locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
trd_0002	trd_0002		trd_0002	102	1154	+	DNA polymerase III tau and gamma subunits	identified by match to protein family HMM TIGR00678	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0002
trd_0003	trd_0003		trd_0003	1796	4120	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0003
trd_0004	trd_0004		trd_0004	1145	1801	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0004
trd_0005	trd_0005		trd_0005	4299	6422	-	Tetratricopeptide repeat family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0005
trd_0006	trd_0006		trd_0006	6419	7444	-	threonine ammonia-lyase%2C biosynthetic	identified by match to protein family HMM PF00291	gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0006
trd_0007	trd_0007		trd_0007	7397	7546	+	hypothetical protein	identified by glimmer%3B putative	gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0007
trd_0008	trd_0008		trd_0008	7673	7795	-	hypothetical protein	identified by glimmer%3B putative	gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0008
trd_0009	trd_0009		trd_0009	8491	11175	-	hypothetical protein	identified by glimmer%3B putative	gene	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0009
trd_0010	trd_0010	pyrF	pyrF	11231	12076	+	orotidine 5'-phosphate decarboxylase	identified by match to protein family HMM PF00215%3B match to protein family HMM TIGR02127	gene	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0010
trd_0011	trd_0011		trd_0011	12112	12651	-	protease I	identified by match to protein family HMM PF01965%3B match to protein family HMM TIGR01382	gene	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0011
trd_0012	trd_0012		trd_0012	12729	13541	-	putative membrane protein		gene	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0012
trd_0013	trd_0013		trd_0013	13541	14467	-	probable transport ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0013
trd_0014	trd_0014		trd_0014	14659	15312	-	tRNA guanosine-2'-O-methyltransferase	identified by match to protein family HMM PF00588	gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0014
trd_0015	trd_0015		trd_0015	15375	15758	+	hypothetical protein	identified by glimmer%3B putative	gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0015
trd_0016	trd_0016	cas6	cas6	16735	17598	+	CRISPR-associated protein Cas6	identified by match to protein family HMM PF01881%3B match to protein family HMM TIGR01877	gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0016
trd_0017	trd_0017		trd_0017	17595	19292	+	hypothetical protein	identified by glimmer%3B putative	gene	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0017
trd_0018	trd_0018	cst2	cst2	19365	20432	+	CRISPR-associated regulatory protein%2C DevR family	identified by match to protein family HMM TIGR01875%3B match to protein family HMM TIGR02585	gene	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0018
trd_0019	trd_0019	cas5t	cas5t	20455	21162	+	CRISPR-associated protein Cas5%2C Tneap subtype	identified by match to protein family HMM TIGR01895%3B match to protein family HMM TIGR02593	gene	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0019
trd_0020	trd_0020	cas3	cas3	21152	23473	+	CRISPR-associated helicase Cas3 domain protein	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR01587	gene	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0020
trd_0021	trd_0021	cas4	cas4	23488	24075	+	CRISPR-associated protein Cas4	identified by match to protein family HMM PF01930%3B match to protein family HMM TIGR00372	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0021
trd_0022	trd_0022	cas1	cas1	24072	25061	+	CRISPR-associated protein Cas1	identified by match to protein family HMM PF01867%3B match to protein family HMM TIGR00287%3B match to protein family HMM TIGR03641	gene	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0022
trd_0023	trd_0023		trd_0023	25386	26456	-	hydrogenase expression/formation protein HypE	identified by match to protein family HMM PF02769	gene	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0023
trd_0024	trd_0024		trd_0024	25126	25389	+	CRISPR-associated protein Cas2	identified by match to protein family HMM PF02647%3B match to protein family HMM TIGR01573	gene	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0024
trd_0025	trd_0025		trd_0025	26685	27293	-	glutamine amidotransferase subunit pdxT	identified by match to protein family HMM PF01174%3B match to protein family HMM PF07685	gene	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0025
trd_0026	trd_0026		trd_0026	27304	28206	-	pyridoxine biosynthesis protein	identified by match to protein family HMM PF01680%3B match to protein family HMM TIGR00343	gene	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0026
trd_0027	trd_0027		trd_0027	28233	29576	-	aminotransferase%2C class I and II	identified by match to protein family HMM PF00155	gene	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0027
trd_0028	trd_0028		trd_0028	29573	30691	-	hypothetical protein	identified by glimmer%3B putative	gene	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0028
trd_0029	trd_0029		trd_0029	30736	30855	+	hypothetical protein	identified by glimmer%3B putative	gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0029
trd_0031	trd_0031		trd_0031	36860	38383	+	UDP-N-acetylglucosamine synthesis bifunctional protein	identified by match to protein family HMM PF00483	gene	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0031
trd_0032	trd_0032		trd_0032	38388	39326	+	ribose-phosphate pyrophosphokinase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251	gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0032
trd_0033	trd_0033		trd_0033	39368	40630	+	magnesium and cobalt efflux protein corC	identified by match to protein family HMM PF00571%3B match to protein family HMM PF03471	gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0033
trd_0034	trd_0034		trd_0034	41175	42314	-	N5%2CN10-methylenetetrahydromethanopterin reductase-related protein	identified by match to protein family HMM PF00296	gene	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0034
trd_0035	trd_0035		trd_0035	40637	41188	+	BirA protein	identified by match to protein family HMM PF03099	gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0035
trd_0036	trd_0036		trd_0036	42561	42833	+	putative cellulose-binding protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0036
trd_0037	trd_0037		trd_0037	42864	43292	-	hypothetical protein	identified by glimmer%3B putative	gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0037
trd_0038	trd_0038		trd_0038	43284	43439	+	hypothetical protein	identified by glimmer%3B putative	gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0038
trd_0039	trd_0039		trd_0039	43718	44929	+	acyl-CoA dehydrogenase	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0039
trd_0040	trd_0040		trd_0040	44931	45467	+	conserved hypothetical protein	identified by match to protein family HMM PF00132	gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0040
trd_0041	trd_0041		trd_0041	45464	46237	+	3-hydroxybutyryl-CoA dehydratase	identified by match to protein family HMM PF00378	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0041
trd_0042	trd_0042		trd_0042	46271	47035	+	electron transfer flavoprotein beta-subunit	identified by match to protein family HMM PF01012	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0042
trd_0043	trd_0043		trd_0043	47054	48046	+	electron transfer flavoprotein alpha subunit	identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0043
trd_0044	trd_0044		trd_0044	48043	49341	+	putative FAD dependent oxidoreductase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992	gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0044
trd_0045	trd_0045		trd_0045	49406	50275	+	putative CvpA family protein	identified by match to protein family HMM PF02674	gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0045
trd_0046	trd_0046		trd_0046	50507	50677	+	hypothetical protein	identified by glimmer%3B putative	gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0046
trd_0047	trd_0047		trd_0047	50684	51187	-	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0047
trd_0048	trd_0048		trd_0048	51341	57166	-	PAS domain S-box protein	identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM PF08447%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0048
trd_0049	trd_0049		trd_0049	57525	58982	+	putative RNA nucleotidyltransferase	identified by match to protein family HMM PF01743%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0049
trd_0050	trd_0050		trd_0050	59015	60220	+	hypothetical protein	identified by glimmer%3B putative	gene	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0050
trd_0051	trd_0051		trd_0051	60192	60365	+	hypothetical protein	identified by glimmer%3B putative	gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0051
trd_0052	trd_0052		trd_0052	61007	62080	+	tyrosine recombinase xerC	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02899	gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0052
trd_0053	trd_0053		trd_0053	62193	62459	-	hypothetical protein	identified by glimmer%3B putative	gene	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0053
trd_0054	trd_0054		trd_0054	62593	63603	-	hypothetical protein	identified by glimmer%3B putative	gene	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0054
trd_0055	trd_0055	mraZ	mraZ	63584	64012	+	mraZ protein	identified by match to protein family HMM PF02381%3B match to protein family HMM TIGR00242	gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0055
trd_0056	trd_0056	mraW	mraW	64032	65012	+	S-adenosyl-methyltransferase MraW	identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006	gene	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0056
trd_0057	trd_0057		trd_0057	65002	65460	+	hypothetical protein	identified by glimmer%3B putative	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0057
trd_0058	trd_0058		trd_0058	65457	67184	+	penicillin-binding protein	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717	gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0058
trd_0059	trd_0059		trd_0059	67181	68581	+	probable udp-n-acetylmuramoylalanyl-d-glutamyl-2%2C 6-diaminopimelate--d-alanyl-d-alanyl ligase protein	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01143	gene	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0059
trd_0060	trd_0060	mraY	mraY	68578	69597	+	phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR00445	gene	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0060
trd_0061	trd_0061	murD	murD	69613	71022	+	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01087	gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0061
trd_0062	trd_0062	ftsW	ftsW	71022	72296	+	cell division protein FtsW	identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02614	gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0062
trd_0063	trd_0063	murC	murC	72293	73681	+	UDP-N-acetylmuramate--alanine ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01082	gene	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0063
trd_0064	trd_0064	murB	murB	73659	74618	+	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0064
trd_0065	trd_0065		trd_0065	74622	75740	+	D-alanine--D-alanine ligase	identified by match to protein family HMM PF01820%3B match to protein family HMM PF02222%3B match to protein family HMM PF07478%3B match to protein family HMM TIGR01205	gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0065
trd_0066	trd_0066		trd_0066	75737	76456	+	cell division protein ftsQ homolog	identified by match to protein family HMM PF08478	gene	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0066
trd_0067	trd_0067		trd_0067	76471	76608	+	hypothetical protein	identified by glimmer%3B putative	gene	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0067
trd_0068	trd_0068	ftsZ	ftsZ	76614	77729	+	cell division protein FtsZ	identified by match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065	gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0068
trd_0069	trd_0069	nrdR	nrdR	77748	78233	+	transcriptional regulator%2C NrdR family	identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244	gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0069
trd_0070	trd_0070		trd_0070	78191	79363	+	hypothetical protein	identified by glimmer%3B putative	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0070
trd_0071	trd_0071	trx	trx	79413	79736	-	thioredoxin	identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0071
trd_0072	trd_0072		trd_0072	80067	81029	+	putative fructokinase	identified by match to protein family HMM PF00294	gene	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0072
trd_0073	trd_0073		trd_0073	81053	82456	+	aminopeptidase	identified by match to protein family HMM PF02225%3B match to protein family HMM PF04389	gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0073
trd_0074	trd_0074		trd_0074	82533	84128	-	Amidohydrolase family	identified by match to protein family HMM PF07969	gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0074
trd_0075	trd_0075		trd_0075	84484	84822	+	putative arsenic-efflux pump regulatory protein	identified by match to protein family HMM PF01022	gene	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0075
trd_0076	trd_0076		trd_0076	85026	85256	+	hypothetical protein	identified by glimmer%3B putative	gene	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0076
trd_0077	trd_0077		trd_0077	85283	86776	+	putative FAD dependent oxidoreductase	identified by match to protein family HMM PF01266	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0077
trd_0078	trd_0078		trd_0078	86783	87646	-	putative membrane protein		gene	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0078
trd_0079	trd_0079		trd_0079	89783	90688	-	putative universal stress protein	identified by match to protein family HMM PF00582	gene	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0079
trd_0080	trd_0080		trd_0080	87796	89814	+	putative integral membrane protein		gene	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0080
trd_0081	trd_0081		trd_0081	90738	91694	-	putative integral membrane export protein	identified by match to protein family HMM PF03741	gene	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0081
trd_0082	trd_0082		trd_0082	92197	93852	-	alpha-D-1%2C4-glucosidase	identified by match to protein family HMM PF00128	gene	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0082
trd_0083	trd_0083		trd_0083	93878	94369	-	hypothetical protein	identified by glimmer%3B putative	gene	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0083
trd_0084	trd_0084	recG	recG	94450	96873	+	ATP-dependent DNA helicase RecG	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF01336%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00643	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0084
trd_0085	trd_0085		trd_0085	97655	98257	-	putative flavin reductase-like protein	identified by match to protein family HMM PF01613	gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0085
trd_0086	trd_0086		trd_0086	96888	97676	+	hypothetical protein	identified by glimmer%3B putative	gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0086
trd_0087	trd_0087		trd_0087	98264	99400	-	putative glycosyl transferase	identified by match to protein family HMM PF00534	gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0087
trd_0088	trd_0088		trd_0088	99388	100728	-	glycosyltransferase WbpY	identified by match to protein family HMM PF00534	gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0088
trd_0089	trd_0089	rpmB	rpmB	100807	100998	+	ribosomal protein L28	identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009	gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0089
trd_0090	trd_0090		trd_0090	101023	101874	-	methyltransferase%2C HemK family	identified by match to protein family HMM TIGR00536%3B match to protein family HMM TIGR03387	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0090
trd_0091	trd_0091	prfA	prfA	101883	102974	-	peptide chain release factor 1	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019	gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0091
trd_0092	trd_0092		trd_0092	102971	103480	-	conserved hypothetical protein TIGR00725	identified by match to protein family HMM TIGR00725	gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0092
trd_0093	trd_0093		trd_0093	103477	104052	-	2'-5' RNA ligase	identified by match to protein family HMM PF02834%3B match to protein family HMM TIGR02258	gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0093
trd_0094	trd_0094		trd_0094	104245	104499	+	hypothetical protein	identified by glimmer%3B putative	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0094
trd_0095	trd_0095		trd_0095	104551	105408	+	P-protein	identified by match to protein family HMM PF00800%3B match to protein family HMM PF01842	gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0095
trd_0096	trd_0096		trd_0096	105421	106008	+	N6-adenine-specific methylase	identified by match to protein family HMM PF03602%3B match to protein family HMM PF05175	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0096
trd_0097	trd_0097	coaD	coaD	106005	106508	+	pantetheine-phosphate adenylyltransferase	identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510	gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0097
trd_0098	trd_0098		trd_0098	106513	107001	+	conserved hypothetical protein		gene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0098
trd_0099	trd_0099		trd_0099	107040	107246	-	hypothetical protein	identified by glimmer%3B putative	gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0099
trd_0100	trd_0100		trd_0100	107247	109193	-	putative methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0100
trd_0101	trd_0101		trd_0101	109215	109424	-	methyl-accepting chemotaxis protein McpL	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0101
trd_0102	trd_0102	trpE	trpE	110224	111843	+	anthranilate synthase component I	identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00564	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0102
trd_0103	trd_0103		trd_0103	111840	112451	+	para-aminobenzoate synthase glutamine amidotransferase component II	identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566	gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0103
trd_0104	trd_0104	trpD	trpD	112448	113494	+	anthranilate phosphoribosyltransferase	identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM TIGR01245	gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0104
trd_0105	trd_0105	trpC	trpC	113491	114318	+	indole-3-glycerol phosphate synthase	identified by match to protein family HMM PF00218	gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0105
trd_0106	trd_0106	trpF	trpF	114303	114995	+	N-(5'phosphoribosyl)anthranilate isomerase	identified by match to protein family HMM PF00697	gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0106
trd_0107	trd_0107	trpB	trpB	114992	116206	+	tryptophan synthase%2C beta subunit	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00263	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0107
trd_0108	trd_0108	trpA	trpA	116206	117036	+	tryptophan synthase%2C alpha subunit	identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262	gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0108
trd_0109	trd_0109	aroH	aroH	117043	117459	+	chorismate mutase	identified by match to protein family HMM PF07736%3B match to protein family HMM TIGR01796	gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0109
trd_0110	trd_0110	aroF	aroF	117456	118514	+	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01361	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0110
trd_0111	trd_0111	rimM	rimM	119164	119718	-	16S rRNA processing protein RimM	identified by match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0111
trd_0112	trd_0112		trd_0112	118523	119179	+	histidine biosynthesis bifunctional protein hisIE	identified by match to protein family HMM PF01502%3B match to protein family HMM PF01503%3B match to protein family HMM TIGR03188%3B match to protein family HMM TIGR03456	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0112
trd_0113	trd_0113		trd_0113	119681	120028	-	conserved hypothetical protein		gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0113
trd_0114	trd_0114	rpsP	rpsP	120041	120340	-	ribosomal protein S16	identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0114
trd_0115	trd_0115		trd_0115	120815	121147	-	putative Domain of unknown function	identified by match to protein family HMM PF01906	gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0115
trd_0116	trd_0116		trd_0116	121514	122800	-	acyl-CoA dehydrogenase	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0116
trd_0117	trd_0117		trd_0117	122797	124947	-	putative pimeloyl-CoA synthetase	identified by match to protein family HMM PF02629	gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0117
trd_0118	trd_0118		trd_0118	124965	125402	-	thioesterase family protein	identified by match to protein family HMM PF03061	gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0118
trd_0119	trd_0119		trd_0119	125806	126990	-	putative transport system periplasmic protein	identified by match to protein family HMM PF01547	gene	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0119
trd_0120	trd_0120		trd_0120	127029	128195	-	putative sarcosine oxidase subunit beta	identified by match to protein family HMM PF01266	gene	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0120
trd_0121	trd_0121		trd_0121	128242	129378	-	rieske 2Fe-2S domain protein	identified by match to protein family HMM PF00355	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0121
trd_0122	trd_0122		trd_0122	129467	129649	-	hypothetical protein	identified by glimmer%3B putative	gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0122
trd_0123	trd_0123		trd_0123	129807	130970	-	putative oxidoreductase protein	identified by match to protein family HMM PF01266	gene	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0123
trd_0124	trd_0124		trd_0124	131009	131506	-	Carbon monoxide dehydrogenase subunit G (CoxG) superfamily	identified by match to protein family HMM PF06240	gene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0124
trd_0125	trd_0125		trd_0125	131800	133335	+	helix-turn-helix%2C Fis-type	identified by match to protein family HMM PF07905	gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0125
trd_0126	trd_0126		trd_0126	133642	133727	+	tRNA-Leu		tRNA	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0126
trd_0127	trd_0127		trd_0127	133752	134702	-	transposase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00589	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0127
trd_0128	trd_0128		trd_0128	134759	134965	+	hypothetical protein	identified by glimmer%3B putative	gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0128
trd_0129	trd_0129		trd_0129	135215	135898	-	GntR-family transcriptional regulator	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0129
trd_0130	trd_0130		trd_0130	135951	136790	-	NADP oxidoreductase coenzyme F420-dependent family		gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0130
trd_0131	trd_0131		trd_0131	136830	138155	-	ygbK domain protein	identified by match to protein family HMM PF07005	gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0131
trd_0132	trd_0132		trd_0132	138155	139411	-	ribulose bisphosphate carboxylase	identified by match to protein family HMM PF00016	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0132
trd_0133	trd_0133		trd_0133	139413	140465	-	probable nadh-dependent dyhydrogenase	identified by match to protein family HMM PF01408	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0133
trd_0134	trd_0134		trd_0134	140462	142204	-	conserved hypothetical protein		gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0134
trd_0135	trd_0135		trd_0135	142309	143841	-	putative Bacterial extracellular solute-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01409	gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0135
trd_0136	trd_0136		trd_0136	143893	144774	-	possible multiple sugar transport system permease protein	identified by match to protein family HMM PF00528	gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0136
trd_0137	trd_0137		trd_0137	144776	145684	-	sugar abc transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0137
trd_0138	trd_0138		trd_0138	146292	146597	-	hypothetical protein	identified by glimmer%3B putative	gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0138
trd_0139	trd_0139		trd_0139	146698	146988	-	hypothetical protein	identified by glimmer%3B putative	gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0139
trd_0140	trd_0140		trd_0140	147115	148047	-	putative purple acid phosphatase-like protein	identified by match to protein family HMM PF00149	gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0140
trd_0141	trd_0141		trd_0141	148057	152910	-	putative cable pili-associated 22 kDa adhesin protein	identified by match to protein family HMM PF00041%3B match to protein family HMM PF00149	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0141
trd_0142	trd_0142		trd_0142	153163	154236	-	putative protein	identified by match to protein family HMM PF03099	gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0142
trd_0143	trd_0143		trd_0143	154253	154717	-	glycine cleavage system H protein	identified by match to protein family HMM PF01597	gene	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0143
trd_0144	trd_0144		trd_0144	154714	155151	-	GcvH	identified by match to protein family HMM PF01597	gene	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0144
trd_0145	trd_0145		trd_0145	155144	155443	-	hypothetical protein	identified by glimmer%3B putative	gene	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0145
trd_0146	trd_0146		trd_0146	155440	155913	-	hypothetical protein	identified by glimmer%3B putative	gene	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0146
trd_0147	trd_0147		trd_0147	155910	157946	-	heterodisulfide reductase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02754	gene	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0147
trd_0148	trd_0148		trd_0148	157951	158916	-	electron transfer flavoprotein alpha-subunit	identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0148
trd_0149	trd_0149		trd_0149	158932	159699	-	electron transfer flavoprotein subunit beta	identified by match to protein family HMM PF01012	gene	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0149
trd_0150	trd_0150		trd_0150	159696	160997	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02754	gene	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0150
trd_0151	trd_0151		trd_0151	161010	161810	-	hypothetical protein	identified by glimmer%3B putative	gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0151
trd_0152	trd_0152		trd_0152	161820	162062	-	conserved hypothetical protein		gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0152
trd_0153	trd_0153		trd_0153	162116	163183	-	CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0153
trd_0154	trd_0154		trd_0154	163194	164411	-	conserved protein	identified by match to protein family HMM PF02754	gene	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0154
trd_0155	trd_0155		trd_0155	164408	165112	-	metabolism heterodisulfide reductase C		gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0155
trd_0156	trd_0156		trd_0156	165115	165378	-	thioredoxin:Glutaredoxin:Thioredoxins/glutaredox i n		gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0156
trd_0157	trd_0157		trd_0157	165375	165857	-	glycine cleavage H protein	identified by match to protein family HMM PF01597	gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0157
trd_0158	trd_0158		trd_0158	165857	166240	-	putative protein	identified by match to protein family HMM PF02635	gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0158
trd_0159	trd_0159		trd_0159	166262	166783	-	hypothetical conserved protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0159
trd_0160	trd_0160		trd_0160	166802	167044	-	Uncharacterized protein family UPF0033	identified by match to protein family HMM PF01206	gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0160
trd_0161	trd_0161		trd_0161	167325	167579	-	hypothetical protein	identified by glimmer%3B putative	gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0161
trd_0162	trd_0162		trd_0162	167677	168336	+	Translin family	identified by match to protein family HMM PF01997	gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0162
trd_0163	trd_0163		trd_0163	168348	168770	-	putative protein	identified by match to protein family HMM PF00210%3B match to protein family HMM PF02915	gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0163
trd_0164	trd_0164		trd_0164	168824	170290	-	Glycine cleavage system P-protein	identified by match to protein family HMM PF02347	gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0164
trd_0165	trd_0165		trd_0165	170523	171530	+	hypothetical Membrane Spanning Protein	identified by match to protein family HMM PF07136	gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0165
trd_0166	trd_0166	argH	argH	171527	172984	+	argininosuccinate lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00838	gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0166
trd_0167	trd_0167	argA	argA	172981	173475	+	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0167
trd_0168	trd_0168	lipA	lipA	173475	174386	+	lipoic acid synthetase	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00510	gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0168
trd_0169	trd_0169		trd_0169	175086	177932	-	putative DNA helicase	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF08148	gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0169
trd_0170	trd_0170	lipB	lipB	174392	175135	+	lipoate-protein ligase B	identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00214	gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0170
trd_0171	trd_0171		trd_0171	178030	179187	+	mannosyltransferase B	identified by match to protein family HMM PF00534	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0171
trd_0172	trd_0172	thiL	thiL	179184	180209	+	thiamine-monophosphate kinase	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01379	gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0172
trd_0173	trd_0173		trd_0173	180266	181693	+	glutamyl-tRNA(Gln) amidotransferase subunit A	identified by match to protein family HMM PF01425	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0173
trd_0174	trd_0174		trd_0174	181690	182229	+	Uncharacterized P-loop hydrolase UPF0079	identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150	gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0174
trd_0175	trd_0175		trd_0175	182192	182920	+	putative glycoprotease family	identified by match to protein family HMM PF00814	gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0175
trd_0176	trd_0176		trd_0176	182898	183608	+	ribosomal-protein-alanine acetyltransferase	identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR01575	gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0176
trd_0177	trd_0177		trd_0177	183605	184702	+	O-sialoglycoprotein endopeptidase	identified by match to protein family HMM PF00814%3B match to protein family HMM TIGR00329	gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0177
trd_0178	trd_0178		trd_0178	184706	185503	+	inositol-1-monophosphatase	identified by match to protein family HMM PF00459	gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0178
trd_0179	trd_0179		trd_0179	185500	186459	+	histone deacetylase family protein	identified by match to protein family HMM PF00850	gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0179
trd_0180	trd_0180	hisH	hisH	186474	187118	+	imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit	identified by match to protein family HMM PF00117%3B match to protein family HMM PF01174%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR01855	gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0180
trd_0181	trd_0181	hisA	hisA	187115	187849	+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00007	gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0181
trd_0182	trd_0182		trd_0182	187846	188964	+	conserved hypothetical protein		gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0182
trd_0183	trd_0183	hisF	hisF	188964	189746	+	imidazoleglycerol phosphate synthase%2C cyclase subunit	identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735	gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0183
trd_0184	trd_0184		trd_0184	189972	191255	+	cell wall-associated hydrolases	identified by match to protein family HMM PF00877%3B match to protein family HMM PF08239	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0184
trd_0185	trd_0185		trd_0185	191298	191447	-	hypothetical protein	identified by glimmer%3B putative	gene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0185
trd_0186	trd_0186		trd_0186	191637	192536	-	putative permease		gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0186
trd_0187	trd_0187		trd_0187	192551	193465	-	putative ABC transporter ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0187
trd_0188	trd_0188	recA	recA	193510	194574	-	recA protein	identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012	gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0188
trd_0189	trd_0189		trd_0189	194660	194998	-	Protein of unknown function (DUF970) superfamily	identified by match to protein family HMM PF06153	gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0189
trd_0190	trd_0190		trd_0190	194995	196659	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0190
trd_0191	trd_0191		trd_0191	196656	197651	-	putative Cobalt transport protein	identified by match to protein family HMM PF02361	gene	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0191
trd_0192	trd_0192		trd_0192	197648	198586	-	hypothetical protein	identified by glimmer%3B putative	gene	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0192
trd_0193	trd_0193		trd_0193	198583	200088	-	Prenyltransferase and squalene oxidase repeat domain protein		gene	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0193
trd_0194	trd_0194		trd_0194	200776	202062	-	1%2C3-propanediol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0194
trd_0195	trd_0195		trd_0195	202202	203071	-	purine nucleoside phosphorylase	identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01697	gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0195
trd_0196	trd_0196	recO	recO	203034	203870	-	DNA repair protein RecO	identified by match to protein family HMM PF02565%3B match to protein family HMM TIGR00613	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0196
trd_0197	trd_0197		trd_0197	203867	204508	-	putative aldolase	identified by match to protein family HMM PF01081%3B match to protein family HMM PF01791%3B match to protein family HMM PF02581%3B match to protein family HMM TIGR01182	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0197
trd_0198	trd_0198		trd_0198	205435	206055	-	conserved hypothetical protein		gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0198
trd_0199	trd_0199		trd_0199	204586	205449	+	putative NAD(+) kinase	identified by match to protein family HMM PF01513	gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0199
trd_0200	trd_0200		trd_0200	206078	206422	-	Protein of unknown function (DUF970) superfamily	identified by match to protein family HMM PF06153	gene	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0200
trd_0201	trd_0201	tmk	tmk	206419	207051	-	thymidylate kinase	identified by match to protein family HMM PF02223%3B match to protein family HMM TIGR00041	gene	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0201
trd_0202	trd_0202		trd_0202	207048	208736	-	ATPase-like protein	identified by match to protein family HMM PF01424	gene	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0202
trd_0203	trd_0203		trd_0203	208795	209781	-	hypothetical protein	identified by glimmer%3B putative	gene	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0203
trd_0204	trd_0204	recR	recR	209812	210417	-	recombination protein RecR	identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615	gene	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0204
trd_0205	trd_0205		trd_0205	210497	212734	-	DNA translocase ftsK	identified by match to protein family HMM PF01580	gene	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0205
trd_0206	trd_0206		trd_0206	212784	213476	-	phage DNA polymerase-related protein	identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00758	gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0206
trd_0207	trd_0207		trd_0207	213313	215394	-	DNA polymerase III%2C epsilon subunit	identified by match to protein family HMM PF00929%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00573	gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0207
trd_0208	trd_0208		trd_0208	215391	215558	-	hypothetical protein	identified by glimmer%3B putative	gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0208
trd_0209	trd_0209	pyrE	pyrE	217629	218201	-	orotate phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01367	gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0209
trd_0210	trd_0210	ligA	ligA	215547	217634	+	DNA ligase%2C NAD-dependent	identified by match to protein family HMM PF00533%3B match to protein family HMM PF00633%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0210
trd_0211	trd_0211		trd_0211	218177	219505	-	vacuolar cation/proton exchanger 1a	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01699	gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0211
trd_0212	trd_0212	carB	carB	219515	222751	-	carbamoyl-phosphate synthase%2C large subunit	identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02142%3B match to protein family HMM PF02222%3B match to protein family HMM PF02655%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369	gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0212
trd_0213	trd_0213	carA	carA	222754	223905	-	carbamoyl-phosphate synthase%2C small subunit	identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0213
trd_0214	trd_0214		trd_0214	223814	225205	-	dihydroorotase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR00857	gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0214
trd_0215	trd_0215	maf	maf	225611	226267	-	septum formation protein Maf	identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172	gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0215
trd_0216	trd_0216	rumA	rumA	226264	227484	-	23S rRNA (uracil-5-)-methyltransferase RumA	identified by match to protein family HMM PF01938%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479	gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0216
trd_0217	trd_0217		trd_0217	227907	228257	+	S-adenosylmethionine decarboxylase proenzyme	identified by match to protein family HMM PF02675	gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0217
trd_0218	trd_0218	speE	speE	228250	229188	+	spermidine synthase	identified by match to protein family HMM PF01564%3B match to protein family HMM TIGR00417	gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0218
trd_0219	trd_0219		trd_0219	229339	230604	-	conserved hypothetical protein		gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0219
trd_0220	trd_0220		trd_0220	230715	231695	-	efflux transporter%2C RND family%2C MFP subunit	identified by match to protein family HMM TIGR01730	gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0220
trd_0221	trd_0221		trd_0221	231688	234039	-	putative permease domain protein	identified by match to protein family HMM PF02687	gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0221
trd_0222	trd_0222		trd_0222	234145	234294	+	hypothetical protein	identified by glimmer%3B putative	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0222
trd_0223	trd_0223		trd_0223	234320	236191	+	peptide/opine/nickel uptake family ABC transporter%2C periplasmic substrate-binding protein	identified by match to protein family HMM PF00496	gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0223
trd_0224	trd_0224		trd_0224	236244	236945	-	putative ABC superfamily (atp%26memb) transport protein	identified by match to protein family HMM PF00005	gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0224
trd_0225	trd_0225		trd_0225	236968	237228	-	Transglycosylase associated protein	identified by match to protein family HMM PF04226	gene	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0225
trd_0226	trd_0226	trmD	trmD	237215	238021	-	tRNA (guanine-N1)-methyltransferase	identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088	gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0226
trd_0227	trd_0227		trd_0227	238078	239394	-	HD domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0227
trd_0228	trd_0228		trd_0228	239583	239732	-	hypothetical protein	identified by glimmer%3B putative	gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0228
trd_0229	trd_0229	rfbB	rfbB	240059	241093	+	dTDP-glucose 4%2C6-dehydratase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181	gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0229
trd_0230	trd_0230		trd_0230	241090	241803	+	putative Stage II sporulation protein E (SpoIIE)	identified by match to protein family HMM PF07228	gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0230
trd_0231	trd_0231		trd_0231	241858	242208	+	conserved hypothetical protein		gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0231
trd_0232	trd_0232		trd_0232	242198	243919	+	putative oligopeptide-binding protein	identified by match to protein family HMM PF00496	gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0232
trd_0233	trd_0233		trd_0233	243946	244833	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0233
trd_0234	trd_0234	aroC	aroC	244839	245906	+	chorismate synthase	identified by match to protein family HMM PF01264%3B match to protein family HMM TIGR00033	gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0234
trd_0235	trd_0235	aroA	aroA	245911	247215	-	3-phosphoshikimate 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01356	gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0235
trd_0236	trd_0236		trd_0236	247226	247681	-	dTDP-4-dehydrorhamnose 3%2C5-epimerase		gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0236
trd_0237	trd_0237		trd_0237	247703	248512	-	putative S-adenosylmethionine (SAM)-dependent methyltransferase	identified by match to protein family HMM PF02353%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0237
trd_0238	trd_0238	smpB	smpB	248683	249165	+	SsrA-binding protein	identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0238
trd_0239	trd_0239		trd_0239	249350	249702	+	sRNA		ncRNA	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0239
trd_0240	trd_0240		trd_0240	250101	250262	-	hypothetical protein	identified by glimmer%3B putative	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0240
trd_0241	trd_0241		trd_0241	250340	250693	-	hypothetical protein	identified by glimmer%3B putative	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0241
trd_0242	trd_0242		trd_0242	250690	251166	-	conserved hypothetical protein	identified by match to protein family HMM PF01878	gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0242
trd_0243	trd_0243		trd_0243	251166	251498	-	hypothetical protein	identified by glimmer%3B putative	gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0243
trd_0244	trd_0244		trd_0244	251598	252179	-	conserved hypothetical protein		gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0244
trd_0245	trd_0245		trd_0245	252176	253030	-	Amidohydrolase family	identified by match to protein family HMM PF04909	gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0245
trd_0246	trd_0246		trd_0246	253002	254018	-	D-threo-aldose 1-dehydrogenase	identified by match to protein family HMM PF00248	gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0246
trd_0247	trd_0247		trd_0247	254015	254395	-	Protein of unknown function (DUF718) superfamily	identified by match to protein family HMM PF05336	gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0247
trd_0248	trd_0248		trd_0248	254409	255161	-	putative dehydrogenase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF08659	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0248
trd_0249	trd_0249		trd_0249	255181	256206	-	inner membrane ABC transporter permease protein ycjP	identified by match to protein family HMM PF00528	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0249
trd_0250	trd_0250		trd_0250	256217	257395	-	transporter	identified by match to protein family HMM PF00528	gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0250
trd_0251	trd_0251		trd_0251	257418	258953	-	putative ABC transporter solute-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01409	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0251
trd_0252	trd_0252		trd_0252	258950	259777	-	transcriptional regulator%2C IclR family%2C C-terminal domain protein	identified by match to protein family HMM PF01614%3B match to protein family HMM PF09339	gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0252
trd_0253	trd_0253		trd_0253	259996	260124	+	hypothetical protein	identified by glimmer%3B putative	gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0253
trd_0254	trd_0254		trd_0254	260372	261127	-	conserved hypothetical protein		gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0254
trd_0255	trd_0255		trd_0255	261743	261919	-	hypothetical protein	identified by glimmer%3B putative	gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0255
trd_0256	trd_0256		trd_0256	261926	262222	-	hypothetical protein	identified by glimmer%3B putative	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0256
trd_0257	trd_0257		trd_0257	262924	263499	+	putative amino acid ABC transporter%2C periplasmic amino-acid binding protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0257
trd_0258	trd_0258		trd_0258	263545	263673	-	hypothetical protein	identified by glimmer%3B putative	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0258
trd_0259	trd_0259		trd_0259	263731	263964	+	putative ABC transport system%2C substrate-binding protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0259
trd_0260	trd_0260		trd_0260	264320	265780	+	glycolate oxidase subunit glcD	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913	gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0260
trd_0261	trd_0261		trd_0261	265790	267085	+	glycolate oxidase subunit glcE	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913	gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0261
trd_0262	trd_0262		trd_0262	267107	268456	+	4Fe-4S ferredoxin%2C iron-sulfur binding:Protein of unknown function%2C cysteine-rich region	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02754	gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0262
trd_0263	trd_0263		trd_0263	268496	269674	+	hypothetical protein	identified by glimmer%3B putative	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0263
trd_0264	trd_0264		trd_0264	269677	271650	+	acylamino-acid-releasing enzyme (ec) (acyl-peptide hydrolase) (aph)	identified by match to protein family HMM PF00326%3B match to protein family HMM PF01738%3B match to protein family HMM PF07676	gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0264
trd_0265	trd_0265		trd_0265	271657	272916	-	putative nuclease SbcCD%2C D subunit subfamily	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00619	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0265
trd_0266	trd_0266		trd_0266	272933	274558	-	Domain of unknown function domain protein	identified by match to protein family HMM PF01935	gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0266
trd_0267	trd_0267		trd_0267	274641	276347	+	probable two component sensor kinase	identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF07568	gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0267
trd_0268	trd_0268		trd_0268	276447	277205	+	putative short chain dehydrogenase	identified by match to protein family HMM PF00106	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0268
trd_0269	trd_0269		trd_0269	277218	278267	-	putative aminopeptidase from family M42	identified by match to protein family HMM PF01546%3B match to protein family HMM PF05343	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0269
trd_0270	trd_0270		trd_0270	278471	278995	+	hypothetical protein	identified by glimmer%3B putative	gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0270
trd_0271	trd_0271		trd_0271	279132	279254	+	hypothetical protein	identified by glimmer%3B putative	gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0271
trd_0272	trd_0272		trd_0272	279298	280035	+	macrolide-specific ABC-type efflux carrier	identified by match to protein family HMM PF00005	gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0272
trd_0273	trd_0273		trd_0273	280042	283005	+	putative ABC transport system integral membrane protein	identified by match to protein family HMM PF02687	gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0273
trd_0274	trd_0274		trd_0274	283014	284168	+	putative membrane protein	identified by match to protein family HMM PF07907	gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0274
trd_0275	trd_0275		trd_0275	284180	284518	+	methylated-DNA-[protein]-cysteine S-methyltransferase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0275
trd_0276	trd_0276		trd_0276	284595	284711	+	methylated-DNA--protein-cysteine methyltransferase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0276
trd_0277	trd_0277		trd_0277	284720	285475	-	putative integral membrane protein	identified by match to protein family HMM PF01694	gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0277
trd_0278	trd_0278		trd_0278	285545	285820	-	hypothetical protein	identified by glimmer%3B putative	gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0278
trd_0279	trd_0279		trd_0279	285848	285976	+	hypothetical protein	identified by glimmer%3B putative	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0279
trd_0280	trd_0280		trd_0280	286116	286829	-	phosphoglycolate phosphatase	identified by match to protein family HMM PF00702	gene	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0280
trd_0281	trd_0281		trd_0281	286829	288175	-	peptidase%2C M20/M25/M40 family	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0281
trd_0282	trd_0282		trd_0282	288172	289101	-	putative integral membrane protein	identified by match to protein family HMM PF00892	gene	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0282
trd_0283	trd_0283		trd_0283	289788	290636	-	beta-lactamase-like protein	identified by match to protein family HMM PF00753	gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0283
trd_0284	trd_0284		trd_0284	289333	289791	+	curved DNA-binding protein	identified by match to protein family HMM PF00226	gene	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0284
trd_0285	trd_0285		trd_0285	291565	292383	-	enoyl-CoA hydratase/isomerase family protein	identified by match to protein family HMM PF00378	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0285
trd_0286	trd_0286		trd_0286	290753	291568	+	putative lipoprotein		gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0286
trd_0287	trd_0287		trd_0287	292603	293775	+	hypothetical protein	identified by glimmer%3B putative	gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0287
trd_0288	trd_0288		trd_0288	293821	295017	+	hypothetical protein	identified by glimmer%3B putative	gene	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0288
trd_0289	trd_0289		trd_0289	294804	295229	+	bkrf1 encodes ebna-1 protein-like protein		gene	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0289
trd_0290	trd_0290		trd_0290	295418	295493	-	tRNA-Gly		tRNA	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0290
trd_0291	trd_0291		trd_0291	295993	296068	+	tRNA-Ala		tRNA	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0291
trd_0292	trd_0292		trd_0292	296156	296428	+	hypothetical protein	identified by glimmer%3B putative	gene	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0292
trd_0293	trd_0293		trd_0293	296495	298453	-	metalloprotease FtsH	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0293
trd_0294	trd_0294		trd_0294	298529	298705	-	hypothetical protein	identified by glimmer%3B putative	gene	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0294
trd_0295	trd_0295		trd_0295	298788	300875	-	putative bifunctional protein tilS/hprT	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00156%3B match to protein family HMM PF01171%3B match to protein family HMM TIGR01203%3B match to protein family HMM TIGR02432%3B match to protein family HMM TIGR02433	gene	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0295
trd_0296	trd_0296		trd_0296	300849	300923	-	tRNA-Met		tRNA	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0296
trd_0297	trd_0297		trd_0297	301208	302023	-	oxidoreductase%2C short-chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0297
trd_0298	trd_0298		trd_0298	302041	302862	-	putative 3-oxoacyl-(acyl carrier protein) reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0298
trd_0299	trd_0299		trd_0299	303248	304294	-	conserved hypothetical protein		gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0299
trd_0300	trd_0300		trd_0300	304272	304841	-		conserved hypothetical protein%3B an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	pseudogene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0300
trd_0301	trd_0301		trd_0301	304841	305113	-	hypothetical protein	identified by glimmer%3B putative	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0301
trd_0302	trd_0302		trd_0302	305169	305861	-	3-oxoadipate CoA-succinyl transferase beta subunit	identified by match to protein family HMM PF01144%3B match to protein family HMM TIGR02428	gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0302
trd_0303	trd_0303		trd_0303	305873	306571	-	IpsJ protein	identified by match to protein family HMM PF01144%3B match to protein family HMM TIGR02429	gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0303
trd_0304	trd_0304		trd_0304	306683	306796	+	hypothetical protein	identified by glimmer%3B putative	gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0304
trd_0305	trd_0305		trd_0305	306839	309154	+	ATP-dependent DNA helicase pcrA	identified by match to protein family HMM PF00580	gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0305
trd_0306	trd_0306	ppdK	ppdK	309221	311869	+	pyruvate%2C phosphate dikinase	identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01828	gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0306
trd_0307	trd_0307		trd_0307	312107	313069	+	putative aromatic metabolite ABC transporter	identified by match to protein family HMM PF00903	gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0307
trd_0308	trd_0308		trd_0308	313147	313764	-	superoxide dismutase (Mn)	identified by match to protein family HMM PF00081%3B match to protein family HMM PF02777	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0308
trd_0309	trd_0309		trd_0309	314011	315609	-	biuret hydrolase	identified by match to protein family HMM PF01425	gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0309
trd_0310	trd_0310		trd_0310	316419	316862	-	OsmC-like protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF02566	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0310
trd_0311	trd_0311		trd_0311	315703	316428	+	probable transferase protein		gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0311
trd_0312	trd_0312		trd_0312	316986	317900	-	putative halocarboxylic acid dehalogenase DehI		gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0312
trd_0313	trd_0313		trd_0313	318057	319172	+	putative conserved protein		gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0313
trd_0314	trd_0314		trd_0314	319193	320332	+	radical SAM enzyme%2C Cfr family	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048	gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0314
trd_0315	trd_0315		trd_0315	320345	321565	+	conserved hypothetical protein TIGR00299	identified by match to protein family HMM PF01969%3B match to protein family HMM TIGR00299	gene	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0315
trd_0316	trd_0316		trd_0316	321726	322550	+	ZIP zinc transporter family protein	identified by match to protein family HMM PF02535	gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0316
trd_0317	trd_0317		trd_0317	323225	324049	+	ABC transporter ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0317
trd_0318	trd_0318		trd_0318	324046	324879	+	putative ABC transport proteins%2C inner membrane component	identified by match to protein family HMM PF00528	gene	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0318
trd_0319	trd_0319		trd_0319	324876	325067	+	hypothetical protein	identified by glimmer%3B putative	gene	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0319
trd_0320	trd_0320		trd_0320	325771	325884	-	hypothetical protein	identified by glimmer%3B putative	gene	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0320
trd_0321	trd_0321		trd_0321	326254	326460	-	conserved hypothetical protein		gene	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0321
trd_0322	trd_0322		trd_0322	326592	327587	-	catechol 2%2C3-dioxygenase	identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR03211	gene	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0322
trd_0323	trd_0323		trd_0323	327744	329000	-	pyoverdin chromophore biosynthetic protein pvcC	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF03241	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0323
trd_0324	trd_0324		trd_0324	328997	329305	-	pyoverdin chromophore biosynthetic protein pvcC	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0324
trd_0325	trd_0325		trd_0325	329372	329521	-	hypothetical protein	identified by glimmer%3B putative	gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0325
trd_0326	trd_0326		trd_0326	329563	329775	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0326
trd_0327	trd_0327		trd_0327	329757	330116	-	putative membrane protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0327
trd_0328	trd_0328		trd_0328	330454	331647	+	transcriptional regulator%2C ArsR family protein	identified by match to protein family HMM PF01022%3B match to protein family HMM PF01978%3B match to protein family HMM PF08279	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0328
trd_0329	trd_0329		trd_0329	332689	333156	-	hypothetical protein	identified by glimmer%3B putative	gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0329
trd_0330	trd_0330		trd_0330	333169	333864	-	succinate dehydrogenase iron-sulfur protein	identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR00384	gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0330
trd_0331	trd_0331	nadB	nadB	333866	335596	-	succinate dehydrogenase%2C flavoprotein subunit	identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01812%3B match to protein family HMM TIGR01816	gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0331
trd_0332	trd_0332		trd_0332	335600	336013	-	succinate dehydrogenase%2C membrane subunit		gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0332
trd_0333	trd_0333		trd_0333	336032	336451	-	succinate dehydrogenase%2C cytochrome subunit	identified by match to protein family HMM PF01127%3B match to protein family HMM TIGR02970	gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0333
trd_0334	trd_0334		trd_0334	336641	337762	+	peptidase%2C M20/M25/M40 family	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0334
trd_0335	trd_0335		trd_0335	337789	340737	+	exonuclease family	identified by match to protein family HMM PF00929	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0335
trd_0336	trd_0336	glpX	glpX	340718	341725	+	fructose-1%2C6-bisphosphatase%2C class II	identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0336
trd_0337	trd_0337	rho	rho	342050	343354	+	transcription termination factor Rho	identified by match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM TIGR00767	gene	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0337
trd_0338	trd_0338		trd_0338	343394	343816	+	hypothetical protein	identified by glimmer%3B putative	gene	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0338
trd_0339	trd_0339		trd_0339	343822	344580	-	putative hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0339
trd_0340	trd_0340		trd_0340	344668	344865	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0340
trd_0341	trd_0341		trd_0341	346339	347136	-	conserved hypothetical protein TIGR00046	identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0341
trd_0342	trd_0342		trd_0342	344889	346388	+	predicted ABC-type ATPase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0342
trd_0343	trd_0343	prmA	prmA	347133	348053	-	ribosomal protein L11 methyltransferase	identified by match to protein family HMM PF05175%3B match to protein family HMM PF06325%3B match to protein family HMM PF08241%3B match to protein family HMM TIGR00406	gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0343
trd_0344	trd_0344		trd_0344	348058	349050	-	putative glucose-1-phosphate thymidylyltransferase	identified by match to protein family HMM PF00483	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0344
trd_0345	trd_0345		trd_0345	349225	349301	-	tRNA-Glu		tRNA	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0345
trd_0346	trd_0346		trd_0346	349381	349992	+	conserved hypothetical protein		gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0346
trd_0347	trd_0347	coaBC	coaBC	349970	351181	+	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	identified by match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521	gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0347
trd_0348	trd_0348		trd_0348	351178	351519	+	hypothetical protein	identified by glimmer%3B putative	gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0348
trd_0349	trd_0349		trd_0349	351648	351770	+	hypothetical protein	identified by glimmer%3B putative	gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0349
trd_0350	trd_0350		trd_0350	351819	352988	+	putative peptide chain release factor subunit 1		gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0350
trd_0351	trd_0351		trd_0351	352985	353893	+	Diacylglycerol kinase catalytic domain (presumed) protein	identified by match to protein family HMM PF00781	gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0351
trd_0352	trd_0352		trd_0352	353916	354782	-	conserved hypothetical protein		gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0352
trd_0353	trd_0353		trd_0353	354793	355554	-	hypothetical protein	identified by glimmer%3B putative	gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0353
trd_0354	trd_0354	miaB	miaB	355758	357134	+	tRNA-i(6)A37 thiotransferase enzyme MiaB	identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574	gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0354
trd_0355	trd_0355		trd_0355	357159	358052	+	TPR domain protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0355
trd_0356	trd_0356		trd_0356	358117	358383	-	hypothetical protein	identified by glimmer%3B putative	gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0356
trd_0357	trd_0357		trd_0357	358425	359237	-	Protein of unknown function superfamily	identified by match to protein family HMM PF01887	gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0357
trd_0358	trd_0358	ggt	ggt	359250	360881	-	gamma-glutamyltransferase	identified by match to protein family HMM PF01019%3B match to protein family HMM TIGR00066	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0358
trd_0359	trd_0359		trd_0359	360878	361528	-	molybdopterin-guanine dinucleotide biosynthesis protein		gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0359
trd_0360	trd_0360		trd_0360	361887	362201	+	SWIM zinc finger domain protein	identified by match to protein family HMM PF04434	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0360
trd_0361	trd_0361		trd_0361	362492	363154	+	conserved hypothetical protein		gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0361
trd_0362	trd_0362		trd_0362	363159	364061	-	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0362
trd_0363	trd_0363		trd_0363	364325	365935	+	probable acetolactate synthase large subunit	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0363
trd_0364	trd_0364		trd_0364	366056	366169	+	hypothetical protein	identified by glimmer%3B putative	gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0364
trd_0365	trd_0365		trd_0365	366185	367873	+	2-isopropylmalate synthase/homocitrate synthase family protein	identified by match to protein family HMM PF00682%3B match to protein family HMM PF08502%3B match to protein family HMM TIGR00977	gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0365
trd_0366	trd_0366	asd	asd	367919	368971	-	aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR00978	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0366
trd_0367	trd_0367		trd_0367	369259	370257	+	homoserine dehydrogenase	identified by match to protein family HMM PF00742%3B match to protein family HMM PF03447	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0367
trd_0368	trd_0368	metX	metX	370374	371618	-	homoserine O-acetyltransferase	identified by match to protein family HMM PF00561%3B match to protein family HMM TIGR01392	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0368
trd_0369	trd_0369		trd_0369	371849	372949	-	putative AttH		gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0369
trd_0370	trd_0370		trd_0370	372950	375160	-	putative membrane protein mmpL3	identified by match to protein family HMM PF03176	gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0370
trd_0371	trd_0371		trd_0371	375234	376826	-	trehalose-6-phosphate synthase	identified by match to protein family HMM PF00982	gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0371
trd_0372	trd_0372		trd_0372	376818	376940	+	hypothetical protein	identified by glimmer%3B putative	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0372
trd_0373	trd_0373		trd_0373	377108	377581	-	halocyanin precursor-like protein	identified by match to protein family HMM PF00127%3B match to protein family HMM TIGR01409	gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0373
trd_0374	trd_0374		trd_0374	377712	378350	-	polysaccharide deacetylase	identified by match to protein family HMM PF01522	gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0374
trd_0375	trd_0375		trd_0375	378367	378576	+	hypothetical protein	identified by glimmer%3B putative	gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0375
trd_0376	trd_0376		trd_0376	378659	379072	-	Domain of unknown function domain protein	identified by match to protein family HMM PF01883	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0376
trd_0377	trd_0377		trd_0377	379069	379449	-	SUF system FeS assembly protein%2C NifU family	identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR01994	gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0377
trd_0378	trd_0378		trd_0378	379472	380731	-	cysteine desulfurase	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01979	gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0378
trd_0379	trd_0379	sufD	sufD	380728	382065	-	FeS assembly protein SufD	identified by match to protein family HMM PF01458%3B match to protein family HMM TIGR01981	gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0379
trd_0380	trd_0380	sufB	sufB	382121	383536	-	FeS assembly protein SufB	identified by match to protein family HMM PF01458%3B match to protein family HMM TIGR01980	gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0380
trd_0381	trd_0381	sufC	sufC	383566	384393	-	FeS assembly ATPase SufC	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01978	gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0381
trd_0382	trd_0382		trd_0382	384466	384897	-	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0382
trd_0383	trd_0383		trd_0383	385481	385852	-	hypothetical protein	identified by glimmer%3B putative	gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0383
trd_0384	trd_0384		trd_0384	385014	385484	+	NifU family protein	identified by match to protein family HMM PF01592	gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0384
trd_0385	trd_0385		trd_0385	385915	386487	-	putative DNA polymerase III%2C epsilon chain (EC )	identified by match to protein family HMM PF00929	gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0385
trd_0386	trd_0386		trd_0386	386502	387188	-	metallo-beta-lactamase domain protein	identified by match to protein family HMM PF00753	gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0386
trd_0387	trd_0387		trd_0387	387231	388841	-	Amidohydrolase family	identified by match to protein family HMM PF07969	gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0387
trd_0388	trd_0388		trd_0388	388866	390470	-	Amidohydrolase family	identified by match to protein family HMM PF07969	gene	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0388
trd_0389	trd_0389		trd_0389	390465	390638	+	hypothetical protein	identified by glimmer%3B putative	gene	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0389
trd_0390	trd_0390		trd_0390	390688	391527	-	putative saccharide deacetylase%2C slightly	identified by match to protein family HMM PF01522	gene	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0390
trd_0391	trd_0391		trd_0391	391527	392723	-	cysteine desulfurase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00266%3B match to protein family HMM PF01053	gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0391
trd_0392	trd_0392		trd_0392	392910	394118	-	methionine gamma-lyase	identified by match to protein family HMM PF01053%3B match to protein family HMM PF01212	gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0392
trd_0393	trd_0393		trd_0393	394095	394280	+	hypothetical protein	identified by glimmer%3B putative	gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0393
trd_0394	trd_0394		trd_0394	394307	396139	+	putative ABC transporter%2C substrate binding protein (oligopeptide)	identified by match to protein family HMM PF00496	gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0394
