trd_0005 SM00028 Tetratricopeptide repeats trd_0010 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family trd_0013 SM00382 ATPases associated with a variety of cellular activities trd_0020 SM00487 DEAD-like helicases superfamily trd_0020 SM00490 helicase superfamily c-terminal domain trd_0032 SM01400 trd_0032 trd_0033 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_0033 SM01091 Transporter associated domain trd_0042 SM00893 Electron transfer flavoprotein domain trd_0043 SM00893 Electron transfer flavoprotein domain trd_0048 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_0048 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) trd_0048 SM00091 PAS domain trd_0048 SM00267 diguanylate cyclase trd_0052 SM00422 helix_turn_helix, mercury resistance trd_0068 SM00864 Tubulin/FtsZ family, GTPase domain trd_0068 SM00865 Tubulin/FtsZ family, C-terminal domain trd_0075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_0082 SM00642 Alpha-amylase domain trd_0084 SM00487 DEAD-like helicases superfamily trd_0084 SM00490 helicase superfamily c-terminal domain trd_0085 SM00903 Flavin reductase like domain trd_0091 SM00937 trd_0091 trd_0100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_0117 SM00881 CoA binding domain trd_0129 SM00345 helix_turn_helix gluconate operon transcriptional repressor trd_0129 SM00895 trd_0129 trd_0141 SM00060 Fibronectin type 3 domain trd_0148 SM00893 Electron transfer flavoprotein domain trd_0149 SM00893 Electron transfer flavoprotein domain trd_0168 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_0169 SM00487 DEAD-like helicases superfamily trd_0169 SM00490 helicase superfamily c-terminal domain trd_0169 SM01142 trd_0169 trd_0184 SM00287 Bacterial SH3 domain homologues trd_0187 SM00382 ATPases associated with a variety of cellular activities trd_0188 SM00382 ATPases associated with a variety of cellular activities trd_0190 SM00382 ATPases associated with a variety of cellular activities trd_0202 SM00382 ATPases associated with a variety of cellular activities trd_0202 SM00393 Putative single-stranded nucleic acids-binding domain trd_0204 SM00493 trd_0204 trd_0205 SM00382 ATPases associated with a variety of cellular activities trd_0205 SM00843 trd_0205 trd_0206 SM00986 Uracil DNA glycosylase superfamily trd_0206 SM00987 UreE urease accessory protein, C-terminal domain trd_0207 SM00465 GIY-YIG type nucleases (URI domain) trd_0207 SM00479 trd_0207 trd_0210 SM00278 Helix-hairpin-helix DNA-binding motif class 1 trd_0210 SM00292 breast cancer carboxy-terminal domain trd_0210 SM00532 Ligase N family trd_0212 SM00851 MGS-like domain trd_0212 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain trd_0212 SM01209 trd_0212 trd_0213 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain trd_0219 SM00382 ATPases associated with a variety of cellular activities trd_0224 SM00382 ATPases associated with a variety of cellular activities trd_0227 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_0230 SM00331 Sigma factor PP2C-like phosphatases trd_0252 SM00346 helix_turn_helix isocitrate lyase regulation trd_0267 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_0267 SM00387 Histidine kinase-like ATPases trd_0267 SM00911 HWE histidine kinase trd_0272 SM00382 ATPases associated with a variety of cellular activities trd_0283 SM00849 Metallo-beta-lactamase superfamily trd_0284 SM00271 DnaJ molecular chaperone homology domain trd_0293 SM00382 ATPases associated with a variety of cellular activities trd_0295 SM00977 TilS substrate C-terminal domain trd_0302 SM00882 Coenzyme A transferase trd_0303 SM00882 Coenzyme A transferase trd_0314 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_0317 SM00382 ATPases associated with a variety of cellular activities trd_0328 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_0335 SM00479 trd_0335 trd_0335 SM00487 DEAD-like helicases superfamily trd_0335 SM00491 trd_0335 trd_0337 SM00357 Cold shock protein domain trd_0337 SM00382 ATPases associated with a variety of cellular activities trd_0337 SM00959 Rho termination factor, N-terminal domain trd_0354 