd_0562 PF00676 Dehydrogenase E1 component trd_0564 PF03448 MgtE intracellular N domain trd_0564 PF01769 Divalent cation transporter trd_0564 PF00571 CBS domain trd_0566 PF07690 Major Facilitator Superfamily trd_0567 PF14791 DNA polymerase beta thumb trd_0567 PF02811 PHP domain trd_0567 PF14716 Helix-hairpin-helix domain trd_0571 PF00696 Amino acid kinase family trd_0572 PF06545 Protein of unknown function (DUF1116) trd_0573 PF02629 CoA binding domain trd_0573 PF00549 CoA-ligase trd_0577 PF03450 CO dehydrogenase flavoprotein C-terminal domain trd_0577 PF00941 FAD binding domain in molybdopterin dehydrogenase trd_0578 PF00111 2Fe-2S iron-sulfur cluster binding domain trd_0578 PF01799 [2Fe-2S] binding domain trd_0579 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_0579 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_0580 PF04199 Putative cyclase trd_0582 PF08240 Alcohol dehydrogenase GroES-like domain trd_0583 PF00690 Cation transporter/ATPase, N-terminus trd_0583 PF00689 Cation transporting ATPase, C-terminus trd_0595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain trd_0595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain trd_0596 PF02445 Quinolinate synthetase A protein trd_0597 PF09084 NMT1/THI5 like trd_0598 PF00528 Binding-protein-dependent transport system inner membrane component trd_0599 PF00005 ABC transporter trd_0603 PF12706 Beta-lactamase superfamily domain trd_0606 PF02769 AIR synthase related protein, C-terminal domain trd_0606 PF00586 AIR synthase related protein, N-terminal domain trd_0608 PF00365 Phosphofructokinase trd_0609 PF03129 Anticodon binding domain trd_0609 PF09180 Prolyl-tRNA synthetase, C-terminal trd_0609 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) trd_0613 PF00834 Ribulose-phosphate 3 epimerase family trd_0615 PF00498 FHA domain trd_0618 PF02594 Uncharacterised ACR, YggU family COG1872 trd_0619 PF00535 Glycosyl transferase family 2 trd_0620 PF02540 NAD synthase trd_0623 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain trd_0623 PF03725 3' exoribonuclease family, domain 2 trd_0623 PF00013 KH domain trd_0623 PF01138 3' exoribonuclease family, domain 1 trd_0623 PF00575 S1 RNA binding domain trd_0624 PF00312 Ribosomal protein S15 trd_0625 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain trd_0625 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain trd_0626 PF10369 Small subunit of acetolactate synthase trd_0627 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_0627 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_0627 PF00205 Thiamine pyrophosphate enzyme, central domain trd_0632 PF00486 Transcriptional regulatory protein, C terminal trd_0632 PF00072 Response regulator receiver domain trd_0636 PF01330 RuvA N terminal domain trd_0636 PF07499 RuvA, C-terminal domain trd_0637 PF00815 Histidinol dehydrogenase trd_0638 PF01634 ATP phosphoribosyltransferase trd_0639 PF03129 Anticodon binding domain trd_0639 PF13393 Histidyl-tRNA synthetase trd_0640 PF03484 tRNA synthetase B5 domain trd_0640 PF03147 Ferredoxin-fold anticodon binding domain trd_0640 PF01588 Putative tRNA binding domain trd_0640 PF03483 B3/4 domain trd_0640 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain trd_0641 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain trd_0641 PF01409 tRNA synthetases class II core domain (F) trd_0642 PF00113 Enolase, C-terminal TIM barrel domain trd_0642 PF03952 Enolase, N-terminal domain trd_0643 PF01676 Metalloenzyme superfamily trd_0643 PF06415 BPG-independent PGAM N-terminus (iPGM_N) trd_0644 PF00920 Dehydratase family trd_0645 PF02222 ATP-grasp domain trd_0645 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain trd_0646 PF00731 AIR carboxylase trd_0647 PF00180 Isocitrate/isopropylmalate dehydrogenase trd_0647 PF18324 Hypothetical protein TT1725 trd_0649 PF02355 Protein export membrane protein trd_0649 PF07549 SecD/SecF GG Motif trd_0650 PF02355 Protein export membrane protein trd_0651 PF01467 Cytidylyltransferase-like trd_0652 PF03989 DNA gyrase C-terminal domain, beta-propeller trd_0652 PF00521 DNA gyrase/topoisomerase IV, subunit A trd_0655 PF01658 Myo-inositol-1-phosphate synthase trd_0658 PF13439 Glycosyltransferase Family 4 trd_0658 PF00534 Glycosyl transferases group 1 trd_0659 PF01075 Glycosyltransferase family 9 (heptosyltransferase) trd_0660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) trd_0661 PF07977 FabA-like domain trd_0662 PF00709 Adenylosuccinate synthetase trd_0663 PF00226 DnaJ domain trd_0663 PF01556 DnaJ C terminal domain trd_0663 PF00684 DnaJ central domain trd_0666 PF00717 Peptidase S24-like trd_0666 PF01726 LexA DNA binding domain trd_0668 PF01713 Smr domain trd_0668 PF00488 MutS domain V trd_0670 PF02559 CarD-like/TRCF domain trd_0670 PF00270 DEAD/DEAH box helicase trd_0670 PF00271 Helicase conserved C-terminal domain trd_0670 PF17757 UvrB interaction domain trd_0670 PF03461 TRCF domain trd_0671 PF10531 SLBB domain trd_0676 PF03144 Elongation factor Tu domain 2 trd_0676 PF00009 Elongation factor Tu GTP binding domain trd_0676 PF03143 Elongation factor Tu C-terminal domain trd_0677 PF00471 Ribosomal protein L33 trd_0680 PF00467 KOW motif trd_0680 PF02357 Transcription termination factor nusG trd_0681 PF00298 Ribosomal protein L11, RNA binding domain trd_0681 PF03946 Ribosomal protein L11, N-terminal domain trd_0682 PF00687 Ribosomal protein L1p/L10e family trd_0683 PF00466 Ribosomal protein L10 trd_0684 PF00542 Ribosomal protein L7/L12 C-terminal domain trd_0684 PF16320 Ribosomal protein L7/L12 dimerisation domain trd_0686 PF03861 ANTAR domain trd_0686 PF00072 Response regulator receiver domain trd_0688 PF02457 DisA bacterial checkpoint controller nucleotide-binding trd_0690 PF01695 IstB-like ATP binding protein trd_0692 PF00772 DnaB-like helicase N terminal domain trd_0692 PF03796 DnaB-like helicase C terminal domain trd_0693 PF03948 Ribosomal protein L9, C-terminal domain trd_0693 PF01281 Ribosomal protein L9, N-terminal domain trd_0696 PF08032 RNA 2'-O ribose methyltransferase substrate binding trd_0696 PF00588 SpoU rRNA Methylase family trd_0697 PF09190 DALR domain trd_0697 PF01406 tRNA synthetases class I (C) catalytic domain trd_0699 PF09723 Zinc ribbon domain trd_0700 PF01367 5'-3' exonuclease, C-terminal SAM fold trd_0700 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain trd_0700 PF00476 DNA polymerase family A trd_0700 PF01612 3'-5' exonuclease trd_0701 PF17863 AAA lid domain trd_0701 PF07726 ATPase family associated with various cellular activities (AAA) trd_0703 PF11992 Domain of unknown function (DUF3488) trd_0703 PF01841 Transglutaminase-like superfamily trd_0703 PF13559 Domain of unknown function (DUF4129) trd_0704 PF00294 pfkB family carbohydrate kinase trd_0705 PF03030 Inorganic H+ pyrophosphatase trd_0707 PF00510 Cytochrome c oxidase subunit III trd_0708 PF00115 Cytochrome C and Quinol oxidase polypeptide I trd_0711 PF16177 Acetyl-coenzyme A synthetase N-terminus trd_0711 PF13193 AMP-binding enzyme C-terminal domain trd_0711 PF00501 AMP-binding enzyme trd_0712 PF02803 Thiolase, C-terminal domain trd_0712 PF00108 Thiolase, N-terminal domain trd_0713 PF02463 RecF/RecN/SMC N terminal domain trd_0714 PF00712 DNA polymerase III beta subunit, N-terminal domain trd_0714 PF02767 DNA polymerase III beta subunit, central domain trd_0714 PF02768 DNA polymerase III beta subunit, C-terminal domain trd_0716 PF02547 Queuosine biosynthesis protein trd_0717 PF00266 Aminotransferase class-V trd_0718 PF05496 Holliday junction DNA helicase RuvB P-loop domain trd_0718 PF05491 RuvB C-terminal winged helix domain trd_0718 PF17864 RuvB AAA lid domain trd_0719 PF03966 Trm112p-like protein trd_0723 PF02254 TrkA-N domain trd_0723 PF00999 Sodium/hydrogen exchanger family trd_0723 PF02080 TrkA-C domain trd_0726 PF02272 DHHA1 domain trd_0726 PF01411 tRNA synthetases class II (A) trd_0726 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain trd_0729 PF03652 Holliday junction resolvase trd_0731 PF06153 Cyclic-di-AMP receptor trd_0733 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain trd_0733 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain trd_0738 PF02811 PHP domain trd_0738 PF14579 Helix-hairpin-helix motif trd_0738 PF07733 Bacterial DNA polymerase III alpha NTPase domain trd_0738 PF17657 Bacterial DNA polymerase III alpha subunit finger domain trd_0739 PF08443 RimK-like ATP-grasp domain trd_0739 PF08245 Mur ligase middle domain trd_0739 PF02875 Mur ligase family, glutamate ligase domain trd_0741 PF01725 Ham1 family trd_0742 PF01026 TatD related DNase trd_0743 PF01380 SIS domain trd_0745 PF00206 Lyase trd_0745 PF10397 Adenylosuccinate lyase C-terminus trd_0746 PF01259 SAICAR synthetase trd_0747 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase trd_0749 PF02769 AIR synthase related protein, C-terminal domain trd_0749 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain trd_0749 PF00586 AIR synthase related protein, N-terminal domain trd_0750 PF00156 Phosphoribosyl transferase domain trd_0750 PF13537 Glutamine amidotransferase domain trd_0751 PF08669 Glycine cleavage T-protein C-terminal barrel domain trd_0751 PF01571 Aminomethyltransferase folate-binding domain trd_0752 PF01597 Glycine cleavage H-protein trd_0753 PF02347 Glycine cleavage system P-protein trd_0754 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal trd_0754 PF01926 50S ribosome-binding GTPase trd_0755 PF00464 Serine hydroxymethyltransferase trd_0756 PF00953 Glycosyl transferase family 4 trd_0757 PF03109 ABC1 family trd_0760 PF01435 Peptidase family M48 trd_0767 PF00107 Zinc-binding dehydrogenase trd_0767 PF08240 Alcohol dehydrogenase GroES-like domain trd_0768 PF01479 S4 domain trd_0768 PF00579 tRNA synthetases class I (W and Y) trd_0769 PF06574 FAD synthetase trd_0769 PF01687 Riboflavin kinase trd_0770 PF16198 tRNA pseudouridylate synthase B C-terminal domain trd_0770 PF01509 TruB family pseudouridylate synthase (N terminal domain) trd_0772 PF02033 Ribosome-binding factor A trd_0773 PF04760 Translation initiation factor IF-2, N-terminal region trd_0773 PF11987 Translation-initiation factor 2 trd_0773 PF00009 Elongation factor Tu GTP binding domain trd_0774 PF04296 Protein of unknown function (DUF448) trd_0775 PF08529 NusA N-terminal domain trd_0775 PF00575 S1 RNA binding domain trd_0775 PF13184 NusA-like KH domain trd_0777 PF01933 Uncharacterised protein family UPF0052 trd_0778 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain trd_0778 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain trd_0779 PF00162 Phosphoglycerate kinase trd_0780 PF00121 Triosephosphate isomerase trd_0782 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_0783 PF02416 mttA/Hcf106 family trd_0788 PF10502 Signal peptidase, peptidase S26 trd_0793 PF00037 4Fe-4S binding domain trd_0793 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit trd_0793 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region trd_0794 PF02423 Ornithine cyclodeaminase/mu-crystallin family trd_0796 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain trd_0796 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain trd_0797 PF02801 Beta-ketoacyl synthase, C-terminal domain trd_0797 PF00109 Beta-ketoacyl synthase, N-terminal domain trd_0799 PF04545 Sigma-70, region 4 trd_0799 PF04539 Sigma-70 region 3 trd_0799 PF04542 Sigma-70 region 2 trd_0799 PF03979 Sigma-70 factor, region 1.1 trd_0799 PF00140 Sigma-70 factor, region 1.2 trd_0801 PF02075 Crossover junction endodeoxyribonuclease RuvC trd_0802 PF01479 S4 domain trd_0802 PF01728 FtsJ-like methyltransferase trd_0804 PF02310 B12 binding domain trd_0804 PF01642 Methylmalonyl-CoA mutase trd_0807 PF01195 Peptidyl-tRNA hydrolase trd_0808 PF00534 Glycosyl transferases group 1 trd_0808 PF13439 Glycosyltransferase Family 4 trd_0809 PF02416 mttA/Hcf106 family trd_0811 PF01702 Queuine tRNA-ribosyltransferase trd_0812 PF00708 Acylphosphatase trd_0813 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain trd_0813 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain trd_0813 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain trd_0814 PF01648 4'-phosphopantetheinyl transferase superfamily trd_0815 PF03853 YjeF-related protein N-terminus trd_0815 PF01256 Carbohydrate kinase trd_0816 PF00571 CBS domain trd_0816 PF00478 IMP dehydrogenase / GMP reductase domain trd_0818 PF12706 Beta-lactamase superfamily domain trd_0819 PF01168 Alanine racemase, N-terminal domain trd_0821 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_0821 PF00205 Thiamine pyrophosphate enzyme, central domain trd_0821 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_0823 PF04493 Endonuclease V trd_0824 PF00551 Formyl transferase trd_0824 PF02911 Formyl transferase, C-terminal domain trd_0827 PF00707 Translation initiation factor IF-3, C-terminal domain trd_0827 PF05198 Translation initiation factor IF-3, N-terminal domain trd_0828 PF01632 Ribosomal protein L35 trd_0829 PF00453 Ribosomal protein L20 trd_0830 PF08032 RNA 2'-O ribose methyltransferase substrate binding trd_0830 PF00588 SpoU rRNA Methylase family trd_0831 PF00216 Bacterial DNA-binding protein trd_0832 PF01751 Toprim domain trd_0832 PF00986 DNA gyrase B subunit, carboxyl terminus trd_0832 PF00204 DNA gyrase B trd_0832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_0835 PF00905 Penicillin binding protein transpeptidase domain trd_0836 PF01098 Cell cycle protein trd_0837 PF01048 Phosphorylase superfamily trd_0840 PF01370 NAD dependent epimerase/dehydratase family trd_0848 PF01649 Ribosomal protein S20 trd_0850 PF03023 Lipid II flippase MurJ trd_0851 PF03144 Elongation factor Tu domain 2 trd_0851 PF06421 GTP-binding protein LepA C-terminus trd_0851 PF00679 Elongation factor G C-terminus trd_0851 PF00009 Elongation factor Tu GTP binding domain trd_0852 PF03819 MazG nucleotide pyrophosphohydrolase domain trd_0852 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases trd_0853 PF02938 GAD domain trd_0853 PF00152 tRNA synthetases class II (D, K and N) trd_0853 PF01336 OB-fold nucleic acid binding domain trd_0854 PF05067 Manganese containing catalase trd_0861 PF13167 GTP-binding GTPase N-terminal trd_0861 PF16360 GTP-binding GTPase Middle Region trd_0861 PF01926 50S ribosome-binding GTPase trd_0863 PF00586 AIR synthase related protein, N-terminal domain trd_0863 PF02769 AIR synthase related protein, C-terminal domain trd_0864 PF00025 ADP-ribosylation factor family trd_0865 PF02541 Ppx/GppA phosphatase family trd_0867 PF02142 MGS-like domain trd_0867 PF01808 AICARFT/IMPCHase bienzyme trd_0870 PF04294 VanW like protein trd_0871 PF01042 Endoribonuclease L-PSP trd_0873 PF03449 Transcription elongation factor, N-terminal trd_0873 PF01272 Transcription elongation factor, GreA/GreB, C-term trd_0874 PF01336 OB-fold nucleic acid binding domain trd_0874 PF00152 tRNA synthetases class II (D, K and N) trd_0875 PF00528 Binding-protein-dependent transport system inner membrane component trd_0876 PF00528 Binding-protein-dependent transport system inner membrane component trd_0879 PF01546 Peptidase family M20/M25/M40 trd_0881 PF00005 ABC transporter trd_0881 PF08402 TOBE domain trd_0882 PF01039 Carboxyl transferase domain trd_0882 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit trd_0882 PF17848 Acetyl-coA carboxylase zinc finger domain trd_0887 PF01266 FAD dependent oxidoreductase trd_0888 PF00571 CBS domain trd_0889 PF01571 Aminomethyltransferase folate-binding domain trd_0889 PF08669 Glycine cleavage T-protein C-terminal barrel domain trd_0889 PF16350 FAD dependent oxidoreductase central domain trd_0889 PF01266 FAD dependent oxidoreductase trd_0894 PF00205 Thiamine pyrophosphate enzyme, central domain trd_0894 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_0899 PF02219 Methylenetetrahydrofolate reductase trd_0900 PF01268 Formate--tetrahydrofolate ligase trd_0901 PF01571 Aminomethyltransferase folate-binding domain trd_0904 PF02585 GlcNAc-PI de-N-acetylase trd_0906 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily trd_0907 PF09587 Bacterial capsule synthesis protein PGA_cap trd_0911 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_0911 PF13378 Enolase C-terminal domain-like trd_0912 PF03786 D-mannonate dehydratase (UxuA) trd_0914 PF04362 Bacterial Fe(2+) trafficking trd_0916 PF16363 GDP-mannose 4,6 dehydratase trd_0917 PF02772 S-adenosylmethionine synthetase, central domain trd_0917 PF00438 S-adenosylmethionine synthetase, N-terminal domain trd_0917 PF02773 S-adenosylmethionine synthetase, C-terminal domain trd_0918 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain trd_0918 PF05221 S-adenosyl-L-homocysteine hydrolase trd_0919 PF01008 Initiation factor 2 subunit family trd_0920 PF01761 3-dehydroquinate synthase trd_0921 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain trd_0921 PF00056 lactate/malate dehydrogenase, NAD binding domain trd_0923 PF03453 MoeA N-terminal region (domain I and II) trd_0923 PF00994 Probable molybdopterin binding domain trd_0923 PF03454 MoeA C-terminal region (domain IV) trd_0924 PF00480 ROK family trd_0930 PF08245 Mur ligase middle domain trd_0930 PF01225 Mur ligase family, catalytic domain trd_0930 PF02875 Mur ligase family, glutamate ligase domain trd_0940 PF00149 Calcineurin-like phosphoesterase trd_0943 PF01258 Prokaryotic dksA/traR C4-type zinc finger trd_0944 PF00534 Glycosyl transferases group 1 trd_0945 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family trd_0945 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain trd_0949 PF00317 Ribonucleotide reductase, all-alpha domain trd_0949 PF02867 Ribonucleotide reductase, barrel domain trd_0949 PF03477 ATP cone domain trd_0950 PF12706 Beta-lactamase superfamily domain trd_0951 PF03576 Peptidase family S58 trd_0952 PF01261 Xylose isomerase-like TIM barrel trd_0953 PF00380 Ribosomal protein S9/S16 trd_0954 PF00572 Ribosomal protein L13 trd_0955 PF01416 tRNA pseudouridine synthase trd_0956 PF01196 Ribosomal protein L17 trd_0957 PF01000 RNA polymerase Rpb3/RpoA insert domain trd_0957 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain trd_0957 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain trd_0958 PF00163 Ribosomal protein S4/S9 N-terminal domain trd_0958 PF01479 S4 domain trd_0959 PF00411 Ribosomal protein S11 trd_0960 PF00416 Ribosomal protein S13/S18 trd_0961 PF00444 Ribosomal protein L36 trd_0962 PF01176 Translation initiation factor 1A / IF-1 trd_0963 PF00557 Metallopeptidase family M24 trd_0964 PF05191 Adenylate kinase, active site lid trd_0965 PF00344 SecY translocase trd_0966 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A trd_0967 PF00327 Ribosomal protein L30p/L7e trd_0968 PF03719 Ribosomal protein S5, C-terminal domain trd_0968 PF00333 Ribosomal protein S5, N-terminal domain trd_0969 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast trd_0970 PF00347 Ribosomal protein L6 trd_0971 PF00410 Ribosomal protein S8 trd_0972 PF00281 Ribosomal protein L5 trd_0972 PF00673 ribosomal L5P family C-terminus trd_0973 PF00467 KOW motif trd_0973 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 trd_0974 PF00238 Ribosomal protein L14p/L23e trd_0975 PF00366 Ribosomal protein S17 trd_0976 PF00831 Ribosomal L29 protein trd_0977 PF00252 Ribosomal protein L16p/L10e trd_0978 PF07650 KH domain trd_0978 PF00189 Ribosomal protein S3, C-terminal domain trd_0979 PF00237 Ribosomal protein L22p/L17e trd_0980 PF00203 Ribosomal protein S19 trd_0981 PF00181 Ribosomal Proteins L2, RNA binding domain trd_0981 PF03947 Ribosomal Proteins L2, C-terminal domain trd_0982 PF00276 Ribosomal protein L23 trd_0983 PF00573 Ribosomal protein L4/L1 family trd_0984 PF00297 Ribosomal protein L3 trd_0985 PF00338 Ribosomal protein S10p/S20e trd_0986 PF03143 Elongation factor Tu C-terminal domain trd_0986 PF03144 Elongation factor Tu domain 2 trd_0986 PF00009 Elongation factor Tu GTP binding domain trd_0987 PF00679 Elongation factor G C-terminus trd_0987 PF03144 Elongation factor Tu domain 2 trd_0987 PF14492 Elongation Factor G, domain II trd_0987 PF00009 Elongation factor Tu GTP binding domain trd_0987 PF03764 Elongation factor G, domain IV trd_0988 PF00177 Ribosomal protein S7p/S5e trd_0989 PF00164 Ribosomal protein S12/S23 trd_0990 PF05000 RNA polymerase Rpb1, domain 4 trd_0990 PF04997 RNA polymerase Rpb1, domain 1 trd_0990 PF00623 RNA polymerase Rpb1, domain 2 trd_0990 PF04983 RNA polymerase Rpb1, domain 3 trd_0990 PF04998 RNA polymerase Rpb1, domain 5 trd_0991 PF10385 RNA polymerase beta subunit external 1 domain trd_0991 PF04563 RNA polymerase beta subunit trd_0991 PF00562 RNA polymerase Rpb2, domain 6 trd_0991 PF04560 RNA polymerase Rpb2, domain 7 trd_0991 PF04561 RNA polymerase Rpb2, domain 2 trd_0991 PF04565 RNA polymerase Rpb2, domain 3 trd_0998 PF00318 Ribosomal protein S2 trd_0999 PF00889 Elongation factor TS trd_1000 PF00696 Amino acid kinase family trd_1001 PF01765 Ribosome recycling factor trd_1002 PF01255 Putative undecaprenyl diphosphate synthase trd_1004 PF00156 Phosphoribosyl transferase domain trd_1005 PF13288 DXP reductoisomerase C-terminal domain trd_1005 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase trd_1005 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain trd_1011 PF00437 Type II/IV secretion system protein trd_1012 PF00196 Bacterial regulatory proteins, luxR family trd_1012 PF00072 Response regulator receiver domain trd_1014 PF09924 Uncharacterised conserved protein (DUF2156) trd_1014 PF03706 Lysylphosphatidylglycerol synthase TM region trd_1022 PF07722 Peptidase C26 trd_1023 PF00004 ATPase family associated with various cellular activities (AAA) trd_1023 PF02190 ATP-dependent protease La (LON) substrate-binding domain trd_1023 PF05362 Lon protease (S16) C-terminal proteolytic domain trd_1025 PF01040 UbiA prenyltransferase family trd_1027 PF00348 Polyprenyl synthetase trd_1029 PF01156 Inosine-uridine preferring nucleoside hydrolase trd_1031 PF13660 Domain of unknown function (DUF4147) trd_1031 PF05161 MOFRL family trd_1032 PF01479 S4 domain trd_1032 PF00849 RNA pseudouridylate synthase trd_1033 PF01252 Signal peptidase (SPase) II trd_1034 PF18073 Rubredoxin metal binding domain trd_1035 PF07724 AAA domain (Cdc48 subfamily) trd_1035 PF02861 Clp amino terminal domain, pathogenicity island component trd_1035 PF17871 AAA lid domain trd_1035 PF00004 ATPase family associated with various cellular activities (AAA) trd_1035 PF10431 C-terminal, D2-small domain, of ClpB protein trd_1036 PF00575 S1 RNA binding domain trd_1037 PF00266 Aminotransferase class-V trd_1040 PF08447 PAS fold trd_1040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain trd_1040 PF13426 PAS domain trd_1041 PF04055 Radical SAM superfamily trd_1041 PF06463 Molybdenum Cofactor Synthesis C trd_1042 PF02585 GlcNAc-PI de-N-acetylase trd_1043 PF13393 Histidyl-tRNA synthetase trd_1043 PF03129 Anticodon binding domain trd_1044 PF00994 Probable molybdopterin binding domain trd_1045 PF01546 Peptidase family M20/M25/M40 trd_1045 PF07687 Peptidase dimerisation domain trd_1046 PF02021 Uncharacterised protein family UPF0102 trd_1047 PF01351 Ribonuclease HII trd_1048 PF01245 Ribosomal protein L19 trd_1049 PF02219 Methylenetetrahydrofolate reductase trd_1049 PF02574 Homocysteine S-methyltransferase trd_1050 PF04542 Sigma-70 region 2 trd_1050 PF08281 Sigma-70, region 4 trd_1053 PF03129 Anticodon binding domain trd_1053 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) trd_1054 PF02195 ParB-like nuclease domain trd_1054 PF17762 HTH domain found in ParB protein trd_1055 PF00589 Phage integrase family trd_1055 PF02899 Phage integrase, N-terminal SAM-like domain trd_1056 PF05222 Alanine dehydrogenase/PNT, N-terminal domain trd_1056 PF01262 Alanine dehydrogenase/PNT, C-terminal domain trd_1057 PF02163 Peptidase family M50 trd_1057 PF17820 PDZ domain trd_1058 PF04551 GcpE protein trd_1059 PF00294 pfkB family carbohydrate kinase trd_1060 PF00311 