trd_0395	trd_0395		trd_0395	396199	397209	+	oligopeptide transport system permease protein oppB	identified by match to protein family HMM PF00528	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0395
trd_0396	trd_0396		trd_0396	397223	398212	+	oligopeptide transport system permease protein appC	identified by match to protein family HMM PF00528	gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0396
trd_0397	trd_0397		trd_0397	398238	398369	-	hypothetical protein	identified by glimmer%3B putative	gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0397
trd_0398	trd_0398	thiD	thiD	398445	399278	+	phosphomethylpyrimidine kinase	identified by match to protein family HMM PF08543%3B match to protein family HMM TIGR00097	gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0398
trd_0399	trd_0399	thiG	thiG	399271	400080	+	Thiazole biosynthesis protein ThiG	identified by match to protein family HMM PF05690	gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0399
trd_0400	trd_0400	thiE	thiE	400091	400759	+	thiamine-phosphate pyrophosphorylase	identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00693	gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0400
trd_0401	trd_0401	thiE	thiE	400763	401389	+	thiamine-phosphate pyrophosphorylase	identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00693	gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0401
trd_0402	trd_0402	thiS	thiS	401386	401592	+	thiamine biosynthesis protein ThiS	identified by match to protein family HMM PF02597%3B match to protein family HMM PF02824%3B match to protein family HMM TIGR01683	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0402
trd_0403	trd_0403		trd_0403	401646	402005	-	putative 6-O-methylguanine DNA methyltransferase family protein	identified by match to protein family HMM PF01035%3B match to protein family HMM TIGR00589	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0403
trd_0404	trd_0404		trd_0404	402010	402396	-	putative membrane protein		gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0404
trd_0405	trd_0405	secA	secA	402472	405117	+	preprotein translocase%2C SecA subunit	identified by match to protein family HMM PF00271%3B match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963	gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0405
trd_0406	trd_0406		trd_0406	405428	406129	+	glycerol uptake facilitator protein	identified by match to protein family HMM PF00230	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0406
trd_0407	trd_0407		trd_0407	406434	408200	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0407
trd_0408	trd_0408		trd_0408	408270	408974	-	Protein of unknown function (DUF461) family	identified by match to protein family HMM PF04314	gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0408
trd_0409	trd_0409		trd_0409	408977	409597	-	putative SCO1/SenC family protein	identified by match to protein family HMM PF00578%3B match to protein family HMM PF02630	gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0409
trd_0410	trd_0410		trd_0410	409609	410256	-	hypothetical protein	identified by glimmer%3B putative	gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0410
trd_0411	trd_0411		trd_0411	410304	410660	-	lustrin A		gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0411
trd_0412	trd_0412		trd_0412	410967	411905	-	Luciferase-like monooxygenase superfamily	identified by match to protein family HMM PF00296%3B match to protein family HMM TIGR03560	gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0412
trd_0413	trd_0413	dapB	dapB	412021	412797	-	dihydrodipicolinate reductase	identified by match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036	gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0413
trd_0414	trd_0414	dapA	dapA	412797	413705	-	dihydrodipicolinate synthase	identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674	gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0414
trd_0415	trd_0415		trd_0415	413849	413971	-	hypothetical protein	identified by glimmer%3B putative	gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0415
trd_0416	trd_0416		trd_0416	413704	413859	+	hypothetical protein	identified by glimmer%3B putative	gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0416
trd_0417	trd_0417		trd_0417	414082	414807	-	conserved protein	identified by match to protein family HMM PF03483	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0417
trd_0418	trd_0418		trd_0418	414826	416133	-	putative glycosyltransferase	identified by match to protein family HMM PF00534	gene	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0418
trd_0419	trd_0419		trd_0419	416215	416291	-	tRNA-Arg		tRNA	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0419
trd_0420	trd_0420		trd_0420	416393	416467	+	tRNA-Pro		tRNA	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0420
trd_0421	trd_0421		trd_0421	417929	419779	-	DNA primase	identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM PF08275%3B match to protein family HMM TIGR01391	gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0421
trd_0422	trd_0422	selA	selA	416518	417936	+	L-seryl-tRNA selenium transferase	identified by match to protein family HMM PF01053%3B match to protein family HMM PF03841%3B match to protein family HMM TIGR00474	gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0422
trd_0423	trd_0423		trd_0423	419784	420866	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR01353	gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0423
trd_0424	trd_0424		trd_0424	420997	422406	-	putative aminomethyltransferase	identified by match to protein family HMM PF01571	gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0424
trd_0425	trd_0425		trd_0425	422786	422911	+	conserved hypothetical protein		gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0425
trd_0426	trd_0426		trd_0426	422869	423045	+	hypothetical protein	identified by glimmer%3B putative	gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0426
trd_0427	trd_0427	uvrC	uvrC	423042	424919	+	excinuclease ABC%2C C subunit	identified by match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM PF08459%3B match to protein family HMM TIGR00194	gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0427
trd_0428	trd_0428		trd_0428	424916	425545	+	Sua5/YciO/YrdC/YwlC family protein	identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057	gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0428
trd_0429	trd_0429		trd_0429	425631	426896	+	putative UDP-glucuronosyltransferase		gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0429
trd_0430	trd_0430		trd_0430	426893	427753	+	putative membrane protein		gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0430
trd_0431	trd_0431		trd_0431	427750	428031	+	hypothetical protein	identified by glimmer%3B putative	gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0431
trd_0432	trd_0432		trd_0432	428047	429399	+	ATPase%2C aaa family	identified by match to protein family HMM PF00004%3B match to protein family HMM PF07728	gene	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0432
trd_0433	trd_0433	rph	rph	429396	430127	+	ribonuclease PH	identified by match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM TIGR01966	gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0433
trd_0434	trd_0434	hisB	hisB	430134	430742	-	imidazoleglycerol-phosphate dehydratase	identified by match to protein family HMM PF00475	gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0434
trd_0435	trd_0435	hisC	hisC	430766	431848	-	histidinol-phosphate aminotransferase	identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141	gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0435
trd_0436	trd_0436		trd_0436	431933	433027	+	beta-lactamase	identified by match to protein family HMM PF00144%3B match to protein family HMM PF00768	gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0436
trd_0437	trd_0437		trd_0437	433028	433876	+	possible pseudouridine synthase	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093	gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0437
trd_0438	trd_0438	cmk	cmk	433800	434546	+	cytidylate kinase	identified by match to protein family HMM PF02224%3B match to protein family HMM TIGR00017	gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0438
trd_0439	trd_0439		trd_0439	434503	435264	+	Acyltransferase domain protein	identified by match to protein family HMM PF01553	gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0439
trd_0440	trd_0440		trd_0440	435753	436961	-	Domain of unknown function (DUF362) family	identified by match to protein family HMM PF04015	gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0440
trd_0441	trd_0441		trd_0441	437184	438695	+	penicillin-binding protein dacF precursor	identified by match to protein family HMM PF00768	gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0441
trd_0442	trd_0442		trd_0442	438760	439116	+	HspR	identified by match to protein family HMM PF00376	gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0442
trd_0443	trd_0443		trd_0443	439167	441779	+	chaperone clpB 1	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0443
trd_0444	trd_0444		trd_0444	441842	441970	+	hypothetical protein	identified by glimmer%3B putative	gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0444
trd_0445	trd_0445		trd_0445	441988	442212	+	conserved hypothetical protein		gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0445
trd_0446	trd_0446		trd_0446	442267	443244	+	conserved hypothetical protein		gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0446
trd_0447	trd_0447		trd_0447	443334	444425	-	putative Methionine synthase%2C vitamin-B12 independent	identified by match to protein family HMM PF01717	gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0447
trd_0448	trd_0448		trd_0448	444837	445871	+	alcohol dehydrogenase%2C class III	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0448
trd_0449	trd_0449	aroF	aroF	446227	447270	+	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01361	gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0449
trd_0450	trd_0450		trd_0450	447272	448252	-	hypothetical protein	identified by glimmer%3B putative	gene	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0450
trd_0451	trd_0451		trd_0451	449544	450359	-	conserved hypothetical protein		gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0451
trd_0452	trd_0452		trd_0452	448375	449580	+	glycosyl transferases group 1	identified by match to protein family HMM PF00534	gene	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0452
trd_0453	trd_0453		trd_0453	450364	450756	-	hypothetical protein	identified by glimmer%3B putative	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0453
trd_0454	trd_0454		trd_0454	450728	450964	-	hypothetical protein	identified by glimmer%3B putative	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0454
trd_0455	trd_0455		trd_0455	451014	451928	+	malyl-CoA lyase	identified by match to protein family HMM PF03328	gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0455
trd_0456	trd_0456		trd_0456	452020	452238	+	hypothetical protein	identified by glimmer%3B putative	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0456
trd_0457	trd_0457		trd_0457	452695	453408	-	redox-sensing transcriptional repressor rex	identified by match to protein family HMM PF02629%3B match to protein family HMM PF06971	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0457
trd_0458	trd_0458		trd_0458	452280	452738	+	hypothetical protein	identified by glimmer%3B putative	gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0458
trd_0459	trd_0459		trd_0459	453510	455270	-	glutamine-dependent NAD(+) synthetase	identified by match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00552	gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0459
trd_0460	trd_0460	recN	recN	455404	457146	+	DNA repair protein RecN	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00634	gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0460
trd_0461	trd_0461		trd_0461	457207	457512	+	conserved hypothetical protein TIGR00103	identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103	gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0461
trd_0462	trd_0462		trd_0462	457522	458490	+	putative oxidoreductase	identified by match to protein family HMM PF00296%3B match to protein family HMM TIGR03560	gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0462
trd_0463	trd_0463		trd_0463	458554	460119	-	flavin containing amine oxidase	identified by match to protein family HMM PF01266	gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0463
trd_0464	trd_0464		trd_0464	460476	461069	-	putative cytochrome c subfamily	identified by match to protein family HMM PF00034	gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0464
trd_0465	trd_0465		trd_0465	461093	461632	-	conserved hypothetical protein		gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0465
trd_0466	trd_0466		trd_0466	461666	463039	-	probable molybdopterin oxidoreductase%2C membrane subunit	identified by match to protein family HMM PF03916	gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0466
trd_0467	trd_0467		trd_0467	463085	464479	-	putative membrane protein		gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0467
trd_0468	trd_0468		trd_0468	464509	465234	-	oxidoreductase%2C iron-sulfur cluster-binding subunit	identified by match to protein family HMM PF00037	gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0468
trd_0469	trd_0469		trd_0469	465271	467526	-	putative 4Fe-4S ferredoxin%2C iron-sulfur binding	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568	gene	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0469
trd_0470	trd_0470		trd_0470	467567	468100	-	chaperone protein HtpG		gene	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0470
trd_0471	trd_0471		trd_0471	468159	468449	-	hypothetical protein	identified by glimmer%3B putative	gene	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0471
trd_0472	trd_0472		trd_0472	468663	469055	+	hypothetical protein	identified by glimmer%3B putative	gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0472
trd_0473	trd_0473		trd_0473	469082	471022	-	hypothetical protein	identified by glimmer%3B putative	gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0473
trd_0474	trd_0474		trd_0474	471206	472387	-	putative membrane protein		gene	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0474
trd_0475	trd_0475		trd_0475	472399	473826	-	hypothetical protein	identified by glimmer%3B putative	gene	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0475
trd_0476	trd_0476		trd_0476	474162	475004	+	transketolase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00456	gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0476
trd_0477	trd_0477		trd_0477	475001	475963	+	Transketolase%2C pyridine binding domain protein	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0477
trd_0478	trd_0478	rpiA	rpiA	475966	476679	+	ribose 5-phosphate isomerase A	identified by match to protein family HMM PF06026%3B match to protein family HMM TIGR00021	gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0478
trd_0479	trd_0479		trd_0479	478358	478855	-	putative integral membrane protein		gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0479
trd_0480	trd_0480		trd_0480	476967	478361	+	LysM domain protein	identified by match to protein family HMM PF01476	gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0480
trd_0481	trd_0481		trd_0481	478881	479021	+	hypothetical protein	identified by glimmer%3B putative	gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0481
trd_0482	trd_0482		trd_0482	479213	480406	+	NAD(P) transhydrogenase subunit alpha part 1	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01262%3B match to protein family HMM PF05222	gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0482
trd_0483	trd_0483		trd_0483	480403	480756	+	NAD(P) transhydrogenase%2C alpha-2 subunit		gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0483
trd_0484	trd_0484		trd_0484	480753	482156	+	NAD(P) transhydrogenase%2C beta subunit	identified by match to protein family HMM PF02233	gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0484
trd_0485	trd_0485		trd_0485	482356	482514	-	hypothetical protein	identified by glimmer%3B putative	gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0485
trd_0486	trd_0486		trd_0486	482607	483002	+	conserved hypothetical protein	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0486
trd_0487	trd_0487		trd_0487	483080	484351	+	carboxyl-terminal processing protease	identified by match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0487
trd_0488	trd_0488		trd_0488	484378	484782	+	hypothetical conserved protein	identified by match to protein family HMM PF03745	gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0488
trd_0489	trd_0489		trd_0489	484795	485535	+	uncharacterized proteins%2C LmbE homolog	identified by match to protein family HMM PF02585	gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0489
trd_0490	trd_0490		trd_0490	485878	486864	+	putative membrane protein	identified by match to protein family HMM PF03706%3B match to protein family HMM TIGR00374	gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0490
trd_0491	trd_0491		trd_0491	486861	487697	+	putative undecaprenol kinase	identified by match to protein family HMM PF02673%3B match to protein family HMM TIGR00753	gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0491
trd_0492	trd_0492		trd_0492	487703	489337	-	putative transport protein	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711	gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0492
trd_0493	trd_0493		trd_0493	489566	489910	-	protein csaA	identified by match to protein family HMM PF01588%3B match to protein family HMM TIGR02222	gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0493
trd_0494	trd_0494		trd_0494	489981	490727	+	hydrolase%2C NUDIX family protein	identified by match to protein family HMM PF00293	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0494
trd_0495	trd_0495	aceB	aceB	490918	492486	-	malate synthase A	identified by match to protein family HMM PF01274%3B match to protein family HMM TIGR01344	gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0495
trd_0496	trd_0496		trd_0496	492595	493773	-	isocitrate lyase	identified by match to protein family HMM PF00463	gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0496
trd_0497	trd_0497		trd_0497	494099	494998	+	RuBisCO operon transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0497
trd_0498	trd_0498		trd_0498	495002	495841	-	Protein of unknown function superfamily	identified by match to protein family HMM PF01904	gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0498
trd_0499	trd_0499		trd_0499	495863	496153	-	hypothetical protein	identified by glimmer%3B putative	gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0499
trd_0500	trd_0500		trd_0500	496356	497057	+		glutaredoxin related protein%3B an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM TIGR02187	pseudogene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0500
trd_0501	trd_0501		trd_0501	497077	498597	+	P49 secreted protein		gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0501
trd_0502	trd_0502	ribD	ribD	498859	500007	+	riboflavin biosynthesis protein RibD	identified by match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0502
trd_0503	trd_0503	ribE	ribE	500004	500672	+	riboflavin synthase%2C alpha subunit	identified by match to protein family HMM PF00677%3B match to protein family HMM TIGR00187	gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0503
trd_0504	trd_0504		trd_0504	500669	501922	+	riboflavin biosynthesis protein ribA	identified by match to protein family HMM PF00925%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00505%3B match to protein family HMM TIGR00506	gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0504
trd_0505	trd_0505	ribH	ribH	501919	502434	+	6%2C7-dimethyl-8-ribityllumazine synthase	identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114	gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0505
trd_0506	trd_0506		trd_0506	503041	504690	+	serine-type D-Ala-D-Ala carboxypeptidase	identified by match to protein family HMM PF00768	gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0506
trd_0507	trd_0507		trd_0507	504765	505607	-	MitC	identified by match to protein family HMM PF02585	gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0507
trd_0508	trd_0508	selB	selB	505582	507474	-	selenocysteine-specific translation elongation factor	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM PF09106%3B match to protein family HMM PF09107%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00475	gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0508
trd_0509	trd_0509		trd_0509	508437	510500	-	Protein of unknown function%2C DUF255 family	identified by match to protein family HMM PF03190	gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0509
trd_0510	trd_0510		trd_0510	507559	508482	+	putative amidase	identified by match to protein family HMM PF03069	gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0510
trd_0511	trd_0511		trd_0511	510499	510849	+	hypothetical protein	identified by glimmer%3B putative	gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0511
trd_0512	trd_0512		trd_0512	511057	511686	+	conserved hypothetical protein	identified by match to protein family HMM PF07920	gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0512
trd_0513	trd_0513		trd_0513	511688	513181	+	PepB protein	identified by match to protein family HMM PF00883%3B match to protein family HMM PF02789	gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0513
trd_0514	trd_0514		trd_0514	513178	513603	+	conserved hypothetical protein TIGR00149	identified by match to protein family HMM PF01894%3B match to protein family HMM TIGR00149	gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0514
trd_0515	trd_0515		trd_0515	513593	513943	+	possible DNA binding protein	identified by match to protein family HMM PF01381	gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0515
trd_0516	trd_0516		trd_0516	514849	515475	-	methyltransferase%2C UbiE/COQ5 family	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0516
trd_0517	trd_0517		trd_0517	513967	514854	+	3-mercaptopyruvate sulfurtransferase	identified by match to protein family HMM PF00581	gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0517
trd_0518	trd_0518		trd_0518	515563	516075	+	hypothetical protein	identified by glimmer%3B putative	gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0518
trd_0519	trd_0519		trd_0519	516100	516717	+	uncharacterized domain HDIG protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0519
trd_0520	trd_0520		trd_0520	516833	518038	-	spermidine/putrescine-binding periplasmic protein precursor	identified by match to protein family HMM PF01547	gene	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0520
trd_0521	trd_0521		trd_0521	518054	518914	-	ABC-type spermidine/putrescine transport system%2C permease component II	identified by match to protein family HMM PF00528	gene	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0521
trd_0522	trd_0522		trd_0522	518911	519825	-	spermidine/putrescine transport system permease protein potB	identified by match to protein family HMM PF00528	gene	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0522
trd_0523	trd_0523		trd_0523	519844	521013	-	ATP-binding component of putrescine transport system	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402%3B match to protein family HMM TIGR01187	gene	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0523
trd_0524	trd_0524		trd_0524	521015	522469	-	folylpolyglutamate synthase	identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01499	gene	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0524
trd_0525	trd_0525		trd_0525	522541	523770	+	putative membrane protein		gene	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0525
trd_0526	trd_0526		trd_0526	523845	524936	+	Mrp	identified by match to protein family HMM PF01883	gene	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0526
trd_0527	trd_0527		trd_0527	525008	526384	+	3-oxoacyl-(acyl-carrier-protein) synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0527
trd_0528	trd_0528		trd_0528	526394	527350	+	putative agmatinase	identified by match to protein family HMM PF00491%3B match to protein family HMM TIGR01230	gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0528
trd_0529	trd_0529		trd_0529	527406	528380	+	putative agmatinase	identified by match to protein family HMM PF00491%3B match to protein family HMM TIGR01230	gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0529
trd_0530	trd_0530		trd_0530	528355	528993	+	putative aminomethyltransferase protein		gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0530
trd_0531	trd_0531		trd_0531	529000	530700	-	urease alpha subunit	identified by match to protein family HMM PF00449%3B match to protein family HMM PF01979%3B match to protein family HMM PF07969	gene	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0531
trd_0532	trd_0532	ureB	ureB	530709	531098	-	urease%2C beta subunit	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00699%3B match to protein family HMM TIGR00192	gene	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0532
trd_0533	trd_0533	ureA	ureA	531095	531391	-	urease%2C gamma subunit	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00547%3B match to protein family HMM TIGR00193	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0533
trd_0534	trd_0534		trd_0534	531388	531729	-	hypothetical protein	identified by glimmer%3B putative	gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0534
trd_0535	trd_0535		trd_0535	531774	532022	-	DNA binding domain%2C excisionase family protein	identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR01764	gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0535
trd_0536	trd_0536		trd_0536	532392	532535	+	hypothetical protein	identified by glimmer%3B putative	gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0536
trd_0537	trd_0537	rpsU	rpsU	532651	532875	+	ribosomal protein S21	identified by match to protein family HMM PF01165%3B match to protein family HMM TIGR00030	gene	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0537
trd_0538	trd_0538		trd_0538	532938	533237	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0538
trd_0539	trd_0539		trd_0539	533457	534122	-	TENA/THI-4 family	identified by match to protein family HMM PF03070	gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0539
trd_0540	trd_0540		trd_0540	534138	534782	-	TENA/THI-4 family	identified by match to protein family HMM PF03070	gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0540
trd_0541	trd_0541		trd_0541	535094	535222	+	hypothetical protein	identified by glimmer%3B putative	gene	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0541
trd_0542	trd_0542		trd_0542	535360	536136	+	glucose-1-phosphate thymidylyltransferase	identified by match to protein family HMM PF00483	gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0542
trd_0543	trd_0543	argS	argS	536149	538299	+	arginyl-tRNA synthetase	identified by match to protein family HMM PF00750%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456	gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0543
trd_0544	trd_0544		trd_0544	538319	539773	-	probable transcription regulator	identified by match to protein family HMM PF03816%3B match to protein family HMM TIGR00350	gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0544
trd_0545	trd_0545		trd_0545	539789	539911	-	hypothetical protein	identified by glimmer%3B putative	gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0545
trd_0546	trd_0546	dcd	dcd	539928	540521	+	deoxycytidine triphosphate deaminase	identified by match to protein family HMM PF00692%3B match to protein family HMM TIGR02274	gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0546
trd_0547	trd_0547		trd_0547	540528	541067	-	putative ATP:cob(I)alamin adenosyltransferase	identified by match to protein family HMM PF01923%3B match to protein family HMM TIGR00636	gene	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0547
trd_0548	trd_0548		trd_0548	541089	541949	-	ABC-2 type transporter superfamily	identified by match to protein family HMM PF01061	gene	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0548
trd_0549	trd_0549		trd_0549	541971	542192	-	multidrug ABC transporter%2C ATP-binding protein		gene	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0549
trd_0550	trd_0550		trd_0550	542961	545306	-	hypothetical protein	identified by glimmer%3B putative	gene	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0550
trd_0551	trd_0551		trd_0551	545370	545741	-	hypothetical protein	identified by glimmer%3B putative	gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0551
trd_0552	trd_0552		trd_0552	545790	545972	-	hypothetical protein	identified by glimmer%3B putative	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0552
trd_0553	trd_0553		trd_0553	546244	547323	-	putative integrase	identified by match to protein family HMM PF00589	gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0553
trd_0554	trd_0554		trd_0554	547416	548336	-	ABC-type multidrug transport system%2C ATPase component	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01188	gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0554
trd_0555	trd_0555		trd_0555	549180	549476	+	hypothetical protein	identified by glimmer%3B putative	gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0555
trd_0556	trd_0556		trd_0556	549448	549585	+	hypothetical protein	identified by glimmer%3B putative	gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0556
trd_0557	trd_0557		trd_0557	549589	550056	+	cytochrome c oxidase (bo3-type) subunit II	identified by match to protein family HMM PF00116%3B match to protein family HMM PF00127	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0557
trd_0558	trd_0558		trd_0558	550053	551741	+	cytochrome c oxidase subunit 1	identified by match to protein family HMM PF00115	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0558
trd_0559	trd_0559		trd_0559	552014	553639	-	probable acetolactate synthase large subunit	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0559
trd_0560	trd_0560		trd_0560	553862	554698	-	hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0560
trd_0561	trd_0561	sucB	sucB	554704	556023	-	2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase	identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01347	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0561
trd_0562	trd_0562	sucA	sucA	556044	558941	-	2-oxoglutarate dehydrogenase%2C E1 component	identified by match to protein family HMM PF00676%3B match to protein family HMM PF02779%3B match to protein family HMM TIGR00239	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0562
trd_0563	trd_0563		trd_0563	559017	560273	-	putative FAD binding domain	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494	gene	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0563
trd_0564	trd_0564	mgtE	mgtE	560974	562332	+	magnesium transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400	gene	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0564
trd_0565	trd_0565		trd_0565	562388	563326	+	Zn-dependent hydrolase	identified by match to protein family HMM PF00753	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0565
trd_0566	trd_0566		trd_0566	563323	564564	+	putative membrane protein	identified by match to protein family HMM PF07690	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0566
trd_0567	trd_0567		trd_0567	564693	566438	-	PHP domain protein	identified by match to protein family HMM PF02811	gene	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0567
trd_0568	trd_0568		trd_0568	564605	564730	+	hypothetical protein	identified by glimmer%3B putative	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0568
trd_0569	trd_0569		trd_0569	566444	567214	-	hypothetical protein	identified by glimmer%3B putative	gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0569
trd_0570	trd_0570		trd_0570	567553	569280	-	hypothetical protein	identified by glimmer%3B putative	gene	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0570
trd_0571	trd_0571	arcC	arcC	569414	570361	-	carbamate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00746	gene	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0571
trd_0572	trd_0572		trd_0572	570358	571818	-	Protein of unknown function (DUF1116) superfamily	identified by match to protein family HMM PF06545	gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0572
trd_0573	trd_0573		trd_0573	571841	573385	-	protein fdrA	identified by match to protein family HMM PF06263	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0573
trd_0575	trd_0575		trd_0575	573793	574644	-	hypothetical protein	identified by glimmer%3B putative	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0575
trd_0576	trd_0576		trd_0576	574627	574749	+	hypothetical protein	identified by glimmer%3B putative	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0576
trd_0577	trd_0577		trd_0577	574761	575645	+	carbon monoxide dehydrogenase medium chain	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0577
trd_0578	trd_0578		trd_0578	575642	576136	+	aldehyde oxidase small subunit	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0578
trd_0579	trd_0579		trd_0579	576156	578531	+	oxidoreductase%2C large chain	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0579
trd_0580	trd_0580		trd_0580	578641	579435	+	putative polyketide cyclase	identified by match to protein family HMM PF04199	gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0580
trd_0581	trd_0581		trd_0581	579488	580309	+	putative polyketide cyclase	identified by match to protein family HMM PF04199	gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0581
trd_0582	trd_0582		trd_0582	580312	581298	+	NAD-dependent alcohol dehydrogenase	identified by match to protein family HMM PF08240%3B match to protein family HMM TIGR02822	gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0582
trd_0583	trd_0583		trd_0583	581300	583921	-	cation-transport ATPase%2C E1-E2 family	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0583
trd_0584	trd_0584		trd_0584	584210	584455	-	putative 4-hydroxybenzoyl-CoA thioesterase		gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0584
trd_0585	trd_0585		trd_0585	584572	584694	-	hypothetical protein	identified by glimmer%3B putative	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0585
trd_0586	trd_0586		trd_0586	585226	585301	+	tRNA-Thr		tRNA	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0586
trd_0587	trd_0587		trd_0587	585305	585379	+	tRNA-Thr		tRNA	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0587
trd_0588	trd_0588		trd_0588	585669	585812	-	hypothetical protein	identified by glimmer%3B putative	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0588
trd_0589	trd_0589		trd_0589	585837	585992	-	putative integrase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0589
trd_0590	trd_0590		trd_0590	586598	586717	-	hypothetical protein	identified by glimmer%3B putative	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0590
trd_0591	trd_0591		trd_0591	587027	587173	-	hypothetical protein	identified by glimmer%3B putative	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0591
trd_0592	trd_0592		trd_0592	587156	587275	+	hypothetical protein	identified by glimmer%3B putative	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0592
trd_0594	trd_0594		trd_0594	587337	587756	+	cytochrome oxidase subunit II	identified by match to protein family HMM PF00034	gene	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0594
trd_0595	trd_0595	nadC	nadC	588180	589196	+	nicotinate-nucleotide pyrophosphorylase	identified by match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078	gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0595
trd_0596	trd_0596	nadA	nadA	589216	590139	+	quinolinate synthetase complex%2C A subunit	identified by match to protein family HMM PF02445%3B match to protein family HMM TIGR00550	gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0596
trd_0597	trd_0597		trd_0597	590386	591450	-	putative pyrimidine precursor biosynthesis enzyme	identified by match to protein family HMM PF09084	gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0597
trd_0598	trd_0598		trd_0598	591464	592222	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0598
trd_0599	trd_0599		trd_0599	592212	593018	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0599
trd_0600	trd_0600		trd_0600	593468	593680	+	hypothetical protein	identified by glimmer%3B putative	gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0600
trd_0601	trd_0601		trd_0601	594189	594566	+	hypothetical protein	identified by glimmer%3B putative	gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0601
trd_0602	trd_0602		trd_0602	594628	595017	-	conserved hypothetical protein		gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0602
trd_0603	trd_0603		trd_0603	595403	596314	-	ribonuclease Z	identified by match to protein family HMM PF00753	gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0603
trd_0604	trd_0604	ggt	ggt	596427	598025	+	gamma-glutamyltransferase	identified by match to protein family HMM PF01019%3B match to protein family HMM TIGR00066	gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0604
trd_0605	trd_0605		trd_0605	598029	598514	-	conserved hypothetical protein		gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0605
trd_0606	trd_0606		trd_0606	600118	601149	-	hydrogenase expression/formation	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769	gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0606
trd_0607	trd_0607		trd_0607	598919	600121	+	hypothetical protein	identified by glimmer%3B putative	gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0607
trd_0608	trd_0608		trd_0608	601154	602281	-	6-phosphofructokinase 1	identified by match to protein family HMM PF00365	gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0608
trd_0609	trd_0609	proS	proS	602437	603891	+	prolyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF09180%3B match to protein family HMM TIGR00408	gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0609
trd_0610	trd_0610		trd_0610	603959	604048	-	tRNA-Ser		tRNA	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0610
trd_0611	trd_0611		trd_0611	604291	604381	-	tRNA-Ser		tRNA	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0611
trd_0612	trd_0612		trd_0612	604419	604494	-	tRNA-Arg		tRNA	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0612
trd_0613	trd_0613	rpe	rpe	604730	605437	-	ribulose-phosphate 3-epimerase	identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0613
trd_0614	trd_0614		trd_0614	605537	606571	+	putative molybdopterin biosynthesis protein		gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0614
trd_0615	trd_0615		trd_0615	606609	607355	+	FHA domain protein	identified by match to protein family HMM PF00498	gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0615
trd_0616	trd_0616		trd_0616	607365	607817	+	ABC transporter ATP-binding protein	identified by match to protein family HMM PF00498	gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0616
trd_0617	trd_0617		trd_0617	608032	609783	+	hypothetical protein	identified by glimmer%3B putative	gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0617
trd_0618	trd_0618		trd_0618	610649	610957	-	DUF167	identified by match to protein family HMM PF02594	gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0618
trd_0619	trd_0619		trd_0619	609780	610661	+	probable dolichol-phosphate mannosyltransferase-putative membrane bound sugar transferase involved in LPS biosynthesis	identified by match to protein family HMM PF00535	gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0619
trd_0620	trd_0620		trd_0620	610954	611793	-	conserved hypothetical protein TIGR00268	identified by match to protein family HMM PF01171%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00268	gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0620
trd_0622	trd_0622		trd_0622	611886	612878	+	putative membrane protein	identified by match to protein family HMM PF03706%3B match to protein family HMM TIGR00374	gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0622
trd_0623	trd_0623		trd_0623	612948	615320	-	polyribonucleotide nucleotidyltransferase	identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726%3B match to protein family HMM PF07650	gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0623
trd_0624	trd_0624	rpsO	rpsO	615512	615781	-	ribosomal protein S15	identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952	gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0624
trd_0625	trd_0625	ilvC	ilvC	615925	616932	-	ketol-acid reductoisomerase	identified by match to protein family HMM PF01450%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00465	gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0625
trd_0626	trd_0626	ilvN	ilvN	616978	617505	-	acetolactate synthase%2C small subunit	identified by match to protein family HMM PF01842%3B match to protein family HMM TIGR00119	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0626
trd_0627	trd_0627	ilvB	ilvB	617499	619271	-	acetolactate synthase%2C large subunit%2C biosynthetic type	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118	gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0627
trd_0628	trd_0628		trd_0628	619401	619514	+	hypothetical protein	identified by glimmer%3B putative	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0628
trd_0629	trd_0629		trd_0629	619803	620384	-	hypothetical protein	identified by glimmer%3B putative	gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0629
trd_0630	trd_0630		trd_0630	620629	620760	+	hypothetical protein	identified by glimmer%3B putative	gene	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0630
trd_0631	trd_0631		trd_0631	621556	621678	-	hypothetical protein	identified by glimmer%3B putative	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0631
trd_0632	trd_0632		trd_0632	620862	621566	+	KDP operon transcriptional regulatory protein kdpE	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0632
trd_0633	trd_0633		trd_0633	622342	622602	-	hypothetical protein	identified by glimmer%3B putative	gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0633
trd_0634	trd_0634		trd_0634	622794	623711	+	serinethreonine phosphatase	identified by match to protein family HMM PF00481	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0634
trd_0635	trd_0635		trd_0635	623708	624580	+	Amidohydrolase family	identified by match to protein family HMM PF04909	gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0635
trd_0636	trd_0636	ruvA	ruvA	624577	625152	+	Holliday junction DNA helicase RuvA	identified by match to protein family HMM PF01330%3B match to protein family HMM PF07499%3B match to protein family HMM TIGR00084	gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0636
trd_0637	trd_0637	hisD	hisD	625154	626500	-	histidinol dehydrogenase	identified by match to protein family HMM PF00815%3B match to protein family HMM TIGR00069	gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0637
trd_0638	trd_0638	hisG	hisG	626497	627516	-	ATP phosphoribosyltransferase	identified by match to protein family HMM PF01634%3B match to protein family HMM TIGR00070%3B match to protein family HMM TIGR03455	gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0638
trd_0639	trd_0639		trd_0639	627521	628963	-	histidyl-tRNA synthetase	identified by match to protein family HMM PF00587	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0639
trd_0640	trd_0640	pheT	pheT	628960	631413	-	phenylalanyl-tRNA synthetase%2C beta subunit	identified by match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0640
trd_0641	trd_0641	pheS	pheS	631446	632525	-	phenylalanyl-tRNA synthetase%2C alpha subunit	identified by match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0641
trd_0642	trd_0642	eno	eno	632661	633962	+	phosphopyruvate hydratase	identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060	gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0642
trd_0643	trd_0643	gpmI	gpmI	634138	635712	-	2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase	identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307	gene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0643
trd_0644	trd_0644	ilvD	ilvD	635860	637530	+	dihydroxy-acid dehydratase	identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR00110	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0644
trd_0645	trd_0645	purK	purK	637583	638692	-	phosphoribosylaminoimidazole carboxylase%2C ATPase subunit	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01161	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0645
trd_0646	trd_0646	purE	purE	638704	639219	-	phosphoribosylaminoimidazole carboxylase%2C catalytic subunit	identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162	gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0646
trd_0647	trd_0647		trd_0647	639235	640725	-	isocitrate dehydrogenase (NADP)	identified by match to protein family HMM PF00180	gene	gene641	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0647
trd_0648	trd_0648		trd_0648	640831	642195	-	amine oxidase%2C flavin-containing protein	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01593	gene	gene642	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0648
trd_0649	trd_0649	secF	secF	642206	643129	-	protein-export membrane protein SecF	identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966	gene	gene643	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0649
trd_0650	trd_0650	secD	secD	643142	644611	-	protein-export membrane protein SecD	identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129	gene	gene644	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0650
trd_0651	trd_0651	nadD	nadD	644655	645299	-	nicotinate (nicotinamide) nucleotide adenylyltransferase	identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482	gene	gene645	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0651
trd_0652	trd_0652	gyrA	gyrA	646175	648685	-	DNA gyrase%2C A subunit	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063	gene	gene646	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0652
trd_0653	trd_0653		trd_0653	648819	649766	-	putative lipid A biosynthesis lauroyl acyltransferase		gene	gene647	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0653
trd_0654	trd_0654		trd_0654	649763	650410	-	hypothetical protein	identified by glimmer%3B putative	gene	gene648	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0654
trd_0655	trd_0655		trd_0655	650466	651581	-	ino1-like myo-inositol-1-phosphate synthase related	identified by match to protein family HMM PF01658%3B match to protein family HMM PF07994	gene	gene649	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0655
trd_0656	trd_0656		trd_0656	651679	651813	-	hypothetical protein	identified by glimmer%3B putative	gene	gene650	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0656
trd_0657	trd_0657		trd_0657	652019	653131	-	putative heptosyltransferase III WaaQ	identified by match to protein family HMM PF01075	gene	gene651	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0657
trd_0658	trd_0658		trd_0658	653128	654234	-	AprM	identified by match to protein family HMM PF00534	gene	gene652	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0658
trd_0659	trd_0659		trd_0659	654231	655388	-	lipopolysaccharide core biosynthesis heptosyltransferase	identified by match to protein family HMM PF01075	gene	gene653	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0659
trd_0660	trd_0660		trd_0660	655385	656419	-	putative glycosyltransferase	identified by match to protein family HMM PF01075	gene	gene654	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0660
trd_0661	trd_0661	fabZ	fabZ	656423	656872	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	identified by match to protein family HMM PF03061%3B match to protein family HMM PF07977%3B match to protein family HMM TIGR01750	gene	gene655	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0661
trd_0662	trd_0662	purA	purA	656893	658188	-	adenylosuccinate synthetase	identified by match to protein family HMM PF00709%3B match to protein family HMM TIGR00184	gene	gene656	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0662
trd_0663	trd_0663		trd_0663	658260	659285	-	chaperone protein dnaJ	identified by match to protein family HMM PF00226%3B match to protein family HMM PF01556	gene	gene657	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0663
trd_0664	trd_0664		trd_0664	659396	660109	-	hypothetical protein	identified by glimmer%3B putative	gene	gene658	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0664
trd_0665	trd_0665		trd_0665	660250	660918	-	conserved hypothetical archeal protein		gene	gene659	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0665
trd_0666	trd_0666	lexA	lexA	661242	661886	-	LexA repressor	identified by match to protein family HMM PF00717%3B match to protein family HMM PF01726%3B match to protein family HMM TIGR00498	gene	gene660	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0666
trd_0667	trd_0667		trd_0667	661988	662563	+	hypothetical protein	identified by glimmer%3B putative	gene	gene661	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0667
trd_0668	trd_0668		trd_0668	662553	664931	+	MutS2 family protein	identified by match to protein family HMM PF00488%3B match to protein family HMM PF01713%3B match to protein family HMM TIGR01069	gene	gene662	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0668
trd_0669	trd_0669		trd_0669	664941	665165	+	conserved hypothetical protein		gene	gene663	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0669
trd_0670	trd_0670	mfd	mfd	665171	668668	-	transcription-repair coupling factor	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580	gene	gene664	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0670
trd_0671	trd_0671		trd_0671	668755	669354	+	competence protein ComEA helix-hairpin-helix repeat region	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00633%3B match to protein family HMM TIGR00426	gene	gene665	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0671
trd_0672	trd_0672		trd_0672	669351	670688	+	ComE-like competence protein	identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360	gene	gene666	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0672
trd_0674	trd_0674		trd_0674	670719	670794	+	tRNA-Thr		tRNA	gene667	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0674
trd_0675	trd_0675		trd_0675	670809	670892	+	tRNA-Tyr		tRNA	gene668	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0675
trd_0676	trd_0676	tuf	tuf	670981	672183	+	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene669	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0676
trd_0677	trd_0677	rpmG	rpmG	672223	672393	+	ribosomal protein L33	identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023	gene	gene670	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0677
trd_0678	trd_0678		trd_0678	672417	672492	+	tRNA-Trp		tRNA	gene671	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0678
trd_0679	trd_0679		trd_0679	672611	672880	+	preprotein translocase	identified by match to protein family HMM PF00584%3B match to protein family HMM TIGR00964	gene	gene672	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0679
trd_0680	trd_0680	nusG	nusG	672877	673473	+	transcription termination/antitermination factor NusG	identified by match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922	gene	gene673	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0680
trd_0681	trd_0681	rplK	rplK	673540	673965	+	ribosomal protein L11	identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632	gene	gene674	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0681
trd_0682	trd_0682	rplA	rplA	674018	674743	+	ribosomal protein L1	identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169	gene	gene675	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0682
trd_0683	trd_0683		trd_0683	674902	675441	+	50S ribosomal protein L10	identified by match to protein family HMM PF00466	gene	gene676	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0683
trd_0684	trd_0684	rplL	rplL	675481	675879	+	ribosomal protein L7/L12	identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855	gene	gene677	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0684
trd_0685	trd_0685		trd_0685	675945	676018	+	tRNA-Pro		tRNA	gene678	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0685
trd_0686	trd_0686		trd_0686	676067	676690	+	transcriptional regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF03861	gene	gene679	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0686
trd_0687	trd_0687		trd_0687	676760	678004	-	YbbR-like protein	identified by match to protein family HMM PF07949	gene	gene680	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0687
trd_0688	trd_0688		trd_0688	678006	678920	-	conserved hypothetical protein TIGR00159	identified by match to protein family HMM PF02457%3B match to protein family HMM TIGR00159	gene	gene681	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0688
trd_0689	trd_0689		trd_0689	679036	680781	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene682	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0689
trd_0690	trd_0690		trd_0690	680851	681498	-	putative chromosome replication initiation protein	identified by match to protein family HMM PF00308%3B match to protein family HMM PF01695	gene	gene683	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0690
trd_0691	trd_0691		trd_0691	681575	682279	-	putative dnaD/phage-associated domain protein	identified by match to protein family HMM PF04271%3B match to protein family HMM TIGR01446	gene	gene684	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0691
trd_0692	trd_0692	dnaB	dnaB	682293	683645	-	replicative DNA helicase	identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665	gene	gene685	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0692
trd_0693	trd_0693	rplI	rplI	683659	684135	-	ribosomal protein L9	identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158	gene	gene686	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0693
trd_0694	trd_0694		trd_0694	684202	684372	-	hypothetical protein	identified by glimmer%3B putative	gene	gene687	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0694
trd_0695	trd_0695		trd_0695	684656	684883	+	hypothetical protein	identified by glimmer%3B putative	gene	gene688	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0695
trd_0696	trd_0696		trd_0696	684914	685699	-	RNA methyltransferase%2C TrmH family%2C group 3	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186	gene	gene689	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0696
trd_0697	trd_0697	cysS	cysS	685696	687093	-	cysteinyl-tRNA synthetase	identified by match to protein family HMM PF01406%3B match to protein family HMM PF09190%3B match to protein family HMM TIGR00435	gene	gene690	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0697
trd_0698	trd_0698		trd_0698	687090	687224	-	hypothetical protein	identified by glimmer%3B putative	gene	gene691	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0698
trd_0699	trd_0699		trd_0699	687217	687462	-	putative regulatory protein%2C FmdB family	identified by match to protein family HMM TIGR02605	gene	gene692	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0699
trd_0700	trd_0700		trd_0700	687543	690296	-	DNA polymerase I	identified by match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593	gene	gene693	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0700
trd_0701	trd_0701		trd_0701	690502	691524	+	ATPase domain protein	identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728	gene	gene694	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0701
trd_0702	trd_0702		trd_0702	691524	692780	+	Protein of unknown function family	identified by match to protein family HMM PF01882	gene	gene695	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0702
trd_0703	trd_0703		trd_0703	692793	695546	+	Transglutaminase-like superfamily protein	identified by match to protein family HMM PF01841	gene	gene696	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0703
trd_0704	trd_0704		trd_0704	695461	696441	+	probable ribokinase	identified by match to protein family HMM PF00294	gene	gene697	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0704
trd_0705	trd_0705		trd_0705	696509	698569	-	V-type H(+)-translocating pyrophosphatase	identified by match to protein family HMM PF03030%3B match to protein family HMM TIGR01104	gene	gene698	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0705
trd_0706	trd_0706		trd_0706	698718	699035	-	conserved hypothetical protein		gene	gene699	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0706
trd_0707	trd_0707		trd_0707	699090	699695	-	CoxC		gene	gene700	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0707
trd_0708	trd_0708		trd_0708	699774	701693	-	quinol oxidase polypeptide I	identified by match to protein family HMM PF00115%3B match to protein family HMM TIGR02891	gene	gene701	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0708
trd_0709	trd_0709		trd_0709	701829	702995	-	cytochrome c oxidase subunit II	identified by match to protein family HMM PF00116%3B match to protein family HMM PF02790%3B match to protein family HMM TIGR02866	gene	gene702	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0709
trd_0710	trd_0710		trd_0710	702997	703188	-	hypothetical protein	identified by glimmer%3B putative	gene	gene703	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0710
trd_0711	trd_0711	acsA	acsA	703484	705472	+	acetate--CoA ligase	identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR02188	gene	gene704	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0711
trd_0712	trd_0712		trd_0712	705550	706728	+	acetyl-CoA acetyltransferase	identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930	gene	gene705	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0712
trd_0713	trd_0713		trd_0713	706745	707935	-	DNA replication and repair protein recF	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611	gene	gene706	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0713
trd_0714	trd_0714	dnaN	dnaN	708009	709151	-	DNA polymerase III%2C beta subunit	identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663	gene	gene707	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0714
trd_0715	trd_0715		trd_0715	709796	710392	+	hypothetical protein	identified by glimmer%3B putative	gene	gene708	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0715
trd_0716	trd_0716	queA	queA	711657	712718	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	identified by match to protein family HMM PF02547%3B match to protein family HMM TIGR00113	gene	gene710	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0716
trd_0717	trd_0717		trd_0717	710480	711667	+	probable cysteine desulfurase	identified by match to protein family HMM PF00266	gene	gene709	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0717
trd_0718	trd_0718	ruvB	ruvB	712711	713772	-	Holliday junction DNA helicase RuvB	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01078%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00635	gene	gene711	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0718
trd_0719	trd_0719		trd_0719	713824	714015	-	conserved domain protein	identified by match to protein family HMM PF03966	gene	gene712	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0719
trd_0720	trd_0720		trd_0720	714311	714430	-	hypothetical protein	identified by glimmer%3B putative	gene	gene713	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0720
trd_0721	trd_0721		trd_0721	714494	714569	-	tRNA-His		tRNA	gene714	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0721
trd_0722	trd_0722		trd_0722	714969	715055	-	tRNA-Leu		tRNA	gene715	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0722
trd_0723	trd_0723		trd_0723	715431	717155	-	putative glutathione-regulated potassium-efflux system protein KefB	identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254	gene	gene716	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0723
trd_0724	trd_0724		trd_0724	717278	717469	-	hypothetical protein	identified by glimmer%3B putative	gene	gene717	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0724
trd_0725	trd_0725		trd_0725	717547	717708	-	hypothetical protein	identified by glimmer%3B putative	gene	gene718	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0725
trd_0726	trd_0726	alaS	alaS	717681	720317	+	alanyl-tRNA synthetase	identified by match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344	gene	gene719	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0726
trd_0727	trd_0727		trd_0727	720280	720423	+	hypothetical protein	identified by glimmer%3B putative	gene	gene720	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0727
trd_0728	trd_0728		trd_0728	720569	721792	+	hypothetical protein	identified by glimmer%3B putative	gene	gene721	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0728
trd_0729	trd_0729		trd_0729	721785	722270	+	conserved hypothetical protein TIGR00250	identified by match to protein family HMM PF03652%3B match to protein family HMM TIGR00250	gene	gene722	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0729
trd_0730	trd_0730		trd_0730	722319	722435	-	hypothetical protein	identified by glimmer%3B putative	gene	gene724	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0730
trd_0731	trd_0731		trd_0731	722248	722676	+	Protein of unknown function (DUF970) superfamily	identified by match to protein family HMM PF06153	gene	gene723	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0731
trd_0732	trd_0732		trd_0732	722717	723121	-	hypothetical protein	identified by glimmer%3B putative	gene	gene725	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0732
trd_0733	trd_0733		trd_0733	723357	724223	-	5%2C10-methylene-tetrahydrofolate dehydrogenase	identified by match to protein family HMM PF00763%3B match to protein family HMM PF02882	gene	gene727	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0733
trd_0734	trd_0734		trd_0734	723258	723404	+	hypothetical protein	identified by glimmer%3B putative	gene	gene726	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0734
trd_0735	trd_0735		trd_0735	724304	724882	-	hypothetical protein	identified by glimmer%3B putative	gene	gene728	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0735
trd_0736	trd_0736		trd_0736	725186	725650	+	Helix-turn-helix domain protein	identified by match to protein family HMM PF01381	gene	gene729	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0736
trd_0737	trd_0737		trd_0737	725647	725778	+	hypothetical protein	identified by glimmer%3B putative	gene	gene730	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0737
trd_0738	trd_0738		trd_0738	725780	729280	+	DNA polymerase III alpha subunit	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594	gene	gene731	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0738
trd_0739	trd_0739		trd_0739	729290	730321	-	putative cyanophycin synthetase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene732	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0739
trd_0740	trd_0740		trd_0740	730388	730591	-	cyanophycin synthetase		gene	gene733	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0740
trd_0741	trd_0741	rdgB	rdgB	730613	731245	-	non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family	identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042	gene	gene734	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0741
trd_0742	trd_0742		trd_0742	731261	732040	-	TatD-related deoxyribonuclease	identified by match to protein family HMM PF01026%3B match to protein family HMM PF04909%3B match to protein family HMM TIGR00010	gene	gene735	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0742
trd_0743	trd_0743	glmS	glmS	732048	733859	-	glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing	identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135	gene	gene736	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0743
trd_0744	trd_0744		trd_0744	734009	734248	+	hypothetical protein	identified by glimmer%3B putative	gene	gene737	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0744
trd_0745	trd_0745	purB	purB	734432	735757	+	adenylosuccinate lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00928	gene	gene738	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0745
trd_0746	trd_0746	purC	purC	735754	736662	+	phosphoribosylaminoimidazole-succinocarboxamide synthase	identified by match to protein family HMM PF01259%3B match to protein family HMM TIGR00081	gene	gene739	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0746
trd_0747	trd_0747	purS	purS	736663	736932	+	phosphoribosylformylglycinamidine synthase%2C purS protein	identified by match to protein family HMM PF02700%3B match to protein family HMM TIGR00302	gene	gene740	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0747
trd_0748	trd_0748	purQ	purQ	736951	737661	+	phosphoribosylformylglycinamidine synthase I	identified by match to protein family HMM PF07685%3B match to protein family HMM TIGR01737	gene	gene741	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0748
trd_0749	trd_0749	purL	purL	737695	739896	+	phosphoribosylformylglycinamidine synthase II	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01736	gene	gene742	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0749
trd_0750	trd_0750	purF	purF	739958	741430	+	amidophosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134	gene	gene743	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0750
trd_0751	trd_0751	gcvT	gcvT	741595	742722	+	glycine cleavage system T protein	identified by match to protein family HMM PF01571%3B match to protein family HMM PF08669%3B match to protein family HMM TIGR00528	gene	gene744	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0751
trd_0752	trd_0752	gcvH	gcvH	742744	743145	+	glycine cleavage system H protein	identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527	gene	gene745	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0752
trd_0753	trd_0753		trd_0753	743177	744523	+	Glycine cleavage system P-protein	identified by match to protein family HMM PF02347	gene	gene746	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0753
trd_0754	trd_0754	engA	engA	744609	745991	+	ribosome-associated GTPase EngA	identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650%3B match to protein family HMM TIGR03594	gene	gene747	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0754
trd_0755	trd_0755	glyA	glyA	746017	747297	+	serine hydroxymethyltransferase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202%3B match to protein family HMM PF00464	gene	gene748	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0755
trd_0756	trd_0756		trd_0756	747294	748430	+	undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase	identified by match to protein family HMM PF00953	gene	gene749	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0756
trd_0757	trd_0757	ubiB	ubiB	748943	750613	-	2-polyprenylphenol 6-hydroxylase	identified by match to protein family HMM PF03109	gene	gene751	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0757
trd_0758	trd_0758		trd_0758	748467	748946	+	putative cytochrome c family protein	identified by match to protein family HMM TIGR02605	gene	gene750	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0758
trd_0759	trd_0759		trd_0759	750630	750764	-	hypothetical protein	identified by glimmer%3B putative	gene	gene752	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0759
trd_0760	trd_0760		trd_0760	750715	751611	+	protease htpx	identified by match to protein family HMM PF01435	gene	gene753	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0760
trd_0761	trd_0761		trd_0761	752185	752463	-	conserved hypothetical protein		gene	gene755	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0761
trd_0762	trd_0762		trd_0762	751608	752198	+	conserved hypothetical protein		gene	gene754	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0762
trd_0763	trd_0763		trd_0763	752460	753200	-	transcription regulator	identified by match to protein family HMM PF04012	gene	gene756	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0763
trd_0764	trd_0764		trd_0764	753298	754146	+	Protein of unknown function superfamily	identified by match to protein family HMM PF01972	gene	gene757	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0764
trd_0765	trd_0765		trd_0765	754292	754367	+	tRNA-Pro		tRNA	gene758	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0765
trd_0766	trd_0766		trd_0766	754369	754444	+	tRNA-Gly		tRNA	gene759	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0766
trd_0767	trd_0767		trd_0767	754928	756037	+	alcohol dehydrogenase class III	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene760	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0767
trd_0768	trd_0768	tyrS	tyrS	756039	757256	-	tyrosyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234	gene	gene761	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0768
trd_0769	trd_0769	ribF	ribF	757240	758244	-	riboflavin biosynthesis protein RibF	identified by match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083	gene	gene762	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0769
trd_0770	trd_0770		trd_0770	758252	759160	-	tRNA pseudouridine synthase B	identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431	gene	gene763	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0770
trd_0771	trd_0771		trd_0771	759167	760153	-	exopolyphosphatase-related protein	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272	gene	gene764	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0771
trd_0772	trd_0772	rbfA	rbfA	760185	760574	-	ribosome-binding factor A	identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082	gene	gene765	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0772
trd_0773	trd_0773	infB	infB	760615	762474	-	translation initiation factor IF-2	identified by match to protein family HMM PF00009%3B match to protein family HMM PF01926%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487	gene	gene766	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0773