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_0355 SM00028 Tetratricopeptide repeats trd_0365 SM00917 LeuA allosteric (dimerisation) domain trd_0366 SM00859 Semialdehyde dehydrogenase, NAD binding domain trd_0381 SM00382 ATPases associated with a variety of cellular activities trd_0385 SM00479 trd_0385 trd_0386 SM00849 Metallo-beta-lactamase superfamily trd_0405 SM00957 SecA DEAD-like domain trd_0405 SM00958 SecA preprotein cross-linking domain trd_0414 SM01130 trd_0414 trd_0417 SM00873 B3/4 domain trd_0421 SM00400 zinc finger trd_0421 SM00493 trd_0421 trd_0423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_0427 SM00278 Helix-hairpin-helix DNA-binding motif class 1 trd_0427 SM00465 GIY-YIG type nucleases (URI domain) trd_0432 SM00382 ATPases associated with a variety of cellular activities trd_0437 SM00363 S4 RNA-binding domain trd_0439 SM00563 Phosphate acyltransferases trd_0442 SM00422 helix_turn_helix, mercury resistance trd_0443 SM00382 ATPases associated with a variety of cellular activities trd_0443 SM01086 C-terminal, D2-small domain, of ClpB protein trd_0448 SM00829 Enoylreductase trd_0457 SM00881 CoA binding domain trd_0477 SM00861 Transketolase, pyrimidine binding domain trd_0480 SM00257 Lysin motif trd_0482 SM01002 Alanine dehydrogenase/PNT, C-terminal domain trd_0482 SM01003 Alanine dehydrogenase/PNT, N-terminal domain trd_0487 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. trd_0487 SM00245 tail specific protease trd_0515 SM00530 Helix-turn-helix XRE-family like proteins trd_0517 SM00450 Rhodanese Homology Domain trd_0523 SM00382 ATPases associated with a variety of cellular activities trd_0527 SM00825 Beta-ketoacyl synthase trd_0543 SM00836 DALR anticodon binding domain trd_0550 SM00942 Primase C terminal 1 (PriCT-1) trd_0550 SM00943 Bifunctional DNA primase/polymerase, N-terminal trd_0554 SM00382 ATPases associated with a variety of cellular activities trd_0562 SM00861 Transketolase, pyrimidine binding domain trd_0564 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_0564 SM00924 MgtE intracellular N domain trd_0565 SM00849 Metallo-beta-lactamase superfamily trd_0567 SM00278 Helix-hairpin-helix DNA-binding motif class 1 trd_0567 SM00481 DNA polymerase alpha chain like domain trd_0567 SM00483 DNA polymerase X family trd_0577 SM01092 CO dehydrogenase flavoprotein C-terminal domain trd_0579 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_0582 SM00829 Enoylreductase trd_0583 SM00831 Cation transporter/ATPase, N-terminus trd_0599 SM00382 ATPases associated with a variety of cellular activities trd_0609 SM00946 Prolyl-tRNA synthetase, C-terminal trd_0615 SM00240 Forkhead associated domain trd_0616 SM00240 Forkhead associated domain trd_0618 SM01152 trd_0618 trd_0623 SM00316 Ribosomal protein S1-like RNA-binding domain trd_0623 SM00322 K homology RNA-binding domain trd_0624 SM01387 trd_0624 trd_0632 SM00448 cheY-homologous receiver domain trd_0632 SM00862 Transcriptional regulatory protein, C terminal trd_0634 SM00331 Sigma factor PP2C-like phosphatases trd_0634 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain trd_0636 SM00278 Helix-hairpin-helix DNA-binding motif class 1 trd_0640 SM00873 B3/4 domain trd_0640 SM00874 tRNA synthetase B5 domain trd_0640 SM00896 Ferredoxin-fold anticodon binding domain trd_0642 SM01192 trd_0642 trd_0642 SM01193 trd_0642 trd_0646 SM01001 AIR carboxylase trd_0647 SM01329 trd_0647 trd_0652 SM00434 DNA Topoisomerase IV trd_0662 SM00788 Adenylosuccinate synthetase trd_0663 SM00271 DnaJ molecular chaperone homology domain trd_0668 SM00463 Small MutS-related domain trd_0668 SM00533 DNA-binding domain of DNA mismatch repair MUTS family trd_0668 SM00534 ATPase domain of DNA mismatch repair MUTS family trd_0670 SM00487 DEAD-like helicases superfamily trd_0670 SM00490 helicase superfamily c-terminal domain trd_0670 SM00982 trd_0670 trd_0670 SM01058 CarD-like/TRCF domain trd_0671 SM00278 Helix-hairpin-helix DNA-binding motif class 1 trd_0680 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. trd_0680 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. trd_0681 SM00649 Ribosomal protein L11/L12 trd_0686 SM00448 