Phosphoenolpyruvate carboxylase trd_1061 PF08331 Domain of unknown function (DUF1730) trd_1062 PF03309 Type III pantothenate kinase trd_1063 PF05343 M42 glutamyl aminopeptidase trd_1064 PF03144 Elongation factor Tu domain 2 trd_1064 PF00009 Elongation factor Tu GTP binding domain trd_1064 PF14492 Elongation Factor G, domain II trd_1064 PF00679 Elongation factor G C-terminus trd_1064 PF03764 Elongation factor G, domain IV trd_1065 PF13456 Reverse transcriptase-like trd_1065 PF00300 Histidine phosphatase superfamily (branch 1) trd_1067 PF03129 Anticodon binding domain trd_1067 PF02824 TGS domain trd_1067 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) trd_1067 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain trd_1068 PF01244 Membrane dipeptidase (Peptidase family M19) trd_1070 PF13344 Haloacid dehalogenase-like hydrolase trd_1071 PF01546 Peptidase family M20/M25/M40 trd_1071 PF07687 Peptidase dimerisation domain trd_1072 PF03737 Aldolase/RraA trd_1075 PF00005 ABC transporter trd_1075 PF13732 Domain of unknown function (DUF4162) trd_1076 PF01047 MarR family trd_1078 PF01967 MoaC family trd_1080 PF00202 Aminotransferase class-III trd_1081 PF01272 Transcription elongation factor, GreA/GreB, C-term trd_1081 PF03449 Transcription elongation factor, N-terminal trd_1082 PF04073 Aminoacyl-tRNA editing domain trd_1082 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) trd_1082 PF03129 Anticodon binding domain trd_1084 PF01424 R3H domain trd_1084 PF14804 Jag N-terminus trd_1085 PF14849 YidC periplasmic domain trd_1085 PF02096 60Kd inner membrane protein trd_1086 PF01809 Putative membrane protein insertion efficiency factor trd_1087 PF00825 Ribonuclease P trd_1088 PF00468 Ribosomal protein L34 trd_1089 PF00144 Beta-lactamase trd_1091 PF00072 Response regulator receiver domain trd_1093 PF00133 tRNA synthetases class I (I, L, M and V) trd_1093 PF08264 Anticodon-binding domain of tRNA trd_1096 PF00365 Phosphofructokinase trd_1098 PF01177 Asp/Glu/Hydantoin racemase trd_1102 PF02630 SCO1/SenC trd_1103 PF00202 Aminotransferase class-III trd_1105 PF01493 GXGXG motif trd_1105 PF01645 Conserved region in glutamate synthase trd_1105 PF04898 Glutamate synthase central domain trd_1105 PF00310 Glutamine amidotransferases class-II trd_1106 PF00543 Nitrogen regulatory protein P-II trd_1107 PF00909 Ammonium Transporter Family trd_1109 PF01624 MutS domain I trd_1109 PF00488 MutS domain V trd_1109 PF05190 MutS family domain IV trd_1109 PF05192 MutS domain III trd_1109 PF05188 MutS domain II trd_1113 PF00474 Sodium:solute symporter family trd_1114 PF07733 Bacterial DNA polymerase III alpha NTPase domain trd_1114 PF00929 Exonuclease trd_1114 PF17657 Bacterial DNA polymerase III alpha subunit finger domain trd_1114 PF14579 Helix-hairpin-helix motif trd_1114 PF02811 PHP domain trd_1117 PF16177 Acetyl-coenzyme A synthetase N-terminus trd_1117 PF00501 AMP-binding enzyme trd_1117 PF13193 AMP-binding enzyme C-terminal domain trd_1118 PF00892 EamA-like transporter family trd_1119 PF01804 Penicillin amidase trd_1122 PF01488 Shikimate / quinate 5-dehydrogenase trd_1122 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain trd_1123 PF00202 Aminotransferase class-III trd_1124 PF00490 Delta-aminolevulinic acid dehydratase trd_1125 PF03900 Porphobilinogen deaminase, C-terminal domain trd_1125 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain trd_1127 PF01227 GTP cyclohydrolase I trd_1128 PF12804 MobA-like NTP transferase domain trd_1128 PF01066 CDP-alcohol phosphatidyltransferase trd_1129 PF03328 HpcH/HpaI aldolase/citrate lyase family trd_1131 PF00271 Helicase conserved C-terminal domain trd_1131 PF00270 DEAD/DEAH box helicase trd_1132 PF01709 Transcriptional regulator trd_1134 PF03841 L-seryl-tRNA selenium transferase trd_1135 PF17912 MalK OB fold domain trd_1135 PF00005 ABC transporter trd_1135 PF03459 TOBE domain trd_1136 PF00528 Binding-protein-dependent transport system inner membrane component trd_1137 PF00528 Binding-protein-dependent transport system inner membrane component trd_1139 PF13193 AMP-binding enzyme C-terminal domain trd_1139 PF00501 AMP-binding enzyme trd_1139 PF16177 Acetyl-coenzyme A synthetase N-terminus trd_1140 PF04075 F420H(2)-dependent quinone reductase trd_1141 PF00923 Transaldolase/Fructose-6-phosphate aldolase trd_1142 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain trd_1142 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase trd_1143 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain trd_1143 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain trd_1144 PF01471 Putative peptidoglycan binding domain trd_1144 PF10128 Glucose-6-phosphate dehydrogenase subunit trd_1146 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase trd_1147 PF04238 Protein of unknown function (DUF420) trd_1149 PF00005 ABC transporter trd_1156 PF01386 Ribosomal L25p family trd_1156 PF14693 Ribosomal protein TL5, C-terminal domain trd_1157 PF07690 Major Facilitator Superfamily trd_1158 PF00440 Bacterial regulatory proteins, tetR family trd_1160 PF00561 alpha/beta hydrolase fold trd_1163 PF01593 Flavin containing amine oxidoreductase trd_1164 PF02401 LytB protein trd_1165 PF13183 4Fe-4S dicluster domain trd_1165 PF02913 FAD linked oxidases, C-terminal domain trd_1165 PF01565 FAD binding domain trd_1166 PF08299 Bacterial dnaA protein helix-turn-helix trd_1166 PF11638 DnaA N-terminal domain trd_1166 PF00308 Bacterial dnaA protein trd_1170 PF07690 Major Facilitator Superfamily trd_1172 PF00581 Rhodanese-like domain trd_1173 PF01592 NifU-like N terminal domain trd_1176 PF02811 PHP domain trd_1177 PF01784 NIF3 (NGG1p interacting factor 3) trd_1178 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I trd_1178 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain trd_1178 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III trd_1178 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II trd_1182 PF14031 Putative serine dehydratase domain trd_1182 PF01168 Alanine racemase, N-terminal domain trd_1183 PF00551 Formyl transferase trd_1184 PF00117 Glutamine amidotransferase class-I trd_1184 PF02540 NAD synthase trd_1184 PF00958 GMP synthase C terminal domain trd_1185 PF00072 Response regulator receiver domain trd_1185 PF00196 Bacterial regulatory proteins, luxR family trd_1186 PF02843 Phosphoribosylglycinamide synthetase, C domain trd_1186 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain trd_1186 PF02844 Phosphoribosylglycinamide synthetase, N domain trd_1187 PF00293 NUDIX domain trd_1190 PF13382 Adenine deaminase C-terminal domain trd_1190 PF01979 Amidohydrolase family trd_1192 PF13411 MerR HTH family regulatory protein trd_1193 PF03437 BtpA family trd_1194 PF01368 DHH family trd_1194 PF02272 DHHA1 domain trd_1194 PF17768 RecJ OB domain trd_1194 PF10141 Single-strand DNA-specific exonuclease, C terminal domain trd_1195 PF18357 Diphteria toxin repressor SH3 domain trd_1195 PF02742 Iron dependent repressor, metal binding and dimerisation domain trd_1195 PF01325 Iron dependent repressor, N-terminal DNA binding domain trd_1196 PF10518 TAT (twin-arginine translocation) pathway signal sequence trd_1196 PF00149 Calcineurin-like phosphoesterase trd_1199 PF04298 Putative neutral zinc metallopeptidase trd_1201 PF06689 ClpX C4-type zinc finger trd_1201 PF10431 C-terminal, D2-small domain, of ClpB protein trd_1201 PF07724 AAA domain (Cdc48 subfamily) trd_1202 PF00574 Clp protease trd_1203 PF05697 Bacterial trigger factor protein (TF) trd_1203 PF05698 Bacterial trigger factor protein (TF) C-terminus trd_1206 PF01799 [2Fe-2S] binding domain trd_1206 PF00111 2Fe-2S iron-sulfur cluster binding domain trd_1207 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_1207 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1208 PF03450 CO dehydrogenase flavoprotein C-terminal domain trd_1208 PF00941 FAD binding domain in molybdopterin dehydrogenase trd_1212 PF13478 XdhC Rossmann domain trd_1212 PF02625 XdhC and CoxI family trd_1213 PF12804 MobA-like NTP transferase domain trd_1213 PF00132 Bacterial transferase hexapeptide (six repeats) trd_1214 PF00293 NUDIX domain trd_1215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_1215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1217 PF01578 Cytochrome C assembly protein trd_1221 PF03918 Cytochrome C biogenesis protein trd_1222 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal trd_1222 PF01578 Cytochrome C assembly protein trd_1223 PF03100 CcmE trd_1225 PF00578 AhpC/TSA family trd_1226 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) trd_1227 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain trd_1227 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain trd_1228 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain trd_1228 PF02874 ATP synthase alpha/beta family, beta-barrel domain trd_1229 PF00231 ATP synthase trd_1230 PF02874 ATP synthase alpha/beta family, beta-barrel domain trd_1230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain trd_1230 PF00306 ATP synthase alpha/beta chain, C terminal domain trd_1231 PF00213 ATP synthase delta (OSCP) subunit trd_1232 PF00430 ATP synthase B/B' CF(0) trd_1233 PF00137 ATP synthase subunit C trd_1234 PF00119 ATP synthase A chain trd_1236 PF06418 CTP synthase N-terminus trd_1236 PF00117 Glutamine amidotransferase class-I trd_1238 PF02631 RecX family trd_1240 PF00133 tRNA synthetases class I (I, L, M and V) trd_1240 PF08264 Anticodon-binding domain of tRNA trd_1240 PF09334 tRNA synthetases class I (M) trd_1240 PF13603 Leucyl-tRNA synthetase, Domain 2 trd_1243 PF04055 Radical SAM superfamily trd_1243 PF00919 Uncharacterized protein family UPF0004 trd_1243 PF18693 TRAM domain trd_1246 PF05698 Bacterial trigger factor protein (TF) C-terminus trd_1247 PF01084 Ribosomal protein S18 trd_1248 PF00436 Single-strand binding protein family trd_1249 PF01250 Ribosomal protein S6 trd_1251 PF00288 GHMP kinases N terminal domain trd_1251 PF08544 GHMP kinases C terminal trd_1252 PF00291 Pyridoxal-phosphate dependent enzyme trd_1253 PF00528 Binding-protein-dependent transport system inner membrane component trd_1253 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_1254 PF00528 Binding-protein-dependent transport system inner membrane component trd_1255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1258 PF08323 Starch synthase catalytic domain trd_1258 PF00534 Glycosyl transferases group 1 trd_1259 PF00483 Nucleotidyl transferase trd_1259 PF00132 Bacterial transferase hexapeptide (six repeats) trd_1260 PF01039 Carboxyl transferase domain trd_1260 PF17848 Acetyl-coA carboxylase zinc finger domain trd_1261 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit trd_1262 PF00011 Hsp20/alpha crystallin family trd_1263 PF00571 CBS domain trd_1263 PF02163 Peptidase family M50 trd_1264 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain trd_1264 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain trd_1265 PF03979 Sigma-70 factor, region 1.1 trd_1265 PF04539 Sigma-70 region 3 trd_1265 PF04542 Sigma-70 region 2 trd_1265 PF04545 Sigma-70, region 4 trd_1265 PF00140 Sigma-70 factor, region 1.2 trd_1268 PF16200 C-terminal region of band_7 trd_1268 PF01145 SPFH domain / Band 7 family trd_1269 PF01343 Peptidase family S49 trd_1270 PF03618 Kinase/pyrophosphorylase trd_1273 PF00486 Transcriptional regulatory protein, C terminal trd_1273 PF00072 Response regulator receiver domain trd_1274 PF00512 His Kinase A (phospho-acceptor) domain trd_1274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_1274 PF00672 HAMP domain trd_1276 PF02780 Transketolase, C-terminal domain trd_1276 PF02779 Transketolase, pyrimidine binding domain trd_1276 PF13292 1-deoxy-D-xylulose-5-phosphate synthase trd_1277 PF02527 rRNA small subunit methyltransferase G trd_1278 PF14759 Reductase C-terminal trd_1278 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_1279 PF00528 Binding-protein-dependent transport system inner membrane component