trd_0774	trd_0774		trd_0774	762471	762863	-	Protein of unknown function (DUF448) family	identified by match to protein family HMM PF04296	gene	gene767	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0774
trd_0775	trd_0775	nusA	nusA	762860	764179	-	transcription termination factor NusA	identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF08529%3B match to protein family HMM TIGR01953	gene	gene768	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0775
trd_0776	trd_0776		trd_0776	764314	764427	+	hypothetical protein	identified by glimmer%3B putative	gene	gene769	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0776
trd_0777	trd_0777		trd_0777	764501	765889	+	putative conserved hypothetical protein	identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01826	gene	gene770	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0777
trd_0778	trd_0778	gap	gap	765924	766946	+	glyceraldehyde-3-phosphate dehydrogenase%2C type I	identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534	gene	gene771	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0778
trd_0779	trd_0779	pgk	pgk	766982	768160	+	phosphoglycerate kinase	identified by match to protein family HMM PF00162	gene	gene772	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0779
trd_0780	trd_0780	tpiA	tpiA	768170	768952	+	triosephosphate isomerase	identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419	gene	gene773	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0780
trd_0781	trd_0781	secG	secG	768958	769179	+	preprotein translocase%2C SecG subunit	identified by match to protein family HMM TIGR00810	gene	gene774	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0781
trd_0782	trd_0782		trd_0782	769206	770924	+	putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	identified by match to protein family HMM PF00496	gene	gene775	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0782
trd_0783	trd_0783		trd_0783	770990	771178	+	mttA/Hcf106 family	identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411	gene	gene776	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0783
trd_0784	trd_0784		trd_0784	771186	771440	-	hypothetical protein	identified by glimmer%3B putative	gene	gene777	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0784
trd_0785	trd_0785		trd_0785	771716	771892	+	hypothetical protein	identified by glimmer%3B putative	gene	gene778	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0785
trd_0786	trd_0786		trd_0786	772365	772667	-	Map3k10 protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene779	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0786
trd_0787	trd_0787		trd_0787	772642	772893	+	hypothetical protein	identified by glimmer%3B putative	gene	gene780	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0787
trd_0788	trd_0788	lepB	lepB	772912	773577	+	signal peptidase I	identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR02227	gene	gene781	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0788
trd_0789	trd_0789		trd_0789	773684	774229	+	Uncharacterized ACR	identified by match to protein family HMM PF02577	gene	gene782	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0789
trd_0790	trd_0790		trd_0790	774237	774566	+	hypothetical protein	identified by glimmer%3B putative	gene	gene783	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0790
trd_0791	trd_0791		trd_0791	774574	775020	-	hypothetical protein	identified by glimmer%3B putative	gene	gene784	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0791
trd_0792	trd_0792		trd_0792	775114	775662	+	putative NAD-reducing hydrogenase	identified by match to protein family HMM PF01257	gene	gene785	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0792
trd_0793	trd_0793		trd_0793	775646	777370	+	NAD-dependent formate dehydrogenase beta subunit	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01512	gene	gene786	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0793
trd_0794	trd_0794		trd_0794	777431	778420	-	putative ornithine cyclodeaminase	identified by match to protein family HMM PF01488%3B match to protein family HMM PF02423	gene	gene787	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0794
trd_0795	trd_0795		trd_0795	778595	778669	+	tRNA-Asn		tRNA	gene788	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0795
trd_0796	trd_0796		trd_0796	778861	779847	+	glyoxylate reductase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene789	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0796
trd_0797	trd_0797		trd_0797	779849	781150	+	3-oxoacyl-[acyl-carrier-protein] synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150	gene	gene790	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0797
trd_0798	trd_0798		trd_0798	781201	781377	+	hypothetical protein	identified by glimmer%3B putative	gene	gene791	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0798
trd_0799	trd_0799		trd_0799	781796	782905	-	sigma factor MysA	identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937	gene	gene792	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0799
trd_0800	trd_0800		trd_0800	782971	783204	+	hypothetical protein	identified by glimmer%3B putative	gene	gene793	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0800
trd_0801	trd_0801	ruvC	ruvC	783192	783683	+	crossover junction endodeoxyribonuclease RuvC	identified by match to protein family HMM PF02075%3B match to protein family HMM TIGR00228	gene	gene794	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0801
trd_0802	trd_0802		trd_0802	783692	784489	+	hemolysin A	identified by match to protein family HMM PF01728%3B match to protein family HMM TIGR00478	gene	gene795	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0802
trd_0803	trd_0803		trd_0803	785244	786200	-	ArgK protein	identified by match to protein family HMM PF03308	gene	gene796	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0803
trd_0804	trd_0804		trd_0804	786207	786617	-	Sbm protein	identified by match to protein family HMM PF02310%3B match to protein family HMM TIGR00640	gene	gene797	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0804
trd_0805	trd_0805		trd_0805	786631	787176	-	putative ATP:corrinoid adenosyltransferase BtuR/CobO/CobP		gene	gene798	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0805
trd_0806	trd_0806		trd_0806	787201	787329	-	hypothetical protein	identified by glimmer%3B putative	gene	gene799	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0806
trd_0807	trd_0807	pth	pth	787369	788088	-	peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447	gene	gene800	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0807
trd_0808	trd_0808		trd_0808	787967	789193	-	putative glycosyltransferase	identified by match to protein family HMM PF00534	gene	gene801	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0808
trd_0809	trd_0809		trd_0809	789236	789751	+	putative twin-arginine translocation protein%2C TatA/E family	identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411	gene	gene802	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0809
trd_0810	trd_0810		trd_0810	789765	790439	-	putative ubiE/COQ5 methyltransferase family protein	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene803	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0810
trd_0811	trd_0811	tgt	tgt	790438	791730	+	queuine tRNA-ribosyltransferase	identified by match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449	gene	gene804	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0811
trd_0812	trd_0812		trd_0812	791738	792025	+	Acylphosphatase	identified by match to protein family HMM PF00708	gene	gene805	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0812
trd_0813	trd_0813		trd_0813	792043	793359	+	UDP-glucose 6-dehydrogenase	identified by match to protein family HMM PF00984%3B match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026	gene	gene806	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0813
trd_0814	trd_0814	acpS	acpS	793331	793774	+	holo-(acyl-carrier-protein) synthase	identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00516%3B match to protein family HMM TIGR00556	gene	gene807	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0814
trd_0815	trd_0815		trd_0815	793789	795423	+	protein of unknown function:YjeF-related protein%2C N-terminal	identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197	gene	gene808	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0815
trd_0816	trd_0816		trd_0816	795495	795995	+	IMP dehydrogenase	identified by match to protein family HMM PF00571	gene	gene809	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0816
trd_0817	trd_0817		trd_0817	796047	796586	-	DNA binding domain%2C excisionase family protein	identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR01764	gene	gene810	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0817
trd_0818	trd_0818		trd_0818	796747	797544	-	metallo-beta-lactamase superfamily protein	identified by match to protein family HMM PF00753	gene	gene811	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0818
trd_0819	trd_0819		trd_0819	797548	798240	-	conserved hypothetical protein TIGR00044	identified by match to protein family HMM PF01168%3B match to protein family HMM TIGR00044	gene	gene812	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0819
trd_0820	trd_0820		trd_0820	798265	799035	-	conserved hypothetical protein TIGR00726	identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726	gene	gene813	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0820
trd_0821	trd_0821		trd_0821	799032	800687	-	putative acetolactate synthase large subunit	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene814	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0821
trd_0822	trd_0822		trd_0822	800897	801109	-	hypothetical protein	identified by glimmer%3B putative	gene	gene815	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0822
trd_0823	trd_0823		trd_0823	801106	801834	-	endonuclease V	identified by match to protein family HMM PF04493	gene	gene816	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0823
trd_0824	trd_0824	fmt	fmt	801855	802796	-	methionyl-tRNA formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460	gene	gene817	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0824
trd_0825	trd_0825		trd_0825	802972	807429	+	putative membrane protein		gene	gene818	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0825
trd_0826	trd_0826		trd_0826	807439	809778	+	putative membrane protein		gene	gene819	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0826
trd_0827	trd_0827	infC	infC	810054	810437	+	translation initiation factor IF-3	identified by match to protein family HMM PF00707	gene	gene820	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0827
trd_0828	trd_0828	rpmI	rpmI	810442	810642	+	ribosomal protein L35	identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001	gene	gene821	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0828
trd_0829	trd_0829	rplT	rplT	810659	811012	+	ribosomal protein L20	identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032	gene	gene822	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0829
trd_0830	trd_0830		trd_0830	811009	811824	+	possible 23S rRNA methyltransferase tsnR	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032	gene	gene823	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0830
trd_0831	trd_0831		trd_0831	811919	812197	+	DNA-binding protein HU 1	identified by match to protein family HMM PF00216	gene	gene824	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0831
trd_0832	trd_0832	gyrB	gyrB	812265	814175	-	DNA gyrase%2C B subunit	identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059	gene	gene825	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0832
trd_0833	trd_0833		trd_0833	814172	815161	-	putative membrane protein		gene	gene826	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0833
trd_0834	trd_0834		trd_0834	815165	815542	-	Domain of unknown function (DUF1025) superfamily	identified by match to protein family HMM PF06262	gene	gene827	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0834
trd_0835	trd_0835		trd_0835	815601	817241	-	PbpA	identified by match to protein family HMM PF00905	gene	gene828	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0835
trd_0836	trd_0836		trd_0836	817245	818549	-	cell division membrane protein	identified by match to protein family HMM PF01098	gene	gene829	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0836
trd_0837	trd_0837	mtaP	mtaP	818553	819422	-	methylthioadenosine phosphorylase	identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01694	gene	gene830	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0837
trd_0838	trd_0838		trd_0838	819483	820184	+	hypothetical protein	identified by glimmer%3B putative	gene	gene831	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0838
trd_0839	trd_0839		trd_0839	820171	821541	+	O-Antigen Polymerase family	identified by match to protein family HMM PF04932	gene	gene832	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0839
trd_0840	trd_0840		trd_0840	821557	822510	+	UDP-glucuronate decarboxylase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene833	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0840
trd_0841	trd_0841		trd_0841	822512	824011	+	O-Antigen Polymerase family	identified by match to protein family HMM PF04932	gene	gene834	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0841
trd_0842	trd_0842		trd_0842	824026	825027	+	putative membrane protein	identified by match to protein family HMM PF03706%3B match to protein family HMM TIGR00374	gene	gene835	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0842
trd_0843	trd_0843		trd_0843	825024	826160	+	AprM	identified by match to protein family HMM PF00534	gene	gene836	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0843
trd_0844	trd_0844		trd_0844	827793	828938	-	hypothetical protein	identified by glimmer%3B putative	gene	gene838	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0844
trd_0845	trd_0845		trd_0845	826216	827802	+	Polysaccharide biosynthesis protein	identified by match to protein family HMM PF01943	gene	gene837	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0845
trd_0846	trd_0846		trd_0846	828946	829473	-	putative lipoprotein	identified by match to protein family HMM PF01551	gene	gene839	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0846
trd_0847	trd_0847		trd_0847	829707	830741	+	DNA polymerase III%2C delta subunit superfamily	identified by match to protein family HMM PF06144	gene	gene840	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0847
trd_0848	trd_0848		trd_0848	830747	831046	-	30S ribosomal protein-like protein		gene	gene841	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0848
trd_0849	trd_0849		trd_0849	830937	831071	-	hypothetical protein	identified by glimmer%3B putative	gene	gene842	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0849
trd_0850	trd_0850	mviN	mviN	831268	832887	+	integral membrane protein MviN	identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695	gene	gene843	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0850
trd_0851	trd_0851	lepA	lepA	832918	834744	+	GTP-binding protein LepA	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393	gene	gene844	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0851
trd_0852	trd_0852		trd_0852	834752	836122	+	putative tetrapyrrole (corrin/porphyrin) methylases	identified by match to protein family HMM PF00590%3B match to protein family HMM PF03819%3B match to protein family HMM TIGR00444	gene	gene845	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0852
trd_0853	trd_0853	aspS	aspS	836158	837996	+	aspartyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459	gene	gene846	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0853
trd_0854	trd_0854		trd_0854	838078	838965	-	probable manganese catalase	identified by match to protein family HMM PF05067	gene	gene847	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0854
trd_0855	trd_0855		trd_0855	839590	839718	-	hypothetical protein	identified by glimmer%3B putative	gene	gene848	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0855
trd_0856	trd_0856		trd_0856	839864	839950	+	tRNA-Leu		tRNA	gene849	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0856
trd_0857	trd_0857		trd_0857	839957	840032	+	tRNA-Val		tRNA	gene850	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0857
trd_0858	trd_0858		trd_0858	840052	840127	+	tRNA-Phe		tRNA	gene851	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0858
trd_0859	trd_0859		trd_0859	840247	841182	-	putative IolC myo-catabolism protein		gene	gene852	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0859
trd_0860	trd_0860		trd_0860	841277	841350	+	tRNA-Gln		tRNA	gene853	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0860
trd_0861	trd_0861		trd_0861	841488	842762	+	putative GTPase of unknown function subfamily	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR03156	gene	gene854	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0861
trd_0862	trd_0862		trd_0862	842856	843221	+	Roadblock/LC7 domain superfamily	identified by match to protein family HMM PF03259	gene	gene855	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0862
trd_0863	trd_0863	purM	purM	843235	844314	+	phosphoribosylformylglycinamidine cyclo-ligase	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878	gene	gene856	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0863
trd_0864	trd_0864		trd_0864	844382	844957	+	GTP-binding domain protein		gene	gene857	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0864
trd_0865	trd_0865		trd_0865	845002	845598	+	putative exopolyphosphatase		gene	gene858	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0865
trd_0866	trd_0866		trd_0866	847124	847738	-	conserved hypothetical protein		gene	gene860	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0866
trd_0867	trd_0867	purH	purH	845613	847127	+	bifunctional purine biosynthesis protein PurH	identified by match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355	gene	gene859	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0867
trd_0868	trd_0868		trd_0868	847731	848924	-	conserved hypothetical protein		gene	gene861	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0868
trd_0869	trd_0869		trd_0869	848921	850093	-	conserved hypothetical protein		gene	gene862	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0869
trd_0870	trd_0870		trd_0870	850110	852419	-	G5 domain family		gene	gene863	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0870
trd_0871	trd_0871		trd_0871	852567	852950	+	putative endoribonuclease L-PSP	identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004	gene	gene864	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0871
trd_0872	trd_0872		trd_0872	853002	853075	+	tRNA-Val		tRNA	gene865	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0872
trd_0873	trd_0873		trd_0873	853265	853735	+	transcription elongation factor greA	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449	gene	gene866	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0873
trd_0874	trd_0874	lysS	lysS	853815	855404	+	lysyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499	gene	gene867	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0874
trd_0875	trd_0875		trd_0875	856532	857383	-	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene868	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0875
trd_0876	trd_0876		trd_0876	857383	858285	-	binding-protein-dependent transport systems inner membrane component	identified by match to protein family HMM PF00528	gene	gene869	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0876
trd_0878	trd_0878		trd_0878	858406	859629	-	polyamine ABC trasnporter%2C periplasmic polyamine-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01409	gene	gene870	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0878
trd_0879	trd_0879		trd_0879	859680	861296	-	Peptidase family M20/M25/M40		gene	gene871	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0879
trd_0880	trd_0880		trd_0880	861339	862568	-	putative dehydrogenase protein	identified by match to protein family HMM PF01266	gene	gene872	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0880
trd_0881	trd_0881		trd_0881	862582	863715	-	ABC transporter ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402%3B match to protein family HMM TIGR01187	gene	gene873	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0881
trd_0882	trd_0882		trd_0882	863915	865540	-	putative carboxyltransferase subunit of acetyl-CoA carboxylase	identified by match to protein family HMM PF01039%3B match to protein family HMM PF03255%3B match to protein family HMM TIGR00513	gene	gene874	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0882
trd_0883	trd_0883		trd_0883	865577	865768	+	hypothetical protein	identified by glimmer%3B putative	gene	gene875	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0883
trd_0884	trd_0884	otsB	otsB	867288	868079	-	trehalose-phosphatase	identified by match to protein family HMM PF02358%3B match to protein family HMM TIGR00685%3B match to protein family HMM TIGR01484	gene	gene877	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0884
trd_0885	trd_0885		trd_0885	865819	867294	+	conserved hypothetical protein		gene	gene876	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0885
trd_0886	trd_0886		trd_0886	868173	869465	+	transporter%2C major facilitator family	identified by match to protein family HMM PF07690	gene	gene878	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0886
trd_0887	trd_0887		trd_0887	869471	870673	-	putative FAD dependent oxidoreductase	identified by match to protein family HMM PF01266	gene	gene879	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0887
trd_0888	trd_0888		trd_0888	870685	871173	-	CBS domain protein/ACT domain protein	identified by match to protein family HMM PF00571	gene	gene880	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0888
trd_0889	trd_0889		trd_0889	871424	872572	+	putative FAD dependent oxidoreductase	identified by match to protein family HMM PF01266	gene	gene881	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0889
trd_0890	trd_0890		trd_0890	872599	872889	+	Protein of unknown function (DUF503) superfamily	identified by match to protein family HMM PF04456	gene	gene882	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0890
trd_0891	trd_0891		trd_0891	872932	873183	-	hypothetical protein	identified by glimmer%3B putative	gene	gene883	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0891
trd_0892	trd_0892		trd_0892	873310	873435	-	hypothetical protein	identified by glimmer%3B putative	gene	gene884	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0892
trd_0893	trd_0893		trd_0893	874022	874894	-	DnaJ domain protein	identified by match to protein family HMM PF00226	gene	gene885	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0893
trd_0894	trd_0894		trd_0894	874986	876662	+	acetolactate synthase	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene886	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0894
trd_0895	trd_0895		trd_0895	876683	876964	+	hypothetical protein	identified by glimmer%3B putative	gene	gene887	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0895
trd_0896	trd_0896		trd_0896	877315	877461	-	hypothetical protein	identified by glimmer%3B putative	gene	gene888	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0896
trd_0897	trd_0897		trd_0897	877433	877525	+	tRNA-Sec		tRNA	gene889	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0897
trd_0898	trd_0898		trd_0898	877886	878143	+	hypothetical protein	identified by glimmer%3B putative	gene	gene890	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0898
trd_0899	trd_0899		trd_0899	878433	879332	+	putative 5%2C10-methylenetetrahydrofolate reductase	identified by match to protein family HMM PF02219	gene	gene891	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0899
trd_0900	trd_0900	fhs	fhs	879329	880984	+	formate--tetrahydrofolate ligase	identified by match to protein family HMM PF01268	gene	gene892	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0900
trd_0901	trd_0901		trd_0901	881037	882449	+	putative aminomethyltransferase		gene	gene893	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0901
trd_0902	trd_0902		trd_0902	883036	884226	+	putative ABC transporter substrate-binding protein	identified by match to protein family HMM PF09084	gene	gene894	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0902
trd_0903	trd_0903		trd_0903	884404	885333	+	conserved hypothetical protein		gene	gene895	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0903
trd_0904	trd_0904		trd_0904	885330	886061	+	LmbE-related protein	identified by match to protein family HMM PF02585	gene	gene896	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0904
trd_0905	trd_0905		trd_0905	886081	886764	+	demethylmenaquinone methyltransferase	identified by match to protein family HMM PF03737	gene	gene897	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0905
trd_0906	trd_0906		trd_0906	886781	887761	+	catechol 2%2C3-dioxygenase	identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR03211	gene	gene898	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0906
trd_0907	trd_0907		trd_0907	888280	889731	+	polyglutamate synthase CapA		gene	gene899	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0907
trd_0908	trd_0908		trd_0908	889961	890034	+	tRNA-Asp		tRNA	gene900	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0908
trd_0909	trd_0909		trd_0909	890084	890260	-	hypothetical protein	identified by glimmer%3B putative	gene	gene901	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0909
trd_0910	trd_0910		trd_0910	890428	891213	-	oxidoreductase%2C short chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene902	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0910
trd_0911	trd_0911		trd_0911	891357	892496	+	putative isomerase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene903	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0911
trd_0912	trd_0912		trd_0912	892753	893802	+	mannonate dehydratase	identified by match to protein family HMM PF03786	gene	gene904	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0912
trd_0913	trd_0913		trd_0913	893972	895234	+	conserved hypothetical protein	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM PF02655	gene	gene905	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0913
trd_0914	trd_0914		trd_0914	895243	895551	-	YggX	identified by match to protein family HMM PF04362	gene	gene906	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0914
trd_0915	trd_0915		trd_0915	896136	896318	+	hypothetical protein	identified by glimmer%3B putative	gene	gene907	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0915
trd_0916	trd_0916		trd_0916	896456	897457	-	GDP-6-deoxy-D-lyxo-4-hexulose reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene908	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0916
trd_0917	trd_0917	metK	metK	897477	898715	-	S-adenosylmethionine synthetase	identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034	gene	gene909	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0917
trd_0918	trd_0918	ahcY	ahcY	898761	900029	-	adenosylhomocysteinase	identified by match to protein family HMM PF00670%3B match to protein family HMM PF02826%3B match to protein family HMM PF05221%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00936	gene	gene910	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0918
trd_0919	trd_0919		trd_0919	900026	901123	-	initiation factor 2b family protein	identified by match to protein family HMM PF01008%3B match to protein family HMM TIGR00524	gene	gene911	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0919
trd_0920	trd_0920		trd_0920	901120	902808	-	3-dehydroquinate synthase	identified by match to protein family HMM PF01121%3B match to protein family HMM PF01202%3B match to protein family HMM PF01761%3B match to protein family HMM TIGR01357	gene	gene912	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0920
trd_0921	trd_0921	mdh	mdh	902946	903875	+	malate dehydrogenase%2C NAD-dependent	identified by match to protein family HMM PF00056%3B match to protein family HMM PF02866%3B match to protein family HMM TIGR01763	gene	gene913	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0921
trd_0922	trd_0922		trd_0922	905229	906140	-	Integral membrane protein DUF6	identified by match to protein family HMM PF00892	gene	gene915	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0922
trd_0923	trd_0923		trd_0923	903904	905232	+	probable molybdopterin biosynthesis moea protein	identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177	gene	gene914	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0923
trd_0924	trd_0924		trd_0924	906279	907214	+	putative ROK-family transcriptional regulator	identified by match to protein family HMM PF00480	gene	gene916	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0924
trd_0925	trd_0925		trd_0925	907300	907437	+	hypothetical protein	identified by glimmer%3B putative	gene	gene917	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0925
trd_0926	trd_0926		trd_0926	907734	907859	+	hypothetical protein	identified by glimmer%3B putative	gene	gene918	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0926
trd_0927	trd_0927		trd_0927	907886	909526	+	hypothetical protein	identified by glimmer%3B putative	gene	gene919	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0927
trd_0928	trd_0928		trd_0928	909532	910467	+	phycocyanin alpha phycocyanobilin lyase related protein	identified by match to protein family HMM PF02985%3B match to protein family HMM PF03130	gene	gene920	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0928
trd_0929	trd_0929		trd_0929	910461	911483	+	femAB family protein	identified by match to protein family HMM PF02388	gene	gene921	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0929
trd_0930	trd_0930		trd_0930	911488	913005	+	UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01085	gene	gene922	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0930
trd_0931	trd_0931		trd_0931	913029	913958	+	acylaminoacyl-peptidase	identified by match to protein family HMM PF07676	gene	gene923	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0931
trd_0932	trd_0932		trd_0932	913972	914106	+	hypothetical protein	identified by glimmer%3B putative	gene	gene924	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0932
trd_0933	trd_0933		trd_0933	914410	914496	+	tRNA-Leu		tRNA	gene925	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0933
trd_0934	trd_0934		trd_0934	914467	914637	+	hypothetical protein	identified by glimmer%3B putative	gene	gene926	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0934
trd_0935	trd_0935		trd_0935	914950	915192	-	hypothetical protein	identified by glimmer%3B putative	gene	gene927	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0935
trd_0936	trd_0936		trd_0936	915413	915700	-	putative glutathione-dependent formaldehyde dehydrogenase		gene	gene928	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0936
trd_0937	trd_0937		trd_0937	915743	915880	-	hypothetical protein	identified by glimmer%3B putative	gene	gene929	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0937
trd_0938	trd_0938		trd_0938	915997	916072	-	tRNA-Gly		tRNA	gene930	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0938
trd_0939	trd_0939		trd_0939	916235	916387	+	hypothetical protein	identified by glimmer%3B putative	gene	gene931	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0939
trd_0940	trd_0940		trd_0940	917037	918347	-	putative serine/threonine protein phosphatase	identified by match to protein family HMM PF00149	gene	gene932	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0940
trd_0941	trd_0941		trd_0941	918605	918679	+	tRNA-Met		tRNA	gene933	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0941
trd_0942	trd_0942		trd_0942	918714	919085	+	Domain of unknown function DUF143 superfamily	identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090	gene	gene934	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0942
trd_0943	trd_0943		trd_0943	919266	919667	-	conserved hypothetical protein		gene	gene935	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0943
trd_0944	trd_0944		trd_0944	919675	920931	-	putative trehalose phosphorylase	identified by match to protein family HMM PF00534	gene	gene936	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0944
trd_0945	trd_0945	pncB	pncB	920947	922311	-	putative nicotinate phosphoribosyltransferase	identified by match to protein family HMM PF01729%3B match to protein family HMM PF04095%3B match to protein family HMM TIGR01513	gene	gene937	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0945
trd_0946	trd_0946		trd_0946	922336	923037	-	putative RNA polymerase sigma factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene938	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0946
trd_0947	trd_0947		trd_0947	923034	923447	-	hypothetical protein	identified by glimmer%3B putative	gene	gene939	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0947
trd_0948	trd_0948		trd_0948	923616	924047	+	heat shock protein%2C Hsp20 family	identified by match to protein family HMM PF00011	gene	gene940	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0948
trd_0949	trd_0949		trd_0949	924123	925892	-	ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent	identified by match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM TIGR02504	gene	gene941	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0949
trd_0950	trd_0950		trd_0950	926064	926855	+	conserved hypothetical protein		gene	gene942	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0950
trd_0951	trd_0951		trd_0951	926852	927769	+	Peptidase family T4	identified by match to protein family HMM PF03576	gene	gene943	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0951
trd_0952	trd_0952		trd_0952	927847	928704	+	putative conserved protein	identified by match to protein family HMM PF01261	gene	gene944	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0952
trd_0953	trd_0953	rpsI	rpsI	928762	929193	-	ribosomal protein S9	identified by match to protein family HMM PF00380	gene	gene945	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0953
trd_0954	trd_0954	rplM	rplM	929221	929688	-	ribosomal protein L13	identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066	gene	gene946	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0954
trd_0955	trd_0955	truA	truA	929714	930553	-	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071	gene	gene947	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0955
trd_0956	trd_0956	rplQ	rplQ	930573	930926	-	ribosomal protein L17	identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059	gene	gene948	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0956
trd_0957	trd_0957	rpoA	rpoA	930929	931909	-	DNA-directed RNA polymerase%2C alpha subunit	identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027	gene	gene949	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0957
trd_0958	trd_0958	rpsD	rpsD	931947	932600	-	ribosomal protein S4	identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017	gene	gene950	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0958
trd_0959	trd_0959	rpsK	rpsK	932630	933043	-	ribosomal protein S11	identified by match to protein family HMM PF00411	gene	gene951	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0959
trd_0960	trd_0960	rpsM	rpsM	933074	933460	-	ribosomal protein S13p/S18e	identified by match to protein family HMM PF00416	gene	gene952	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0960
trd_0961	trd_0961	rpmJ	rpmJ	933470	933583	-	ribosomal protein L36	identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022	gene	gene953	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0961
trd_0962	trd_0962	infA	infA	933603	933848	-	translation initiation factor IF-1	identified by match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008	gene	gene954	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0962
trd_0963	trd_0963	map	map	933912	934661	-	methionine aminopeptidase%2C type I	identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500	gene	gene955	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0963
trd_0964	trd_0964		trd_0964	934646	935347	-	adenylate kinase	identified by match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351	gene	gene956	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0964
trd_0965	trd_0965		trd_0965	935357	936655	-	preprotein translocase%2C SecY subunit	identified by match to protein family HMM PF00344%3B match to protein family HMM TIGR00967	gene	gene957	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0965
trd_0966	trd_0966	rplO	rplO	936655	937095	-	ribosomal protein L15	identified by match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071	gene	gene958	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0966
trd_0967	trd_0967	rpmD	rpmD	937109	937339	-	ribosomal protein L30	identified by match to protein family HMM PF00327%3B match to protein family HMM TIGR01308	gene	gene959	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0967
trd_0968	trd_0968	rpsE	rpsE	937302	937850	-	ribosomal protein S5	identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021	gene	gene960	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0968
trd_0969	trd_0969	rplR	rplR	937876	938250	-	ribosomal protein L18	identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060	gene	gene961	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0969
trd_0970	trd_0970		trd_0970	938328	938882	-	50S ribosomal protein L6	identified by match to protein family HMM PF00347	gene	gene962	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0970
trd_0971	trd_0971	rpsH	rpsH	938898	939305	-	ribosomal protein S8	identified by match to protein family HMM PF00410	gene	gene963	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0971
trd_0972	trd_0972		trd_0972	939536	940102	-	50S ribosomal protein L5	identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673	gene	gene964	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0972
trd_0973	trd_0973	rplX	rplX	940116	940460	-	ribosomal protein L24	identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079	gene	gene965	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0973
trd_0974	trd_0974	rplN	rplN	940473	940841	-	ribosomal protein L14	identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067	gene	gene966	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0974
trd_0975	trd_0975		trd_0975	940838	941197	-	30S ribosomal subunit protein S17	identified by match to protein family HMM PF00366	gene	gene967	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0975
trd_0976	trd_0976		trd_0976	941204	941491	-	50S ribosomal protein L29	identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012	gene	gene968	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0976
trd_0977	trd_0977	rplP	rplP	941488	941928	-	ribosomal protein L16	identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164	gene	gene969	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0977
trd_0978	trd_0978	rpsC	rpsC	941946	942617	-	ribosomal protein S3	identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009	gene	gene970	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0978
trd_0979	trd_0979	rplV	rplV	942610	942966	-	ribosomal protein L22	identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044	gene	gene971	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0979
trd_0980	trd_0980	rpsS	rpsS	942985	943269	-	ribosomal protein S19	identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050	gene	gene972	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0980
trd_0981	trd_0981	rplB	rplB	943289	944116	-	ribosomal protein L2	identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171	gene	gene973	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0981
trd_0982	trd_0982	rplW	rplW	944135	944449	-	ribosomal protein L23	identified by match to protein family HMM PF00276	gene	gene974	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0982
trd_0983	trd_0983	rplD	rplD	944446	945084	-	ribosomal protein L4/L1 family	identified by match to protein family HMM PF00573	gene	gene975	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0983
trd_0984	trd_0984	rplC	rplC	945099	945743	-	ribosomal protein L3	identified by match to protein family HMM PF00297	gene	gene976	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0984
trd_0985	trd_0985	rpsJ	rpsJ	945833	946150	-	ribosomal protein S10	identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049	gene	gene977	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0985
trd_0986	trd_0986	tuf	tuf	946164	947366	-	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene978	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0986
trd_0987	trd_0987	fusA	fusA	947419	949527	-	translation elongation factor G	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484	gene	gene979	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0987
trd_0988	trd_0988	rpsG	rpsG	949568	950038	-	ribosomal protein S7	identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029	gene	gene980	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0988
trd_0989	trd_0989	rpsL	rpsL	950173	950601	-	ribosomal protein S12	identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981	gene	gene981	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0989
trd_0990	trd_0990	rpoC	rpoC	950727	955106	-	DNA-directed RNA polymerase%2C beta' subunit	identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386	gene	gene982	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0990
trd_0991	trd_0991	rpoB	rpoB	955125	958613	-	DNA-directed RNA polymerase%2C beta subunit	identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013	gene	gene983	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0991
trd_0992	trd_0992		trd_0992	958914	959042	+	hypothetical protein	identified by glimmer%3B putative	gene	gene984	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0992
trd_0993	trd_0993		trd_0993	959205	959280	+	tRNA-Arg		tRNA	gene985	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0993
trd_0994	trd_0994		trd_0994	959299	959574	-	hypothetical protein	identified by glimmer%3B putative	gene	gene986	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0994
trd_0995	trd_0995		trd_0995	959792	960352	+	Protein of unknown function%2C DUF583 family	identified by match to protein family HMM PF04519	gene	gene987	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0995
trd_0996	trd_0996		trd_0996	960349	960798	+	protein of unknown function	identified by match to protein family HMM PF04519	gene	gene988	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0996
trd_0997	trd_0997		trd_0997	960876	961778	+	hypothetical protein	identified by glimmer%3B putative	gene	gene989	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0997
trd_0998	trd_0998	rpsB	rpsB	961941	962813	+	ribosomal protein S2	identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011	gene	gene990	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0998
trd_0999	trd_0999	tsf	tsf	962859	963437	+	translation elongation factor Ts	identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116	gene	gene991	http://www.ncbi.nlm.nih.gov/gene/?term=trd_0999
trd_1000	trd_1000	pyrH	pyrH	963434	964192	+	uridylate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075	gene	gene992	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1000
trd_1001	trd_1001	frr	frr	964227	964784	+	ribosome recycling factor	identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496	gene	gene993	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1001
trd_1002	trd_1002	uppS	uppS	964579	965562	+	undecaprenyl diphosphate synthase	identified by match to protein family HMM PF01255%3B match to protein family HMM TIGR00055	gene	gene994	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1002
trd_1003	trd_1003	cdsA	cdsA	965544	966413	+	phosphatidate cytidylyltransferase	identified by match to protein family HMM PF01148	gene	gene995	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1003
trd_1004	trd_1004		trd_1004	967564	968271	-	conserved hypothetical protein		gene	gene997	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1004
trd_1005	trd_1005	dxr	dxr	966410	967567	+	1-deoxy-D-xylulose 5-phosphate reductoisomerase	identified by match to protein family HMM PF02670%3B match to protein family HMM PF08436%3B match to protein family HMM TIGR00243	gene	gene996	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1005
trd_1006	trd_1006		trd_1006	968129	968257	-	hypothetical protein	identified by glimmer%3B putative	gene	gene998	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1006
trd_1007	trd_1007		trd_1007	968271	968684	-	Uncharacterized ACR	identified by match to protein family HMM PF02643	gene	gene999	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1007
trd_1008	trd_1008		trd_1008	968736	970871	+	Copper resistance protein CopC	identified by match to protein family HMM PF04234%3B match to protein family HMM PF05425	gene	gene1000	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1008
trd_1009	trd_1009		trd_1009	970888	971799	-	type II secretion system protein	identified by match to protein family HMM PF00482	gene	gene1001	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1009
trd_1010	trd_1010		trd_1010	971823	972794	-	Bacterial type II secretion system protein F domain	identified by match to protein family HMM PF00482	gene	gene1002	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1010
trd_1011	trd_1011		trd_1011	972798	974249	-	CpaF	identified by match to protein family HMM PF00437	gene	gene1003	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1011
trd_1012	trd_1012		trd_1012	974255	975514	-	putative two-component response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01656	gene	gene1004	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1012
trd_1013	trd_1013		trd_1013	975529	976524	-	putative membrane fimbriae assembly protein	identified by match to protein family HMM PF08666%3B match to protein family HMM TIGR03177	gene	gene1005	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1013
trd_1014	trd_1014		trd_1014	976651	979422	-	Family of unknown function (DUF470) family	identified by match to protein family HMM PF04329%3B match to protein family HMM PF04330%3B match to protein family HMM PF04331%3B match to protein family HMM TIGR00374	gene	gene1006	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1014
trd_1016	trd_1016	rrfG	rrfG	979443	979564	-	5S ribosomal RNA		rRNA	gene1007	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1016
trd_1017	trd_1017	rrlG	rrlG	979669	982636	-	23S ribosomal RNA		rRNA	gene1008	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1017
trd_1018	trd_1018		trd_1018	982770	982842	-	tRNA-Ala		tRNA	gene1009	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1018
trd_1019	trd_1019		trd_1019	982855	982931	-	tRNA-Ile		tRNA	gene1010	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1019
trd_1020	trd_1020	rrsG	rrsG	983135	984659	-	16S ribosomal RNA		rRNA	gene1011	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1020
trd_1021	trd_1021		trd_1021	985004	985141	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1012	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1021
trd_1022	trd_1022		trd_1022	985129	985905	+	probable glutamine amidotransferase	identified by match to protein family HMM PF00117%3B match to protein family HMM PF07722	gene	gene1013	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1022
trd_1023	trd_1023	lon	lon	985966	988464	-	ATP-dependent protease La	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763	gene	gene1014	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1023
trd_1024	trd_1024		trd_1024	988482	988931	-	putative heat shock protein%2C Hsp20 family	identified by match to protein family HMM PF00011	gene	gene1015	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1024
trd_1025	trd_1025		trd_1025	989065	990006	-	UbiA prenyltransferase:PepSY-associated TM helix	identified by match to protein family HMM PF01040	gene	gene1016	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1025
trd_1026	trd_1026		trd_1026	989999	991777	-	conserved hypothetical protein		gene	gene1017	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1026
trd_1027	trd_1027		trd_1027	992012	993016	+	heptaprenyl diphosphate synthase component II	identified by match to protein family HMM PF00348	gene	gene1018	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1027
trd_1028	trd_1028		trd_1028	993018	993608	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1019	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1028
trd_1029	trd_1029		trd_1029	993689	994618	-	inosine-uridine preferring nucleoside hydrolase	identified by match to protein family HMM PF01156	gene	gene1020	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1029
trd_1030	trd_1030		trd_1030	994692	996317	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1021	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1030
trd_1031	trd_1031		trd_1031	996327	997637	-	putative hydroxypyruvate reductase	identified by match to protein family HMM PF05161	gene	gene1022	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1031
trd_1032	trd_1032		trd_1032	997619	998587	-	pseudouridine synthase%2C RluA family	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005	gene	gene1023	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1032
trd_1033	trd_1033	lspA	lspA	998584	999093	-	signal peptidase II	identified by match to protein family HMM PF01252%3B match to protein family HMM TIGR00077	gene	gene1024	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1033
trd_1034	trd_1034	radA	radA	1000338	1001750	-	DNA repair protein RadA	identified by match to protein family HMM TIGR00416	gene	gene1025	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1034
trd_1035	trd_1035		trd_1035	1001854	1004307	-	ClpC ATPase	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02151%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728	gene	gene1026	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1035
trd_1036	trd_1036		trd_1036	1004569	1005900	-	30S ribosomal protein S1	identified by match to protein family HMM PF00575	gene	gene1027	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1036
trd_1037	trd_1037		trd_1037	1006056	1007174	-	soluble hydrogenase 42 kDa subunit	identified by match to protein family HMM PF00266	gene	gene1028	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1037
trd_1038	trd_1038		trd_1038	1007171	1008634	-	O-Antigen Polymerase family	identified by match to protein family HMM PF04932	gene	gene1029	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1038
trd_1039	trd_1039		trd_1039	1008760	1009077	+	putative transcriptional regulator superfamily	identified by match to protein family HMM PF01638	gene	gene1030	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1039
trd_1040	trd_1040		trd_1040	1009302	1011293	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene1031	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1040
trd_1041	trd_1041	moaA	moaA	1011360	1012409	-	molybdenum cofactor biosynthesis protein A	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666	gene	gene1032	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1041
trd_1042	trd_1042		trd_1042	1012531	1013235	-	GlcNAc-PI de-N-acetylase family	identified by match to protein family HMM PF02585	gene	gene1033	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1042
trd_1043	trd_1043	hisS	hisS	1013222	1014610	-	histidyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442	gene	gene1034	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1043
trd_1044	trd_1044		trd_1044	1014607	1015113	-	molybdenum cofactor biosynthesis protein B	identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177	gene	gene1035	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1044
trd_1045	trd_1045		trd_1045	1015110	1016333	-	deacetylase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene1036	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1045
trd_1046	trd_1046		trd_1046	1016326	1016703	-	conserved hypothetical protein TIGR00252	identified by match to protein family HMM PF02021%3B match to protein family HMM TIGR00252	gene	gene1037	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1046
trd_1047	trd_1047	rnhB	rnhB	1016707	1017366	-	ribonuclease HII	identified by match to protein family HMM PF01351	gene	gene1038	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1047
trd_1048	trd_1048	rplS	rplS	1017378	1017749	-	ribosomal protein L19	identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024	gene	gene1039	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1048
trd_1049	trd_1049		trd_1049	1017849	1019723	-	5-methyltetrahydrofolate S-homocysteine methyltransferase	identified by match to protein family HMM PF02219%3B match to protein family HMM PF02574	gene	gene1040	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1049
trd_1050	trd_1050		trd_1050	1019888	1020829	+	group3 RNA polymerase sigma factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene1041	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1050
trd_1051	trd_1051		trd_1051	1020829	1022268	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1042	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1051
trd_1052	trd_1052		trd_1052	1022275	1023189	-	CAAX amino terminal protease family	identified by match to protein family HMM PF02517	gene	gene1043	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1052
trd_1053	trd_1053	glyS	glyS	1024134	1025540	-	glycyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00389	gene	gene1045	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1053
trd_1054	trd_1054		trd_1054	1023261	1024142	+	stage 0 sporulation protein J	identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180	gene	gene1044	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1054
trd_1055	trd_1055		trd_1055	1025613	1026608	-	tyrosine recombinase xerD	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899	gene	gene1046	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1055
trd_1056	trd_1056	ald	ald	1026627	1027754	-	alanine dehydrogenase	identified by match to protein family HMM PF01262%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00518	gene	gene1047	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1056
trd_1057	trd_1057		trd_1057	1028021	1029337	+	putative membrane-associated zinc metalloprotease	identified by match to protein family HMM PF00595%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054	gene	gene1048	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1057
trd_1058	trd_1058	ispG	ispG	1029444	1030595	+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612	gene	gene1049	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1058
trd_1059	trd_1059		trd_1059	1030616	1031581	+	kinase%2C pfkB family	identified by match to protein family HMM PF00294	gene	gene1050	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1059
trd_1060	trd_1060	ppc	ppc	1032709	1035495	-	phosphoenolpyruvate carboxylase	identified by match to protein family HMM PF00311	gene	gene1052	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1060
trd_1061	trd_1061		trd_1061	1031568	1032746	+	PBS lyase HEAT-like repeat domain protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF03130%3B match to protein family HMM PF08331	gene	gene1051	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1061
trd_1062	trd_1062		trd_1062	1035633	1036412	+	Bvg accessory factor	identified by match to protein family HMM PF03309%3B match to protein family HMM TIGR00671	gene	gene1053	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1062
trd_1063	trd_1063		trd_1063	1036425	1037546	-	putative sgc region protein sgcX	identified by match to protein family HMM PF05343	gene	gene1054	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1063
trd_1064	trd_1064	fusA	fusA	1037633	1039795	+	translation elongation factor G	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484	gene	gene1055	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1064
trd_1065	trd_1065		trd_1065	1039873	1040301	+	ribonuclease HI		gene	gene1056	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1065
trd_1066	trd_1066		trd_1066	1040547	1040620	+	tRNA-Val		tRNA	gene1057	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1066
trd_1067	trd_1067	thrS	thrS	1041049	1042839	+	threonyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418	gene	gene1058	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1067
trd_1068	trd_1068		trd_1068	1042859	1043824	-	renal dipeptidase family protein	identified by match to protein family HMM PF01244	gene	gene1059	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1068
trd_1069	trd_1069		trd_1069	1043835	1044704	-	putative methyltransferase	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1060	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1069
trd_1070	trd_1070		trd_1070	1044698	1045582	-	N-acetylglucosamine-6-phoshatase or p-nitrophenyl phosphatase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01460	gene	gene1061	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1070
trd_1071	trd_1071		trd_1071	1045636	1046850	+	probable peptidic bond hydrolase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01910	gene	gene1062	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1071
trd_1072	trd_1072		trd_1072	1046854	1047588	-	domain of unknown function protein	identified by match to protein family HMM PF03737	gene	gene1063	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1072
trd_1073	trd_1073		trd_1073	1047605	1048459	-	putative lipoprotein		gene	gene1064	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1073
trd_1074	trd_1074		trd_1074	1048652	1049509	-	ABC-2 type transporter superfamily	identified by match to protein family HMM PF01061	gene	gene1065	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1074
trd_1075	trd_1075		trd_1075	1049466	1050260	-	multidrug ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1066	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1075
trd_1076	trd_1076		trd_1076	1050247	1050708	-	possible transcriptional regulatory protein	identified by match to protein family HMM PF01047	gene	gene1067	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1076
trd_1077	trd_1077		trd_1077	1050752	1051528	+	conserved hypothetical protein		gene	gene1068	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1077
trd_1078	trd_1078	moaC	moaC	1052753	1053253	-	molybdenum cofactor biosynthesis protein C	identified by match to protein family HMM PF01967%3B match to protein family HMM TIGR00581	gene	gene1070	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1078
trd_1079	trd_1079		trd_1079	1051653	1052765	+	tRNA methyl transferase	identified by match to protein family HMM PF03054	gene	gene1069	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1079
trd_1080	trd_1080		trd_1080	1053623	1054978	-	aminotransferase%2C class III	identified by match to protein family HMM PF00202	gene	gene1071	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1080
trd_1081	trd_1081		trd_1081	1055292	1055762	+	transcription elongation factor greA	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462	gene	gene1072	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1081
trd_1082	trd_1082		trd_1082	1055776	1056255	+	putative YbaK / prolyl-tRNA synthetases associated domain	identified by match to protein family HMM PF04073	gene	gene1073	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1082
trd_1083	trd_1083		trd_1083	1056265	1057146	-	hypothetical sugar kinase	identified by match to protein family HMM PF00294	gene	gene1074	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1083
trd_1084	trd_1084		trd_1084	1057183	1057869	-	protein jag	identified by match to protein family HMM PF01424	gene	gene1075	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1084
trd_1085	trd_1085		trd_1085	1057912	1058850	-	inner membrane protein oxaA	identified by match to protein family HMM PF02096%3B match to protein family HMM TIGR03592	gene	gene1076	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1085
trd_1086	trd_1086		trd_1086	1058895	1059104	-	conserved hypothetical protein TIGR00278	identified by match to protein family HMM PF01809%3B match to protein family HMM TIGR00278	gene	gene1077	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1086
trd_1087	trd_1087	rnpA	rnpA	1059101	1059490	-	ribonuclease P protein component	identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188	gene	gene1078	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1087
trd_1088	trd_1088	rpmH	rpmH	1059498	1059668	-	ribosomal protein L34	identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030	gene	gene1079	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1088
trd_1089	trd_1089		trd_1089	1059761	1060918	-	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene1080	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1089
trd_1090	trd_1090		trd_1090	1061106	1063553	+	GAF domain protein	identified by match to protein family HMM PF01590	gene	gene1081	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1090
trd_1091	trd_1091		trd_1091	1063554	1064849	+	response regulator	identified by match to protein family HMM PF01590%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene1082	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1091
trd_1092	trd_1092		trd_1092	1065467	1066729	-	putative major facilitator superfamily	identified by match to protein family HMM PF07690	gene	gene1083	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1092
trd_1093	trd_1093	ileS	ileS	1067329	1070508	+	isoleucyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM TIGR00392	gene	gene1084	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1093
trd_1094	trd_1094		trd_1094	1070505	1071266	+	conserved hypothetical protein	identified by match to protein family HMM PF08242	gene	gene1085	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1094
trd_1095	trd_1095		trd_1095	1071448	1072449	+	Amidohydrolase family	identified by match to protein family HMM PF04909	gene	gene1086	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1095
trd_1096	trd_1096		trd_1096	1072452	1073642	+	6-phosphofructokinase isozyme 1	identified by match to protein family HMM PF00365	gene	gene1087	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1096
trd_1097	trd_1097		trd_1097	1073703	1073996	-	Antibiotic biosynthesis monooxygenase domain protein	identified by match to protein family HMM PF03992	gene	gene1088	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1097
trd_1098	trd_1098	murI	murI	1074242	1074979	+	aspartate racemase	identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00035	gene	gene1089	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1098
trd_1099	trd_1099		trd_1099	1075476	1075937	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1090	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1099
trd_1100	trd_1100		trd_1100	1075949	1077388	+	putative FesM	identified by match to protein family HMM PF00037	gene	gene1091	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1100
trd_1101	trd_1101		trd_1101	1077402	1077965	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1092	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1101
trd_1102	trd_1102		trd_1102	1077962	1078582	+	senC homolog	identified by match to protein family HMM PF02630	gene	gene1093	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1102
trd_1103	trd_1103		trd_1103	1078647	1080041	-	taurine--pyruvate aminotransferase	identified by match to protein family HMM PF00202	gene	gene1094	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1103
trd_1104	trd_1104		trd_1104	1080623	1080736	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1095	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1104
trd_1105	trd_1105		trd_1105	1080898	1085424	+	glutamate synthase [nadph] large chain precursor	identified by match to protein family HMM PF00310%3B match to protein family HMM PF01493%3B match to protein family HMM PF01645%3B match to protein family HMM PF04898	gene	gene1096	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1105
trd_1106	trd_1106		trd_1106	1085510	1085860	-	Nitrogen regulatory protein P-II	identified by match to protein family HMM PF00543	gene	gene1097	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1106
trd_1107	trd_1107	amt	amt	1085857	1087149	-	ammonium transporter	identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836	gene	gene1098	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1107
trd_1108	trd_1108		trd_1108	1087172	1087321	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1099	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1108
trd_1109	trd_1109	mutS	mutS	1088704	1091358	-	DNA mismatch repair protein MutS	identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070	gene	gene1101	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1109
trd_1110	trd_1110		trd_1110	1087478	1088740	+	putative MFS transporter	identified by match to protein family HMM PF07690	gene	gene1100	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1110
trd_1111	trd_1111		trd_1111	1091357	1091566	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1102	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1111
trd_1112	trd_1112		trd_1112	1091928	1092209	+	conserved hypothetical protein		gene	gene1103	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1112
trd_1113	trd_1113		trd_1113	1092217	1094133	+	putative sodium/solute symporter	identified by match to protein family HMM PF00474%3B match to protein family HMM TIGR00813	gene	gene1104	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1113
trd_1114	trd_1114		trd_1114	1094467	1095153	-	DNA polymerase III epsilon subunit	identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR00573	gene	gene1106	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1114
trd_1115	trd_1115		trd_1115	1094220	1094480	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1105	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1115
trd_1116	trd_1116		trd_1116	1095150	1097057	-	CBS domain protein	identified by match to protein family HMM PF00027%3B match to protein family HMM PF00571%3B match to protein family HMM PF03445	gene	gene1107	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1116
trd_1117	trd_1117		trd_1117	1097154	1099115	+	acetyl-coenzyme A synthetase	identified by match to protein family HMM PF00501	gene	gene1108	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1117
trd_1118	trd_1118		trd_1118	1099096	1100076	+	YwfM	identified by match to protein family HMM PF00892	gene	gene1109	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1118
trd_1119	trd_1119		trd_1119	1100073	1102430	+	penicillin acylase II	identified by match to protein family HMM PF01804	gene	gene1110	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1119
trd_1120	trd_1120		trd_1120	1102532	1103959	-	putative membrane protein		gene	gene1111	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1120
trd_1121	trd_1121		trd_1121	1103979	1105886	-	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535%3B match to protein family HMM PF05157	gene	gene1112	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1121
trd_1122	trd_1122	hemA	hemA	1106024	1107244	-	glutamyl-tRNA reductase	identified by match to protein family HMM PF01488%3B match to protein family HMM PF05201%3B match to protein family HMM TIGR01035	gene	gene1113	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1122
trd_1123	trd_1123	hemL	hemL	1107241	1108533	-	glutamate-1-semialdehyde-2%2C1-aminomutase	identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00713	gene	gene1114	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1123
trd_1124	trd_1124	hemB	hemB	1108541	1109563	-	delta-aminolevulinic acid dehydratase	identified by match to protein family HMM PF00490	gene	gene1115	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1124
trd_1125	trd_1125	hemD	hemD	1109560	1111242	-	porphobilinogen deaminase	identified by match to protein family HMM PF01379%3B match to protein family HMM PF02602%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212	gene	gene1116	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1125
trd_1126	trd_1126		trd_1126	1111445	1112620	+	sulfide dehydrogenase	identified by match to protein family HMM PF07992	gene	gene1117	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1126
trd_1127	trd_1127	folE	folE	1112634	1113257	-	GTP cyclohydrolase I	identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR00063	gene	gene1118	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1127
trd_1128	trd_1128		trd_1128	1113904	1114767	-	CDP-alcohol phosphatidyltransferase family	identified by match to protein family HMM PF01066	gene	gene1119	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1128
trd_1129	trd_1129		trd_1129	1114757	1115542	-	2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase	identified by match to protein family HMM PF03328	gene	gene1120	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1129
trd_1130	trd_1130		trd_1130	1115560	1115742	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1121	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1130
trd_1131	trd_1131		trd_1131	1115847	1117451	+	cold-shock dead-box protein a	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880	gene	gene1122	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1131
trd_1132	trd_1132		trd_1132	1117680	1118426	+	conserved hypothetical protein TIGR01033	identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033	gene	gene1123	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1132
trd_1133	trd_1133		trd_1133	1118603	1119097	+	putative membrane protein		gene	gene1124	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1133
trd_1134	trd_1134		trd_1134	1119094	1120230	+	putative pyridoxal phosphate-dependent enzyme	identified by match to protein family HMM PF01212%3B match to protein family HMM PF03841	gene	gene1125	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1134
trd_1135	trd_1135		trd_1135	1120345	1121439	-	sugar ABC transportor%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402	gene	gene1126	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1135