cheY-homologous receiver domain trd_0686 SM01012 trd_0686 trd_0690 SM00382 ATPases associated with a variety of cellular activities trd_0696 SM00967 RNA 2'-O ribose methyltransferase substrate binding trd_0697 SM00840 trd_0697 trd_0699 SM00834 Putative regulatory protein trd_0700 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs trd_0700 SM00474 3'-5' exonuclease trd_0700 SM00475 5'-3' exonuclease trd_0700 SM00482 DNA polymerase A domain trd_0701 SM00382 ATPases associated with a variety of cellular activities trd_0703 SM00460 Transglutaminase/protease-like homologues trd_0714 SM00480 DNA polymerase III beta subunit trd_0718 SM00382 ATPases associated with a variety of cellular activities trd_0726 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain trd_0729 SM00732 Likely ribonuclease with RNase H fold. trd_0736 SM00530 Helix-turn-helix XRE-family like proteins trd_0738 SM00481 DNA polymerase alpha chain like domain trd_0745 SM00998 Adenylosuccinate lyase C-terminus trd_0748 SM01211 trd_0748 trd_0754 SM00382 ATPases associated with a variety of cellular activities trd_0758 SM00834 Putative regulatory protein trd_0767 SM00829 Enoylreductase trd_0768 SM00363 S4 RNA-binding domain trd_0769 SM00904 Riboflavin kinase trd_0775 SM00316 Ribosomal protein S1-like RNA-binding domain trd_0775 SM00322 K homology RNA-binding domain trd_0778 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain trd_0793 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region trd_0797 SM00825 Beta-ketoacyl synthase trd_0802 SM00363 S4 RNA-binding domain trd_0813 SM00984 UDP binding domain trd_0816 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_0818 SM00849 Metallo-beta-lactamase superfamily trd_0830 SM00967 RNA 2'-O ribose methyltransferase substrate binding trd_0831 SM00411 bacterial (prokaryotic) histone like domain trd_0832 SM00387 Histidine kinase-like ATPases trd_0832 SM00433 TopoisomeraseII trd_0851 SM00838 Elongation factor G C-terminus trd_0862 SM00960 Roadblock/LC7 domain trd_0867 SM00798 AICARFT/IMPCHase bienzyme trd_0867 SM00851 MGS-like domain trd_0868 SM00933 trd_0868 trd_0870 SM01208 trd_0870 trd_0881 SM00382 ATPases associated with a variety of cellular activities trd_0888 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_0907 SM00854 Bacterial capsule synthesis protein PGA_cap trd_0911 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_0913 SM01209 trd_0913 trd_0918 SM00996 S-adenosyl-L-homocysteine hydrolase trd_0918 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain trd_0923 SM00852 Probable molybdopterin binding domain trd_0928 SM00567 E-Z type HEAT repeats trd_0950 SM00849 Metallo-beta-lactamase superfamily trd_0957 SM00662 RNA polymerases D trd_0958 SM00363 S4 RNA-binding domain trd_0958 SM01390 trd_0958 trd_0962 SM00316 Ribosomal protein S1-like RNA-binding domain trd_0974 SM01374 trd_0974 trd_0978 SM00322 K homology RNA-binding domain trd_0981 SM01382 trd_0981 trd_0981 SM01383 trd_0981 trd_0985 SM01403 trd_0985 trd_0987 SM00838 Elongation factor G C-terminus trd_0987 SM00889 Elongation factor G, domain IV trd_0990 SM00663 RNA polymerase I subunit A N-terminus trd_0997 SM00287 Bacterial SH3 domain homologues trd_1012 SM00448 cheY-homologous receiver domain trd_1013 SM00858 trd_1013 trd_1023 SM00382 ATPases associated with a variety of cellular activities trd_1023 SM00464 Found in ATP-dependent protease La (LON) trd_1032 SM00363 S4 RNA-binding domain trd_1034 SM00382 ATPases associated with a variety of cellular activities trd_1035 SM00382 ATPases associated with a variety of cellular activities trd_1035 SM01086 C-terminal, D2-small domain, of ClpB protein trd_1036 SM00316 Ribosomal protein S1-like RNA-binding domain trd_1039 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_1040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_1041 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_1044 SM00852 Probable molybdopterin binding domain trd_1054 SM00470 ParB-like nuclease domain trd_1056 SM01002 Alanine dehydrogenase/PNT, C-terminal domain trd_1056 SM01003 Alanine dehydrogenase/PNT, N-terminal domain trd_1057 