trd_1280 PF00528 Binding-protein-dependent transport system inner membrane component trd_1280 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_1281 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1283 PF13344 Haloacid dehalogenase-like hydrolase trd_1284 PF00891 O-methyltransferase domain trd_1285 PF00535 Glycosyl transferase family 2 trd_1288 PF18146 Damage-inducible protein CinA KH domain trd_1288 PF02464 Competence-damaged protein trd_1288 PF00994 Probable molybdopterin binding domain trd_1289 PF02130 Uncharacterized protein family UPF0054 trd_1290 PF07697 7TM-HD extracellular trd_1290 PF01966 HD domain trd_1290 PF07698 7TM receptor with intracellular HD hydrolase trd_1291 PF09424 Yqey-like protein trd_1295 PF08241 Methyltransferase domain trd_1300 PF00118 TCP-1/cpn60 chaperonin family trd_1301 PF00166 Chaperonin 10 Kd subunit trd_1303 PF00155 Aminotransferase class I and II trd_1305 PF00586 AIR synthase related protein, N-terminal domain trd_1305 PF02769 AIR synthase related protein, C-terminal domain trd_1306 PF00398 Ribosomal RNA adenine dimethylase trd_1307 PF08544 GHMP kinases C terminal trd_1307 PF00288 GHMP kinases N terminal domain trd_1309 PF00899 ThiF family trd_1310 PF14464 Prokaryotic homologs of the JAB domain trd_1311 PF02597 ThiS family trd_1312 PF00291 Pyridoxal-phosphate dependent enzyme trd_1313 PF03793 PASTA domain trd_1313 PF00069 Protein kinase domain trd_1318 PF04199 Putative cyclase trd_1322 PF01047 MarR family trd_1323 PF02782 FGGY family of carbohydrate kinases, C-terminal domain trd_1323 PF00370 FGGY family of carbohydrate kinases, N-terminal domain trd_1324 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) trd_1325 PF00809 Pterin binding enzyme trd_1326 PF02152 Dihydroneopterin aldolase trd_1329 PF00589 Phage integrase family trd_1329 PF02899 Phage integrase, N-terminal SAM-like domain trd_1332 PF01925 Sulfite exporter TauE/SafE trd_1335 PF01925 Sulfite exporter TauE/SafE trd_1336 PF03816 Cell envelope-related transcriptional attenuator domain trd_1340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain trd_1340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain trd_1340 PF02770 Acyl-CoA dehydrogenase, middle domain trd_1341 PF01661 Macro domain trd_1342 PF00180 Isocitrate/isopropylmalate dehydrogenase trd_1343 PF13378 Enolase C-terminal domain-like trd_1343 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_1345 PF00296 Luciferase-like monooxygenase trd_1349 PF01717 Cobalamin-independent synthase, Catalytic domain trd_1349 PF08267 Cobalamin-independent synthase, N-terminal domain trd_1352 PF05167 Uncharacterised ACR (DUF711) trd_1354 PF02585 GlcNAc-PI de-N-acetylase trd_1355 PF00296 Luciferase-like monooxygenase trd_1360 PF04264 YceI-like domain trd_1362 PF01638 HxlR-like helix-turn-helix trd_1363 PF01497 Periplasmic binding protein trd_1364 PF02515 CoA-transferase family III trd_1366 PF00072 Response regulator receiver domain trd_1366 PF00196 Bacterial regulatory proteins, luxR family trd_1369 PF03099 Biotin/lipoate A/B protein ligase family trd_1369 PF12706 Beta-lactamase superfamily domain trd_1372 PF03441 FAD binding domain of DNA photolyase trd_1372 PF00875 DNA photolyase trd_1373 PF03717 Penicillin-binding Protein dimerisation domain trd_1373 PF00905 Penicillin binding protein transpeptidase domain trd_1374 PF01593 Flavin containing amine oxidoreductase trd_1375 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase trd_1375 PF14572 Phosphoribosyl synthetase-associated domain trd_1376 PF14622 Ribonuclease-III-like trd_1376 PF00035 Double-stranded RNA binding motif trd_1378 PF02641 Uncharacterized ACR, COG1993 trd_1379 PF02537 CrcB-like protein, Camphor Resistance (CrcB) trd_1380 PF02416 mttA/Hcf106 family trd_1383 PF00762 Ferrochelatase trd_1384 PF01208 Uroporphyrinogen decarboxylase (URO-D) trd_1385 PF08447 PAS fold trd_1385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain trd_1385 PF13426 PAS domain trd_1387 PF01557 Fumarylacetoacetate (FAA) hydrolase family trd_1388 PF01557 Fumarylacetoacetate (FAA) hydrolase family trd_1389 PF01361 Tautomerase enzyme trd_1390 PF00561 alpha/beta hydrolase fold trd_1391 PF01613 Flavin reductase like domain trd_1392 PF07836 DmpG-like communication domain trd_1392 PF00682 HMGL-like trd_1393 PF01118 Semialdehyde dehydrogenase, NAD binding domain trd_1393 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation trd_1394 PF09339 IclR helix-turn-helix domain trd_1394 PF01614 Bacterial transcriptional regulator trd_1395 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal trd_1395 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal trd_1396 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily trd_1398 PF02653 Branched-chain amino acid transport system / permease component trd_1400 PF12399 Branched-chain amino acid ATP-binding cassette transporter trd_1400 PF00005 ABC transporter trd_1401 PF00005 ABC transporter trd_1404 PF02653 Branched-chain amino acid transport system / permease component trd_1405 PF12399 Branched-chain amino acid ATP-binding cassette transporter trd_1405 PF00005 ABC transporter trd_1406 PF00005 ABC transporter trd_1408 PF00268 Ribonucleotide reductase, small chain trd_1409 PF03477 ATP cone domain trd_1409 PF02867 Ribonucleotide reductase, barrel domain trd_1409 PF00317 Ribonucleotide reductase, all-alpha domain trd_1414 PF00403 Heavy-metal-associated domain trd_1415 PF02583 Metal-sensitive transcriptional repressor trd_1420 PF05231 MASE1 trd_1420 PF00563 EAL domain trd_1421 PF00202 Aminotransferase class-III trd_1422 PF00037 4Fe-4S binding domain trd_1424 PF01197 Ribosomal protein L31 trd_1425 PF01016 Ribosomal L27 protein trd_1426 PF00829 Ribosomal prokaryotic L21 protein trd_1429 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain trd_1429 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain trd_1433 PF07690 Major Facilitator Superfamily trd_1435 PF01098 Cell cycle protein trd_1436 PF04055 Radical SAM superfamily trd_1436 PF06969 HemN C-terminal domain trd_1437 PF13614 AAA domain trd_1438 PF00478 IMP dehydrogenase / GMP reductase domain trd_1438 PF00571 CBS domain trd_1449 PF00689 Cation transporting ATPase, C-terminus trd_1449 PF00690 Cation transporter/ATPase, N-terminus trd_1450 PF01266 FAD dependent oxidoreductase trd_1450 PF16350 FAD dependent oxidoreductase central domain trd_1450 PF01571 Aminomethyltransferase folate-binding domain trd_1450 PF08669 Glycine cleavage T-protein C-terminal barrel domain trd_1451 PF00689 Cation transporting ATPase, C-terminus trd_1451 PF00690 Cation transporter/ATPase, N-terminus trd_1453 PF01556 DnaJ C terminal domain trd_1453 PF00226 DnaJ domain trd_1453 PF00684 DnaJ central domain trd_1459 PF07687 Peptidase dimerisation domain trd_1459 PF01546 Peptidase family M20/M25/M40 trd_1461 PF01113 Dihydrodipicolinate reductase, N-terminus trd_1464 PF13419 Haloacid dehalogenase-like hydrolase trd_1468 PF00171 Aldehyde dehydrogenase family trd_1469 PF10415 Fumarase C C-terminus trd_1469 PF00206 Lyase trd_1470 PF12838 4Fe-4S dicluster domain trd_1471 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region trd_1471 PF04879 Molybdopterin oxidoreductase Fe4S4 domain trd_1471 PF13237 4Fe-4S dicluster domain trd_1471 PF00384 Molybdopterin oxidoreductase trd_1471 PF01568 Molydopterin dinucleotide binding domain trd_1474 PF02637 GatB domain trd_1474 PF02934 GatB/GatE catalytic domain trd_1476 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase trd_1476 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain trd_1478 PF02254 TrkA-N domain trd_1478 PF02080 TrkA-C domain trd_1479 PF02254 TrkA-N domain trd_1479 PF02080 TrkA-C domain trd_1484 PF01022 Bacterial regulatory protein, arsR family trd_1486 PF02683 Cytochrome C biogenesis protein transmembrane region trd_1487 PF07690 Major Facilitator Superfamily trd_1492 PF00561 alpha/beta hydrolase fold trd_1493 PF00676 Dehydrogenase E1 component trd_1494 PF02780 Transketolase, C-terminal domain trd_1494 PF02779 Transketolase, pyrimidine binding domain trd_1496 PF02308 MgtC family trd_1503 PF00005 ABC transporter trd_1505 PF05193 Peptidase M16 inactive domain trd_1505 PF00675 Insulinase (Peptidase family M16) trd_1506 PF00753 Metallo-beta-lactamase superfamily trd_1506 PF16123 Hydroxyacylglutathione hydrolase C-terminus trd_1507 PF00994 Probable molybdopterin binding domain trd_1507 PF18146 Damage-inducible protein CinA KH domain trd_1507 PF02464 Competence-damaged protein trd_1508 PF07690 Major Facilitator Superfamily trd_1511 PF02245 Methylpurine-DNA glycosylase (MPG) trd_1512 PF08264 Anticodon-binding domain of tRNA trd_1512 PF00133 tRNA synthetases class I (I, L, M and V) trd_1512 PF10458 Valyl tRNA synthetase tRNA binding arm trd_1515 PF00202 Aminotransferase class-III trd_1516 PF00696 Amino acid kinase family trd_1517 PF01209 ubiE/COQ5 methyltransferase family trd_1518 PF02774 Semialdehyde dehydrogenase, dimerisation domain trd_1518 PF01118 Semialdehyde dehydrogenase, NAD binding domain trd_1519 PF08443 RimK-like ATP-grasp domain trd_1520 PF01546 Peptidase family M20/M25/M40 trd_1521 PF08443 RimK-like ATP-grasp domain trd_1523 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1524 PF00528 Binding-protein-dependent transport system inner membrane component trd_1525 PF00528 Binding-protein-dependent transport system inner membrane component trd_1525 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_1528 PF00403 Heavy-metal-associated domain trd_1529 PF01022 Bacterial regulatory protein, arsR family trd_1530 PF08264 Anticodon-binding domain of tRNA trd_1530 PF09334 tRNA synthetases class I (M) trd_1531 PF00497 Bacterial extracellular solute-binding proteins, family 3 trd_1531 PF01464 Transglycosylase SLT domain trd_1535 PF00535 Glycosyl transferase family 2 trd_1537 PF07690 Major Facilitator Superfamily trd_1541 PF03808 Glycosyl transferase WecB/TagA/CpsF family trd_1543 PF00005 ABC transporter trd_1543 PF00664 ABC transporter transmembrane region trd_1544 PF01467 Cytidylyltransferase-like trd_1544 PF00294 pfkB family carbohydrate kinase trd_1547 PF00850 Histone deacetylase domain trd_1549 PF12344 Ultra-violet resistance protein B trd_1549 PF02151 UvrB/uvrC motif trd_1549 PF04851 Type III restriction enzyme, res subunit trd_1549 PF17757 UvrB interaction domain trd_1549 PF00271 Helicase conserved C-terminal domain trd_1551 PF00196 Bacterial regulatory proteins, luxR family trd_1551 PF00072 Response regulator receiver domain trd_1552 PF07730 Histidine kinase trd_1552 PF05384 Sensor protein DegS trd_1552 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_1553 PF01521 Iron-sulphur cluster biosynthesis trd_1557 PF03951 Glutamine synthetase, beta-Grasp domain trd_1557 PF00120 Glutamine synthetase, catalytic domain trd_1558 PF00120 Glutamine synthetase, catalytic domain trd_1558 PF03951 Glutamine synthetase, beta-Grasp domain trd_1559 PF03707 Bacterial signalling protein N terminal repeat trd_1559 PF00563 EAL domain trd_1559 PF00990 Diguanylate cyclase, GGDEF domain trd_1562 PF02190 ATP-dependent protease La (LON) substrate-binding domain trd_1562 PF05362 Lon protease (S16) C-terminal proteolytic domain trd_1562 PF00004 ATPase family associated with various cellular activities (AAA) trd_1568 PF00899 ThiF family trd_1569 PF02153 Prephenate dehydrogenase trd_1572 PF00171 Aldehyde dehydrogenase family trd_1574 PF00296 Luciferase-like monooxygenase trd_1581 PF01276 Orn/Lys/Arg decarboxylase, major domain trd_1581 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain trd_1587 PF00082 Subtilase family trd_1593 PF00535 Glycosyl transferase family 2 trd_1599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_1599 PF00512 His Kinase A (phospho-acceptor) domain trd_1599 PF00672 HAMP domain trd_1599 PF13426 PAS domain trd_1600 PF00486 Transcriptional regulatory protein, C terminal trd_1600 PF00072 Response regulator receiver domain trd_1601 PF02481 DNA recombination-mediator protein A trd_1601 PF17782 