trd_1136	trd_1136		trd_1136	1121530	1122375	-	inner membrane ABC transporter permease protein ycjP	identified by match to protein family HMM PF00528	gene	gene1127	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1136
trd_1137	trd_1137		trd_1137	1122377	1123321	-	putative sugar uptake ABC transporter permease protein	identified by match to protein family HMM PF00528	gene	gene1128	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1137
trd_1138	trd_1138		trd_1138	1123403	1124854	-	putative sugar uptake ABC transporter periplasmic solute-binding protein precursor	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01409	gene	gene1129	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1138
trd_1139	trd_1139		trd_1139	1125112	1127076	+	acetyl-coenzyme A synthetase	identified by match to protein family HMM PF00501	gene	gene1130	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1139
trd_1140	trd_1140		trd_1140	1127073	1127594	+	conserved hypothetical protein TIGR00026	identified by match to protein family HMM PF04075%3B match to protein family HMM TIGR00026	gene	gene1131	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1140
trd_1141	trd_1141		trd_1141	1127708	1130536	+	transaldolase and glucose-6-phosphate isomerase bifunctional protein	identified by match to protein family HMM PF00342%3B match to protein family HMM PF00923%3B match to protein family HMM TIGR00876	gene	gene1132	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1141
trd_1142	trd_1142	gnd	gnd	1130559	1131482	+	6-phosphogluconate dehydrogenase (decarboxylating)	identified by match to protein family HMM PF00393%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00872	gene	gene1133	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1142
trd_1143	trd_1143	zwf	zwf	1131479	1133023	+	glucose-6-phosphate 1-dehydrogenase	identified by match to protein family HMM PF00479%3B match to protein family HMM PF02781%3B match to protein family HMM TIGR00871	gene	gene1134	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1143
trd_1144	trd_1144		trd_1144	1133049	1134203	+	conserved hypothetical protein		gene	gene1135	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1144
trd_1145	trd_1145		trd_1145	1134998	1136176	-	putative permidine/putrescine ABC transporter%2Cperiplasmic spermidine/putrescine-binding protein	identified by match to protein family HMM PF01547	gene	gene1137	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1145
trd_1146	trd_1146	pgl	pgl	1134216	1135001	+	6-phosphogluconolactonase	identified by match to protein family HMM PF01182%3B match to protein family HMM TIGR01198	gene	gene1136	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1146
trd_1147	trd_1147		trd_1147	1136282	1136692	+	Protein of unknown function (DUF420) superfamily	identified by match to protein family HMM PF04238	gene	gene1138	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1147
trd_1148	trd_1148		trd_1148	1136700	1137809	+	phosphonoacetate hydrolase	identified by match to protein family HMM PF01663	gene	gene1139	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1148
trd_1149	trd_1149		trd_1149	1137806	1138765	+	probable nodulation ATP-binding ABC transporter protein	identified by match to protein family HMM PF00005	gene	gene1140	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1149
trd_1150	trd_1150		trd_1150	1138773	1139495	+	hypothetical protein	identified by match to protein family HMM PF01061%3B similar to B1496_F2_59	gene	gene1141	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1150
trd_1151	trd_1151		trd_1151	1139499	1140314	-	putative conserved hypothetical protein TIGR00104	identified by match to protein family HMM PF01980%3B match to protein family HMM TIGR00104	gene	gene1142	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1151
trd_1152	trd_1152		trd_1152	1140339	1141796	-	nitrate reductase (NAD(P)H)	identified by match to protein family HMM PF00174%3B match to protein family HMM PF03404	gene	gene1143	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1152
trd_1153	trd_1153		trd_1153	1141793	1142035	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1144	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1153
trd_1154	trd_1154		trd_1154	1142584	1143060	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1145	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1154
trd_1155	trd_1155		trd_1155	1143057	1143431	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1146	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1155
trd_1156	trd_1156		trd_1156	1143462	1144133	-	ribosomal protein L25%2C Ctc-form	identified by match to protein family HMM PF01386%3B match to protein family HMM TIGR00731	gene	gene1147	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1156
trd_1157	trd_1157		trd_1157	1144895	1146118	-	multidrug-efflux transporter	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene1148	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1157
trd_1158	trd_1158		trd_1158	1146350	1146928	+	transcriptional regulator%2C TetR family protein	identified by match to protein family HMM PF00440	gene	gene1149	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1158
trd_1159	trd_1159		trd_1159	1147413	1148351	+	phytoene synthetase	identified by match to protein family HMM PF00494	gene	gene1150	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1159
trd_1160	trd_1160		trd_1160	1148327	1149154	+	conserved hypothetical protein		gene	gene1151	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1160
trd_1161	trd_1161		trd_1161	1149151	1150329	+	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535	gene	gene1152	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1161
trd_1162	trd_1162		trd_1162	1150295	1151866	+	Protein of unknown function (DUF422) family	identified by match to protein family HMM PF04240	gene	gene1153	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1162
trd_1163	trd_1163		trd_1163	1151867	1153408	+	phytoene dehydrogenase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01593%3B match to protein family HMM TIGR02734	gene	gene1154	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1163
trd_1164	trd_1164	ispH	ispH	1153405	1154388	+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216	gene	gene1155	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1164
trd_1165	trd_1165		trd_1165	1154462	1157401	+	glycolate oxidase subunit	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01565%3B match to protein family HMM PF02754%3B match to protein family HMM PF02913	gene	gene1156	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1165
trd_1166	trd_1166	dnaA	dnaA	1157859	1159256	-	chromosomal replication initiator protein DnaA	identified by match to protein family HMM PF00308%3B match to protein family HMM PF08299%3B match to protein family HMM TIGR00362	gene	gene1158	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1166
trd_1167	trd_1167		trd_1167	1157440	1157865	+	conserved hypothetical protein		gene	gene1157	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1167
trd_1168	trd_1168		trd_1168	1159376	1159513	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1159	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1168
trd_1169	trd_1169		trd_1169	1159578	1160042	+	regulatory protein%2C MarR	identified by match to protein family HMM PF01022%3B match to protein family HMM PF01047%3B match to protein family HMM PF01978	gene	gene1160	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1169
trd_1170	trd_1170		trd_1170	1160039	1161667	+	putative drug transport protein	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711	gene	gene1161	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1170
trd_1171	trd_1171		trd_1171	1162150	1162716	+	OsmC-like protein	identified by match to protein family HMM PF02566	gene	gene1162	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1171
trd_1172	trd_1172		trd_1172	1162774	1163673	+	putative thiosulfate sulfurtransferase precursor	identified by match to protein family HMM PF00581	gene	gene1163	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1172
trd_1173	trd_1173		trd_1173	1163764	1164198	+	NifU family protein	identified by match to protein family HMM PF01592	gene	gene1164	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1173
trd_1174	trd_1174		trd_1174	1164243	1165640	+	selenium-binding protein	identified by match to protein family HMM PF05694	gene	gene1165	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1174
trd_1175	trd_1175		trd_1175	1165719	1166387	+	putative membrane protein		gene	gene1166	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1175
trd_1176	trd_1176		trd_1176	1166391	1167356	-	phosphoesterase PHP%2C N-terminal	identified by match to protein family HMM PF02811	gene	gene1167	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1176
trd_1177	trd_1177		trd_1177	1167432	1168190	+	conserved hypothetical protein TIGR00486	identified by match to protein family HMM PF01784%3B match to protein family HMM TIGR00486	gene	gene1168	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1177
trd_1178	trd_1178	glmM	glmM	1168220	1169575	+	phosphomannomutase	identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880	gene	gene1169	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1178
trd_1179	trd_1179		trd_1179	1169583	1170074	+	Protein of unknown function (DUF402) family	identified by match to protein family HMM PF04167	gene	gene1170	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1179
trd_1180	trd_1180		trd_1180	1170157	1170846	+	transcriptional regulator%2C MerR family protein	identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR01764	gene	gene1171	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1180
trd_1181	trd_1181		trd_1181	1170883	1171098	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1172	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1181
trd_1182	trd_1182		trd_1182	1171104	1172216	-	Alanine racemase%2C N-terminal domain family	identified by match to protein family HMM PF01168	gene	gene1173	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1182
trd_1183	trd_1183	purN	purN	1172229	1172852	-	phosphoribosylglycinamide formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639	gene	gene1174	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1183
trd_1184	trd_1184		trd_1184	1173002	1174585	+	GMP synthase (glutamine-hydrolyzing)	identified by match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888	gene	gene1175	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1184
trd_1185	trd_1185		trd_1185	1175871	1176656	-	nitrate/nitrite response regulator protein	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene1177	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1185
trd_1186	trd_1186	purD	purD	1174589	1175902	+	phosphoribosylamine--glycine ligase	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877	gene	gene1176	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1186
trd_1187	trd_1187		trd_1187	1176755	1177288	-	putative hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293	gene	gene1178	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1187
trd_1188	trd_1188		trd_1188	1177677	1177790	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1179	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1188
trd_1189	trd_1189		trd_1189	1177994	1178070	-	tRNA-Cys		tRNA	gene1180	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1189
trd_1190	trd_1190	ade	ade	1178214	1179923	-	adenine deaminase	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR01178	gene	gene1181	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1190
trd_1191	trd_1191		trd_1191	1179941	1180375	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1182	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1191
trd_1192	trd_1192		trd_1192	1180398	1180823	-	putative MerR-family transcriptional regulator	identified by match to protein family HMM PF00376	gene	gene1183	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1192
trd_1193	trd_1193		trd_1193	1180929	1181735	+	conserved hypothetical protein TIGR00259	identified by match to protein family HMM PF03437%3B match to protein family HMM TIGR00259	gene	gene1184	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1193
trd_1194	trd_1194	recJ	recJ	1181856	1183541	-	single-stranded-DNA-specific exonuclease RecJ	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644	gene	gene1185	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1194
trd_1195	trd_1195		trd_1195	1183641	1184357	-	transcriptional repressor	identified by match to protein family HMM PF01325%3B match to protein family HMM PF02742%3B match to protein family HMM PF04023	gene	gene1186	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1195
trd_1196	trd_1196		trd_1196	1184448	1185407	+	Ser/Thr protein phosphatase family protein	identified by match to protein family HMM PF00149	gene	gene1187	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1196
trd_1197	trd_1197		trd_1197	1186486	1187520	-	isoprenyl synthetase	identified by match to protein family HMM PF00348	gene	gene1189	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1197
trd_1198	trd_1198		trd_1198	1185404	1186489	+	conserved hypothetical protein	identified by match to protein family HMM PF08735	gene	gene1188	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1198
trd_1199	trd_1199		trd_1199	1187684	1188376	+	putative Zn-dependent protease	identified by match to protein family HMM PF04298	gene	gene1190	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1199
trd_1200	trd_1200		trd_1200	1188543	1189007	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1191	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1200
trd_1201	trd_1201	clpX	clpX	1189096	1190367	-	ATP-dependent Clp protease%2C ATP-binding subunit ClpX	identified by match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382	gene	gene1192	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1201
trd_1202	trd_1202	clpP	clpP	1190394	1191011	-	Clp protease	identified by match to protein family HMM PF00574	gene	gene1193	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1202
trd_1203	trd_1203	tig	tig	1191032	1192504	-	trigger factor	identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115	gene	gene1194	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1203
trd_1204	trd_1204		trd_1204	1192754	1193512	+	conserved hypothetical protein		gene	gene1195	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1204
trd_1205	trd_1205		trd_1205	1193872	1194318	+	carbon-monoxide dehydrogenase	identified by match to protein family HMM PF06240	gene	gene1196	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1205
trd_1206	trd_1206		trd_1206	1194362	1194832	+	[2Fe-2S] binding domain protein	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene1197	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1206
trd_1207	trd_1207		trd_1207	1194889	1197240	+	oxidoreductase%2C large chain	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene1198	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1207
trd_1208	trd_1208		trd_1208	1197291	1198157	+	carbon monoxide dehydrogenase medium chain	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene1199	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1208
trd_1209	trd_1209		trd_1209	1198278	1199174	+	putative ATPase%2C AAA family	identified by match to protein family HMM PF00004%3B match to protein family HMM PF07726%3B match to protein family HMM PF07728	gene	gene1200	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1209
trd_1210	trd_1210		trd_1210	1199219	1200472	+	VWA domain containing CoxE-like protein	identified by match to protein family HMM PF05762	gene	gene1201	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1210
trd_1211	trd_1211		trd_1211	1200488	1200808	+	putative xanthine dehydrogenase accessory factor subfamily%2C putative	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02625	gene	gene1202	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1211
trd_1212	trd_1212		trd_1212	1200805	1201593	+	putative xanthine dehydrogenase accessory factor subfamily%2C putative	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02625	gene	gene1203	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1212
trd_1213	trd_1213		trd_1213	1201615	1202223	+	conserved hypothetical protein		gene	gene1204	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1213
trd_1214	trd_1214		trd_1214	1202220	1202729	+	putative nudix/mutt family protein	identified by match to protein family HMM PF00293	gene	gene1205	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1214
trd_1215	trd_1215		trd_1215	1202702	1205131	+	carbon-monoxide dehydrogenase%2C large subunit	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene1206	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1215
trd_1216	trd_1216		trd_1216	1205282	1205473	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1207	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1216
trd_1217	trd_1217		trd_1217	1205498	1206217	-	heme exporter protein C	identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR01191	gene	gene1208	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1217
trd_1218	trd_1218		trd_1218	1206252	1206920	-	heme exporter protein B	identified by match to protein family HMM PF01061	gene	gene1209	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1218
trd_1219	trd_1219	ccmA	ccmA	1206917	1207663	-	heme ABC exporter%2C ATP-binding protein CcmA	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01189	gene	gene1210	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1219
trd_1220	trd_1220		trd_1220	1207660	1208040	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1211	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1220
trd_1221	trd_1221		trd_1221	1208040	1208525	-	CcmH%2C cytochrome c-type biogenesis protein CcmH	identified by match to protein family HMM PF03918	gene	gene1212	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1221
trd_1222	trd_1222		trd_1222	1208569	1210554	-	cytochrome C-type biogenesis protein	identified by match to protein family HMM PF01578	gene	gene1213	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1222
trd_1223	trd_1223		trd_1223	1210571	1211017	-	cytochrome c-type biogenesis protein CycJ		gene	gene1214	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1223
trd_1224	trd_1224		trd_1224	1211050	1211529	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1215	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1224
trd_1225	trd_1225		trd_1225	1211542	1212150	-	c-type cytochrome biogenesis protein/thioredoxin dsbE	identified by match to protein family HMM PF00085%3B match to protein family HMM PF00578%3B match to protein family HMM PF08534	gene	gene1216	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1225
trd_1226	trd_1226	murA	murA	1212182	1213456	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072	gene	gene1217	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1226
trd_1227	trd_1227	atpC	atpC	1213468	1213923	-	ATP synthase F1%2C epsilon subunit	identified by match to protein family HMM PF02823%3B match to protein family HMM TIGR01216	gene	gene1218	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1227
trd_1228	trd_1228	atpD	atpD	1213937	1215358	-	ATP synthase F1%2C beta subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039	gene	gene1219	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1228
trd_1229	trd_1229	atpG	atpG	1215381	1216271	-	ATP synthase F1%2C gamma subunit	identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146	gene	gene1220	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1229
trd_1230	trd_1230	atpA	atpA	1216294	1217826	-	ATP synthase F1%2C alpha subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962	gene	gene1221	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1230
trd_1231	trd_1231	atpH	atpH	1217845	1218387	-	ATP synthase F1%2C delta subunit	identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145	gene	gene1222	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1231
trd_1232	trd_1232	atpF	atpF	1218399	1218896	-	ATP synthase F0%2C B subunit	identified by match to protein family HMM PF00430%3B match to protein family HMM TIGR01144	gene	gene1223	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1232
trd_1233	trd_1233	atpE	atpE	1219017	1219262	-	ATP synthase F0%2C C subunit	identified by match to protein family HMM PF00137%3B match to protein family HMM TIGR01260	gene	gene1224	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1233
trd_1234	trd_1234	atpB	atpB	1219327	1220217	-	ATP synthase F0%2C A subunit	identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131	gene	gene1225	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1234
trd_1235	trd_1235		trd_1235	1220221	1220466	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1226	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1235
trd_1236	trd_1236	pyrG	pyrG	1220511	1222166	-	CTP synthase	identified by match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337	gene	gene1227	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1236
trd_1237	trd_1237		trd_1237	1222198	1223004	-	conserved hypothetical protein		gene	gene1228	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1237
trd_1238	trd_1238		trd_1238	1223124	1223792	-	regulatory protein recX	identified by match to protein family HMM PF02631	gene	gene1229	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1238
trd_1239	trd_1239		trd_1239	1223852	1224484	+	Uncharacterized ACR	identified by match to protein family HMM PF02698	gene	gene1230	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1239
trd_1240	trd_1240	leuS	leuS	1224492	1226981	-	leucyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00396	gene	gene1231	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1240
trd_1241	trd_1241		trd_1241	1227185	1227298	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1232	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1241
trd_1242	trd_1242		trd_1242	1227301	1227375	-	tRNA-Ala		tRNA	gene1233	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1242
trd_1243	trd_1243		trd_1243	1227692	1229104	+	MiaB-like tRNA modifying enzyme YliG%2C TIGR01125	identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01125	gene	gene1234	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1243
trd_1244	trd_1244		trd_1244	1229919	1230569	-	CDP-alcohol phosphatidyltransferase family	identified by match to protein family HMM PF01066	gene	gene1235	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1244
trd_1245	trd_1245		trd_1245	1230593	1231591	-	Protein of unknown function (DUF1648) family	identified by match to protein family HMM PF07853	gene	gene1236	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1245
trd_1246	trd_1246		trd_1246	1231652	1233046	-	putative post-translocation molecular chaperone	identified by match to protein family HMM PF00639	gene	gene1237	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1246
trd_1247	trd_1247		trd_1247	1233108	1233428	-	30S ribosomal protein S18	identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165	gene	gene1238	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1247
trd_1248	trd_1248		trd_1248	1233453	1233908	-	single-stranded DNA binding protein	identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621	gene	gene1239	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1248
trd_1249	trd_1249	rpsF	rpsF	1233944	1234261	-	ribosomal protein S6	identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166	gene	gene1240	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1249
trd_1250	trd_1250		trd_1250	1234456	1234743	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1241	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1250
trd_1251	trd_1251	thrB	thrB	1234976	1235923	-	homoserine kinase	identified by match to protein family HMM PF00288%3B match to protein family HMM PF08544%3B match to protein family HMM TIGR00191	gene	gene1242	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1251
trd_1252	trd_1252	thrC	thrC	1235913	1237187	-	threonine synthase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260	gene	gene1243	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1252
trd_1253	trd_1253		trd_1253	1237235	1238197	-	oligopeptide transport system permease protein appC	identified by match to protein family HMM PF00528	gene	gene1244	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1253
trd_1254	trd_1254		trd_1254	1238223	1239182	-	oligopeptide transport system permease protein appB	identified by match to protein family HMM PF00528	gene	gene1245	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1254
trd_1255	trd_1255		trd_1255	1239251	1241188	-	peptide/opine/nickel uptake family ABC transporter%2C periplasmic substrate-binding protein	identified by match to protein family HMM PF00496%3B match to protein family HMM TIGR01409	gene	gene1246	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1255
trd_1256	trd_1256		trd_1256	1241285	1241536	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1247	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1256
trd_1257	trd_1257		trd_1257	1241734	1242849	-	conserved hypothetical protein		gene	gene1248	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1257
trd_1258	trd_1258		trd_1258	1242867	1244357	-	glycogen synthase	identified by match to protein family HMM PF00534%3B match to protein family HMM PF08323%3B match to protein family HMM TIGR02095	gene	gene1249	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1258
trd_1259	trd_1259	glgC	glgC	1244377	1245663	-	glucose-1-phosphate adenylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02091	gene	gene1250	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1259
trd_1260	trd_1260	accD	accD	1245740	1246642	+	acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit	identified by match to protein family HMM TIGR00515	gene	gene1251	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1260
trd_1261	trd_1261	accA	accA	1246639	1247460	+	acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit	identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513	gene	gene1252	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1261
trd_1262	trd_1262		trd_1262	1247505	1247936	-	probable HspC2 heat shock protein	identified by match to protein family HMM PF00011	gene	gene1253	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1262
trd_1263	trd_1263		trd_1263	1247963	1249147	-	peptidase%2C M50 family protein	identified by match to protein family HMM PF00571%3B match to protein family HMM PF02163	gene	gene1254	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1263
trd_1264	trd_1264	pyrB	pyrB	1249452	1250408	+	aspartate carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670	gene	gene1255	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1264
trd_1265	trd_1265		trd_1265	1250477	1251499	-	RNA polymerase sigma factor rpoD	identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937	gene	gene1256	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1265
trd_1266	trd_1266		trd_1266	1251732	1254284	+	RecF/RecN/SMC N terminal domain protein	identified by match to protein family HMM PF02463	gene	gene1257	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1266
trd_1267	trd_1267		trd_1267	1254385	1255794	+	putative protease/transporter	identified by match to protein family HMM PF01957	gene	gene1258	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1267
trd_1268	trd_1268		trd_1268	1255823	1256620	+	mechanosensory protein 2	identified by match to protein family HMM PF01145	gene	gene1259	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1268
trd_1269	trd_1269		trd_1269	1256623	1257588	-	protease IV%2C signal peptide peptidase	identified by match to protein family HMM PF01343%3B match to protein family HMM TIGR00706	gene	gene1260	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1269
trd_1270	trd_1270		trd_1270	1257622	1258479	-	hypothetical conserved protein	identified by match to protein family HMM PF03618	gene	gene1261	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1270
trd_1271	trd_1271		trd_1271	1258451	1260997	+	predicted coding region		gene	gene1262	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1271
trd_1272	trd_1272		trd_1272	1260994	1262826	+	putative membrane protein		gene	gene1263	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1272
trd_1273	trd_1273		trd_1273	1262834	1263508	+	two-component response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1264	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1273
trd_1274	trd_1274		trd_1274	1263600	1265033	+	two-component sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1265	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1274
trd_1275	trd_1275		trd_1275	1265047	1265745	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1266	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1275
trd_1276	trd_1276	dxs	dxs	1265922	1267811	+	1-deoxy-D-xylulose-5-phosphate synthase	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204	gene	gene1267	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1276
trd_1277	trd_1277	gidB	gidB	1267808	1268572	+	methyltransferase GidB	identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138	gene	gene1268	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1277
trd_1278	trd_1278		trd_1278	1268577	1269935	+	putative pyridine nucleotide-disulphide oxidoreductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992	gene	gene1269	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1278
trd_1279	trd_1279		trd_1279	1270296	1271306	+	dipeptide transport system permease protein dppB	identified by match to protein family HMM PF00528	gene	gene1270	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1279
trd_1280	trd_1280		trd_1280	1271308	1272216	+	inner membrane ABC transporter permease protein yddQ	identified by match to protein family HMM PF00528	gene	gene1271	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1280
trd_1281	trd_1281		trd_1281	1272237	1273973	+	putative oligopeptide ABC transporter substrate-binding protein	identified by match to protein family HMM PF00496	gene	gene1272	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1281
trd_1282	trd_1282		trd_1282	1274052	1274921	+	putative arginine deiminase	identified by match to protein family HMM PF02274	gene	gene1273	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1282
trd_1283	trd_1283		trd_1283	1275945	1277141	-	putative hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01460	gene	gene1275	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1283
trd_1284	trd_1284		trd_1284	1274944	1275987	+	putative hydroxyindole O-methyltransferase	identified by match to protein family HMM PF00891%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1274	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1284
trd_1285	trd_1285		trd_1285	1277407	1278408	+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	identified by match to protein family HMM PF00535	gene	gene1276	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1285
trd_1286	trd_1286		trd_1286	1278401	1279330	+	conserved hypothetical protein	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1277	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1286
trd_1287	trd_1287		trd_1287	1279467	1279539	+	tRNA-Arg		tRNA	gene1278	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1287
trd_1288	trd_1288		trd_1288	1279606	1280826	+	CinA-like protein	identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00200	gene	gene1279	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1288
trd_1289	trd_1289		trd_1289	1281720	1282217	-	putative conserved hypothetical protein TIGR00043	identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043	gene	gene1280	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1289
trd_1290	trd_1290		trd_1290	1282214	1284379	-	7TM-HD extracellular domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM PF07697%3B match to protein family HMM TIGR00277	gene	gene1281	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1290
trd_1291	trd_1291		trd_1291	1284420	1284998	-	GatB/Yqey domain superfamily	identified by match to protein family HMM PF02637	gene	gene1282	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1291
trd_1292	trd_1292		trd_1292	1284993	1285109	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1283	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1292
trd_1293	trd_1293		trd_1293	1285116	1285189	+	tRNA-Glu		tRNA	gene1284	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1293
trd_1294	trd_1294		trd_1294	1285226	1285783	-	putative lipoprotein		gene	gene1285	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1294
trd_1295	trd_1295		trd_1295	1285796	1286653	-	conserved hypothetical protein	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1286	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1295
trd_1296	trd_1296		trd_1296	1286628	1287926	-	putative lipoprotein		gene	gene1287	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1296
trd_1297	trd_1297		trd_1297	1287923	1289239	-	putative membrane protein		gene	gene1288	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1297
trd_1298	trd_1298		trd_1298	1289236	1290159	-	putative membrane protein		gene	gene1289	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1298
trd_1299	trd_1299		trd_1299	1290156	1291328	-	glycosyltransferase	identified by match to protein family HMM PF00534	gene	gene1290	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1299
trd_1300	trd_1300	groL	groL	1291492	1293138	-	chaperonin GroEL	identified by match to protein family HMM PF00118%3B match to protein family HMM TIGR02348	gene	gene1291	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1300
trd_1301	trd_1301	groS	groS	1293169	1293474	-	chaperonin%2C 10 kDa	identified by match to protein family HMM PF00166	gene	gene1292	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1301
trd_1302	trd_1302		trd_1302	1294854	1295678	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1294	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1302
trd_1303	trd_1303		trd_1303	1293685	1294857	+	aspartate aminotransferase A	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00266	gene	gene1293	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1303
trd_1304	trd_1304		trd_1304	1295675	1295863	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1295	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1304
trd_1305	trd_1305	selD	selD	1295922	1296899	+	selenide%2C water dikinase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00476	gene	gene1296	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1305
trd_1306	trd_1306	ksgA	ksgA	1296856	1297749	+	dimethyladenosine transferase	identified by match to protein family HMM PF00398%3B match to protein family HMM TIGR00755	gene	gene1297	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1306
trd_1307	trd_1307	ispE	ispE	1297746	1298630	+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00154	gene	gene1298	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1307
trd_1308	trd_1308		trd_1308	1298643	1299110	-	thioesterase family protein	identified by match to protein family HMM PF03061	gene	gene1299	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1308
trd_1309	trd_1309		trd_1309	1299234	1300430	+	molybdopterin biosynthesis protein	identified by match to protein family HMM PF00581%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237	gene	gene1300	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1309
trd_1310	trd_1310		trd_1310	1300518	1301000	-	Mov34/MPN/PAD-1 family	identified by match to protein family HMM PF01398	gene	gene1301	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1310
trd_1311	trd_1311		trd_1311	1300997	1301275	-	molybdopterin converting factor%2C subunit 1	identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01687	gene	gene1302	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1311
trd_1312	trd_1312		trd_1312	1301313	1302356	-	cysteine synthase B	identified by match to protein family HMM PF00291	gene	gene1303	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1312
trd_1313	trd_1313		trd_1313	1302445	1304259	+	Stk1	identified by match to protein family HMM PF00069%3B match to protein family HMM PF03793%3B match to protein family HMM PF07714	gene	gene1304	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1313
trd_1314	trd_1314		trd_1314	1304256	1305083	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1305	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1314
trd_1315	trd_1315		trd_1315	1305776	1306939	+	cytochrome C and Quinol oxidase polypeptide I superfamily	identified by match to protein family HMM PF00115	gene	gene1306	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1315
trd_1316	trd_1316		trd_1316	1306996	1308609	-	Amino acid permease superfamily	identified by match to protein family HMM PF00324	gene	gene1307	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1316
trd_1317	trd_1317		trd_1317	1308631	1310292	-	Amino acid permease superfamily	identified by match to protein family HMM PF00324	gene	gene1308	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1317
trd_1318	trd_1318		trd_1318	1310307	1310951	-	Putative cyclase superfamily	identified by match to protein family HMM PF04199	gene	gene1309	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1318
trd_1319	trd_1319		trd_1319	1310948	1311928	-	Ser/Thr protein phosphatase family protein	identified by match to protein family HMM PF00149	gene	gene1310	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1319
trd_1320	trd_1320		trd_1320	1311957	1312844	-	conserved hypothetical protein		gene	gene1311	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1320
trd_1321	trd_1321		trd_1321	1313680	1314171	-	putative MOSC domain	identified by match to protein family HMM PF03473	gene	gene1313	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1321
trd_1322	trd_1322		trd_1322	1313159	1313683	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1312	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1322
trd_1323	trd_1323		trd_1323	1314168	1315652	-	putative gluconokinase	identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782	gene	gene1314	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1323
trd_1324	trd_1324	folK	folK	1315652	1316155	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	identified by match to protein family HMM PF01288%3B match to protein family HMM TIGR01498	gene	gene1315	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1324
trd_1325	trd_1325	folP	folP	1316152	1317000	-	dihydropteroate synthase	identified by match to protein family HMM PF00809%3B match to protein family HMM TIGR01496	gene	gene1316	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1325
trd_1326	trd_1326	folB	folB	1317023	1317394	-	dihydroneopterin aldolase	identified by match to protein family HMM PF02152%3B match to protein family HMM TIGR00525%3B match to protein family HMM TIGR00526	gene	gene1317	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1326
trd_1327	trd_1327		trd_1327	1317395	1318696	-	putative membrane protein		gene	gene1318	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1327
trd_1328	trd_1328		trd_1328	1318783	1318929	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1319	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1328
trd_1329	trd_1329		trd_1329	1320540	1321520	-	putative site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899	gene	gene1321	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1329
trd_1330	trd_1330		trd_1330	1318933	1320543	+	conserved hypothetical protein		gene	gene1320	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1330
trd_1331	trd_1331	ggt	ggt	1322012	1323712	+	gamma-glutamyltransferase	identified by match to protein family HMM PF01019%3B match to protein family HMM TIGR00066	gene	gene1322	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1331
trd_1332	trd_1332		trd_1332	1323803	1324648	+	hypothetical membrane protein%2C conserved%2C family	identified by match to protein family HMM PF01925	gene	gene1323	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1332
trd_1333	trd_1333		trd_1333	1324650	1325084	+	conserved hypothetical protein	identified by match to protein family HMM PF07843	gene	gene1324	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1333
trd_1334	trd_1334		trd_1334	1325081	1325581	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1325	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1334
trd_1335	trd_1335		trd_1335	1325583	1326425	+	putative Domain of unknown function	identified by match to protein family HMM PF01925	gene	gene1326	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1335
trd_1336	trd_1336		trd_1336	1327230	1328843	-	cell envelope-related transcriptional attenuator	identified by match to protein family HMM PF03816%3B match to protein family HMM TIGR00350	gene	gene1328	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1336
trd_1337	trd_1337		trd_1337	1326516	1327238	+	Copper binding proteins%2C plastocyanin/azurin family	identified by match to protein family HMM PF00127	gene	gene1327	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1337
trd_1338	trd_1338		trd_1338	1329014	1329835	+	putative cytochrome c heme-binding subunit		gene	gene1329	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1338
trd_1339	trd_1339		trd_1339	1330354	1331463	-	threonine synthase	identified by match to protein family HMM PF00291	gene	gene1330	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1339
trd_1340	trd_1340		trd_1340	1331617	1332843	-	acyl-CoA dehydrogenase	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene1331	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1340
trd_1341	trd_1341		trd_1341	1332985	1333515	+	Appr-1-p processing enzyme family protein	identified by match to protein family HMM PF01661	gene	gene1332	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1341
trd_1342	trd_1342		trd_1342	1333609	1334670	+	tartrate dehydrogenase	identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR02089	gene	gene1333	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1342
trd_1343	trd_1343		trd_1343	1334681	1335880	+	mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muconate lactonizing enzyme	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene1334	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1343
trd_1344	trd_1344		trd_1344	1335932	1336840	+	DedA family	identified by match to protein family HMM PF09335	gene	gene1335	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1344
trd_1345	trd_1345		trd_1345	1336934	1337869	-	putative dehydrogenase	identified by match to protein family HMM PF00296%3B match to protein family HMM TIGR03560	gene	gene1336	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1345
trd_1346	trd_1346		trd_1346	1338355	1339551	+	putative membrane efflux protein	identified by match to protein family HMM PF07690	gene	gene1337	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1346
trd_1347	trd_1347		trd_1347	1339608	1340513	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1338	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1347
trd_1348	trd_1348		trd_1348	1340997	1341350	-	degradation protein	identified by match to protein family HMM PF07883	gene	gene1339	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1348
trd_1349	trd_1349	metE	metE	1341376	1343667	-	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	identified by match to protein family HMM PF01717%3B match to protein family HMM PF08267%3B match to protein family HMM TIGR01371	gene	gene1340	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1349
trd_1350	trd_1350		trd_1350	1343693	1343887	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1341	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1350
trd_1351	trd_1351		trd_1351	1343874	1344359	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1342	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1351
trd_1352	trd_1352		trd_1352	1344441	1345628	-	Uncharacterized ACR (DUF711) superfamily	identified by match to protein family HMM PF05167	gene	gene1343	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1352
trd_1353	trd_1353		trd_1353	1345739	1346548	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene1344	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1353
trd_1354	trd_1354		trd_1354	1346550	1347275	+	conserved hypothetical protein	identified by match to protein family HMM PF02585	gene	gene1345	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1354
trd_1355	trd_1355		trd_1355	1347301	1348338	-	putative oxidoreductase		gene	gene1346	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1355
trd_1356	trd_1356		trd_1356	1348441	1348560	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1347	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1356
trd_1357	trd_1357		trd_1357	1348557	1348847	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1348	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1357
trd_1358	trd_1358		trd_1358	1349613	1350209	-	putative frnE protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF01323	gene	gene1349	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1358
trd_1359	trd_1359		trd_1359	1350263	1350652	-	DoxX subfamily	identified by match to protein family HMM PF07681	gene	gene1350	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1359
trd_1360	trd_1360		trd_1360	1350731	1351294	-	YceI like family	identified by match to protein family HMM PF04264	gene	gene1351	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1360
trd_1361	trd_1361		trd_1361	1351411	1351527	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1352	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1361
trd_1362	trd_1362		trd_1362	1351504	1351881	+	hypothetical conserved protein	identified by match to protein family HMM PF01022%3B match to protein family HMM PF01638	gene	gene1353	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1362
trd_1363	trd_1363		trd_1363	1351900	1352832	+	periplasmic binding protein		gene	gene1354	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1363
trd_1364	trd_1364		trd_1364	1353638	1354879	-	protein C7orf10	identified by match to protein family HMM PF02515	gene	gene1356	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1364
trd_1365	trd_1365		trd_1365	1352847	1353641	+	putative integral membrane protein		gene	gene1355	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1365
trd_1366	trd_1366		trd_1366	1354928	1355668	-	transcriptional regulatory protein degU	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene1357	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1366
trd_1367	trd_1367		trd_1367	1355724	1357919	-	GAF domain protein	identified by match to protein family HMM PF01590	gene	gene1359	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1367
trd_1368	trd_1368		trd_1368	1355561	1355740	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1358	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1368
trd_1369	trd_1369		trd_1369	1358077	1358841	+	conserved protein	identified by match to protein family HMM PF00753	gene	gene1360	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1369
trd_1370	trd_1370		trd_1370	1358849	1360345	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1361	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1370
trd_1371	trd_1371		trd_1371	1360440	1361813	+	ErfK/YbiS/YcfS/YnhG family	identified by match to protein family HMM PF03734	gene	gene1362	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1371
trd_1372	trd_1372		trd_1372	1362015	1363418	+	deoxyribodipyrimidine photo-lyase	identified by match to protein family HMM PF00875%3B match to protein family HMM PF03441	gene	gene1363	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1372
trd_1373	trd_1373		trd_1373	1364975	1367152	-	penicillin-binding protein 2	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM PF05223%3B match to protein family HMM TIGR03423	gene	gene1365	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1373
trd_1374	trd_1374		trd_1374	1363431	1364984	+	probable phytoene dehydrogenase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01593	gene	gene1364	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1374
trd_1375	trd_1375		trd_1375	1367256	1368230	-	ribose-phosphate pyrophosphokinase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251	gene	gene1366	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1375
trd_1376	trd_1376	rnc	rnc	1368235	1368993	-	ribonuclease III	identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191	gene	gene1367	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1376
trd_1377	trd_1377		trd_1377	1368997	1369431	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1368	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1377
trd_1378	trd_1378		trd_1378	1369525	1369884	-	Uncharacterized ACR	identified by match to protein family HMM PF02641	gene	gene1369	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1378
trd_1379	trd_1379	crcB	crcB	1369895	1370272	-	crcB protein	identified by match to protein family HMM PF02537%3B match to protein family HMM TIGR00494	gene	gene1370	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1379
trd_1380	trd_1380		trd_1380	1370406	1370609	-	conserved domain protein	identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411	gene	gene1371	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1380
trd_1381	trd_1381	hemG	hemG	1371700	1373094	-	protoporphyrinogen oxidase	identified by match to protein family HMM PF01593%3B match to protein family HMM TIGR00562	gene	gene1373	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1381
trd_1382	trd_1382		trd_1382	1370924	1371703	+	exopolysaccharide biosynthesis protein	identified by match to protein family HMM PF02811	gene	gene1372	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1382
trd_1383	trd_1383	hemH	hemH	1373112	1374068	-	ferrochelatase	identified by match to protein family HMM PF00762%3B match to protein family HMM TIGR00109	gene	gene1374	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1383
trd_1384	trd_1384	hemE	hemE	1374090	1375220	-	uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208%3B match to protein family HMM TIGR01464	gene	gene1375	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1384
trd_1385	trd_1385		trd_1385	1375352	1377199	+	putative methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene1376	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1385
trd_1386	trd_1386		trd_1386	1377281	1378225	+	putative lipoprotein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1377	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1386
trd_1387	trd_1387		trd_1387	1378234	1379034	-	2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase	identified by match to protein family HMM PF01689	gene	gene1378	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1387
trd_1388	trd_1388		trd_1388	1379036	1379764	-	4-oxalocrotonate decarboxylase	identified by match to protein family HMM PF01689	gene	gene1379	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1388
trd_1389	trd_1389		trd_1389	1379781	1379996	-	putative tautomerase	identified by match to protein family HMM PF01361	gene	gene1380	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1389
trd_1390	trd_1390		trd_1390	1380010	1380855	-	putative hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene1381	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1390
trd_1391	trd_1391		trd_1391	1380885	1381379	-	StyB protein	identified by match to protein family HMM PF01613	gene	gene1382	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1391
trd_1392	trd_1392		trd_1392	1381393	1382463	-	4-hydroxy-2-oxovalerate aldolase	identified by match to protein family HMM PF00682%3B match to protein family HMM PF07836%3B match to protein family HMM TIGR03217	gene	gene1383	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1392
trd_1393	trd_1393		trd_1393	1382460	1383554	-	acetaldehyde dehydrogenase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF09290%3B match to protein family HMM TIGR03215	gene	gene1384	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1393
trd_1394	trd_1394		trd_1394	1383323	1384144	-	putative transcriptional regulator	identified by match to protein family HMM PF01614%3B match to protein family HMM PF09339	gene	gene1385	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1394
trd_1395	trd_1395		trd_1395	1384359	1385894	+	4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component	identified by match to protein family HMM PF03241	gene	gene1386	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1395
trd_1396	trd_1396		trd_1396	1385929	1386909	+	catechol 2%2C3-dioxygenase	identified by match to protein family HMM PF00903	gene	gene1387	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1396
trd_1397	trd_1397		trd_1397	1386940	1388376	+	putative ABC transporter substrate binding protein	identified by match to protein family HMM PF01094	gene	gene1388	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1397
trd_1398	trd_1398		trd_1398	1388526	1389389	+	ABC-transporter	identified by match to protein family HMM PF02653	gene	gene1389	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1398
trd_1399	trd_1399		trd_1399	1389402	1390454	+	branched-chain amino acid ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene1390	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1399
trd_1400	trd_1400		trd_1400	1390457	1391233	+	putative branched amino acid related transport system%2C bifunctional protein	identified by match to protein family HMM PF00005	gene	gene1391	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1400
trd_1401	trd_1401		trd_1401	1391217	1391933	+	branched-chain amino acid ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1392	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1401
trd_1402	trd_1402		trd_1402	1392113	1393051	+	Amidohydrolase family	identified by match to protein family HMM PF04909	gene	gene1393	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1402
trd_1403	trd_1403		trd_1403	1393330	1394667	+	putative branched-chain amino acid binding protein	identified by match to protein family HMM PF01094	gene	gene1394	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1403
trd_1404	trd_1404		trd_1404	1395029	1395907	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene1395	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1404
trd_1405	trd_1405		trd_1405	1395904	1397676	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF02653	gene	gene1396	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1405
trd_1406	trd_1406		trd_1406	1397669	1398388	+	high-affinity branched-chain amino acid transport ATP-binding proteinlivF	identified by match to protein family HMM PF00005	gene	gene1397	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1406
trd_1407	trd_1407		trd_1407	1398668	1400011	+	Receptor family ligand binding region	identified by match to protein family HMM PF01094	gene	gene1398	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1407
trd_1408	trd_1408		trd_1408	1400086	1401072	-	ribonucleoside-diphosphate reductase%2C beta subunit	identified by match to protein family HMM PF00268	gene	gene1399	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1408
trd_1409	trd_1409		trd_1409	1401092	1403404	-	ribonucleoside-diphosphate reductase%2C alpha subunit	identified by match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM TIGR02506	gene	gene1400	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1409
trd_1410	trd_1410		trd_1410	1403825	1403980	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1401	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1410
trd_1411	trd_1411		trd_1411	1404276	1405583	+	glycosyltransferase%2C MGT family	identified by match to protein family HMM TIGR01426	gene	gene1402	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1411
trd_1412	trd_1412		trd_1412	1405602	1406753	+	conserved hypothetical protein		gene	gene1403	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1412
trd_1413	trd_1413		trd_1413	1406750	1408519	+	conserved hypothetical protein		gene	gene1404	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1413
trd_1414	trd_1414		trd_1414	1408571	1411099	-	cation-transporting ATPase pacS	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR00003%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525	gene	gene1405	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1414
trd_1415	trd_1415		trd_1415	1411118	1411429	-	Uncharacterized BCR	identified by match to protein family HMM PF02583	gene	gene1406	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1415
trd_1416	trd_1416		trd_1416	1411511	1411642	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1407	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1416
trd_1417	trd_1417		trd_1417	1411668	1412642	-	putative poly-gamma-glutamate biosynthesis enzyme		gene	gene1408	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1417
trd_1418	trd_1418		trd_1418	1412658	1413989	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF01436	gene	gene1409	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1418
trd_1419	trd_1419		trd_1419	1414017	1414166	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1410	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1419
trd_1420	trd_1420		trd_1420	1414507	1415595	+	EAL domain protein	identified by match to protein family HMM PF00563	gene	gene1411	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1420
trd_1421	trd_1421		trd_1421	1415800	1417218	+	glutamate-1-semialdehyde 2%2C1-aminomutase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202	gene	gene1412	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1421
trd_1422	trd_1422		trd_1422	1417300	1417551	-	conserved domain protein	identified by match to protein family HMM PF00037	gene	gene1413	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1422
trd_1423	trd_1423		trd_1423	1417696	1417905	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1414	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1423
trd_1424	trd_1424		trd_1424	1418020	1418340	-	conserved domain protein	identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105	gene	gene1415	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1424
trd_1425	trd_1425	rpmA	rpmA	1418337	1418636	-	ribosomal protein L27	identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062	gene	gene1416	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1425
trd_1426	trd_1426	rplU	rplU	1418661	1418984	-	ribosomal protein L21	identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061	gene	gene1417	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1426
trd_1427	trd_1427		trd_1427	1419425	1420951	-	putative membrane protein		gene	gene1418	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1427
trd_1428	trd_1428		trd_1428	1420948	1421514	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1419	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1428
trd_1429	trd_1429	argF	argF	1421482	1422447	+	ornithine carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658	gene	gene1420	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1429
trd_1430	trd_1430		trd_1430	1422514	1422861	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1421	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1430
trd_1431	trd_1431		trd_1431	1423162	1423249	-	tRNA-Tyr		tRNA	gene1422	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1431
trd_1433	trd_1433		trd_1433	1423729	1424955	+	putative transporter	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene1423	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1433
trd_1434	trd_1434		trd_1434	1425041	1425517	-	small heat shock protein	identified by match to protein family HMM PF00011%3B match to protein family HMM PF04969	gene	gene1424	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1434
trd_1435	trd_1435		trd_1435	1425678	1426955	+	rod shape-determining protein RodA	identified by match to protein family HMM PF01098	gene	gene1425	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1435
trd_1436	trd_1436		trd_1436	1427070	1428284	+	putative oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539	gene	gene1426	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1436
trd_1437	trd_1437		trd_1437	1428318	1429145	+	sporulation initiation inhibitor protein soj	identified by match to protein family HMM PF01656	gene	gene1427	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1437
trd_1438	trd_1438	guaB	guaB	1429152	1430687	+	inosine-5'-monophosphate dehydrogenase	identified by match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM PF01212%3B match to protein family HMM PF03060%3B match to protein family HMM TIGR01302	gene	gene1428	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1438
trd_1439	trd_1439		trd_1439	1430761	1432548	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1429	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1439
trd_1440	trd_1440		trd_1440	1432731	1432916	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1430	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1440
trd_1441	trd_1441		trd_1441	1432980	1433171	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1431	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1441
trd_1442	trd_1442		trd_1442	1433168	1434046	+	Luciferase-like monooxygenase superfamily	identified by match to protein family HMM PF00296%3B match to protein family HMM TIGR03560	gene	gene1432	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1442
trd_1443	trd_1443		trd_1443	1434079	1434681	+	conserved hypothetical protein		gene	gene1433	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1443
trd_1444	trd_1444		trd_1444	1434706	1435206	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1434	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1444
trd_1445	trd_1445		trd_1445	1435455	1436129	-	Putative cyclase superfamily	identified by match to protein family HMM PF04199	gene	gene1436	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1445
trd_1446	trd_1446		trd_1446	1435211	1435474	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1435	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1446
trd_1447	trd_1447		trd_1447	1436109	1436366	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1437	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1447
trd_1448	trd_1448		trd_1448	1436363	1437619	+	putative integral membrane protein	identified by match to protein family HMM PF07690	gene	gene1438	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1448
trd_1449	trd_1449		trd_1449	1437616	1438074	+	cation transport ATPases	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00690	gene	gene1439	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1449
trd_1450	trd_1450		trd_1450	1440105	1441520	-	putative FAD dependent oxidoreductase	identified by match to protein family HMM PF01266	gene	gene1441	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1450
trd_1451	trd_1451		trd_1451	1438162	1440138	+	magnesium transporting ATPase%2C P-type 1	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene1440	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1451
trd_1452	trd_1452		trd_1452	1441473	1441910	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1442	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1452
trd_1453	trd_1453	dnaJ	dnaJ	1442361	1443497	+	chaperone protein DnaJ	identified by match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349	gene	gene1443	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1453
trd_1454	trd_1454		trd_1454	1443667	1443828	-	conserved hypothetical protein		gene	gene1444	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1454
trd_1455	trd_1455		trd_1455	1443873	1444088	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1445	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1455
trd_1456	trd_1456		trd_1456	1444362	1445426	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1446	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1456
trd_1457	trd_1457		trd_1457	1445485	1445625	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1447	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1457
trd_1458	trd_1458		trd_1458	1445751	1447028	-	probable 4-aminobutyrate aminotransferase	identified by match to protein family HMM PF00202	gene	gene1448	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1458
trd_1459	trd_1459		trd_1459	1447073	1448209	-	putative carboxypeptidase G2	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene1449	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1459
trd_1460	trd_1460		trd_1460	1448190	1448786	-	Protein of unknown function superfamily	identified by match to protein family HMM PF01936	gene	gene1450	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1460
trd_1461	trd_1461	dapB	dapB	1448829	1449833	-	Dihydrodipicolinate reductase%2C N-terminus domain protein	identified by match to protein family HMM PF01113	gene	gene1451	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1461
trd_1462	trd_1462		trd_1462	1449863	1450216	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1452	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1462
trd_1463	trd_1463		trd_1463	1450562	1451572	+	putative hydrolase	identified by match to protein family HMM PF03747	gene	gene1453	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1463
trd_1464	trd_1464		trd_1464	1451577	1452236	+	hydrolase%2C CbbY/CbbZ/GpH/YieH family	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene1454	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1464
trd_1465	trd_1465		trd_1465	1452421	1453191	-	putative membrane protein		gene	gene1455	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1465
trd_1466	trd_1466		trd_1466	1453318	1453962	-	conserved hypothetical protein		gene	gene1456	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1466
trd_1467	trd_1467		trd_1467	1454208	1454441	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1457	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1467
trd_1468	trd_1468		trd_1468	1454761	1456197	-	aldehyde dehydrogenase (nadp) family protein	identified by match to protein family HMM PF00171%3B match to protein family HMM PF05893	gene	gene1458	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1468
trd_1469	trd_1469		trd_1469	1456312	1457727	-	aspartate ammonia-lyase	identified by match to protein family HMM PF00206	gene	gene1459	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1469
trd_1470	trd_1470		trd_1470	1457747	1458409	-	nadh-quinone oxidoreductase chain i	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01971	gene	gene1460	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1470
trd_1471	trd_1471		trd_1471	1458228	1460663	-	formate dehydrogenase%2C alpha subunit homolog	identified by match to protein family HMM PF00037%3B match to protein family HMM PF00111%3B match to protein family HMM PF00384%3B match to protein family HMM PF04879	gene	gene1461	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1471
trd_1472	trd_1472		trd_1472	1460734	1460859	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1462	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1472
trd_1473	trd_1473		trd_1473	1460829	1461017	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1463	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1473
trd_1474	trd_1474		trd_1474	1460969	1462420	+	glutaminyl-tRNA synthase%2C glutamine-hydrolyzing%2C subunit B	identified by match to protein family HMM PF01162%3B match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133	gene	gene1464	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1474
trd_1475	trd_1475		trd_1475	1462417	1462530	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1465	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1475
trd_1476	trd_1476		trd_1476	1462524	1463789	+	glutamate dehydrogenase	identified by match to protein family HMM PF00208%3B match to protein family HMM PF02812	gene	gene1466	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1476
trd_1477	trd_1477		trd_1477	1464138	1465208	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1467	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1477
trd_1478	trd_1478		trd_1478	1465375	1466043	-	potassium channel related protein	identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254	gene	gene1468	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1478
trd_1479	trd_1479		trd_1479	1466078	1466497	-	Trk system potassium uptake protein trkA	identified by match to protein family HMM PF02254	gene	gene1469	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1479
trd_1480	trd_1480		trd_1480	1466494	1466931	-	universal stress protein family	identified by match to protein family HMM PF00582	gene	gene1470	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1480
trd_1481	trd_1481		trd_1481	1466984	1467715	-	phosphatase family protein	identified by match to protein family HMM PF00149	gene	gene1471	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1481
trd_1482	trd_1482		trd_1482	1467690	1467827	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1472	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1482
trd_1483	trd_1483		trd_1483	1467927	1468679	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1473	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1483
trd_1484	trd_1484		trd_1484	1468851	1469276	+	transcription regulator%2C ArsR family	identified by match to protein family HMM PF01022	gene	gene1474	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1484
trd_1485	trd_1485		trd_1485	1469280	1469489	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1475	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1485
trd_1486	trd_1486		trd_1486	1469482	1470216	+	putative integral membrane transporter	identified by match to protein family HMM PF02683	gene	gene1476	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1486
trd_1487	trd_1487		trd_1487	1471073	1472356	-	transporter%2C major facilitator family	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene1478	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1487
trd_1488	trd_1488		trd_1488	1470248	1471090	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1477	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1488
trd_1489	trd_1489		trd_1489	1472728	1473951	-	putative efflux protein	identified by match to protein family HMM PF07690	gene	gene1480	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1489