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. trd_1064 SM00838 Elongation factor G C-terminus trd_1064 SM00889 Elongation factor G, domain IV trd_1067 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain trd_1075 SM00382 ATPases associated with a variety of cellular activities trd_1076 SM00347 helix_turn_helix multiple antibiotic resistance protein trd_1084 SM00393 Putative single-stranded nucleic acids-binding domain trd_1084 SM01245 trd_1084 trd_1086 SM01234 trd_1086 trd_1090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_1091 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_1106 SM00938 Nitrogen regulatory protein P-II trd_1109 SM00533 DNA-binding domain of DNA mismatch repair MUTS family trd_1109 SM00534 ATPase domain of DNA mismatch repair MUTS family trd_1114 SM00479 trd_1114 trd_1116 SM00100 Cyclic nucleotide-monophosphate binding domain trd_1116 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_1124 SM01004 Delta-aminolevulinic acid dehydratase trd_1131 SM00487 DEAD-like helicases superfamily trd_1131 SM00490 helicase superfamily c-terminal domain trd_1135 SM00382 ATPases associated with a variety of cellular activities trd_1142 SM01350 trd_1142 trd_1149 SM00382 ATPases associated with a variety of cellular activities trd_1166 SM00382 ATPases associated with a variety of cellular activities trd_1166 SM00760 Bacterial dnaA protein helix-turn-helix domain trd_1169 SM00347 helix_turn_helix multiple antibiotic resistance protein trd_1169 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_1172 SM00450 Rhodanese Homology Domain trd_1176 SM00481 DNA polymerase alpha chain like domain trd_1182 SM01119 trd_1182 trd_1185 SM00421 helix_turn_helix, Lux Regulon trd_1185 SM00448 cheY-homologous receiver domain trd_1186 SM01209 trd_1186 trd_1186 SM01210 trd_1186 trd_1192 SM00422 helix_turn_helix, mercury resistance trd_1195 SM00529 Helix-turn-helix diphteria tox regulatory element trd_1195 SM00899 trd_1195 trd_1201 SM00382 ATPases associated with a variety of cellular activities trd_1201 SM00994 ClpX C4-type zinc finger trd_1201 SM01086 C-terminal, D2-small domain, of ClpB protein trd_1207 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1208 SM01092 CO dehydrogenase flavoprotein C-terminal domain trd_1210 SM00327 von Willebrand factor (vWF) type A domain trd_1215 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1219 SM00382 ATPases associated with a variety of cellular activities trd_1228 SM00382 ATPases associated with a variety of cellular activities trd_1243 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_1268 SM00244 prohibitin homologues trd_1273 SM00448 cheY-homologous receiver domain trd_1273 SM00862 Transcriptional regulatory protein, C terminal trd_1274 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain trd_1274 SM00387 Histidine kinase-like ATPases trd_1274 SM00388 His Kinase A (phosphoacceptor) domain trd_1276 SM00861 Transketolase, pyrimidine binding domain trd_1288 SM00852 Probable molybdopterin binding domain trd_1290 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_1301 SM00883 Chaperonin 10 Kd subunit trd_1306 SM00650 Ribosomal RNA adenine dimethylases trd_1309 SM00450 Rhodanese Homology Domain trd_1310 SM00232 JAB/MPN domain trd_1313 SM00220 Serine/Threonine protein kinases, catalytic domain trd_1313 SM00740 trd_1313 trd_1322 SM00347 helix_turn_helix multiple antibiotic resistance protein trd_1326 SM00905 Dihydroneopterin aldolase trd_1341 SM00506 Appr-1"-p processing enzyme trd_1342 SM01329 trd_1342 trd_1343 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_1360 SM00867 YceI-like domain trd_1362 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_1366 SM00421 helix_turn_helix, Lux Regulon trd_1366 SM00448 cheY-homologous receiver domain trd_1367 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_1369 SM00849 Metallo-beta-lactamase superfamily trd_1375 SM01400 trd_1375 trd_1376 SM00358 Double-stranded RNA binding motif trd_1376 SM00535 Ribonuclease III family trd_1385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_1391 SM00903 Flavin reductase like domain trd_1393 SM00859 Semialdehyde dehydrogenase, NAD