DprA winged helix domain trd_1602 PF01050 Mannose-6-phosphate isomerase trd_1602 PF00483 Nucleotidyl transferase trd_1603 PF01131 DNA topoisomerase trd_1603 PF01751 Toprim domain trd_1603 PF01396 Topoisomerase DNA binding C4 zinc finger trd_1604 PF00227 Proteasome subunit trd_1605 PF07724 AAA domain (Cdc48 subfamily) trd_1605 PF10431 C-terminal, D2-small domain, of ClpB protein trd_1605 PF00004 ATPase family associated with various cellular activities (AAA) trd_1606 PF00535 Glycosyl transferase family 2 trd_1607 PF00480 ROK family trd_1609 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1610 PF01063 Amino-transferase class IV trd_1611 PF00202 Aminotransferase class-III trd_1612 PF00291 Pyridoxal-phosphate dependent enzyme trd_1613 PF00271 Helicase conserved C-terminal domain trd_1613 PF17764 3′ DNA-binding domain (3′BD) trd_1613 PF04851 Type III restriction enzyme, res subunit trd_1613 PF18319 PriA DNA helicase Cys-rich region (CRR) domain trd_1613 PF18074 Primosomal protein N C-terminal domain trd_1614 PF01327 Polypeptide deformylase trd_1615 PF00625 Guanylate kinase trd_1617 PF00902 Sec-independent protein translocase protein (TatC) trd_1618 PF00550 Phosphopantetheine attachment site trd_1619 PF01029 NusB family trd_1620 PF02785 Biotin carboxylase C-terminal domain trd_1620 PF00289 Biotin carboxylase, N-terminal domain trd_1620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain trd_1622 PF00698 Acyl transferase domain trd_1623 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III trd_1623 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal trd_1626 PF03328 HpcH/HpaI aldolase/citrate lyase family trd_1627 PF01063 Amino-transferase class IV trd_1628 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1629 PF00005 ABC transporter trd_1629 PF08352 Oligopeptide/dipeptide transporter, C-terminal region trd_1630 PF00005 ABC transporter trd_1630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region trd_1631 PF02163 Peptidase family M50 trd_1632 PF02616 Segregation and condensation protein ScpA trd_1633 PF04079 Segregation and condensation complex subunit ScpB trd_1634 PF00266 Aminotransferase class-V trd_1635 PF02082 Transcriptional regulator trd_1638 PF01628 HrcA protein C terminal domain trd_1638 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding trd_1639 PF01025 GrpE trd_1640 PF00012 Hsp70 protein trd_1647 PF01510 N-acetylmuramoyl-L-alanine amidase trd_1647 PF01471 Putative peptidoglycan binding domain trd_1657 PF05651 Putative sugar diacid recognition trd_1657 PF17853 GGDEF-like domain trd_1657 PF13556 PucR C-terminal helix-turn-helix domain trd_1661 PF01569 PAP2 superfamily trd_1662 PF02401 LytB protein trd_1663 PF13419 Haloacid dehalogenase-like hydrolase trd_1664 PF04321 RmlD substrate binding domain trd_1666 PF01261 Xylose isomerase-like TIM barrel trd_1667 PF07730 Histidine kinase trd_1667 PF05384 Sensor protein DegS trd_1667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_1668 PF01119 DNA mismatch repair protein, C-terminal domain trd_1668 PF08676 MutL C terminal dimerisation domain trd_1669 PF00196 Bacterial regulatory proteins, luxR family trd_1669 PF00072 Response regulator receiver domain trd_1671 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1672 PF00528 Binding-protein-dependent transport system inner membrane component trd_1673 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_1673 PF00528 Binding-protein-dependent transport system inner membrane component trd_1674 PF00528 Binding-protein-dependent transport system inner membrane component trd_1675 PF00528 Binding-protein-dependent transport system inner membrane component trd_1677 PF00118 TCP-1/cpn60 chaperonin family trd_1679 PF14489 QueF-like protein trd_1681 PF00391 PEP-utilising enzyme, mobile domain trd_1681 PF00668 Condensation domain trd_1681 PF00501 AMP-binding enzyme trd_1681 PF08241 Methyltransferase domain trd_1681 PF00975 Thioesterase domain trd_1681 PF00550 Phosphopantetheine attachment site trd_1681 PF13193 AMP-binding enzyme C-terminal domain trd_1682 PF00364 Biotin-requiring enzyme trd_1683 PF00364 Biotin-requiring enzyme trd_1683 PF00682 HMGL-like trd_1683 PF02436 Conserved carboxylase domain trd_1684 PF13419 Haloacid dehalogenase-like hydrolase trd_1685 PF14535 AMP-binding enzyme C-terminal domain trd_1685 PF00501 AMP-binding enzyme trd_1687 PF07859 alpha/beta hydrolase fold trd_1690 PF00682 HMGL-like trd_1690 PF08502 LeuA allosteric (dimerisation) domain trd_1691 PF00330 Aconitase family (aconitate hydratase) trd_1692 PF00694 Aconitase C-terminal domain trd_1693 PF00180 Isocitrate/isopropylmalate dehydrogenase trd_1695 PF00704 Glycosyl hydrolases family 18 trd_1695 PF01476 LysM domain trd_1696 PF01220 Dehydroquinase class II trd_1697 PF01321 Creatinase/Prolidase N-terminal domain trd_1697 PF00557 Metallopeptidase family M24 trd_1698 PF01132 Elongation factor P (EF-P) OB domain trd_1698 PF08207 Elongation factor P (EF-P) KOW-like domain trd_1698 PF09285 Elongation factor P, C-terminal trd_1699 PF00364 Biotin-requiring enzyme trd_1701 PF02609 Exonuclease VII small subunit trd_1703 PF05922 Peptidase inhibitor I9 trd_1703 PF00082 Subtilase family trd_1708 PF02391 MoaE protein trd_1709 PF03453 MoeA N-terminal region (domain I and II) trd_1709 PF00994 Probable molybdopterin binding domain trd_1709 PF03454 MoeA C-terminal region (domain IV) trd_1711 PF04607 Region found in RelA / SpoT proteins trd_1711 PF13291 ACT domain trd_1711 PF02824 TGS domain trd_1712 PF09269 Domain of unknown function (DUF1967) trd_1712 PF01926 50S ribosome-binding GTPase trd_1712 PF01018 GTP1/OBG trd_1713 PF04542 Sigma-70 region 2 trd_1713 PF04539 Sigma-70 region 3 trd_1713 PF03979 Sigma-70 factor, region 1.1 trd_1713 PF04545 Sigma-70, region 4 trd_1713 PF04539 Sigma-70 region 3 trd_1713 PF04542 Sigma-70 region 2 trd_1713 PF00140 Sigma-70 factor, region 1.2 trd_1713 PF03979 Sigma-70 factor, region 1.1 trd_1713 PF04545 Sigma-70, region 4 trd_1713 PF00140 Sigma-70 factor, region 1.2 trd_1714 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain trd_1714 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain trd_1715 PF00005 ABC transporter trd_1715 PF16326 ABC transporter C-terminal domain trd_1715 PF12848 ABC transporter trd_1716 PF01121 Dephospho-CoA kinase trd_1718 PF02163 Peptidase family M50 trd_1718 PF00571 CBS domain trd_1722 PF02580 D-Tyr-tRNA(Tyr) deacylase trd_1723 PF02542 YgbB family trd_1724 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase trd_1725 PF01938 TRAM domain trd_1726 PF02811 PHP domain trd_1727 PF04232 Stage V sporulation protein S (SpoVS) trd_1728 PF00224 Pyruvate kinase, barrel domain trd_1728 PF02887 Pyruvate kinase, alpha/beta domain trd_1733 PF00676 Dehydrogenase E1 component trd_1734 PF02780 Transketolase, C-terminal domain trd_1734 PF02779 Transketolase, pyrimidine binding domain trd_1734 PF00364 Biotin-requiring enzyme trd_1735 PF02817 e3 binding domain trd_1735 PF00364 Biotin-requiring enzyme trd_1735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) trd_1740 PF17760 UvrA interaction domain trd_1740 PF17755 UvrA DNA-binding domain trd_1742 PF02403 Seryl-tRNA synthetase N-terminal domain trd_1742 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) trd_1744 PF05853 beta-keto acid cleavage enzyme trd_1746 PF02463 RecF/RecN/SMC N terminal domain trd_1746 PF06470 SMC proteins Flexible Hinge Domain trd_1747 PF16363 GDP-mannose 4,6 dehydratase trd_1752 PF08281 Sigma-70, region 4 trd_1752 PF04542 Sigma-70 region 2 trd_1754 PF00072 Response regulator receiver domain trd_1754 PF00196 Bacterial regulatory proteins, luxR family trd_1756 PF01425 Amidase trd_1757 PF02686 Glu-tRNAGln amidotransferase C subunit trd_1759 PF12169 DNA polymerase III subunits gamma and tau domain III trd_1760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases trd_1761 PF02515 CoA-transferase family III trd_1762 PF00378 Enoyl-CoA hydratase/isomerase trd_1767 PF03358 NADPH-dependent FMN reductase trd_1770 PF00334 Nucleoside diphosphate kinase trd_1773 PF01266 FAD dependent oxidoreductase trd_1777 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain trd_1777 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain trd_1777 PF01842 ACT domain trd_1778 PF00534 Glycosyl transferases group 1 trd_1778 PF13439 Glycosyltransferase Family 4 trd_1780 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 trd_1781 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit trd_1782 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit trd_1783 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit trd_1784 PF00146 NADH dehydrogenase trd_1785 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 trd_1786 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L trd_1787 PF00361 Proton-conducting membrane transporter trd_1787 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus trd_1787 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus trd_1788 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus trd_1788 PF00361 Proton-conducting membrane transporter trd_1789 PF00361 Proton-conducting membrane transporter trd_1791 PF10672 S-adenosylmethionine-dependent methyltransferase trd_1791 PF17785 PUA-like domain trd_1792 PF00155 Aminotransferase class I and II trd_1792 PF00392 Bacterial regulatory proteins, gntR family trd_1793 PF02272 DHHA1 domain trd_1793 PF01411 tRNA synthetases class II (A) trd_1793 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain trd_1794 PF00156 Phosphoribosyl transferase domain trd_1794 PF01738 Dienelactone hydrolase family trd_1795 PF17770 Ribonuclease J C-terminal domain trd_1795 PF00753 Metallo-beta-lactamase superfamily trd_1795 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain trd_1798 PF06508 Queuosine biosynthesis protein QueC trd_1799 PF01926 50S ribosome-binding GTPase trd_1799 PF06071 Protein of unknown function (DUF933) trd_1803 PF00549 CoA-ligase trd_1803 PF02629 CoA binding domain trd_1804 PF08442 ATP-grasp domain trd_1804 PF00549 CoA-ligase trd_1807 PF00676 Dehydrogenase E1 component trd_1808 PF02780 Transketolase, C-terminal domain trd_1808 PF02779 Transketolase, pyrimidine binding domain trd_1810 PF02615 Malate/L-lactate dehydrogenase trd_1813 PF13426 PAS domain trd_1813 PF00563 EAL domain trd_1813 PF00990 Diguanylate cyclase, GGDEF domain trd_1815 PF08471 Class II vitamin B12-dependent ribonucleotide reductase trd_1815 PF02867 Ribonucleotide reductase, barrel domain trd_1816 PF00072 Response regulator receiver domain trd_1816 PF00196 Bacterial regulatory proteins, luxR family trd_1817 PF05384 Sensor protein DegS trd_1817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_1817 PF07730 Histidine kinase trd_1818 PF02978 Signal peptide binding domain trd_1818 PF02881 SRP54-type protein, helical bundle domain trd_1818 PF00448 SRP54-type protein, GTPase domain trd_1819 PF02881 SRP54-type protein, helical bundle domain trd_1819 PF00448 SRP54-type protein, GTPase domain trd_1820 PF04002 RadC-like JAB domain trd_1825 PF00171 Aldehyde dehydrogenase family trd_1827 PF01895 PhoU domain trd_1828 PF00005 ABC transporter trd_1829 PF00005 ABC transporter trd_1830 PF00528 Binding-protein-dependent transport system inner membrane component trd_1831 PF00528 Binding-protein-dependent transport system inner membrane component trd_1832 PF12849 PBP superfamily domain trd_1833 PF00072 Response regulator receiver domain trd_1833 PF00486 Transcriptional regulatory protein, C terminal trd_1836 PF13302 Acetyltransferase (GNAT) domain trd_1839 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1840 PF00528 Binding-protein-dependent transport system inner membrane component trd_1840 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_1841 PF00528 Binding-protein-dependent transport system inner membrane component trd_1842 PF01467 Cytidylyltransferase-like trd_1842 PF00294 pfkB family carbohydrate kinase trd_1843 PF03023 Lipid II flippase MurJ trd_1845 PF07969 Amidohydrolase family