trd_1490	trd_1490		trd_1490	1472413	1472739	+	Cupin domain protein	identified by match to protein family HMM PF07883	gene	gene1479	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1490
trd_1491	trd_1491		trd_1491	1473908	1474237	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1481	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1491
trd_1492	trd_1492		trd_1492	1474263	1475819	+	dihydrolipoamide S-acetyltransferase	identified by match to protein family HMM PF00364%3B match to protein family HMM PF00561%3B match to protein family HMM PF02129%3B match to protein family HMM PF02817	gene	gene1482	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1492
trd_1493	trd_1493		trd_1493	1475834	1476826	+	TPP-dependent acetoin dehydrogenase alpha-subunit	identified by match to protein family HMM PF00676	gene	gene1483	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1493
trd_1494	trd_1494		trd_1494	1476844	1477863	+	2-oxoisovalerate dehydrogenase beta subunit	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene1484	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1494
trd_1495	trd_1495		trd_1495	1477860	1478873	+	acetoin catabolism protein X	identified by match to protein family HMM PF01513	gene	gene1485	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1495
trd_1496	trd_1496		trd_1496	1479225	1479710	-	mgtC family protein	identified by match to protein family HMM PF02308	gene	gene1486	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1496
trd_1497	trd_1497		trd_1497	1479971	1480345	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1487	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1497
trd_1498	trd_1498		trd_1498	1480349	1480690	-	putative membrane protein mmpL7		gene	gene1488	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1498
trd_1499	trd_1499		trd_1499	1480703	1481332	-	putative lipoprotein		gene	gene1489	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1499
trd_1500	trd_1500		trd_1500	1481582	1481707	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1490	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1500
trd_1501	trd_1501		trd_1501	1481966	1482544	+	RNA polymerase ECF-type sigma factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene1491	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1501
trd_1502	trd_1502		trd_1502	1482541	1483650	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1492	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1502
trd_1503	trd_1503		trd_1503	1483721	1484677	+	copper transport ATP-binding protein nosF	identified by match to protein family HMM PF00005	gene	gene1493	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1503
trd_1504	trd_1504		trd_1504	1484674	1485531	+	putative ABC-type transport system involved in multi-copper enzyme maturation%2C permease component		gene	gene1494	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1504
trd_1505	trd_1505		trd_1505	1486241	1487506	-	processing protease	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene1496	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1505
trd_1506	trd_1506		trd_1506	1485609	1486244	+	putative metallo-beta-lactamase superfamily	identified by match to protein family HMM PF00753	gene	gene1495	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1506
trd_1507	trd_1507		trd_1507	1487520	1488020	-	competence/damage-inducible protein CinA C-terminal domain	identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199	gene	gene1497	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1507
trd_1508	trd_1508		trd_1508	1488057	1489322	-	putative membrane transport protein	identified by match to protein family HMM PF07690	gene	gene1498	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1508
trd_1509	trd_1509		trd_1509	1489429	1490277	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1499	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1509
trd_1510	trd_1510		trd_1510	1490279	1491241	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1500	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1510
trd_1511	trd_1511		trd_1511	1491306	1491971	-	putative 3-methyladenine DNA glycosylase	identified by match to protein family HMM PF02245%3B match to protein family HMM TIGR00567	gene	gene1501	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1511
trd_1512	trd_1512	valS	valS	1492167	1494845	-	valyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00422	gene	gene1502	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1512
trd_1513	trd_1513		trd_1513	1494828	1495196	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene1503	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1513
trd_1514	trd_1514		trd_1514	1495353	1495649	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1504	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1514
trd_1515	trd_1515		trd_1515	1495663	1496850	-	acetylornithine aminotransferase	identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00707	gene	gene1505	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1515
trd_1516	trd_1516	argB	argB	1496847	1497692	-	acetylglutamate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00761	gene	gene1506	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1516
trd_1517	trd_1517		trd_1517	1497689	1498339	-	conserved hypothetical protein	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1507	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1517
trd_1518	trd_1518	argC	argC	1498350	1499408	-	N-acetyl-gamma-glutamyl-phosphate reductase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01850	gene	gene1508	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1518
trd_1519	trd_1519	lysX	lysX	1499443	1500327	-	Lysine biosynthesis enzyme LysX	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM PF02655%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR00768%3B match to protein family HMM TIGR02144	gene	gene1509	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1519
trd_1520	trd_1520		trd_1520	1500324	1501418	-	N-acetyl-ornithine/N-acetyl-lysine deacetylase subfamily	identified by match to protein family HMM PF01546%3B match to protein family HMM TIGR01902	gene	gene1510	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1520
trd_1521	trd_1521		trd_1521	1501415	1502248	-	putative lysine biosynthesis enzyme LysX	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF08443	gene	gene1511	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1521
trd_1522	trd_1522	lysW	lysW	1502251	1502406	-	lysine biosynthesis protein LysW	identified by match to protein family HMM TIGR01206	gene	gene1512	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1522
trd_1523	trd_1523		trd_1523	1502939	1504612	+	putative ABC transporter periplasmic binding protein A	identified by match to protein family HMM PF00496%3B match to protein family HMM TIGR01409	gene	gene1513	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1523
trd_1524	trd_1524		trd_1524	1504670	1505617	+	dipeptide ABC transporter permease	identified by match to protein family HMM PF00528	gene	gene1514	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1524
trd_1525	trd_1525		trd_1525	1505632	1506531	+	oligopeptide ABC transporter permease protein	identified by match to protein family HMM PF00528	gene	gene1515	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1525
trd_1526	trd_1526		trd_1526	1506663	1507325	+	conserved hypothetical protein	identified by match to protein family HMM PF01022%3B match to protein family HMM PF08279	gene	gene1516	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1526
trd_1527	trd_1527		trd_1527	1507330	1507458	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1517	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1527
trd_1528	trd_1528	cadA	cadA	1507476	1509575	-	cadmium-translocating P-type ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525	gene	gene1518	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1528
trd_1529	trd_1529		trd_1529	1509550	1509921	-	putative ArsR-family regulator	identified by match to protein family HMM PF01022	gene	gene1519	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1529
trd_1530	trd_1530	metG	metG	1510507	1512261	+	methionyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00398	gene	gene1520	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1530
trd_1531	trd_1531		trd_1531	1512523	1514769	-	probable soluble lytic murein transglycosylase precursor	identified by match to protein family HMM PF00515%3B match to protein family HMM PF01464%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721	gene	gene1521	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1531
trd_1532	trd_1532		trd_1532	1514905	1515174	+	conserved hypothetical protein		gene	gene1522	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1532
trd_1533	trd_1533		trd_1533	1515409	1515618	+	conserved hypothetical protein		gene	gene1523	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1533
trd_1534	trd_1534		trd_1534	1515615	1516088	+	conserved hypothetical protein		gene	gene1524	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1534
trd_1535	trd_1535		trd_1535	1516165	1516956	+	dolichol-P-glucose synthetase	identified by match to protein family HMM PF00535	gene	gene1525	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1535
trd_1536	trd_1536		trd_1536	1516994	1518022	+	BNR/Asp-box repeat domain protein	identified by match to protein family HMM PF02012	gene	gene1526	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1536
trd_1537	trd_1537		trd_1537	1518062	1519315	-	MFS permease	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710	gene	gene1527	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1537
trd_1538	trd_1538		trd_1538	1519786	1520973	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1528	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1538
trd_1539	trd_1539		trd_1539	1521042	1521392	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1529	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1539
trd_1540	trd_1540		trd_1540	1521643	1522683	-	putative transcriptional regulator	identified by match to protein family HMM PF08279	gene	gene1530	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1540
trd_1541	trd_1541		trd_1541	1522773	1523600	+	N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase	identified by match to protein family HMM PF03808%3B match to protein family HMM TIGR00696	gene	gene1531	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1541
trd_1542	trd_1542		trd_1542	1523597	1524148	+	putative membrane protein		gene	gene1532	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1542
trd_1543	trd_1543		trd_1543	1525161	1527053	-	ABC transporter ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene1534	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1543
trd_1544	trd_1544		trd_1544	1524145	1525164	+	bifunctional protein hldE	identified by match to protein family HMM PF00294	gene	gene1533	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1544
trd_1545	trd_1545		trd_1545	1527146	1527331	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1535	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1545
trd_1546	trd_1546		trd_1546	1527400	1528362	-	Luciferase-like monooxygenase superfamily	identified by match to protein family HMM PF00296	gene	gene1536	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1546
trd_1547	trd_1547		trd_1547	1528521	1529627	+	hdac6 protein	identified by match to protein family HMM PF00850	gene	gene1537	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1547
trd_1548	trd_1548		trd_1548	1529637	1529915	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1538	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1548
trd_1549	trd_1549	uvrB	uvrB	1530073	1532079	+	excinuclease ABC%2C B subunit	identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00631	gene	gene1539	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1549
trd_1550	trd_1550		trd_1550	1532172	1532750	-	putative membrane protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1540	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1550
trd_1551	trd_1551		trd_1551	1533081	1533854	-	putative two-component system response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene1541	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1551
trd_1552	trd_1552		trd_1552	1533718	1535139	-	putative two component system histidine kinase	identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730	gene	gene1542	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1552
trd_1553	trd_1553		trd_1553	1535420	1535803	+	HesB/YadR/YfhF	identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049	gene	gene1543	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1553
trd_1554	trd_1554		trd_1554	1535930	1536067	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1545	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1554
trd_1555	trd_1555		trd_1555	1535891	1535976	+	tRNA-Leu		tRNA	gene1544	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1555
trd_1556	trd_1556		trd_1556	1536266	1536460	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1546	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1556
trd_1557	trd_1557	glnA	glnA	1536527	1537996	-	glutamine synthetase%2C type I	identified by match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653	gene	gene1547	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1557
trd_1558	trd_1558	glnA	glnA	1538062	1539510	-	glutamine synthetase%2C type I	identified by match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653	gene	gene1548	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1558
trd_1559	trd_1559		trd_1559	1540072	1543098	+	c-di-GMP phosphodiesterase A	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM PF08447%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1549	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1559
trd_1560	trd_1560		trd_1560	1543124	1544698	-	methylmalonyl Coenzyme A mutase	identified by match to protein family HMM PF01642%3B match to protein family HMM TIGR00641	gene	gene1550	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1560
trd_1561	trd_1561		trd_1561	1544802	1544984	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1551	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1561
trd_1562	trd_1562	lon	lon	1545230	1547548	+	ATP-dependent protease La	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763	gene	gene1552	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1562
trd_1563	trd_1563		trd_1563	1547659	1549437	+	peptidase%2C M28 family	this gene contains a nucleotide ambiguity which may be the result of a sequencing error%3B identified by match to protein family HMM PF04389	gene	gene1553	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1563
trd_1564	trd_1564		trd_1564	1550620	1551093	-	lipoyltransferase	identified by match to protein family HMM PF00293	gene	gene1555	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1564
trd_1565	trd_1565		trd_1565	1549505	1550623	+	Rod shape-determining protein mreB	this gene contains a nucleotide ambiguity which may be the result of a sequencing error%3B identified by match to protein family HMM PF02491%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904	gene	gene1554	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1565
trd_1566	trd_1566		trd_1566	1551180	1551611	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1556	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1566
trd_1567	trd_1567		trd_1567	1551623	1552789	-	cysteine desulfurase/cysteine sulfinate desulfinase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00266%3B match to protein family HMM PF01041%3B match to protein family HMM PF01053%3B match to protein family HMM PF01212	gene	gene1557	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1567
trd_1568	trd_1568		trd_1568	1552795	1553826	-	putative molybdopterin biosynthesis MoeB protein	identified by match to protein family HMM PF00899%3B match to protein family HMM PF05237	gene	gene1558	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1568
trd_1569	trd_1569		trd_1569	1554456	1555487	-	Prephenate dehydrogenase	identified by match to protein family HMM PF02153%3B match to protein family HMM PF02737%3B match to protein family HMM PF03807	gene	gene1560	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1569
trd_1570	trd_1570		trd_1570	1553977	1554459	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1559	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1570
trd_1571	trd_1571		trd_1571	1555659	1556150	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1561	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1571
trd_1572	trd_1572		trd_1572	1556280	1557779	+	aldh	identified by match to protein family HMM PF00171	gene	gene1562	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1572
trd_1573	trd_1573		trd_1573	1557844	1557984	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1563	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1573
trd_1574	trd_1574		trd_1574	1558066	1558944	-	putative monooxygenase	identified by match to protein family HMM PF00296	gene	gene1564	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1574
trd_1575	trd_1575		trd_1575	1559023	1559232	-	putative lipoprotein		gene	gene1565	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1575
trd_1576	trd_1576		trd_1576	1560593	1561336	+	putative lipoprotein		gene	gene1566	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1576
trd_1577	trd_1577		trd_1577	1561547	1562248	+	putative lipoprotein		gene	gene1567	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1577
trd_1578	trd_1578		trd_1578	1562286	1563470	+	conserved hypothetical protein		gene	gene1568	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1578
trd_1579	trd_1579		trd_1579	1563454	1564461	+	uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208	gene	gene1569	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1579
trd_1580	trd_1580		trd_1580	1564470	1565513	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1570	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1580
trd_1581	trd_1581	cad	cad	1565537	1567024	-	lysine decarboxylase	identified by match to protein family HMM PF00202%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM PF01276%3B match to protein family HMM PF03711	gene	gene1571	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1581
trd_1582	trd_1582		trd_1582	1567173	1567955	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1572	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1582
trd_1583	trd_1583		trd_1583	1568652	1569299	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1573	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1583
trd_1584	trd_1584		trd_1584	1569406	1570875	-	conserved hypothetical protein		gene	gene1574	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1584
trd_1585	trd_1585		trd_1585	1570872	1571168	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1575	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1585
trd_1586	trd_1586		trd_1586	1572335	1573624	-	phage domain protein		gene	gene1576	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1586
trd_1587	trd_1587		trd_1587	1574143	1575498	+	thermitase	identified by match to protein family HMM PF00082	gene	gene1577	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1587
trd_1588	trd_1588		trd_1588	1576479	1578695	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1578	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1588
trd_1589	trd_1589		trd_1589	1579259	1579462	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1579	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1589
trd_1590	trd_1590		trd_1590	1579553	1580698	+	Uncharacterized ACR	identified by match to protein family HMM PF02636	gene	gene1580	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1590
trd_1591	trd_1591		trd_1591	1580817	1581065	-	O-methyltransferase		gene	gene1581	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1591
trd_1592	trd_1592		trd_1592	1581303	1582241	+	glycosyltransferase	identified by match to protein family HMM PF00535	gene	gene1582	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1592
trd_1593	trd_1593		trd_1593	1582228	1584006	+	dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol%2C a-3-L-rhamnosyl transferase	identified by match to protein family HMM PF00535	gene	gene1583	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1593
trd_1594	trd_1594		trd_1594	1584017	1585165	+	glycosyl transferase%2C group 1 family protein	identified by match to protein family HMM PF00534	gene	gene1584	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1594
trd_1595	trd_1595		trd_1595	1585244	1585636	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1585	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1595
trd_1596	trd_1596		trd_1596	1585657	1586958	+	conserved hypothetical protein		gene	gene1586	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1596
trd_1597	trd_1597		trd_1597	1587739	1588101	-	hypothetical membrane spanning protein		gene	gene1587	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1597
trd_1598	trd_1598		trd_1598	1588238	1590706	-	putative hemagglutinin/hemolysin-related protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02369	gene	gene1588	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1598
trd_1599	trd_1599		trd_1599	1591041	1592306	-	histidine kinase PhoR1	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229	gene	gene1589	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1599
trd_1600	trd_1600	phoP	phoP	1592372	1593091	-	alkaline phosphatase synthesis transcriptional regulatory protein PhoP	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1590	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1600
trd_1601	trd_1601		trd_1601	1593196	1594299	+	probable smf protein	identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732	gene	gene1591	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1601
trd_1602	trd_1602		trd_1602	1594296	1595369	+	mannose-1-phosphate guanylyltransferase (GDP)	identified by match to protein family HMM PF00483	gene	gene1592	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1602
trd_1603	trd_1603	topA	topA	1595416	1597650	+	DNA topoisomerase I	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051	gene	gene1593	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1603
trd_1604	trd_1604	hslV	hslV	1597706	1598299	+	heat shock protein HslV	identified by match to protein family HMM PF00227%3B match to protein family HMM TIGR03692	gene	gene1594	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1604
trd_1605	trd_1605	hslU	hslU	1598277	1599701	+	heat shock protein HslVU%2C ATPase subunit HslU	identified by match to protein family HMM PF07724%3B match to protein family HMM TIGR00390	gene	gene1595	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1605
trd_1606	trd_1606		trd_1606	1599721	1600443	+	dolichyl-phosphate mannose synthase related protein	identified by match to protein family HMM PF00535	gene	gene1596	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1606
trd_1607	trd_1607		trd_1607	1600451	1601428	+	transcriptional repressor	identified by match to protein family HMM PF00480	gene	gene1597	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1607
trd_1608	trd_1608		trd_1608	1603189	1603434	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1599	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1608
trd_1609	trd_1609		trd_1609	1601448	1603235	+	putative dipeptide ABC transporter dipeptide-binding protein	identified by match to protein family HMM PF00496	gene	gene1598	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1609
trd_1610	trd_1610	ilvE	ilvE	1603420	1604382	+	branched-chain amino acid aminotransferase	identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01122	gene	gene1600	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1610
trd_1611	trd_1611		trd_1611	1604401	1605897	-	glutamate-1-semialdehyde 2%2C1-aminomutase	identified by match to protein family HMM PF00202	gene	gene1601	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1611
trd_1612	trd_1612		trd_1612	1605882	1606904	+	1-aminocyclopropane-1-carboxylate deaminase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01275	gene	gene1602	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1612
trd_1613	trd_1613		trd_1613	1606901	1609339	+	primosomal protein N'	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595	gene	gene1603	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1613
trd_1614	trd_1614	def	def	1609384	1609914	+	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene1604	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1614
trd_1615	trd_1615		trd_1615	1609918	1610571	-	guanylate kinase	identified by match to protein family HMM PF00625	gene	gene1605	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1615
trd_1616	trd_1616		trd_1616	1610688	1612448	+	putative fibronectin-binding protein	identified by match to protein family HMM PF05670%3B match to protein family HMM PF05833	gene	gene1606	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1616
trd_1617	trd_1617	tatC	tatC	1612455	1613231	-	Sec-independent protein translocase TatC	identified by match to protein family HMM PF00902%3B match to protein family HMM TIGR00945	gene	gene1607	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1617
trd_1618	trd_1618	acpP	acpP	1613336	1613581	-	acyl carrier protein	identified by match to protein family HMM PF00550%3B match to protein family HMM TIGR00517	gene	gene1608	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1618
trd_1619	trd_1619	nusB	nusB	1614121	1614627	-	transcription antitermination factor NusB	identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951	gene	gene1609	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1619
trd_1620	trd_1620	accC	accC	1614706	1616058	-	acetyl-CoA carboxylase%2C biotin carboxylase	identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM TIGR00514	gene	gene1610	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1620
trd_1621	trd_1621	fabG	fabG	1616064	1616813	-	3-oxoacyl-(acyl-carrier-protein) reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF08659%3B match to protein family HMM TIGR01830	gene	gene1611	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1621
trd_1622	trd_1622	fabD	fabD	1616810	1617793	-	malonyl CoA-acyl carrier protein transacylase	identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128	gene	gene1612	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1622
trd_1623	trd_1623		trd_1623	1617753	1618760	-	3-oxoacyl-[acyl-carrier-protein] synthase III protein 1	identified by match to protein family HMM PF08541%3B match to protein family HMM PF08545%3B match to protein family HMM TIGR00747	gene	gene1613	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1623
trd_1624	trd_1624		trd_1624	1618788	1619093	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1614	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1624
trd_1625	trd_1625		trd_1625	1619094	1619618	-	Uncharacterized ACR	identified by match to protein family HMM PF02620	gene	gene1615	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1625
trd_1626	trd_1626		trd_1626	1619768	1620532	+	2-dehydro-3-deoxyglucarate aldolase	identified by match to protein family HMM PF03328	gene	gene1616	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1626
trd_1627	trd_1627	ilvE	ilvE	1620571	1621521	+	branched-chain amino acid aminotransferase	identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01122	gene	gene1617	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1627
trd_1628	trd_1628		trd_1628	1621596	1623320	+	protein precursor	identified by match to protein family HMM PF00496	gene	gene1618	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1628
trd_1629	trd_1629		trd_1629	1623512	1624537	+	oligopeptide ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene1619	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1629
trd_1630	trd_1630		trd_1630	1624527	1625561	+	oligopeptide ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene1620	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1630
trd_1631	trd_1631		trd_1631	1625568	1626212	+	metal-dependent protease	identified by match to protein family HMM PF02163	gene	gene1621	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1631
trd_1632	trd_1632	scpA	scpA	1626226	1626945	+	segregation and condensation protein A	identified by match to protein family HMM PF02616	gene	gene1622	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1632
trd_1633	trd_1633	scpB	scpB	1626932	1627498	+	segregation and condensation protein B	identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281	gene	gene1623	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1633
trd_1634	trd_1634		trd_1634	1628640	1629812	-	cysteine desulfurase	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR03402	gene	gene1624	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1634
trd_1635	trd_1635		trd_1635	1629847	1630287	-	Transcriptional regulator superfamily	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene1625	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1635
trd_1636	trd_1636	prfB	prfB	1630474	1631599	+	peptide chain release factor 2%2C programmed frameshift	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020	gene	gene1626	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1636
trd_1637	trd_1637		trd_1637	1631568	1632809	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1627	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1637
trd_1638	trd_1638	hrcA	hrcA	1632917	1633963	+	heat-inducible transcription repressor HrcA	identified by match to protein family HMM PF01628%3B match to protein family HMM TIGR00331	gene	gene1628	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1638
trd_1639	trd_1639	grpE	grpE	1633966	1634622	+	co-chaperone GrpE	identified by match to protein family HMM PF01025	gene	gene1629	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1639
trd_1640	trd_1640	dnaK	dnaK	1634625	1636526	+	chaperone protein DnaK	identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350	gene	gene1630	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1640
trd_1641	trd_1641		trd_1641	1637591	1638094	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1631	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1641
trd_1642	trd_1642		trd_1642	1638098	1639882	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1632	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1642
trd_1643	trd_1643		trd_1643	1639998	1641380	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1633	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1643
trd_1644	trd_1644		trd_1644	1642600	1643487	+	putative phage structural protein		gene	gene1634	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1644
trd_1645	trd_1645		trd_1645	1643741	1643965	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1635	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1645
trd_1646	trd_1646		trd_1646	1643956	1644768	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1636	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1646
trd_1647	trd_1647		trd_1647	1644884	1646125	+	N-acetylmuramoyl-L-alanine amidase%2C family 2	identified by match to protein family HMM PF01510	gene	gene1637	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1647
trd_1648	trd_1648		trd_1648	1646122	1646481	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1638	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1648
trd_1649	trd_1649		trd_1649	1647521	1648072	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1639	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1649
trd_1650	trd_1650		trd_1650	1648988	1649143	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1640	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1650
trd_1651	trd_1651		trd_1651	1649577	1649699	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1641	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1651
trd_1652	trd_1652		trd_1652	1649867	1649961	-	tRNA-Ser		tRNA	gene1642	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1652
trd_1653	trd_1653		trd_1653	1649976	1650062	-	tRNA-Ser		tRNA	gene1643	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1653
trd_1654	trd_1654		trd_1654	1650566	1651063	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1644	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1654
trd_1655	trd_1655		trd_1655	1651062	1653407	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1645	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1655
trd_1656	trd_1656		trd_1656	1655079	1655489	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1647	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1656
trd_1657	trd_1657		trd_1657	1653493	1655085	+	putative helix-turn-helix%2C Fis-type	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1646	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1657
trd_1658	trd_1658		trd_1658	1655595	1657313	+	putative S-layer associated protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00188	gene	gene1648	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1658
trd_1659	trd_1659		trd_1659	1657838	1658659	-	glycerophosphoryl diester phosphodiesterase	identified by match to protein family HMM PF03009	gene	gene1650	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1659
trd_1660	trd_1660		trd_1660	1657368	1657862	+	GAF domain protein	identified by match to protein family HMM PF01590	gene	gene1649	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1660
trd_1661	trd_1661		trd_1661	1658647	1659297	-	membrane-associated phospholipid phosphatase	identified by match to protein family HMM PF01569	gene	gene1651	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1661
trd_1662	trd_1662	ispH	ispH	1659320	1660282	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216	gene	gene1652	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1662
trd_1663	trd_1663		trd_1663	1660263	1661018	-	hydrolase%2C HAD superfamily	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene1653	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1663
trd_1664	trd_1664	rfbD	rfbD	1662814	1663659	-	dTDP-4-dehydrorhamnose reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01214	gene	gene1655	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1664
trd_1665	trd_1665		trd_1665	1661112	1662848	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1654	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1665
trd_1666	trd_1666		trd_1666	1663744	1664589	+	probable endonuclease IV	identified by match to protein family HMM PF01261%3B match to protein family HMM TIGR00587	gene	gene1656	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1666
trd_1667	trd_1667		trd_1667	1664739	1665833	+	putative sensor kinase	identified by match to protein family HMM PF02518%3B match to protein family HMM PF07730	gene	gene1657	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1667
trd_1668	trd_1668	hexB	hexB	1666564	1668291	-	DNA mismatch repair protein HexB	identified by match to protein family HMM PF01119%3B match to protein family HMM PF02518%3B match to protein family HMM PF08676%3B match to protein family HMM TIGR00585	gene	gene1659	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1668
trd_1669	trd_1669		trd_1669	1665830	1666567	+	transcriptional regulatory protein degU	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196%3B match to protein family HMM PF08279	gene	gene1658	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1669
trd_1670	trd_1670		trd_1670	1668495	1669871	+	RDD family protein	identified by match to protein family HMM PF06271	gene	gene1660	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1670
trd_1671	trd_1671		trd_1671	1670199	1671893	+	putative periplasmic dipeptide transport substrate-binding protein	identified by match to protein family HMM PF00496	gene	gene1661	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1671
trd_1672	trd_1672		trd_1672	1671941	1672903	+	oligopeptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1662	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1672
trd_1673	trd_1673		trd_1673	1672907	1673785	+	ABC transporter%2C membrane spanning protein (dipeptide)	identified by match to protein family HMM PF00528	gene	gene1663	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1673
trd_1674	trd_1674		trd_1674	1674458	1675402	+	putative sugar uptake ABC transporter permease protein	identified by match to protein family HMM PF00528	gene	gene1664	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1674
trd_1675	trd_1675		trd_1675	1675407	1676306	+	inner membrane ABC transporter permease protein ycjP	identified by match to protein family HMM PF00528	gene	gene1665	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1675
trd_1676	trd_1676		trd_1676	1676328	1677785	+	putative Bacterial extracellular solute-binding protein	identified by match to protein family HMM PF01547	gene	gene1666	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1676
trd_1677	trd_1677		trd_1677	1677867	1679477	+	putative groEL	identified by match to protein family HMM PF00118	gene	gene1667	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1677
trd_1678	trd_1678		trd_1678	1679498	1681303	+	BNR/Asp-box repeat domain protein	identified by match to protein family HMM PF02012	gene	gene1668	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1678
trd_1679	trd_1679		trd_1679	1681498	1681884	+	GTP cyclohydrolase family protein	identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR03139	gene	gene1669	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1679
trd_1680	trd_1680		trd_1680	1682186	1682299	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1670	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1680
trd_1681	trd_1681		trd_1681	1682320	1684134	+	phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein	identified by match to protein family HMM PF00391	gene	gene1671	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1681
trd_1682	trd_1682	accB	accB	1684173	1684763	+	acetyl-CoA carboxylase%2C biotin carboxyl carrier protein	identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531	gene	gene1672	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1682
trd_1683	trd_1683		trd_1683	1684776	1686266	+	pyruvate carboxylase subunit B	identified by match to protein family HMM PF00682	gene	gene1673	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1683
trd_1684	trd_1684		trd_1684	1686292	1687149	+	sugar phosphatase of the HAD superfamily	identified by match to protein family HMM PF00702	gene	gene1674	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1684
trd_1685	trd_1685		trd_1685	1687163	1688494	+	putative phenylacetate-CoA ligase		gene	gene1675	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1685
trd_1686	trd_1686		trd_1686	1688968	1689084	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1676	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1686
trd_1687	trd_1687		trd_1687	1689092	1690060	-	lipase	identified by match to protein family HMM PF07859	gene	gene1677	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1687
trd_1688	trd_1688		trd_1688	1690166	1691041	-	Catalytic LigB subunit of aromatic ring-opening dioxygenase superfamily	identified by match to protein family HMM PF02900	gene	gene1678	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1688
trd_1689	trd_1689		trd_1689	1691196	1691777	+	conserved hypothetical protein		gene	gene1679	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1689
trd_1690	trd_1690	leuA	leuA	1692304	1693842	+	2-isopropylmalate synthase	identified by match to protein family HMM PF00682%3B match to protein family HMM PF08502%3B match to protein family HMM TIGR00973	gene	gene1680	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1690
trd_1691	trd_1691	leuC	leuC	1693839	1695107	+	3-isopropylmalate dehydratase%2C large subunit	identified by match to protein family HMM PF00330%3B match to protein family HMM TIGR01343%3B match to protein family HMM TIGR02083%3B match to protein family HMM TIGR02086	gene	gene1681	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1691
trd_1692	trd_1692	leuD	leuD	1695182	1695700	+	3-isopropylmalate dehydratase%2C small subunit	identified by match to protein family HMM PF00694%3B match to protein family HMM TIGR02084%3B match to protein family HMM TIGR02087	gene	gene1682	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1692
trd_1693	trd_1693	leuB	leuB	1695697	1696818	+	3-isopropylmalate dehydrogenase	identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00169	gene	gene1683	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1693
trd_1694	trd_1694		trd_1694	1697437	1698582	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1684	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1694
trd_1695	trd_1695		trd_1695	1698610	1700283	+	spore peptidoglycan hydrolase	identified by match to protein family HMM PF00704	gene	gene1685	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1695
trd_1696	trd_1696	aroQ	aroQ	1700280	1700735	+	3-dehydroquinate dehydratase%2C type II	identified by match to protein family HMM PF01220%3B match to protein family HMM TIGR01088	gene	gene1686	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1696
trd_1697	trd_1697		trd_1697	1700732	1701835	+	PepQ	identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321	gene	gene1687	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1697
trd_1698	trd_1698	efp	efp	1701932	1702492	+	translation elongation factor P	identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM PF09285%3B match to protein family HMM TIGR00038	gene	gene1688	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1698
trd_1699	trd_1699	accB	accB	1702495	1702974	+	acetyl-CoA carboxylase%2C biotin carboxyl carrier protein	identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531	gene	gene1689	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1699
trd_1700	trd_1700	xseA	xseA	1702987	1704204	+	exodeoxyribonuclease VII%2C large subunit	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237	gene	gene1690	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1700
trd_1701	trd_1701	xseB	xseB	1704217	1704507	+	exodeoxyribonuclease VII%2C small subunit	identified by match to protein family HMM PF02609%3B match to protein family HMM TIGR01280	gene	gene1691	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1701
trd_1702	trd_1702		trd_1702	1705552	1705680	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1692	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1702
trd_1703	trd_1703		trd_1703	1705817	1707745	+	serine proteinase	identified by match to protein family HMM PF00082%3B match to protein family HMM PF05922	gene	gene1693	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1703
trd_1704	trd_1704		trd_1704	1708080	1708667	+	conserved hypothetical protein		gene	gene1694	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1704
trd_1705	trd_1705		trd_1705	1708864	1709529	+	hypothetical transcriptional regulator	identified by match to protein family HMM PF01047	gene	gene1695	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1705
trd_1706	trd_1706		trd_1706	1709869	1709941	+	tRNA-Arg		tRNA	gene1696	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1706
trd_1707	trd_1707		trd_1707	1710059	1710274	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1697	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1707
trd_1708	trd_1708		trd_1708	1710292	1711005	+	molybdenum cofactor biosynthesis protein D/E	identified by match to protein family HMM PF02391%3B match to protein family HMM PF02597%3B match to protein family HMM TIGR01682%3B match to protein family HMM TIGR01687	gene	gene1698	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1708
trd_1709	trd_1709		trd_1709	1711015	1712241	-	putative molybdopterin biosynthesis protein	identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177	gene	gene1699	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1709
trd_1710	trd_1710		trd_1710	1712495	1712620	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1700	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1710
trd_1711	trd_1711		trd_1711	1712681	1714843	+	GTP pyrophosphokinase	identified by match to protein family HMM PF01842%3B match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691	gene	gene1701	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1711
trd_1712	trd_1712		trd_1712	1714851	1716254	-	putative GTPase of unknown function subfamily	identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM PF09269%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR02729%3B match to protein family HMM TIGR03595	gene	gene1702	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1712
trd_1713	trd_1713		trd_1713	1716317	1717846	-	RNA polymerase sigma 70 subunit%2C RpoD	identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937	gene	gene1703	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1713
trd_1714	trd_1714	lysA	lysA	1717928	1719277	-	diaminopimelate decarboxylase	identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048	gene	gene1704	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1714
trd_1715	trd_1715		trd_1715	1719328	1721295	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1705	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1715
trd_1716	trd_1716	coaE	coaE	1721297	1722046	+	dephospho-CoA kinase	identified by match to protein family HMM PF01121%3B match to protein family HMM TIGR00152	gene	gene1706	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1716
trd_1717	trd_1717		trd_1717	1722108	1723181	+	glutamine amidotransferase%2C class II/dipeptidase	identified by match to protein family HMM PF01244	gene	gene1707	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1717
trd_1718	trd_1718		trd_1718	1723307	1724476	+	srebp protease/cbs domain	identified by match to protein family HMM PF00571%3B match to protein family HMM PF02163	gene	gene1708	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1718
trd_1719	trd_1719		trd_1719	1724484	1725596	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1709	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1719
trd_1720	trd_1720		trd_1720	1725593	1727245	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1710	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1720
trd_1721	trd_1721		trd_1721	1727276	1727884	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1711	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1721
trd_1722	trd_1722	dtd	dtd	1727963	1728427	-	D-tyrosyl-tRNA(Tyr) deacylase	identified by match to protein family HMM PF02580%3B match to protein family HMM TIGR00256	gene	gene1712	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1722
trd_1723	trd_1723	ispF	ispF	1728433	1728942	-	2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151	gene	gene1713	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1723
trd_1724	trd_1724	ispD	ispD	1728939	1729634	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM PF01128%3B match to protein family HMM TIGR00453	gene	gene1714	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1724
trd_1725	trd_1725		trd_1725	1729634	1730767	-	nucleotide binding protein%2C PINc	identified by match to protein family HMM PF01850%3B match to protein family HMM PF01938	gene	gene1715	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1725
trd_1726	trd_1726		trd_1726	1730801	1731658	-	putative PHP domain	identified by match to protein family HMM PF02811	gene	gene1716	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1726
trd_1727	trd_1727		trd_1727	1731711	1732109	-	spoVS-related protein		gene	gene1717	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1727
trd_1728	trd_1728	pyk	pyk	1732620	1734059	-	pyruvate kinase	identified by match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064	gene	gene1718	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1728
trd_1729	trd_1729		trd_1729	1734271	1734672	+	alchohol dehydrogenase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene1719	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1729
trd_1730	trd_1730		trd_1730	1734690	1735049	+	zinc-dependent alcohol dehydrogenase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene1720	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1730
trd_1731	trd_1731		trd_1731	1735820	1735939	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1722	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1731
trd_1732	trd_1732		trd_1732	1735336	1735839	+	predicted coding region	identified by match to protein family HMM PF04008	gene	gene1721	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1732
trd_1733	trd_1733		trd_1733	1735954	1736967	+	TPP-dependent acetoin dehydrogenase alpha-subunit	identified by match to protein family HMM PF00676%3B match to protein family HMM TIGR03182	gene	gene1723	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1733
trd_1734	trd_1734		trd_1734	1736986	1737990	+	pyruvate dehydrogenase E1 component%2C beta subunit	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene1724	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1734
trd_1735	trd_1735	aceF	aceF	1738021	1739349	+	pyruvate dehydrogenase complex%2C E2 component%2C dihydrolipoamide acetyltransferase	identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817	gene	gene1725	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1735
trd_1736	trd_1736		trd_1736	1739547	1741643	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1726	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1736
trd_1737	trd_1737		trd_1737	1741779	1742153	-	hypothetical conserved protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B similar to BH1266	gene	gene1727	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1737
trd_1738	trd_1738		trd_1738	1742154	1742513	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1728	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1738
trd_1739	trd_1739		trd_1739	1742571	1742912	-	conserved hypothetical protein		gene	gene1729	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1739
trd_1740	trd_1740	uvrA	uvrA	1743012	1745897	+	excinuclease ABC%2C A subunit	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630	gene	gene1730	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1740
trd_1741	trd_1741		trd_1741	1746044	1746664	+	putative endonuclease	identified by match to protein family HMM PF01844	gene	gene1731	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1741
trd_1742	trd_1742	serS	serS	1746722	1748059	+	seryl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414	gene	gene1732	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1742
trd_1743	trd_1743		trd_1743	1748063	1749118	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1733	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1743
trd_1744	trd_1744		trd_1744	1749143	1749973	+	Prokaryotic protein of unknown function (DUF849)	identified by match to protein family HMM PF05853	gene	gene1734	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1744
trd_1745	trd_1745		trd_1745	1749980	1751455	+	MlrC C-terminus family	identified by match to protein family HMM PF07171%3B match to protein family HMM PF07364	gene	gene1735	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1745
trd_1746	trd_1746		trd_1746	1751460	1755023	-	putative chromosome segregation protein	identified by match to protein family HMM PF02463%3B match to protein family HMM PF06470%3B match to protein family HMM TIGR00650	gene	gene1736	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1746
trd_1747	trd_1747	galE	galE	1755038	1756027	-	UDP-glucose 4-epimerase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179	gene	gene1737	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1747
trd_1748	trd_1748	ppa	ppa	1756042	1756722	-	inorganic pyrophosphatase	identified by match to protein family HMM PF00719	gene	gene1738	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1748
trd_1749	trd_1749		trd_1749	1756464	1757378	-	thiosulfate sulfurtransferase	identified by match to protein family HMM PF00581	gene	gene1739	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1749
trd_1750	trd_1750		trd_1750	1757503	1758234	-	putative periplasmic immunogenic protein	identified by match to protein family HMM PF04402	gene	gene1740	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1750
trd_1751	trd_1751		trd_1751	1758300	1758971	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1741	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1751
trd_1752	trd_1752		trd_1752	1758981	1759604	-	RNA polymerase sigma-H factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene1742	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1752
trd_1753	trd_1753		trd_1753	1759722	1759967	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1743	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1753
trd_1754	trd_1754		trd_1754	1760115	1760855	+	putative two-component system response regulator	identified by match to protein family HMM PF00196	gene	gene1744	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1754
trd_1755	trd_1755		trd_1755	1760861	1761256	-	Septum formation initiator family	identified by match to protein family HMM PF04977	gene	gene1745	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1755
trd_1756	trd_1756		trd_1756	1761260	1762729	-	glutamyl-tRNA(Gln) amidotransferase subunit A	identified by match to protein family HMM PF01425%3B match to protein family HMM TIGR00132	gene	gene1746	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1756
trd_1757	trd_1757	gatC	gatC	1762739	1763032	-	glutamyl-tRNA(Gln) amidotransferase%2C C subunit	identified by match to protein family HMM PF02686%3B match to protein family HMM TIGR00135	gene	gene1747	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1757
trd_1758	trd_1758		trd_1758	1763077	1764435	-	beta-glucosidase A	identified by match to protein family HMM PF00232	gene	gene1748	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1758
trd_1759	trd_1759		trd_1759	1764490	1766178	-	DNA polymerase III subunit gamma/tau	identified by match to protein family HMM PF00004%3B match to protein family HMM PF06144%3B match to protein family HMM TIGR02397	gene	gene1749	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1759
trd_1760	trd_1760		trd_1760	1766282	1767166	+	conserved hypothetical protein TIGR00096	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096	gene	gene1750	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1760
trd_1761	trd_1761		trd_1761	1767144	1768382	+	L-carnitine dehydratase/bile acid-inducible protein F	identified by match to protein family HMM PF02515	gene	gene1751	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1761
trd_1762	trd_1762	fad	fad	1768379	1769164	+	enoyl-CoA hydratase	identified by match to protein family HMM PF00378	gene	gene1752	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1762
trd_1763	trd_1763		trd_1763	1769496	1770482	-	hypothetical conserved protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00188	gene	gene1753	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1763
trd_1764	trd_1764		trd_1764	1770733	1770852	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1754	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1764
trd_1765	trd_1765		trd_1765	1770965	1771081	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1755	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1765
trd_1766	trd_1766		trd_1766	1771149	1771319	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1756	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1766
trd_1767	trd_1767		trd_1767	1771342	1771902	-	oxidoreductase	identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358	gene	gene1757	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1767
trd_1768	trd_1768		trd_1768	1772124	1772783	+	putative Uncharacterized BCR%2C YitT family	identified by match to protein family HMM PF02588	gene	gene1758	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1768
trd_1769	trd_1769		trd_1769	1772770	1773159	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1759	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1769
trd_1770	trd_1770		trd_1770	1773222	1773671	-	nucleoside diphosphate kinase	identified by match to protein family HMM PF00334	gene	gene1760	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1770
trd_1771	trd_1771		trd_1771	1773746	1775281	-	Tetratricopeptide repeat family		gene	gene1761	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1771
trd_1772	trd_1772		trd_1772	1775274	1775438	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1762	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1772
trd_1773	trd_1773		trd_1773	1776387	1777526	-	sarcosine oxidase	identified by match to protein family HMM PF01266	gene	gene1764	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1773
trd_1774	trd_1774		trd_1774	1775410	1776393	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1763	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1774
trd_1775	trd_1775		trd_1775	1777630	1778034	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1765	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1775
trd_1776	trd_1776		trd_1776	1778077	1780617	+	metal-transporting P-type ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525	gene	gene1766	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1776
trd_1777	trd_1777		trd_1777	1781835	1784072	-	phosphoglycerate dehydrogenase SerA	identified by match to protein family HMM PF00389%3B match to protein family HMM PF01842%3B match to protein family HMM PF02826%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR01327	gene	gene1768	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1777
trd_1778	trd_1778		trd_1778	1780636	1781853	+	putative mannosyl transferase	identified by match to protein family HMM PF00534%3B match to protein family HMM TIGR02149	gene	gene1767	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1778
trd_1779	trd_1779		trd_1779	1784093	1784266	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1769	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1779
trd_1780	trd_1780		trd_1780	1784633	1784992	+	nadh ubiquinone oxidoreductase chain a	identified by match to protein family HMM PF00507	gene	gene1770	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1780
trd_1781	trd_1781	nuoB	nuoB	1784983	1785540	+	nadh dehydrogenase i%2C b subunit	identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR01957	gene	gene1771	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1781
trd_1782	trd_1782		trd_1782	1785553	1786167	+	nadh-quinone oxidoreductase chain c	identified by match to protein family HMM PF00329%3B match to protein family HMM TIGR01961	gene	gene1772	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1782
trd_1783	trd_1783	nuoD	nuoD	1786164	1787393	+	NADH dehydrogenase I%2C D subunit	identified by match to protein family HMM PF00346%3B match to protein family HMM TIGR01962	gene	gene1773	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1783
trd_1784	trd_1784		trd_1784	1787424	1788449	+	nadh-quinone oxidoreductase chain h	identified by match to protein family HMM PF00146	gene	gene1774	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1784
trd_1785	trd_1785		trd_1785	1788472	1789197	+	nadh dehydrogenase i chain j	identified by match to protein family HMM PF00499	gene	gene1775	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1785
trd_1786	trd_1786		trd_1786	1789194	1789502	+	nadh dehydrogenase subunit 4l	identified by match to protein family HMM PF00420	gene	gene1776	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1786
trd_1787	trd_1787		trd_1787	1789515	1791416	+	nadh dehydrogenase i chain 5	identified by match to protein family HMM PF00361%3B match to protein family HMM PF00662%3B match to protein family HMM TIGR01974	gene	gene1777	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1787
trd_1788	trd_1788		trd_1788	1791438	1793012	+	nadh-quinone oxidoreductase chain m	identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01972	gene	gene1778	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1788
trd_1789	trd_1789		trd_1789	1793027	1794514	+	nadh dehydrogenase chain n	identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01770	gene	gene1779	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1789
trd_1790	trd_1790		trd_1790	1794540	1795469	+	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene1780	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1790
trd_1791	trd_1791		trd_1791	1795515	1796708	+	conserved hypothetical protein		gene	gene1781	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1791
trd_1792	trd_1792		trd_1792	1796743	1797945	-	class I aminotransferase protein	identified by match to protein family HMM PF00155	gene	gene1782	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1792
trd_1793	trd_1793		trd_1793	1797942	1798697	-	alanyl-tRNA synthetase	identified by match to protein family HMM PF07973	gene	gene1783	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1793
trd_1794	trd_1794		trd_1794	1798845	1799519	-	putative Phosphoribosyl transferase domain	identified by match to protein family HMM PF00156	gene	gene1784	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1794
trd_1795	trd_1795		trd_1795	1799623	1801284	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521	gene	gene1785	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1795
trd_1796	trd_1796		trd_1796	1801298	1801651	-	putative cytochrome oxidase assembly protein		gene	gene1786	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1796
trd_1797	trd_1797		trd_1797	1801676	1802308	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1787	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1797
trd_1798	trd_1798		trd_1798	1802287	1802967	+	exsB protein	identified by match to protein family HMM PF06508%3B match to protein family HMM TIGR00364	gene	gene1788	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1798
trd_1799	trd_1799	ychF	ychF	1803015	1804118	+	GTP-binding protein YchF	identified by match to protein family HMM PF01926%3B match to protein family HMM PF02824%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092	gene	gene1789	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1799
trd_1800	trd_1800		trd_1800	1806581	1806739	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1791	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1800
trd_1801	trd_1801		trd_1801	1804139	1806601	+	putative membrane protein		gene	gene1790	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1801
trd_1802	trd_1802		trd_1802	1806792	1807439	-	Class II Aldolase and Adducin N-terminal domain protein	identified by match to protein family HMM PF00596	gene	gene1792	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1802
trd_1803	trd_1803		trd_1803	1807462	1808337	-	succinyl-CoA synthetase alpha chain	identified by match to protein family HMM PF00549%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01019	gene	gene1793	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1803
trd_1804	trd_1804		trd_1804	1808352	1809524	-	succinyl-CoA synthase%2C beta subunit	identified by match to protein family HMM PF00549%3B match to protein family HMM PF08442%3B match to protein family HMM TIGR01016	gene	gene1794	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1804
trd_1805	trd_1805		trd_1805	1809561	1809698	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1795	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1805
trd_1806	trd_1806		trd_1806	1809911	1811593	+	3-ketosteroid dehydrogenase	identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266	gene	gene1796	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1806
trd_1807	trd_1807		trd_1807	1811804	1812841	+	TPP-dependent acetoin dehydrogenase alpha-subunit	identified by match to protein family HMM PF00676	gene	gene1797	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1807
trd_1808	trd_1808		trd_1808	1812838	1813857	+	acetoin:2%2C6-dichlorophenolindophenol oxidoreductase beta subunit	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene1798	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1808
trd_1809	trd_1809		trd_1809	1813929	1814804	-	universal stress protein	identified by match to protein family HMM PF00582	gene	gene1799	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1809
trd_1810	trd_1810		trd_1810	1814979	1816040	+	putative oxidoreductase protein	identified by match to protein family HMM PF02615	gene	gene1800	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1810
trd_1811	trd_1811		trd_1811	1816098	1817093	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1801	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1811
trd_1812	trd_1812		trd_1812	1817158	1817661	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1802	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1812
trd_1813	trd_1813		trd_1813	1817675	1820845	-	putative sensory box protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF08447%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1803	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1813
trd_1814	trd_1814		trd_1814	1820999	1821151	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1804	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1814
trd_1815	trd_1815		trd_1815	1821115	1824483	-	B12-dependent ribonucleoside diphosphate reductase	identified by match to protein family HMM PF02867%3B match to protein family HMM PF08471%3B match to protein family HMM TIGR02504	gene	gene1805	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1815
trd_1816	trd_1816		trd_1816	1824860	1825525	-	response regulator uvrY	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196%3B match to protein family HMM PF08281	gene	gene1806	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1816
trd_1817	trd_1817		trd_1817	1825522	1826589	-	probable transmembrane two component system sensor kinase transcription regulator protein	identified by match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730	gene	gene1807	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1817
trd_1818	trd_1818	ffh	ffh	1826614	1828080	-	signal recognition particle protein	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959	gene	gene1808	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1818
trd_1819	trd_1819	ftsY	ftsY	1828083	1829045	-	signal recognition particle-docking protein FtsY	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064	gene	gene1809	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1819
trd_1820	trd_1820		trd_1820	1829229	1830014	+	DNA repair protein radC homolog	identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608	gene	gene1810	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1820
trd_1821	trd_1821		trd_1821	1830117	1830530	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1811	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1821
trd_1822	trd_1822		trd_1822	1830537	1832645	-	N-acetylmuramoyl-L-alanine amidase domain protein	identified by match to protein family HMM PF01510	gene	gene1812	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1822
trd_1823	trd_1823		trd_1823	1832767	1833630	+	putative membrane protein		gene	gene1813	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1823
trd_1824	trd_1824		trd_1824	1833647	1835644	+	Glycosyl hydrolase%2C family 15	identified by match to protein family HMM PF00723	gene	gene1814	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1824
trd_1825	trd_1825		trd_1825	1835659	1837164	-	aldehyde dehydrogenase aldh	identified by match to protein family HMM PF00171	gene	gene1815	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1825
trd_1826	trd_1826		trd_1826	1837252	1837527	-	YCII-related domain superfamily	identified by match to protein family HMM PF03795	gene	gene1816	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1826
trd_1827	trd_1827	phoU	phoU	1837543	1838259	-	phosphate transport system regulatory protein PhoU	identified by match to protein family HMM PF01895%3B match to protein family HMM TIGR02135	gene	gene1817	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1827
trd_1828	trd_1828	pstB	pstB	1838368	1839222	-	phosphate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972	gene	gene1818	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1828
trd_1829	trd_1829	pstB	pstB	1839243	1840055	-	phosphate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972	gene	gene1819	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1829
trd_1830	trd_1830	pstA	pstA	1840069	1840965	-	phosphate ABC transporter%2C permease protein PstA	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974	gene	gene1820	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1830
trd_1831	trd_1831	pstC	pstC	1840962	1841936	-	phosphate ABC transporter%2C permease protein PstC	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02138	gene	gene1821	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1831
trd_1832	trd_1832	pstS	pstS	1842027	1843193	-	phosphate ABC transporter%2C periplasmic phosphate-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR02136	gene	gene1822	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1832
trd_1833	trd_1833		trd_1833	1843196	1843957	-	phosphate regulatory protein	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1823	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1833
trd_1834	trd_1834		trd_1834	1844019	1844393	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1824	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1834
trd_1835	trd_1835		trd_1835	1844518	1844784	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1825	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1835
trd_1836	trd_1836		trd_1836	1844895	1845494	-	n-acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene1826	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1836
trd_1837	trd_1837		trd_1837	1845586	1846323	+	Protein of unknown function superfamily	identified by match to protein family HMM PF01904	gene	gene1827	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1837
trd_1838	trd_1838		trd_1838	1846343	1847803	-	Type I phosphodiesterase / nucleotide pyrophosphatase superfamily	identified by match to protein family HMM PF01663	gene	gene1828	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1838
trd_1839	trd_1839		trd_1839	1847821	1849521	-	oligopeptide ABC transpoter oligopeptide-binding protein	identified by match to protein family HMM PF00496	gene	gene1829	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1839