binding domain trd_1394 SM00346 helix_turn_helix isocitrate lyase regulation trd_1400 SM00382 ATPases associated with a variety of cellular activities trd_1401 SM00382 ATPases associated with a variety of cellular activities trd_1405 SM00382 ATPases associated with a variety of cellular activities trd_1406 SM00382 ATPases associated with a variety of cellular activities trd_1412 SM00933 trd_1412 trd_1413 SM00382 ATPases associated with a variety of cellular activities trd_1417 SM00854 Bacterial capsule synthesis protein PGA_cap trd_1420 SM00052 Putative diguanylate phosphodiesterase trd_1436 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_1438 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_1438 SM01240 trd_1438 trd_1449 SM00831 Cation transporter/ATPase, N-terminus trd_1453 SM00271 DnaJ molecular chaperone homology domain trd_1471 SM00926 Molybdopterin oxidoreductase Fe4S4 domain trd_1471 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region trd_1474 SM00845 GatB domain trd_1476 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase trd_1484 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_1494 SM00861 Transketolase, pyrimidine binding domain trd_1503 SM00382 ATPases associated with a variety of cellular activities trd_1506 SM00849 Metallo-beta-lactamase superfamily trd_1518 SM00859 Semialdehyde dehydrogenase, NAD binding domain trd_1529 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_1531 SM00028 Tetratricopeptide repeats trd_1543 SM00382 ATPases associated with a variety of cellular activities trd_1549 SM00487 DEAD-like helicases superfamily trd_1549 SM00490 helicase superfamily c-terminal domain trd_1551 SM00421 helix_turn_helix, Lux Regulon trd_1551 SM00448 cheY-homologous receiver domain trd_1552 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_1552 SM00387 Histidine kinase-like ATPases trd_1557 SM01230 trd_1557 trd_1558 SM01230 trd_1558 trd_1559 SM00052 Putative diguanylate phosphodiesterase trd_1559 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_1559 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) trd_1559 SM00091 PAS domain trd_1559 SM00267 diguanylate cyclase trd_1562 SM00382 ATPases associated with a variety of cellular activities trd_1562 SM00464 Found in ATP-dependent protease La (LON) trd_1571 SM00287 Bacterial SH3 domain homologues trd_1598 SM00634 Bacterial Ig-like domain (group 1) trd_1599 SM00091 PAS domain trd_1599 SM00387 Histidine kinase-like ATPases trd_1599 SM00388 His Kinase A (phosphoacceptor) domain trd_1600 SM00448 cheY-homologous receiver domain trd_1600 SM00862 Transcriptional regulatory protein, C terminal trd_1603 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain trd_1603 SM00437 Bacterial DNA topoisomerase I DNA-binding domain trd_1603 SM00493 trd_1603 trd_1605 SM00382 ATPases associated with a variety of cellular activities trd_1605 SM01086 C-terminal, D2-small domain, of ClpB protein trd_1613 SM00487 DEAD-like helicases superfamily trd_1613 SM00490 helicase superfamily c-terminal domain trd_1615 SM00072 Guanylate kinase homologues. trd_1618 SM00823 Phosphopantetheine attachment site trd_1620 SM00878 Biotin carboxylase C-terminal domain trd_1621 SM00822 trd_1621 trd_1622 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. trd_1629 SM00382 ATPases associated with a variety of cellular activities trd_1630 SM00382 ATPases associated with a variety of cellular activities trd_1647 SM00644 trd_1647 trd_1660 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_1661 SM00014 Acid phosphatase homologues trd_1666 SM00518 AP endonuclease family 2 trd_1667 SM00387 Histidine kinase-like ATPases trd_1668 SM00853 MutL C terminal dimerisation domain trd_1668 SM01340 trd_1668 trd_1669 SM00421 helix_turn_helix, Lux Regulon trd_1669 SM00448 cheY-homologous receiver domain trd_1689 SM01235 trd_1689 trd_1690 SM00917 LeuA allosteric (dimerisation) domain trd_1693 SM01329 trd_1693 trd_1695 SM00636 trd_1695 trd_1698 SM00841 Elongation factor P, C-terminal trd_1698 SM01185 trd_1698 trd_1705 SM00347 helix_turn_helix multiple antibiotic resistance protein trd_1709 SM00852 Probable molybdopterin binding domain trd_1711 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_1711 SM00954 Region found in RelA / SpoT proteins trd_1715 SM00382 ATPases associated with a variety of cellular activities trd_1718 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_1725 SM00670 Large family of predicted nucleotide-binding domains trd_1726 SM00481 DNA polymerase alpha chain like domain trd_1734 SM00861 Transketolase, pyrimidine binding domain trd_1741 SM00507 HNH nucleases trd_1746 SM00968 SMC proteins Flexible Hinge Domain trd_1749 SM00450 Rhodanese Homology Domain trd_1754 SM00421 helix_turn_helix, Lux Regulon trd_1759 SM00382 ATPases associated with a variety of cellular activities trd_1770 SM00562 trd_1770 trd_1791 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase trd_1793 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain trd_1795 SM00849 Metallo-beta-lactamase superfamily trd_1802 SM01007 Class II Aldolase and Adducin N-terminal domain trd_1803 SM00881 CoA binding domain trd_1808 SM00861 Transketolase, pyrimidine binding domain trd_1813 SM00052 Putative diguanylate phosphodiesterase trd_1813 SM00091 PAS domain trd_1813 SM00267 diguanylate cyclase trd_1816 SM00421 helix_turn_helix, Lux Regulon trd_1816 SM00448 cheY-homologous receiver domain trd_1817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain trd_1817 SM00387 Histidine kinase-like ATPases trd_1818 SM00382 ATPases associated with a variety of cellular activities trd_1818 SM00962 SRP54-type protein, GTPase domain trd_1818 SM00963 SRP54-type protein, helical bundle domain trd_1819 SM00382 ATPases associated with a variety of cellular activities trd_1819 SM00962 SRP54-type protein, GTPase domain trd_1819 SM00963 SRP54-type protein, helical bundle domain trd_1822 SM00644 trd_1822 trd_1822 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. trd_1828 SM00382 ATPases associated with a variety of cellular activities trd_1829 SM00382 ATPases associated with a variety of cellular activities trd_1833 SM00448 cheY-homologous receiver domain trd_1833 SM00862 Transcriptional regulatory protein, C terminal trd_1847 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1848 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_1879 SM00322 K homology RNA-binding domain trd_1879 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_1881 SM00240 Forkhead associated domain trd_1895 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain trd_1895 SM01232 trd_1895 trd_1907 SM00052 Putative diguanylate phosphodiesterase trd_1907 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) trd_1907 SM00091 PAS domain trd_1907 SM00267 diguanylate cyclase trd_1930 SM00642 Alpha-amylase domain trd_1931 SM00642 Alpha-amylase domain trd_1933 SM00642 Alpha-amylase domain trd_1939 SM00257 Lysin motif trd_1940 SM00046 Diacylglycerol kinase catalytic domain (presumed) trd_1941 SM01007 Class II Aldolase and Adducin N-terminal domain trd_1942 SM00829 Enoylreductase trd_1945 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_1954 SM00382 ATPases associated with a variety of cellular activities trd_1955 SM00382 ATPases associated with a variety of cellular activities trd_1956 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_1957 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_1958 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_1961 SM00257 Lysin motif trd_1963 SM00849 Metallo-beta-lactamase superfamily trd_1978 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain trd_A0012 SM00822 trd_A0012 trd_A0017 SM00382 ATPases associated with a variety of cellular activities trd_A0019 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain trd_A0021 SM00749 bacterial OsmY and nodulation domain trd_A0024 SM00382 ATPases associated with a variety of cellular activities trd_A0039 SM00382 ATPases associated with a variety of cellular activities trd_A0039 SM00962 SRP54-type protein, GTPase domain trd_A0056 SM00926 Molybdopterin oxidoreductase Fe4S4 domain trd_A0069 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0073 SM01092 CO dehydrogenase flavoprotein C-terminal domain trd_A0077 SM00345 helix_turn_helix gluconate operon transcriptional repressor trd_A0077 SM00895 trd_A0077 trd_A0080 SM00382 ATPases associated with a variety of cellular activities trd_A0081 SM00382 ATPases associated with a variety of cellular activities trd_A0089 SM00382 ATPases associated with a variety of cellular activities trd_A0091 SM00382 ATPases associated with a variety of cellular activities trd_A0139 SM00756 trd_A0139 trd_A0153 SM00345 helix_turn_helix gluconate operon transcriptional repressor trd_A0153 SM00895 trd_A0153 trd_A0155 SM00448 cheY-homologous receiver domain trd_A0156 SM01005 Alanine racemase, C-terminal domain trd_A0171 SM00382 ATPases associated with a variety of cellular activities trd_A0184 SM00382 ATPases associated with a variety of cellular activities trd_A0192 SM00382 ATPases associated with a variety of cellular activities trd_A0192 SM00710 Parallel beta-helix repeats trd_A0192 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses trd_A0197 SM00986 Uracil DNA glycosylase superfamily trd_A0197 SM00987 UreE urease accessory protein, C-terminal domain trd_A0210 SM00138 Methyltransferase, chemotaxis proteins trd_A0211 SM00448 cheY-homologous receiver domain trd_A0214 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_A0214 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain trd_A0215 SM00073 Histidine Phosphotransfer domain trd_A0215 SM00260 Two component signalling adaptor domain trd_A0215 SM00387 Histidine kinase-like ATPases trd_A0215 SM00448 cheY-homologous receiver domain trd_A0215 SM01231 trd_A0215 trd_A0217 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_A0217 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain trd_A0233 SM00530 Helix-turn-helix XRE-family like proteins trd_A0241 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain trd_A0249 SM00382 ATPases associated with a variety of cellular activities trd_A0257 SM00909 Sporulation and spore germination trd_A0281 SM00487 DEAD-like helicases superfamily trd_A0281 SM00490 helicase superfamily c-terminal domain trd_A0292 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. trd_A0294 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_A0295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). trd_A0306 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_A0309 SM00919 Malic enzyme, NAD binding domain trd_A0309 SM01274 trd_A0309 trd_A0310 SM00831 Cation transporter/ATPase, N-terminus trd_A0311 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_A0315 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. trd_A0320 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. trd_A0329 SM00382 ATPases associated with a variety of cellular activities trd_A0337 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0342 SM01130 trd_A0342 trd_A0343 SM00345 helix_turn_helix gluconate operon transcriptional repressor trd_A0343 SM00895 trd_A0343 trd_A0349 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_A0350 SM00116 Domain in cystathionine beta-synthase and other proteins. trd_A0350 SM01091 Transporter associated domain trd_A0355 SM00382 ATPases associated with a variety of cellular activities trd_A0386 SM00829 Enoylreductase trd_A0390 SM00487 DEAD-like helicases superfamily trd_A0390 SM00490 helicase superfamily c-terminal domain trd_A0400 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0421 SM00981 trd_A0421 trd_A0425 SM00244 prohibitin homologues trd_A0430 SM01230 trd_A0430 trd_A0442 SM00382 ATPases associated with a variety of cellular activities trd_A0446 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. trd_A0447 SM00825 Beta-ketoacyl synthase trd_A0448 SM00853 MutL C terminal dimerisation domain trd_A0448 SM01340 trd_A0448 trd_A0449 SM00533 DNA-binding domain of DNA mismatch repair MUTS family trd_A0449 SM00534 ATPase domain of DNA mismatch repair MUTS family trd_A0471 SM00345 helix_turn_helix gluconate operon transcriptional repressor trd_A0471 SM00895 trd_A0471 trd_A0479 SM00831 Cation transporter/ATPase, N-terminus trd_A0525 SM00481 DNA polymerase alpha chain like domain trd_A0532 SM00382 ATPases associated with a variety of cellular activities trd_A0536 