trd_1847 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1847 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_1848 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_1848 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily trd_1851 PF05343 M42 glutamyl aminopeptidase trd_1852 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain trd_1852 PF01842 ACT domain trd_1852 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain trd_1854 PF02325 YGGT family trd_1857 PF06107 Bacterial protein of unknown function (DUF951) trd_1859 PF07690 Major Facilitator Superfamily trd_1861 PF00528 Binding-protein-dependent transport system inner membrane component trd_1862 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1863 PF07503 HypF finger trd_1863 PF01300 Telomere recombination trd_1863 PF17788 HypF Kae1-like domain trd_1863 PF00708 Acylphosphatase trd_1865 PF13580 SIS domain trd_1866 PF00586 AIR synthase related protein, N-terminal domain trd_1866 PF02769 AIR synthase related protein, C-terminal domain trd_1867 PF01924 Hydrogenase formation hypA family trd_1869 PF01455 HupF/HypC family trd_1870 PF02492 CobW/HypB/UreG, nucleotide-binding domain trd_1871 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA trd_1877 PF00374 Nickel-dependent hydrogenase trd_1878 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit trd_1878 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal trd_1879 PF12072 Domain of unknown function (DUF3552) trd_1879 PF00013 KH domain trd_1879 PF01966 HD domain trd_1881 PF00498 FHA domain trd_1881 PF00005 ABC transporter trd_1881 PF01061 ABC-2 type transporter trd_1884 PF01212 Beta-eliminating lyase trd_1888 PF13419 Haloacid dehalogenase-like hydrolase trd_1889 PF01329 Pterin 4 alpha carbinolamine dehydratase trd_1890 PF00749 tRNA synthetases class I (E and Q), catalytic domain trd_1892 PF13439 Glycosyltransferase Family 4 trd_1894 PF00291 Pyridoxal-phosphate dependent enzyme trd_1895 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain trd_1895 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain trd_1895 PF06827 Zinc finger found in FPG and IleRS trd_1896 PF01230 HIT domain trd_1902 PF02585 GlcNAc-PI de-N-acetylase trd_1904 PF02416 mttA/Hcf106 family trd_1906 PF00106 short chain dehydrogenase trd_1907 PF00990 Diguanylate cyclase, GGDEF domain trd_1907 PF13426 PAS domain trd_1907 PF00563 EAL domain trd_1909 PF01406 tRNA synthetases class I (C) catalytic domain trd_1909 PF09190 DALR domain trd_1911 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_1924 PF03776 Septum formation topological specificity factor MinE trd_1925 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain trd_1926 PF03775 Septum formation inhibitor MinC, C-terminal domain trd_1927 PF03717 Penicillin-binding Protein dimerisation domain trd_1927 PF00905 Penicillin binding protein transpeptidase domain trd_1930 PF00128 Alpha amylase, catalytic domain trd_1930 PF11896 Domain of unknown function (DUF3416) trd_1931 PF16657 Maltogenic Amylase, C-terminal domain trd_1931 PF00128 Alpha amylase, catalytic domain trd_1932 PF02446 4-alpha-glucanotransferase trd_1933 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) trd_1933 PF02806 Alpha amylase, C-terminal all-beta domain trd_1933 PF00128 Alpha amylase, catalytic domain trd_1934 PF07685 CobB/CobQ-like glutamine amidotransferase domain trd_1936 PF08353 Domain of unknown function (DUF1727) trd_1936 PF08245 Mur ligase middle domain trd_1939 PF01464 Transglycosylase SLT domain trd_1939 PF10145 Phage-related minor tail protein trd_1939 PF01551 Peptidase family M23 trd_1940 PF00781 Diacylglycerol kinase catalytic domain trd_1942 PF00107 Zinc-binding dehydrogenase trd_1942 PF08240 Alcohol dehydrogenase GroES-like domain trd_1943 PF07969 Amidohydrolase family trd_1944 PF03737 Aldolase/RraA trd_1945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_1945 PF13378 Enolase C-terminal domain-like trd_1948 PF01370 NAD dependent epimerase/dehydratase family trd_1950 PF00528 Binding-protein-dependent transport system inner membrane component trd_1951 PF00528 Binding-protein-dependent transport system inner membrane component trd_1952 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_1954 PF08352 Oligopeptide/dipeptide transporter, C-terminal region trd_1954 PF00005 ABC transporter trd_1955 PF00005 ABC transporter trd_1955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region trd_1956 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_1956 PF13378 Enolase C-terminal domain-like trd_1957 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_1957 PF13378 Enolase C-terminal domain-like trd_1958 PF13378 Enolase C-terminal domain-like trd_1958 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_1960 PF03734 L,D-transpeptidase catalytic domain trd_1960 PF17964 Bacterial Ig domain trd_1961 PF01551 Peptidase family M23 trd_1961 PF01476 LysM domain trd_1963 PF13567 Domain of unknown function (DUF4131) trd_1963 PF03772 Competence protein trd_1963 PF00753 Metallo-beta-lactamase superfamily trd_1965 PF13439 Glycosyltransferase Family 4 trd_1968 PF00912 Transglycosylase trd_1968 PF00905 Penicillin binding protein transpeptidase domain trd_1971 PF01266 FAD dependent oxidoreductase trd_1973 PF13247 4Fe-4S dicluster domain trd_1973 PF12800 4Fe-4S binding domain trd_1973 PF09163 Formate dehydrogenase N, transmembrane trd_1976 PF00582 Universal stress protein family trd_1982 PF00924 Mechanosensitive ion channel trd_A0002 PF00171 Aldehyde dehydrogenase family trd_A0004 PF01594 AI-2E family transporter trd_A0007 PF01243 Pyridoxamine 5'-phosphate oxidase trd_A0007 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region trd_A0008 PF01230 HIT domain trd_A0009 PF00857 Isochorismatase family trd_A0011 PF00144 Beta-lactamase trd_A0014 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase trd_A0014 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase trd_A0015 PF00881 Nitroreductase family trd_A0017 PF13335 Magnesium chelatase, subunit ChlI C-terminal trd_A0017 PF01078 Magnesium chelatase, subunit ChlI trd_A0023 PF02608 ABC transporter substrate-binding protein PnrA-like trd_A0028 PF16973 Flagellar motor switch protein FliN N-terminal trd_A0028 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term trd_A0029 PF02154 Flagellar motor switch protein FliM trd_A0029 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term trd_A0031 PF13677 Membrane MotB of proton-channel complex MotA/MotB trd_A0031 PF00691 OmpA family trd_A0032 PF01618 MotA/TolQ/ExbB proton channel family trd_A0034 PF00813 FliP family trd_A0035 PF01313 Bacterial export proteins, family 3 trd_A0036 PF01311 Bacterial export proteins, family 1 trd_A0037 PF01312 FlhB HrpN YscU SpaS Family trd_A0038 PF00771 FHIPEP family trd_A0039 PF00448 SRP54-type protein, GTPase domain trd_A0041 PF04539 Sigma-70 region 3 trd_A0041 PF04542 Sigma-70 region 2 trd_A0041 PF04545 Sigma-70, region 4 trd_A0044 PF06429 Flagellar basal body rod FlgEFG protein C-terminal trd_A0044 PF00460 Flagella basal body rod protein trd_A0045 PF00460 Flagella basal body rod protein trd_A0045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal trd_A0048 PF00460 Flagella basal body rod protein trd_A0048 PF06429 Flagellar basal body rod FlgEFG protein C-terminal trd_A0049 PF00669 Bacterial flagellin N-terminal helical region trd_A0049 PF00700 Bacterial flagellin C-terminal helical region trd_A0050 PF02623 FliW protein trd_A0051 PF02599 Global regulator protein family trd_A0054 PF09297 NADH pyrophosphatase zinc ribbon domain trd_A0054 PF00293 NUDIX domain trd_A0056 PF04879 Molybdopterin oxidoreductase Fe4S4 domain trd_A0056 PF00384 Molybdopterin oxidoreductase trd_A0056 PF01568 Molydopterin dinucleotide binding domain trd_A0057 PF01568 Molydopterin dinucleotide binding domain trd_A0057 PF04879 Molybdopterin oxidoreductase Fe4S4 domain trd_A0057 PF00384 Molybdopterin oxidoreductase trd_A0058 PF12800 4Fe-4S binding domain trd_A0058 PF13247 4Fe-4S dicluster domain trd_A0063 PF03773 Predicted permease trd_A0068 PF01799 [2Fe-2S] binding domain trd_A0068 PF00111 2Fe-2S iron-sulfur cluster binding domain trd_A0069 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0069 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_A0070 PF00550 Phosphopantetheine attachment site trd_A0070 PF00668 Condensation domain trd_A0070 PF00975 Thioesterase domain trd_A0070 PF13193 AMP-binding enzyme C-terminal domain trd_A0070 PF00501 AMP-binding enzyme trd_A0070 PF00391 PEP-utilising enzyme, mobile domain trd_A0070 PF08241 Methyltransferase domain trd_A0072 PF01557 Fumarylacetoacetate (FAA) hydrolase family trd_A0075 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain trd_A0075 PF00391 PEP-utilising enzyme, mobile domain trd_A0077 PF07729 FCD domain trd_A0077 PF00392 Bacterial regulatory proteins, gntR family trd_A0078 PF09370 Phosphoenolpyruvate hydrolase-like trd_A0080 PF00005 ABC transporter trd_A0081 PF12399 Branched-chain amino acid ATP-binding cassette transporter trd_A0081 PF00005 ABC transporter trd_A0084 PF02653 Branched-chain amino acid transport system / permease component trd_A0089 PF00005 ABC transporter trd_A0091 PF00005 ABC transporter trd_A0091 PF13732 Domain of unknown function (DUF4162) trd_A0097 PF13193 AMP-binding enzyme C-terminal domain trd_A0097 PF00501 AMP-binding enzyme trd_A0098 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain trd_A0098 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain trd_A0099 PF00378 Enoyl-CoA hydratase/isomerase trd_A0100 PF01522 Polysaccharide deacetylase trd_A0100 PF14883 Hypothetical glycosyl hydrolase family 13 trd_A0109 PF00266 Aminotransferase class-V trd_A0117 PF13180 PDZ domain trd_A0121 PF01546 Peptidase family M20/M25/M40 trd_A0121 PF07687 Peptidase dimerisation domain trd_A0132 PF04542 Sigma-70 region 2 trd_A0132 PF04545 Sigma-70, region 4 trd_A0141 PF13462 Thioredoxin trd_A0150 PF02628 Cytochrome oxidase assembly protein trd_A0151 PF03193 RsgA GTPase trd_A0153 PF07729 FCD domain trd_A0153 PF00392 Bacterial regulatory proteins, gntR family trd_A0155 PF00196 Bacterial regulatory proteins, luxR family trd_A0155 PF00072 Response regulator receiver domain trd_A0156 PF00842 Alanine racemase, C-terminal domain trd_A0156 PF01168 Alanine racemase, N-terminal domain trd_A0158 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_A0158 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_A0158 PF00205 Thiamine pyrophosphate enzyme, central domain trd_A0162 PF05544 Proline racemase trd_A0165 PF08443 RimK-like ATP-grasp domain trd_A0171 PF00005 ABC transporter trd_A0175 PF00285 Citrate synthase, C-terminal domain trd_A0176 PF03972 MmgE/PrpD family trd_A0182 PF01475 Ferric uptake regulator family trd_A0183 PF01297 Zinc-uptake complex component A periplasmic trd_A0184 PF00005 ABC transporter trd_A0185 PF00950 ABC 3 transport family trd_A0192 PF00005 ABC transporter trd_A0194 PF00116 Cytochrome C oxidase subunit II, periplasmic domain trd_A0194 PF18764 Nitrous oxide reductase propeller repeat trd_A0194 PF18793 Nitrous oxide reductase propeller repeat 2 trd_A0197 PF03167 Uracil DNA glycosylase superfamily trd_A0200 PF00291 Pyridoxal-phosphate dependent enzyme trd_A0201 PF01545 Cation efflux family trd_A0202 PF13183 4Fe-4S dicluster domain trd_A0202 PF02589 LUD domain trd_A0202 PF11870 Domain of unknown function (DUF3390) trd_A0205 PF13556 PucR C-terminal helix-turn-helix domain trd_A0205 PF07905 Purine catabolism regulatory protein-like family trd_A0205 PF17853 GGDEF-like domain trd_A0208 PF00700 Bacterial flagellin C-terminal helical region trd_A0208 PF00669 Bacterial flagellin N-terminal helical region trd_A0210 PF00072 Response regulator receiver domain trd_A0210 PF01339 CheB methylesterase trd_A0211 PF00072 Response regulator receiver domain trd_A0215 PF07194 P2 response regulator binding domain trd_A0215 PF01627 Hpt domain trd_A0215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_A0215 PF02895 