trd_1840	trd_1840		trd_1840	1849639	1850544	-	dipeptide transport system permease protein dppC	identified by match to protein family HMM PF00528	gene	gene1830	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1840
trd_1841	trd_1841		trd_1841	1850548	1851468	-	putative transport system permease protein	identified by match to protein family HMM PF00528	gene	gene1831	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1841
trd_1842	trd_1842		trd_1842	1851599	1852144	+	aut protein	identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125	gene	gene1832	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1842
trd_1843	trd_1843	mviN	mviN	1852337	1853971	+	integral membrane protein MviN	identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695	gene	gene1833	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1843
trd_1844	trd_1844		trd_1844	1853968	1854099	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1834	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1844
trd_1845	trd_1845		trd_1845	1854099	1855397	+	cytosine deaminase	identified by match to protein family HMM PF07969	gene	gene1835	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1845
trd_1846	trd_1846		trd_1846	1855476	1856105	+	Protein of unknown function (DUF820) family	identified by match to protein family HMM PF05685	gene	gene1836	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1846
trd_1847	trd_1847		trd_1847	1856205	1858532	-	carbon monoxide dehydrogenase large chain	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene1837	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1847
trd_1848	trd_1848		trd_1848	1858691	1861150	-	carbon monoxide dehydrogenase large chain	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene1838	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1848
trd_1849	trd_1849		trd_1849	1861147	1861947	-	glycosyl transferase%2C family 2:Glycosyl transferase%2C group 1	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1839	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1849
trd_1850	trd_1850		trd_1850	1862028	1862915	+	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene1840	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1850
trd_1851	trd_1851		trd_1851	1862922	1863983	-	putative peptidase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF05343	gene	gene1841	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1851
trd_1852	trd_1852		trd_1852	1863994	1864995	-	glyoxylate reductase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene1842	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1852
trd_1853	trd_1853		trd_1853	1865350	1866486	-	putative hydantoinase	identified by match to protein family HMM PF06032	gene	gene1844	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1853
trd_1854	trd_1854		trd_1854	1865112	1865366	+	putative YGGT family	identified by match to protein family HMM PF02325	gene	gene1843	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1854
trd_1855	trd_1855		trd_1855	1866491	1868035	-	hydantoinase	identified by match to protein family HMM PF01968%3B match to protein family HMM PF05378	gene	gene1845	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1855
trd_1856	trd_1856		trd_1856	1867971	1868615	-	putative membrane protein		gene	gene1846	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1856
trd_1857	trd_1857		trd_1857	1868693	1868923	+	Bacterial protein of unknown function (DUF951)	identified by match to protein family HMM PF06107	gene	gene1847	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1857
trd_1858	trd_1858		trd_1858	1870207	1870527	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1849	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1858
trd_1859	trd_1859		trd_1859	1868916	1870232	+	transporter%2C major facilitator family	identified by match to protein family HMM PF07690	gene	gene1848	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1859
trd_1860	trd_1860		trd_1860	1870562	1871455	-	inner membrane ABC transporter permease protein yddQ	identified by match to protein family HMM PF00528	gene	gene1850	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1860
trd_1861	trd_1861		trd_1861	1871467	1872483	-	dipeptide transport system permease protein dppB	identified by match to protein family HMM PF00528	gene	gene1851	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1861
trd_1862	trd_1862		trd_1862	1872520	1874334	-	putative dipeptide ABC transporter	identified by match to protein family HMM PF00496%3B match to protein family HMM TIGR01409	gene	gene1852	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1862
trd_1863	trd_1863	hypF	hypF	1874536	1876812	-	[NiFe] hydrogenase maturation protein HypF	identified by match to protein family HMM PF00708%3B match to protein family HMM PF01300%3B match to protein family HMM PF07503%3B match to protein family HMM TIGR00143	gene	gene1853	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1863
trd_1864	trd_1864		trd_1864	1876796	1877023	-	glutaredoxin 3	identified by match to protein family HMM PF00462	gene	gene1854	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1864
trd_1865	trd_1865		trd_1865	1877010	1878197	-	phosphoheptose isomerase		gene	gene1855	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1865
trd_1866	trd_1866	hypE	hypE	1878225	1879265	-	hydrogenase expression/formation protein HypE	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR02124	gene	gene1856	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1866
trd_1867	trd_1867	hypD	hypD	1879268	1880383	-	hydrogenase expression/formation protein HypD	identified by match to protein family HMM PF01924%3B match to protein family HMM TIGR00075	gene	gene1857	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1867
trd_1868	trd_1868		trd_1868	1880370	1880633	-	hydrogenase maturation factor		gene	gene1858	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1868
trd_1869	trd_1869	hypC	hypC	1880620	1880895	-	hydrogenase assembly chaperone HypC/HupF	identified by match to protein family HMM PF01455%3B match to protein family HMM TIGR00074	gene	gene1859	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1869
trd_1870	trd_1870	hypB	hypB	1880864	1881586	-	hydrogenase accessory protein HypB	identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00073	gene	gene1860	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1870
trd_1871	trd_1871		trd_1871	1881579	1881974	-	probable hydrogenase nickel incorporation protein hypA	identified by match to protein family HMM PF01155	gene	gene1861	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1871
trd_1872	trd_1872		trd_1872	1881990	1882229	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1862	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1872
trd_1873	trd_1873		trd_1873	1882379	1882897	-	F420-nonreducing hydrogenase	identified by match to protein family HMM PF01750%3B match to protein family HMM TIGR00072	gene	gene1863	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1873
trd_1874	trd_1874		trd_1874	1882882	1884183	-	conserved hypothetical protein		gene	gene1864	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1874
trd_1875	trd_1875		trd_1875	1884180	1884821	-	conserved hypothetical protein		gene	gene1865	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1875
trd_1876	trd_1876		trd_1876	1884827	1885456	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1866	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1876
trd_1877	trd_1877		trd_1877	1885556	1887322	-	nickel-dependent hydrogenase%2C large subunit	identified by match to protein family HMM PF00374	gene	gene1867	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1877
trd_1878	trd_1878		trd_1878	1887363	1888403	-	nickel-dependent hydrogenase%2C small subunit	identified by match to protein family HMM PF01058	gene	gene1868	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1878
trd_1879	trd_1879		trd_1879	1889115	1890644	+	metal-dependent phosphohydrolase%2C HD region	identified by match to protein family HMM PF00013%3B match to protein family HMM PF01966%3B match to protein family HMM PF08668%3B match to protein family HMM TIGR00277%3B match to protein family HMM TIGR03319	gene	gene1869	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1879
trd_1880	trd_1880		trd_1880	1891052	1891399	+	conserved hypothetical protein		gene	gene1870	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1880
trd_1881	trd_1881		trd_1881	1891461	1892042	-	FHA domain protein	identified by match to protein family HMM PF00498	gene	gene1871	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1881
trd_1882	trd_1882		trd_1882	1892039	1892650	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1872	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1882
trd_1883	trd_1883		trd_1883	1892658	1893857	-	putative multidrug-efflux transporter	identified by match to protein family HMM PF07690	gene	gene1873	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1883
trd_1884	trd_1884		trd_1884	1894058	1895095	+	L-allo-threonine aldolase	identified by match to protein family HMM PF01212	gene	gene1874	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1884
trd_1885	trd_1885		trd_1885	1895105	1895578	-	putative DinB family protein	identified by match to protein family HMM PF05163	gene	gene1875	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1885
trd_1886	trd_1886		trd_1886	1895566	1895682	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1876	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1886
trd_1887	trd_1887		trd_1887	1895679	1897286	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1877	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1887
trd_1888	trd_1888		trd_1888	1897894	1898562	-	hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509	gene	gene1879	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1888
trd_1889	trd_1889		trd_1889	1897616	1897897	+	putative pterin-4-alpha-carbinolamine dehydratase	identified by match to protein family HMM PF01329	gene	gene1878	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1889
trd_1890	trd_1890	gltX	gltX	1898652	1900172	+	glutamyl-tRNA synthetase	identified by match to protein family HMM PF00749%3B match to protein family HMM TIGR00464	gene	gene1880	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1890
trd_1891	trd_1891		trd_1891	1900227	1900427	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1881	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1891
trd_1892	trd_1892		trd_1892	1902096	1903370	-	putative glycosyltransferase	identified by match to protein family HMM PF00534	gene	gene1883	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1892
trd_1893	trd_1893		trd_1893	1900967	1902124	+	Luciferase-like monooxygenase superfamily	identified by match to protein family HMM PF00296	gene	gene1882	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1893
trd_1894	trd_1894	thrC	thrC	1903469	1904704	+	threonine synthase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260	gene	gene1884	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1894
trd_1895	trd_1895	mutM	mutM	1904743	1905612	-	formamidopyrimidine-DNA glycosylase	identified by match to protein family HMM PF01149%3B match to protein family HMM PF06827%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577	gene	gene1885	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1895
trd_1896	trd_1896		trd_1896	1905643	1905990	+	Hit family protein	identified by match to protein family HMM PF01230	gene	gene1886	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1896
trd_1897	trd_1897		trd_1897	1906071	1909175	-	BNR/Asp-box repeat domain protein	this gene contains a nucleotide ambiguity which may be the result of a sequencing error%3B identified by match to protein family HMM PF02012	gene	gene1887	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1897
trd_1898	trd_1898		trd_1898	1909164	1909292	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1888	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1898
trd_1899	trd_1899		trd_1899	1909524	1909712	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1889	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1899
trd_1900	trd_1900		trd_1900	1909722	1910222	+	conserved hypothetical protein		gene	gene1890	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1900
trd_1901	trd_1901		trd_1901	1910182	1910511	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1891	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1901
trd_1902	trd_1902		trd_1902	1911037	1911792	-	conserved hypothetical protein	identified by match to protein family HMM PF02585	gene	gene1892	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1902
trd_1903	trd_1903		trd_1903	1911892	1912116	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1893	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1903
trd_1904	trd_1904		trd_1904	1912113	1912367	+	mttA/Hcf106 family protein	identified by match to protein family HMM PF02416	gene	gene1894	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1904
trd_1905	trd_1905		trd_1905	1912751	1914445	+	Trypsin domain protein	identified by match to protein family HMM PF00089	gene	gene1895	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1905
trd_1906	trd_1906		trd_1906	1914454	1915164	-	putative oxidoreductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene1896	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1906
trd_1907	trd_1907		trd_1907	1915220	1917913	-	developmental regulator MorA	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM PF08447%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1897	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1907
trd_1908	trd_1908		trd_1908	1918082	1919668	-	putative membrane protein		gene	gene1898	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1908
trd_1909	trd_1909	cysS	cysS	1920045	1921268	-	cysteinyl-tRNA synthetase	identified by match to protein family HMM PF01406%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00435	gene	gene1899	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1909
trd_1910	trd_1910		trd_1910	1921344	1921481	+	peroxiredoxin%2C bacterioferritin comigratory protein homolog	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1900	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1910
trd_1911	trd_1911		trd_1911	1921800	1923206	-	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene1902	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1911
trd_1912	trd_1912		trd_1912	1921500	1921817	+	bacterioferritin comigratory protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1901	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1912
trd_1913	trd_1913		trd_1913	1924166	1924633	-	hypothetical protein		gene	gene1904	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1913
trd_1914	trd_1914		trd_1914	1923384	1924199	+	putative oxidoreductase		gene	gene1903	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1914
trd_1915	trd_1915		trd_1915	1924657	1925214	-	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene1905	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1915
trd_1916	trd_1916		trd_1916	1925235	1927016	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1906	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1916
trd_1917	trd_1917		trd_1917	1927062	1927961	-	putative haloacid dehalogenase-like hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene1907	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1917
trd_1918	trd_1918		trd_1918	1928261	1929076	+	putative fumarylacetoacetate hydrolase family protein	identified by match to protein family HMM PF01557	gene	gene1908	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1918
trd_1919	trd_1919		trd_1919	1929073	1929423	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1909	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1919
trd_1920	trd_1920		trd_1920	1929787	1931148	-	conserved hypothetical protein		gene	gene1910	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1920
trd_1921	trd_1921		trd_1921	1931185	1931403	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1911	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1921
trd_1922	trd_1922		trd_1922	1931740	1933572	+	putative cadherin domain/calx-beta domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts	gene	gene1912	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1922
trd_1923	trd_1923		trd_1923	1934040	1934462	-	methylmalonyl-CoA epimerase	identified by match to protein family HMM PF00903	gene	gene1913	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1923
trd_1924	trd_1924		trd_1924	1934545	1934835	-	cell division inhibitor MinE	identified by match to protein family HMM PF03776	gene	gene1914	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1924
trd_1925	trd_1925	minD	minD	1934855	1935679	-	septum site-determining protein MinD	identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR01968	gene	gene1915	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1925
trd_1926	trd_1926	minC	minC	1935709	1936416	-	septum site-determining protein MinC	identified by match to protein family HMM PF03775%3B match to protein family HMM TIGR01222	gene	gene1916	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1926
trd_1927	trd_1927		trd_1927	1936420	1938696	-	penicillin-binding protein	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM TIGR03423	gene	gene1917	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1927
trd_1928	trd_1928		trd_1928	1938686	1939174	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1918	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1928
trd_1929	trd_1929		trd_1929	1939223	1939978	-	probable phosphoesterase	identified by match to protein family HMM PF00149	gene	gene1919	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1929
trd_1930	trd_1930		trd_1930	1940094	1942091	+	possible glycanase or glycogenase with amylase domain	identified by match to protein family HMM PF00128	gene	gene1920	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1930
trd_1931	trd_1931		trd_1931	1942101	1945472	+	alpha amylase%2C catalytic subdomain	identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02456%3B match to protein family HMM TIGR02457	gene	gene1921	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1931
trd_1932	trd_1932	treY	treY	1945469	1947463	+	putative fusion of 4-alpha glucanotransferase and maltooligosyltrehalose synthase	identified by match to protein family HMM PF02446	gene	gene1922	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1932
trd_1933	trd_1933	glgB	glgB	1947460	1949403	+	1%2C4-alpha-glucan branching enzyme	identified by match to protein family HMM PF00128%3B match to protein family HMM PF02806%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR01515	gene	gene1923	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1933
trd_1934	trd_1934		trd_1934	1951831	1952595	-	putative cobyric acid synthase	identified by match to protein family HMM PF07685	gene	gene1925	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1934
trd_1935	trd_1935		trd_1935	1949400	1951844	+	glycosyl hydrolase%2C family 57	identified by match to protein family HMM PF03065	gene	gene1924	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1935
trd_1936	trd_1936		trd_1936	1952607	1953986	-	hypothetical tripeptide synthase involved in murein formation	identified by match to protein family HMM PF08245%3B match to protein family HMM PF08353	gene	gene1926	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1936
trd_1937	trd_1937		trd_1937	1953996	1954814	-	rod shape-determining protein	identified by match to protein family HMM PF04085	gene	gene1927	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1937
trd_1938	trd_1938		trd_1938	1954827	1955903	-	Rod shape-determining protein mreB	identified by match to protein family HMM PF06723%3B match to protein family HMM TIGR00904	gene	gene1928	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1938
trd_1939	trd_1939		trd_1939	1955929	1957557	-	lipoprotein precursor	identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551	gene	gene1929	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1939
trd_1940	trd_1940		trd_1940	1957789	1958787	+	conserved hypothetical protein TIGR00147	identified by match to protein family HMM PF00781%3B match to protein family HMM TIGR00147	gene	gene1930	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1940
trd_1941	trd_1941		trd_1941	1958820	1960034	+	hypothetical protein		gene	gene1931	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1941
trd_1942	trd_1942		trd_1942	1960099	1961340	-	probable alcohol dehydrogenase	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene1932	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1942
trd_1943	trd_1943		trd_1943	1961351	1962979	-	N-acyl-D-aspartate deacylase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07908%3B match to protein family HMM PF07969	gene	gene1933	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1943
trd_1944	trd_1944		trd_1944	1963055	1963804	-	domain of unknown function protein	identified by match to protein family HMM PF03737	gene	gene1934	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1944
trd_1945	trd_1945		trd_1945	1963834	1965027	-	Mandelate racemase / muconate lactonizing enzyme%2C N-terminal domain protein	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene1935	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1945
trd_1946	trd_1946		trd_1946	1965158	1966039	-	Senescence marker protein-30 (SMP-30)	identified by match to protein family HMM PF08450	gene	gene1936	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1946
trd_1947	trd_1947		trd_1947	1966135	1966383	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1937	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1947
trd_1948	trd_1948		trd_1948	1966385	1967101	+	putative oxidoreductase protein	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene1938	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1948
trd_1949	trd_1949		trd_1949	1967256	1967393	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1939	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1949
trd_1950	trd_1950		trd_1950	1968161	1969000	-	maltose ABC transporter%2C permease	identified by match to protein family HMM PF00528	gene	gene1940	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1950
trd_1951	trd_1951		trd_1951	1969011	1970015	-	oligopeptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1941	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1951
trd_1952	trd_1952		trd_1952	1970121	1971965	-	Bacterial extracellular solute-binding proteins%2C family 5	identified by match to protein family HMM PF00496	gene	gene1942	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1952
trd_1954	trd_1954		trd_1954	1971853	1973100	+	putative oligopeptide transport atp-binding abc transporter protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene1943	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1954
trd_1955	trd_1955		trd_1955	1973097	1974140	+	oligopeptide transport ATP-binding protein appF	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene1944	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1955
trd_1956	trd_1956		trd_1956	1974154	1975326	-	2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene1945	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1956
trd_1957	trd_1957		trd_1957	1975415	1976677	+	mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muconate lactonizing enzyme	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene1946	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1957
trd_1958	trd_1958	dgoA	dgoA	1977016	1978215	-	probable galactonate dehydratase protein	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene1947	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1958
trd_1959	trd_1959		trd_1959	1978315	1979712	-	putative lipoprotein		gene	gene1948	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1959
trd_1960	trd_1960		trd_1960	1979776	1980891	-	ErfK/YbiS/YcfS/YnhG family protein	identified by match to protein family HMM PF03734	gene	gene1949	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1960
trd_1961	trd_1961		trd_1961	1981247	1981612	-	putative peptidase	identified by match to protein family HMM PF01476	gene	gene1950	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1961
trd_1962	trd_1962		trd_1962	1981615	1981857	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1951	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1962
trd_1963	trd_1963		trd_1963	1981854	1982735	-	ComE operon protein 3	identified by match to protein family HMM PF00753	gene	gene1952	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1963
trd_1964	trd_1964	pgsA	pgsA	1982741	1983322	-	CDP-diacylglycerol--glycerol-3-phosphate 3 -phosphatidyltransferase (pgsA)	identified by match to protein family HMM PF01066	gene	gene1953	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1964
trd_1965	trd_1965		trd_1965	1983329	1984516	-	glycosyl transferase	identified by match to protein family HMM PF00534	gene	gene1954	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1965
trd_1966	trd_1966		trd_1966	1984550	1984714	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1955	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1966
trd_1967	trd_1967		trd_1967	1984721	1985227	-	PRC-barrel domain protein	identified by match to protein family HMM PF05239	gene	gene1956	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1967
trd_1968	trd_1968		trd_1968	1985366	1987894	+	putative penicillin-binding protein 1A	identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912	gene	gene1957	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1968
trd_1969	trd_1969		trd_1969	1987967	1988080	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1958	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1969
trd_1970	trd_1970		trd_1970	1988031	1988228	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1959	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1970
trd_1971	trd_1971		trd_1971	1988306	1989451	+	putative amino acid oxidase	identified by match to protein family HMM PF01266	gene	gene1960	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1971
trd_1972	trd_1972		trd_1972	1989527	1990531	-	Polysulphide reductase%2C NrfD superfamily	identified by match to protein family HMM PF03916	gene	gene1961	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1972
trd_1973	trd_1973		trd_1973	1990524	1991372	-	putative [Ni/Fe] hydrogenase%2C iron-sulfur cluster-binding subunit	identified by match to protein family HMM PF00037	gene	gene1962	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1973
trd_1974	trd_1974		trd_1974	1991369	1994551	-	formate dehydrogenase%2C nitrate-inducible%2C major subunit (selenocysteine-containing)	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01553	gene	gene1963	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1974
trd_1975	trd_1975		trd_1975	1994455	1995252	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1964	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1975
trd_1976	trd_1976		trd_1976	1995225	1995650	-	UspA	identified by match to protein family HMM PF00582	gene	gene1965	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1976
trd_1977	trd_1977	kefB	kefB	1995654	1996862	-	Kef-type K+ transport systems%2C membrane components	identified by match to protein family HMM PF00999	gene	gene1966	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1977
trd_1978	trd_1978		trd_1978	1997198	1997593	+	putative HEPN domain	identified by match to protein family HMM PF05168	gene	gene1967	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1978
trd_1979	trd_1979		trd_1979	1997574	1997900	+	putative Nucleotidyltransferase domain	identified by match to protein family HMM PF01909	gene	gene1968	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1979
trd_1980	trd_1980		trd_1980	1997931	1999757	-	putative endonuclease/exonuclease/phosphatase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF03372	gene	gene1969	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1980
trd_1981	trd_1981		trd_1981	2000576	2001403	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1970	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1981
trd_1982	trd_1982		trd_1982	2001433	2002299	+	mechanosensitive ion channel	identified by match to protein family HMM PF00924	gene	gene1971	http://www.ncbi.nlm.nih.gov/gene/?term=trd_1982
trd_A0001	trd_A0001		trd_A0001	437	2458	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1972	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0001
trd_A0002	trd_A0002		trd_A0002	2789	4261	-	probable methylmalonate-semialdehyde dehydrogenase [acylating] (mmsdh)	identified by match to protein family HMM PF00171	gene	gene1974	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0002
trd_A0003	trd_A0003		trd_A0003	2517	2813	+	expressed protein		gene	gene1973	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0003
trd_A0004	trd_A0004		trd_A0004	4258	5721	-	protein of unknown function	identified by match to protein family HMM PF01594	gene	gene1975	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0004
trd_A0005	trd_A0005		trd_A0005	5796	5921	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1976	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0005
trd_A0006	trd_A0006		trd_A0006	5959	7323	-	major facilitator superfamily MFS_1	identified by match to protein family HMM PF07690	gene	gene1977	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0006
trd_A0007	trd_A0007	pdxH	pdxH	7559	8212	+	pyridoxamine 5'-phosphate oxidase	identified by match to protein family HMM PF01243%3B match to protein family HMM TIGR00558	gene	gene1978	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0007
trd_A0008	trd_A0008		trd_A0008	8222	8641	+	protein hit	identified by match to protein family HMM PF01230	gene	gene1979	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0008
trd_A0009	trd_A0009		trd_A0009	9038	9607	+	isochorismatase (2%2C3 dihydro-2%2C3 dihydroxybenzoatesynthase) (Superoxide-inducible protein 1) (SOI1)	identified by match to protein family HMM PF00857	gene	gene1980	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0009
trd_A0010	trd_A0010		trd_A0010	10006	10329	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1981	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0010
trd_A0011	trd_A0011		trd_A0011	10328	11623	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene1982	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0011
trd_A0012	trd_A0012		trd_A0012	11747	12526	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene1983	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0012
trd_A0013	trd_A0013		trd_A0013	12483	12602	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1984	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0013
trd_A0014	trd_A0014		trd_A0014	12942	13826	-	3-hydroxyisobutyrate dehydrogenase family protein	identified by match to protein family HMM PF03446	gene	gene1985	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0014
trd_A0015	trd_A0015		trd_A0015	13981	14613	-	NADH dehydrogenase (h(2)o(2)-forming nadh oxidase)(nadh:oxygen oxidoreductase)	identified by match to protein family HMM PF00881	gene	gene1986	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0015
trd_A0016	trd_A0016		trd_A0016	14671	14940	-	LytR/CspA/Psr family protein		gene	gene1987	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0016
trd_A0017	trd_A0017		trd_A0017	14959	16476	-	putative Mg chelatase homolog	identified by match to protein family HMM PF01078%3B match to protein family HMM TIGR00368	gene	gene1988	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0017
trd_A0018	trd_A0018		trd_A0018	16516	16890	-	DNA polymerase%2C beta domain protein region	identified by match to protein family HMM PF01909	gene	gene1989	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0018
trd_A0019	trd_A0019		trd_A0019	16856	17257	-	hepn domain protein	identified by match to protein family HMM PF05168	gene	gene1990	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0019
trd_A0020	trd_A0020		trd_A0020	17660	18109	+	heat shock protein%2C class I	identified by match to protein family HMM PF00011	gene	gene1991	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0020
trd_A0021	trd_A0021		trd_A0021	18141	18812	+	osmotically inducible protein Y domain protein	identified by match to protein family HMM PF04972	gene	gene1992	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0021
trd_A0022	trd_A0022		trd_A0022	19223	19426	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1993	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0022
trd_A0023	trd_A0023		trd_A0023	19470	20807	+	basic membrane protein%2C putative	identified by match to protein family HMM PF02608	gene	gene1994	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0023
trd_A0024	trd_A0024		trd_A0024	20921	22456	+	ribose ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1995	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0024
trd_A0025	trd_A0025		trd_A0025	22453	23625	+	inner-membrane translocator	identified by match to protein family HMM PF02653	gene	gene1996	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0025
trd_A0026	trd_A0026		trd_A0026	23603	24481	+	ABC-type transport system%2C permease component	identified by match to protein family HMM PF02653	gene	gene1997	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0026
trd_A0027	trd_A0027		trd_A0027	24608	25288	-	conserved hypothetical protein		gene	gene1998	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0027
trd_A0028	trd_A0028		trd_A0028	25285	25671	-	flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY)	identified by match to protein family HMM PF01052%3B match to protein family HMM TIGR02480	gene	gene1999	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0028
trd_A0029	trd_A0029		trd_A0029	25647	26651	-	flagellar motor switch protein FliM	identified by match to protein family HMM PF01052%3B match to protein family HMM PF02154	gene	gene2000	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0029
trd_A0030	trd_A0030	fliL	fliL	26662	27207	-	flagellar basal body-associated protein FliL	identified by match to protein family HMM PF03748	gene	gene2001	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0030
trd_A0031	trd_A0031		trd_A0031	27223	27936	-	chemotaxis protein MotB (Motility protein B)	identified by match to protein family HMM PF00691	gene	gene2002	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0031
trd_A0032	trd_A0032		trd_A0032	27943	28746	-	chemotaxis protein PomA	identified by match to protein family HMM PF01618	gene	gene2003	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0032
trd_A0033	trd_A0033		trd_A0033	28768	28998	-	flagellar FlbD family protein	identified by match to protein family HMM PF06289	gene	gene2004	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0033
trd_A0034	trd_A0034	fliP	fliP	29242	30057	+	flagellar biosynthetic protein FliP	identified by match to protein family HMM PF00813%3B match to protein family HMM TIGR01103	gene	gene2005	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0034
trd_A0035	trd_A0035	fliQ	fliQ	30068	30337	+	flagellar biosynthetic protein FliQ	identified by match to protein family HMM PF01313%3B match to protein family HMM TIGR01402	gene	gene2006	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0035
trd_A0036	trd_A0036	fliR	fliR	30347	31129	+	flagellar biosynthetic protein FliR	identified by match to protein family HMM PF01311%3B match to protein family HMM TIGR01400	gene	gene2007	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0036
trd_A0037	trd_A0037	flhB	flhB	31133	32224	+	flagellar biosynthetic protein FlhB	identified by match to protein family HMM PF01312%3B match to protein family HMM TIGR00328	gene	gene2008	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0037
trd_A0038	trd_A0038	flhA	flhA	32244	34319	+	flagellar biosynthesis protein FlhA	identified by match to protein family HMM PF00771%3B match to protein family HMM TIGR01398	gene	gene2009	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0038
trd_A0039	trd_A0039		trd_A0039	34323	35324	+	GTP-binding signal recognition particle SRP54%2C G-domain	identified by match to protein family HMM PF00448	gene	gene2010	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0039
trd_A0040	trd_A0040		trd_A0040	35486	35728	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2011	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0040
trd_A0041	trd_A0041		trd_A0041	35746	36534	+	RNA polymerase sigma-D factor (Sigma-28)	identified by match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02479%3B match to protein family HMM TIGR02937	gene	gene2012	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0041
trd_A0042	trd_A0042		trd_A0042	36546	36914	+	putative transmembrane sensory transduction histidine kinase for metal resistance		gene	gene2013	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0042
trd_A0043	trd_A0043		trd_A0043	36919	37620	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2014	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0043
trd_A0044	trd_A0044		trd_A0044	37617	38363	+	flagellar basal-body rod protein FlgF (Putative proximal rod protein)	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR03506	gene	gene2015	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0044
trd_A0045	trd_A0045		trd_A0045	38375	39154	+	flagellar basal-body rod protein FlgG	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR03506	gene	gene2016	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0045
trd_A0046	trd_A0046		trd_A0046	39269	39580	+	histone demethylase jarid1c (jumonji/arid domain-containing protein 1c) (protein smcx) (protein)		gene	gene2017	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0046
trd_A0047	trd_A0047		trd_A0047	39596	39991	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2018	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0047
trd_A0048	trd_A0048	flgK	flgK	40061	41467	+	flagellar hook-associated protein FlgK	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492	gene	gene2019	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0048
trd_A0049	trd_A0049	flgL	flgL	41496	42371	+	flagellar hook-associated protein 3	identified by match to protein family HMM PF00669%3B match to protein family HMM TIGR02550	gene	gene2020	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0049
trd_A0050	trd_A0050		trd_A0050	42392	42820	+	flagellar assembly factor FliW	identified by match to protein family HMM PF02623	gene	gene2021	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0050
trd_A0051	trd_A0051	csrA	csrA	42833	43072	+	carbon storage regulator	identified by match to protein family HMM PF02599%3B match to protein family HMM TIGR00202	gene	gene2022	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0051
trd_A0052	trd_A0052		trd_A0052	43122	43247	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2023	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0052
trd_A0053	trd_A0053		trd_A0053	43482	44153	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2024	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0053
trd_A0054	trd_A0054		trd_A0054	44232	44720	-	NADH pyrophosphatase	identified by match to protein family HMM PF00293	gene	gene2025	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0054
trd_A0055	trd_A0055		trd_A0055	44909	45328	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2026	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0055
trd_A0056	trd_A0056		trd_A0056	45469	46047	+	formate dehydrogenase-O%2C major subunit	identified by match to protein family HMM PF04879%3B match to protein family HMM TIGR01409	gene	gene2027	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0056
trd_A0057	trd_A0057		trd_A0057	46174	48654	+	formate dehydrogenase%2C nitrate-inducible%2C major subunit (Formate dehydrogenase-N subunit alpha) (FDH-N subunit alpha)(Anaerobic formate dehydrogenase major subunit)	identified by match to protein family HMM PF01568	gene	gene2028	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0057
trd_A0058	trd_A0058		trd_A0058	48725	49540	+	formate dehydrogenase%2C nitrate-inducible%2C iron-sulfur subunit	identified by match to protein family HMM PF00037%3B Formatedehydrogenase-N subunit beta%3B FDH-N subunit beta%3B Anaerobic formatedehydrogenase iron-sulfur subunit	gene	gene2029	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0058
trd_A0059	trd_A0059		trd_A0059	49555	50442	+	polysulphide reductase NrfD	identified by match to protein family HMM PF03916	gene	gene2030	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0059
trd_A0060	trd_A0060		trd_A0060	50444	50692	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2031	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0060
trd_A0061	trd_A0061		trd_A0061	50689	51561	+	formate dehydrogenase formation protein FdhE%2C putative		gene	gene2032	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0061
trd_A0062	trd_A0062		trd_A0062	51571	51927	+	type III secretion fhipep protein%2C putative		gene	gene2033	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0062
trd_A0063	trd_A0063		trd_A0063	52101	53624	-	permease	identified by match to protein family HMM PF03773	gene	gene2034	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0063
trd_A0064	trd_A0064		trd_A0064	53576	54016	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2035	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0064
trd_A0065	trd_A0065		trd_A0065	54260	54406	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2036	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0065
trd_A0066	trd_A0066		trd_A0066	54490	54792	-	HhH-GPD domain protein		gene	gene2037	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0066
trd_A0067	trd_A0067		trd_A0067	55305	55496	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2038	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0067
trd_A0068	trd_A0068		trd_A0068	56118	56603	-	aldehyde dehydrogenase subunit III	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene2039	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0068
trd_A0069	trd_A0069		trd_A0069	56603	58894	-	probable xanthine dehydrogenase subunit D (XDHasesubunit D)	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene2040	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0069
trd_A0070	trd_A0070		trd_A0070	59297	60991	-	PEP-utilising enzyme%2C mobile region	identified by match to protein family HMM PF00391	gene	gene2041	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0070
trd_A0071	trd_A0071		trd_A0071	61025	61321	-	antibiotic biosynthesis monooxygenase	identified by match to protein family HMM PF03992	gene	gene2042	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0071
trd_A0072	trd_A0072		trd_A0072	61352	62341	-	fumarylacetoacetate hydrolase domain-containing protein 2	identified by match to protein family HMM PF01557	gene	gene2043	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0072
trd_A0073	trd_A0073		trd_A0073	62338	63231	-	4-Hydroxybenzoyl-CoA reductase%2C FAD-binding subunit B	identified by match to protein family HMM PF00941	gene	gene2044	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0073
trd_A0074	trd_A0074		trd_A0074	63224	63841	-	conserved hypothetical protein		gene	gene2045	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0074
trd_A0075	trd_A0075		trd_A0075	63857	64828	-	phosphoenolpyruvate synthase (Pyruvate%2C water dikinase)(PEP synthase)	identified by match to protein family HMM PF01326	gene	gene2046	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0075
trd_A0076	trd_A0076		trd_A0076	64834	65556	-	cyclase family protein	identified by match to protein family HMM PF04199	gene	gene2047	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0076
trd_A0077	trd_A0077		trd_A0077	65573	66286	-	transcriptional Regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene2048	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0077
trd_A0078	trd_A0078		trd_A0078	66360	67205	-	transcriptional regulator	identified by match to protein family HMM PF09370	gene	gene2049	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0078
trd_A0079	trd_A0079		trd_A0079	67225	68463	-	domain protein	identified by match to protein family HMM PF06792	gene	gene2050	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0079
trd_A0080	trd_A0080		trd_A0080	68476	69210	-	ABC-type branched-chain amino acid transport systems ATPase component	identified by match to protein family HMM PF00005	gene	gene2051	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0080
trd_A0081	trd_A0081		trd_A0081	69203	69982	-	ABC transporter permease protein	identified by match to protein family HMM PF00005	gene	gene2052	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0081
trd_A0082	trd_A0082		trd_A0082	69986	71413	-	ABC-type branched-chain amino acid transport systems periplasmic component		gene	gene2053	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0082
trd_A0083	trd_A0083		trd_A0083	71481	72461	-	ABC transporter ATP-binding protein	identified by match to protein family HMM PF02653	gene	gene2054	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0083
trd_A0084	trd_A0084		trd_A0084	72458	73327	-	ABC transporter ATP-binding protein	identified by match to protein family HMM PF02653	gene	gene2055	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0084
trd_A0085	trd_A0085		trd_A0085	73455	73736	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2056	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0085
trd_A0086	trd_A0086		trd_A0086	73787	74176	+	glyoxalase/bleomycin resistance protein/dioxygenase	identified by match to protein family HMM PF00903	gene	gene2057	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0086
trd_A0087	trd_A0087		trd_A0087	74387	75178	+	dehydrogenase/reductase sdr family member 4	identified by match to protein family HMM PF00106%3B short-chain dehydrogenase/reductase family member 4%3B nadph-dependentcarbonyl reductase/nadp-retinol dehydrogenase%3B cr%3B phcr%3B peroxisomal short-chain alcohol dehydrogenase%3B nadph-dependentretinol dehydrogenase	gene	gene2058	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0087
trd_A0088	trd_A0088		trd_A0088	75377	75523	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2059	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0088
trd_A0089	trd_A0089		trd_A0089	75647	78358	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF02361%3B match to protein family HMM PF02463	gene	gene2060	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0089
trd_A0090	trd_A0090		trd_A0090	78420	78977	-	membrane spanning protein		gene	gene2061	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0090
trd_A0091	trd_A0091		trd_A0091	79167	80162	+	daunorubicin resistance ATP-binding protein DrrA	identified by match to protein family HMM PF00005	gene	gene2062	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0091
trd_A0092	trd_A0092		trd_A0092	80919	82190	-	major facilitator superfamily MFS_1	identified by match to protein family HMM PF07690	gene	gene2063	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0092
trd_A0093	trd_A0093		trd_A0093	82151	82408	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2064	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0093
trd_A0094	trd_A0094		trd_A0094	82374	82814	-	domain of unknown function	identified by match to protein family HMM PF08818	gene	gene2065	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0094
trd_A0095	trd_A0095		trd_A0095	82811	82951	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2066	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0095
trd_A0096	trd_A0096		trd_A0096	82954	83196	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2067	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0096
trd_A0097	trd_A0097		trd_A0097	83368	85086	+	medium-chain-fatty-acid--CoA ligase (Medium-chain acyl-CoA synthetase)	identified by match to protein family HMM PF00501	gene	gene2068	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0097
trd_A0098	trd_A0098		trd_A0098	85083	87296	+	probable 3-hydroxyacyl-CoA dehydrogenase	identified by match to protein family HMM PF00378%3B match to protein family HMM PF00725%3B match to protein family HMM PF02737	gene	gene2069	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0098
trd_A0099	trd_A0099		trd_A0099	87323	88093	+	enoyl-coa hydratase%2C (shortchain enoyl-coa hydratase) (sceh) (enoyl-coa hydratase 1)	identified by match to protein family HMM PF00378	gene	gene2070	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0099
trd_A0100	trd_A0100		trd_A0100	88190	89530	-	VanW family protein	identified by match to protein family HMM PF01522	gene	gene2071	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0100
trd_A0101	trd_A0101		trd_A0101	89582	89776	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2072	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0101
trd_A0102	trd_A0102		trd_A0102	90215	91165	+	conserved hypothetical protein		gene	gene2073	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0102
trd_A0103	trd_A0103		trd_A0103	91162	94488	+	conserved hypothetical protein		gene	gene2074	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0103
trd_A0104	trd_A0104		trd_A0104	95772	96326	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2075	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0104
trd_A0105	trd_A0105		trd_A0105	96313	96813	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2076	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0105
trd_A0106	trd_A0106		trd_A0106	96854	101002	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2077	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0106
trd_A0107	trd_A0107		trd_A0107	101002	103182	+	PglZ domain family	identified by match to protein family HMM PF08665	gene	gene2078	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0107
trd_A0108	trd_A0108		trd_A0108	103179	104627	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02688	gene	gene2079	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0108
trd_A0109	trd_A0109		trd_A0109	104585	105778	+	cysteine desulfurase%2C (m-Nfs1)	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212	gene	gene2080	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0109
trd_A0110	trd_A0110		trd_A0110	106181	107512	-	crispr-associated protein%2C family	identified by match to protein family HMM PF09670%3B match to protein family HMM TIGR02710	gene	gene2081	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0110
trd_A0111	trd_A0111		trd_A0111	107516	108463	-	crispr-associated protein%2C Cmr6 family	identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR01898	gene	gene2082	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0111
trd_A0112	trd_A0112	cmr	cmr	108456	108878	-	crispr-associated protein%2C Cmr5 family	identified by match to protein family HMM PF09701%3B match to protein family HMM TIGR01881	gene	gene2083	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0112
trd_A0113	trd_A0113	cmr	cmr	108893	109816	-	crispr-associated ramp protein%2C Cmr4 family	identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR02580	gene	gene2084	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0113
trd_A0114	trd_A0114	cmr	cmr	109818	110888	-	crispr-associated protein%2C Cmr3 family	identified by match to protein family HMM PF09700%3B match to protein family HMM TIGR01888	gene	gene2085	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0114
trd_A0115	trd_A0115	crm	crm	110885	112699	-	crispr-associated protein%2C Crm2 family	identified by match to protein family HMM TIGR02577	gene	gene2086	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0115
trd_A0116	trd_A0116		trd_A0116	112692	113846	-	crispr-associated protein%2C Cmr1 family%2C putative	identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR01894	gene	gene2087	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0116
trd_A0117	trd_A0117		trd_A0117	113862	114668	-	serine protease	identified by match to protein family HMM PF00089	gene	gene2088	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0117
trd_A0118	trd_A0118		trd_A0118	114678	115337	-	conserved hypothetical protein		gene	gene2089	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0118
trd_A0119	trd_A0119		trd_A0119	115352	115468	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2090	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0119
trd_A0120	trd_A0120		trd_A0120	115580	116920	-	peptidase domain protein		gene	gene2091	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0120
trd_A0121	trd_A0121		trd_A0121	117048	118442	+	peptidase M20	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene2092	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0121
trd_A0122	trd_A0122		trd_A0122	118641	118817	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2093	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0122
trd_A0123	trd_A0123		trd_A0123	118881	120989	+	nerd domain protein	identified by match to protein family HMM PF08378	gene	gene2094	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0123
trd_A0124	trd_A0124		trd_A0124	121064	121201	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2095	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0124
trd_A0125	trd_A0125		trd_A0125	121353	121526	-	down syndrome critical region protein 9		gene	gene2096	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0125
trd_A0126	trd_A0126		trd_A0126	121736	122689	+	conserved hypothetical protein		gene	gene2097	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0126
trd_A0127	trd_A0127		trd_A0127	122972	123310	-	virion protein US10		gene	gene2098	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0127
trd_A0128	trd_A0128		trd_A0128	123383	123766	+	conserved hypothetical protein		gene	gene2099	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0128
trd_A0129	trd_A0129		trd_A0129	123800	124210	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2100	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0129
trd_A0130	trd_A0130		trd_A0130	124279	125658	-	VanW family protein	identified by match to protein family HMM TIGR01409	gene	gene2101	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0130
trd_A0131	trd_A0131		trd_A0131	125704	126303	-	conserved hypothetical protein		gene	gene2102	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0131
trd_A0132	trd_A0132		trd_A0132	126561	127151	+	RNA polymerase%2C sigma-24 subunit%2C ECF subfamily	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene2103	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0132
trd_A0133	trd_A0133		trd_A0133	127120	127863	+	conserved hypothetical protein		gene	gene2104	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0133
trd_A0134	trd_A0134		trd_A0134	127972	128085	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2105	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0134
trd_A0135	trd_A0135		trd_A0135	128171	128287	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2106	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0135
trd_A0136	trd_A0136		trd_A0136	128380	129120	+	putative deacetylase		gene	gene2107	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0136
trd_A0137	trd_A0137		trd_A0137	129095	129808	+	glycosyl transferase%2C family 2	identified by match to protein family HMM PF00535	gene	gene2108	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0137
trd_A0138	trd_A0138		trd_A0138	129813	130526	+	glycosyltransferase	identified by match to protein family HMM PF00535	gene	gene2109	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0138
trd_A0139	trd_A0139		trd_A0139	131104	131598	-	vitamin K epoxide reductase	identified by match to protein family HMM PF07884	gene	gene2111	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0139
trd_A0140	trd_A0140		trd_A0140	130523	131122	+	hypothetical membrane protein		gene	gene2110	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0140
trd_A0141	trd_A0141		trd_A0141	131595	132350	-	dsba oxidoreductase	identified by match to protein family HMM PF01323	gene	gene2112	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0141
trd_A0142	trd_A0142		trd_A0142	132304	132462	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2113	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0142
trd_A0143	trd_A0143		trd_A0143	132491	133441	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2114	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0143
trd_A0144	trd_A0144		trd_A0144	134050	136404	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2116	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0144
trd_A0145	trd_A0145		trd_A0145	133869	134090	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2115	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0145
trd_A0146	trd_A0146		trd_A0146	136922	137194	-	hydroxyproline-rich glycoprotein family protein		gene	gene2117	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0146
trd_A0147	trd_A0147		trd_A0147	138011	138394	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2118	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0147
trd_A0148	trd_A0148		trd_A0148	138489	139259	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2119	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0148
trd_A0149	trd_A0149		trd_A0149	139314	139835	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2120	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0149
trd_A0150	trd_A0150		trd_A0150	139983	141065	+	heme O oxygenase	identified by match to protein family HMM PF02628	gene	gene2121	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0150
trd_A0151	trd_A0151	rsgA	rsgA	141094	142083	+	ribosome small subunit-dependent GTPase A	identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157	gene	gene2122	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0151
trd_A0152	trd_A0152		trd_A0152	142080	142559	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2123	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0152
trd_A0153	trd_A0153		trd_A0153	142822	143601	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene2124	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0153
trd_A0154	trd_A0154		trd_A0154	143695	143988	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2125	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0154
trd_A0155	trd_A0155		trd_A0155	143988	146300	-	two-component response regulator	identified by match to protein family HMM PF00072	gene	gene2126	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0155
trd_A0156	trd_A0156	alr	alr	146373	147674	-	alanine racemase	identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492	gene	gene2127	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0156
trd_A0157	trd_A0157		trd_A0157	147821	148009	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2128	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0157
trd_A0158	trd_A0158		trd_A0158	149598	151214	-	acetolactate synthase	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene2130	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0158
trd_A0159	trd_A0159		trd_A0159	149491	149616	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2129	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0159
trd_A0160	trd_A0160		trd_A0160	151378	151845	-	conserved hypothetical protein		gene	gene2132	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0160
trd_A0161	trd_A0161		trd_A0161	151281	151418	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2131	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0161
trd_A0162	trd_A0162		trd_A0162	151961	153001	+	proline racemase	identified by match to protein family HMM PF05544	gene	gene2133	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0162
trd_A0163	trd_A0163		trd_A0163	153098	153271	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2134	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0163
trd_A0164	trd_A0164		trd_A0164	153718	153957	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2135	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0164
trd_A0165	trd_A0165	lysX	lysX	154013	154894	+	lysine biosynthesis enzyme LysX	identified by match to protein family HMM PF02222%3B match to protein family HMM PF02655%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR00768%3B match to protein family HMM TIGR02144	gene	gene2136	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0165
trd_A0166	trd_A0166		trd_A0166	155152	155589	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2137	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0166
trd_A0167	trd_A0167		trd_A0167	155586	155726	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2138	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0167
trd_A0168	trd_A0168		trd_A0168	156550	156726	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2139	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0168
trd_A0169	trd_A0169		trd_A0169	156700	157626	+	conserved hypothetical protein		gene	gene2140	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0169
trd_A0170	trd_A0170		trd_A0170	157746	158489	-	putative integral membrane protein	identified by match to protein family HMM PF01061	gene	gene2141	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0170
trd_A0171	trd_A0171		trd_A0171	158493	159413	-	Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I)	identified by match to protein family HMM PF00005	gene	gene2142	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0171
trd_A0172	trd_A0172		trd_A0172	159410	159766	-	transcriptional regulator	identified by match to protein family HMM PF01022	gene	gene2143	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0172
trd_A0173	trd_A0173		trd_A0173	159753	160319	-	conserved hypothetical protein		gene	gene2144	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0173
trd_A0174	trd_A0174		trd_A0174	160393	161196	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2145	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0174
trd_A0175	trd_A0175		trd_A0175	161324	161758	+	citrate synthase 3 (Citrate synthase III)		gene	gene2146	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0175
trd_A0176	trd_A0176	prpD	prpD	161784	163229	+	2-methylcitrate dehydratase	identified by match to protein family HMM PF03972%3B match to protein family HMM TIGR02330	gene	gene2147	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0176
trd_A0177	trd_A0177	prpB	prpB	163233	164156	+	methylisocitrate lyase	identified by match to protein family HMM TIGR02317	gene	gene2148	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0177
trd_A0178	trd_A0178		trd_A0178	164153	164455	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2149	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0178
trd_A0179	trd_A0179		trd_A0179	164513	164803	+	beta-N-acetylhexosaminidase%2C putative		gene	gene2150	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0179
trd_A0180	trd_A0180		trd_A0180	164800	165165	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2151	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0180
trd_A0181	trd_A0181		trd_A0181	165268	165963	-	PRC-barrel domain protein	identified by match to protein family HMM PF05239	gene	gene2152	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0181
trd_A0182	trd_A0182		trd_A0182	166056	166556	+	ferric uptake regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene2153	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0182
trd_A0183	trd_A0183		trd_A0183	166712	167683	+	periplasmic solute binding protein	identified by match to protein family HMM PF01297	gene	gene2154	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0183
trd_A0184	trd_A0184		trd_A0184	167683	168507	+	manganese transport system ATP-binding protein MntA	identified by match to protein family HMM PF00005	gene	gene2155	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0184
trd_A0185	trd_A0185		trd_A0185	168491	169348	+	manganese transport system membrane protein MntB	identified by match to protein family HMM PF00950	gene	gene2156	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0185
trd_A0186	trd_A0186		trd_A0186	169473	169598	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2157	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0186
trd_A0187	trd_A0187		trd_A0187	169637	170041	+	conserved hypothetical protein		gene	gene2158	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0187
trd_A0188	trd_A0188		trd_A0188	170121	170516	-	conserved hypothetical protein		gene	gene2159	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0188
trd_A0189	trd_A0189		trd_A0189	170515	170784	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2160	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0189
trd_A0190	trd_A0190		trd_A0190	171723	172175	-	conserved hypothetical protein		gene	gene2161	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0190
trd_A0191	trd_A0191		trd_A0191	172172	172999	-	ABC-2 type transporter superfamily	identified by match to protein family HMM PF01061	gene	gene2162	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0191
trd_A0192	trd_A0192		trd_A0192	172989	175340	-	nitrous oxidase accessory protein NosD	identified by match to protein family HMM PF00005%3B match to protein family HMM PF05048	gene	gene2163	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0192
trd_A0193	trd_A0193		trd_A0193	175345	175980	-	C553-type monoheme cytochrome c		gene	gene2164	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0193
trd_A0194	trd_A0194		trd_A0194	176069	178183	-	nitrous-oxide reductase (N(2)OR) (N2Oreductase)	identified by match to protein family HMM PF00116	gene	gene2165	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0194
trd_A0195	trd_A0195		trd_A0195	178229	179482	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2166	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0195
trd_A0196	trd_A0196		trd_A0196	180289	180852	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2168	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0196
trd_A0197	trd_A0197		trd_A0197	179555	180310	+	uracil-DNA glycosylase superfamily	identified by match to protein family HMM PF03167	gene	gene2167	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0197
trd_A0198	trd_A0198		trd_A0198	180820	181542	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2169	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0198
trd_A0199	trd_A0199		trd_A0199	181549	181716	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2170	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0199
trd_A0200	trd_A0200		trd_A0200	181915	183282	-	conserved hypothetical protein	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01415	gene	gene2171	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0200
trd_A0201	trd_A0201		trd_A0201	183439	184425	-	zinc transporter ZitB	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene2172	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0201
trd_A0202	trd_A0202		trd_A0202	184412	186673	-	iron-sulfur cluster binding protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02589%3B match to protein family HMM PF02754	gene	gene2173	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0202
trd_A0203	trd_A0203		trd_A0203	186834	186947	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2174	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0203
trd_A0204	trd_A0204		trd_A0204	186988	187119	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2175	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0204
trd_A0205	trd_A0205		trd_A0205	187819	189423	+	transcriptional regulator%2C CdaR family	identified by match to protein family HMM PF07905	gene	gene2176	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0205
trd_A0206	trd_A0206		trd_A0206	189571	189765	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2177	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0206
trd_A0207	trd_A0207		trd_A0207	190089	190781	-	type IV pilus assembly protein PilZ	identified by match to protein family HMM PF07238	gene	gene2178	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0207
trd_A0208	trd_A0208		trd_A0208	191803	193011	+	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene2179	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0208
trd_A0209	trd_A0209		trd_A0209	193192	193731	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2180	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0209
trd_A0210	trd_A0210		trd_A0210	194755	196728	+	chemotaxis response regulator protein-glutamate methylesterase ofgroup 3 operon	identified by match to protein family HMM PF01339%3B match to protein family HMM PF01739	gene	gene2181	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0210
trd_A0211	trd_A0211		trd_A0211	196765	197145	+	transcriptional regulatory protein ResD	identified by match to protein family HMM PF00072	gene	gene2182	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0211
trd_A0212	trd_A0212		trd_A0212	197174	197686	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2183	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0212
trd_A0213	trd_A0213		trd_A0213	197706	198455	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2184	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0213
trd_A0214	trd_A0214		trd_A0214	199628	201718	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2185	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0214
trd_A0215	trd_A0215		trd_A0215	201699	204797	+	CheA signal transduction histidine kinase	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895	gene	gene2186	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0215
trd_A0216	trd_A0216		trd_A0216	205135	205347	+	conserved hypothetical protein		gene	gene2187	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0216
trd_A0217	trd_A0217		trd_A0217	205377	207350	+	methyl-accepting chemotaxis protein%2C putative	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2188	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0217
trd_A0218	trd_A0218		trd_A0218	207465	207617	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2189	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0218
trd_A0219	trd_A0219		trd_A0219	207664	208026	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2190	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0219
trd_A0220	trd_A0220		trd_A0220	208072	210048	+	flagellar hook-associated 2 domain protein%2C putative	identified by match to protein family HMM PF02465%3B match to protein family HMM PF07195%3B match to protein family HMM PF07196	gene	gene2191	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0220
trd_A0221	trd_A0221	fliS	fliS	210073	210480	+	flagellar protein FliS	identified by match to protein family HMM PF02561%3B match to protein family HMM TIGR00208	gene	gene2192	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0221
trd_A0222	trd_A0222		trd_A0222	210494	210859	+	tripartite motif-containing protein 56		gene	gene2193	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0222
trd_A0223	trd_A0223		trd_A0223	210863	211531	+	peptidase C60%2C sortase A and B	identified by match to protein family HMM PF04203%3B match to protein family HMM TIGR01076	gene	gene2194	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0223
trd_A0224	trd_A0224		trd_A0224	212911	213705	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2195	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0224
trd_A0225	trd_A0225		trd_A0225	213722	214555	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2196	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0225
trd_A0226	trd_A0226		trd_A0226	215553	215729	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2197	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0226
trd_A0227	trd_A0227		trd_A0227	215770	216009	+	conserved hypothetical protein		gene	gene2198	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0227
trd_A0228	trd_A0228		trd_A0228	216088	217638	+	copper resistance protein A	identified by match to protein family HMM PF00394%3B match to protein family HMM PF07731%3B match to protein family HMM PF07732	gene	gene2199	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0228
trd_A0229	trd_A0229		trd_A0229	217732	218556	-	D-beta-hydroxybutyrate dehydrogenase (bdh) (3-hydroxybutyrate dehydrogenase) (3-hbdh)	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene2200	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0229
trd_A0230	trd_A0230		trd_A0230	218608	219423	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)	identified by match to protein family HMM PF00106	gene	gene2201	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0230
trd_A0231	trd_A0231		trd_A0231	219485	220036	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2202	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0231
trd_A0232	trd_A0232		trd_A0232	220132	220272	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2203	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0232
trd_A0233	trd_A0233		trd_A0233	220371	221891	+	transcriptional Regulator of molybdate metabolism%2C XRE family	identified by match to protein family HMM PF01381	gene	gene2204	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0233
trd_A0234	trd_A0234	modA	modA	221916	222794	+	molybdate ABC transporter%2C periplasmic molybdate-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256	gene	gene2205	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0234
trd_A0235	trd_A0235	modB	modB	222791	223642	+	molybdate ABC transporter%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01581%3B match to protein family HMM TIGR02141	gene	gene2206	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0235
trd_A0236	trd_A0236		trd_A0236	223654	224463	+	conserved hypothetical protein		gene	gene2207	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0236
trd_A0237	trd_A0237		trd_A0237	225753	226343	+	protein of unknown function	identified by match to protein family HMM PF05685	gene	gene2208	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0237
trd_A0238	trd_A0238		trd_A0238	226432	227358	-	UspA domain protein	identified by match to protein family HMM PF00582	gene	gene2209	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0238
trd_A0239	trd_A0239		trd_A0239	227355	228644	-	mn2+/fe2+ transporter%2C nramp family	identified by match to protein family HMM PF01566%3B match to protein family HMM TIGR01197	gene	gene2210	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0239
trd_A0240	trd_A0240		trd_A0240	228708	228824	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2211	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0240
trd_A0241	trd_A0241		trd_A0241	229225	229608	+	hepn domain protein	identified by match to protein family HMM PF05168	gene	gene2212	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0241
trd_A0242	trd_A0242		trd_A0242	229978	231054	-	alkaline phosphatase (apase)	identified by match to protein family HMM PF00149	gene	gene2214	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0242
trd_A0243	trd_A0243		trd_A0243	229619	230002	+	DNA polymerase beta domain protein region	identified by match to protein family HMM PF01909	gene	gene2213	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0243
trd_A0244	trd_A0244		trd_A0244	231142	231432	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2215	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0244
trd_A0245	trd_A0245		trd_A0245	231455	231886	-	ppox class probable f420-dependent enzyme%2C family	identified by match to protein family HMM PF01243%3B match to protein family HMM TIGR03668	gene	gene2216	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0245
trd_A0246	trd_A0246		trd_A0246	232297	232722	+	cupin 2 conserved barrel domain protein	identified by match to protein family HMM PF07883	gene	gene2217	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0246
trd_A0247	trd_A0247		trd_A0247	233458	233979	+	conserved hypothetical protein		gene	gene2218	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0247
trd_A0248	trd_A0248		trd_A0248	233990	235093	+	NrtC protein		gene	gene2219	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0248
trd_A0249	trd_A0249		trd_A0249	235060	235830	+	aliphatic sulfonates import ATP-binding protein SsuB	identified by match to protein family HMM PF00005	gene	gene2220	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0249
trd_A0250	trd_A0250		trd_A0250	235827	237077	+	sulfonate ABC transporter periplasmic sulfonate-binding protein		gene	gene2221	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0250
trd_A0251	trd_A0251		trd_A0251	237074	237889	+	nitrate transport permease protein NrtB	identified by match to protein family HMM PF00528	gene	gene2222	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0251
trd_A0252	trd_A0252		trd_A0252	237959	238696	-	cyclase		gene	gene2223	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0252
trd_A0253	trd_A0253		trd_A0253	238711	239349	-	uridine 5'-monophosphate synthase (UMP synthase) (Fragment)	identified by match to protein family HMM PF00156	gene	gene2224	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0253
trd_A0254	trd_A0254		trd_A0254	239357	239497	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2225	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0254
trd_A0255	trd_A0255		trd_A0255	239522	240886	+	folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase)	identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01499%3B fpgs%3B tetrahydrofolate synthase%3B tetrahydrofolylpolyglutamate synthase	gene	gene2226	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0255
trd_A0256	trd_A0256		trd_A0256	241110	242141	+	cell envelope-related transcriptional attenuator	identified by match to protein family HMM PF03816%3B match to protein family HMM TIGR00350	gene	gene2227	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0256
trd_A0257	trd_A0257		trd_A0257	242209	243120	+	conserved hypothetical protein		gene	gene2228	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0257
trd_A0258	trd_A0258		trd_A0258	243141	243986	+	alpha/beta hydrolase fold protein	identified by match to protein family HMM PF00561	gene	gene2229	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0258
trd_A0259	trd_A0259		trd_A0259	245410	246246	-	alpha/beta hydrolase fold protein	identified by match to protein family HMM PF00561	gene	gene2231	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0259
trd_A0260	trd_A0260		trd_A0260	244133	245413	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2230	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0260
trd_A0261	trd_A0261	menD	menD	246249	248000	-	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase	identified by match to protein family HMM PF02776%3B match to protein family HMM TIGR00173	gene	gene2232	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0261
trd_A0262	trd_A0262		trd_A0262	248004	249389	-	salicylate biosynthesis isochorismate synthase (Isochorismate mutase)	identified by match to protein family HMM PF00425%3B match to protein family HMM TIGR00543	gene	gene2233	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0262
trd_A0263	trd_A0263		trd_A0263	249386	250036	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene2234	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0263
trd_A0264	trd_A0264		trd_A0264	250215	250328	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2235	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0264
trd_A0265	trd_A0265		trd_A0265	250728	251594	-	glycerophosphoryl diester phosphodiesterase	identified by match to protein family HMM PF03009	gene	gene2236	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0265
trd_A0266	trd_A0266		trd_A0266	251745	252743	+	sn-glycerol-3-phosphate transport system permease protein UgpA	identified by match to protein family HMM PF00528	gene	gene2237	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0266
trd_A0267	trd_A0267		trd_A0267	252736	253578	+	binding-protein-dependent transport systems inner membrane component	identified by match to protein family HMM PF00528	gene	gene2238	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0267
trd_A0268	trd_A0268		trd_A0268	253637	255067	+	extracellular solute-binding protein%2C family 1	identified by match to protein family HMM PF01547	gene	gene2239	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0268
trd_A0269	trd_A0269		trd_A0269	255064	255258	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2240	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0269
trd_A0270	trd_A0270		trd_A0270	255307	255465	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2241	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0270
trd_A0271	trd_A0271		trd_A0271	255477	255992	-	nudix hydrolase%2C putative	identified by match to protein family HMM PF00293	gene	gene2242	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0271
trd_A0272	trd_A0272		trd_A0272	255997	256398	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2243	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0272
trd_A0273	trd_A0273		trd_A0273	256639	257022	-	conserved hypothetical protein		gene	gene2244	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0273
trd_A0274	trd_A0274		trd_A0274	257019	257918	-	ATPase%2C RecA-superfamily	identified by match to protein family HMM PF06745	gene	gene2245	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0274
trd_A0275	trd_A0275		trd_A0275	258143	259816	+	thymidylate synthase	identified by match to protein family HMM PF02511	gene	gene2246	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0275
trd_A0276	trd_A0276		trd_A0276	260108	261037	-	conserved hypothetical protein		gene	gene2247	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0276
trd_A0277	trd_A0277		trd_A0277	261060	261491	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2248	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0277
trd_A0278	trd_A0278		trd_A0278	261946	265020	+	conserved hypothetical protein		gene	gene2249	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0278
trd_A0279	trd_A0279		trd_A0279	265017	265640	+	conserved hypothetical protein		gene	gene2250	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0279
trd_A0280	trd_A0280		trd_A0280	265659	268598	+	DNA methylAse containing a Zn-ribbon		gene	gene2251	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0280
trd_A0281	trd_A0281		trd_A0281	268611	271313	+	helicase%2C Snf2 family	identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271	gene	gene2252	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0281
trd_A0282	trd_A0282		trd_A0282	271733	272170	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2253	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0282
trd_A0283	trd_A0283		trd_A0283	272173	273051	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2254	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0283
trd_A0284	trd_A0284		trd_A0284	273076	273591	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2255	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0284
trd_A0285	trd_A0285		trd_A0285	273596	273985	-	conserved hypothetical protein		gene	gene2256	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0285
trd_A0286	trd_A0286		trd_A0286	274243	274359	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2257	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0286
trd_A0287	trd_A0287		trd_A0287	274365	275192	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2258	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0287
trd_A0288	trd_A0288		trd_A0288	275561	276136	-	protein of unknown function	identified by match to protein family HMM PF05685	gene	gene2259	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0288
trd_A0289	trd_A0289		trd_A0289	276462	277037	-	protein of unknown function	identified by match to protein family HMM PF05685	gene	gene2260	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0289
trd_A0290	trd_A0290		trd_A0290	277167	277631	-	putative ribonuclease BN		gene	gene2261	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0290
trd_A0291	trd_A0291		trd_A0291	277647	278015	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2262	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0291
trd_A0292	trd_A0292		trd_A0292	278117	279793	-	peptidase S1 and S6%2C chymotrypsin/Hap%2C putative	identified by match to protein family HMM PF00595	gene	gene2263	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0292
trd_A0293	trd_A0293		trd_A0293	279798	280148	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2264	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0293
trd_A0294	trd_A0294		trd_A0294	280110	281801	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene2265	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0294
trd_A0295	trd_A0295		trd_A0295	281870	283291	+	methyl-accepting chemotaxis sensory transducer	identified by match to protein family HMM PF00015	gene	gene2266	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0295
trd_A0296	trd_A0296		trd_A0296	283470	283781	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2268	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0296
trd_A0297	trd_A0297		trd_A0297	283339	283473	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2267	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0297
trd_A0298	trd_A0298		trd_A0298	283752	283916	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2269	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0298
trd_A0299	trd_A0299		trd_A0299	283958	285409	+	xanthine/uracil permease	identified by match to protein family HMM PF00860	gene	gene2270	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0299
trd_A0300	trd_A0300		trd_A0300	285418	285636	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2271	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0300
trd_A0301	trd_A0301		trd_A0301	285659	285832	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2272	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0301
trd_A0302	trd_A0302		trd_A0302	285971	287281	-	cation diffusion facilitator family transporter	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene2274	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0302
trd_A0303	trd_A0303		trd_A0303	285831	285992	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2273	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0303
trd_A0304	trd_A0304	menB	menB	287835	288662	+	naphthoate synthase	identified by match to protein family HMM PF00378%3B match to protein family HMM TIGR01929	gene	gene2275	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0304
trd_A0305	trd_A0305	menA	menA	288676	289599	+	1%2C4-dihydroxy-2-naphthoate octaprenyltransferase	identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR00751	gene	gene2276	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0305
trd_A0306	trd_A0306	menC	menC	289596	290681	+	O-succinylbenzoic acid (OSB) synthetase	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene2277	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0306
trd_A0307	trd_A0307		trd_A0307	290702	291079	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2278	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0307
trd_A0308	trd_A0308	menE	menE	291092	292555	+	O-succinylbenzoate-CoA ligase	identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR01923	gene	gene2279	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0308
trd_A0309	trd_A0309		trd_A0309	292678	295191	+	NAD-dependent malic enzyme (NAD-ME)	identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949	gene	gene2280	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0309
trd_A0310	trd_A0310		trd_A0310	295268	298048	-	cation-transporting ATPase Pma1	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene2281	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0310
trd_A0311	trd_A0311		trd_A0311	298105	299493	-	UspA domain protein%2C putative	identified by match to protein family HMM PF00571%3B match to protein family HMM PF00582	gene	gene2282	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0311
trd_A0312	trd_A0312		trd_A0312	299587	299730	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2283	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0312
trd_A0313	trd_A0313		trd_A0313	299964	300488	+	conserved hypothetical protein		gene	gene2284	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0313
trd_A0314	trd_A0314		trd_A0314	301557	302822	-	permease of the major facilitator superfamily	identified by match to protein family HMM PF05977%3B match to protein family HMM PF07690	gene	gene2286	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0314
trd_A0315	trd_A0315		trd_A0315	300523	301572	+	protease do	identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595	gene	gene2285	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0315
trd_A0316	trd_A0316		trd_A0316	302795	303124	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2287	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0316
trd_A0317	trd_A0317		trd_A0317	303190	304161	-	D%2CD carboxypeptidase	identified by match to protein family HMM PF00768	gene	gene2288	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0317
trd_A0318	trd_A0318		trd_A0318	304158	305006	-	conserved hypothetical protein		gene	gene2289	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0318
trd_A0319	trd_A0319		trd_A0319	305003	305797	-	methyltransferase%2C putative	identified by match to protein family HMM PF08242	gene	gene2290	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0319
trd_A0320	trd_A0320		trd_A0320	305812	306966	-	protease DO family protein	identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595	gene	gene2291	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0320
trd_A0321	trd_A0321		trd_A0321	307073	307639	+	RNA polymerase%2C sigma-24 subunit%2C ECF subfamily	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene2292	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0321
trd_A0322	trd_A0322		trd_A0322	307636	308382	+	conserved hypothetical protein		gene	gene2293	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0322
trd_A0323	trd_A0323		trd_A0323	308618	310462	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein	identified by match to protein family HMM PF00496%3B match to protein family HMM TIGR01409	gene	gene2294	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0323
trd_A0324	trd_A0324		trd_A0324	310544	311470	-	oligopeptide transport system permease protein OppC	identified by match to protein family HMM PF00528	gene	gene2295	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0324
trd_A0325	trd_A0325		trd_A0325	311498	312430	-	dipeptide transport system permease protein DppB	identified by match to protein family HMM PF00528	gene	gene2296	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0325
trd_A0326	trd_A0326		trd_A0326	312746	313786	-	thioredoxin reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene2297	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0326
trd_A0327	trd_A0327		trd_A0327	313789	314685	-	catechol 2%2C3-dioxygenase	identified by match to protein family HMM PF00903	gene	gene2298	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0327
trd_A0328	trd_A0328		trd_A0328	314715	316361	-	thiamine pyrophosphate enzyme%2C central domain family	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene2299	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0328
trd_A0329	trd_A0329		trd_A0329	316394	317194	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2300	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0329
trd_A0330	trd_A0330		trd_A0330	317191	318807	-	feruloyl-CoA synthetase	identified by match to protein family HMM PF00501	gene	gene2301	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0330
trd_A0331	trd_A0331		trd_A0331	318824	319936	-	ABC transporter%2C quaternary amine uptake transporter (QAT) family%2C substrate-binding protein	identified by match to protein family HMM PF04069	gene	gene2302	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0331
trd_A0332	trd_A0332		trd_A0332	320064	320873	-	ABC nitrate/sulfonate/bicarbonate family transporter%2C inner membrane subunit	identified by match to protein family HMM PF00528	gene	gene2303	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0332
trd_A0333	trd_A0333		trd_A0333	320883	321656	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding	identified by match to protein family HMM PF00378	gene	gene2304	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0333
trd_A0334	trd_A0334		trd_A0334	321677	322393	-	enoyl-CoA hydratase/isomerase	identified by match to protein family HMM PF00378	gene	gene2305	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0334
trd_A0335	trd_A0335		trd_A0335	322390	323571	-	amidohydrolase 3	identified by match to protein family HMM PF01979%3B match to protein family HMM PF04909	gene	gene2306	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0335
trd_A0336	trd_A0336		trd_A0336	323584	324174	-	peptide synthase	identified by match to protein family HMM PF06684	gene	gene2307	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0336
trd_A0337	trd_A0337		trd_A0337	324171	326534	-	carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L)	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene2308	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0337
trd_A0338	trd_A0338		trd_A0338	326531	327397	-	2%2C3-dihydroxy-2%2C3-dihydro-phenylpropionate dehydrogenase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene2309	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0338
trd_A0339	trd_A0339		trd_A0339	327394	327651	-	dihydrodiol dehydrogenase		gene	gene2310	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0339
trd_A0340	trd_A0340		trd_A0340	327674	328228	-	3-phenylpropionate dioxygenase subunit beta (Digoxigenin subunit beta)	identified by match to protein family HMM PF00866	gene	gene2311	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0340
trd_A0341	trd_A0341		trd_A0341	328265	329632	-	3-phenylpropionate dioxygenase subunit alpha (Digoxigenin subunit alpha)	identified by match to protein family HMM PF00355%3B match to protein family HMM PF00848	gene	gene2312	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0341
trd_A0342	trd_A0342		trd_A0342	329666	330694	-	aldolase	identified by match to protein family HMM PF00701	gene	gene2313	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0342
trd_A0343	trd_A0343		trd_A0343	330806	331549	-	GntR family transcriptional regulator	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene2314	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0343
trd_A0344	trd_A0344		trd_A0344	332058	333080	-	thioredoxin reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene2315	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0344
trd_A0345	trd_A0345		trd_A0345	333259	334704	+	V-type sodium ATP synthase subunit J (Na(+)-translocating ATPase subunit J)	identified by match to protein family HMM PF02386	gene	gene2316	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0345
trd_A0346	trd_A0346		trd_A0346	334887	336293	+	potassium uptake protein KtrB%2C putative	identified by match to protein family HMM PF02386	gene	gene2317	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0346
trd_A0347	trd_A0347		trd_A0347	336318	336953	+	K+ uptake transporter trka family protein	identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254	gene	gene2318	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0347
trd_A0348	trd_A0348		trd_A0348	337006	337785	+	fumarylacetoacetate hydrolase family protein	identified by match to protein family HMM PF01557	gene	gene2319	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0348
trd_A0349	trd_A0349		trd_A0349	337796	338428	+	HD domain containing 2	identified by match to protein family HMM PF01966	gene	gene2320	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0349
trd_A0350	trd_A0350		trd_A0350	338473	339810	+	magnesium and cobalt efflux protein CorC	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471	gene	gene2321	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0350
trd_A0351	trd_A0351		trd_A0351	340260	340754	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2322	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0351
trd_A0352	trd_A0352		trd_A0352	342390	342971	-	NTPase	identified by match to protein family HMM PF01931	gene	gene2324	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0352
trd_A0353	trd_A0353		trd_A0353	340795	342429	+	conserved hypothetical protein		gene	gene2323	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0353
trd_A0354	trd_A0354		trd_A0354	342975	344048	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF01061	gene	gene2325	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0354
trd_A0355	trd_A0355		trd_A0355	344045	344848	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2326	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0355
trd_A0356	trd_A0356		trd_A0356	345138	346856	+	glycerol-3-phosphate dehydrogenase 2	identified by match to protein family HMM PF01266	gene	gene2327	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0356
trd_A0357	trd_A0357		trd_A0357	346975	347112	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2328	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0357
trd_A0358	trd_A0358	glpK	glpK	347068	349200	+	glycerol kinase	identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01311	gene	gene2329	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0358
trd_A0359	trd_A0359		trd_A0359	349280	349438	-	conserved hypothetical protein		gene	gene2330	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0359
trd_A0360	trd_A0360		trd_A0360	349473	349955	-	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene2331	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0360
trd_A0361	trd_A0361		trd_A0361	350072	350302	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2332	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0361
trd_A0362	trd_A0362		trd_A0362	350521	351810	-	4-aminobutyrate aminotransferase	identified by match to protein family HMM PF00202%3B gamma-amino-n-butyratetransaminase%3B gaba transaminase%3B glutamate:succinic semialdehydetransaminase%3B gaba aminotransferase%3B gaba-at	gene	gene2333	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0362
trd_A0363	trd_A0363		trd_A0363	351950	353230	+	major facilitator superfamily MFS_1	identified by match to protein family HMM PF05977%3B match to protein family HMM PF07690	gene	gene2334	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0363
trd_A0364	trd_A0364		trd_A0364	353243	354463	+	multidrug resistance protein%2C putative	identified by match to protein family HMM PF07690	gene	gene2335	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0364
trd_A0365	trd_A0365		trd_A0365	354482	354925	+	putative 4-hydroxybenzoyl-CoA thioesterase		gene	gene2336	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0365
trd_A0366	trd_A0366	trpS	trpS	354977	355981	+	tryptophanyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233	gene	gene2337	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0366
trd_A0367	trd_A0367		trd_A0367	355996	356340	+	cupin 2%2C conserved barrel domain protein	identified by match to protein family HMM PF07883	gene	gene2338	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0367
trd_A0368	trd_A0368		trd_A0368	356363	356584	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2339	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0368
trd_A0369	trd_A0369		trd_A0369	356630	357016	-	monovalent cation/proton antiporter%2C MnhG/PhaG subunit	identified by match to protein family HMM PF03334%3B match to protein family HMM TIGR01300	gene	gene2340	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0369
trd_A0370	trd_A0370		trd_A0370	357013	357309	-	multiple resistance and pH regulation protein F	identified by match to protein family HMM PF04066	gene	gene2341	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0370
trd_A0371	trd_A0371		trd_A0371	357306	357779	-	cation antiporter	identified by match to protein family HMM PF01899	gene	gene2342	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0371
trd_A0372	trd_A0372		trd_A0372	357776	359293	-	Na(+)/H(+) antiporter subunit D (Multiple resistance and pH homeostasis protein D) (Mrp complex subunit D)	identified by match to protein family HMM PF00361	gene	gene2343	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0372
trd_A0373	trd_A0373		trd_A0373	359278	359721	-	NADH-ubiquinone oxidoreductase chain 4l	identified by match to protein family HMM PF00420	gene	gene2344	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0373
trd_A0374	trd_A0374		trd_A0374	359725	360147	-	cation:proton antiporter%2C putative	identified by match to protein family HMM PF04039	gene	gene2345	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0374
trd_A0375	trd_A0375		trd_A0375	360144	362474	-	Na(+)/H(+) antiporter subunit A (Multiple resistance and pH homeostasis protein A) (Mrp complex subunit A)	identified by match to protein family HMM PF00361	gene	gene2346	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0375
trd_A0376	trd_A0376		trd_A0376	363562	364167	-	conserved hypothetical protein	identified by match to protein family HMM PF03641%3B match to protein family HMM TIGR00730	gene	gene2348	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0376
trd_A0377	trd_A0377		trd_A0377	362801	363565	+	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene2347	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0377
trd_A0378	trd_A0378		trd_A0378	364348	364662	+	conserved hypothetical protein		gene	gene2349	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0378
trd_A0379	trd_A0379		trd_A0379	364706	364876	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2350	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0379
trd_A0380	trd_A0380	merA	merA	365005	366687	-	mercuric reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02053	gene	gene2351	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0380
trd_A0381	trd_A0381		trd_A0381	366684	367235	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2352	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0381
trd_A0382	trd_A0382		trd_A0382	367493	367633	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2353	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0382
trd_A0383	trd_A0383		trd_A0383	367650	368168	+	NADH:ubiquinone oxidoreductase%2C nadh-binding		gene	gene2354	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0383
trd_A0384	trd_A0384		trd_A0384	368419	369420	+	putative hypoxanthine phosphoribosyl transferase with additional GAF motif	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203	gene	gene2355	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0384
trd_A0385	trd_A0385		trd_A0385	370258	370674	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2356	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0385
trd_A0386	trd_A0386		trd_A0386	370948	372066	-	alcohol dehydrogenase B	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene2357	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0386
trd_A0387	trd_A0387		trd_A0387	372158	372292	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2358	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0387
trd_A0388	trd_A0388		trd_A0388	372388	372864	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2359	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0388
trd_A0389	trd_A0389		trd_A0389	372904	374268	+	4Fe-4S ferredoxin%2C iron-sulfur binding domain protein	identified by match to protein family HMM PF00116%3B match to protein family HMM PF09678	gene	gene2360	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0389
trd_A0390	trd_A0390		trd_A0390	374544	377975	+	ATP-dependent DNA helicase RecQ	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00614	gene	gene2361	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0390
trd_A0391	trd_A0391		trd_A0391	377959	378600	+	conserved hypothetical protein		gene	gene2362	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0391
trd_A0392	trd_A0392		trd_A0392	378929	379084	+	conserved hypothetical protein		gene	gene2363	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0392
trd_A0393	trd_A0393		trd_A0393	379110	379661	+	cytochrome a1 subunit II	identified by match to protein family HMM PF00116	gene	gene2364	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0393
trd_A0394	trd_A0394		trd_A0394	379671	381401	+	heme/copper-type cytochrome/quinol oxidase%2C subunit 1	identified by match to protein family HMM PF00115	gene	gene2365	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0394
trd_A0395	trd_A0395		trd_A0395	381499	383310	+	protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase)	identified by match to protein family HMM PF01040%3B match to protein family HMM PF02628%3B match to protein family HMM TIGR01473	gene	gene2366	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0395
trd_A0396	trd_A0396		trd_A0396	383427	384461	-	amidinotransferase	identified by match to protein family HMM PF02274	gene	gene2367	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0396
trd_A0397	trd_A0397		trd_A0397	384791	385660	+	histidinol-phosphatase	identified by match to protein family HMM PF02811%3B match to protein family HMM TIGR01856	gene	gene2368	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0397
trd_A0398	trd_A0398		trd_A0398	385733	387022	+	conserved hypothetical protein		gene	gene2369	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0398
trd_A0399	trd_A0399		trd_A0399	387200	387511	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2370	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0399
trd_A0400	trd_A0400		trd_A0400	387529	389796	-	xanthine dehydrogenase molybdenum-binding subunit	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene2371	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0400
trd_A0401	trd_A0401		trd_A0401	389894	390028	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2372	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0401
trd_A0402	trd_A0402	pfkB	pfkB	390037	391011	+	1-phosphofructokinase	identified by match to protein family HMM PF00294%3B match to protein family HMM PF08543%3B match to protein family HMM TIGR03168	gene	gene2373	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0402
trd_A0403	trd_A0403		trd_A0403	391349	391858	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2374	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0403
trd_A0404	trd_A0404		trd_A0404	391871	392629	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2375	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0404
trd_A0405	trd_A0405		trd_A0405	392714	393700	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2376	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0405
trd_A0406	trd_A0406		trd_A0406	393755	394579	+	protein of unknown function	identified by match to protein family HMM PF01927	gene	gene2377	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0406
trd_A0407	trd_A0407		trd_A0407	394933	396174	+	amidohydrolase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969	gene	gene2378	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0407
trd_A0408	trd_A0408		trd_A0408	396175	396699	+	deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) (MjDUT)	identified by match to protein family HMM PF00692	gene	gene2379	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0408
trd_A0409	trd_A0409		trd_A0409	396753	397160	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2380	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0409
trd_A0410	trd_A0410		trd_A0410	397174	397683	+	membrane protein of unknown function%2C putative		gene	gene2381	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0410
trd_A0411	trd_A0411		trd_A0411	400207	400377	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2383	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0411
trd_A0412	trd_A0412		trd_A0412	397727	400210	+	peptidase S16%2C lon domain protein	identified by match to protein family HMM PF05362	gene	gene2382	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0412
trd_A0413	trd_A0413		trd_A0413	400450	400575	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2384	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0413
trd_A0414	trd_A0414		trd_A0414	400731	402161	-	asparate kinase%2C monofunctional class	identified by match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00656%3B match to protein family HMM TIGR00657	gene	gene2385	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0414
trd_A0415	trd_A0415		trd_A0415	402488	403798	+	alanine-rich protein%2C putative	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene2386	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0415
trd_A0416	trd_A0416		trd_A0416	403985	404788	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2387	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0416
trd_A0417	trd_A0417		trd_A0417	404958	406397	+	autotransporter-associated beta strand repeat protein%2C putative		gene	gene2388	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0417
trd_A0418	trd_A0418		trd_A0418	406543	407733	+	conserved repeat domain protein%2C putative		gene	gene2389	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0418
trd_A0419	trd_A0419		trd_A0419	408079	408219	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2390	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0419
trd_A0420	trd_A0420		trd_A0420	408227	408409	+	SelT/SelW/selH	identified by match to protein family HMM TIGR02174	gene	gene2391	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0420
trd_A0421	trd_A0421	thiI	thiI	408461	409684	+	thiamine biosynthesis/tRNA modification protein ThiI	identified by match to protein family HMM PF02568%3B match to protein family HMM PF02926%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00342	gene	gene2392	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0421
trd_A0422	trd_A0422		trd_A0422	410525	410686	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2393	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0422
trd_A0423	trd_A0423		trd_A0423	410708	410983	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2394	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0423
trd_A0424	trd_A0424		trd_A0424	410976	411131	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2395	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0424
trd_A0425	trd_A0425		trd_A0425	411196	412803	-	band 7 protein	identified by match to protein family HMM PF01145	gene	gene2396	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0425
trd_A0426	trd_A0426		trd_A0426	412800	413354	-	conserved hypothetical protein		gene	gene2397	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0426
trd_A0427	trd_A0427		trd_A0427	413404	413631	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2398	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0427
trd_A0428	trd_A0428	eat	eat	413652	415190	-	ethanolamine permease	identified by match to protein family HMM PF00324%3B match to protein family HMM TIGR00908	gene	gene2399	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0428
trd_A0429	trd_A0429		trd_A0429	415221	416003	-	2%2C5-dichloro-2%2C5-cyclohexadiene-1%2C4-diol dehydrogenase (2%2C5-ddol dehydrogenase)	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene2400	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0429
trd_A0430	trd_A0430		trd_A0430	416018	417403	-	glutamate--ammonia ligase	identified by match to protein family HMM PF00120	gene	gene2401	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0430
trd_A0431	trd_A0431		trd_A0431	417521	417712	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2402	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0431
trd_A0432	trd_A0432		trd_A0432	417792	419369	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2403	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0432
trd_A0433	trd_A0433		trd_A0433	419399	419803	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2404	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0433
trd_A0434	trd_A0434		trd_A0434	419877	420017	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2405	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0434
trd_A0435	trd_A0435		trd_A0435	420119	421216	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2406	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0435
trd_A0436	trd_A0436	map	map	422355	423104	-	methionine aminopeptidase%2C type I	identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500	gene	gene2408	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0436
trd_A0437	trd_A0437		trd_A0437	421318	422358	+	integral membrane protein	identified by match to protein family HMM PF00892%3B match to protein family HMM PF03151	gene	gene2407	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0437
trd_A0438	trd_A0438		trd_A0438	423347	423871	+	conserved hypothetical protein		gene	gene2409	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0438
trd_A0439	trd_A0439		trd_A0439	423885	424385	+	copper binding protein%2C plastocyanin/azurin family	identified by match to protein family HMM PF00127	gene	gene2410	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0439
trd_A0440	trd_A0440		trd_A0440	424568	425116	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2411	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0440
trd_A0441	trd_A0441		trd_A0441	425113	425526	+	conserved hypothetical protein	identified by match to protein family HMM PF07366	gene	gene2412	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0441
trd_A0442	trd_A0442	ftsH	ftsH	425905	428004	+	cell division protein FtsH	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene2413	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0442
trd_A0443	trd_A0443		trd_A0443	428098	428823	+	conserved hypothetical integral membrane protein	identified by match to protein family HMM PF02592%3B match to protein family HMM TIGR00697	gene	gene2414	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0443
trd_A0444	trd_A0444		trd_A0444	428878	430839	-	twin-arginine translocation pathway signal	identified by match to protein family HMM PF05787%3B match to protein family HMM TIGR01409	gene	gene2415	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0444
trd_A0445	trd_A0445		trd_A0445	431015	431176	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2416	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0445
trd_A0446	trd_A0446	fabD	fabD	431176	432126	+	malonyl CoA-acyl carrier protein transacylase	identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128	gene	gene2417	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0446
trd_A0447	trd_A0447	fabF	fabF	432148	433395	+	beta-ketoacyl-acyl-carrier-protein synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150	gene	gene2418	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0447
trd_A0448	trd_A0448		trd_A0448	433436	435166	-	DNA mismatch repair protein MutL	identified by match to protein family HMM PF01119%3B match to protein family HMM PF02518%3B match to protein family HMM PF08676%3B match to protein family HMM TIGR00585	gene	gene2419	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0448
trd_A0449	trd_A0449	mutS	mutS	435188	437833	-	DNA mismatch repair protein MutS	identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070	gene	gene2420	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0449
trd_A0450	trd_A0450		trd_A0450	438153	438362	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2421	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0450
trd_A0451	trd_A0451		trd_A0451	438396	438680	+	conserved hypothetical protein		gene	gene2422	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0451
trd_A0452	trd_A0452		trd_A0452	438673	439938	+	aspartate aminotransferase (transaminase a) (aspat)	identified by match to protein family HMM PF00155	gene	gene2423	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0452
trd_A0453	trd_A0453		trd_A0453	440479	441000	+	cytochrome c oxidase%2C subunit II	identified by match to protein family HMM PF00116	gene	gene2424	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0453
trd_A0454	trd_A0454		trd_A0454	441015	442499	+	heme-copper respiratory oxidase family	identified by match to protein family HMM PF00115	gene	gene2425	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0454
trd_A0455	trd_A0455		trd_A0455	442529	443401	+	formate/nitrite transporter	identified by match to protein family HMM PF01226	gene	gene2426	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0455
trd_A0456	trd_A0456		trd_A0456	443398	444273	+	cytochrome c oxidase Caa3 assembly factor (Caa3_CtaG) superfamily	identified by match to protein family HMM PF09678	gene	gene2427	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0456
trd_A0457	trd_A0457		trd_A0457	444320	445639	+	lysine-specific histone demethylase 1	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01593%3B flavin-containingamine oxidase domain-containing protein 2%3B braf35-hdac complexprotein	gene	gene2428	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0457
trd_A0458	trd_A0458		trd_A0458	445709	446485	-	HAD-superfamily subfamily IIA hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01458%3B match to protein family HMM TIGR01460	gene	gene2429	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0458
trd_A0459	trd_A0459		trd_A0459	446769	447620	+	integral membrane protein DUF6	identified by match to protein family HMM PF00892	gene	gene2430	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0459
trd_A0460	trd_A0460		trd_A0460	447675	448664	+	2-hydroxy-3-oxopropionate reductase	identified by match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR01505	gene	gene2431	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0460
trd_A0461	trd_A0461		trd_A0461	448872	450356	-	glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADTsubunit A)	identified by match to protein family HMM PF01425	gene	gene2432	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0461
trd_A0462	trd_A0462		trd_A0462	450496	451200	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2433	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0462
trd_A0463	trd_A0463		trd_A0463	451682	452884	-	crispr-associated protein%2C Csx2 family	identified by match to protein family HMM PF09530%3B match to protein family HMM TIGR02221%3B match to protein family HMM TIGR02549	gene	gene2434	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0463
trd_A0464	trd_A0464		trd_A0464	454047	454511	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2436	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0464
trd_A0465	trd_A0465		trd_A0465	453059	454063	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2435	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0465
trd_A0466	trd_A0466		trd_A0466	454577	455362	-	putative integral membrane protein	identified by match to protein family HMM PF01061	gene	gene2437	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0466
trd_A0467	trd_A0467		trd_A0467	455409	455570	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2438	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0467
trd_A0468	trd_A0468		trd_A0468	455626	456471	-	ABC transporter%2C carbohydrate uptake transporter-1 (CUT1) family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene2439	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0468
trd_A0469	trd_A0469		trd_A0469	456468	457481	-	binding-protein-dependent transport systems inner membrane component	identified by match to protein family HMM PF00528	gene	gene2440	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0469
trd_A0470	trd_A0470		trd_A0470	457519	458880	-	extracellular solute-binding protein family 1	identified by match to protein family HMM PF01547	gene	gene2441	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0470
trd_A0471	trd_A0471		trd_A0471	458931	459743	-	GntR-family transcriptional regulator	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene2442	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0471
trd_A0472	trd_A0472		trd_A0472	459740	460018	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2443	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0472
trd_A0473	trd_A0473		trd_A0473	459979	461292	-	crispr-associated protein%2C Csm1 family		gene	gene2444	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0473
trd_A0474	trd_A0474		trd_A0474	461615	462394	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2445	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0474
trd_A0475	trd_A0475		trd_A0475	463564	464514	+	2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase	identified by match to protein family HMM PF01557	gene	gene2446	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0475
trd_A0476	trd_A0476		trd_A0476	464579	464881	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2447	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0476
trd_A0477	trd_A0477		trd_A0477	464901	465107	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2448	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0477
trd_A0478	trd_A0478		trd_A0478	465226	465765	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2449	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0478
trd_A0479	trd_A0479		trd_A0479	465906	470729	-	cation-transporting P-tyep ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene2450	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0479
trd_A0480	trd_A0480		trd_A0480	470751	471218	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2451	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0480
trd_A0481	trd_A0481		trd_A0481	471232	471471	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2452	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0481
trd_A0482	trd_A0482	manA	manA	471826	472929	-	mannose-6-phosphate isomerase%2C class I	identified by match to protein family HMM PF01238%3B match to protein family HMM TIGR00218	gene	gene2454	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0482
trd_A0483	trd_A0483		trd_A0483	471532	471831	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2453	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0483
trd_A0484	trd_A0484		trd_A0484	472926	473387	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2455	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0484
trd_A0485	trd_A0485		trd_A0485	473384	474658	-	sodium/hydrogen exchanger	identified by match to protein family HMM PF00999	gene	gene2456	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0485
trd_A0486	trd_A0486	lpdA	lpdA	474743	476152	-	dihydrolipoyl dehydrogenase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF00890%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350	gene	gene2457	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0486
trd_A0487	trd_A0487		trd_A0487	476659	477855	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2458	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0487
trd_A0488	trd_A0488		trd_A0488	477954	478697	-	RNA polymerase%2C sigma-24 subunit%2C ECF subfamily	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene2459	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0488
trd_A0489	trd_A0489		trd_A0489	478720	479313	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2460	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0489
trd_A0490	trd_A0490		trd_A0490	479382	479945	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2461	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0490
trd_A0491	trd_A0491		trd_A0491	479935	481725	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2462	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0491
trd_A0492	trd_A0492		trd_A0492	482304	483674	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2463	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0492
trd_A0493	trd_A0493		trd_A0493	483800	484051	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2464	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0493
trd_A0494	trd_A0494		trd_A0494	484294	485505	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2465	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0494
trd_A0495	trd_A0495		trd_A0495	485535	486839	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2466	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0495
trd_A0496	trd_A0496		trd_A0496	487307	487432	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2467	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0496
trd_A0497	trd_A0497		trd_A0497	488068	489270	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2468	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0497
trd_A0498	trd_A0498		trd_A0498	489568	490167	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2469	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0498
trd_A0499	trd_A0499		trd_A0499	490357	490470	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2470	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0499
trd_A0500	trd_A0500		trd_A0500	490469	490672	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2471	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0500
trd_A0501	trd_A0501		trd_A0501	490892	491260	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2472	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0501
trd_A0502	trd_A0502		trd_A0502	491945	493201	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2473	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0502
trd_A0503	trd_A0503	citZ	citZ	493435	494547	+	citrate synthase II	identified by match to protein family HMM PF00285%3B match to protein family HMM TIGR01800	gene	gene2474	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0503
trd_A0504	trd_A0504		trd_A0504	494616	495524	+	type II secretion system protein E%2C putative		gene	gene2475	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0504
trd_A0505	trd_A0505		trd_A0505	495551	496951	+	magnesium chelatase subunit ChlI		gene	gene2476	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0505
trd_A0506	trd_A0506		trd_A0506	496977	499076	+	von Willebrand factor type A		gene	gene2477	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0506
trd_A0507	trd_A0507		trd_A0507	499158	499451	+	conserved hypothetical protein		gene	gene2478	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0507
trd_A0508	trd_A0508		trd_A0508	499455	500234	-	biotin/lipoate A/B protein ligase	identified by match to protein family HMM PF03099	gene	gene2479	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0508
trd_A0509	trd_A0509		trd_A0509	500231	500518	-	biotin/lipoate A/B protein ligase		gene	gene2480	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0509
trd_A0510	trd_A0510		trd_A0510	500724	501263	+	membrane protein of unknown function		gene	gene2481	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0510
trd_A0511	trd_A0511		trd_A0511	501382	502221	-	hydrolase%2C carbon-nitrogen family protein	identified by match to protein family HMM PF00795	gene	gene2482	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0511
trd_A0512	trd_A0512		trd_A0512	502508	503017	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2483	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0512
trd_A0513	trd_A0513		trd_A0513	503082	504269	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2484	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0513
trd_A0514	trd_A0514		trd_A0514	504831	506882	+	hydantoin utilization protein A (ORF2)	identified by match to protein family HMM PF01968%3B match to protein family HMM PF05378	gene	gene2485	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0514
trd_A0515	trd_A0515		trd_A0515	506879	508480	+	5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase)	identified by match to protein family HMM PF02538	gene	gene2486	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0515
trd_A0516	trd_A0516		trd_A0516	508787	510232	+	Tat (twin-arginine translocation) pathway signal sequence domain protein	identified by match to protein family HMM TIGR01409	gene	gene2487	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0516
trd_A0517	trd_A0517		trd_A0517	510252	510989	-	conserved hypothetical protein	identified by match to protein family HMM PF04474	gene	gene2488	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0517
trd_A0518	trd_A0518		trd_A0518	511009	511197	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2489	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0518
trd_A0519	trd_A0519		trd_A0519	511183	512316	+	protein of unknown function%2C transmembrane	identified by match to protein family HMM PF01988	gene	gene2490	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0519
trd_A0520	trd_A0520		trd_A0520	512364	513758	-	FAD linked oxidase domain protein	identified by match to protein family HMM PF01565%3B match to protein family HMM PF08031	gene	gene2491	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0520
trd_A0521	trd_A0521		trd_A0521	513889	514848	-	isoaspartyl peptidase (ecaiii) (beta-aspartyl-peptidase) (isoaspartyl dipeptidase)	identified by match to protein family HMM PF01112	gene	gene2492	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0521
trd_A0522	trd_A0522		trd_A0522	514858	515508	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2493	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0522
trd_A0523	trd_A0523		trd_A0523	515647	515793	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2495	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0523
trd_A0524	trd_A0524		trd_A0524	515533	515682	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2494	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0524
trd_A0525	trd_A0525		trd_A0525	516647	519826	-	error-prone DNA polymerase	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594	gene	gene2496	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0525
trd_A0526	trd_A0526		trd_A0526	519841	520815	-	conserved hypothetical protein		gene	gene2497	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0526
trd_A0527	trd_A0527	recA	recA	521039	522112	-	RecA protein	identified by match to protein family HMM PF00154	gene	gene2498	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0527
trd_A0528	trd_A0528		trd_A0528	522274	522435	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2499	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0528
trd_A0529	trd_A0529		trd_A0529	522674	522883	+	chromate transporter		gene	gene2500	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0529
trd_A0530	trd_A0530		trd_A0530	523667	523789	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2502	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0530
trd_A0531	trd_A0531		trd_A0531	523401	523670	+	chromate transporter%2C chromate ion transporter		gene	gene2501	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0531
trd_A0532	trd_A0532		trd_A0532	524336	525487	-	sulfate/thiosulfate import ATP-binding protein CysA 2 (Sulfate-transporting ATPase 2)	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402	gene	gene2503	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0532
trd_A0533	trd_A0533		trd_A0533	525484	527058	-	binding-protein-dependent transport systems inner membrane component	identified by match to protein family HMM PF00528	gene	gene2504	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0533
trd_A0534	trd_A0534		trd_A0534	527115	528263	-	extracellular solute-binding protein%2C family 1	identified by match to protein family HMM PF01547	gene	gene2505	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0534
trd_A0535	trd_A0535		trd_A0535	528426	528572	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2506	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0535
trd_A0536	trd_A0536		trd_A0536	528837	529649	+	transcriptional regulator%2C IclR family	identified by match to protein family HMM PF01614%3B match to protein family HMM PF08279%3B match to protein family HMM PF09339	gene	gene2507	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0536
trd_A0537	trd_A0537		trd_A0537	529719	530468	+	protein of unknown function DUF59	identified by match to protein family HMM PF01883	gene	gene2508	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0537
trd_A0538	trd_A0538		trd_A0538	530465	531499	+	amidohydrolase 2	identified by match to protein family HMM PF04909	gene	gene2509	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0538
trd_A0539	trd_A0539		trd_A0539	531580	532623	+	alcohol dehydrogenase (ADH)	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene2510	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0539
trd_A0540	trd_A0540		trd_A0540	532881	533003	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2511	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0540
trd_A0541	trd_A0541		trd_A0541	533159	533326	-	conserved hypothetical protein		gene	gene2512	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0541
trd_A0542	trd_A0542		trd_A0542	538092	538706	-	isochorismatase hydrolase	identified by match to protein family HMM PF00857	gene	gene2513	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0542
trd_A0543	trd_A0543		trd_A0543	538904	539809	+	hydroxymethylglutaryl-CoA lyase%2C (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase)	identified by match to protein family HMM PF00682	gene	gene2514	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0543
trd_A0544	trd_A0544		trd_A0544	539851	540255	+	ppox class probable f420-dependent enzyme%2C family	identified by match to protein family HMM PF01243%3B match to protein family HMM TIGR03667	gene	gene2515	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0544
trd_A0545	trd_A0545		trd_A0545	540317	541240	-	UspA domain protein	identified by match to protein family HMM PF00582	gene	gene2516	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0545
trd_A0546	trd_A0546		trd_A0546	541368	542492	+	formamidase (Formamide amidohydrolase)	identified by match to protein family HMM PF03069	gene	gene2517	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0546
trd_A0547	trd_A0547		trd_A0547	542586	543017	-	peroxiredoxin OsmC (Osmotically-inducible protein C)	identified by match to protein family HMM PF02566%3B match to protein family HMM TIGR03562	gene	gene2518	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0547
trd_A0548	trd_A0548	cofE	cofE	543092	543844	-	F420-0:gamma-glutamyl ligase	identified by match to protein family HMM PF01996%3B match to protein family HMM TIGR01916	gene	gene2519	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0548
trd_A0549	trd_A0549		trd_A0549	543848	544261	-	pyridoxamine 5'-phosphate oxidase-related%2C FMN-binding	identified by match to protein family HMM PF01243%3B match to protein family HMM TIGR03618	gene	gene2520	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0549
trd_A0550	trd_A0550		trd_A0550	544410	545288	+	alpha/beta hydrolase fold protein	identified by match to protein family HMM PF00561	gene	gene2521	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0550
trd_A0551	trd_A0551		trd_A0551	545266	545394	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2522	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0551
trd_A0552	trd_A0552		trd_A0552	545422	545736	+	thioredoxin peroxidase		gene	gene2523	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0552
trd_A0553	trd_A0553		trd_A0553	545804	545998	-	putative glycosyl transferase		gene	gene2524	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0553
trd_A0554	trd_A0554		trd_A0554	546023	546850	-	xylose isomerase domain protein TIM barrel	identified by match to protein family HMM PF01261	gene	gene2525	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0554
trd_A0555	trd_A0555		trd_A0555	546913	547284	+	conserved hypothetical protein		gene	gene2526	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0555
trd_A0556	trd_A0556		trd_A0556	547600	547743	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2527	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0556
trd_A0557	trd_A0557		trd_A0557	547715	547969	+	protein-L-isoaspartate o-methyltransferase 1	protein-beta-aspartate methyltransferase 1%3B pimt 1%3B protein l-isoaspartylmethyltransferase 1%3B l-isoaspartyl protein carboxyl methyltransferase1	gene	gene2528	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0557
trd_A0558	trd_A0558		trd_A0558	547966	548235	+	protein of unknown function DUF92 transmembrane		gene	gene2529	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0558
trd_A0559	trd_A0559		trd_A0559	548760	549524	-	chlorite dismutase superfamily	identified by match to protein family HMM PF06778	gene	gene2531	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0559
trd_A0560	trd_A0560		trd_A0560	548251	548799	+	membrane protein		gene	gene2530	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0560
trd_A0561	trd_A0561		trd_A0561	549775	552438	-	peptidase M16 domain protein	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene2532	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0561
trd_A0562	trd_A0562	acnA	acnA	552494	555277	-	aconitate hydratase 1	identified by match to protein family HMM PF00330%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR01341	gene	gene2533	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0562
trd_A0563	trd_A0563		trd_A0563	555700	556806	-	xanthine dehydrogenase accessory factor%2C putative subfamily%2C putative	identified by match to protein family HMM PF02625%3B match to protein family HMM PF04945	gene	gene2534	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0563
trd_A0564	trd_A0564		trd_A0564	556793	559138	-	carbon-monoxide dehydrogenase%2C large subunit	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738%3B match to protein family HMM TIGR02416	gene	gene2535	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0564
trd_A0565	trd_A0565		trd_A0565	559142	559642	-	[2Fe-2S] binding domain protein	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene2536	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0565
trd_A0566	trd_A0566		trd_A0566	559655	560530	-	nicotine dehydrogenase chain A	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene2537	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0566
trd_A0567	trd_A0567		trd_A0567	560816	562819	-	peptidase S9%2C prolyl oligopeptidase active site domain protein	identified by match to protein family HMM PF00326%3B match to protein family HMM PF07676	gene	gene2538	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0567
trd_A0568	trd_A0568		trd_A0568	562844	563458	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase		gene	gene2539	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0568
trd_A0569	trd_A0569		trd_A0569	563455	564096	-	two-component response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene2540	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0569
trd_A0570	trd_A0570		trd_A0570	564093	565340	-	two-component sensor histidine kinase	identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730	gene	gene2541	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0570
trd_A0571	trd_A0571		trd_A0571	565333	565494	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2542	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0571
trd_A0572	trd_A0572		trd_A0572	565461	566606	+	conserved hypothetical protein		gene	gene2543	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0572
trd_A0573	trd_A0573		trd_A0573	566627	567727	+	dipeptidase	identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321	gene	gene2544	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0573
trd_A0574	trd_A0574		trd_A0574	567736	570006	-	ggdef domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM TIGR00254	gene	gene2545	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0574
trd_A0575	trd_A0575		trd_A0575	570116	571399	-	major facilitator superfamily MFS_1	identified by match to protein family HMM PF05977%3B match to protein family HMM PF07690	gene	gene2546	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0575
trd_A0576	trd_A0576		trd_A0576	571490	571942	+	integral membrane protein		gene	gene2547	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0576
trd_A0577	trd_A0577		trd_A0577	572468	572635	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2548	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0577
trd_A0578	trd_A0578		trd_A0578	572751	572981	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2549	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0578
trd_A0579	trd_A0579		trd_A0579	573004	573321	+	conserved hypothetical protein		gene	gene2550	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0579
trd_A0580	trd_A0580		trd_A0580	573465	574307	-	DegV family protein	identified by match to protein family HMM PF02645%3B match to protein family HMM TIGR00762	gene	gene2551	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0580
trd_A0581	trd_A0581		trd_A0581	574314	574955	-	membrane protein	identified by match to protein family HMM PF02660	gene	gene2552	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0581
trd_A0582	trd_A0582		trd_A0582	575050	576633	+	Dak phosphatase	identified by match to protein family HMM PF02734%3B match to protein family HMM TIGR03599	gene	gene2553	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0582
trd_A0583	trd_A0583		trd_A0583	576876	577241	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2554	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0583
trd_A0584	trd_A0584		trd_A0584	577216	577386	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2555	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0584
trd_A0585	trd_A0585		trd_A0585	577727	578017	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2556	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0585
trd_A0586	trd_A0586		trd_A0586	578038	578169	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2557	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0586
trd_A0587	trd_A0587		trd_A0587	578251	579186	-	conserved hypothetical protein		gene	gene2558	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0587
trd_A0588	trd_A0588		trd_A0588	579208	579753	-	ribose transport system permease protein RbsC	identified by match to protein family HMM PF02653	gene	gene2559	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0588
trd_A0589	trd_A0589		trd_A0589	579763	580197	-	ABC transporter%2C carbohydrate uptake transporter-2 (CUT2) family%2C permease protein		gene	gene2560	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0589
trd_A0590	trd_A0590		trd_A0590	580280	581116	-	metal-dependent hydrolase		gene	gene2561	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0590
trd_A0591	trd_A0591		trd_A0591	581127	582281	-	galactonate dehydratase	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene2562	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0591
trd_A0592	trd_A0592		trd_A0592	582300	583805	-	ribose import ATP-binding protein RbsA 1	identified by match to protein family HMM PF00005	gene	gene2563	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0592
trd_A0593	trd_A0593		trd_A0593	583867	584940	-	periplasmic binding protein/LacI transcriptional regulator	identified by match to protein family HMM PF00532	gene	gene2564	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0593
trd_A0594	trd_A0594		trd_A0594	585101	585937	-	IclR-family transcriptional regulator	identified by match to protein family HMM PF01614%3B match to protein family HMM PF09339	gene	gene2565	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0594
trd_A0595	trd_A0595		trd_A0595	586098	586235	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2566	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0595
trd_A0596	trd_A0596		trd_A0596	586344	586976	+	mucin%2C putative		gene	gene2567	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0596
trd_A0597	trd_A0597		trd_A0597	586989	588284	-	metal dependent phosphohydrolase	identified by match to protein family HMM PF01966	gene	gene2568	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0597
trd_A0598	trd_A0598		trd_A0598	588359	589279	+	proline dehydrogenase	identified by match to protein family HMM PF01619	gene	gene2569	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0598
trd_A0599	trd_A0599		trd_A0599	589483	590925	+	lpxtg-motif cell wall anchor domain protein	identified by match to protein family HMM TIGR01167	gene	gene2570	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0599
trd_A0600	trd_A0600		trd_A0600	591585	591794	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2571	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0600
trd_A0601	trd_A0601		trd_A0601	591927	592817	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2572	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0601
trd_A0602	trd_A0602		trd_A0602	593040	594080	+	cobalt transport protein CbiM	identified by match to protein family HMM PF01891	gene	gene2573	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0602
trd_A0603	trd_A0603	cbiQ	cbiQ	594096	594917	+	cobalt ABC transporter%2C permease protein CbiQ	identified by match to protein family HMM PF02361%3B match to protein family HMM TIGR02454	gene	gene2574	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0603
trd_A0604	trd_A0604		trd_A0604	594923	595732	+	cobalt import ATP-binding protein CbiO 2	identified by match to protein family HMM PF00005	gene	gene2575	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0604
trd_A0605	trd_A0605		trd_A0605	595797	596801	-	RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)	identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937	gene	gene2576	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0605
trd_A0606	trd_A0606		trd_A0606	596904	598061	-	trypsin domain protein	identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595	gene	gene2577	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0606
trd_A0607	trd_A0607		trd_A0607	598179	599618	-	sensor protein CutS	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene2578	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0607
trd_A0608	trd_A0608		trd_A0608	599625	600302	-	response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2579	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0608
trd_A0609	trd_A0609		trd_A0609	600453	601259	+	YceI family protein	identified by match to protein family HMM PF04264	gene	gene2580	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0609
trd_A0610	trd_A0610		trd_A0610	601256	602374	+	probable peptidase	identified by match to protein family HMM PF05448	gene	gene2581	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0610
trd_A0611	trd_A0611		trd_A0611	602420	603073	+	RNA polymerase sigma-H factor (Sigma-30)	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene2582	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0611
trd_A0612	trd_A0612		trd_A0612	603070	603828	+	putative transmembrane anti-sigma factor		gene	gene2583	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0612
trd_A0613	trd_A0613		trd_A0613	603830	604933	-	peptidase M29 aminopeptidase II	identified by match to protein family HMM PF02073	gene	gene2584	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0613
trd_A0614	trd_A0614		trd_A0614	605001	605138	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2585	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0614
trd_A0615	trd_A0615		trd_A0615	605191	606831	+	conserved hypothetical protein		gene	gene2586	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0615
trd_A0616	trd_A0616		trd_A0616	606944	607375	+	conserved hypothetical protein	identified by match to protein family HMM PF07811	gene	gene2587	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0616
trd_A0617	trd_A0617		trd_A0617	607372	607782	+	TadE family protein	identified by match to protein family HMM PF07811	gene	gene2588	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0617
trd_A0618	trd_A0618		trd_A0618	607793	609115	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2589	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0618
trd_A0619	trd_A0619		trd_A0619	609371	609679	-	GYD domain superfamily	identified by match to protein family HMM PF08734	gene	gene2590	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0619
trd_A0620	trd_A0620		trd_A0620	609695	610351	-	O-methyltransferase	identified by match to protein family HMM PF08242	gene	gene2591	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0620
trd_A0621	trd_A0621		trd_A0621	610453	611811	+	major facilitator superfamily MFS_1	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene2592	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0621
trd_A0622	trd_A0622	pyrD	pyrD	611884	613008	-	dihydroorotate oxidase	identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01036	gene	gene2593	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0622
trd_A0623	trd_A0623		trd_A0623	613053	613427	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2594	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0623
trd_A0624	trd_A0624		trd_A0624	613565	614278	-	HAD-superfamily hydrolase%2C subfamily IA%2C variant 3	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene2595	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0624
trd_A0625	trd_A0625		trd_A0625	614283	615743	-	conserved hypothetical protein	identified by match to protein family HMM PF01139	gene	gene2596	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0625
trd_A0626	trd_A0626		trd_A0626	615776	616201	-	protein archease (protein zbtb8os) (zinc finger and btb domain-containing opposite strand protein 8)	identified by match to protein family HMM PF01951	gene	gene2597	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0626
trd_A0627	trd_A0627		trd_A0627	616768	618318	+	conserved hypothetical protein		gene	gene2598	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0627
trd_A0628	trd_A0628		trd_A0628	618327	621245	-	formate dehydrogenase	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879	gene	gene2599	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0628
trd_A0629	trd_A0629		trd_A0629	621256	622788	-	4Fe-4S ferredoxin iron-sulfur binding domain protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF03916	gene	gene2600	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0629
trd_A0630	trd_A0630		trd_A0630	622800	623078	-	protein of unknown function	identified by match to protein family HMM PF02583	gene	gene2601	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0630
trd_A0631	trd_A0631		trd_A0631	623244	623369	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2603	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0631
trd_A0632	trd_A0632		trd_A0632	623047	623271	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2602	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0632
trd_A0633	trd_A0633		trd_A0633	623506	623706	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2604	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0633
trd_A0634	trd_A0634		trd_A0634	623691	625022	+	branched-chain amino acid ABC transporter%2C periplasmic amino acid-binding protein%2C putative	identified by match to protein family HMM PF01094	gene	gene2605	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0634
trd_A0635	trd_A0635		trd_A0635	625106	626176	+	inner-membrane translocator	identified by match to protein family HMM PF02653	gene	gene2606	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0635
trd_A0636	trd_A0636		trd_A0636	626173	627846	+	leucine/isoleucine/valine transporter permease subunit	identified by match to protein family HMM PF02653	gene	gene2607	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0636
trd_A0637	trd_A0637		trd_A0637	627859	628686	+	branched-chain amino acid transport ATP-binding protein LivG	identified by match to protein family HMM PF00005	gene	gene2608	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0637
trd_A0638	trd_A0638		trd_A0638	628673	629386	+	high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F)	identified by match to protein family HMM PF00005	gene	gene2609	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0638
trd_A0639	trd_A0639		trd_A0639	629390	630322	-	tartronate semialdehyde reductase	identified by match to protein family HMM PF03446	gene	gene2610	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0639
trd_A0640	trd_A0640		trd_A0640	630857	631519	-	peptidase C60 sortase A and B	identified by match to protein family HMM PF04203%3B match to protein family HMM TIGR01076	gene	gene2611	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0640
trd_A0641	trd_A0641		trd_A0641	631523	634222	-	conserved hypothetical protein	identified by match to protein family HMM PF02415%3B match to protein family HMM TIGR01376	gene	gene2612	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0641
trd_A0642	trd_A0642		trd_A0642	634308	635579	-	flagellar hook protein FlgE	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM PF07559%3B match to protein family HMM TIGR03506	gene	gene2613	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0642
trd_A0643	trd_A0643	flgD	flgD	635672	636112	-	flagellar hook capping protein	identified by match to protein family HMM PF03963	gene	gene2614	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0643
trd_A0644	trd_A0644		trd_A0644	636144	637547	-	putative MotD chemotaxis protein	identified by match to protein family HMM PF02120	gene	gene2615	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0644
trd_A0645	trd_A0645	flgB	flgB	637573	637989	-	flagellar basal-body rod protein FlgB	identified by match to protein family HMM PF00460%3B match to protein family HMM TIGR01396	gene	gene2616	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0645
trd_A0646	trd_A0646		trd_A0646	638000	638983	-	lytic transglycosylase%2C catalytic	identified by match to protein family HMM PF01464%3B match to protein family HMM PF01551	gene	gene2617	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0646
trd_A0647	trd_A0647	fliJ	fliJ	639003	639470	-	flagellar export protein FliJ	identified by match to protein family HMM TIGR02473	gene	gene2618	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0647
trd_A0648	trd_A0648	fliI	fliI	639485	640837	-	flagellar protein export ATPase FliI	identified by match to protein family HMM PF00006%3B match to protein family HMM TIGR01026%3B match to protein family HMM TIGR03496	gene	gene2619	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0648
trd_A0649	trd_A0649		trd_A0649	640827	641522	-	type III secretion system protein	identified by match to protein family HMM PF02108	gene	gene2620	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0649
trd_A0650	trd_A0650	fliG	fliG	641515	642549	-	flagellar motor switch protein FliG	identified by match to protein family HMM PF01706%3B match to protein family HMM TIGR00207	gene	gene2621	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0650
trd_A0651	trd_A0651	fliF	fliF	642557	644149	-	flagellar M-ring protein FliF	identified by match to protein family HMM PF01514%3B match to protein family HMM PF08345%3B match to protein family HMM TIGR00206	gene	gene2622	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0651
trd_A0652	trd_A0652	fliE	fliE	644176	644475	-	flagellar hook-basal body complex protein FliE	identified by match to protein family HMM PF02049%3B match to protein family HMM TIGR00205	gene	gene2623	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0652
trd_A0653	trd_A0653	flgC	flgC	644506	644961	-	flagellar basal-body rod protein FlgC	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR01395	gene	gene2624	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0653
trd_A0654	trd_A0654		trd_A0654	645324	645629	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2625	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0654
trd_A0655	trd_A0655		trd_A0655	645649	646149	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2626	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0655
trd_A0656	trd_A0656		trd_A0656	646158	646403	-	conserved hypothetical protein		gene	gene2627	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0656
trd_A0657	trd_A0657		trd_A0657	646818	648080	+	thermostable carboxypeptidase 1	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891	gene	gene2628	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0657
trd_A0658	trd_A0658		trd_A0658	648096	649379	+	glucose sorbosone dehydrogenase	identified by match to protein family HMM PF07995	gene	gene2629	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0658
trd_A0659	trd_A0659		trd_A0659	649544	650476	-	protein of unknown function DUF6%2C transmembrane	identified by match to protein family HMM PF00892	gene	gene2630	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0659
trd_A0660	trd_A0660		trd_A0660	650518	650994	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2631	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0660
trd_A0661	trd_A0661		trd_A0661	650998	652806	+	tungsten-containing aldehyde ferredoxin oxidoreductase	identified by match to protein family HMM PF01314%3B match to protein family HMM PF02730	gene	gene2632	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0661
trd_A0662	trd_A0662		trd_A0662	652810	653163	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2633	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0662
trd_A0663	trd_A0663		trd_A0663	653170	653628	-	endoribonuclease L-PSP	identified by match to protein family HMM PF01042	gene	gene2634	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0663
trd_A0664	trd_A0664		trd_A0664	653979	654632	+	protein DedA (Protein DSG-1)	identified by match to protein family HMM PF09335	gene	gene2635	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0664
trd_A0665	trd_A0665		trd_A0665	654835	656184	+	glutamine synthetase (Glutamate--ammonia ligase) (GS)	identified by match to protein family HMM PF00120	gene	gene2636	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0665
trd_A0666	trd_A0666		trd_A0666	656248	658488	+	amylo-alpha-1%2C6-glucosidase	identified by match to protein family HMM PF06202	gene	gene2637	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0666
trd_A0667	trd_A0667		trd_A0667	659136	659393	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2639	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0667
trd_A0668	trd_A0668		trd_A0668	658492	659163	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2638	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0668
trd_A0669	trd_A0669		trd_A0669	659836	660741	+	amidohydrolase family protein	identified by match to protein family HMM PF04909	gene	gene2640	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0669
trd_A0670	trd_A0670		trd_A0670	661188	662177	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2641	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0670
trd_A0671	trd_A0671		trd_A0671	662188	662625	+	phycocyanin alpha phycocyanobilin lyase	identified by match to protein family HMM PF03130	gene	gene2642	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0671
trd_A0672	trd_A0672		trd_A0672	662597	663601	+	ATPase associated with various cellular activities%2C AAA_3	identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728	gene	gene2643	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0672
trd_A0673	trd_A0673		trd_A0673	663604	664842	+	conserved repeat domain protein	identified by match to protein family HMM PF01882	gene	gene2644	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0673
trd_A0674	trd_A0674		trd_A0674	664826	666235	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2645	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0674
trd_A0675	trd_A0675		trd_A0675	666240	667433	-	methionine gamma-lyase (L-methioninase)	identified by match to protein family HMM PF01053	gene	gene2646	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0675
trd_A0676	trd_A0676		trd_A0676	667526	668569	+	luciferase family protein	identified by match to protein family HMM PF00296%3B match to protein family HMM TIGR03557	gene	gene2647	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0676
trd_A0677	trd_A0677		trd_A0677	668807	669004	-	conserved hypothetical protein		gene	gene2648	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0677
trd_A0678	trd_A0678		trd_A0678	669504	669635	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2649	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0678
trd_A0679	trd_A0679		trd_A0679	669774	670979	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2650	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0679
trd_A0680	trd_A0680		trd_A0680	671039	671503	-	binding-protein-dependent transport systems inner membrane component		gene	gene2651	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0680
trd_A0681	trd_A0681		trd_A0681	671738	672586	-	NAD-dependent deacetylase 1 (Regulatory protein SIR2homolog 1)	identified by match to protein family HMM PF02146	gene	gene2652	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0681
trd_A0682	trd_A0682	thiO	thiO	672761	673999	+	glycine oxidase ThiO	identified by match to protein family HMM PF01266%3B match to protein family HMM TIGR02352	gene	gene2653	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0682
trd_A0683	trd_A0683		trd_A0683	674009	674281	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2654	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0683
trd_A0684	trd_A0684		trd_A0684	674287	674487	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2655	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0684
trd_A0685	trd_A0685		trd_A0685	674556	674858	-	conserved hypothetical protein		gene	gene2656	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0685
trd_A0686	trd_A0686		trd_A0686	675236	675583	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2657	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0686
trd_A0687	trd_A0687		trd_A0687	676019	676336	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2658	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0687
trd_A0688	trd_A0688		trd_A0688	676705	677016	-	conserved hypothetical protein		gene	gene2659	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0688
trd_A0689	trd_A0689		trd_A0689	677026	678045	-	Tat (twin-arginine translocation) pathway signal sequence domain protein	identified by match to protein family HMM TIGR01409	gene	gene2660	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0689
trd_A0690	trd_A0690		trd_A0690	678170	678919	-	transcriptional regulator%2C LuxR family protein	identified by match to protein family HMM PF00196	gene	gene2661	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0690
trd_A0691	trd_A0691		trd_A0691	679025	680299	-	major facilitator superfamily MFS_1	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene2662	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0691
trd_A0692	trd_A0692		trd_A0692	680371	682428	-	peptidase families S8 and S53 domain protein	identified by match to protein family HMM PF00082	gene	gene2663	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0692
trd_A0693	trd_A0693	upp	upp	682467	683171	-	uracil phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01091	gene	gene2664	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0693
trd_A0694	trd_A0694		trd_A0694	683170	683283	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2665	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0694
trd_A0695	trd_A0695		trd_A0695	683482	684480	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2666	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0695
trd_A0696	trd_A0696		trd_A0696	684473	687922	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2667	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0696
trd_A0697	trd_A0697		trd_A0697	687912	688526	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2668	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0697
trd_A0698	trd_A0698		trd_A0698	688617	688730	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2669	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0698
trd_A0699	trd_A0699		trd_A0699	688729	690402	+	heme-binding protein A (Hemin-binding lipoprotein)	identified by match to protein family HMM PF00496%3B match to protein family HMM TIGR01409	gene	gene2670	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0699
trd_A0700	trd_A0700		trd_A0700	690513	691457	+	oligopeptide transport system permease protein AppB	identified by match to protein family HMM PF00528	gene	gene2671	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0700
trd_A0701	trd_A0701		trd_A0701	691470	692363	+	oligopeptide ABC transporter permease protein	identified by match to protein family HMM PF00528	gene	gene2672	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0701
trd_A0702	trd_A0702		trd_A0702	692380	693282	+	major pilin protein FimA	identified by match to protein family HMM PF06267%3B match to protein family HMM PF08823	gene	gene2673	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0702
trd_A0703	trd_A0703		trd_A0703	693377	693496	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2674	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0703
trd_A0704	trd_A0704		trd_A0704	693586	694776	+	ABC-type dipeptide/oligopeptide/nickel transport systems%2C periplasmic components	identified by match to protein family HMM PF00496	gene	gene2675	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0704
trd_A0705	trd_A0705		trd_A0705	694881	696164	+	oxidoreductase%2C streptomycin biosynthesis protein	identified by match to protein family HMM PF01408	gene	gene2676	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0705
trd_A0706	trd_A0706		trd_A0706	696145	697182	+	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	identified by match to protein family HMM PF01380%3B hexosephosphate aminotransferase%3B d-fructose-6-phosphate amidotransferase%3B gfat%3B l-glutamine-d-fructose-6-phosphateamidotransferase%3B glucosamine-6-phosphate synthase	gene	gene2677	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0706
trd_A0707	trd_A0707	nagA	nagA	697193	698416	+	N-acetylglucosamine-6-phosphate deacetylase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR00221	gene	gene2678	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0707
trd_A0708	trd_A0708		trd_A0708	698413	699528	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene2679	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0708
trd_A0709	trd_A0709	anmK	anmK	699531	700784	+	anhydro-N-acetylmuramic acid kinase	identified by match to protein family HMM PF03702	gene	gene2680	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0709
trd_A0710	trd_A0710		trd_A0710	700781	701089	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2681	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0710
trd_A0711	trd_A0711		trd_A0711	701228	702910	+	glycoside hydrolase family 20	identified by match to protein family HMM PF00728	gene	gene2682	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0711
trd_A0712	trd_A0712		trd_A0712	702978	703904	-	ATPase BadF/BadG/BcrA/BcrD type	identified by match to protein family HMM PF01869	gene	gene2683	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0712
trd_A0713	trd_A0713	murQ	murQ	703894	704811	-	N-acetylmuramic acid 6-phosphate etherase	identified by match to protein family HMM PF01380%3B match to protein family HMM TIGR00274	gene	gene2684	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0713
trd_A0714	trd_A0714		trd_A0714	705089	705274	-	conserved hypothetical protein		gene	gene2685	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0714
trd_A0715	trd_A0715		trd_A0715	705352	706683	+	enolase superfamily member 1	identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746	gene	gene2686	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0715
trd_A0716	trd_A0716		trd_A0716	707073	708059	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2687	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0716
trd_A0717	trd_A0717		trd_A0717	709026	709199	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2688	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0717
trd_A0718	trd_A0718		trd_A0718	709428	709583	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2689	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0718
trd_A0719	trd_A0719		trd_A0719	709748	712267	-	ATP-dependent helicase	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene2690	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0719
trd_A0720	trd_A0720		trd_A0720	712841	713194	-	conserved hypothetical protein		gene	gene2691	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0720
trd_A0721	trd_A0721		trd_A0721	713373	713555	-	SpoVT / AbrB like domain%2C putative		gene	gene2692	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0721
trd_A0722	trd_A0722		trd_A0722	713687	714430	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2693	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0722
trd_A0723	trd_A0723		trd_A0723	714536	714928	-	ATPase		gene	gene2694	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0723
trd_A0724	trd_A0724		trd_A0724	714916	715059	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2695	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0724
trd_A0725	trd_A0725		trd_A0725	715013	715420	-	ATPase		gene	gene2696	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0725
trd_A0726	trd_A0726		trd_A0726	715731	715883	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2697	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0726
trd_A0727	trd_A0727		trd_A0727	715955	717223	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2698	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0727
trd_A0728	trd_A0728		trd_A0728	718074	719117	-	peptidase M23B	identified by match to protein family HMM PF01551	gene	gene2699	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0728
trd_A0729	trd_A0729		trd_A0729	719114	720757	-	drug resistance MFS transporter%2C drug:H+ antiporter-1 (14 Spanner) (DHA2) family	identified by match to protein family HMM PF07690	gene	gene2700	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0729
trd_A0730	trd_A0730		trd_A0730	720835	722409	+	WD40 domain protein beta Propeller	identified by match to protein family HMM PF00565%3B match to protein family HMM PF05901	gene	gene2701	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0730
trd_A0731	trd_A0731		trd_A0731	722485	722628	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2702	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0731
trd_A0732	trd_A0732		trd_A0732	722619	722936	+	NmrA family protein		gene	gene2703	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0732
trd_A0733	trd_A0733		trd_A0733	723144	723395	+	conserved hypothetical protein		gene	gene2704	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0733
trd_A0734	trd_A0734		trd_A0734	723721	724014	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2705	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0734
trd_A0735	trd_A0735		trd_A0735	724333	725565	+	diguanylate phosphodiesterase	identified by match to protein family HMM PF08668	gene	gene2706	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0735
trd_A0736	trd_A0736		trd_A0736	726810	727688	-	haloalkane dehalogenase 1	identified by match to protein family HMM PF00561	gene	gene2708	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0736
trd_A0737	trd_A0737		trd_A0737	725566	726813	+	diguanylate phosphodiesterase	identified by match to protein family HMM PF08668	gene	gene2707	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0737
trd_A0738	trd_A0738		trd_A0738	727832	728314	+	nitrilotriacetate monooxygenase component B (NTAmonooxygenase component B) (NTA-MO B)	identified by match to protein family HMM PF01613	gene	gene2709	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0738
trd_A0739	trd_A0739		trd_A0739	728486	729130	+	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	identified by match to protein family HMM PF00578%3B match to protein family HMM PF08534	gene	gene2710	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0739
trd_A0740	trd_A0740		trd_A0740	729146	730291	-	monomeric sarcosine oxidase (msox)	identified by match to protein family HMM PF01266	gene	gene2711	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0740
trd_A0741	trd_A0741		trd_A0741	730467	730817	-	conserved hypothetical protein		gene	gene2712	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0741
trd_A0742	trd_A0742		trd_A0742	730829	731260	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2713	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0742
trd_A0743	trd_A0743		trd_A0743	731384	731986	-	O-methyltransferase%2C family 3	identified by match to protein family HMM PF01596	gene	gene2714	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0743
trd_A0744	trd_A0744		trd_A0744	732200	733465	+	arsenical pump membrane protein	identified by match to protein family HMM PF02040%3B match to protein family HMM PF03600	gene	gene2715	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0744
trd_A0745	trd_A0745		trd_A0745	733470	735029	-	type I phosphodiesterase/nucleotide pyrophosphatase	identified by match to protein family HMM PF01663	gene	gene2716	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0745
trd_A0746	trd_A0746		trd_A0746	735026	735145	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2717	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0746
trd_A0747	trd_A0747		trd_A0747	735162	735308	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2718	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0747
trd_A0748	trd_A0748		trd_A0748	735309	736169	+	arginase/agmatinase/formiminoglutamase	identified by match to protein family HMM PF00491	gene	gene2719	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0748
trd_A0749	trd_A0749		trd_A0749	736186	736560	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2720	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0749
trd_A0750	trd_A0750		trd_A0750	736733	737317	+	transcription regulator%2C Lrp/AsnC family	identified by match to protein family HMM PF01037	gene	gene2721	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0750
trd_A0751	trd_A0751		trd_A0751	738620	739387	-	peptidase C60 sortase A and B	identified by match to protein family HMM PF04203	gene	gene2723	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0751
trd_A0752	trd_A0752		trd_A0752	737301	738623	+	glutamate-1-semialdehyde 2%2C1-aminomutase (GSA)(Glutamate-1-semialdehyde aminotransferase) (GSA-AT)	identified by match to protein family HMM PF00202	gene	gene2722	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0752
trd_A0753	trd_A0753		trd_A0753	739479	740294	-	lipoprotein		gene	gene2724	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0753
trd_A0754	trd_A0754		trd_A0754	740814	741818	+	alcohol dehydrogenase%2C propanol-preferring	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene2725	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0754
trd_A0755	trd_A0755		trd_A0755	741917	742078	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2726	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0755
trd_A0756	trd_A0756		trd_A0756	742223	742387	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2727	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0756
trd_A0757	trd_A0757		trd_A0757	742602	742718	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2728	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0757
trd_A0758	trd_A0758		trd_A0758	742706	743047	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2729	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0758
trd_A0759	trd_A0759		trd_A0759	743060	743500	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2730	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0759
trd_A0760	trd_A0760		trd_A0760	743693	744040	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2731	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0760
trd_A0761	trd_A0761		trd_A0761	744092	744301	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2732	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0761
trd_A0762	trd_A0762		trd_A0762	744301	744477	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2733	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0762
trd_A0763	trd_A0763		trd_A0763	745141	745374	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2734	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0763
trd_A0764	trd_A0764	soj	soj	745429	746211	+	SpoOJ regulator protein	identified by match to protein family HMM PF01656	gene	gene2735	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0764
trd_A0765	trd_A0765		trd_A0765	746204	747190	+	stage 0 sporulation protein J	identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180	gene	gene2736	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0765
trd_A0766	trd_A0766		trd_A0766	747415	748305	+	type I restriction enzyme r protein n terminus (hsdr_n)	identified by match to protein family HMM PF04313	gene	gene2737	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0766
trd_A0767	trd_A0767		trd_A0767	748486	749091	-	BioY protein	identified by match to protein family HMM PF02632	gene	gene2738	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0767
trd_A0768	trd_A0768		trd_A0768	749141	749914	-	hypothetical protein	identified by match to protein family HMM PF03746	gene	gene2739	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0768
trd_A0769	trd_A0769		trd_A0769	749918	750910	-	urea amidolyase	identified by match to protein family HMM PF02626%3B match to protein family HMM TIGR00724	gene	gene2740	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0769
trd_A0770	trd_A0770		trd_A0770	750944	751936	-	urea amidolyase	identified by match to protein family HMM PF02682	gene	gene2741	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0770
trd_A0771	trd_A0771		trd_A0771	751968	752216	-	biotin carboxyl carrier protein of acetyl-coa carboxylase (bccp)	identified by match to protein family HMM PF00364	gene	gene2742	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0771
trd_A0772	trd_A0772		trd_A0772	752236	753243	-	ribose transport system permease protein RbsC	identified by match to protein family HMM PF02653	gene	gene2743	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0772
trd_A0773	trd_A0773		trd_A0773	753227	754762	-	ribose import ATP-binding protein RbsA 1	identified by match to protein family HMM PF00005	gene	gene2744	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0773
trd_A0774	trd_A0774		trd_A0774	754775	756058	-	periplasmic binding protein/LacI transcriptional regulator	identified by match to protein family HMM PF00532%3B match to protein family HMM TIGR01409	gene	gene2745	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0774
trd_A0775	trd_A0775		trd_A0775	756170	758524	-	carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L)	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene2746	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0775
trd_A0776	trd_A0776		trd_A0776	758538	759023	-	carbon monoxide dehydrogenase small chain (COdehydrogenase subunit S) (CO-DH S)	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene2747	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0776
trd_A0777	trd_A0777		trd_A0777	759044	759922	-	carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M)	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene2748	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0777
trd_A0778	trd_A0778	accC	accC	760136	761482	+	acetyl-CoA carboxylase%2C biotin carboxylase	identified by match to protein family HMM PF00289%3B match to protein family HMM PF02222%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR00514	gene	gene2749	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0778
trd_A0779	trd_A0779	ppsA	ppsA	761715	762797	-	phosphoenolpyruvate synthase	identified by match to protein family HMM PF01326	gene	gene2750	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0779
trd_A0780	trd_A0780		trd_A0780	762832	764646	-	phosphoenolpyruvate synthase/pyruvate phosphate dikinase	identified by match to protein family HMM PF00391	gene	gene2751	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0780
trd_A0781	trd_A0781		trd_A0781	764830	765063	-	conserved domain protein	identified by match to protein family HMM PF01037	gene	gene2752	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0781
trd_A0782	trd_A0782		trd_A0782	765208	766077	+	peptidase C60 sortase A and B	identified by match to protein family HMM PF04203%3B match to protein family HMM TIGR01076	gene	gene2753	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0782
trd_A0783	trd_A0783		trd_A0783	766058	766957	+	NADP oxidoreductase coenzyme f420-dependent	identified by match to protein family HMM PF01210%3B match to protein family HMM PF03807	gene	gene2754	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0783
trd_A0784	trd_A0784	panB	panB	766954	767859	+	3-methyl-2-oxobutanoate hydroxymethyltransferase	identified by match to protein family HMM PF02548%3B match to protein family HMM TIGR00222	gene	gene2755	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0784
trd_A0785	trd_A0785	panC	panC	767834	768682	+	pantoate--beta-alanine ligase	identified by match to protein family HMM PF02569%3B match to protein family HMM TIGR00018%3B match to protein family HMM TIGR00125	gene	gene2756	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0785
trd_A0786	trd_A0786		trd_A0786	768724	770373	+	serine/threonine-protein kinase PksC	identified by match to protein family HMM PF00069	gene	gene2757	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0786
trd_A0787	trd_A0787	lgt	lgt	770435	771295	+	prolipoprotein diacylglyceryl transferase	identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544	gene	gene2758	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0787
trd_A0788	trd_A0788		trd_A0788	771300	773054	-	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoAsynthetase)	identified by match to protein family HMM PF00501	gene	gene2759	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0788
trd_A0789	trd_A0789		trd_A0789	773222	774391	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2760	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0789
trd_A0790	trd_A0790		trd_A0790	774506	774682	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2761	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0790
trd_A0791	trd_A0791		trd_A0791	774719	776356	+	thiamine pyrophosphate enzyme%2C central domain family	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene2762	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0791
trd_A0792	trd_A0792		trd_A0792	776783	778189	+	glycine cleavage T protein	identified by match to protein family HMM PF01571	gene	gene2763	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0792
trd_A0793	trd_A0793		trd_A0793	778205	779572	+	extracellular ligand-binding receptor	identified by match to protein family HMM PF01094	gene	gene2764	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0793
trd_A0794	trd_A0794		trd_A0794	780057	780215	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2765	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0794
trd_A0795	trd_A0795		trd_A0795	780240	781817	+	amino acid permease-associated region%2C putative	identified by match to protein family HMM PF00324	gene	gene2766	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0795
trd_A0796	trd_A0796		trd_A0796	781827	782816	+	metallophosphoesterase		gene	gene2767	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0796
trd_A0797	trd_A0797		trd_A0797	784605	785033	-	protein ArsC (Arsenate reductase) (Arsenical pumpmodifier) (Low molecular weight protein-tyrosine-phosphatase)	identified by match to protein family HMM PF01451	gene	gene2769	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0797
trd_A0798	trd_A0798		trd_A0798	782834	784642	+	nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	identified by match to protein family HMM PF00795	gene	gene2768	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0798
trd_A0799	trd_A0799		trd_A0799	785191	785571	+	DNA polymerase%2C beta domain protein region	identified by match to protein family HMM PF01909	gene	gene2770	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0799
trd_A0800	trd_A0800		trd_A0800	785597	785926	+	hepn domain protein	identified by match to protein family HMM PF05168	gene	gene2771	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0800
trd_A0801	trd_A0801	cofD	cofD	786360	787334	+	lppg:fo 2-phospho-l-lactate transferase	identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01819	gene	gene2772	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0801
trd_A0802	trd_A0802		trd_A0802	787334	787936	+	2-phospho-L-lactate guanylyltransferase CofC	identified by match to protein family HMM PF01983%3B match to protein family HMM TIGR03552	gene	gene2773	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0802
trd_A0803	trd_A0803		trd_A0803	787978	788889	+	drug/metabolite transporter	identified by match to protein family HMM PF00892	gene	gene2774	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0803
trd_A0804	trd_A0804		trd_A0804	788896	789573	+	F420-0:gamma-glutamyl ligase	identified by match to protein family HMM PF00881	gene	gene2775	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0804
trd_A0805	trd_A0805		trd_A0805	789570	790385	+	nuclease	identified by match to protein family HMM PF00565%3B match to protein family HMM PF05901	gene	gene2776	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0805
trd_A0806	trd_A0806		trd_A0806	790497	792266	+	acetolactate synthase catalytic subunit	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776	gene	gene2777	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0806
trd_A0807	trd_A0807		trd_A0807	792358	792489	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2778	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0807
trd_A0808	trd_A0808		trd_A0808	794419	794832	-	asch domain family	identified by match to protein family HMM PF04266	gene	gene2780	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0808
trd_A0809	trd_A0809		trd_A0809	792548	794425	+	ABC-type transporter%2C ATPase component%2C fused to acetyltransferase domain	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00583	gene	gene2779	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0809
trd_A0810	trd_A0810		trd_A0810	795083	796384	+	major facilitator superfamily MFS_1	identified by match to protein family HMM PF07690	gene	gene2781	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0810
trd_A0811	trd_A0811		trd_A0811	796591	798027	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2782	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0811
trd_A0812	trd_A0812		trd_A0812	798242	799453	+	aspartate aminotransferase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF01212	gene	gene2783	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0812
trd_A0813	trd_A0813		trd_A0813	799524	800666	-	conserved hypothetical protein		gene	gene2784	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0813
trd_A0814	trd_A0814		trd_A0814	800663	801670	-	lipolytic enzyme%2C G-D-S-L	identified by match to protein family HMM PF00657	gene	gene2785	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0814
trd_A0815	trd_A0815		trd_A0815	801670	802791	-	histidine triad	identified by match to protein family HMM PF00293%3B match to protein family HMM PF01230	gene	gene2786	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0815
trd_A0816	trd_A0816		trd_A0816	802958	804442	+	undecaprenyl-phosphate glucose phosphotransferase	identified by match to protein family HMM PF02397%3B match to protein family HMM TIGR03023%3B match to protein family HMM TIGR03025	gene	gene2787	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0816
trd_A0817	trd_A0817		trd_A0817	804547	804708	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2788	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0817
trd_A0818	trd_A0818		trd_A0818	804702	804881	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2789	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0818
trd_A0819	trd_A0819		trd_A0819	804954	806090	+	glycosyl transferase%2C group 1	identified by match to protein family HMM PF00534	gene	gene2790	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0819
trd_A0820	trd_A0820		trd_A0820	806081	806791	+	lipopolysaccharide biosynthesis protein%2C putative	identified by match to protein family HMM PF02706	gene	gene2791	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0820
trd_A0821	trd_A0821		trd_A0821	806781	808127	+	capsular exopolysaccharide family	identified by match to protein family HMM PF02706	gene	gene2792	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0821
trd_A0822	trd_A0822		trd_A0822	808303	808995	-	conserved hypothetical protein		gene	gene2793	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0822
trd_A0823	trd_A0823		trd_A0823	808979	809407	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2794	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0823
trd_A0824	trd_A0824		trd_A0824	809488	809844	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2795	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0824
trd_A0825	trd_A0825		trd_A0825	809867	810118	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2796	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0825
trd_A0826	trd_A0826		trd_A0826	810698	811492	-	short chain enoyl-CoA hydratase	identified by match to protein family HMM PF00378	gene	gene2797	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0826
trd_A0827	trd_A0827		trd_A0827	811537	813456	-	O-acetylhomoserine (thiol)-lyase (O-acetylhomoserinesulfhydrylase) (OAH sulfhydrylase) (Homocysteine synthase)	identified by match to protein family HMM PF01041%3B match to protein family HMM PF01053%3B match to protein family HMM PF01212%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01326	gene	gene2798	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0827
trd_A0828	trd_A0828		trd_A0828	813577	815259	-	AMP-dependent synthetase and ligase	identified by match to protein family HMM PF00501	gene	gene2799	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0828
trd_A0829	trd_A0829		trd_A0829	815354	816724	-	major facilitator superfamily transporter	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene2800	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0829
trd_A0830	trd_A0830		trd_A0830	817462	817578	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2801	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0830
trd_A0831	trd_A0831		trd_A0831	817991	818344	+	transcriptional regulator%2C ArsR family	identified by match to protein family HMM PF01022	gene	gene2802	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0831
trd_A0832	trd_A0832		trd_A0832	818350	818544	+	type I antifreeze protein	identified by match to protein family HMM PF09723%3B match to protein family HMM TIGR02605	gene	gene2803	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0832
trd_A0833	trd_A0833		trd_A0833	818637	819038	+	domain of unknown function superfamily	identified by match to protein family HMM PF03625	gene	gene2804	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0833
trd_A0834	trd_A0834		trd_A0834	819052	820446	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00581%3B match to protein family HMM PF00753	gene	gene2805	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0834
trd_A0835	trd_A0835		trd_A0835	820580	820912	+	rhodanese domain protein	identified by match to protein family HMM PF00581	gene	gene2806	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0835
trd_A0836	trd_A0836		trd_A0836	821086	822300	-	putidaredoxin reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene2807	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0836
trd_A0837	trd_A0837		trd_A0837	822289	822564	+	conserved hypothetical protein		gene	gene2808	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0837
trd_A0838	trd_A0838		trd_A0838	822639	823241	-	rieske	identified by match to protein family HMM PF00355%3B match to protein family HMM PF09360	gene	gene2809	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0838
trd_A0839	trd_A0839		trd_A0839	823549	825096	-	probable membrane sugar transferase	identified by match to protein family HMM PF00535	gene	gene2810	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0839
trd_A0840	trd_A0840		trd_A0840	825134	826231	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2811	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0840
trd_A0841	trd_A0841		trd_A0841	826221	826487	-	conserved hypothetical protein		gene	gene2812	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0841
trd_A0842	trd_A0842		trd_A0842	826496	826657	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2813	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0842
trd_A0843	trd_A0843		trd_A0843	826949	828064	+	S-(hydroxymethyl)glutathione dehydrogenase	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240%3B glutathione-dependent formaldehyde dehydrogenase%3B gs-fdh%3B faldh%3B gd-faldh	gene	gene2814	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0843
trd_A0844	trd_A0844		trd_A0844	828359	829588	+	FMN-dependent dehydrogenase	identified by match to protein family HMM PF01070	gene	gene2815	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0844
trd_A0845	trd_A0845		trd_A0845	829757	829906	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2816	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0845
trd_A0846	trd_A0846		trd_A0846	829969	830136	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2817	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0846
trd_A0847	trd_A0847		trd_A0847	830095	831213	+	S-(hydroxymethyl)glutathione dehydrogenase	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240%3B glutathione-dependent formaldehyde dehydrogenase%3B gs-fdh%3B faldh%3B gd-faldh	gene	gene2818	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0847
trd_A0848	trd_A0848		trd_A0848	831871	832017	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2819	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0848
trd_A0849	trd_A0849		trd_A0849	832346	832567	-	blasticidin-S deaminase		gene	gene2820	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0849
trd_A0850	trd_A0850		trd_A0850	832572	832733	-	blasticidin-S deaminase		gene	gene2821	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0850
trd_A0851	trd_A0851		trd_A0851	833192	834496	+	peptide amidase	identified by match to protein family HMM PF01425	gene	gene2822	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0851
trd_A0852	trd_A0852	dcd	dcd	834523	835038	+	deoxycytidine triphosphate deaminase	identified by match to protein family HMM TIGR02274	gene	gene2823	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0852
trd_A0853	trd_A0853		trd_A0853	835180	836145	-	2-keto-3-deoxygluconate kinase	identified by match to protein family HMM PF00294	gene	gene2824	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0853
trd_A0854	trd_A0854	dehII	dehII	836154	836822	-	haloacid dehalogenase%2C type II	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01428%3B match to protein family HMM TIGR01493	gene	gene2825	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0854
trd_A0855	trd_A0855		trd_A0855	837031	838755	+	conserved hypothetical protein	identified by match to protein family HMM PF01436	gene	gene2826	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0855
trd_A0856	trd_A0856	proC	proC	838761	839648	-	pyrroline-5-carboxylate reductase	identified by match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112	gene	gene2827	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0856
trd_A0857	trd_A0857		trd_A0857	839660	840460	-	creatinine amidohydrolase	identified by match to protein family HMM PF02633	gene	gene2828	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0857
trd_A0858	trd_A0858		trd_A0858	842362	842835	-	conserved hypothetical protein		gene	gene2830	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0858
trd_A0859	trd_A0859		trd_A0859	840539	842365	+	glycosyl hydrolase%2C family 15	identified by match to protein family HMM PF00723	gene	gene2829	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0859
trd_A0860	trd_A0860		trd_A0860	842892	843236	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2831	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0860
trd_A0861	trd_A0861	wbbL	wbbL	843240	844220	-	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535	gene	gene2832	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0861
trd_A0862	trd_A0862		trd_A0862	844180	846096	-	peptidase domain protein		gene	gene2833	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0862
trd_A0863	trd_A0863		trd_A0863	846141	846287	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2834	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0863
trd_A0864	trd_A0864		trd_A0864	846500	846688	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2836	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0864
trd_A0865	trd_A0865		trd_A0865	846409	846525	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2835	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0865
trd_A0866	trd_A0866	argG	argG	846692	847915	+	argininosuccinate synthase	identified by match to protein family HMM PF00764%3B match to protein family HMM TIGR00032	gene	gene2837	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0866
trd_A0867	trd_A0867		trd_A0867	847995	848189	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2838	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0867
trd_A0868	trd_A0868		trd_A0868	848445	849521	-	Catalytic Domain Of MutyY	identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730	gene	gene2839	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0868
trd_A0869	trd_A0869	miaA	miaA	849676	850665	-	tRNA delta(2)-isopentenylpyrophosphate transferase	identified by match to protein family HMM PF01715%3B match to protein family HMM TIGR00174	gene	gene2840	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0869
trd_A0870	trd_A0870		trd_A0870	850741	851793	+	aminodeoxychorismate lyase	identified by match to protein family HMM PF02618%3B match to protein family HMM TIGR00247	gene	gene2841	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0870
trd_A0871	trd_A0871	aroE	aroE	851790	852629	+	shikimate 5-dehydrogenase	identified by match to protein family HMM PF01488%3B match to protein family HMM PF08501%3B match to protein family HMM TIGR00507	gene	gene2842	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0871
trd_A0872	trd_A0872		trd_A0872	852701	853426	+	prepilin peptidase	identified by match to protein family HMM PF01478	gene	gene2843	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0872
trd_A0873	trd_A0873		trd_A0873	853726	855096	-	stage V sporulation protein R	identified by match to protein family HMM PF04293	gene	gene2844	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0873
trd_A0874	trd_A0874	yhbH	yhbH	855089	856258	-	sporulation protein YhbH	identified by match to protein family HMM PF04285%3B match to protein family HMM TIGR02877	gene	gene2845	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0874
trd_A0875	trd_A0875		trd_A0875	856274	858325	-	serine protein kinase	identified by match to protein family HMM PF06798%3B match to protein family HMM PF08298	gene	gene2846	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0875
trd_A0876	trd_A0876		trd_A0876	858555	858749	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2847	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0876
trd_A0877	trd_A0877		trd_A0877	859094	860152	+	endoglucanase M (EGM) (Endo-1%2C4-beta-glucanase)(Cellulase M)	identified by match to protein family HMM PF01546%3B match to protein family HMM PF02127%3B match to protein family HMM PF05343	gene	gene2848	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0877
trd_A0878	trd_A0878		trd_A0878	860182	861849	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2849	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0878
trd_A0879	trd_A0879		trd_A0879	861867	862814	+	uroporphyrinogen decarboxylase		gene	gene2850	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0879
trd_A0880	trd_A0880		trd_A0880	863040	864236	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2851	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0880
trd_A0881	trd_A0881		trd_A0881	864236	865240	-	tyrosine recombinase	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899	gene	gene2852	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0881
trd_A0882	trd_A0882		trd_A0882	865473	866210	+	conserved hypothetical protein		gene	gene2853	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0882
trd_A0883	trd_A0883		trd_A0883	866262	866768	-	two component transcriptional regulator%2C winged helix family	identified by match to protein family HMM PF00072	gene	gene2854	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0883
trd_A0884	trd_A0884		trd_A0884	867350	867646	-	conserved hypothetical protein		gene	gene2855	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0884
trd_A0885	trd_A0885		trd_A0885	867736	867897	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2856	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0885
trd_A0886	trd_A0886		trd_A0886	867956	868171	-	conserved domain protein	identified by match to protein family HMM PF00403	gene	gene2857	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0886
trd_A0887	trd_A0887		trd_A0887	868521	868649	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2858	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0887
trd_A0888	trd_A0888	ftsH	ftsH	870182	872080	-	cell division protein FtsH	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434	gene	gene2860	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0888
trd_A0889	trd_A0889		trd_A0889	868687	870198	+	protein of unknown function%2C hydrolase family protein%2C putative		gene	gene2859	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0889
trd_A0890	trd_A0890		trd_A0890	872093	872713	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2861	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0890
trd_A0891	trd_A0891		trd_A0891	872896	873060	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2862	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0891
trd_A0892	trd_A0892		trd_A0892	873062	874471	-	FAD dependent oxidoreductase	identified by match to protein family HMM PF01266	gene	gene2863	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0892
trd_A0893	trd_A0893		trd_A0893	875434	875826	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2864	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0893
trd_A0894	trd_A0894		trd_A0894	875886	876431	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2865	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0894
trd_A0895	trd_A0895		trd_A0895	876462	877679	-	aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155	gene	gene2866	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0895
trd_A0896	trd_A0896		trd_A0896	877733	877885	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2867	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0896
trd_A0897	trd_A0897		trd_A0897	878621	879880	-	major facilitator superfamily MFS_1	identified by match to protein family HMM PF05977%3B match to protein family HMM PF07690	gene	gene2868	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0897
trd_A0898	trd_A0898		trd_A0898	880408	881268	+	polysaccharide deacetylase	identified by match to protein family HMM PF01522	gene	gene2869	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0898
trd_A0899	trd_A0899	cofH	cofH	881273	882598	-	7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase%2C CofH subunit	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00423%3B match to protein family HMM TIGR03551	gene	gene2870	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0899
trd_A0900	trd_A0900	cofG	cofG	882598	883812	-	7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase%2C CofG subunit	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR03550	gene	gene2871	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0900
trd_A0901	trd_A0901		trd_A0901	884052	885422	+	conserved hypothetical protein		gene	gene2872	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0901
trd_A0902	trd_A0902		trd_A0902	885664	886044	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2873	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0902
trd_A0903	trd_A0903		trd_A0903	886050	886175	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2874	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0903
trd_A0904	trd_A0904		trd_A0904	886905	887660	-	D-aminopeptidase%2C putative		gene	gene2876	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0904
trd_A0905	trd_A0905		trd_A0905	886398	886910	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2875	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0905
trd_A0906	trd_A0906		trd_A0906	887828	889141	-	receptor family ligand binding region	identified by match to protein family HMM PF01094	gene	gene2877	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0906
trd_A0907	trd_A0907		trd_A0907	889355	889660	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2878	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0907
trd_A0908	trd_A0908	pepF	pepF	889910	891733	+	oligoendopeptidase F	identified by match to protein family HMM PF01432%3B match to protein family HMM PF08439%3B match to protein family HMM TIGR00181	gene	gene2879	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0908
trd_A0909	trd_A0909		trd_A0909	891815	892588	-	menaquinone biosynthesis methyltransferase UbiE	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242%3B match to protein family HMM TIGR01934	gene	gene2880	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0909
trd_A0910	trd_A0910		trd_A0910	892614	893204	-	conserved hypothetical protein	identified by match to protein family HMM PF01161%3B match to protein family HMM TIGR00481	gene	gene2881	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0910
trd_A0911	trd_A0911		trd_A0911	893315	893434	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2882	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0911
trd_A0912	trd_A0912		trd_A0912	893478	894059	+	flavin-nucleotide-binding protein	identified by match to protein family HMM PF01243	gene	gene2883	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0912
trd_A0913	trd_A0913		trd_A0913	894085	894489	-	conserved hypothetical protein		gene	gene2884	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0913
trd_A0914	trd_A0914		trd_A0914	894673	895593	+	protein of unknown function DUF6%2C transmembrane	identified by match to protein family HMM PF00892	gene	gene2885	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0914
trd_A0915	trd_A0915	gmd	gmd	895641	896696	+	GDP-mannose 4%2C6-dehydratase	identified by match to protein family HMM PF01370%3B match to protein family HMM TIGR01472	gene	gene2886	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0915
trd_A0916	trd_A0916		trd_A0916	896992	897783	-	transcriptional regulater GntR family protein	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene2887	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0916
trd_A0917	trd_A0917		trd_A0917	897928	898926	+	aldolase	identified by match to protein family HMM PF00701	gene	gene2888	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0917
trd_A0918	trd_A0918		trd_A0918	899067	899198	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2889	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0918
trd_A0919	trd_A0919		trd_A0919	899218	900711	+	toluene-4-monooxygenase system protein A	identified by match to protein family HMM PF02332%3B match to protein family HMM PF04945	gene	gene2890	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0919
trd_A0920	trd_A0920		trd_A0920	900787	901035	+	toluene-4-monooxygenase system protein B	identified by match to protein family HMM PF06234	gene	gene2891	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0920
trd_A0921	trd_A0921		trd_A0921	901025	901390	+	toluene-4-monooxygenase system protein C	identified by match to protein family HMM PF00355	gene	gene2892	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0921
trd_A0922	trd_A0922		trd_A0922	901408	901719	+	toluene-4-monooxygenase system protein D	identified by match to protein family HMM PF02406	gene	gene2893	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0922
trd_A0923	trd_A0923		trd_A0923	901733	902740	+	toluene-4-monooxygenase system protein E	identified by match to protein family HMM PF02332	gene	gene2894	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0923
trd_A0924	trd_A0924		trd_A0924	902737	903744	+	xylene monooxygenase electron transfer subunit	identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene2895	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0924
trd_A0925	trd_A0925		trd_A0925	903815	904264	+	conserved hypothetical protein		gene	gene2896	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0925
trd_A0926	trd_A0926		trd_A0926	904778	905611	+	2%2C3-dihydroxy-2%2C3-dihydro-phenylpropionate dehydrogenase	identified by match to protein family HMM PF00106	gene	gene2897	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0926
trd_A0927	trd_A0927		trd_A0927	905627	906742	+	epoxide hydrolase 1 (Microsomal epoxide hydrolase)(Epoxide hydratase)	identified by match to protein family HMM PF00561%3B match to protein family HMM PF06441	gene	gene2898	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0927
trd_A0928	trd_A0928		trd_A0928	906758	907930	+	pigment production hydroxylase	identified by match to protein family HMM PF08028	gene	gene2899	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0928
trd_A0929	trd_A0929		trd_A0929	907943	909493	+	4-hydroxyphenylacetate 3-monooxygenase oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase)	identified by match to protein family HMM PF03241	gene	gene2900	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0929
trd_A0930	trd_A0930		trd_A0930	909503	910360	+	2-hydroxy-6-oxo-6-phenylhexa-2%2C4-dienoate hydrolase	identified by match to protein family HMM PF00561	gene	gene2901	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0930
trd_A0931	trd_A0931		trd_A0931	910397	911875	+	pyoverdin chromophore biosynthetic protein PvcC	identified by match to protein family HMM PF03241	gene	gene2902	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0931
trd_A0932	trd_A0932		trd_A0932	911872	912735	+	short chain dehydrogenase	identified by match to protein family HMM PF00106	gene	gene2903	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0932
trd_A0933	trd_A0933		trd_A0933	912687	913187	+	cupin 2%2C conserved barrel domain protein	identified by match to protein family HMM PF07883	gene	gene2904	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0933
trd_A0934	trd_A0934		trd_A0934	913237	914136	+	catechol 2%2C3-dioxygenase	identified by match to protein family HMM PF00903	gene	gene2905	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0934
trd_A0935	trd_A0935	hpaD	hpaD	914189	915154	+	3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase	identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR02295	gene	gene2906	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0935
trd_A0936	trd_A0936		trd_A0936	915217	917241	-	nerd domain protein		gene	gene2907	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0936
trd_A0937	trd_A0937		trd_A0937	917384	917518	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2908	http://www.ncbi.nlm.nih.gov/gene/?term=trd_A0937