SM00346 helix_turn_helix isocitrate lyase regulation trd_A0539 SM00829 Enoylreductase trd_A0563 SM00746 metallochaperone-like domain trd_A0564 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0566 SM01092 CO dehydrogenase flavoprotein C-terminal domain trd_A0569 SM00421 helix_turn_helix, Lux Regulon trd_A0569 SM00448 cheY-homologous receiver domain trd_A0570 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_A0570 SM00387 Histidine kinase-like ATPases trd_A0574 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. trd_A0574 SM00091 PAS domain trd_A0574 SM00267 diguanylate cyclase trd_A0581 SM01207 trd_A0581 trd_A0582 SM01120 trd_A0582 trd_A0582 SM01121 trd_A0582 trd_A0590 SM00849 Metallo-beta-lactamase superfamily trd_A0591 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_A0592 SM00382 ATPases associated with a variety of cellular activities trd_A0594 SM00346 helix_turn_helix isocitrate lyase regulation trd_A0597 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. trd_A0604 SM00382 ATPases associated with a variety of cellular activities trd_A0606 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. trd_A0607 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain trd_A0607 SM00387 Histidine kinase-like ATPases trd_A0607 SM00388 His Kinase A (phosphoacceptor) domain trd_A0608 SM00448 cheY-homologous receiver domain trd_A0608 SM00862 Transcriptional regulatory protein, C terminal trd_A0609 SM00867 YceI-like domain trd_A0628 SM00926 Molybdopterin oxidoreductase Fe4S4 domain trd_A0637 SM00382 ATPases associated with a variety of cellular activities trd_A0638 SM00382 ATPases associated with a variety of cellular activities trd_A0641 SM00710 Parallel beta-helix repeats trd_A0648 SM00382 ATPases associated with a variety of cellular activities trd_A0661 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain trd_A0665 SM01230 trd_A0665 trd_A0671 SM00567 E-Z type HEAT repeats trd_A0679 SM00710 Parallel beta-helix repeats trd_A0690 SM00421 helix_turn_helix, Lux Regulon trd_A0696 SM00382 ATPases associated with a variety of cellular activities trd_A0715 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain trd_A0719 SM00487 DEAD-like helicases superfamily trd_A0719 SM00490 helicase superfamily c-terminal domain trd_A0730 SM00318 Staphylococcal nuclease homologues trd_A0738 SM00903 Flavin reductase like domain trd_A0750 SM00344 helix_turn_helix ASNC type trd_A0754 SM00829 Enoylreductase trd_A0765 SM00470 ParB-like nuclease domain trd_A0769 SM00797 Allophanate hydrolase subunit 2 trd_A0770 SM00796 Allophanate hydrolase subunit 1 trd_A0773 SM00382 ATPases associated with a variety of cellular activities trd_A0775 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain trd_A0777 SM01092 CO dehydrogenase flavoprotein C-terminal domain trd_A0778 SM00878 Biotin carboxylase C-terminal domain trd_A0786 SM00220 Serine/Threonine protein kinases, catalytic domain trd_A0797 SM00226 Low molecular weight phosphatase family trd_A0800 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain trd_A0805 SM00318 Staphylococcal nuclease homologues trd_A0809 SM00382 ATPases associated with a variety of cellular activities trd_A0811 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_A0827 SM00881 CoA binding domain trd_A0831 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor trd_A0832 SM00834 Putative regulatory protein trd_A0834 SM00450 Rhodanese Homology Domain trd_A0834 SM00849 Metallo-beta-lactamase superfamily trd_A0835 SM00450 Rhodanese Homology Domain trd_A0838 SM00704 CDGSH-type zinc finger. Function unknown. trd_A0840 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_A0843 SM00829 Enoylreductase trd_A0847 SM00829 Enoylreductase trd_A0868 SM00478 endonuclease III trd_A0868 SM00525 trd_A0868 trd_A0875 SM00763 PrkA AAA domain trd_A0888 SM00382 ATPases associated with a variety of cellular activities trd_A0899 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_A0900 SM00729 Elongator protein 3, MiaB family, Radical SAM trd_A0916 SM00345 helix_turn_helix gluconate operon transcriptional repressor trd_A0916 SM00895 trd_A0916 trd_A0917 SM01130 trd_A0917