Signal transducing histidine kinase, homodimeric domain trd_A0215 PF01584 CheW-like domain trd_A0217 PF00672 HAMP domain trd_A0217 PF02743 Cache domain trd_A0217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain trd_A0220 PF07196 Flagellin hook IN motif trd_A0220 PF02465 Flagellar hook-associated protein 2 N-terminus trd_A0220 PF07195 Flagellar hook-associated protein 2 C-terminus trd_A0221 PF02561 Flagellar protein FliS trd_A0228 PF07732 Multicopper oxidase trd_A0228 PF07731 Multicopper oxidase trd_A0228 PF00394 Multicopper oxidase trd_A0233 PF12727 PBP superfamily domain trd_A0233 PF12728 Helix-turn-helix domain trd_A0235 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0239 PF01566 Natural resistance-associated macrophage protein trd_A0242 PF00149 Calcineurin-like phosphoesterase trd_A0249 PF00005 ABC transporter trd_A0251 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0253 PF00156 Phosphoribosyl transferase domain trd_A0255 PF02875 Mur ligase family, glutamate ligase domain trd_A0255 PF08245 Mur ligase middle domain trd_A0256 PF03816 Cell envelope-related transcriptional attenuator domain trd_A0258 PF00561 alpha/beta hydrolase fold trd_A0259 PF00561 alpha/beta hydrolase fold trd_A0261 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_A0261 PF16582 Middle domain of thiamine pyrophosphate trd_A0261 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_A0262 PF00425 chorismate binding enzyme trd_A0263 PF00440 Bacterial regulatory proteins, tetR family trd_A0265 PF03009 Glycerophosphoryl diester phosphodiesterase family trd_A0266 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0267 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0268 PF01547 Bacterial extracellular solute-binding protein trd_A0281 PF00176 SNF2 family N-terminal domain trd_A0281 PF00271 Helicase conserved C-terminal domain trd_A0294 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain trd_A0295 PF00672 HAMP domain trd_A0295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain trd_A0299 PF00860 Permease family trd_A0302 PF16916 Dimerisation domain of Zinc Transporter trd_A0302 PF01545 Cation efflux family trd_A0304 PF00378 Enoyl-CoA hydratase/isomerase trd_A0305 PF01040 UbiA prenyltransferase family trd_A0306 PF13378 Enolase C-terminal domain-like trd_A0306 PF18374 Enolase N-terminal domain-like trd_A0308 PF13193 AMP-binding enzyme C-terminal domain trd_A0308 PF00501 AMP-binding enzyme trd_A0309 PF00390 Malic enzyme, N-terminal domain trd_A0309 PF03949 Malic enzyme, NAD binding domain trd_A0310 PF00689 Cation transporting ATPase, C-terminus trd_A0310 PF00690 Cation transporter/ATPase, N-terminus trd_A0311 PF03448 MgtE intracellular N domain trd_A0311 PF01769 Divalent cation transporter trd_A0311 PF00571 CBS domain trd_A0315 PF13180 PDZ domain trd_A0317 PF00768 D-alanyl-D-alanine carboxypeptidase trd_A0320 PF13180 PDZ domain trd_A0321 PF04542 Sigma-70 region 2 trd_A0321 PF04545 Sigma-70, region 4 trd_A0323 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_A0324 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0324 PF12911 N-terminal TM domain of oligopeptide transport permease C trd_A0325 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0326 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_A0328 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_A0328 PF00205 Thiamine pyrophosphate enzyme, central domain trd_A0328 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_A0329 PF00005 ABC transporter trd_A0330 PF00501 AMP-binding enzyme trd_A0330 PF13193 AMP-binding enzyme C-terminal domain trd_A0333 PF00378 Enoyl-CoA hydratase/isomerase trd_A0335 PF01979 Amidohydrolase family trd_A0337 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_A0337 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0338 PF00106 short chain dehydrogenase trd_A0340 PF00866 Ring hydroxylating beta subunit trd_A0341 PF00848 Ring hydroxylating alpha subunit (catalytic domain) trd_A0341 PF00355 Rieske [2Fe-2S] domain trd_A0342 PF00701 Dihydrodipicolinate synthetase family trd_A0344 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_A0345 PF02386 Cation transport protein trd_A0346 PF02386 Cation transport protein trd_A0347 PF02080 TrkA-C domain trd_A0347 PF02254 TrkA-N domain trd_A0348 PF01557 Fumarylacetoacetate (FAA) hydrolase family trd_A0350 PF00571 CBS domain trd_A0350 PF03471 Transporter associated domain trd_A0350 PF01595 Cyclin M transmembrane N-terminal domain trd_A0355 PF00005 ABC transporter trd_A0356 PF16901 C-terminal domain of alpha-glycerophosphate oxidase trd_A0356 PF01266 FAD dependent oxidoreductase trd_A0358 PF00370 FGGY family of carbohydrate kinases, N-terminal domain trd_A0358 PF02782 FGGY family of carbohydrate kinases, C-terminal domain trd_A0362 PF00202 Aminotransferase class-III trd_A0364 PF07690 Major Facilitator Superfamily trd_A0366 PF00579 tRNA synthetases class I (W and Y) trd_A0369 PF03334 Na+/H+ antiporter subunit trd_A0370 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) trd_A0371 PF01899 Na+/H+ ion antiporter subunit trd_A0374 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter trd_A0375 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus trd_A0375 PF00361 Proton-conducting membrane transporter trd_A0375 PF13244 Domain of unknown function (DUF4040) trd_A0376 PF03641 Possible lysine decarboxylase trd_A0380 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_A0380 PF00403 Heavy-metal-associated domain trd_A0380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain trd_A0386 PF00107 Zinc-binding dehydrogenase trd_A0386 PF08240 Alcohol dehydrogenase GroES-like domain trd_A0390 PF00270 DEAD/DEAH box helicase trd_A0390 PF09382 RQC domain trd_A0390 PF16124 RecQ zinc-binding trd_A0390 PF00271 Helicase conserved C-terminal domain trd_A0390 PF00570 HRDC domain trd_A0393 PF09125 Cytochrome C oxidase subunit II, transmembrane trd_A0393 PF00116 Cytochrome C oxidase subunit II, periplasmic domain trd_A0395 PF01040 UbiA prenyltransferase family trd_A0395 PF02628 Cytochrome oxidase assembly protein trd_A0400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_A0400 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0402 PF08543 Phosphomethylpyrimidine kinase trd_A0407 PF01979 Amidohydrolase family trd_A0412 PF13654 AAA domain trd_A0412 PF05362 Lon protease (S16) C-terminal proteolytic domain trd_A0414 PF00696 Amino acid kinase family trd_A0414 PF13840 ACT domain trd_A0414 PF01842 ACT domain trd_A0414 PF00742 Homoserine dehydrogenase trd_A0414 PF03447 Homoserine dehydrogenase, NAD binding domain trd_A0415 PF04542 Sigma-70 region 2 trd_A0415 PF04545 Sigma-70, region 4 trd_A0421 PF02568 Thiamine biosynthesis protein (ThiI) trd_A0421 PF02926 THUMP domain trd_A0425 PF01145 SPFH domain / Band 7 family trd_A0425 PF15975 Flotillin trd_A0428 PF00324 Amino acid permease trd_A0430 PF00120 Glutamine synthetase, catalytic domain trd_A0430 PF03951 Glutamine synthetase, beta-Grasp domain trd_A0436 PF00557 Metallopeptidase family M24 trd_A0437 PF00892 EamA-like transporter family trd_A0439 PF00127 Copper binding proteins, plastocyanin/azurin family trd_A0442 PF01434 Peptidase family M41 trd_A0442 PF00004 ATPase family associated with various cellular activities (AAA) trd_A0442 PF17862 AAA+ lid domain trd_A0442 PF06480 FtsH Extracellular trd_A0446 PF00698 Acyl transferase domain trd_A0447 PF02801 Beta-ketoacyl synthase, C-terminal domain trd_A0447 PF00109 Beta-ketoacyl synthase, N-terminal domain trd_A0448 PF01119 DNA mismatch repair protein, C-terminal domain trd_A0448 PF08676 MutL C terminal dimerisation domain trd_A0449 PF00488 MutS domain V trd_A0449 PF05190 MutS family domain IV trd_A0449 PF05192 MutS domain III trd_A0449 PF05188 MutS domain II trd_A0449 PF01624 MutS domain I trd_A0452 PF00155 Aminotransferase class I and II trd_A0454 PF00115 Cytochrome C and Quinol oxidase polypeptide I trd_A0456 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) trd_A0457 PF01593 Flavin containing amine oxidoreductase trd_A0458 PF13344 Haloacid dehalogenase-like hydrolase trd_A0460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase trd_A0460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase trd_A0461 PF01425 Amidase trd_A0468 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0469 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0470 PF01547 Bacterial extracellular solute-binding protein trd_A0471 PF00392 Bacterial regulatory proteins, gntR family trd_A0471 PF07729 FCD domain trd_A0473 PF18211 Csm1 subunit domain B trd_A0475 PF01557 Fumarylacetoacetate (FAA) hydrolase family trd_A0479 PF00689 Cation transporting ATPase, C-terminus trd_A0482 PF01238 Phosphomannose isomerase type I trd_A0485 PF00999 Sodium/hydrogen exchanger family trd_A0486 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain trd_A0486 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_A0488 PF04542 Sigma-70 region 2 trd_A0488 PF08281 Sigma-70, region 4 trd_A0503 PF00285 Citrate synthase, C-terminal domain trd_A0508 PF03099 Biotin/lipoate A/B protein ligase family trd_A0511 PF00795 Carbon-nitrogen hydrolase trd_A0514 PF05378 Hydantoinase/oxoprolinase N-terminal region trd_A0514 PF01968 Hydantoinase/oxoprolinase trd_A0517 PF04474 Protein of unknown function (DUF554) trd_A0520 PF01565 FAD binding domain trd_A0520 PF08031 Berberine and berberine like trd_A0521 PF01112 Asparaginase trd_A0525 PF02811 PHP domain trd_A0525 PF07733 Bacterial DNA polymerase III alpha NTPase domain trd_A0525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain trd_A0525 PF14579 Helix-hairpin-helix motif trd_A0526 PF00817 impB/mucB/samB family trd_A0526 PF11799 impB/mucB/samB family C-terminal domain trd_A0527 PF00154 recA bacterial DNA recombination protein trd_A0532 PF00005 ABC transporter trd_A0533 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0534 PF01547 Bacterial extracellular solute-binding protein trd_A0539 PF08240 Alcohol dehydrogenase GroES-like domain trd_A0539 PF00107 Zinc-binding dehydrogenase trd_A0542 PF00857 Isochorismatase family trd_A0543 PF00682 HMGL-like trd_A0544 PF01243 Pyridoxamine 5'-phosphate oxidase trd_A0544 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region trd_A0545 PF00582 Universal stress protein family trd_A0546 PF03069 Acetamidase/Formamidase family trd_A0547 PF02566 OsmC-like protein trd_A0548 PF01996 F420-0:Gamma-glutamyl ligase trd_A0548 PF00881 Nitroreductase family trd_A0550 PF12697 Alpha/beta hydrolase family trd_A0561 PF05193 Peptidase M16 inactive domain trd_A0561 PF00675 Insulinase (Peptidase family M16) trd_A0562 PF00694 Aconitase C-terminal domain trd_A0562 PF00330 Aconitase family (aconitate hydratase) trd_A0563 PF02625 XdhC and CoxI family trd_A0563 PF13478 XdhC Rossmann domain trd_A0564 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_A0564 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0565 PF00111 2Fe-2S iron-sulfur cluster binding domain trd_A0565 PF01799 [2Fe-2S] binding domain trd_A0566 PF03450 CO dehydrogenase flavoprotein C-terminal domain trd_A0566 PF00941 FAD binding domain in molybdopterin dehydrogenase trd_A0567 PF00326 Prolyl oligopeptidase family trd_A0567 PF07676 WD40-like Beta Propeller Repeat trd_A0568 PF12804 MobA-like NTP transferase domain trd_A0569 PF00072 Response regulator receiver domain trd_A0569 PF00196 Bacterial regulatory proteins, luxR family trd_A0570 PF13185 GAF domain trd_A0570 PF13492 GAF domain trd_A0570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_A0570 PF07730 Histidine kinase trd_A0573 PF00557 Metallopeptidase family M24 trd_A0573 PF01321 Creatinase/Prolidase N-terminal domain trd_A0574 PF00563 EAL domain trd_A0574 PF00990 Diguanylate cyclase, GGDEF domain trd_A0574 PF13185 GAF domain trd_A0580 PF02645 Uncharacterised protein, DegV family COG1307 trd_A0581 PF02660 Glycerol-3-phosphate acyltransferase trd_A0582 PF13684 Dihydroxyacetone kinase family trd_A0582 PF02734 DAK2 domain trd_A0588 PF02653 Branched-chain amino acid transport system / permease component trd_A0589 PF02653 Branched-chain amino acid transport system / permease component trd_A0591 PF13378 Enolase C-terminal domain-like trd_A0591 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_A0592 PF00005 ABC transporter trd_A0594 PF09339 IclR helix-turn-helix domain trd_A0594 PF01614 Bacterial transcriptional regulator trd_A0597 PF01966 HD domain trd_A0598 PF01619 Proline dehydrogenase trd_A0602 PF13190 PDGLE domain trd_A0602 PF01891 Cobalt uptake substrate-specific transmembrane region trd_A0603 PF02361 Cobalt transport protein trd_A0604 PF00005 ABC transporter trd_A0605 PF04542 Sigma-70 region 2 trd_A0605 PF04545 Sigma-70, region 4 trd_A0605 PF00140 Sigma-70 factor, region 1.2 trd_A0605 PF04539 Sigma-70 region 3 trd_A0606 PF00595 PDZ domain trd_A0607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase trd_A0607 PF00512 His Kinase A (phospho-acceptor) domain trd_A0607 PF00672 HAMP domain trd_A0608 PF00072 Response regulator receiver domain trd_A0608 PF00486 Transcriptional regulatory protein, C terminal trd_A0609 PF04264 YceI-like domain trd_A0611 PF04542 Sigma-70 region 2 trd_A0611 PF04545 Sigma-70, region 4 trd_A0613 PF02073 Thermophilic metalloprotease (M29) trd_A0619 PF08734 GYD domain trd_A0621 PF07690 Major Facilitator Superfamily trd_A0622 PF01180 Dihydroorotate dehydrogenase trd_A0624 PF13419 Haloacid dehalogenase-like hydrolase trd_A0625 PF01139 tRNA-splicing ligase RtcB trd_A0628 PF00384 Molybdopterin oxidoreductase trd_A0628 PF04879 Molybdopterin oxidoreductase Fe4S4 domain trd_A0628 PF01568 Molydopterin dinucleotide binding domain trd_A0629 PF13247 4Fe-4S dicluster domain trd_A0630 PF02583 Metal-sensitive transcriptional repressor trd_A0634 PF13458 Periplasmic binding protein trd_A0635 PF02653 Branched-chain amino acid transport system / permease component trd_A0636 PF11862 Domain of unknown function (DUF3382) trd_A0636 PF02653 Branched-chain amino acid transport system / permease component trd_A0637 PF00005 ABC transporter trd_A0637 PF12399 Branched-chain amino acid ATP-binding cassette transporter trd_A0638 PF00005 ABC transporter trd_A0639 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase trd_A0639 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase trd_A0642 PF06429 Flagellar basal body rod FlgEFG protein C-terminal trd_A0642 PF00460 Flagella basal body rod protein trd_A0642 PF07559 Flagellar basal body protein FlaE trd_A0645 PF00460 Flagella basal body rod protein trd_A0646 PF01464 Transglycosylase SLT domain trd_A0648 PF18269 T3SS EscN ATPase C-terminal domain trd_A0648 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain trd_A0648 PF02874 ATP synthase alpha/beta family, beta-barrel domain trd_A0650 PF01706 FliG C-terminal domain trd_A0650 PF14841 FliG middle domain trd_A0650 PF14842 FliG N-terminal domain trd_A0651 PF08345 Flagellar M-ring protein C-terminal trd_A0651 PF01514 Secretory protein of YscJ/FliF family trd_A0652 PF02049 Flagellar hook-basal body complex protein FliE trd_A0653 PF06429 Flagellar basal body rod FlgEFG protein C-terminal trd_A0653 PF00460 Flagella basal body rod protein trd_A0657 PF07687 Peptidase dimerisation domain trd_A0657 PF01546 Peptidase family M20/M25/M40 trd_A0658 PF07995 Glucose / Sorbosone dehydrogenase trd_A0659 PF00892 EamA-like transporter family trd_A0664 PF09335 SNARE associated Golgi protein trd_A0665 PF00120 Glutamine synthetase, catalytic domain trd_A0665 PF03951 Glutamine synthetase, beta-Grasp domain trd_A0672 PF17863 AAA lid domain trd_A0672 PF07726 ATPase family associated with various cellular activities (AAA) trd_A0675 PF01053 Cys/Met metabolism PLP-dependent enzyme trd_A0676 PF00296 Luciferase-like monooxygenase trd_A0681 PF02146 Sir2 family trd_A0682 PF01266 FAD dependent oxidoreductase trd_A0691 PF07690 Major Facilitator Superfamily trd_A0692 PF00082 Subtilase family trd_A0699 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle trd_A0700 PF00528 Binding-protein-dependent transport system inner membrane component trd_A0705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold trd_A0705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain trd_A0706 PF01380 SIS domain trd_A0707 PF01979 Amidohydrolase family trd_A0708 PF00144 Beta-lactamase trd_A0709 PF03702 Anhydro-N-acetylmuramic acid kinase trd_A0712 PF01869 BadF/BadG/BcrA/BcrD ATPase family trd_A0713 PF13580 SIS domain trd_A0715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain trd_A0715 PF13378 Enolase C-terminal domain-like trd_A0719 PF00271 Helicase conserved C-terminal domain trd_A0719 PF09369 Domain of unknown function (DUF1998) trd_A0719 PF00270 DEAD/DEAH box helicase trd_A0729 PF07690 Major Facilitator Superfamily trd_A0730 PF00565 Staphylococcal nuclease homologue trd_A0732 PF05368 NmrA-like family trd_A0733 PF05368 NmrA-like family trd_A0735 PF00563 EAL domain trd_A0735 PF08668 HDOD domain trd_A0736 PF00561 alpha/beta hydrolase fold trd_A0737 PF08668 HDOD domain trd_A0737 PF00563 EAL domain trd_A0738 PF01613 Flavin reductase like domain trd_A0739 PF00578 AhpC/TSA family trd_A0740 PF01266 FAD dependent oxidoreductase trd_A0744 PF02040 Arsenical pump membrane protein trd_A0748 PF00491 Arginase family trd_A0750 PF01037 Lrp/AsnC ligand binding domain trd_A0750 PF13404 AsnC-type helix-turn-helix domain trd_A0752 PF00202 Aminotransferase class-III trd_A0754 PF00107 Zinc-binding dehydrogenase trd_A0754 PF08240 Alcohol dehydrogenase GroES-like domain trd_A0764 PF13614 AAA domain trd_A0765 PF17762 HTH domain found in ParB protein trd_A0765 PF02195 ParB-like nuclease domain trd_A0767 PF02632 BioY family trd_A0768 PF03746 LamB/YcsF family trd_A0769 PF02626 Carboxyltransferase domain, subdomain A and B trd_A0770 PF02682 Carboxyltransferase domain, subdomain C and D trd_A0772 PF02653 Branched-chain amino acid transport system / permease component trd_A0773 PF00005 ABC transporter trd_A0775 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0775 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase trd_A0776 PF00111 2Fe-2S iron-sulfur cluster binding domain trd_A0776 PF01799 [2Fe-2S] binding domain trd_A0777 PF03450 CO dehydrogenase flavoprotein C-terminal domain trd_A0777 PF00941 FAD binding domain in molybdopterin dehydrogenase trd_A0778 PF00289 Biotin carboxylase, N-terminal domain trd_A0778 PF02785 Biotin carboxylase C-terminal domain trd_A0778 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain trd_A0779 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain trd_A0779 PF00391 PEP-utilising enzyme, mobile domain trd_A0780 PF00668 Condensation domain trd_A0780 PF08241 Methyltransferase domain trd_A0780 PF00501 AMP-binding enzyme trd_A0780 PF00550 Phosphopantetheine attachment site trd_A0780 PF00975 Thioesterase domain trd_A0780 PF13193 AMP-binding enzyme C-terminal domain trd_A0780 PF00391 PEP-utilising enzyme, mobile domain trd_A0784 PF02548 Ketopantoate hydroxymethyltransferase trd_A0785 PF02569 Pantoate-beta-alanine ligase trd_A0786 PF03793 PASTA domain trd_A0786 PF00069 Protein kinase domain trd_A0787 PF01790 Prolipoprotein diacylglyceryl transferase trd_A0788 PF00501 AMP-binding enzyme trd_A0788 PF13193 AMP-binding enzyme C-terminal domain trd_A0791 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_A0791 PF00205 Thiamine pyrophosphate enzyme, central domain trd_A0791 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_A0792 PF01571 Aminomethyltransferase folate-binding domain trd_A0797 PF01451 Low molecular weight phosphotyrosine protein phosphatase trd_A0798 PF00795 Carbon-nitrogen hydrolase trd_A0803 PF00892 EamA-like transporter family trd_A0806 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain trd_A0806 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain trd_A0806 PF00205 Thiamine pyrophosphate enzyme, central domain trd_A0809 PF00005 ABC transporter trd_A0811 PF00919 Uncharacterized protein family UPF0004 trd_A0811 PF18693 TRAM domain trd_A0811 PF04055 Radical SAM superfamily trd_A0812 PF00155 Aminotransferase class I and II trd_A0815 PF01230 HIT domain trd_A0816 PF02397 Bacterial sugar transferase trd_A0819 PF00534 Glycosyl transferases group 1 trd_A0819 PF08323 Starch synthase catalytic domain trd_A0821 PF13614 AAA domain trd_A0826 PF00378 Enoyl-CoA hydratase/isomerase trd_A0827 PF01053 Cys/Met metabolism PLP-dependent enzyme trd_A0828 PF13193 AMP-binding enzyme C-terminal domain trd_A0828 PF00501 AMP-binding enzyme trd_A0829 PF00083 Sugar (and other) transporter trd_A0829 PF07690 Major Facilitator Superfamily trd_A0831 PF01022 Bacterial regulatory protein, arsR family trd_A0834 PF16123 Hydroxyacylglutathione hydrolase C-terminus trd_A0834 PF00753 Metallo-beta-lactamase superfamily trd_A0835 PF00581 Rhodanese-like domain trd_A0836 PF07992 Pyridine nucleotide-disulphide oxidoreductase trd_A0836 PF14759 Reductase C-terminal trd_A0838 PF00355 Rieske [2Fe-2S] domain trd_A0840 PF04055 Radical SAM superfamily trd_A0840 PF13186 Iron-sulfur cluster-binding domain trd_A0843 PF00107 Zinc-binding dehydrogenase trd_A0843 PF08240 Alcohol dehydrogenase GroES-like domain trd_A0844 PF01070 FMN-dependent dehydrogenase trd_A0847 PF08240 Alcohol dehydrogenase GroES-like domain trd_A0847 PF00107 Zinc-binding dehydrogenase trd_A0851 PF01425 Amidase trd_A0852 PF00692 dUTPase trd_A0853 PF00294 pfkB family carbohydrate kinase trd_A0854 PF13419 Haloacid dehalogenase-like hydrolase trd_A0856 PF03807 NADP oxidoreductase coenzyme F420-dependent trd_A0856 PF14748 Pyrroline-5-carboxylate reductase dimerisation trd_A0857 PF02633 Creatinine amidohydrolase trd_A0859 PF00723 Glycosyl hydrolases family 15 trd_A0866 PF00764 Arginosuccinate synthase trd_A0868 PF14815 NUDIX domain trd_A0868 PF00730 HhH-GPD superfamily base excision DNA repair protein trd_A0868 PF00633 Helix-hairpin-helix motif trd_A0870 PF02618 YceG-like family trd_A0871 PF18317 Shikimate 5'-dehydrogenase C-terminal domain trd_A0871 PF08501 Shikimate dehydrogenase substrate binding domain trd_A0871 PF01488 Shikimate / quinate 5-dehydrogenase trd_A0873 PF04293 SpoVR like protein trd_A0874 PF04285 Protein of unknown function (DUF444) trd_A0875 PF08298 PrkA AAA domain trd_A0875 PF06798 PrkA serine protein kinase C-terminal domain trd_A0877 PF05343 M42 glutamyl aminopeptidase trd_A0881 PF02899 Phage integrase, N-terminal SAM-like domain trd_A0881 PF00589 Phage integrase family trd_A0888 PF00004 ATPase family associated with various cellular activities (AAA) trd_A0888 PF17862 AAA+ lid domain trd_A0888 PF01434 Peptidase family M41 trd_A0888 PF06480 FtsH Extracellular trd_A0892 PF01266 FAD dependent oxidoreductase trd_A0895 PF00155 Aminotransferase class I and II trd_A0898 PF01522 Polysaccharide deacetylase trd_A0899 PF04055 Radical SAM superfamily trd_A0900 PF04055 Radical SAM superfamily trd_A0908 PF08439 Oligopeptidase F trd_A0908 PF01432 Peptidase family M3 trd_A0909 PF01209 ubiE/COQ5 methyltransferase family trd_A0910 PF01161 Phosphatidylethanolamine-binding protein trd_A0915 PF16363 GDP-mannose 4,6 dehydratase trd_A0916 PF07729 FCD domain trd_A0916 PF00392 Bacterial regulatory proteins, gntR family trd_A0917 PF00701 Dihydrodipicolinate synthetase family trd_A0919 PF02332 Methane/Phenol/Toluene Hydroxylase trd_A0920 PF06234 Toluene-4-monooxygenase system protein B (TmoB) trd_A0924 PF00111 2Fe-2S iron-sulfur cluster binding domain trd_A0924 PF00970 Oxidoreductase FAD-binding domain trd_A0924 PF00175 Oxidoreductase NAD-binding domain trd_A0926 PF00106 short chain dehydrogenase trd_A0927 PF00561 alpha/beta hydrolase fold trd_A0928 PF08028 Acyl-CoA dehydrogenase, C-terminal domain trd_A0929 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal trd_A0929 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal trd_A0930 PF00561 alpha/beta hydrolase fold trd_A0931 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal trd_A0931 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal trd_A0935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily