trd_0502 55cd5f3141c49a37a885aece80eac55a 382 PIRSF PIRSF006769 3 375 7.3E-135 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 Pfam PF01872 RibD C-terminal domain 152 368 2.5E-55 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 93 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 Gene3D G3DSA:3.40.430.10 147 374 1.9E-77 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 151 372 3.3E-65 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 SUPERFAMILY SSF53597 151 371 1.57E-63 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 12 368 1.7E-112 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 Gene3D G3DSA:3.40.140.10 2 146 1.0E-47 T 13-10-2018 trd_0502 55cd5f3141c49a37a885aece80eac55a 382 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 104 5.2E-21 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain trd_0502 55cd5f3141c49a37a885aece80eac55a 382 SUPERFAMILY SSF53927 8 149 1.49E-47 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 Gene3D G3DSA:3.40.50.300 2 332 1.1E-105 T 13-10-2018 trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 300 7.3E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 SUPERFAMILY SSF52540 33 319 4.94E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 SMART SM00382 33 233 2.4E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 320 4.1E-28 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1629 2ed15e6db694adc1c08ec3363ebacf08 341 Pfam PF00005 ABC transporter 25 183 2.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0800 23b2e6b479693bc1279ad00b519f7e46 109 SMART SM00748 1 100 1.8E-12 T 13-10-2018 IPR007842 HEPN domain trd_A0800 23b2e6b479693bc1279ad00b519f7e46 109 Pfam PF05168 HEPN domain 2 105 4.9E-23 T 13-10-2018 IPR007842 HEPN domain trd_A0800 23b2e6b479693bc1279ad00b519f7e46 109 SUPERFAMILY SSF81593 4 106 2.75E-29 T 13-10-2018 trd_A0800 23b2e6b479693bc1279ad00b519f7e46 109 Gene3D G3DSA:1.20.120.330 1 108 7.7E-27 T 13-10-2018 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 298 2.5E-125 T 13-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 SUPERFAMILY SSF48179 165 301 1.29E-41 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 SMART SM01350 167 306 8.6E-5 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 Gene3D G3DSA:1.10.1040.10 166 297 3.2E-52 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 Gene3D G3DSA:3.40.50.720 1 165 7.3E-53 T 13-10-2018 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 9.0E-27 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 9.0E-27 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 156 184 9.0E-27 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 231 258 9.0E-27 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 154 5.0E-43 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 SUPERFAMILY SSF51735 1 155 1.44E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1142 c52bb0b606fadb5365826237813c2ff9 307 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 167 277 2.4E-21 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 235 247 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 trd_1142 c52bb0b606fadb5365826237813c2ff9 307 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 trd_A0857 51288712dac24181814e605b17b40363 266 Pfam PF02633 Creatinine amidohydrolase 11 246 1.7E-67 T 13-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 trd_A0857 51288712dac24181814e605b17b40363 266 SUPERFAMILY SSF102215 8 249 1.01E-67 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 trd_A0857 51288712dac24181814e605b17b40363 266 Gene3D G3DSA:3.40.50.10310 2 252 1.6E-70 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF09106 Elongation factor SelB, winged helix 454 508 7.0E-13 T 13-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:1.10.10.2770 448 569 2.0E-23 T 13-10-2018 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF52540 3 172 2.84E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF09107 Elongation factor SelB, winged helix 584 627 2.2E-19 T 13-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:3.40.50.300 4 174 2.8E-50 T 13-10-2018 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 7 626 1.4E-106 T 13-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:2.40.30.10 179 298 1.9E-30 T 13-10-2018 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF50465 268 366 7.67E-24 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal trd_0508 4c682cfee8bf20818af83da564d28aa3 630 PRINTS PR00315 GTP-binding elongation factor signature 75 86 6.2E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 PRINTS PR00315 GTP-binding elongation factor signature 59 69 6.2E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 PRINTS PR00315 GTP-binding elongation factor signature 7 20 6.2E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF50447 179 269 4.32E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF00009 Elongation factor Tu GTP binding domain 7 170 7.7E-32 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF03144 Elongation factor Tu domain 2 196 263 7.9E-10 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 trd_0508 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:1.10.10.10 571 628 3.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0508 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF46785 447 513 2.18E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0508 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF46785 575 627 8.82E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1894 fd51520b1a676629320f28f908286c0d 411 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 103 117 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 trd_1894 fd51520b1a676629320f28f908286c0d 411 Gene3D G3DSA:3.40.50.1100 61 386 3.1E-117 T 13-10-2018 trd_1894 fd51520b1a676629320f28f908286c0d 411 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 76 380 4.6E-77 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_1894 fd51520b1a676629320f28f908286c0d 411 Gene3D G3DSA:3.40.50.1100 112 208 3.1E-117 T 13-10-2018 trd_1894 fd51520b1a676629320f28f908286c0d 411 SUPERFAMILY SSF53686 5 387 4.85E-92 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_1894 fd51520b1a676629320f28f908286c0d 411 TIGRFAM TIGR00260 thrC: threonine synthase 60 387 9.4E-55 T 13-10-2018 IPR004450 Threonine synthase-like trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 Pfam PF00326 Prolyl oligopeptidase family 448 649 1.5E-47 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 SUPERFAMILY SSF53474 394 648 3.15E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 Pfam PF07676 WD40-like Beta Propeller Repeat 73 106 2.2E-8 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 Pfam PF07676 WD40-like Beta Propeller Repeat 119 139 0.039 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 Gene3D G3DSA:3.40.50.1820 386 660 1.4E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 SUPERFAMILY SSF82171 27 368 4.58E-39 T 13-10-2018 trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 Gene3D G3DSA:2.120.10.30 164 369 1.2E-13 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_A0567 b07b9a5826b4fdc8d94b5620db5ff177 667 Gene3D G3DSA:2.120.10.30 8 163 5.4E-28 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_0031 ff7cee361295b46a3f31773d36599beb 507 SUPERFAMILY SSF53448 54 356 1.19E-51 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0031 ff7cee361295b46a3f31773d36599beb 507 Gene3D G3DSA:3.90.550.10 48 277 2.2E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0031 ff7cee361295b46a3f31773d36599beb 507 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 54 488 7.2E-132 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 trd_0031 ff7cee361295b46a3f31773d36599beb 507 SUPERFAMILY SSF51161 300 497 3.54E-51 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily trd_0031 ff7cee361295b46a3f31773d36599beb 507 Pfam PF12804 MobA-like NTP transferase domain 55 179 1.9E-20 T 13-10-2018 IPR025877 MobA-like NTP transferase trd_0031 ff7cee361295b46a3f31773d36599beb 507 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 52 501 33.202 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 trd_0031 ff7cee361295b46a3f31773d36599beb 507 Gene3D G3DSA:2.160.10.10 278 502 1.7E-66 T 13-10-2018 trd_0031 ff7cee361295b46a3f31773d36599beb 507 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 444 478 5.8E-6 T 13-10-2018 IPR001451 Hexapeptide repeat trd_0031 ff7cee361295b46a3f31773d36599beb 507 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 366 400 1.3E-6 T 13-10-2018 IPR001451 Hexapeptide repeat trd_0031 ff7cee361295b46a3f31773d36599beb 507 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 316 349 2.8E-4 T 13-10-2018 IPR001451 Hexapeptide repeat trd_0840 5c73ba88f13c91e4e675a521366c3c7f 317 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 301 3.3E-55 T 13-10-2018 IPR016040 NAD(P)-binding domain trd_0840 5c73ba88f13c91e4e675a521366c3c7f 317 Gene3D G3DSA:3.90.25.10 182 305 1.8E-107 T 13-10-2018 trd_0840 5c73ba88f13c91e4e675a521366c3c7f 317 SUPERFAMILY SSF51735 2 308 3.96E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0840 5c73ba88f13c91e4e675a521366c3c7f 317 Gene3D G3DSA:3.40.50.720 2 292 1.8E-107 T 13-10-2018 trd_0756 728e0e614a4009bd5a5345a0d71c447f 378 Pfam PF00953 Glycosyl transferase family 4 95 261 1.5E-38 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 2.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 2.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 SUPERFAMILY SSF46689 13 95 1.9E-22 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 Gene3D G3DSA:1.10.10.60 4 66 1.4E-21 T 13-10-2018 trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 SUPERFAMILY SSF48498 91 201 8.66E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 1.6E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 Pfam PF08359 YsiA-like protein, C-terminal region 78 199 4.3E-6 T 13-10-2018 IPR013570 Transcription regulator YsiA, C-terminal trd_A0263 0db442f24c6f67194b3d8d19a315e9a5 216 Gene3D G3DSA:1.10.357.10 67 204 3.1E-27 T 13-10-2018 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 SUPERFAMILY SSF50615 10 83 1.0E-26 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 139 351 1.5E-68 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 10 469 6.8E-250 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 Gene3D G3DSA:2.40.10.170 8 83 5.6E-33 T 13-10-2018 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 SMART SM00382 151 336 1.3E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 SUPERFAMILY SSF52540 85 356 1.48E-94 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 Gene3D G3DSA:1.10.1140.10 354 473 5.8E-59 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 13 81 1.4E-24 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 342 351 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 Gene3D G3DSA:3.40.50.300 84 353 1.9E-113 T 13-10-2018 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 Hamap MF_01347 ATP synthase subunit beta [atpB]. 8 469 59.204 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 trd_1228 5ea3dbc4b6045808ad0c4d3439169cc6 473 SUPERFAMILY SSF47917 354 470 7.59E-53 T 13-10-2018 trd_1501 373872aa7d392d36398b0e91807392fd 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 178 2.8E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1501 373872aa7d392d36398b0e91807392fd 192 SUPERFAMILY SSF88946 5 103 1.44E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_1501 373872aa7d392d36398b0e91807392fd 192 SUPERFAMILY SSF88659 107 180 1.64E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1501 373872aa7d392d36398b0e91807392fd 192 Gene3D G3DSA:1.10.10.10 113 183 1.2E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1501 373872aa7d392d36398b0e91807392fd 192 Gene3D G3DSA:1.10.1740.10 3 112 2.0E-25 T 13-10-2018 trd_1501 373872aa7d392d36398b0e91807392fd 192 Pfam PF08281 Sigma-70, region 4 125 174 1.5E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1501 373872aa7d392d36398b0e91807392fd 192 ProSitePatterns PS00622 LuxR-type HTH domain signature. 147 174 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1501 373872aa7d392d36398b0e91807392fd 192 Pfam PF04542 Sigma-70 region 2 28 95 6.2E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_1601 78e4682d5e1c0aab71b7f1b721a883e8 367 SUPERFAMILY SSF102405 80 286 6.11E-44 T 13-10-2018 trd_1601 78e4682d5e1c0aab71b7f1b721a883e8 367 Gene3D G3DSA:3.40.50.450 1 286 8.0E-102 T 13-10-2018 trd_1601 78e4682d5e1c0aab71b7f1b721a883e8 367 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 71 286 5.2E-79 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 trd_1601 78e4682d5e1c0aab71b7f1b721a883e8 367 Pfam PF02481 DNA recombination-mediator protein A 72 276 1.8E-78 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 trd_1601 78e4682d5e1c0aab71b7f1b721a883e8 367 Gene3D G3DSA:1.10.10.10 287 357 4.2E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 12 1403 17.88 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:1.10.1790.20 1243 1341 1.6E-51 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Pfam PF04998 RNA polymerase Rpb1, domain 5 918 1342 1.3E-68 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Pfam PF00623 RNA polymerase Rpb1, domain 2 521 661 2.1E-34 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:1.10.274.100 666 733 4.3E-20 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:1.10.132.30 808 942 2.2E-58 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Pfam PF04983 RNA polymerase Rpb1, domain 3 666 811 1.3E-26 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Pfam PF04997 RNA polymerase Rpb1, domain 1 18 519 8.3E-87 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:2.40.50.100 1119 1179 2.1E-13 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:1.10.40.90 551 593 2.5E-22 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 SUPERFAMILY SSF64484 17 1394 0.0 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Pfam PF05000 RNA polymerase Rpb1, domain 4 847 915 4.0E-15 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 SMART SM00663 412 691 7.5E-170 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:1.10.150.390 1343 1402 2.3E-28 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:1.10.274.100 734 807 4.1E-22 T 13-10-2018 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 330 1178 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0990 8bf436ac5d0fb09edc428f2328b529c5 1459 Gene3D G3DSA:2.40.50.100 1186 1242 1.6E-51 T 13-10-2018 trd_A0622 c03a2ee215ba95261e8c2b04e01dbd13 374 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 19 369 4.2E-103 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 trd_A0622 c03a2ee215ba95261e8c2b04e01dbd13 374 Pfam PF01180 Dihydroorotate dehydrogenase 65 358 1.3E-66 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 trd_A0622 c03a2ee215ba95261e8c2b04e01dbd13 374 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 100 119 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 trd_A0622 c03a2ee215ba95261e8c2b04e01dbd13 374 Gene3D G3DSA:3.20.20.70 15 353 1.1E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0622 c03a2ee215ba95261e8c2b04e01dbd13 374 SUPERFAMILY SSF51395 16 373 5.19E-88 T 13-10-2018 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 Pfam PF13288 DXP reductoisomerase C-terminal domain 257 372 2.4E-39 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 377 45.971 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 Gene3D G3DSA:1.10.1740.10 296 380 2.5E-29 T 13-10-2018 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 378 6.8E-134 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 SUPERFAMILY SSF69055 286 380 7.59E-30 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 125 2.1E-37 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 SUPERFAMILY SSF51735 5 143 8.61E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 PIRSF PIRSF006205 3 384 1.0E-142 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 140 223 1.8E-37 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 Gene3D G3DSA:3.40.50.720 1 143 5.2E-46 T 13-10-2018 trd_1005 cb612f1ddd133cdd145eec66e83f77ee 385 SUPERFAMILY SSF55347 119 258 5.23E-54 T 13-10-2018 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 SUPERFAMILY SSF53187 174 486 2.79E-110 T 13-10-2018 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 178 482 2.4E-113 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 Gene3D G3DSA:3.40.630.10 159 492 1.8E-127 T 13-10-2018 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 22 143 1.6E-13 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 339 346 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 SUPERFAMILY SSF52949 17 176 8.24E-17 T 13-10-2018 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 4 491 34.854 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 363 378 4.5E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 313 334 4.5E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 335 355 4.5E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 276 297 4.5E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 254 271 4.5E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 trd_0513 f5b28759d48522d4fb4454b975ce301f 497 Gene3D G3DSA:3.40.220.10 4 157 3.7E-22 T 13-10-2018 trd_0802 a830d3961634a121a25f69166639d48d 265 Gene3D G3DSA:3.40.50.150 64 265 4.4E-81 T 13-10-2018 trd_0802 a830d3961634a121a25f69166639d48d 265 Pfam PF01479 S4 domain 7 48 2.7E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0802 a830d3961634a121a25f69166639d48d 265 SUPERFAMILY SSF55174 6 56 2.69E-10 T 13-10-2018 trd_0802 a830d3961634a121a25f69166639d48d 265 Gene3D G3DSA:3.10.290.10 2 63 2.3E-20 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 trd_0802 a830d3961634a121a25f69166639d48d 265 SMART SM00363 6 70 1.9E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0802 a830d3961634a121a25f69166639d48d 265 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 8 235 9.8E-75 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 trd_0802 a830d3961634a121a25f69166639d48d 265 PIRSF PIRSF005578 1 259 1.2E-103 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 trd_0802 a830d3961634a121a25f69166639d48d 265 Pfam PF01728 FtsJ-like methyltransferase 61 240 2.4E-22 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 trd_0802 a830d3961634a121a25f69166639d48d 265 SUPERFAMILY SSF53335 57 257 6.23E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0115 4b5ef21d49ca1eae34881d1de0762ea1 110 Pfam PF01906 Putative heavy-metal-binding 6 110 2.2E-40 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 trd_0115 4b5ef21d49ca1eae34881d1de0762ea1 110 SUPERFAMILY SSF117782 6 110 5.49E-38 T 13-10-2018 IPR035439 UPF0145 domain superfamily trd_0115 4b5ef21d49ca1eae34881d1de0762ea1 110 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 5 110 25.552 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 trd_0115 4b5ef21d49ca1eae34881d1de0762ea1 110 Gene3D G3DSA:3.30.110.70 6 110 1.0E-44 T 13-10-2018 trd_0644 48b690da35b326a987c40e353f3ae833 556 SUPERFAMILY SSF52016 373 551 1.57E-59 T 13-10-2018 trd_0644 48b690da35b326a987c40e353f3ae833 556 Gene3D G3DSA:3.50.30.80 373 522 5.2E-54 T 13-10-2018 trd_0644 48b690da35b326a987c40e353f3ae833 556 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 551 4.9E-209 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 trd_0644 48b690da35b326a987c40e353f3ae833 556 Pfam PF00920 Dehydratase family 31 548 7.4E-204 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 trd_0644 48b690da35b326a987c40e353f3ae833 556 SUPERFAMILY SSF143975 1 372 1.7E-125 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 trd_0644 48b690da35b326a987c40e353f3ae833 556 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 551 44.92 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 trd_0644 48b690da35b326a987c40e353f3ae833 556 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 119 129 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 trd_0644 48b690da35b326a987c40e353f3ae833 556 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 459 470 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 trd_1677 9f4309882413798ea981ac1c273bbb39 536 SUPERFAMILY SSF52029 189 377 8.2E-33 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily trd_1677 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 27 53 2.3E-20 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1677 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 86 113 2.3E-20 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1677 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 271 294 2.3E-20 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1677 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 401 422 2.3E-20 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1677 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 353 378 2.3E-20 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1677 9f4309882413798ea981ac1c273bbb39 536 Pfam PF00118 TCP-1/cpn60 chaperonin family 225 525 4.4E-22 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 trd_1677 9f4309882413798ea981ac1c273bbb39 536 Pfam PF00118 TCP-1/cpn60 chaperonin family 24 143 1.1E-15 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 trd_1677 9f4309882413798ea981ac1c273bbb39 536 SUPERFAMILY SSF48592 5 526 7.72E-40 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily trd_1677 9f4309882413798ea981ac1c273bbb39 536 Gene3D G3DSA:1.10.560.10 8 525 2.1E-124 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily trd_1677 9f4309882413798ea981ac1c273bbb39 536 Gene3D G3DSA:3.30.260.10 139 413 2.1E-124 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily trd_1677 9f4309882413798ea981ac1c273bbb39 536 Gene3D G3DSA:3.50.7.10 194 375 2.1E-124 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily trd_0118 7fd94e0db6ba5a121c2b7eb07eb1335e 145 PIRSF PIRSF003230 2 144 9.1E-25 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 trd_0118 7fd94e0db6ba5a121c2b7eb07eb1335e 145 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 16 33 - T 13-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 trd_0118 7fd94e0db6ba5a121c2b7eb07eb1335e 145 SUPERFAMILY SSF54637 6 142 2.3E-42 T 13-10-2018 IPR029069 HotDog domain superfamily trd_0118 7fd94e0db6ba5a121c2b7eb07eb1335e 145 Pfam PF13279 Thioesterase-like superfamily 17 139 1.5E-14 T 13-10-2018 trd_0118 7fd94e0db6ba5a121c2b7eb07eb1335e 145 Gene3D G3DSA:3.10.129.10 1 143 3.8E-41 T 13-10-2018 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 Hamap MF_01685 Ferredoxin--NADP reductase. 12 335 38.9 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 SUPERFAMILY SSF51905 13 317 1.48E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 15 34 1.3E-18 T 13-10-2018 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 162 180 1.3E-18 T 13-10-2018 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 245 261 1.3E-18 T 13-10-2018 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 1.3E-18 T 13-10-2018 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 Gene3D G3DSA:3.50.50.60 12 311 1.5E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 14 307 3.1E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 14 36 2.2E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 119 127 2.2E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 158 182 2.2E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0326 628704d3b4bd7d3027f7b73eb66a1cad 346 Gene3D G3DSA:3.50.50.60 134 252 1.5E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0267 00c57425e81a79401df878fad8184fbf 568 SUPERFAMILY SSF55781 29 198 3.27E-34 T 13-10-2018 trd_0267 00c57425e81a79401df878fad8184fbf 568 SMART SM00065 46 195 6.9E-23 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_0267 00c57425e81a79401df878fad8184fbf 568 SMART SM00065 220 354 1.8E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_0267 00c57425e81a79401df878fad8184fbf 568 SMART SM00387 460 559 1.7E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_0267 00c57425e81a79401df878fad8184fbf 568 Pfam PF13185 GAF domain 45 186 7.6E-20 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_0267 00c57425e81a79401df878fad8184fbf 568 Gene3D G3DSA:3.30.450.40 28 195 6.4E-45 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_0267 00c57425e81a79401df878fad8184fbf 568 Gene3D G3DSA:3.30.565.10 422 561 2.7E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_0267 00c57425e81a79401df878fad8184fbf 568 SMART SM00911 366 443 0.0013 T 13-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 trd_0267 00c57425e81a79401df878fad8184fbf 568 SUPERFAMILY SSF55874 422 555 8.91E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_0267 00c57425e81a79401df878fad8184fbf 568 Pfam PF07568 Histidine kinase 366 437 5.2E-16 T 13-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain trd_0267 00c57425e81a79401df878fad8184fbf 568 SUPERFAMILY SSF55781 202 367 8.98E-16 T 13-10-2018 trd_0267 00c57425e81a79401df878fad8184fbf 568 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 556 1.9E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_0267 00c57425e81a79401df878fad8184fbf 568 Gene3D G3DSA:3.30.450.40 196 356 7.4E-18 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Gene3D G3DSA:3.40.50.1000 323 680 7.5E-275 T 13-10-2018 IPR023214 HAD superfamily trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 SMART SM00831 6 79 1.5E-32 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Pfam PF00689 Cation transporting ATPase, C-terminus 719 891 4.4E-40 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Gene3D G3DSA:1.20.1110.10 57 890 7.5E-275 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 328 334 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 667 692 1.0E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 490 508 1.0E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 635 651 1.0E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 607 623 1.0E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Pfam PF00122 E1-E2 ATPase 116 306 5.9E-50 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Gene3D G3DSA:3.40.1110.10 336 540 7.5E-275 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Pfam PF00690 Cation transporter/ATPase, N-terminus 7 73 2.7E-21 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Pfam PF00702 haloacid dehalogenase-like hydrolase 325 648 4.2E-24 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 SUPERFAMILY SSF81665 6 897 3.4E-119 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 SUPERFAMILY SSF56784 325 735 2.8E-58 T 13-10-2018 IPR036412 HAD-like superfamily trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 86 347 3.4E-41 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 601 724 4.4E-32 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 555 565 8.6E-40 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 533 544 8.6E-40 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 671 8.6E-40 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 635 654 8.6E-40 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 164 178 8.6E-40 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 326 340 8.6E-40 T 13-10-2018 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 SUPERFAMILY SSF81660 333 537 6.87E-43 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 SUPERFAMILY SSF81653 116 223 6.28E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_A0310 878bab6810ed7a3fd1687eb47999f551 926 Gene3D G3DSA:2.70.150.10 24 229 7.5E-275 T 13-10-2018 trd_A0782 d6479f2daaabfe6832be6ebf2ace264b 289 Pfam PF04203 Sortase family 146 288 4.9E-24 T 13-10-2018 IPR005754 Sortase family trd_A0782 d6479f2daaabfe6832be6ebf2ace264b 289 Gene3D G3DSA:2.40.260.10 111 289 5.3E-36 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0782 d6479f2daaabfe6832be6ebf2ace264b 289 SUPERFAMILY SSF63817 138 288 1.1E-25 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0782 d6479f2daaabfe6832be6ebf2ace264b 289 TIGRFAM TIGR01076 sortase_fam: sortase 146 286 4.7E-15 T 13-10-2018 IPR005754 Sortase family trd_1176 af79e0efff5a672e46a3d705dc43b382 321 Gene3D G3DSA:1.10.150.650 125 192 3.1E-53 T 13-10-2018 trd_1176 af79e0efff5a672e46a3d705dc43b382 321 SMART SM00481 29 94 3.2E-15 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal trd_1176 af79e0efff5a672e46a3d705dc43b382 321 Gene3D G3DSA:3.20.20.140 29 273 3.1E-53 T 13-10-2018 trd_1176 af79e0efff5a672e46a3d705dc43b382 321 SUPERFAMILY SSF89550 29 280 8.54E-41 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_A0006 d9a070fe176c7bdebf10f648fe28bd7b 454 SUPERFAMILY SSF103473 43 449 1.96E-30 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0006 d9a070fe176c7bdebf10f648fe28bd7b 454 Pfam PF07690 Major Facilitator Superfamily 270 449 3.0E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0006 d9a070fe176c7bdebf10f648fe28bd7b 454 Gene3D G3DSA:1.20.1250.20 259 452 1.8E-21 T 13-10-2018 trd_1850 642f5eb5d9e5343ec8289b4ae87a97c6 295 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 174 271 1.5E-4 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_1850 642f5eb5d9e5343ec8289b4ae87a97c6 295 Gene3D G3DSA:3.10.180.10 10 138 5.5E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1850 642f5eb5d9e5343ec8289b4ae87a97c6 295 ProSitePatterns PS00934 Glyoxalase I signature 1. 177 198 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 trd_1850 642f5eb5d9e5343ec8289b4ae87a97c6 295 Gene3D G3DSA:3.10.180.10 172 295 3.7E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1850 642f5eb5d9e5343ec8289b4ae87a97c6 295 SUPERFAMILY SSF54593 166 294 1.09E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1850 642f5eb5d9e5343ec8289b4ae87a97c6 295 SUPERFAMILY SSF54593 6 161 4.16E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 9 112 28.687 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 125 208 6.9E-29 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 35 107 1.6E-33 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 122 208 19.844 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 127 211 1.2E-16 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Gene3D G3DSA:3.10.20.400 4 99 2.5E-37 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Gene3D G3DSA:1.10.287.1080 121 215 6.2E-29 T 13-10-2018 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 58 107 2.0E-16 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 SUPERFAMILY SSF141734 10 113 1.96E-44 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 11 213 35.576 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 trd_0112 cbef63f0f6a4404ebd846fa0a24eb988 218 SUPERFAMILY SSF101386 123 208 4.11E-24 T 13-10-2018 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 SUPERFAMILY SSF46785 4 71 1.45E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 Pfam PF01726 LexA DNA binding domain 3 66 1.5E-17 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 Hamap MF_00015 LexA repressor [lexA]. 4 213 31.181 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 Gene3D G3DSA:1.10.10.10 4 69 1.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 166 178 7.4E-8 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 136 147 7.4E-8 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 135 7.4E-8 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 SUPERFAMILY SSF51306 81 211 4.53E-28 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 Gene3D G3DSA:2.10.109.10 87 213 7.6E-35 T 13-10-2018 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 TIGRFAM TIGR00498 lexA: repressor LexA 3 213 2.8E-55 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 trd_0666 f73071ad5b83bb5339a4ab488c840a17 214 Pfam PF00717 Peptidase S24-like 128 194 4.7E-11 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C trd_0459 391170135239b71a682a5afecf80091b 586 PIRSF PIRSF006630 7 586 7.4E-201 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 trd_0459 391170135239b71a682a5afecf80091b 586 Pfam PF02540 NAD synthase 312 561 1.3E-74 T 13-10-2018 IPR022310 NAD/GMP synthase trd_0459 391170135239b71a682a5afecf80091b 586 TIGRFAM TIGR00552 nadE: NAD+ synthetase 312 563 6.3E-57 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 trd_0459 391170135239b71a682a5afecf80091b 586 SUPERFAMILY SSF52402 303 569 5.87E-75 T 13-10-2018 trd_0459 391170135239b71a682a5afecf80091b 586 Pfam PF00795 Carbon-nitrogen hydrolase 11 251 7.7E-34 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 trd_0459 391170135239b71a682a5afecf80091b 586 Gene3D G3DSA:3.40.50.620 309 586 4.1E-111 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0459 391170135239b71a682a5afecf80091b 586 SUPERFAMILY SSF56317 8 265 3.53E-66 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_0459 391170135239b71a682a5afecf80091b 586 Gene3D G3DSA:3.60.110.10 7 283 1.3E-94 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_0459 391170135239b71a682a5afecf80091b 586 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 42 57 - T 13-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 trd_0459 391170135239b71a682a5afecf80091b 586 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 10 586 30.28 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 SMART SM00729 74 301 1.7E-4 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 SUPERFAMILY SSF102114 32 375 9.42E-58 T 13-10-2018 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 Pfam PF04055 Radical SAM superfamily 78 251 3.1E-22 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 70 382 6.8E-120 T 13-10-2018 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 TIGRFAM TIGR03551 F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit 38 381 2.2E-146 T 13-10-2018 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 Gene3D G3DSA:3.20.20.70 18 375 3.7E-64 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0899 1b8f98b43fd3d76856e9f36b5c62f510 441 Hamap MF_01612 FO synthase subunit 2 [cofH]. 22 384 48.933 T 13-10-2018 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 SUPERFAMILY SSF56059 97 295 1.54E-63 T 13-10-2018 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 349 7.2E-114 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 Pfam PF02222 ATP-grasp domain 106 275 4.0E-56 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 Gene3D G3DSA:3.30.1490.20 102 175 2.3E-24 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 SUPERFAMILY SSF51246 300 360 5.96E-16 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 SUPERFAMILY SSF52440 2 89 1.73E-19 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 Gene3D G3DSA:3.30.470.20 176 364 2.4E-74 T 13-10-2018 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 Gene3D G3DSA:3.40.50.20 1 101 2.3E-29 T 13-10-2018 trd_0645 6ab38febfc3b5956ed93ae8e7613def5 369 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 347 41.112 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 trd_1971 674a80a3c2d5ba492c44fc839bf0552e 381 Pfam PF01266 FAD dependent oxidoreductase 10 356 5.9E-67 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_1971 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.50.50.60 10 358 3.2E-92 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1971 674a80a3c2d5ba492c44fc839bf0552e 381 SUPERFAMILY SSF51905 9 376 2.94E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1971 674a80a3c2d5ba492c44fc839bf0552e 381 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 11 359 3.4E-80 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 trd_1971 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.30.9.10 96 317 3.2E-92 T 13-10-2018 trd_1971 674a80a3c2d5ba492c44fc839bf0552e 381 SUPERFAMILY SSF54373 230 317 1.47E-13 T 13-10-2018 trd_0295 ca247f548567d9411e00734ee99bb973 695 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 65 264 2.5E-43 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 trd_0295 ca247f548567d9411e00734ee99bb973 695 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 48 373 22.206 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 trd_0295 ca247f548567d9411e00734ee99bb973 695 SUPERFAMILY SSF53271 522 690 1.05E-51 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_0295 ca247f548567d9411e00734ee99bb973 695 Pfam PF11734 TilS substrate C-terminal domain 434 490 1.7E-6 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 trd_0295 ca247f548567d9411e00734ee99bb973 695 Gene3D G3DSA:3.40.50.620 55 294 1.6E-61 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0295 ca247f548567d9411e00734ee99bb973 695 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 525 688 1.4E-62 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 trd_0295 ca247f548567d9411e00734ee99bb973 695 Gene3D G3DSA:3.40.50.2020 514 694 2.5E-62 T 13-10-2018 trd_0295 ca247f548567d9411e00734ee99bb973 695 Pfam PF00156 Phosphoribosyl transferase domain 533 675 1.8E-22 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_0295 ca247f548567d9411e00734ee99bb973 695 SUPERFAMILY SSF82829 271 376 6.02E-14 T 13-10-2018 trd_0295 ca247f548567d9411e00734ee99bb973 695 SUPERFAMILY SSF52402 60 292 6.41E-48 T 13-10-2018 trd_0295 ca247f548567d9411e00734ee99bb973 695 SMART SM00977 432 502 1.0E-8 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 trd_0295 ca247f548567d9411e00734ee99bb973 695 Pfam PF09179 TilS substrate binding domain 312 372 1.3E-5 T 13-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 trd_0295 ca247f548567d9411e00734ee99bb973 695 Pfam PF01171 PP-loop family 66 260 1.6E-41 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 trd_0295 ca247f548567d9411e00734ee99bb973 695 SUPERFAMILY SSF56037 407 488 3.4E-11 T 13-10-2018 trd_0584 3c0706dde1311edc93e26c60255f427a 81 SUPERFAMILY SSF54637 1 72 2.24E-14 T 13-10-2018 IPR029069 HotDog domain superfamily trd_0584 3c0706dde1311edc93e26c60255f427a 81 Gene3D G3DSA:3.10.129.10 1 73 3.7E-16 T 13-10-2018 trd_0753 43251221ac72fcb56532c351629b0cc1 448 SUPERFAMILY SSF53383 1 446 3.54E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0753 43251221ac72fcb56532c351629b0cc1 448 Pfam PF02347 Glycine cleavage system P-protein 5 442 2.1E-129 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 trd_0753 43251221ac72fcb56532c351629b0cc1 448 Gene3D G3DSA:3.90.1150.10 70 443 8.5E-161 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0753 43251221ac72fcb56532c351629b0cc1 448 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 1 446 47.198 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 trd_0753 43251221ac72fcb56532c351629b0cc1 448 PIRSF PIRSF006815 1 447 2.7E-183 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 trd_0753 43251221ac72fcb56532c351629b0cc1 448 Gene3D G3DSA:3.40.640.10 81 348 8.5E-161 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0062 4051ea7d48518f31b8e186bc47d3a8ad 424 Pfam PF01098 Cell cycle protein 28 378 1.3E-96 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_0062 4051ea7d48518f31b8e186bc47d3a8ad 424 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 26 378 1.1E-109 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_A0241 caad264e8a6ba1ca614378db3dffadd5 127 SMART SM00748 9 118 1.1E-27 T 13-10-2018 IPR007842 HEPN domain trd_A0241 caad264e8a6ba1ca614378db3dffadd5 127 Gene3D G3DSA:1.20.120.330 2 126 2.3E-37 T 13-10-2018 trd_A0241 caad264e8a6ba1ca614378db3dffadd5 127 SUPERFAMILY SSF81593 4 124 7.46E-40 T 13-10-2018 trd_A0241 caad264e8a6ba1ca614378db3dffadd5 127 Pfam PF05168 HEPN domain 7 123 1.6E-32 T 13-10-2018 IPR007842 HEPN domain trd_1522 49daab32d385512f89c001754d241412 51 TIGRFAM TIGR01206 lysW: lysine biosynthesis protein LysW 2 51 6.6E-22 T 13-10-2018 IPR005906 Lysine biosynthesis protein LysW trd_1522 49daab32d385512f89c001754d241412 51 Gene3D G3DSA:2.20.28.160 1 51 7.7E-23 T 13-10-2018 trd_0230 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 30 217 5.7E-22 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0230 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 Gene3D G3DSA:3.60.40.10 1 236 2.5E-43 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0230 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 SMART SM00331 4 217 5.9E-6 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0230 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 SUPERFAMILY SSF81606 17 217 1.24E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_A0449 a63da1c74f69a5563393fce041bad992 881 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 25 874 2.5E-262 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 SMART SM00533 299 602 9.0E-86 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Gene3D G3DSA:1.10.1420.10 403 514 3.8E-84 T 13-10-2018 trd_A0449 a63da1c74f69a5563393fce041bad992 881 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 701 717 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 SMART SM00534 620 807 1.9E-114 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Gene3D G3DSA:3.40.1170.10 13 135 7.3E-38 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Gene3D G3DSA:1.10.1420.10 281 570 3.8E-84 T 13-10-2018 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Pfam PF05190 MutS family domain IV 439 529 2.3E-27 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Gene3D G3DSA:3.30.420.110 142 274 7.2E-29 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 SUPERFAMILY SSF55271 18 129 1.83E-32 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Pfam PF05188 MutS domain II 143 265 6.3E-18 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Pfam PF01624 MutS domain I 25 132 6.3E-34 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Gene3D G3DSA:3.40.50.300 581 820 6.5E-103 T 13-10-2018 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Pfam PF00488 MutS domain V 624 805 3.1E-82 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 SUPERFAMILY SSF52540 578 805 4.38E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0449 a63da1c74f69a5563393fce041bad992 881 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 23 870 22.957 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 SUPERFAMILY SSF48334 282 577 3.4E-77 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily trd_A0449 a63da1c74f69a5563393fce041bad992 881 PIRSF PIRSF037677 217 806 1.7E-126 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 PIRSF PIRSF037677 15 198 1.1E-23 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 Pfam PF05192 MutS domain III 284 570 1.4E-35 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 trd_A0449 a63da1c74f69a5563393fce041bad992 881 SUPERFAMILY SSF53150 132 295 9.94E-32 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 trd_0302 9bf76e0497d95fe49bc2a0eb06474cdd 230 Gene3D G3DSA:3.40.1080.10 2 213 1.1E-82 T 13-10-2018 trd_0302 9bf76e0497d95fe49bc2a0eb06474cdd 230 SUPERFAMILY SSF100950 4 219 3.81E-63 T 13-10-2018 IPR037171 NagB/RpiA transferase-like trd_0302 9bf76e0497d95fe49bc2a0eb06474cdd 230 SMART SM00882 6 202 1.6E-53 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 trd_0302 9bf76e0497d95fe49bc2a0eb06474cdd 230 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 208 8.8E-85 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 trd_0302 9bf76e0497d95fe49bc2a0eb06474cdd 230 Pfam PF01144 Coenzyme A transferase 8 200 2.1E-34 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 Gene3D G3DSA:3.40.50.7700 2 171 1.1E-74 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 PIRSF PIRSF001338 7 169 2.9E-67 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 SMART SM01001 10 161 3.5E-104 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 166 3.2E-68 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 Pfam PF00731 AIR carboxylase 12 158 1.0E-65 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 SUPERFAMILY SSF52255 11 168 7.19E-68 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 trd_0646 bdb658cfd8ae316bde8573ba150df5fe 171 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 165 32.857 T 13-10-2018 IPR033747 Class I PurE trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:2.40.50.100 46 144 7.6E-26 T 13-10-2018 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Pfam PF02817 e3 binding domain 172 207 2.7E-17 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF47005 166 211 1.01E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Pfam PF00364 Biotin-requiring enzyme 53 124 2.0E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:1.10.10.800 357 437 2.8E-58 T 13-10-2018 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 PRINTS PR00111 Alpha/beta hydrolase fold signature 275 290 4.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 PRINTS PR00111 Alpha/beta hydrolase fold signature 325 338 4.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 PRINTS PR00111 Alpha/beta hydrolase fold signature 450 464 4.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:4.10.320.10 167 212 1.2E-20 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:3.40.50.1820 229 489 2.8E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1492 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF53474 214 510 7.22E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1492 f88cfdeefbc42e290e03606134937c3d 518 Pfam PF12146 Serine aminopeptidase, S33 266 487 1.6E-20 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 trd_1492 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF51230 49 131 3.27E-23 T 13-10-2018 IPR011053 Single hybrid motif trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 Hamap MF_00487 Malate dehydrogenase [mdh]. 3 306 45.325 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 SUPERFAMILY SSF51735 2 142 1.81E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 2 303 1.7E-143 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 PIRSF PIRSF000102 1 309 1.4E-105 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 146 303 1.1E-29 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 SUPERFAMILY SSF56327 144 305 4.04E-53 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 140 158 2.8E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 170 183 2.8E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 28 52 2.8E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 116 136 2.8E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 4 28 2.8E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 Gene3D G3DSA:3.90.110.10 145 309 1.7E-59 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 Gene3D G3DSA:3.40.50.720 1 144 1.4E-52 T 13-10-2018 trd_0921 729c7bd1b664f7ed880df4e61d9931bb 309 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 4 142 1.8E-40 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 trd_1119 87f3817f263e83e71a3e8058f830f374 785 Gene3D G3DSA:1.10.1400.10 531 668 3.2E-147 T 13-10-2018 trd_1119 87f3817f263e83e71a3e8058f830f374 785 Gene3D G3DSA:3.60.20.10 243 759 3.2E-147 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_1119 87f3817f263e83e71a3e8058f830f374 785 PIRSF PIRSF001227 1 784 8.5E-167 T 13-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 trd_1119 87f3817f263e83e71a3e8058f830f374 785 Gene3D G3DSA:1.10.439.10 19 176 1.5E-43 T 13-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 trd_1119 87f3817f263e83e71a3e8058f830f374 785 Gene3D G3DSA:2.30.120.10 315 383 3.2E-147 T 13-10-2018 trd_1119 87f3817f263e83e71a3e8058f830f374 785 Pfam PF01804 Penicillin amidase 43 772 7.6E-183 T 13-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 trd_1119 87f3817f263e83e71a3e8058f830f374 785 SUPERFAMILY SSF56235 38 783 4.63E-181 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 SUPERFAMILY SSF81665 280 792 1.96E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00942 Copper-transporting ATPase 1 signature 230 255 3.2E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00942 Copper-transporting ATPase 1 signature 118 139 3.2E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00942 Copper-transporting ATPase 1 signature 15 40 3.2E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 ProSitePatterns PS01047 Heavy-metal-associated domain. 100 129 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 18 79 3.6E-12 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 96 159 2.7E-11 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Gene3D G3DSA:2.70.150.20 308 420 3.6E-43 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 SUPERFAMILY SSF81653 317 415 1.83E-32 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Pfam PF00403 Heavy-metal-associated domain 98 158 6.3E-17 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Pfam PF00403 Heavy-metal-associated domain 18 78 1.8E-16 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 139 159 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 438 452 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 691 708 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 232 251 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 285 304 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 305 323 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00943 Copper-transporting ATPase signature 110 124 2.3E-9 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 365 379 5.1E-34 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 714 733 5.1E-34 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 650 5.1E-34 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 515 529 5.1E-34 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 737 749 5.1E-34 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 671 5.1E-34 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Pfam PF00122 E1-E2 ATPase 316 493 1.8E-59 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Gene3D G3DSA:3.30.70.100 14 80 1.0E-21 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 SUPERFAMILY SSF55008 93 162 3.67E-24 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 ProSitePatterns PS01047 Heavy-metal-associated domain. 20 49 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Pfam PF00702 haloacid dehalogenase-like hydrolase 512 728 2.0E-46 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 517 523 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Gene3D G3DSA:3.30.70.100 88 160 7.7E-25 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 SUPERFAMILY SSF56784 513 814 8.25E-68 T 13-10-2018 IPR036412 HAD-like superfamily trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Gene3D G3DSA:3.40.1110.10 526 646 4.4E-99 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 288 798 3.2E-99 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 Gene3D G3DSA:3.40.50.1000 496 766 4.4E-99 T 13-10-2018 IPR023214 HAD superfamily trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 229 817 6.1E-177 T 13-10-2018 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 247 816 2.1E-193 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1414 ce0898095ba5e5e16b8e905e2aa45dc1 842 SUPERFAMILY SSF55008 12 84 6.81E-21 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 SUPERFAMILY SSF56784 2 218 8.27E-45 T 13-10-2018 IPR036412 HAD-like superfamily trd_1663 84892f8d5790f6a0aee982981e6693bd 251 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 132 148 3.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 3.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 170 3.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 108 188 2.3E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 Gene3D G3DSA:3.40.50.1000 5 212 1.3E-48 T 13-10-2018 IPR023214 HAD superfamily trd_1663 84892f8d5790f6a0aee982981e6693bd 251 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 188 2.6E-23 T 13-10-2018 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 Gene3D G3DSA:1.20.120.710 16 89 1.3E-48 T 13-10-2018 trd_1663 84892f8d5790f6a0aee982981e6693bd 251 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 108 183 3.7E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0816 ca7ceae8d3056dbd0ee6d82ad5655816 494 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 30 494 1.2E-146 T 13-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 trd_A0816 ca7ceae8d3056dbd0ee6d82ad5655816 494 Gene3D G3DSA:3.40.50.720 161 286 1.1E-20 T 13-10-2018 trd_A0816 ca7ceae8d3056dbd0ee6d82ad5655816 494 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 30 494 2.8E-144 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase trd_A0816 ca7ceae8d3056dbd0ee6d82ad5655816 494 Pfam PF02397 Bacterial sugar transferase 301 488 8.3E-71 T 13-10-2018 IPR003362 Bacterial sugar transferase trd_A0816 ca7ceae8d3056dbd0ee6d82ad5655816 494 Pfam PF13727 CoA-binding domain 84 265 8.6E-26 T 13-10-2018 trd_A0816 ca7ceae8d3056dbd0ee6d82ad5655816 494 SUPERFAMILY SSF51735 163 277 9.85E-12 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1026 06d0937a6bfa30d91255b6f4ea75513e 592 Gene3D G3DSA:2.60.40.1120 121 199 4.7E-8 T 13-10-2018 trd_1026 06d0937a6bfa30d91255b6f4ea75513e 592 SUPERFAMILY SSF49464 200 271 1.16E-5 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily trd_1026 06d0937a6bfa30d91255b6f4ea75513e 592 Pfam PF13200 Putative glycosyl hydrolase domain 274 583 2.2E-117 T 13-10-2018 IPR025275 Putative glycosyl hydrolase domain DUF4015 trd_1026 06d0937a6bfa30d91255b6f4ea75513e 592 SUPERFAMILY SSF49464 121 200 6.41E-10 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily trd_1026 06d0937a6bfa30d91255b6f4ea75513e 592 Pfam PF13620 Carboxypeptidase regulatory-like domain 122 196 5.3E-10 T 13-10-2018 trd_1026 06d0937a6bfa30d91255b6f4ea75513e 592 SUPERFAMILY SSF51445 333 500 2.6E-10 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1193 5e75a8e140be6458790571464d1a3cb5 268 Pfam PF03437 BtpA family 13 262 5.5E-87 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family trd_1193 5e75a8e140be6458790571464d1a3cb5 268 SUPERFAMILY SSF51366 17 266 2.35E-27 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_1193 5e75a8e140be6458790571464d1a3cb5 268 TIGRFAM TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family 13 263 1.5E-87 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family trd_1193 5e75a8e140be6458790571464d1a3cb5 268 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 52 201 4.0E-34 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family trd_1193 5e75a8e140be6458790571464d1a3cb5 268 PIRSF PIRSF005956 2 267 1.9E-97 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 SUPERFAMILY SSF54665 4 160 9.81E-51 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 SUPERFAMILY SSF56003 131 780 2.22E-199 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 SMART SM01008 26 139 1.8E-55 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 26 139 6.2E-34 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 716 8.3E-177 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Gene3D G3DSA:3.30.365.10 153 369 3.8E-73 T 13-10-2018 trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Gene3D G3DSA:3.30.365.10 463 631 7.2E-136 T 13-10-2018 trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Gene3D G3DSA:3.30.365.10 379 756 7.2E-136 T 13-10-2018 trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Gene3D G3DSA:3.90.1170.50 2 139 4.6E-53 T 13-10-2018 trd_A0775 6613315e1ae73c3c62b6b18fd0c06d35 784 Gene3D G3DSA:3.30.365.10 195 291 3.8E-73 T 13-10-2018 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Hamap MF_01382 Protein translocase subunit SecA [secA]. 22 822 20.163 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 SMART SM00957 23 426 5.1E-274 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Gene3D G3DSA:1.10.1200.230 665 746 0.0 T 13-10-2018 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Gene3D G3DSA:3.40.50.300 441 614 0.0 T 13-10-2018 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 SUPERFAMILY SSF52540 440 613 2.42E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Pfam PF02810 SEC-C motif 853 871 3.7E-10 T 13-10-2018 IPR004027 SEC-C motif trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 PRINTS PR00906 SecA protein signature 437 450 6.0E-57 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 PRINTS PR00906 SecA protein signature 118 132 6.0E-57 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 PRINTS PR00906 SecA protein signature 80 104 6.0E-57 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 PRINTS PR00906 SecA protein signature 134 144 6.0E-57 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 PRINTS PR00906 SecA protein signature 363 385 6.0E-57 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 PRINTS PR00906 SecA protein signature 400 417 6.0E-57 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Pfam PF07517 SecA DEAD-like domain 23 426 1.8E-127 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 SUPERFAMILY SSF81767 266 392 4.97E-43 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 ProSitePatterns PS01312 SecA family signature. 524 539 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Gene3D G3DSA:1.10.3060.10 615 817 0.0 T 13-10-2018 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 SUPERFAMILY SSF52540 21 439 1.63E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Pfam PF01043 SecA preprotein cross-linking domain 272 382 3.0E-39 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Gene3D G3DSA:3.10.450.50 839 872 1.3E-7 T 13-10-2018 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Gene3D G3DSA:3.90.1440.10 268 392 0.0 T 13-10-2018 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 SMART SM00958 267 382 6.8E-64 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Pfam PF07516 SecA Wing and Scaffold domain 612 820 9.4E-59 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 SUPERFAMILY SSF81886 615 861 3.01E-69 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily trd_0405 e8400cbdf524e4f4e0a57484519b637d 881 Gene3D G3DSA:3.40.50.300 33 440 0.0 T 13-10-2018 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 SUPERFAMILY SSF102735 2 129 3.66E-29 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 Gene3D G3DSA:3.10.50.40 148 247 1.9E-68 T 13-10-2018 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 PIRSF PIRSF003095 1 432 9.2E-100 T 13-10-2018 IPR005215 Trigger factor GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 SUPERFAMILY SSF109998 249 424 1.57E-35 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 SUPERFAMILY SSF54534 130 248 2.16E-15 T 13-10-2018 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 Gene3D G3DSA:1.10.3120.10 112 421 1.9E-68 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 Pfam PF05697 Bacterial trigger factor protein (TF) 2 141 1.3E-37 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 Gene3D G3DSA:3.30.70.1050 3 111 9.0E-27 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 Hamap MF_00303 Trigger factor [tig]. 1 431 18.695 T 13-10-2018 IPR005215 Trigger factor GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 261 421 1.2E-34 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 trd_1203 64956a9a3c6633698fa9c065c43e23ec 490 TIGRFAM TIGR00115 tig: trigger factor 12 419 7.8E-103 T 13-10-2018 IPR005215 Trigger factor GO:0015031 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 12 339 4.0E-147 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.30.420.40 157 320 1.4E-128 T 13-10-2018 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 5.8E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 5.8E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 5.8E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 5.8E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 5.8E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 SUPERFAMILY SSF53067 12 151 8.12E-40 T 13-10-2018 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.30.420.40 16 331 1.4E-128 T 13-10-2018 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.90.640.10 189 262 1.4E-128 T 13-10-2018 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Pfam PF06723 MreB/Mbl protein 14 337 2.5E-143 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1938 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 SUPERFAMILY SSF53067 152 338 2.76E-49 T 13-10-2018 trd_0041 0f4e304631eae2185dc1abfde32142f3 257 Gene3D G3DSA:1.10.12.10 200 257 6.3E-23 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal trd_0041 0f4e304631eae2185dc1abfde32142f3 257 Gene3D G3DSA:3.90.226.10 1 199 4.4E-76 T 13-10-2018 trd_0041 0f4e304631eae2185dc1abfde32142f3 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 trd_0041 0f4e304631eae2185dc1abfde32142f3 257 SUPERFAMILY SSF52096 3 257 2.87E-96 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_0041 0f4e304631eae2185dc1abfde32142f3 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 256 1.3E-71 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_0438 f889122a27e8d9d3f6d9f1ee061c495d 248 Hamap MF_00238 Cytidylate kinase [cmk]. 8 230 32.675 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 trd_0438 f889122a27e8d9d3f6d9f1ee061c495d 248 SUPERFAMILY SSF52540 8 229 8.43E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0438 f889122a27e8d9d3f6d9f1ee061c495d 248 TIGRFAM TIGR00017 cmk: cytidylate kinase 8 224 2.0E-70 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 trd_0438 f889122a27e8d9d3f6d9f1ee061c495d 248 Gene3D G3DSA:3.40.50.300 4 233 7.4E-82 T 13-10-2018 trd_0438 f889122a27e8d9d3f6d9f1ee061c495d 248 Pfam PF02224 Cytidylate kinase 10 227 1.6E-71 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 trd_1046 58e4195da7c3ec6294a5cd39964172f4 125 SUPERFAMILY SSF52980 6 115 7.72E-23 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 trd_1046 58e4195da7c3ec6294a5cd39964172f4 125 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 6 109 1.2E-22 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 trd_1046 58e4195da7c3ec6294a5cd39964172f4 125 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 114 20.71 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 trd_1046 58e4195da7c3ec6294a5cd39964172f4 125 Pfam PF02021 Uncharacterised protein family UPF0102 10 101 4.4E-26 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 trd_1046 58e4195da7c3ec6294a5cd39964172f4 125 Gene3D G3DSA:3.40.1350.10 9 116 7.3E-33 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 Gene3D G3DSA:1.20.272.10 252 359 3.9E-7 T 13-10-2018 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 125 143 7.9E-6 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 7.9E-6 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 Gene3D G3DSA:3.40.50.300 13 178 7.9E-100 T 13-10-2018 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 Pfam PF13177 DNA polymerase III, delta subunit 20 179 4.2E-42 T 13-10-2018 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 5 305 6.2E-117 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 SUPERFAMILY SSF48019 252 356 5.36E-7 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 SMART SM00382 37 180 2.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 239 328 3.4E-8 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 SUPERFAMILY SSF52540 35 227 2.04E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1759 e4bc31ffa93475b93aba4213b390fbd5 562 Gene3D G3DSA:1.10.8.60 8 230 7.9E-100 T 13-10-2018 trd_0464 7b2f929ed0c5d5140084ae9510f83adf 197 SUPERFAMILY SSF46626 83 196 7.3E-23 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0464 7b2f929ed0c5d5140084ae9510f83adf 197 Gene3D G3DSA:1.10.760.10 72 197 5.4E-24 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0464 7b2f929ed0c5d5140084ae9510f83adf 197 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 93 191 2.6E-14 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1638 000bbea655504b8eb50c23d1533504b5 348 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 4 329 24.864 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 trd_1638 000bbea655504b8eb50c23d1533504b5 348 Gene3D G3DSA:1.10.10.10 1 88 1.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1638 000bbea655504b8eb50c23d1533504b5 348 SUPERFAMILY SSF55781 75 338 5.69E-43 T 13-10-2018 trd_1638 000bbea655504b8eb50c23d1533504b5 348 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 6 335 8.7E-88 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 trd_1638 000bbea655504b8eb50c23d1533504b5 348 Pfam PF01628 HrcA protein C terminal domain 109 321 3.9E-43 T 13-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 trd_1638 000bbea655504b8eb50c23d1533504b5 348 SUPERFAMILY SSF46785 5 87 1.69E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1638 000bbea655504b8eb50c23d1533504b5 348 Gene3D G3DSA:3.30.450.40 110 335 2.4E-32 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1638 000bbea655504b8eb50c23d1533504b5 348 PIRSF PIRSF005485 2 340 3.6E-88 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 trd_1638 000bbea655504b8eb50c23d1533504b5 348 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 4 71 2.1E-6 T 13-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 trd_1638 000bbea655504b8eb50c23d1533504b5 348 Gene3D G3DSA:3.30.390.60 131 227 2.4E-32 T 13-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily trd_0482 381f0a737cd9db7446cb26b2667ad301 397 Gene3D G3DSA:3.40.50.720 156 334 6.6E-148 T 13-10-2018 trd_0482 381f0a737cd9db7446cb26b2667ad301 397 SUPERFAMILY SSF51735 156 334 3.43E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0482 381f0a737cd9db7446cb26b2667ad301 397 Gene3D G3DSA:3.40.50.720 20 378 6.6E-148 T 13-10-2018 trd_0482 381f0a737cd9db7446cb26b2667ad301 397 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 21 156 1.0E-46 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal trd_0482 381f0a737cd9db7446cb26b2667ad301 397 SMART SM01002 165 327 4.5E-81 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain trd_0482 381f0a737cd9db7446cb26b2667ad301 397 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 160 382 9.0E-71 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain trd_0482 381f0a737cd9db7446cb26b2667ad301 397 SUPERFAMILY SSF52283 19 187 1.02E-53 T 13-10-2018 trd_0482 381f0a737cd9db7446cb26b2667ad301 397 SMART SM01003 21 156 2.6E-67 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal trd_0482 381f0a737cd9db7446cb26b2667ad301 397 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 189 214 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 trd_0817 8a3e228af886a2366a2c8b3ce9a45e03 179 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 126 167 4.1E-9 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 trd_0817 8a3e228af886a2366a2c8b3ce9a45e03 179 SUPERFAMILY SSF46955 124 175 9.34E-7 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_0817 8a3e228af886a2366a2c8b3ce9a45e03 179 Gene3D G3DSA:1.10.1660.10 125 179 8.4E-8 T 13-10-2018 trd_0817 8a3e228af886a2366a2c8b3ce9a45e03 179 Pfam PF12728 Helix-turn-helix domain 125 173 7.4E-8 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 SUPERFAMILY SSF52317 19 238 1.72E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Gene3D G3DSA:3.40.50.880 18 210 8.3E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Gene3D G3DSA:3.40.50.620 211 407 1.2E-73 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 214 527 2.8E-150 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 SUPERFAMILY SSF54810 407 527 1.44E-51 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Gene3D G3DSA:3.30.300.10 408 527 6.4E-55 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00096 Glutamine amidotransferase superfamily signature 65 74 5.6E-8 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00096 Glutamine amidotransferase superfamily signature 92 103 5.6E-8 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00096 Glutamine amidotransferase superfamily signature 178 191 5.6E-8 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Pfam PF02540 NAD synthase 217 255 9.5E-5 T 13-10-2018 IPR022310 NAD/GMP synthase trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 18 527 54.135 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 SUPERFAMILY SSF52402 194 448 2.65E-55 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Pfam PF00117 Glutamine amidotransferase class-I 23 201 1.3E-38 T 13-10-2018 IPR017926 Glutamine amidotransferase trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00097 Anthranilate synthase component II signature 178 191 6.7E-6 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00097 Anthranilate synthase component II signature 65 74 6.7E-6 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00097 Anthranilate synthase component II signature 92 103 6.7E-6 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 62 76 4.6E-6 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 92 108 4.6E-6 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 21 35 4.6E-6 T 13-10-2018 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 Pfam PF00958 GMP synthase C terminal domain 435 526 2.8E-43 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 trd_1184 7a460586f1e7b4750ed5982fd25fadd4 527 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 21 205 4.3E-70 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 trd_1366 267da6b471589af2fd44f9c10eede62b 246 Gene3D G3DSA:3.40.50.12740 28 237 1.8E-75 T 13-10-2018 trd_1366 267da6b471589af2fd44f9c10eede62b 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 8.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1366 267da6b471589af2fd44f9c10eede62b 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 8.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1366 267da6b471589af2fd44f9c10eede62b 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 8.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1366 267da6b471589af2fd44f9c10eede62b 246 SMART SM00421 174 231 2.1E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1366 267da6b471589af2fd44f9c10eede62b 246 Pfam PF00072 Response regulator receiver domain 30 141 8.1E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1366 267da6b471589af2fd44f9c10eede62b 246 ProSitePatterns PS00622 LuxR-type HTH domain signature. 191 218 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1366 267da6b471589af2fd44f9c10eede62b 246 SMART SM00448 28 141 1.3E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1366 267da6b471589af2fd44f9c10eede62b 246 SUPERFAMILY SSF46894 163 238 3.16E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1366 267da6b471589af2fd44f9c10eede62b 246 SUPERFAMILY SSF52172 27 159 9.53E-40 T 13-10-2018 IPR011006 CheY-like superfamily trd_1366 267da6b471589af2fd44f9c10eede62b 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 177 231 1.4E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 16 130 8.5E-24 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 17 131 3.5E-26 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 SUPERFAMILY SSF56214 15 131 1.83E-27 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 20 130 3.0E-14 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 15 133 24.17 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 Gene3D G3DSA:3.90.470.20 15 132 2.5E-34 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 trd_0814 b8541dc71a8643f553c7da0517c69b98 147 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 17 129 1.3E-18 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 trd_0940 7e770713f882c9a24dcec9b336716790 436 Gene3D G3DSA:3.60.21.10 132 386 3.2E-75 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_0940 7e770713f882c9a24dcec9b336716790 436 Pfam PF13671 AAA domain 11 96 2.0E-10 T 13-10-2018 trd_0940 7e770713f882c9a24dcec9b336716790 436 Gene3D G3DSA:3.40.50.300 1 128 2.0E-27 T 13-10-2018 trd_0940 7e770713f882c9a24dcec9b336716790 436 PRINTS PR00114 Serine/threonine phosphatase family signature 139 166 2.0E-6 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0940 7e770713f882c9a24dcec9b336716790 436 PRINTS PR00114 Serine/threonine phosphatase family signature 186 213 2.0E-6 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0940 7e770713f882c9a24dcec9b336716790 436 SUPERFAMILY SSF52540 21 97 1.17E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0940 7e770713f882c9a24dcec9b336716790 436 SUPERFAMILY SSF56300 135 366 2.59E-44 T 13-10-2018 trd_0940 7e770713f882c9a24dcec9b336716790 436 Pfam PF00149 Calcineurin-like phosphoesterase 139 337 2.0E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_0825 d49b1ee09223490237697aed4d241cf1 1485 Pfam PF10060 Uncharacterized membrane protein (DUF2298) 694 1234 1.5E-117 T 13-10-2018 IPR018746 Protein of unknown function DUF2298 trd_0825 d49b1ee09223490237697aed4d241cf1 1485 TIGRFAM TIGR03662 Chlor_Arch_YYY: chlor_Arch_YYY domain 651 1431 7.8E-124 T 13-10-2018 IPR018746 Protein of unknown function DUF2298 trd_0825 d49b1ee09223490237697aed4d241cf1 1485 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 116 238 3.8E-9 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like trd_A0289 62b5642c09bd4843e4b6d2c13b7b8ce3 191 SUPERFAMILY SSF52980 8 188 1.07E-20 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 trd_A0289 62b5642c09bd4843e4b6d2c13b7b8ce3 191 Pfam PF05685 Putative restriction endonuclease 30 185 2.8E-32 T 13-10-2018 IPR008538 Domain of unknown function DUF820 trd_A0289 62b5642c09bd4843e4b6d2c13b7b8ce3 191 Gene3D G3DSA:3.90.1570.10 9 190 2.2E-13 T 13-10-2018 trd_A0544 8cd4f8cc0f757a6463c66798f25ee610 134 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 6 89 1.8E-22 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0544 8cd4f8cc0f757a6463c66798f25ee610 134 Gene3D G3DSA:2.30.110.10 5 134 6.3E-36 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_A0544 8cd4f8cc0f757a6463c66798f25ee610 134 SUPERFAMILY SSF50475 3 134 1.23E-32 T 13-10-2018 trd_A0544 8cd4f8cc0f757a6463c66798f25ee610 134 TIGRFAM TIGR03667 Rv3369: PPOX class probable F420-dependent enzyme, Rv3369 family 3 131 2.0E-60 T 13-10-2018 IPR019966 F420-dependent enzyme, PPOX class, family Rv3369, probable trd_A0544 8cd4f8cc0f757a6463c66798f25ee610 134 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 12 132 1.0E-24 T 13-10-2018 IPR019920 F420-binding domain, putative trd_0102 25d83955e71b7807fea8c8f15233b537 539 Pfam PF04715 Anthranilate synthase component I, N terminal region 41 203 7.7E-36 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_0102 25d83955e71b7807fea8c8f15233b537 539 SUPERFAMILY SSF56322 30 527 7.33E-164 T 13-10-2018 IPR005801 ADC synthase GO:0009058 trd_0102 25d83955e71b7807fea8c8f15233b537 539 Pfam PF00425 chorismate binding enzyme 264 516 2.9E-100 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal trd_0102 25d83955e71b7807fea8c8f15233b537 539 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 40 525 6.7E-169 T 13-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_0102 25d83955e71b7807fea8c8f15233b537 539 Gene3D G3DSA:3.60.120.10 11 534 9.6E-190 T 13-10-2018 IPR005801 ADC synthase GO:0009058 trd_0102 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 364 377 3.4E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_0102 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 378 391 3.4E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_0102 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 473 487 3.4E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_0102 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 458 472 3.4E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_1232 fc4108390c44aea83ee52967cd1b6f30 165 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 14 160 2.2E-35 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 trd_1232 fc4108390c44aea83ee52967cd1b6f30 165 SUPERFAMILY SSF81573 66 125 3.79E-11 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily trd_1232 fc4108390c44aea83ee52967cd1b6f30 165 Gene3D G3DSA:1.20.5.620 65 126 1.8E-9 T 13-10-2018 trd_1232 fc4108390c44aea83ee52967cd1b6f30 165 Pfam PF00430 ATP synthase B/B' CF(0) 11 140 2.6E-30 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 trd_1232 fc4108390c44aea83ee52967cd1b6f30 165 Hamap MF_01398 ATP synthase subunit b [atpF]. 5 142 13.696 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Gene3D G3DSA:3.40.228.10 187 429 4.8E-76 T 13-10-2018 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Gene3D G3DSA:2.40.40.20 714 845 3.5E-24 T 13-10-2018 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Gene3D G3DSA:3.30.2070.10 504 527 4.8E-76 T 13-10-2018 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 SMART SM00926 53 109 2.3E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 SUPERFAMILY SSF50692 741 931 6.75E-29 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 56 107 2.9E-9 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Pfam PF00384 Molybdopterin oxidoreductase 112 516 1.6E-26 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Gene3D G3DSA:2.20.25.90 49 113 6.0E-14 T 13-10-2018 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Pfam PF01568 Molydopterin dinucleotide binding domain 743 819 8.1E-16 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 Gene3D G3DSA:3.40.50.740 123 529 4.8E-76 T 13-10-2018 trd_A0628 71670ee72839ab6d1649b3d24cb0cc79 972 SUPERFAMILY SSF53706 56 712 8.64E-122 T 13-10-2018 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 6.5E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 6.5E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 6.5E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 17 33 6.5E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 4 329 41.081 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 328 2.5E-106 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 SUPERFAMILY SSF52374 6 328 2.93E-97 T 13-10-2018 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 Gene3D G3DSA:1.10.240.10 186 296 7.4E-136 T 13-10-2018 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 Gene3D G3DSA:3.40.50.620 8 327 7.4E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 13 22 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_A0366 4e0ca9a819745a16887b54a2a90aaf35 334 Pfam PF00579 tRNA synthetases class I (W and Y) 4 283 1.4E-80 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_A0230 5afe5da2d0f461ee2248137064240b63 271 SUPERFAMILY SSF51735 9 252 2.88E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 3.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 3.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 3.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 3.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 252 9.8E-48 T 13-10-2018 trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0230 5afe5da2d0f461ee2248137064240b63 271 Gene3D G3DSA:3.40.50.720 1 254 7.7E-65 T 13-10-2018 trd_1443 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 SUPERFAMILY SSF52833 46 142 4.9E-9 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1443 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 Gene3D G3DSA:3.40.30.10 12 145 3.4E-18 T 13-10-2018 trd_1443 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 Pfam PF14595 Thioredoxin 12 134 8.2E-32 T 13-10-2018 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 PIRSF PIRSF001549 15 449 2.9E-133 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 SUPERFAMILY SSF55681 17 345 1.03E-80 T 13-10-2018 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 29 399 23.896 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 Pfam PF13393 Histidyl-tRNA synthetase 22 339 1.1E-56 T 13-10-2018 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 Gene3D G3DSA:3.30.930.10 10 351 9.4E-116 T 13-10-2018 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 SUPERFAMILY SSF52954 356 448 1.09E-23 T 13-10-2018 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 Pfam PF03129 Anticodon binding domain 358 447 8.9E-19 T 13-10-2018 IPR004154 Anticodon-binding trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 18 437 3.2E-121 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 Gene3D G3DSA:3.40.50.800 353 449 2.2E-28 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily trd_1043 eb95cf407ed550682c7b2cbfba672ffa 462 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 15 447 28.776 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 Gene3D G3DSA:3.40.50.720 3 261 3.4E-73 T 13-10-2018 trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.7E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.7E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.7E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.7E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.7E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 5.7E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 SUPERFAMILY SSF51735 6 258 2.72E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0087 2fe857379a2693b217df24e28ab3dc26 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 258 6.5E-58 T 13-10-2018 trd_1237 062a51a4801d20c66274ffea063fe6ab 268 Gene3D G3DSA:3.60.15.10 53 265 4.9E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1237 062a51a4801d20c66274ffea063fe6ab 268 Pfam PF13483 Beta-lactamase superfamily domain 58 216 2.0E-48 T 13-10-2018 trd_1237 062a51a4801d20c66274ffea063fe6ab 268 SUPERFAMILY SSF56281 59 238 4.23E-24 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_A0796 b336db8c3aa8cbf5202b32c471b906a4 329 Gene3D G3DSA:3.60.21.10 107 317 2.3E-14 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_A0796 b336db8c3aa8cbf5202b32c471b906a4 329 SUPERFAMILY SSF56300 14 325 6.08E-64 T 13-10-2018 trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 SUPERFAMILY SSF54106 226 271 5.36E-11 T 13-10-2018 trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 SUPERFAMILY SSF54106 112 157 1.05E-11 T 13-10-2018 trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Gene3D G3DSA:3.10.350.10 103 160 2.2E-17 T 13-10-2018 IPR036779 LysM domain superfamily trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Gene3D G3DSA:3.10.350.10 217 275 2.2E-16 T 13-10-2018 IPR036779 LysM domain superfamily trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Gene3D G3DSA:3.10.350.10 162 216 1.5E-16 T 13-10-2018 IPR036779 LysM domain superfamily trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 SUPERFAMILY SSF54106 166 210 3.01E-11 T 13-10-2018 trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 SMART SM00257 227 271 3.9E-16 T 13-10-2018 IPR018392 LysM domain trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 SMART SM00257 113 157 2.6E-14 T 13-10-2018 IPR018392 LysM domain trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 SMART SM00257 166 210 5.5E-13 T 13-10-2018 IPR018392 LysM domain trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Pfam PF01476 LysM domain 167 210 1.3E-12 T 13-10-2018 IPR018392 LysM domain trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Pfam PF01476 LysM domain 114 157 9.8E-15 T 13-10-2018 IPR018392 LysM domain trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Pfam PF01476 LysM domain 228 271 8.6E-15 T 13-10-2018 IPR018392 LysM domain trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Pfam PF13529 Peptidase_C39 like family 283 431 2.6E-22 T 13-10-2018 IPR039564 Peptidase C39-like trd_0480 f3d278eed771245cff246fabcc5cdaaf 464 Gene3D G3DSA:3.90.70.10 278 460 7.1E-29 T 13-10-2018 trd_1280 1b8daadf70b3f41a4448e8f4d2401e72 302 SUPERFAMILY SSF161098 94 300 7.06E-32 T 13-10-2018 IPR035906 MetI-like superfamily trd_1280 1b8daadf70b3f41a4448e8f4d2401e72 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 301 3.1E-36 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1280 1b8daadf70b3f41a4448e8f4d2401e72 302 Gene3D G3DSA:1.10.3720.10 88 301 1.5E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_1603 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:1.10.290.10 288 424 1.7E-170 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 trd_1603 f9b722537eb301ebac7a97abec168270 744 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 340 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 trd_1603 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:2.70.20.10 216 505 1.7E-170 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 trd_1603 f9b722537eb301ebac7a97abec168270 744 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 37 658 2.3E-243 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 Pfam PF01131 DNA topoisomerase 160 595 7.8E-126 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:1.10.460.10 167 598 1.7E-170 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 trd_1603 f9b722537eb301ebac7a97abec168270 744 SMART SM00493 35 135 7.3E-34 T 13-10-2018 IPR006171 TOPRIM domain trd_1603 f9b722537eb301ebac7a97abec168270 744 SMART SM00436 136 224 9.6E-55 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 Hamap MF_00952 DNA topoisomerase 1 [topA]. 35 690 55.443 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 665 702 7.5E-16 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 trd_1603 f9b722537eb301ebac7a97abec168270 744 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 706 718 2.2 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 trd_1603 f9b722537eb301ebac7a97abec168270 744 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 625 660 8.6E-13 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 trd_1603 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:3.30.65.10 607 666 3.9E-12 T 13-10-2018 trd_1603 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 109 122 4.9E-38 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 4.9E-38 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 4.9E-38 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 331 340 4.9E-38 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 409 425 4.9E-38 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:3.40.50.140 34 166 5.2E-53 T 13-10-2018 trd_1603 f9b722537eb301ebac7a97abec168270 744 Pfam PF01751 Toprim domain 37 145 3.6E-30 T 13-10-2018 IPR006171 TOPRIM domain trd_1603 f9b722537eb301ebac7a97abec168270 744 SMART SM00437 280 558 1.4E-112 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 trd_1603 f9b722537eb301ebac7a97abec168270 744 SUPERFAMILY SSF56712 36 637 2.75E-193 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 SUPERFAMILY SSF55447 180 285 2.09E-27 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 Gene3D G3DSA:3.30.43.10 1 57 4.9E-27 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 SMART SM01092 181 284 4.6E-29 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 Gene3D G3DSA:3.30.465.10 58 174 1.8E-39 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 1.6E-44 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 Gene3D G3DSA:3.30.390.50 180 292 1.1E-33 T 13-10-2018 trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 SUPERFAMILY SSF56176 1 174 2.38E-52 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_0577 d92d3cf64177d17bd29c243e46b0229d 294 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 182 282 2.1E-25 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_1282 e20de7126f3e42702b6bd5f79373e0b5 289 Gene3D G3DSA:3.75.10.10 2 288 4.8E-65 T 13-10-2018 trd_1282 e20de7126f3e42702b6bd5f79373e0b5 289 Pfam PF02274 Amidinotransferase 40 287 1.6E-35 T 13-10-2018 trd_1282 e20de7126f3e42702b6bd5f79373e0b5 289 SUPERFAMILY SSF55909 1 287 1.55E-55 T 13-10-2018 trd_A0080 c2701d0d48bb360227ec7e2eb36a73d0 244 SMART SM00382 30 222 2.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0080 c2701d0d48bb360227ec7e2eb36a73d0 244 Pfam PF00005 ABC transporter 32 166 6.6E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0080 c2701d0d48bb360227ec7e2eb36a73d0 244 Gene3D G3DSA:3.40.50.300 2 239 2.2E-56 T 13-10-2018 trd_A0080 c2701d0d48bb360227ec7e2eb36a73d0 244 SUPERFAMILY SSF52540 4 236 6.35E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0080 c2701d0d48bb360227ec7e2eb36a73d0 244 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 SUPERFAMILY SSF52954 408 466 1.86E-5 T 13-10-2018 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 Gene3D G3DSA:3.40.50.800 407 472 5.0E-6 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 Gene3D G3DSA:3.30.930.10 266 406 1.0E-25 T 13-10-2018 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 PIRSF PIRSF001549 11 247 1.1E-51 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 PIRSF PIRSF001549 217 477 1.5E-30 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 SUPERFAMILY SSF55681 14 399 3.45E-66 T 13-10-2018 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 Pfam PF13393 Histidyl-tRNA synthetase 239 397 9.9E-18 T 13-10-2018 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 Pfam PF13393 Histidyl-tRNA synthetase 18 196 4.8E-34 T 13-10-2018 trd_0639 f3a2edec815c39e90f4efdd79427a5cb 480 Gene3D G3DSA:3.30.930.10 11 252 2.5E-49 T 13-10-2018 trd_A0895 c7018b732456c24e80abf8f723fbcbc1 405 SUPERFAMILY SSF53383 27 395 4.13E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0895 c7018b732456c24e80abf8f723fbcbc1 405 Pfam PF00155 Aminotransferase class I and II 40 388 1.1E-38 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_A0895 c7018b732456c24e80abf8f723fbcbc1 405 Gene3D G3DSA:3.40.640.10 65 288 6.0E-121 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0895 c7018b732456c24e80abf8f723fbcbc1 405 Gene3D G3DSA:3.90.1150.10 28 394 6.0E-121 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 SUPERFAMILY SSF64586 413 484 1.14E-18 T 13-10-2018 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 TIGRFAM TIGR00408 proS_fam_I: proline--tRNA ligase 13 484 2.4E-166 T 13-10-2018 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 SMART SM00946 417 484 1.7E-24 T 13-10-2018 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 105 275 5.8E-15 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Hamap MF_01571 Proline--tRNA ligase [proS]. 11 484 42.298 T 13-10-2018 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Gene3D G3DSA:3.30.930.10 7 287 7.5E-98 T 13-10-2018 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 420 484 3.0E-19 T 13-10-2018 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Pfam PF03129 Anticodon binding domain 294 390 1.3E-17 T 13-10-2018 IPR004154 Anticodon-binding trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 SUPERFAMILY SSF55681 15 281 9.64E-73 T 13-10-2018 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Gene3D G3DSA:3.40.50.800 288 407 7.1E-37 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 SUPERFAMILY SSF52954 283 408 1.31E-31 T 13-10-2018 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 140 148 9.4E-8 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 110 121 9.4E-8 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 149 160 9.4E-8 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 69 87 9.4E-8 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 trd_0609 f49028c0a6a17ffc69d5117ec5ba811f 484 Gene3D G3DSA:3.30.110.30 411 484 2.6E-21 T 13-10-2018 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:1.10.287.110 2 115 1.3E-39 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 6 354 3.4E-133 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 13-10-2018 IPR018253 DnaJ domain, conserved site trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF46565 2 103 1.96E-37 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.60.260.20 258 367 4.0E-31 T 13-10-2018 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Pfam PF01556 DnaJ C terminal domain 120 337 6.4E-41 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 62 81 8.6E-32 T 13-10-2018 IPR001623 DnaJ domain trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 26 41 8.6E-32 T 13-10-2018 IPR001623 DnaJ domain trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 42 62 8.6E-32 T 13-10-2018 IPR001623 DnaJ domain trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 8 26 8.6E-32 T 13-10-2018 IPR001623 DnaJ domain trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 SMART SM00271 5 62 2.2E-35 T 13-10-2018 IPR001623 DnaJ domain trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.10.230.10 147 211 1.1E-34 T 13-10-2018 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Pfam PF00226 DnaJ domain 6 67 1.8E-29 T 13-10-2018 IPR001623 DnaJ domain trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 3 375 40.745 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF57938 134 214 6.15E-18 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.60.260.20 117 253 1.1E-34 T 13-10-2018 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF49493 113 271 3.27E-19 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF49493 263 348 9.03E-24 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 trd_1453 776e22c1db33f7f42217eb79d06bfc81 378 Pfam PF00684 DnaJ central domain 147 211 1.4E-13 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 Gene3D G3DSA:3.30.470.20 105 247 4.6E-54 T 13-10-2018 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 ProSitePatterns PS01058 SAICAR synthetase signature 2. 204 212 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 20 291 1.1E-70 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 15 291 24.611 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 Gene3D G3DSA:3.30.200.20 6 104 7.2E-29 T 13-10-2018 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 Pfam PF01259 SAICAR synthetase 19 266 9.4E-95 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0746 93b1bb9a770f39045b27aa75a9c0b16e 302 SUPERFAMILY SSF56104 7 292 2.09E-99 T 13-10-2018 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 Gene3D G3DSA:3.40.50.1260 6 388 4.2E-152 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 Gene3D G3DSA:3.40.50.1260 167 380 4.2E-152 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 3 390 40.347 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 Pfam PF00162 Phosphoglycerate kinase 4 379 5.5E-146 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 SUPERFAMILY SSF53748 2 389 1.0E-142 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PIRSF PIRSF000724 1 392 2.5E-140 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 366 383 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 29 51 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 135 157 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 343 354 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 107 122 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 165 187 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 188 207 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 8 24 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 310 335 1.0E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0779 7c82d975c14ebf8f381515795fea53d8 392 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 13 23 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1839 b740649dbdbec4aa9ec0e3e183f1e21a 566 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 131 479 8.4E-78 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1839 b740649dbdbec4aa9ec0e3e183f1e21a 566 Gene3D G3DSA:3.90.76.10 113 235 8.7E-140 T 13-10-2018 trd_1839 b740649dbdbec4aa9ec0e3e183f1e21a 566 PIRSF PIRSF002741 39 564 2.3E-80 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1839 b740649dbdbec4aa9ec0e3e183f1e21a 566 Gene3D G3DSA:3.10.105.10 335 542 8.7E-140 T 13-10-2018 trd_1839 b740649dbdbec4aa9ec0e3e183f1e21a 566 SUPERFAMILY SSF53850 76 556 5.07E-112 T 13-10-2018 trd_1839 b740649dbdbec4aa9ec0e3e183f1e21a 566 Gene3D G3DSA:3.40.190.10 87 334 8.7E-140 T 13-10-2018 trd_1784 fd9f5441bc8c86d5c90f72573c89c544 341 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 5 337 25.053 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1784 fd9f5441bc8c86d5c90f72573c89c544 341 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 225 238 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1784 fd9f5441bc8c86d5c90f72573c89c544 341 Pfam PF00146 NADH dehydrogenase 15 330 1.3E-125 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1784 fd9f5441bc8c86d5c90f72573c89c544 341 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 51 66 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0219 fc4f22c9796be5d8ff99c261bbb01dbc 120 SUPERFAMILY SSF160214 65 116 8.63E-11 T 13-10-2018 IPR035924 FlaG-like superfamily trd_A0219 fc4f22c9796be5d8ff99c261bbb01dbc 120 Gene3D G3DSA:3.30.160.170 63 118 1.3E-6 T 13-10-2018 IPR035924 FlaG-like superfamily trd_A0219 fc4f22c9796be5d8ff99c261bbb01dbc 120 Pfam PF03646 FlaG protein 71 115 5.4E-7 T 13-10-2018 IPR005186 FlaG protein trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 660 770 1.39E-22 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55781 1612 1765 3.71E-27 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 491 629 2.9E-23 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 765 901 9.34E-23 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 998 1040 0.0095 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 315 356 3.6E-6 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 452 494 5.1E-6 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1547 1589 3.6E-9 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 589 631 1.4E-7 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1272 1314 2.0E-7 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1135 1177 1.5E-8 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1409 1451 1.0E-12 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 726 768 7.3E-10 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 861 903 5.4E-6 T 13-10-2018 IPR001610 PAC motif trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.40 1611 1761 3.9E-28 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 353 492 8.55E-22 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1037 1175 2.42E-22 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF13185 GAF domain 1610 1753 1.4E-16 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1448 1587 8.9E-27 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 1761 1924 4.6E-42 T 13-10-2018 IPR000160 GGDEF domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00267 1754 1927 1.0E-59 T 13-10-2018 IPR000160 GGDEF domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1311 1449 3.32E-28 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 239 309 6.8E-6 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 915 992 4.7E-4 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 368 446 47.0 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 780 855 0.14 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1326 1404 9.8 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1052 1129 1.9E-5 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 506 583 2.4E-6 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 651 720 0.0013 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1189 1266 3.4E-4 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1463 1541 0.038 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55073 1770 1926 7.85E-45 T 13-10-2018 IPR029787 Nucleotide cyclase trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1453 1587 1.8E-30 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1319 1449 5.8E-33 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF00990 Diguanylate cyclase, GGDEF domain 1765 1921 7.8E-45 T 13-10-2018 IPR000160 GGDEF domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00065 1611 1762 1.1E-14 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 238 362 2.0E-16 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 812 910 6.1E-13 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1186 1321 9.2E-18 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1049 1184 1.5E-12 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 503 637 3.6E-15 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 639 774 4.9E-15 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 914 1047 4.5E-9 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1322 1458 1.4E-19 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1459 1594 2.5E-15 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 365 501 3.0E-12 T 13-10-2018 IPR000014 PAS domain trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 245 359 3.22E-24 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 103 233 5.0E-5 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 900 1038 1.18E-21 T 13-10-2018 IPR035965 PAS domain superfamily trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 539 623 4.5E-19 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 811 890 6.5E-19 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 947 1028 6.6E-17 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 676 759 1.8E-17 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1222 1302 2.3E-21 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 265 349 1.4E-22 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1359 1445 2.8E-25 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 402 487 4.1E-16 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1496 1581 1.9E-22 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1085 1166 8.1E-19 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.70.270 1762 1930 9.7E-55 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 913 1038 7.4E-25 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 503 629 1.2E-28 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 366 492 3.4E-24 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1050 1175 3.7E-26 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 778 901 6.5E-26 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 237 354 8.8E-31 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 670 771 6.2E-26 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1216 1318 8.8E-29 T 13-10-2018 trd_0048 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1174 1312 1.11E-25 T 13-10-2018 IPR035965 PAS domain superfamily trd_A0797 239397905989a1fbec157e39a95c128a 142 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 1 129 1.0E-24 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I trd_A0797 239397905989a1fbec157e39a95c128a 142 SUPERFAMILY SSF52788 1 130 1.83E-44 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily trd_A0797 239397905989a1fbec157e39a95c128a 142 Gene3D G3DSA:3.40.50.2300 1 132 7.9E-49 T 13-10-2018 trd_A0797 239397905989a1fbec157e39a95c128a 142 SMART SM00226 1 131 1.4E-50 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I trd_A0299 b5b575f870ea13ae2409044e24001cc1 483 Pfam PF00860 Permease family 33 392 2.9E-36 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 trd_A0299 b5b575f870ea13ae2409044e24001cc1 483 PIRSF PIRSF005353 9 478 2.7E-148 T 13-10-2018 IPR026033 Purine permease PbuG-like trd_A0799 dc96fa708300a042f6fbb28c36a6435f 126 Gene3D G3DSA:3.30.460.10 5 104 2.7E-17 T 13-10-2018 trd_A0799 dc96fa708300a042f6fbb28c36a6435f 126 SUPERFAMILY SSF81301 11 114 1.16E-23 T 13-10-2018 trd_A0799 dc96fa708300a042f6fbb28c36a6435f 126 Pfam PF01909 Nucleotidyltransferase domain 19 102 9.1E-10 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Gene3D G3DSA:3.40.50.740 123 516 5.8E-64 T 13-10-2018 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Gene3D G3DSA:3.30.2070.10 468 536 5.8E-64 T 13-10-2018 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Gene3D G3DSA:2.40.40.20 570 726 4.3E-17 T 13-10-2018 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Pfam PF01568 Molydopterin dinucleotide binding domain 627 709 2.8E-13 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 SUPERFAMILY SSF53706 57 539 8.25E-75 T 13-10-2018 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Pfam PF00384 Molybdopterin oxidoreductase 406 500 1.4E-6 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Pfam PF00384 Molybdopterin oxidoreductase 121 378 5.6E-13 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Gene3D G3DSA:2.20.25.90 67 115 1.8E-8 T 13-10-2018 trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 SUPERFAMILY SSF50692 589 722 1.06E-22 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily trd_0469 bb6c409c2e561e50a19d9d46c5969744 751 Gene3D G3DSA:3.40.228.10 186 393 5.8E-64 T 13-10-2018 trd_0643 615249dc562f3c516e8a82e590f9c545 524 Gene3D G3DSA:3.40.720.10 7 517 5.0E-221 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 trd_0643 615249dc562f3c516e8a82e590f9c545 524 SUPERFAMILY SSF64158 80 311 7.19E-86 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0643 615249dc562f3c516e8a82e590f9c545 524 SUPERFAMILY SSF53649 7 517 4.84E-72 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 trd_0643 615249dc562f3c516e8a82e590f9c545 524 Pfam PF01676 Metalloenzyme superfamily 7 506 1.1E-77 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 trd_0643 615249dc562f3c516e8a82e590f9c545 524 PIRSF PIRSF001492 2 519 1.8E-200 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0643 615249dc562f3c516e8a82e590f9c545 524 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 83 300 8.0E-83 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0643 615249dc562f3c516e8a82e590f9c545 524 Gene3D G3DSA:3.40.1450.10 78 313 5.0E-221 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0643 615249dc562f3c516e8a82e590f9c545 524 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 7 517 2.2E-206 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0643 615249dc562f3c516e8a82e590f9c545 524 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 5 518 48.237 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 Gene3D G3DSA:3.40.630.30 138 314 5.5E-72 T 13-10-2018 trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 SUPERFAMILY SSF55729 12 147 4.98E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 Gene3D G3DSA:3.40.630.30 15 324 5.5E-72 T 13-10-2018 trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 Pfam PF02388 FemAB family 225 328 1.3E-17 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 Pfam PF02388 FemAB family 133 219 1.4E-17 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 Pfam PF02388 FemAB family 25 112 4.5E-8 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 trd_0929 a55e46fd6eb34608d39eee7ee8027005 340 SUPERFAMILY SSF55729 152 333 3.84E-39 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_1865 8c45444339ac230e53d8e88bc91897d2 395 Gene3D G3DSA:3.40.50.10490 7 172 3.2E-21 T 13-10-2018 trd_1865 8c45444339ac230e53d8e88bc91897d2 395 SUPERFAMILY SSF53697 218 391 1.5E-33 T 13-10-2018 trd_1865 8c45444339ac230e53d8e88bc91897d2 395 SUPERFAMILY SSF53697 26 168 8.4E-16 T 13-10-2018 trd_1865 8c45444339ac230e53d8e88bc91897d2 395 Gene3D G3DSA:3.40.50.10490 203 394 6.3E-48 T 13-10-2018 trd_1865 8c45444339ac230e53d8e88bc91897d2 395 Pfam PF13580 SIS domain 213 346 3.0E-18 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 trd_1712 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 229 247 3.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 3.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 3.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 212 227 3.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 SUPERFAMILY SSF102741 359 430 6.41E-15 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily trd_1712 3686a703a22df383f7d78112fcb43077 467 Hamap MF_01454 GTPase Obg [obg]. 1 333 48.605 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 332 4.4E-136 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 Gene3D G3DSA:2.70.210.12 1 157 5.0E-63 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily trd_1712 3686a703a22df383f7d78112fcb43077 467 Pfam PF01018 GTP1/OBG 4 157 2.3E-62 T 13-10-2018 IPR006169 GTP1/OBG domain trd_1712 3686a703a22df383f7d78112fcb43077 467 Gene3D G3DSA:3.40.50.300 158 340 8.0E-54 T 13-10-2018 trd_1712 3686a703a22df383f7d78112fcb43077 467 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 363 429 8.3E-14 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 trd_1712 3686a703a22df383f7d78112fcb43077 467 SUPERFAMILY SSF52540 160 341 4.04E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1712 3686a703a22df383f7d78112fcb43077 467 Pfam PF09269 Domain of unknown function (DUF1967) 367 428 2.3E-14 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 trd_1712 3686a703a22df383f7d78112fcb43077 467 Pfam PF01926 50S ribosome-binding GTPase 160 286 1.1E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1712 3686a703a22df383f7d78112fcb43077 467 SUPERFAMILY SSF82051 1 157 9.94E-57 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily trd_1712 3686a703a22df383f7d78112fcb43077 467 Gene3D G3DSA:2.40.240.60 360 431 2.4E-14 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 Gene3D G3DSA:3.40.50.300 11 288 3.2E-102 T 13-10-2018 trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 Pfam PF01715 IPP transferase 41 284 1.9E-82 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 307 30.98 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 Gene3D G3DSA:1.10.20.140 114 184 3.2E-102 T 13-10-2018 trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 SUPERFAMILY SSF52540 8 153 1.74E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 SUPERFAMILY SSF52540 1 264 1.08E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0869 32afa238a0c8d85df5f2f662c0db2d8c 329 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 292 5.7E-95 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 trd_0900 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.40.50.300 7 433 1.7E-175 T 13-10-2018 trd_0900 11c6c0e95dd438cedf1d3425581b36f2 551 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 551 40.707 T 13-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 trd_0900 11c6c0e95dd438cedf1d3425581b36f2 551 Pfam PF01268 Formate--tetrahydrofolate ligase 7 550 2.4E-223 T 13-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 trd_0900 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.10.410.10 438 527 4.7E-31 T 13-10-2018 trd_0900 11c6c0e95dd438cedf1d3425581b36f2 551 SUPERFAMILY SSF52540 7 549 3.19E-201 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0900 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.30.1510.10 124 240 1.7E-175 T 13-10-2018 trd_1831 5c3382c70d21148617473ede4cf7615d 324 SUPERFAMILY SSF161098 41 316 7.94E-40 T 13-10-2018 IPR035906 MetI-like superfamily trd_1831 5c3382c70d21148617473ede4cf7615d 324 Gene3D G3DSA:1.10.3720.10 93 322 1.4E-37 T 13-10-2018 IPR035906 MetI-like superfamily trd_1831 5c3382c70d21148617473ede4cf7615d 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 319 3.3E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1831 5c3382c70d21148617473ede4cf7615d 324 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 38 319 6.7E-84 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 SMART SM00922 167 270 3.6E-20 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Gene3D G3DSA:3.30.390.10 28 387 4.5E-108 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Gene3D G3DSA:3.20.20.120 140 385 4.5E-108 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Pfam PF13378 Enolase C-terminal domain-like 173 387 1.4E-58 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 SUPERFAMILY SSF51604 135 391 1.05E-70 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 122 147 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 59 147 1.0E-13 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_1343 3bdc3d855a5a2ddfd1f1aa310b439f64 399 SUPERFAMILY SSF54826 56 151 2.19E-24 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF53098 309 491 3.68E-41 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:1.20.1060.10 516 630 1.4E-43 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 178 272 4.2E-29 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00475 6 268 6.2E-135 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF47807 178 291 1.18E-29 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF56672 495 908 5.23E-158 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 176 1.8E-54 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:1.10.150.20 690 833 8.5E-110 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.30.70.370 636 905 8.5E-110 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.30.420.10 309 515 1.5E-57 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00474 308 491 4.7E-22 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00482 658 873 2.5E-115 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00279 179 214 1.5E-16 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 TIGRFAM TIGR00593 pola: DNA polymerase I 10 908 0.0 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF01612 3'-5' exonuclease 310 491 6.9E-25 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:1.10.150.20 180 253 8.0E-101 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF88723 4 176 8.59E-53 T 13-10-2018 IPR029060 PIN-like domain superfamily trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.40.50.1010 10 284 8.0E-101 T 13-10-2018 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 856 869 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 735 760 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 627 649 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 711 724 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 772 783 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 826 842 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 704 8.6E-70 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0700 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF00476 DNA polymerase family A 524 907 3.6E-154 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_1027 3b3cddca34fffb189fee11debe86f1e9 334 Gene3D G3DSA:1.10.600.10 9 333 1.8E-97 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily trd_1027 3b3cddca34fffb189fee11debe86f1e9 334 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 211 223 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site trd_1027 3b3cddca34fffb189fee11debe86f1e9 334 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 89 103 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site trd_1027 3b3cddca34fffb189fee11debe86f1e9 334 SUPERFAMILY SSF48576 11 333 1.3E-84 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily trd_1027 3b3cddca34fffb189fee11debe86f1e9 334 Pfam PF00348 Polyprenyl synthetase 40 285 1.2E-62 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 trd_0928 8ab44a263f22261ba4fc99122f815219 311 SUPERFAMILY SSF48371 73 298 3.96E-31 T 13-10-2018 IPR016024 Armadillo-type fold trd_0928 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 193 222 310.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_0928 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 224 253 3.5E-4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_0928 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 255 284 35.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_0928 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 117 158 360.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_0928 8ab44a263f22261ba4fc99122f815219 311 Pfam PF13646 HEAT repeats 212 297 1.0E-17 T 13-10-2018 trd_0928 8ab44a263f22261ba4fc99122f815219 311 Gene3D G3DSA:1.25.10.110 198 299 3.2E-18 T 13-10-2018 trd_0928 8ab44a263f22261ba4fc99122f815219 311 Gene3D G3DSA:1.25.10.110 65 174 4.1E-6 T 13-10-2018 trd_1836 31f29672e8997d315bddf4eeb07e22f3 199 SUPERFAMILY SSF55729 13 179 8.83E-39 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_1836 31f29672e8997d315bddf4eeb07e22f3 199 Pfam PF13302 Acetyltransferase (GNAT) domain 18 155 1.3E-23 T 13-10-2018 IPR000182 GNAT domain trd_1836 31f29672e8997d315bddf4eeb07e22f3 199 Gene3D G3DSA:3.40.630.30 4 193 7.2E-43 T 13-10-2018 trd_A0883 b59b74c05c5e650ae1cc001f74d4ba97 168 SUPERFAMILY SSF52172 4 125 4.98E-13 T 13-10-2018 IPR011006 CheY-like superfamily trd_A0883 b59b74c05c5e650ae1cc001f74d4ba97 168 Pfam PF00072 Response regulator receiver domain 7 77 9.5E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0883 b59b74c05c5e650ae1cc001f74d4ba97 168 Gene3D G3DSA:3.40.50.2300 1 130 8.6E-10 T 13-10-2018 trd_0731 4ad88747847104f56fd98e36f86ae824 142 SUPERFAMILY SSF54913 48 141 4.45E-13 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_0731 4ad88747847104f56fd98e36f86ae824 142 Gene3D G3DSA:3.30.70.120 48 118 7.2E-29 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal trd_0731 4ad88747847104f56fd98e36f86ae824 142 Pfam PF06153 Cyclic-di-AMP receptor 48 134 8.2E-27 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor trd_0341 6078748b4eea45924d5a6890765f3d2f 265 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 8 243 5.9E-45 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 trd_0341 6078748b4eea45924d5a6890765f3d2f 265 SUPERFAMILY SSF88697 6 70 7.62E-12 T 13-10-2018 IPR015947 PUA-like superfamily trd_0341 6078748b4eea45924d5a6890765f3d2f 265 SUPERFAMILY SSF75217 77 243 1.41E-45 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases trd_0341 6078748b4eea45924d5a6890765f3d2f 265 PIRSF PIRSF015601 5 245 2.4E-57 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 trd_0341 6078748b4eea45924d5a6890765f3d2f 265 Gene3D G3DSA:3.40.1280.10 5 251 3.8E-72 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal trd_0341 6078748b4eea45924d5a6890765f3d2f 265 Pfam PF04452 RNA methyltransferase 21 241 2.3E-59 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 412 423 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 11 538 1.9E-248 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 Gene3D G3DSA:3.50.7.10 199 379 2.7E-230 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 SUPERFAMILY SSF52029 193 383 4.19E-80 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 SUPERFAMILY SSF54849 145 210 6.87E-24 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 Gene3D G3DSA:3.30.260.10 144 417 2.7E-230 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 PRINTS PR00298 60kDa chaperonin signature 357 382 1.8E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 PRINTS PR00298 60kDa chaperonin signature 405 426 1.8E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 PRINTS PR00298 60kDa chaperonin signature 91 118 1.8E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 PRINTS PR00298 60kDa chaperonin signature 35 61 1.8E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 PRINTS PR00298 60kDa chaperonin signature 275 298 1.8E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 SUPERFAMILY SSF48592 15 532 1.42E-77 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 Gene3D G3DSA:1.10.560.10 16 532 2.7E-230 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 Hamap MF_00600 60 kDa chaperonin [groL]. 10 546 40.581 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 trd_1300 2cf5b6db2a6407af5e9a0f03480c2abd 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 31 535 8.0E-97 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 trd_1827 db739df0dec760fee090e31a0bded8ef 238 Gene3D G3DSA:1.20.58.220 116 221 3.4E-42 T 13-10-2018 IPR038078 PhoU-like domain superfamily trd_1827 db739df0dec760fee090e31a0bded8ef 238 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 214 2.5E-65 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 trd_1827 db739df0dec760fee090e31a0bded8ef 238 Pfam PF01895 PhoU domain 21 107 3.5E-21 T 13-10-2018 IPR026022 PhoU domain trd_1827 db739df0dec760fee090e31a0bded8ef 238 Pfam PF01895 PhoU domain 123 208 6.4E-21 T 13-10-2018 IPR026022 PhoU domain trd_1827 db739df0dec760fee090e31a0bded8ef 238 PIRSF PIRSF003107 2 219 1.8E-72 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 trd_1827 db739df0dec760fee090e31a0bded8ef 238 SUPERFAMILY SSF109755 9 220 7.74E-70 T 13-10-2018 trd_1827 db739df0dec760fee090e31a0bded8ef 238 Gene3D G3DSA:1.20.58.220 2 115 6.5E-33 T 13-10-2018 IPR038078 PhoU-like domain superfamily trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 SUPERFAMILY SSF51905 5 346 1.42E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 Gene3D G3DSA:3.50.50.60 225 352 1.1E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 4.2E-9 T 13-10-2018 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 318 325 4.2E-9 T 13-10-2018 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 283 4.2E-9 T 13-10-2018 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 325 1.4E-19 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 Gene3D G3DSA:3.50.50.60 1 131 5.1E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 2.1E-10 T 13-10-2018 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 284 2.1E-10 T 13-10-2018 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 303 325 2.1E-10 T 13-10-2018 trd_0153 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.1E-10 T 13-10-2018 trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 Pfam PF13378 Enolase C-terminal domain-like 203 417 2.0E-62 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 Gene3D G3DSA:3.30.390.10 1 131 2.6E-59 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 SUPERFAMILY SSF54826 4 138 1.85E-41 T 13-10-2018 trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 35 136 1.6E-8 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 SUPERFAMILY SSF51604 125 426 5.11E-73 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 SMART SM00922 199 295 1.9E-28 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 Gene3D G3DSA:3.20.20.120 132 435 4.2E-115 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_A0715 a97401bd6f04b67bc9ca101744160e81 443 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 245 276 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_A0099 3ead86a9aa85b717b54c4722de4f1904 256 SUPERFAMILY SSF52096 3 251 8.07E-90 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0099 3ead86a9aa85b717b54c4722de4f1904 256 Gene3D G3DSA:1.10.12.10 199 253 1.0E-14 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal trd_A0099 3ead86a9aa85b717b54c4722de4f1904 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 251 8.2E-78 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_A0099 3ead86a9aa85b717b54c4722de4f1904 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 trd_A0099 3ead86a9aa85b717b54c4722de4f1904 256 Gene3D G3DSA:3.90.226.10 2 198 1.1E-75 T 13-10-2018 trd_0528 42438075062a720ad9827deba266284d 318 Pfam PF00491 Arginase family 35 306 9.1E-88 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_0528 42438075062a720ad9827deba266284d 318 SUPERFAMILY SSF52768 14 312 1.28E-101 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily trd_0528 42438075062a720ad9827deba266284d 318 Gene3D G3DSA:3.40.800.10 3 314 2.1E-114 T 13-10-2018 trd_0528 42438075062a720ad9827deba266284d 318 PIRSF PIRSF036979 14 313 3.8E-100 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_0528 42438075062a720ad9827deba266284d 318 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 trd_0528 42438075062a720ad9827deba266284d 318 TIGRFAM TIGR01230 agmatinase: agmatinase 34 307 1.3E-64 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 trd_0528 42438075062a720ad9827deba266284d 318 PRINTS PR00116 Arginase signature 121 136 2.9E-15 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_0528 42438075062a720ad9827deba266284d 318 PRINTS PR00116 Arginase signature 234 263 2.9E-15 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_1973 1b5334f6072313d8523a2ff3d8985be8 282 PIRSF PIRSF036298 2 279 2.6E-65 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 trd_1973 1b5334f6072313d8523a2ff3d8985be8 282 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 131 142 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1973 1b5334f6072313d8523a2ff3d8985be8 282 SUPERFAMILY SSF54862 17 221 1.67E-61 T 13-10-2018 trd_1973 1b5334f6072313d8523a2ff3d8985be8 282 Gene3D G3DSA:3.30.70.20 10 160 1.5E-58 T 13-10-2018 trd_1973 1b5334f6072313d8523a2ff3d8985be8 282 Pfam PF13247 4Fe-4S dicluster domain 91 185 1.4E-23 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_1973 1b5334f6072313d8523a2ff3d8985be8 282 Gene3D G3DSA:3.30.70.20 15 220 1.5E-58 T 13-10-2018 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 190 284 4.3E-13 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 415 434 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 Gene3D G3DSA:3.40.50.1220 182 348 4.5E-19 T 13-10-2018 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 Gene3D G3DSA:3.40.50.970 349 537 1.6E-51 T 13-10-2018 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 378 527 5.7E-34 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 160 1.0E-34 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 SUPERFAMILY SSF52518 355 536 3.5E-54 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 Gene3D G3DSA:3.40.50.970 1 166 1.2E-39 T 13-10-2018 trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 SUPERFAMILY SSF52518 2 161 1.37E-32 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0158 4d4ece128c3972ab5d75c17183a93abf 538 SUPERFAMILY SSF52467 186 343 8.81E-18 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 32 45 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 Pfam PF00005 ABC transporter 298 439 9.8E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 SUPERFAMILY SSF52540 1 231 1.16E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 Gene3D G3DSA:3.40.50.300 1 236 2.9E-61 T 13-10-2018 trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 SUPERFAMILY SSF52540 272 500 3.24E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 SMART SM00382 28 235 5.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 SMART SM00382 307 488 4.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 Gene3D G3DSA:3.40.50.300 283 509 6.2E-53 T 13-10-2018 trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 Pfam PF00005 ABC transporter 24 170 3.3E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0190 0935b6889be01e064ec2a1d0aac58e5b 554 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1572 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 Gene3D G3DSA:3.40.309.10 252 446 4.3E-180 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 trd_1572 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 Pfam PF00171 Aldehyde dehydrogenase family 12 477 5.9E-177 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 trd_1572 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 SUPERFAMILY SSF53720 3 480 8.51E-172 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 trd_1572 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 trd_1572 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 trd_1572 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 Gene3D G3DSA:3.40.605.10 8 473 4.3E-180 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 7 176 1.2E-47 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 Gene3D G3DSA:3.30.390.50 181 292 7.1E-35 T 13-10-2018 trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 Gene3D G3DSA:3.30.465.10 61 176 4.6E-43 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 SUPERFAMILY SSF56176 3 176 1.19E-53 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 SUPERFAMILY SSF55447 182 289 1.7E-24 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 Gene3D G3DSA:3.30.43.10 3 56 1.2E-24 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 SMART SM01092 183 286 2.5E-28 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_A0777 ddef7c4bf9b3843cca394127f16c6835 292 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 188 285 2.1E-20 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Gene3D G3DSA:3.30.830.10 5 222 1.3E-70 T 13-10-2018 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Gene3D G3DSA:3.30.830.10 224 431 1.5E-52 T 13-10-2018 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Pfam PF05193 Peptidase M16 inactive domain 171 358 2.5E-29 T 13-10-2018 IPR007863 Peptidase M16, C-terminal trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Pfam PF05193 Peptidase M16 inactive domain 630 808 1.0E-22 T 13-10-2018 IPR007863 Peptidase M16, C-terminal trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 SUPERFAMILY SSF63411 7 221 7.68E-59 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 SUPERFAMILY SSF63411 232 437 3.19E-36 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Pfam PF00675 Insulinase (Peptidase family M16) 20 162 9.8E-26 T 13-10-2018 IPR011765 Peptidase M16, N-terminal trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Pfam PF00675 Insulinase (Peptidase family M16) 489 598 4.2E-7 T 13-10-2018 IPR011765 Peptidase M16, N-terminal trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Gene3D G3DSA:3.30.830.10 470 676 2.8E-39 T 13-10-2018 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 SUPERFAMILY SSF63411 698 877 3.83E-36 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 SUPERFAMILY SSF63411 468 683 6.98E-38 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 trd_A0561 9d056ef1e09e457ecd0035610e6ecaf1 887 Gene3D G3DSA:3.30.830.10 689 877 3.4E-42 T 13-10-2018 trd_0285 fc49748418712dba6311c7e46f06ac33 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 25 270 2.9E-53 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_0285 fc49748418712dba6311c7e46f06ac33 272 Gene3D G3DSA:1.10.12.10 216 272 1.0E-9 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal trd_0285 fc49748418712dba6311c7e46f06ac33 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 114 134 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 trd_0285 fc49748418712dba6311c7e46f06ac33 272 SUPERFAMILY SSF52096 13 271 8.2E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_0285 fc49748418712dba6311c7e46f06ac33 272 Gene3D G3DSA:3.90.226.10 6 215 1.8E-66 T 13-10-2018 trd_0428 c77136bcb150c95c9987aa99be337c7c 209 Gene3D G3DSA:3.90.870.10 3 207 1.3E-70 T 13-10-2018 trd_0428 c77136bcb150c95c9987aa99be337c7c 209 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 11 204 1.6E-54 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 trd_0428 c77136bcb150c95c9987aa99be337c7c 209 SUPERFAMILY SSF55821 11 204 2.96E-58 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily trd_0428 c77136bcb150c95c9987aa99be337c7c 209 Pfam PF01300 Telomere recombination 17 193 1.0E-49 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 trd_A0729 843c7a4d908597cd0386e76b75518a31 547 Gene3D G3DSA:1.20.1250.20 296 517 6.7E-15 T 13-10-2018 trd_A0729 843c7a4d908597cd0386e76b75518a31 547 Pfam PF07690 Major Facilitator Superfamily 53 443 2.6E-44 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0729 843c7a4d908597cd0386e76b75518a31 547 Gene3D G3DSA:1.20.1720.10 50 266 6.9E-48 T 13-10-2018 trd_A0729 843c7a4d908597cd0386e76b75518a31 547 SUPERFAMILY SSF103473 49 453 1.7E-59 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF10385 RNA polymerase beta subunit external 1 domain 538 601 3.1E-22 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04565 RNA polymerase Rpb2, domain 3 403 471 1.6E-31 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 SUPERFAMILY SSF64484 26 1136 0.0 T 13-10-2018 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.270.10 731 769 1.9E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04560 RNA polymerase Rpb2, domain 7 1052 1126 3.8E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1100.10 588 658 4.2E-21 T 13-10-2018 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1100.10 32 157 6.9E-45 T 13-10-2018 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1110.10 158 328 6.2E-61 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.50.150 770 911 1.8E-60 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.50.100 659 730 4.6E-30 T 13-10-2018 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04563 RNA polymerase beta subunit 41 384 1.8E-20 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF00562 RNA polymerase Rpb2, domain 6 662 1050 1.6E-168 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1100.10 329 499 8.1E-67 T 13-10-2018 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 27 1128 12.482 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04561 RNA polymerase Rpb2, domain 2 152 343 3.7E-33 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 ProSitePatterns PS01166 RNA polymerases beta chain signature. 903 915 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.270.10 962 1028 1.7E-28 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0991 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1800.10 1038 1091 1.5E-10 T 13-10-2018 trd_A0627 c4fa16e7541b6a64677319d9ac265ea8 516 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 102 213 7.4E-7 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 33.741 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 6 305 1.2E-85 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 Pfam PF02911 Formyl transferase, C-terminal domain 209 304 1.2E-26 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 Pfam PF00551 Formyl transferase 6 184 3.7E-41 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 Gene3D G3DSA:3.40.50.170 1 210 9.0E-78 T 13-10-2018 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 SUPERFAMILY SSF50486 209 311 9.89E-28 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 SUPERFAMILY SSF53328 5 210 1.7E-62 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_0824 a264c8af0b0f7c9d1962f50259ccb7db 313 Gene3D G3DSA:3.10.25.10 211 311 1.4E-28 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF04607 Region found in RelA / SpoT proteins 238 347 2.4E-38 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:3.30.70.260 632 714 2.9E-20 T 13-10-2018 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF02824 TGS domain 393 452 1.2E-26 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 SMART SM00471 35 156 1.7E-10 T 13-10-2018 IPR003607 HD/PDEase domain trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF13291 ACT domain 632 708 5.8E-21 T 13-10-2018 IPR002912 ACT domain trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 SMART SM00954 238 348 1.5E-62 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:3.30.460.10 196 328 7.0E-50 T 13-10-2018 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:3.10.20.30 386 458 1.2E-34 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 20 708 4.7E-241 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:1.10.3210.10 2 194 2.8E-83 T 13-10-2018 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF109604 7 194 2.51E-75 T 13-10-2018 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF81271 380 453 3.27E-24 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF55021 633 710 3.24E-15 T 13-10-2018 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF81301 195 370 1.8E-64 T 13-10-2018 trd_1711 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF13328 HD domain 20 178 1.2E-58 T 13-10-2018 IPR003607 HD/PDEase domain trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 201 6.6E-84 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 SUPERFAMILY SSF55821 3 205 6.87E-83 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily trd_0504 0a5816e88f71ae9055192b2933f0627f 417 PIRSF PIRSF001259 2 409 4.5E-170 T 13-10-2018 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 SUPERFAMILY SSF142695 210 378 1.57E-69 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 202 1.3E-76 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Gene3D G3DSA:3.40.50.10990 210 379 7.6E-77 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 207 402 42.842 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Pfam PF00925 GTP cyclohydrolase II 212 376 4.3E-71 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 211 400 2.9E-78 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 2 206 39.561 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 3 398 52.03 T 13-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 trd_0504 0a5816e88f71ae9055192b2933f0627f 417 Gene3D G3DSA:3.90.870.10 1 209 4.8E-89 T 13-10-2018 trd_1889 e0232a38ff12ca832b37599c4a582291 93 SUPERFAMILY SSF55248 2 92 1.12E-33 T 13-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 trd_1889 e0232a38ff12ca832b37599c4a582291 93 Gene3D G3DSA:3.30.1360.20 2 93 1.2E-32 T 13-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 trd_1889 e0232a38ff12ca832b37599c4a582291 93 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 1 92 24.47 T 13-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 trd_1889 e0232a38ff12ca832b37599c4a582291 93 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 3 90 4.3E-32 T 13-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 461 1.5E-107 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 SUPERFAMILY SSF64518 148 461 1.28E-25 T 13-10-2018 trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 Pfam PF00460 Flagella basal body rod protein 6 35 1.1E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 395 461 2.4E-13 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 3.7E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 PRINTS PR01005 Flagellar hook-associated protein signature 165 189 3.7E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 trd_A0048 3d8b700763f39518ff4ff907e06f62ea 468 PRINTS PR01005 Flagellar hook-associated protein signature 132 152 3.7E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 trd_A0922 4aff9d9ec5c87cae9fe9f5b66e9e10ff 103 SUPERFAMILY SSF56029 5 99 7.59E-23 T 13-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 trd_A0922 4aff9d9ec5c87cae9fe9f5b66e9e10ff 103 Gene3D G3DSA:3.90.56.10 3 101 2.7E-30 T 13-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 trd_A0922 4aff9d9ec5c87cae9fe9f5b66e9e10ff 103 ProDom PD004249 MONOOXYGENASE COMPONENT HYDROXYLASE MMOB/DMPM PHENOL SUBUNIT 3D-STRUCTURE HYDROCARBONS IRON PHENOLHYDROXYLASE 21 93 2.0E-16 T 13-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 trd_A0922 4aff9d9ec5c87cae9fe9f5b66e9e10ff 103 Pfam PF02406 MmoB/DmpM family 10 97 3.0E-25 T 13-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 trd_0869 cde031362bc6671c883e72bc4d5c02f5 390 Pfam PF10103 Zincin-like metallopeptidase 38 381 1.8E-85 T 13-10-2018 IPR018766 Zinicin-like metallopeptidase type 2 trd_0869 cde031362bc6671c883e72bc4d5c02f5 390 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 38 384 1.4E-78 T 13-10-2018 IPR018766 Zinicin-like metallopeptidase type 2 trd_0869 cde031362bc6671c883e72bc4d5c02f5 390 Gene3D G3DSA:1.20.150.30 37 168 8.6E-36 T 13-10-2018 trd_0869 cde031362bc6671c883e72bc4d5c02f5 390 SUPERFAMILY SSF55486 37 384 1.83E-88 T 13-10-2018 trd_0869 cde031362bc6671c883e72bc4d5c02f5 390 TIGRFAM TIGR03883 DUF2342_F420: uncharacterized protein, coenzyme F420 biosynthesis associated 38 385 9.7E-124 T 13-10-2018 IPR022454 Conserved hypothetical protein CHP03883, F420 biosynthesis associated trd_0845 1b20cb5ec9f5f1f4d1fab0830c0fc7ac 528 Pfam PF01943 Polysaccharide biosynthesis protein 51 322 6.7E-28 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 trd_0845 1b20cb5ec9f5f1f4d1fab0830c0fc7ac 528 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 373 502 4.2E-11 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain trd_0125 8238fadbf5d669f5ea49f7f1679ed188 511 Gene3D G3DSA:1.10.10.2840 375 496 1.1E-20 T 13-10-2018 trd_0125 8238fadbf5d669f5ea49f7f1679ed188 511 Pfam PF07905 Purine catabolism regulatory protein-like family 7 123 9.9E-30 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain trd_0125 8238fadbf5d669f5ea49f7f1679ed188 511 SUPERFAMILY SSF46689 439 470 2.37E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 trd_0125 8238fadbf5d669f5ea49f7f1679ed188 511 Pfam PF13556 PucR C-terminal helix-turn-helix domain 434 492 9.7E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain trd_0144 0bccb1015db031b2ad6b57e0fe6e53d7 145 Gene3D G3DSA:2.40.50.100 7 140 4.9E-37 T 13-10-2018 trd_0144 0bccb1015db031b2ad6b57e0fe6e53d7 145 Pfam PF01597 Glycine cleavage H-protein 15 132 1.5E-34 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate trd_0144 0bccb1015db031b2ad6b57e0fe6e53d7 145 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 55 84 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 trd_0144 0bccb1015db031b2ad6b57e0fe6e53d7 145 SUPERFAMILY SSF51230 10 123 1.83E-30 T 13-10-2018 IPR011053 Single hybrid motif trd_0144 0bccb1015db031b2ad6b57e0fe6e53d7 145 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 10 138 31.698 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 SUPERFAMILY SSF56519 182 369 1.31E-34 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.30.1390.30 209 280 9.4E-39 T 13-10-2018 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.90.1310.10 190 364 9.4E-39 T 13-10-2018 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 SUPERFAMILY SSF54427 72 178 5.4E-15 T 13-10-2018 IPR032710 NTF2-like domain superfamily trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.10.450.100 69 176 1.1E-7 T 13-10-2018 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 70 181 1.7E-11 T 13-10-2018 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.40.710.10 369 721 2.6E-101 T 13-10-2018 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Pfam PF00905 Penicillin binding protein transpeptidase domain 387 715 8.9E-70 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 SUPERFAMILY SSF56601 370 718 1.76E-91 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 182 717 2.0E-151 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 trd_1373 7f94a4bdc00995ae6f10729a25c90ee6 725 Pfam PF03717 Penicillin-binding Protein dimerisation domain 189 351 2.9E-24 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 trd_1411 d2fee961fc8a4d52421c166bc917f732 435 Gene3D G3DSA:3.40.50.2000 254 407 6.1E-40 T 13-10-2018 trd_1411 d2fee961fc8a4d52421c166bc917f732 435 SUPERFAMILY SSF53756 6 424 3.56E-71 T 13-10-2018 trd_1411 d2fee961fc8a4d52421c166bc917f732 435 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 264 397 6.4E-14 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 trd_1411 d2fee961fc8a4d52421c166bc917f732 435 Gene3D G3DSA:3.40.50.2000 1 249 1.0E-25 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 Pfam PF00361 Proton-conducting membrane transporter 136 424 1.1E-83 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 4.1E-65 T 13-10-2018 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 6.8E-14 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 6.8E-14 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 6.8E-14 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 416 438 6.8E-14 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 9 623 2.8E-226 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1787 cbba99cb70c2a12aad402ba0eb8b54cf 633 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 2.6E-25 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 SUPERFAMILY SSF51905 97 456 3.54E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 133 143 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 SUPERFAMILY SSF55008 8 78 2.36E-7 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 Gene3D G3DSA:3.30.390.30 436 560 2.9E-33 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PIRSF PIRSF000350 10 560 7.3E-178 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 Gene3D G3DSA:3.50.50.60 100 423 5.5E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 TIGRFAM TIGR02053 MerA: mercury(II) reductase 100 560 1.3E-162 T 13-10-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 382 404 7.2E-29 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 120 7.2E-29 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 353 369 7.2E-29 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 283 7.2E-29 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 226 244 7.2E-29 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 100 417 2.4E-63 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 Gene3D G3DSA:3.30.70.100 13 73 3.6E-6 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 SUPERFAMILY SSF55424 435 558 1.24E-26 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 238 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 354 368 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 100 122 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 454 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 290 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 520 540 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 132 147 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 397 404 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 498 513 5.5E-64 T 13-10-2018 trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 Gene3D G3DSA:3.50.50.60 238 360 5.5E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0380 b67ba9375e61e2ad332b744a61c61590 560 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 437 545 9.7E-22 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 SUPERFAMILY SSF52540 158 426 1.57E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 630 38.002 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 Gene3D G3DSA:3.40.50.300 150 331 6.6E-72 T 13-10-2018 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 Pfam PF01434 Peptidase family M41 394 600 7.3E-81 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 SMART SM00382 195 334 1.5E-25 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 SUPERFAMILY SSF140990 414 607 1.05E-73 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 112 602 2.2E-235 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 199 330 3.0E-45 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 Gene3D G3DSA:1.10.8.60 333 410 2.0E-31 T 13-10-2018 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 Gene3D G3DSA:1.20.58.760 414 610 1.8E-77 T 13-10-2018 trd_0293 13eb85bc1d2a1b33aebadf44e237a396 652 ProSitePatterns PS00674 AAA-protein family signature. 302 320 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 SUPERFAMILY SSF56112 6 272 9.31E-88 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF00069 Protein kinase domain 10 264 1.4E-54 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:1.10.510.10 91 276 4.3E-57 T 13-10-2018 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:3.30.200.20 1 89 3.5E-33 T 13-10-2018 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:3.30.10.20 462 523 3.8E-9 T 13-10-2018 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF03793 PASTA domain 397 457 3.0E-12 T 13-10-2018 IPR005543 PASTA domain trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF03793 PASTA domain 467 521 9.6E-8 T 13-10-2018 IPR005543 PASTA domain trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF03793 PASTA domain 526 597 2.4E-5 T 13-10-2018 IPR005543 PASTA domain trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 SMART SM00220 10 267 4.9E-77 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 SMART SM00740 391 457 5.8E-10 T 13-10-2018 IPR005543 PASTA domain trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 SMART SM00740 458 522 9.1E-8 T 13-10-2018 IPR005543 PASTA domain trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:3.30.10.20 524 599 7.6E-7 T 13-10-2018 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:3.30.10.20 393 460 5.0E-17 T 13-10-2018 trd_1313 8eb982a171edc8b913dc8be8a6f8c98f 604 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 trd_0105 797036458088055b0531844648738e11 275 Gene3D G3DSA:3.20.20.70 1 272 9.6E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0105 797036458088055b0531844648738e11 275 SUPERFAMILY SSF51366 18 264 4.05E-77 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0105 797036458088055b0531844648738e11 275 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 6 266 34.207 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 trd_0105 797036458088055b0531844648738e11 275 Pfam PF00218 Indole-3-glycerol phosphate synthase 8 264 6.7E-84 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 trd_0105 797036458088055b0531844648738e11 275 Hamap MF_00134_A Indole-3-glycerol phosphate synthase [trpC]. 37 262 29.903 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 trd_A0223 f4ec9919526abc7804969d0d8a03cbf5 222 TIGRFAM TIGR01076 sortase_fam: sortase 114 215 1.3E-13 T 13-10-2018 IPR005754 Sortase family trd_A0223 f4ec9919526abc7804969d0d8a03cbf5 222 SUPERFAMILY SSF63817 81 215 1.2E-23 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0223 f4ec9919526abc7804969d0d8a03cbf5 222 Gene3D G3DSA:2.40.260.10 38 220 1.5E-31 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0223 f4ec9919526abc7804969d0d8a03cbf5 222 Pfam PF04203 Sortase family 84 215 2.7E-21 T 13-10-2018 IPR005754 Sortase family trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 Pfam PF07650 KH domain 40 112 1.9E-20 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 2 210 1.7E-86 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 SMART SM00322 61 126 5.5E-10 T 13-10-2018 IPR004087 K Homology domain GO:0003676 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 207 35.668 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 SUPERFAMILY SSF54821 109 207 2.22E-36 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 Pfam PF00189 Ribosomal protein S3, C-terminal domain 121 203 1.2E-31 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 Gene3D G3DSA:3.30.1140.32 109 209 1.6E-36 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 SUPERFAMILY SSF54814 2 107 3.66E-35 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 trd_0978 8f9a1e57be68addb3cdbe47f46dd5082 223 Gene3D G3DSA:3.30.300.20 17 108 7.1E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_1316 bfba6c66b8d6ff1b89e1ce25456ac927 537 Gene3D G3DSA:1.20.1740.10 23 527 5.1E-26 T 13-10-2018 trd_1316 bfba6c66b8d6ff1b89e1ce25456ac927 537 Pfam PF13520 Amino acid permease 54 488 1.5E-23 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_1316 bfba6c66b8d6ff1b89e1ce25456ac927 537 PIRSF PIRSF006060 11 536 6.8E-37 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 4.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 4.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 4.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 4.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 5.8E-8 T 13-10-2018 trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 1.3E-73 T 13-10-2018 trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.1E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.1E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 2.7E-101 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 Gene3D G3DSA:3.40.50.720 5 248 1.0E-89 T 13-10-2018 trd_1621 ca8de683c2c3e13258e0a4d863df58da 249 SUPERFAMILY SSF51735 8 247 6.92E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 106 1.6E-40 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 PIRSF PIRSF000077 1 107 2.7E-43 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 Gene3D G3DSA:3.40.30.10 5 107 5.2E-38 T 13-10-2018 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 SUPERFAMILY SSF52833 3 107 6.12E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 Pfam PF00085 Thioredoxin 5 106 4.1E-33 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 PRINTS PR00421 Thioredoxin family signature 71 82 1.2E-9 T 13-10-2018 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 PRINTS PR00421 Thioredoxin family signature 23 31 1.2E-9 T 13-10-2018 trd_0071 ee0f76319579d9ccdc8a0ca048d472ad 107 PRINTS PR00421 Thioredoxin family signature 31 40 1.2E-9 T 13-10-2018 trd_0089 d2aa82772d7b9b50844e49e254459943 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 63 17.694 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0089 d2aa82772d7b9b50844e49e254459943 63 SUPERFAMILY SSF143800 3 59 4.51E-25 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0089 d2aa82772d7b9b50844e49e254459943 63 Gene3D G3DSA:2.30.170.40 2 63 5.8E-23 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0089 d2aa82772d7b9b50844e49e254459943 63 Pfam PF00830 Ribosomal L28 family 3 58 1.4E-27 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0089 d2aa82772d7b9b50844e49e254459943 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 55 5.2E-23 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 4.9E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 4.9E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 4.9E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 219 4.9E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 205 4.9E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 SUPERFAMILY SSF48163 317 490 2.35E-41 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 6 488 3.8E-162 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 323 5.2E-102 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 SUPERFAMILY SSF52374 6 316 1.58E-116 T 13-10-2018 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:1.10.10.350 390 501 1.9E-30 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:3.40.50.620 1 331 1.3E-150 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1890 039ec6866dae8e7f5ca8f10e5764e370 506 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 5 490 34.111 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 ProSitePatterns PS00450 Aconitase family signature 1. 458 474 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 Gene3D G3DSA:1.10.1440.20 622 683 1.1E-21 T 13-10-2018 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 Gene3D G3DSA:3.30.499.10 377 621 1.9E-96 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 524 537 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 149 162 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 173 181 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 376 390 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 206 219 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 220 235 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 296 309 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 462 473 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 PRINTS PR00415 Aconitase family signature 282 295 1.3E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 SUPERFAMILY SSF53732 7 658 2.62E-216 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 SUPERFAMILY SSF52016 662 923 1.2E-87 T 13-10-2018 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 Gene3D G3DSA:3.20.19.10 684 924 9.5E-107 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 Pfam PF00330 Aconitase family (aconitate hydratase) 80 593 1.0E-174 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 Gene3D G3DSA:3.30.499.20 9 376 3.0E-152 T 13-10-2018 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 Pfam PF00694 Aconitase C-terminal domain 723 849 1.3E-45 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 trd_A0562 0aff73010222b32adffa0c33b2219c90 927 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 22 923 0.0 T 13-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 SMART SM00534 627 816 8.7E-122 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 25 877 1.7E-297 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Gene3D G3DSA:1.10.1420.10 287 578 1.0E-99 T 13-10-2018 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Pfam PF05188 MutS domain II 145 273 1.6E-16 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Pfam PF01624 MutS domain I 25 134 8.1E-38 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 SUPERFAMILY SSF48334 288 581 1.44E-83 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Gene3D G3DSA:3.30.420.110 144 283 1.1E-31 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 SUPERFAMILY SSF55271 22 131 1.96E-35 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Pfam PF05192 MutS domain III 291 577 4.3E-40 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Pfam PF00488 MutS domain V 630 819 2.6E-84 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 24 872 24.689 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Gene3D G3DSA:3.40.50.300 586 855 2.9E-105 T 13-10-2018 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 SUPERFAMILY SSF53150 130 287 1.96E-35 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Pfam PF05190 MutS family domain IV 446 537 1.4E-28 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Gene3D G3DSA:1.10.1420.10 412 553 1.0E-99 T 13-10-2018 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 Gene3D G3DSA:3.40.1170.10 17 137 3.1E-42 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 PIRSF PIRSF037677 15 854 1.9E-173 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 SMART SM00533 304 609 3.6E-95 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 708 724 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_1109 74843f4ea54cb3e3003b62cccee5fcac 884 SUPERFAMILY SSF52540 585 820 7.83E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 96 111 5.1E-5 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 163 177 5.1E-5 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 235 247 5.1E-5 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 106 111 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 Pfam PF00089 Trypsin 86 263 3.5E-8 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 SUPERFAMILY SSF50494 44 279 5.71E-26 T 13-10-2018 IPR009003 Peptidase S1, PA clan trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 Gene3D G3DSA:2.40.10.10 76 184 4.4E-40 T 13-10-2018 trd_1905 9ba7c65e55e8038b41d204f8ad8e9dd7 564 Gene3D G3DSA:2.40.10.10 63 260 4.4E-40 T 13-10-2018 trd_0754 86f01208f47c1106af338e289555c81d 460 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 235 250 1.7E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 186 206 1.7E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 Gene3D G3DSA:3.40.50.300 179 358 5.2E-53 T 13-10-2018 trd_0754 86f01208f47c1106af338e289555c81d 460 Pfam PF01926 50S ribosome-binding GTPase 185 303 7.7E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 Pfam PF01926 50S ribosome-binding GTPase 5 127 1.5E-28 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 SUPERFAMILY SSF52540 4 172 7.2E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0754 86f01208f47c1106af338e289555c81d 460 Gene3D G3DSA:3.30.300.20 363 446 2.4E-36 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_0754 86f01208f47c1106af338e289555c81d 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 166 4.4E-26 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 184 352 7.6E-28 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 SUPERFAMILY SSF52540 145 447 3.05E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0754 86f01208f47c1106af338e289555c81d 460 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 443 2.8E-167 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 SMART SM00382 182 325 0.65 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0754 86f01208f47c1106af338e289555c81d 460 SMART SM00382 2 145 0.89 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0754 86f01208f47c1106af338e289555c81d 460 PIRSF PIRSF006485 2 450 1.1E-167 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 Gene3D G3DSA:3.40.50.300 3 170 1.0E-45 T 13-10-2018 trd_0754 86f01208f47c1106af338e289555c81d 460 Hamap MF_00195 GTPase Der [der]. 3 446 40.246 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 trd_0754 86f01208f47c1106af338e289555c81d 460 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 363 443 8.3E-36 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like trd_0778 a9a68322be10cbea1d660110b30d7fde 340 Gene3D G3DSA:3.30.360.10 153 317 1.7E-155 T 13-10-2018 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 7.6E-37 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 SUPERFAMILY SSF55347 154 316 1.58E-73 T 13-10-2018 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 PIRSF PIRSF000149 1 335 1.7E-138 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 315 1.0E-69 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 327 4.8E-139 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 SMART SM00846 3 154 7.5E-94 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 Gene3D G3DSA:3.40.50.720 4 330 1.7E-155 T 13-10-2018 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 SUPERFAMILY SSF51735 3 170 4.86E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0778 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 4.7E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 4.7E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 4.7E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 4.7E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0778 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 4.7E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1902 2f812ffbdc0c71a18c0c65a83ea6569e 251 SUPERFAMILY SSF102588 7 242 9.55E-56 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_1902 2f812ffbdc0c71a18c0c65a83ea6569e 251 Pfam PF02585 GlcNAc-PI de-N-acetylase 11 149 2.7E-33 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 trd_1902 2f812ffbdc0c71a18c0c65a83ea6569e 251 Gene3D G3DSA:3.40.50.10320 1 245 9.8E-73 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 Gene3D G3DSA:3.40.50.2020 8 300 1.3E-122 T 13-10-2018 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 311 7.7E-28 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 5 121 1.4E-47 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 312 4.9E-121 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 5 312 46.225 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 SMART SM01400 5 121 5.5E-73 T 13-10-2018 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 Gene3D G3DSA:3.40.50.2020 148 288 1.3E-122 T 13-10-2018 trd_0032 eb8dde90aa8ff0c53b4e6d509077f169 312 SUPERFAMILY SSF53271 70 302 1.51E-60 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 SUPERFAMILY SSF52096 498 730 5.17E-13 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 Gene3D G3DSA:3.40.50.720 1 187 2.9E-41 T 13-10-2018 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 Gene3D G3DSA:1.10.1040.10 188 295 3.7E-17 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 SUPERFAMILY SSF51735 2 185 3.2E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 SUPERFAMILY SSF48179 185 292 2.89E-20 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 532 552 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 281 3.8E-13 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 SUPERFAMILY SSF48179 331 410 1.28E-6 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 Gene3D G3DSA:3.90.226.10 470 619 2.6E-9 T 13-10-2018 trd_A0098 8fd2484713edfcd15b9f65e71dd98a10 737 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 4 183 4.8E-34 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 trd_1818 050a6f64502560ec4dabc10ecc261427 488 SMART SM00962 100 295 2.2E-112 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Gene3D G3DSA:3.40.50.300 90 284 1.1E-127 T 13-10-2018 trd_1818 050a6f64502560ec4dabc10ecc261427 488 SMART SM00382 99 273 3.7E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1818 050a6f64502560ec4dabc10ecc261427 488 SUPERFAMILY SSF52540 42 352 7.7E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1818 050a6f64502560ec4dabc10ecc261427 488 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 426 1.5E-186 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 444 35.183 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 SUPERFAMILY SSF47446 326 428 5.72E-39 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 7.2E-23 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Pfam PF02978 Signal peptide binding domain 326 425 2.7E-36 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Gene3D G3DSA:1.10.260.30 307 437 1.8E-45 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 SMART SM00963 1 86 1.3E-35 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Gene3D G3DSA:1.20.120.140 5 305 1.1E-127 T 13-10-2018 trd_1818 050a6f64502560ec4dabc10ecc261427 488 Pfam PF00448 SRP54-type protein, GTPase domain 100 295 3.3E-74 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1818 050a6f64502560ec4dabc10ecc261427 488 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1540 b1cb3bf31265a0fbc246264db1b4ab06 346 PIRSF PIRSF016838 13 62 0.99 T 13-10-2018 IPR028349 Protein PafC trd_1540 b1cb3bf31265a0fbc246264db1b4ab06 346 PIRSF PIRSF016838 79 337 6.5E-31 T 13-10-2018 IPR028349 Protein PafC trd_1540 b1cb3bf31265a0fbc246264db1b4ab06 346 SUPERFAMILY SSF46785 19 77 1.77E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1540 b1cb3bf31265a0fbc246264db1b4ab06 346 Pfam PF13280 WYL domain 153 328 2.2E-43 T 13-10-2018 IPR026881 WYL domain trd_1540 b1cb3bf31265a0fbc246264db1b4ab06 346 Gene3D G3DSA:1.10.10.10 10 77 3.5E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1540 b1cb3bf31265a0fbc246264db1b4ab06 346 Pfam PF08279 HTH domain 20 74 8.4E-5 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Pfam PF02772 S-adenosylmethionine synthetase, central domain 135 251 1.9E-43 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Gene3D G3DSA:3.30.300.10 16 253 9.6E-167 T 13-10-2018 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 253 392 1.0E-65 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 SUPERFAMILY SSF55973 253 404 1.61E-66 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 PIRSF PIRSF000497 8 403 3.8E-162 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 16 400 2.5E-166 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 14 111 1.2E-36 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 279 287 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Gene3D G3DSA:3.30.300.10 21 290 9.6E-167 T 13-10-2018 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 12 403 54.8 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 SUPERFAMILY SSF55973 14 120 4.32E-40 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 Gene3D G3DSA:3.30.300.10 112 395 9.6E-167 T 13-10-2018 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 136 146 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0917 dfc586ea70556862ff58c3f8a5b45375 412 SUPERFAMILY SSF55973 130 252 3.18E-48 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 trd_0336 e7da7851ab3d5c1a60cd239591402a1f 335 Gene3D G3DSA:3.30.540.10 10 313 1.5E-131 T 13-10-2018 trd_0336 e7da7851ab3d5c1a60cd239591402a1f 335 SUPERFAMILY SSF56655 4 315 3.66E-110 T 13-10-2018 trd_0336 e7da7851ab3d5c1a60cd239591402a1f 335 PIRSF PIRSF004532 4 324 5.4E-142 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 trd_0336 e7da7851ab3d5c1a60cd239591402a1f 335 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 6 313 1.8E-140 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 trd_0336 e7da7851ab3d5c1a60cd239591402a1f 335 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 5 320 1.5E-115 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 trd_0336 e7da7851ab3d5c1a60cd239591402a1f 335 Gene3D G3DSA:3.40.190.90 126 287 1.5E-131 T 13-10-2018 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 Gene3D G3DSA:3.20.190.10 2 145 1.8E-28 T 13-10-2018 IPR035937 MutM-like, N-terminal trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 3.6E-29 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 SUPERFAMILY SSF57716 234 287 3.99E-14 T 13-10-2018 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 SUPERFAMILY SSF46946 145 235 1.44E-29 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 SMART SM01232 146 238 4.7E-46 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 SMART SM00898 2 132 6.6E-23 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 146 235 3.0E-26 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 286 1.3E-73 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 ProSitePatterns PS01242 Zinc finger FPG-type signature. 262 286 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 SUPERFAMILY SSF81624 2 151 3.4E-28 T 13-10-2018 IPR035937 MutM-like, N-terminal trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 287 38.014 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 Gene3D G3DSA:1.10.8.50 148 287 4.1E-49 T 13-10-2018 trd_1895 c8004f1f9396c1201a27caa0dd139cf7 289 Pfam PF06827 Zinc finger found in FPG and IleRS 261 287 2.0E-11 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 trd_0659 e10753974e4ac04c3ed34eb6e0fe0f2e 385 SUPERFAMILY SSF53756 30 380 9.42E-78 T 13-10-2018 trd_0659 e10753974e4ac04c3ed34eb6e0fe0f2e 385 Gene3D G3DSA:3.40.50.2000 24 184 1.0E-22 T 13-10-2018 trd_0659 e10753974e4ac04c3ed34eb6e0fe0f2e 385 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 118 340 1.1E-39 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 trd_0659 e10753974e4ac04c3ed34eb6e0fe0f2e 385 Gene3D G3DSA:3.40.50.2000 206 382 7.7E-52 T 13-10-2018 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 ProSitePatterns PS00761 Signal peptidases I signature 3. 172 185 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 SUPERFAMILY SSF51306 47 213 4.71E-54 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 ProSitePatterns PS00760 Signal peptidases I lysine active site. 121 133 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 29 207 2.0E-46 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 Pfam PF00717 Peptidase S24-like 49 143 2.2E-19 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 Gene3D G3DSA:2.10.109.10 98 213 8.8E-38 T 13-10-2018 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 ProSitePatterns PS00501 Signal peptidases I serine active site. 52 59 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 119 131 8.3E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 167 186 8.3E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 trd_0788 2875663cc1bd17f750b9d7d8580f28c3 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 43 59 8.3E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 1.3E-70 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1230 eba4b1a4a3886600139750f12a84633a 510 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Gene3D G3DSA:1.20.150.20 372 500 7.0E-50 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1230 eba4b1a4a3886600139750f12a84633a 510 PIRSF PIRSF039088 1 502 2.3E-248 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 24 92 1.9E-17 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Gene3D G3DSA:2.40.30.20 1 93 1.0E-34 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 496 2.4E-48 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 501 50.543 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1230 eba4b1a4a3886600139750f12a84633a 510 SUPERFAMILY SSF50615 10 94 1.28E-28 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_1230 eba4b1a4a3886600139750f12a84633a 510 SUPERFAMILY SSF47917 373 500 9.94E-45 T 13-10-2018 trd_1230 eba4b1a4a3886600139750f12a84633a 510 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 499 5.9E-249 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1230 eba4b1a4a3886600139750f12a84633a 510 Gene3D G3DSA:3.40.50.300 94 371 1.1E-123 T 13-10-2018 trd_1230 eba4b1a4a3886600139750f12a84633a 510 SUPERFAMILY SSF52540 96 370 5.96E-98 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0607 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 Gene3D G3DSA:3.20.20.80 78 398 3.4E-56 T 13-10-2018 trd_0607 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 SUPERFAMILY SSF51445 64 396 9.72E-60 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_0607 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 Pfam PF02449 Beta-galactosidase 83 142 9.7E-6 T 13-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 SUPERFAMILY SSF51735 1 257 2.83E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 258 28.615 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 Gene3D G3DSA:3.40.50.720 3 255 1.9E-77 T 13-10-2018 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 120 9.5E-27 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 257 3.2E-61 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 PIRSF PIRSF000161 1 258 3.0E-72 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 Gene3D G3DSA:3.30.360.10 122 227 1.9E-77 T 13-10-2018 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 144 161 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 SUPERFAMILY SSF55347 122 229 2.4E-24 T 13-10-2018 trd_0413 c46d9d2831ef96d1c3e3a3db03b38401 258 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 123 256 2.7E-33 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0010 16b8e175f5cff5304e5a5bfd8c4f4896 281 SMART SM00934 17 256 6.4E-47 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_0010 16b8e175f5cff5304e5a5bfd8c4f4896 281 SUPERFAMILY SSF51366 3 264 1.06E-79 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0010 16b8e175f5cff5304e5a5bfd8c4f4896 281 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 251 3.1E-26 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_0010 16b8e175f5cff5304e5a5bfd8c4f4896 281 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 255 7.4E-73 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0010 16b8e175f5cff5304e5a5bfd8c4f4896 281 Gene3D G3DSA:3.20.20.70 1 271 4.0E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0010 16b8e175f5cff5304e5a5bfd8c4f4896 281 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 269 33.089 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0141 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 1343 1428 2.27E-13 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 579 710 1.8E-6 T 13-10-2018 trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.120.260 528 711 1.6E-6 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily trd_0141 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49899 1481 1610 1.85E-6 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 1343 1437 1.6E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 439 527 2.8E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 891 978 7.2E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_0141 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF56300 174 385 3.8E-35 T 13-10-2018 trd_0141 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49899 582 710 1.74E-6 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:3.60.21.10 171 418 9.0E-32 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.120.200 1438 1617 1.0E-9 T 13-10-2018 trd_0141 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 59 150 6.9E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_0141 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 892 1338 1.44E-15 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 Pfam PF00149 Calcineurin-like phosphoesterase 175 352 2.9E-10 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_0141 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 439 528 1.35E-13 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 805 875 47.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 442 517 1.0E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 718 791 55.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 1344 1417 5.5E-6 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 1170 1241 59.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 893 968 3.5E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_0141 95951a80686d9977e939f17589df160b 1617 SMART SM00060 1243 1328 12.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 Pfam PF00581 Rhodanese-like domain 23 113 5.7E-19 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 Gene3D G3DSA:3.40.50.720 125 375 2.8E-95 T 13-10-2018 trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 SUPERFAMILY SSF52821 8 123 4.45E-38 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 SMART SM00450 20 117 7.5E-26 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 Gene3D G3DSA:3.40.250.10 1 122 4.6E-36 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 SUPERFAMILY SSF69572 120 388 1.44E-98 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 trd_1309 d76c52d58429e4a536f1df7e4e44002f 398 Pfam PF00899 ThiF family 132 365 4.4E-68 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 trd_A0921 9c6b125468c5d1508600c2919fd7fd90 121 Gene3D G3DSA:2.102.10.10 8 116 6.7E-26 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_A0921 9c6b125468c5d1508600c2919fd7fd90 121 SUPERFAMILY SSF50022 8 114 1.7E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_A0921 9c6b125468c5d1508600c2919fd7fd90 121 Pfam PF00355 Rieske [2Fe-2S] domain 8 86 7.5E-13 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF08264 Anticodon-binding domain of tRNA 665 786 4.8E-22 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 228 414 3.9E-71 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 428 618 9.6E-25 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:3.40.50.620 43 585 8.6E-273 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF52374 12 636 9.81E-149 T 13-10-2018 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:3.90.740.10 235 426 8.6E-273 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:1.10.730.10 612 760 3.5E-53 T 13-10-2018 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:2.30.210.10 586 600 8.6E-273 T 13-10-2018 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 12 824 23.018 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 13 824 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF47323 632 825 1.74E-39 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:3.10.20.590 765 825 2.0E-21 T 13-10-2018 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF50677 234 426 5.65E-53 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 136 153 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 194 207 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 162 178 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 499 517 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 538 560 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 571 581 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 222 241 3.8E-49 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 trd_1240 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF09334 tRNA synthetases class I (M) 50 193 1.4E-23 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_A0743 ecb0d3827d24da3710330a0243635eff 200 SUPERFAMILY SSF53335 7 199 6.72E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_A0743 ecb0d3827d24da3710330a0243635eff 200 Pfam PF13578 Methyltransferase domain 64 164 7.1E-13 T 13-10-2018 trd_A0743 ecb0d3827d24da3710330a0243635eff 200 Gene3D G3DSA:3.40.50.150 6 199 5.3E-39 T 13-10-2018 trd_1553 c6cfd74fdc11bea2503257ba71d1eaf0 127 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 111 9.9E-38 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 trd_1553 c6cfd74fdc11bea2503257ba71d1eaf0 127 SUPERFAMILY SSF89360 6 100 3.92E-32 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 trd_1553 c6cfd74fdc11bea2503257ba71d1eaf0 127 Gene3D G3DSA:2.60.300.12 6 113 1.8E-35 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 trd_1553 c6cfd74fdc11bea2503257ba71d1eaf0 127 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 93 110 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 trd_1553 c6cfd74fdc11bea2503257ba71d1eaf0 127 Pfam PF01521 Iron-sulphur cluster biosynthesis 7 107 2.0E-20 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 trd_1451 ab42966e7a6911925618811f8e296f81 658 Pfam PF00702 haloacid dehalogenase-like hydrolase 128 408 1.3E-21 T 13-10-2018 trd_1451 ab42966e7a6911925618811f8e296f81 658 Gene3D G3DSA:3.40.1110.10 192 301 2.1E-74 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_1451 ab42966e7a6911925618811f8e296f81 658 Pfam PF00122 E1-E2 ATPase 1 112 1.4E-21 T 13-10-2018 trd_1451 ab42966e7a6911925618811f8e296f81 658 Gene3D G3DSA:1.20.1110.10 439 554 2.1E-74 T 13-10-2018 trd_1451 ab42966e7a6911925618811f8e296f81 658 Gene3D G3DSA:1.20.1110.10 36 128 2.4E-37 T 13-10-2018 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 452 467 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 470 481 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 553 574 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 45 61 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 166 179 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 522 538 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 502 515 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 PRINTS PR01836 Magnesium-transporting ATPase signature 602 623 1.9E-37 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 Gene3D G3DSA:2.70.150.10 1 35 2.4E-37 T 13-10-2018 trd_1451 ab42966e7a6911925618811f8e296f81 658 Gene3D G3DSA:3.40.50.1000 302 438 2.1E-74 T 13-10-2018 IPR023214 HAD superfamily trd_1451 ab42966e7a6911925618811f8e296f81 658 Gene3D G3DSA:3.40.50.1000 129 141 2.4E-37 T 13-10-2018 IPR023214 HAD superfamily trd_1451 ab42966e7a6911925618811f8e296f81 658 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 1 639 4.6E-199 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 trd_1451 ab42966e7a6911925618811f8e296f81 658 Pfam PF00689 Cation transporting ATPase, C-terminus 477 638 8.9E-14 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 trd_1451 ab42966e7a6911925618811f8e296f81 658 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 134 140 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_1451 ab42966e7a6911925618811f8e296f81 658 SUPERFAMILY SSF81665 34 645 1.96E-63 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_1451 ab42966e7a6911925618811f8e296f81 658 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 363 483 3.8E-27 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_1451 ab42966e7a6911925618811f8e296f81 658 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 39 149 2.1E-21 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_1451 ab42966e7a6911925618811f8e296f81 658 SUPERFAMILY SSF56784 130 493 1.57E-42 T 13-10-2018 IPR036412 HAD-like superfamily trd_0494 4aa4402500347d5341fbd39278cad4e9 248 SUPERFAMILY SSF55811 13 178 1.1E-20 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_0494 4aa4402500347d5341fbd39278cad4e9 248 Gene3D G3DSA:3.90.79.10 1 192 4.8E-32 T 13-10-2018 trd_0494 4aa4402500347d5341fbd39278cad4e9 248 Pfam PF00293 NUDIX domain 53 171 6.0E-8 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_1330 de18e49ba51d586cd8e5e28f81e88866 536 Gene3D G3DSA:3.40.50.300 347 532 7.9E-37 T 13-10-2018 trd_1330 de18e49ba51d586cd8e5e28f81e88866 536 SUPERFAMILY SSF52540 347 531 3.11E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1330 de18e49ba51d586cd8e5e28f81e88866 536 SUPERFAMILY SSF56112 8 304 3.06E-13 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_1330 de18e49ba51d586cd8e5e28f81e88866 536 Pfam PF13671 AAA domain 351 497 1.1E-23 T 13-10-2018 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.40.50.11180 46 332 3.0E-62 T 13-10-2018 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF02559 CarD-like/TRCF domain 492 585 5.7E-24 T 13-10-2018 IPR003711 CarD-like/TRCF domain trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF03461 TRCF domain 1015 1097 2.9E-23 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 48 1115 27.457 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.90.1150.50 1010 1143 2.3E-26 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF52540 29 358 2.66E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF00270 DEAD/DEAH box helicase 615 772 1.6E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF00271 Helicase conserved C-terminal domain 815 919 1.1E-16 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SMART SM01058 490 586 6.2E-37 T 13-10-2018 IPR003711 CarD-like/TRCF domain trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SMART SM00487 610 800 3.6E-35 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF141259 489 552 6.41E-19 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF52540 534 794 8.89E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF52540 792 1000 2.95E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0670 c96e65bfe4279df838a308325fada0b3 1165 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 166 1087 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF143517 1002 1115 4.71E-29 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.40.50.300 552 791 5.8E-236 T 13-10-2018 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:2.30.30.840 494 551 5.8E-236 T 13-10-2018 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.40.50.300 490 1000 5.8E-236 T 13-10-2018 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.30.2060.10 149 234 3.0E-62 T 13-10-2018 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SMART SM00982 1014 1112 1.5E-28 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 trd_0670 c96e65bfe4279df838a308325fada0b3 1165 SMART SM00490 836 920 5.5E-17 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1264 677777697aa4b1201d7715446f7fb4eb 318 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 2 305 34.209 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 Gene3D G3DSA:3.40.50.1370 4 299 7.5E-108 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 Gene3D G3DSA:3.40.50.1370 132 290 7.5E-108 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 3 303 3.7E-96 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 3.9E-46 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 258 267 7.9E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 47 66 7.9E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 7.9E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 291 7.9E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 223 232 1.2E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 37 59 1.2E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 77 86 1.2E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 131 148 1.2E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 262 267 1.2E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 284 298 1.2E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 151 300 7.9E-28 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 SUPERFAMILY SSF53671 2 304 1.57E-93 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 trd_1264 677777697aa4b1201d7715446f7fb4eb 318 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 47 54 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 92 130 9.7E-15 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 SMART SM00929 92 132 2.8E-14 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:2.20.25.90 225 279 5.1E-11 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.30.70.20 136 216 6.2E-20 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 SUPERFAMILY SSF54862 143 214 3.35E-14 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 8 85 7.1E-19 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 SUPERFAMILY SSF54292 10 132 1.11E-31 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 227 278 1.9E-9 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.10.20.740 9 132 8.8E-40 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 SUPERFAMILY SSF53706 218 756 1.24E-110 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 39 56 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.40.50.740 288 758 1.4E-93 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF12838 4Fe-4S dicluster domain 154 212 2.8E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_1471 db66dc948e4e824563bfb479ed31edc7 811 SMART SM00926 225 279 4.7E-5 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF00384 Molybdopterin oxidoreductase 288 717 1.8E-30 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.40.228.10 356 562 1.4E-93 T 13-10-2018 trd_1471 db66dc948e4e824563bfb479ed31edc7 811 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 107 119 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0539 62b8c8fa17c1bec600b699c002840c32 221 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 13 215 6.0E-48 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 trd_0539 62b8c8fa17c1bec600b699c002840c32 221 Pfam PF03070 TENA/THI-4/PQQC family 9 215 3.5E-45 T 13-10-2018 IPR004305 Thiaminase-2/PQQC trd_0539 62b8c8fa17c1bec600b699c002840c32 221 SUPERFAMILY SSF48613 2 214 8.73E-70 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 trd_0539 62b8c8fa17c1bec600b699c002840c32 221 Gene3D G3DSA:1.20.910.10 1 221 4.0E-71 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 trd_1806 be47a473303273b10a373c7f10d868f5 560 Pfam PF00890 FAD binding domain 9 534 7.3E-96 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_1806 be47a473303273b10a373c7f10d868f5 560 SUPERFAMILY SSF51905 3 552 2.83E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1806 be47a473303273b10a373c7f10d868f5 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 509 524 3.5E-5 T 13-10-2018 trd_1806 be47a473303273b10a373c7f10d868f5 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 3.5E-5 T 13-10-2018 trd_1806 be47a473303273b10a373c7f10d868f5 560 SUPERFAMILY SSF56425 314 487 3.84E-36 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_1806 be47a473303273b10a373c7f10d868f5 560 Gene3D G3DSA:3.50.50.60 8 543 8.4E-161 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1806 be47a473303273b10a373c7f10d868f5 560 Gene3D G3DSA:3.90.700.10 333 482 8.4E-161 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 155 3.3E-23 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 7 155 8.3E-48 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 PIRSF PIRSF006092 1 156 5.0E-48 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Gene3D G3DSA:1.10.287.180 3 77 4.4E-28 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 SUPERFAMILY SSF54534 84 155 5.89E-19 T 13-10-2018 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 SUPERFAMILY SSF46557 5 79 2.35E-24 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Gene3D G3DSA:3.10.50.30 79 156 3.8E-23 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Hamap MF_00105 Transcription elongation factor GreA [greA]. 4 156 31.436 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 trd_1081 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 1.0E-27 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 trd_A0327 232f5fe1d0e7c481b442514e61fc8607 298 SUPERFAMILY SSF54593 5 259 7.77E-39 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0327 232f5fe1d0e7c481b442514e61fc8607 298 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 112 7.6E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0327 232f5fe1d0e7c481b442514e61fc8607 298 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 144 259 4.2E-13 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0327 232f5fe1d0e7c481b442514e61fc8607 298 Gene3D G3DSA:3.10.180.10 144 297 9.9E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0327 232f5fe1d0e7c481b442514e61fc8607 298 Gene3D G3DSA:3.10.180.10 4 129 1.2E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Gene3D G3DSA:3.30.365.10 382 745 1.3E-117 T 13-10-2018 trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 SUPERFAMILY SSF54665 4 142 1.57E-44 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 124 1.4E-31 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Gene3D G3DSA:3.90.1170.50 1 124 8.9E-45 T 13-10-2018 trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Gene3D G3DSA:3.30.365.10 127 364 4.8E-68 T 13-10-2018 trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 SUPERFAMILY SSF56003 116 751 2.36E-182 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 SMART SM01008 19 124 1.1E-47 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 171 690 3.5E-146 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Gene3D G3DSA:3.30.365.10 456 605 1.3E-117 T 13-10-2018 trd_A0400 ff5e1645ed4decb804c2956b3ace9f64 755 Gene3D G3DSA:3.30.365.10 205 298 4.8E-68 T 13-10-2018 trd_1173 c7b50dc5663f5a54a02ffd7a13dda3be 144 Pfam PF01592 NifU-like N terminal domain 11 129 8.9E-23 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 trd_1173 c7b50dc5663f5a54a02ffd7a13dda3be 144 Gene3D G3DSA:3.90.1010.10 6 137 1.4E-32 T 13-10-2018 trd_1173 c7b50dc5663f5a54a02ffd7a13dda3be 144 SUPERFAMILY SSF82649 8 129 7.06E-28 T 13-10-2018 trd_A0519 24fdaaeaaa6213335aa6d5f4681ab608 377 SUPERFAMILY SSF47240 6 67 3.41E-13 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_A0519 24fdaaeaaa6213335aa6d5f4681ab608 377 Gene3D G3DSA:1.20.1260.10 7 131 3.8E-6 T 13-10-2018 IPR012347 Ferritin-like trd_A0519 24fdaaeaaa6213335aa6d5f4681ab608 377 Pfam PF02915 Rubrerythrin 15 65 6.7E-6 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 trd_A0519 24fdaaeaaa6213335aa6d5f4681ab608 377 Pfam PF01988 VIT family 158 369 1.3E-61 T 13-10-2018 IPR008217 Ccc1 family trd_A0610 9749aa719d7e5fa7df40c33777ae81d8 372 SUPERFAMILY SSF53474 90 370 1.45E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0610 9749aa719d7e5fa7df40c33777ae81d8 372 Pfam PF00326 Prolyl oligopeptidase family 174 369 2.3E-13 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 trd_A0610 9749aa719d7e5fa7df40c33777ae81d8 372 Gene3D G3DSA:3.40.50.1820 84 370 6.0E-61 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0976 bcb3bcc3b9e08fe09c29e120c7ed3046 95 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.795 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0976 bcb3bcc3b9e08fe09c29e120c7ed3046 95 SUPERFAMILY SSF46561 1 62 2.22E-18 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0976 bcb3bcc3b9e08fe09c29e120c7ed3046 95 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 5.4E-18 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0976 bcb3bcc3b9e08fe09c29e120c7ed3046 95 Pfam PF00831 Ribosomal L29 protein 4 60 7.1E-20 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0976 bcb3bcc3b9e08fe09c29e120c7ed3046 95 Gene3D G3DSA:1.10.287.310 1 64 3.9E-23 T 13-10-2018 trd_A0029 f26713869e99658ef391d6cc0e91985e 334 SUPERFAMILY SSF103039 29 216 8.89E-20 T 13-10-2018 IPR028976 CheC-like superfamily trd_A0029 f26713869e99658ef391d6cc0e91985e 334 SUPERFAMILY SSF101801 236 311 9.81E-16 T 13-10-2018 IPR036429 SpoA-like superfamily trd_A0029 f26713869e99658ef391d6cc0e91985e 334 Gene3D G3DSA:2.30.330.10 227 312 3.3E-11 T 13-10-2018 IPR036429 SpoA-like superfamily trd_A0029 f26713869e99658ef391d6cc0e91985e 334 Gene3D G3DSA:3.40.1550.10 29 217 1.4E-44 T 13-10-2018 IPR028976 CheC-like superfamily trd_A0029 f26713869e99658ef391d6cc0e91985e 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 239 307 1.1E-19 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) trd_A0029 f26713869e99658ef391d6cc0e91985e 334 Pfam PF02154 Flagellar motor switch protein FliM 23 215 5.4E-37 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 trd_A0029 f26713869e99658ef391d6cc0e91985e 334 PIRSF PIRSF002888 3 318 1.1E-72 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 trd_A0029 f26713869e99658ef391d6cc0e91985e 334 PRINTS PR00956 Flagellar motor switch protein FliN signature 239 255 3.9E-7 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_A0029 f26713869e99658ef391d6cc0e91985e 334 PRINTS PR00956 Flagellar motor switch protein FliN signature 272 285 3.9E-7 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_A0029 f26713869e99658ef391d6cc0e91985e 334 PRINTS PR00956 Flagellar motor switch protein FliN signature 256 272 3.9E-7 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_A0834 38f6d86af5d82508948759998521b10e 464 SMART SM00849 12 182 8.4E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_A0834 38f6d86af5d82508948759998521b10e 464 Pfam PF00581 Rhodanese-like domain 362 451 1.8E-18 T 13-10-2018 IPR001763 Rhodanese-like domain trd_A0834 38f6d86af5d82508948759998521b10e 464 Pfam PF00581 Rhodanese-like domain 256 348 1.5E-10 T 13-10-2018 IPR001763 Rhodanese-like domain trd_A0834 38f6d86af5d82508948759998521b10e 464 Gene3D G3DSA:3.60.15.10 1 245 1.8E-64 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_A0834 38f6d86af5d82508948759998521b10e 464 SUPERFAMILY SSF56281 5 226 2.66E-49 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_A0834 38f6d86af5d82508948759998521b10e 464 SUPERFAMILY SSF52821 246 355 1.57E-23 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_A0834 38f6d86af5d82508948759998521b10e 464 Gene3D G3DSA:3.40.250.10 248 347 7.4E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_A0834 38f6d86af5d82508948759998521b10e 464 Pfam PF00753 Metallo-beta-lactamase superfamily 11 182 4.7E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_A0834 38f6d86af5d82508948759998521b10e 464 SMART SM00450 360 455 1.0E-28 T 13-10-2018 IPR001763 Rhodanese-like domain trd_A0834 38f6d86af5d82508948759998521b10e 464 SMART SM00450 254 352 3.2E-13 T 13-10-2018 IPR001763 Rhodanese-like domain trd_A0834 38f6d86af5d82508948759998521b10e 464 SUPERFAMILY SSF52821 354 459 1.06E-35 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_A0834 38f6d86af5d82508948759998521b10e 464 ProSitePatterns PS00380 Rhodanese signature 1. 278 289 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 trd_A0834 38f6d86af5d82508948759998521b10e 464 Gene3D G3DSA:3.40.250.10 360 462 1.9E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 133 411 3.0E-89 T 13-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 SUPERFAMILY SSF51649 129 413 1.23E-94 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 13 123 4.7E-9 T 13-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 175 183 - T 13-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 Gene3D G3DSA:3.30.70.150 2 127 1.2E-38 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 SUPERFAMILY SSF54966 3 127 3.14E-36 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_0132 76d44e77bae8d748bf28c26b3338fe57 418 Gene3D G3DSA:3.20.20.110 128 415 6.4E-103 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 trd_1056 fb49bc095435f891be4fa831d9be1537 375 SMART SM01002 154 302 6.1E-85 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain trd_1056 fb49bc095435f891be4fa831d9be1537 375 SUPERFAMILY SSF51735 142 308 1.73E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1056 fb49bc095435f891be4fa831d9be1537 375 SMART SM01003 9 142 1.4E-74 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal trd_1056 fb49bc095435f891be4fa831d9be1537 375 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 146 357 1.3E-82 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain trd_1056 fb49bc095435f891be4fa831d9be1537 375 SUPERFAMILY SSF52283 7 365 9.35E-65 T 13-10-2018 trd_1056 fb49bc095435f891be4fa831d9be1537 375 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 7 373 3.6E-165 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 trd_1056 fb49bc095435f891be4fa831d9be1537 375 PIRSF PIRSF000183 6 375 1.3E-167 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 trd_1056 fb49bc095435f891be4fa831d9be1537 375 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 9 142 5.4E-46 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal trd_1056 fb49bc095435f891be4fa831d9be1537 375 Gene3D G3DSA:3.40.50.720 135 310 1.4E-142 T 13-10-2018 trd_1056 fb49bc095435f891be4fa831d9be1537 375 Gene3D G3DSA:3.40.50.720 8 357 1.4E-142 T 13-10-2018 trd_1056 fb49bc095435f891be4fa831d9be1537 375 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 178 203 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 trd_1619 0faf1285a4b2d5f60c4b7d7f8e553452 168 SUPERFAMILY SSF48013 33 163 3.79E-41 T 13-10-2018 IPR035926 NusB-like superfamily trd_1619 0faf1285a4b2d5f60c4b7d7f8e553452 168 Pfam PF01029 NusB family 35 160 4.7E-39 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 trd_1619 0faf1285a4b2d5f60c4b7d7f8e553452 168 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 34 162 3.0E-43 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 trd_1619 0faf1285a4b2d5f60c4b7d7f8e553452 168 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 32 164 22.122 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 trd_1619 0faf1285a4b2d5f60c4b7d7f8e553452 168 Gene3D G3DSA:1.10.940.10 29 166 2.2E-44 T 13-10-2018 IPR035926 NusB-like superfamily trd_0124 171eb9bf32029909b4c6a2f9cdafb9c0 165 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 19 154 2.1E-15 T 13-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G trd_0124 171eb9bf32029909b4c6a2f9cdafb9c0 165 Gene3D G3DSA:3.30.530.20 13 164 2.5E-30 T 13-10-2018 IPR023393 START-like domain superfamily trd_0124 171eb9bf32029909b4c6a2f9cdafb9c0 165 SUPERFAMILY SSF55961 16 155 1.28E-27 T 13-10-2018 trd_1003 9e57d83ac93188b3c0bd92a64576ed8f 289 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 242 268 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 trd_1003 9e57d83ac93188b3c0bd92a64576ed8f 289 Pfam PF01148 Cytidylyltransferase family 3 280 1.4E-49 T 13-10-2018 trd_A0028 f791e965752e95837d98d781c9908c39 128 SUPERFAMILY SSF101801 44 122 9.55E-25 T 13-10-2018 IPR036429 SpoA-like superfamily trd_A0028 f791e965752e95837d98d781c9908c39 128 Gene3D G3DSA:2.30.330.10 35 124 3.1E-33 T 13-10-2018 IPR036429 SpoA-like superfamily trd_A0028 f791e965752e95837d98d781c9908c39 128 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 47 116 2.2E-26 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) trd_A0028 f791e965752e95837d98d781c9908c39 128 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 44 118 2.2E-30 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 trd_A0028 f791e965752e95837d98d781c9908c39 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 79 92 1.1E-23 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_A0028 f791e965752e95837d98d781c9908c39 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 63 79 1.1E-23 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_A0028 f791e965752e95837d98d781c9908c39 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 92 107 1.1E-23 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_A0028 f791e965752e95837d98d781c9908c39 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 46 62 1.1E-23 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 trd_0193 0b98260c7bd50e5162f9181269d9d8a6 501 SUPERFAMILY SSF48239 28 304 3.53E-26 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid trd_0193 0b98260c7bd50e5162f9181269d9d8a6 501 SUPERFAMILY SSF48239 31 161 3.81E-9 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid trd_0193 0b98260c7bd50e5162f9181269d9d8a6 501 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 164 181 3.6 T 13-10-2018 IPR001330 PFTB repeat GO:0003824 trd_0193 0b98260c7bd50e5162f9181269d9d8a6 501 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 35 71 0.0084 T 13-10-2018 IPR001330 PFTB repeat GO:0003824 trd_0193 0b98260c7bd50e5162f9181269d9d8a6 501 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 213 232 8.5 T 13-10-2018 IPR001330 PFTB repeat GO:0003824 trd_0193 0b98260c7bd50e5162f9181269d9d8a6 501 Gene3D G3DSA:1.50.10.20 86 308 2.2E-32 T 13-10-2018 trd_A0115 34feb87fe1dcaaa2314fd302716e71c3 604 TIGRFAM TIGR02577 cas_TM1794_Cmr2: CRISPR-associated protein Cas10/Cmr2, subtype III-B 153 456 1.7E-30 T 13-10-2018 IPR013407 CRISPR-associated protein Cmr2 trd_A0115 34feb87fe1dcaaa2314fd302716e71c3 604 Gene3D G3DSA:3.30.70.2230 334 479 4.8E-31 T 13-10-2018 trd_A0115 34feb87fe1dcaaa2314fd302716e71c3 604 Pfam PF12469 CRISPR-associated protein 6 94 4.1E-12 T 13-10-2018 IPR024615 CRISPR-associated protein Cmr2, N-terminal trd_A0115 34feb87fe1dcaaa2314fd302716e71c3 604 Gene3D G3DSA:3.30.70.2220 2 59 4.4E-11 T 13-10-2018 IPR038242 Cmr2, N-terminal domain superfamily trd_1059 b196a800f83a70da492d9cdced5814c0 321 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 48 72 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_1059 b196a800f83a70da492d9cdced5814c0 321 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 257 270 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_1059 b196a800f83a70da492d9cdced5814c0 321 Pfam PF00294 pfkB family carbohydrate kinase 12 305 3.1E-47 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_1059 b196a800f83a70da492d9cdced5814c0 321 SUPERFAMILY SSF53613 13 313 2.65E-59 T 13-10-2018 IPR029056 Ribokinase-like trd_1059 b196a800f83a70da492d9cdced5814c0 321 Gene3D G3DSA:3.40.1190.20 11 319 4.1E-68 T 13-10-2018 IPR029056 Ribokinase-like trd_1059 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 185 200 3.2E-13 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_1059 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 43 62 3.2E-13 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_1059 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 228 239 3.2E-13 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_1059 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 115 128 3.2E-13 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_1059 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 16 37 3.2E-13 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 268 104.145 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 Gene3D G3DSA:1.10.1270.20 174 242 1.1E-27 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 226 6.4E-84 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 PIRSF PIRSF000386 1 242 2.4E-93 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 SUPERFAMILY SSF75217 1 239 5.36E-94 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 Gene3D G3DSA:3.40.1280.10 1 173 1.3E-70 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal trd_0226 ab61cb8eba6db6871008b1eaab1b87b0 268 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 3.2E-61 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 trd_1436 a7ed488b9a038234fe8ed33e7e7bfb69 404 SMART SM00729 21 241 3.9E-55 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_1436 a7ed488b9a038234fe8ed33e7e7bfb69 404 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 24 372 6.6E-91 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 trd_1436 a7ed488b9a038234fe8ed33e7e7bfb69 404 Pfam PF06969 HemN C-terminal domain 322 387 2.9E-16 T 13-10-2018 IPR010723 HemN, C-terminal trd_1436 a7ed488b9a038234fe8ed33e7e7bfb69 404 Pfam PF04055 Radical SAM superfamily 26 194 7.9E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_1436 a7ed488b9a038234fe8ed33e7e7bfb69 404 Gene3D G3DSA:3.80.30.20 2 320 5.5E-104 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe trd_1436 a7ed488b9a038234fe8ed33e7e7bfb69 404 SUPERFAMILY SSF102114 11 397 1.44E-119 T 13-10-2018 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 SUPERFAMILY SSF50156 285 379 3.42E-26 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 Pfam PF13180 PDZ domain 286 377 1.7E-22 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 PRINTS PR00834 HtrA/DegQ protease family signature 326 338 2.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 PRINTS PR00834 HtrA/DegQ protease family signature 183 207 2.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 2.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 PRINTS PR00834 HtrA/DegQ protease family signature 245 262 2.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 PRINTS PR00834 HtrA/DegQ protease family signature 122 134 2.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 PRINTS PR00834 HtrA/DegQ protease family signature 143 163 2.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 Pfam PF13365 Trypsin-like peptidase domain 113 252 2.2E-34 T 13-10-2018 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 Gene3D G3DSA:2.30.42.10 284 382 1.8E-33 T 13-10-2018 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 Gene3D G3DSA:2.40.10.120 77 281 3.4E-73 T 13-10-2018 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 SMART SM00228 286 368 1.5E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0320 9fe7e097f94c9c26b13e6ae208ec3ec8 384 SUPERFAMILY SSF50494 79 279 3.64E-61 T 13-10-2018 IPR009003 Peptidase S1, PA clan trd_0245 f61b7ab7e2c7bcb89da7d114ab8315aa 284 SUPERFAMILY SSF51556 7 284 7.26E-69 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0245 f61b7ab7e2c7bcb89da7d114ab8315aa 284 Gene3D G3DSA:3.20.20.140 6 284 7.7E-87 T 13-10-2018 trd_0245 f61b7ab7e2c7bcb89da7d114ab8315aa 284 Pfam PF04909 Amidohydrolase 10 284 2.7E-40 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_1442 94da240fc652f20011fb887d24e0e2d6 292 Gene3D G3DSA:3.20.20.30 12 284 1.3E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1442 94da240fc652f20011fb887d24e0e2d6 292 SUPERFAMILY SSF51679 14 284 2.62E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1442 94da240fc652f20011fb887d24e0e2d6 292 Pfam PF00296 Luciferase-like monooxygenase 16 232 1.3E-56 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_A0814 e4c8c5489866b013d1158544c9e5d940 335 Gene3D G3DSA:2.60.40.10 242 334 1.2E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_A0814 e4c8c5489866b013d1158544c9e5d940 335 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 33 227 1.3E-25 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain trd_A0814 e4c8c5489866b013d1158544c9e5d940 335 Gene3D G3DSA:3.40.50.1110 31 238 1.3E-24 T 13-10-2018 IPR036514 SGNH hydrolase superfamily trd_A0814 e4c8c5489866b013d1158544c9e5d940 335 SUPERFAMILY SSF52266 32 236 2.6E-24 T 13-10-2018 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 SUPERFAMILY SSF52518 18 201 1.31E-51 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 SUPERFAMILY SSF52467 172 364 2.93E-37 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 206 341 1.8E-27 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Gene3D G3DSA:3.40.50.1220 202 371 2.8E-39 T 13-10-2018 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Gene3D G3DSA:3.40.50.970 11 192 3.5E-62 T 13-10-2018 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 SUPERFAMILY SSF52518 380 548 6.25E-47 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 406 545 5.3E-32 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 436 455 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Gene3D G3DSA:3.40.50.970 372 551 8.8E-47 T 13-10-2018 trd_0821 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 19 187 4.8E-55 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 SMART SM00388 197 264 5.5E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 Gene3D G3DSA:3.30.565.10 267 420 4.9E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 81 195 1.4E-9 T 13-10-2018 IPR000014 PAS domain trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 SMART SM00387 310 420 1.1E-44 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 SMART SM00091 84 151 1.3E-8 T 13-10-2018 IPR000014 PAS domain trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 SUPERFAMILY SSF55874 253 418 4.19E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 SUPERFAMILY SSF47384 180 265 6.28E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 398 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 417 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 361 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 375 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 Pfam PF08448 PAS fold 90 193 2.6E-11 T 13-10-2018 IPR013656 PAS fold-4 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 264 2.6E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 311 419 1.7E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 Gene3D G3DSA:3.30.450.20 71 188 1.2E-14 T 13-10-2018 trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 SUPERFAMILY SSF55785 76 189 1.2E-13 T 13-10-2018 IPR035965 PAS domain superfamily trd_1599 5ba7843b6c587c7c1387e17cf0928da2 421 Gene3D G3DSA:1.10.287.130 189 266 7.6E-24 T 13-10-2018 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 Gene3D G3DSA:1.10.10.10 2 145 4.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 SMART SM00347 28 128 9.2E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 2.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 2.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 2.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 2.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 SUPERFAMILY SSF46785 6 141 4.92E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 Pfam PF12802 MarR family 34 92 2.1E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1169 57aafb4d5940f1029fa6c226b22626a1 154 SMART SM00418 34 113 0.0063 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 SMART SM00388 243 310 3.8E-22 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 Gene3D G3DSA:1.20.1480.50 144 238 2.7E-9 T 13-10-2018 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 Pfam PF00672 HAMP domain 184 232 3.0E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 459 4.2E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 4.2E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 4.2E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 4.2E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 310 4.9E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 SUPERFAMILY SSF47384 227 310 1.55E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 SUPERFAMILY SSF55874 300 462 1.14E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0607 316d50490a0d487b970d8511664ef1c5 479 SMART SM00387 352 462 1.6E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_A0607 316d50490a0d487b970d8511664ef1c5 479 Gene3D G3DSA:1.10.287.130 239 309 2.2E-20 T 13-10-2018 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 461 5.9E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_A0607 316d50490a0d487b970d8511664ef1c5 479 SUPERFAMILY SSF158472 184 232 4.18E-7 T 13-10-2018 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 SMART SM00304 181 235 4.7E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_A0607 316d50490a0d487b970d8511664ef1c5 479 Gene3D G3DSA:3.30.565.10 313 460 1.0E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1551 9cdce6c307927f27c5de911288787ab9 257 SUPERFAMILY SSF46894 178 247 9.86E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1551 9cdce6c307927f27c5de911288787ab9 257 SMART SM00421 183 241 8.3E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1551 9cdce6c307927f27c5de911288787ab9 257 SMART SM00448 39 151 1.6E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1551 9cdce6c307927f27c5de911288787ab9 257 Gene3D G3DSA:3.40.50.12740 39 247 1.1E-68 T 13-10-2018 trd_1551 9cdce6c307927f27c5de911288787ab9 257 Pfam PF00196 Bacterial regulatory proteins, luxR family 185 241 1.4E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1551 9cdce6c307927f27c5de911288787ab9 257 SUPERFAMILY SSF52172 38 165 4.84E-36 T 13-10-2018 IPR011006 CheY-like superfamily trd_1551 9cdce6c307927f27c5de911288787ab9 257 Pfam PF00072 Response regulator receiver domain 42 151 6.5E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1551 9cdce6c307927f27c5de911288787ab9 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 200 3.4E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1551 9cdce6c307927f27c5de911288787ab9 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 229 3.4E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 Pfam PF01551 Peptidase family M23 83 178 2.1E-36 T 13-10-2018 IPR016047 Peptidase M23 trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 Pfam PF01464 Transglycosylase SLT domain 205 301 8.9E-28 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 Gene3D G3DSA:1.10.530.10 185 325 7.3E-44 T 13-10-2018 trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 SUPERFAMILY SSF53955 198 322 3.13E-47 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 222 250 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 Gene3D G3DSA:2.70.70.10 46 184 2.4E-52 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_A0646 1f9b419d4c8ed3345cc430d891e139e9 327 SUPERFAMILY SSF51261 48 182 7.33E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 Gene3D G3DSA:3.90.20.20 33 142 1.6E-21 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 SUPERFAMILY SSF51064 145 198 2.35E-11 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 Hamap MF_01151 Protein GrpE [grpE]. 2 198 17.024 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 177 196 4.6E-20 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 70 86 4.6E-20 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 152 167 4.6E-20 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 98 113 4.6E-20 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 Gene3D G3DSA:2.30.22.10 144 204 1.0E-16 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 ProSitePatterns PS01071 grpE protein signature. 155 196 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 Pfam PF01025 GrpE 45 196 3.3E-38 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 trd_1639 a8aa98f89aba58d73d43eeefa7426bcf 218 SUPERFAMILY SSF58014 47 144 9.81E-20 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 trd_1977 0a411f43f420f0dd20e562b861dbd92c 402 Pfam PF00999 Sodium/hydrogen exchanger family 9 361 7.3E-39 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 trd_1977 0a411f43f420f0dd20e562b861dbd92c 402 Gene3D G3DSA:1.20.1530.20 3 373 1.1E-51 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 Gene3D G3DSA:3.20.20.140 64 329 1.0E-121 T 13-10-2018 trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 SUPERFAMILY SSF51556 64 329 4.75E-65 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 PIRSF PIRSF039004 4 395 4.1E-135 T 13-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 Pfam PF01979 Amidohydrolase family 265 344 6.3E-7 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 Pfam PF07969 Amidohydrolase family 52 85 3.5E-7 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 Gene3D G3DSA:2.30.40.10 13 374 1.0E-121 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_A0407 2779e943f94de43c33eb66a2fc17f14e 413 SUPERFAMILY SSF51338 6 378 1.57E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_A0343 88558c23def47277ea271ea80fb5b32e 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 72 1.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0343 88558c23def47277ea271ea80fb5b32e 247 Gene3D G3DSA:1.20.120.530 80 220 1.9E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0343 88558c23def47277ea271ea80fb5b32e 247 SMART SM00345 18 76 1.1E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0343 88558c23def47277ea271ea80fb5b32e 247 Pfam PF07729 FCD domain 87 209 6.8E-23 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0343 88558c23def47277ea271ea80fb5b32e 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0343 88558c23def47277ea271ea80fb5b32e 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0343 88558c23def47277ea271ea80fb5b32e 247 Gene3D G3DSA:1.10.10.10 14 78 4.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0343 88558c23def47277ea271ea80fb5b32e 247 SMART SM00895 86 210 2.0E-16 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0343 88558c23def47277ea271ea80fb5b32e 247 SUPERFAMILY SSF48008 84 218 5.75E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0343 88558c23def47277ea271ea80fb5b32e 247 SUPERFAMILY SSF46785 17 101 2.52E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 239 247 1.7E-9 T 13-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 59 76 1.7E-9 T 13-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 297 314 1.7E-9 T 13-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 254 261 1.7E-9 T 13-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF14716 Helix-hairpin-helix domain 4 72 2.2E-22 T 13-10-2018 IPR010996 DNA polymerase beta-like, N-terminal domain trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 PIRSF PIRSF005047 2 573 6.1E-230 T 13-10-2018 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:1.10.150.20 87 153 7.5E-20 T 13-10-2018 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:3.30.460.10 156 260 1.0E-27 T 13-10-2018 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:3.20.20.140 329 580 6.2E-78 T 13-10-2018 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF47781 92 146 4.5E-8 T 13-10-2018 IPR010994 RuvA domain 2-like trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF47802 4 85 3.92E-19 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF14791 DNA polymerase beta thumb 254 315 2.7E-23 T 13-10-2018 IPR029398 DNA polymerase beta, thumb domain trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00483 2 315 2.4E-35 T 13-10-2018 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:1.10.150.110 1 86 5.1E-27 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00481 339 418 8.9E-17 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF89550 337 570 6.41E-55 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:3.30.210.10 261 325 1.9E-25 T 13-10-2018 IPR037160 DNA polymerase, thumb domain superfamily trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF14520 Helix-hairpin-helix domain 93 147 8.4E-14 T 13-10-2018 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF02811 PHP domain 340 428 7.9E-6 T 13-10-2018 IPR004013 PHP domain GO:0003824 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00278 127 146 4.6 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00278 92 111 27.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00278 52 71 0.48 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0567 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF81301 159 315 1.51E-42 T 13-10-2018 trd_1893 0256afe26dcf8a376245bf5aa182a981 385 SUPERFAMILY SSF51679 32 376 3.93E-58 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1893 0256afe26dcf8a376245bf5aa182a981 385 Pfam PF00296 Luciferase-like monooxygenase 24 355 1.6E-53 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_1893 0256afe26dcf8a376245bf5aa182a981 385 Gene3D G3DSA:3.20.20.30 35 378 2.0E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 Pfam PF01565 FAD binding domain 44 182 4.8E-44 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 SUPERFAMILY SSF56176 6 219 2.76E-71 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 Gene3D G3DSA:3.30.70.2740 338 419 8.1E-9 T 13-10-2018 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 Gene3D G3DSA:1.10.45.10 420 460 2.2E-7 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 SUPERFAMILY SSF55103 222 469 6.7E-69 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 Pfam PF02913 FAD linked oxidases, C-terminal domain 219 459 1.2E-64 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 trd_0260 76191d2b64a7fbc437f04ad70432dfb2 486 Gene3D G3DSA:3.30.465.40 5 238 9.2E-74 T 13-10-2018 trd_0717 4e5e70f4f167195e4f71aa747b9d5486 395 Gene3D G3DSA:3.90.1150.10 14 379 1.8E-108 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0717 4e5e70f4f167195e4f71aa747b9d5486 395 SUPERFAMILY SSF53383 3 386 3.23E-87 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0717 4e5e70f4f167195e4f71aa747b9d5486 395 Gene3D G3DSA:3.40.640.10 29 292 1.8E-108 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0717 4e5e70f4f167195e4f71aa747b9d5486 395 Pfam PF00266 Aminotransferase class-V 35 377 5.5E-63 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_0468 cffc60f27ca95b16956587e2e061404a 241 SUPERFAMILY SSF54862 1 227 2.72E-56 T 13-10-2018 trd_0468 cffc60f27ca95b16956587e2e061404a 241 Pfam PF12838 4Fe-4S dicluster domain 99 185 9.3E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0468 cffc60f27ca95b16956587e2e061404a 241 Pfam PF12838 4Fe-4S dicluster domain 12 82 7.5E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0468 cffc60f27ca95b16956587e2e061404a 241 Gene3D G3DSA:3.30.70.20 96 234 8.9E-33 T 13-10-2018 trd_0468 cffc60f27ca95b16956587e2e061404a 241 Gene3D G3DSA:3.30.70.20 1 95 4.9E-22 T 13-10-2018 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 35 142 5.1E-6 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 154 279 4.7E-10 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 457 574 9.4E-15 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55073 584 736 1.41E-23 T 13-10-2018 IPR029787 Nucleotide cyclase trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00052 745 991 4.8E-109 T 13-10-2018 IPR001633 EAL domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.20 470 579 4.4E-17 T 13-10-2018 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.20 152 265 3.6E-20 T 13-10-2018 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF141868 750 998 1.09E-84 T 13-10-2018 IPR035919 EAL domain superfamily trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55785 36 140 1.05E-10 T 13-10-2018 IPR035965 PAS domain superfamily trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00267 568 735 1.9E-24 T 13-10-2018 IPR000160 GGDEF domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.20 31 137 5.3E-9 T 13-10-2018 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00086 230 272 0.0011 T 13-10-2018 IPR001610 PAC motif trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00086 529 568 250.0 T 13-10-2018 IPR001610 PAC motif trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55781 305 454 5.89E-15 T 13-10-2018 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.70.270 580 748 8.2E-29 T 13-10-2018 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.40 266 469 4.1E-18 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF08447 PAS fold 177 261 2.2E-12 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00065 303 455 8.5E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF00563 EAL domain 751 986 6.3E-74 T 13-10-2018 IPR001633 EAL domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55785 470 577 8.03E-16 T 13-10-2018 IPR035965 PAS domain superfamily trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF13188 PAS domain 38 67 0.0081 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF01590 GAF domain 305 443 1.2E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 576 735 1.4E-14 T 13-10-2018 IPR000160 GGDEF domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF00990 Diguanylate cyclase, GGDEF domain 579 731 9.4E-21 T 13-10-2018 IPR000160 GGDEF domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55785 158 274 5.48E-17 T 13-10-2018 IPR035965 PAS domain superfamily trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF08448 PAS fold 468 570 1.6E-9 T 13-10-2018 IPR013656 PAS fold-4 trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00091 30 96 0.81 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00091 153 224 3.1 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00091 459 527 3.4E-8 T 13-10-2018 IPR000014 PAS domain trd_1559 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.20.20.450 749 1004 2.8E-96 T 13-10-2018 IPR035919 EAL domain superfamily trd_0257 9fec06f527c5afed5c196f1f350f1ec1 191 SUPERFAMILY SSF53822 2 191 1.2E-39 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_0257 9fec06f527c5afed5c196f1f350f1ec1 191 Gene3D G3DSA:3.40.50.2300 101 191 1.3E-50 T 13-10-2018 trd_0257 9fec06f527c5afed5c196f1f350f1ec1 191 Gene3D G3DSA:3.40.50.2300 2 100 1.3E-50 T 13-10-2018 trd_0257 9fec06f527c5afed5c196f1f350f1ec1 191 Pfam PF13458 Periplasmic binding protein 2 191 2.2E-35 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_0945 dbfee1e75464d951284236730af3ad9b 454 PIRSF PIRSF000484 5 450 3.4E-131 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 trd_0945 dbfee1e75464d951284236730af3ad9b 454 Gene3D G3DSA:3.20.140.10 10 377 1.7E-131 T 13-10-2018 trd_0945 dbfee1e75464d951284236730af3ad9b 454 Gene3D G3DSA:3.20.140.10 382 452 4.8E-6 T 13-10-2018 trd_0945 dbfee1e75464d951284236730af3ad9b 454 Gene3D G3DSA:3.20.20.70 150 318 1.7E-131 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0945 dbfee1e75464d951284236730af3ad9b 454 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 154 301 3.1E-8 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 trd_0945 dbfee1e75464d951284236730af3ad9b 454 SUPERFAMILY SSF51690 138 447 1.27E-103 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 trd_0945 dbfee1e75464d951284236730af3ad9b 454 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 9 437 1.1E-155 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 trd_0945 dbfee1e75464d951284236730af3ad9b 454 SUPERFAMILY SSF54675 8 137 1.91E-37 T 13-10-2018 trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 Gene3D G3DSA:1.10.10.2830 104 218 2.7E-38 T 13-10-2018 trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 SUPERFAMILY SSF110849 25 119 2.49E-28 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 SUPERFAMILY SSF109709 110 218 2.41E-33 T 13-10-2018 trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 Pfam PF02195 ParB-like nuclease domain 27 116 6.8E-23 T 13-10-2018 IPR003115 ParB/Sulfiredoxin trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 Gene3D G3DSA:3.90.1530.30 39 103 2.2E-27 T 13-10-2018 trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 SMART SM00470 26 117 3.1E-33 T 13-10-2018 IPR003115 ParB/Sulfiredoxin trd_1054 e264cdb0a238dbe59b0e8d47414d68ce 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 25 198 8.1E-56 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 trd_1659 9acc31e94098fd858528b71b2f6fc926 273 Gene3D G3DSA:3.20.20.190 3 247 1.9E-43 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 trd_1659 9acc31e94098fd858528b71b2f6fc926 273 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 14 242 5.2E-21 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 trd_1659 9acc31e94098fd858528b71b2f6fc926 273 SUPERFAMILY SSF51695 9 248 1.62E-45 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:3.30.1360.120 6 240 3.4E-94 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 SUPERFAMILY SSF103025 4 285 1.21E-106 T 13-10-2018 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 SUPERFAMILY SSF101790 277 368 1.96E-22 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:4.10.1250.10 242 282 1.9E-19 T 13-10-2018 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 4 367 3.1E-127 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 PIRSF PIRSF006487 1 375 6.0E-99 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 270 360 5.2E-27 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:2.40.30.110 284 367 4.2E-27 T 13-10-2018 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Hamap MF_00259 Aminomethyltransferase [gcvT]. 2 367 47.844 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:3.30.70.1400 52 142 3.4E-94 T 13-10-2018 trd_0751 357e0f6978583acdf910c0627fd6b9ff 375 Pfam PF01571 Aminomethyltransferase folate-binding domain 8 263 1.1E-98 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain trd_1493 7ff2d5b7105aa0323a541615a7868990 330 Pfam PF00676 Dehydrogenase E1 component 13 310 9.8E-98 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 trd_1493 7ff2d5b7105aa0323a541615a7868990 330 Gene3D G3DSA:3.40.50.970 1 329 3.6E-134 T 13-10-2018 trd_1493 7ff2d5b7105aa0323a541615a7868990 330 SUPERFAMILY SSF52518 2 325 5.16E-108 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Pfam PF02602 Uroporphyrinogen-III synthase HemD 324 550 4.3E-63 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.190.10 5 208 8.7E-78 T 13-10-2018 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 293 1.7E-12 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.50.10090 297 433 9.9E-28 T 13-10-2018 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.190.10 102 201 8.7E-78 T 13-10-2018 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 SUPERFAMILY SSF69618 309 555 5.75E-69 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.50.10090 434 557 7.8E-26 T 13-10-2018 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.30.160.40 222 295 1.0E-11 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 296 35.162 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 SUPERFAMILY SSF53850 4 211 4.21E-72 T 13-10-2018 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 123 140 1.9E-34 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 1.9E-34 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 75 94 1.9E-34 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 44 64 1.9E-34 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 142 159 1.9E-34 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 SUPERFAMILY SSF54782 223 293 1.44E-12 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 210 5.3E-72 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_1125 32de5c85b2e06f4c06c8165980221e60 560 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 293 2.7E-92 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 trd_A0131 98bf9e38001568654dcb8ce7a60c2685 199 SUPERFAMILY SSF47240 14 135 3.6E-7 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_A0131 98bf9e38001568654dcb8ce7a60c2685 199 Pfam PF13668 Ferritin-like domain 7 137 1.5E-18 T 13-10-2018 trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 4.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 263 8.2E-54 T 13-10-2018 trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 4.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 247 4.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 4.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0926 4ae230a61ffada02789fa067df808ce1 277 Gene3D G3DSA:3.40.50.720 4 277 2.8E-72 T 13-10-2018 trd_A0926 4ae230a61ffada02789fa067df808ce1 277 SUPERFAMILY SSF51735 6 265 3.46E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0926 4ae230a61ffada02789fa067df808ce1 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_A0936 f30c0fd382970e5b30b6330492265b70 674 SUPERFAMILY SSF52540 175 642 1.19E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0936 f30c0fd382970e5b30b6330492265b70 674 Gene3D G3DSA:3.30.2310.20 1 40 8.7E-9 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily trd_A0936 f30c0fd382970e5b30b6330492265b70 674 Pfam PF13538 UvrD-like helicase C-terminal domain 577 636 7.4E-8 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain trd_A0936 f30c0fd382970e5b30b6330492265b70 674 Pfam PF13245 AAA domain 179 438 3.7E-15 T 13-10-2018 trd_A0936 f30c0fd382970e5b30b6330492265b70 674 Gene3D G3DSA:3.40.50.300 460 659 1.8E-19 T 13-10-2018 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 6.9E-43 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 6.9E-43 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 6.9E-43 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 6.9E-43 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 6.9E-43 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 Pfam PF00334 Nucleoside diphosphate kinase 2 135 1.2E-54 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 SUPERFAMILY SSF54919 1 147 2.75E-56 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 SMART SM00562 1 138 2.6E-76 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 Gene3D G3DSA:3.30.70.141 1 148 1.0E-59 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1770 7cac91f0b6f3a9191dba1de9e01fb7fc 149 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 36.059 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_A0242 9ae311591e0eb2dd7f34a97f7e782e37 358 Gene3D G3DSA:3.60.21.10 73 356 5.6E-32 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_A0242 9ae311591e0eb2dd7f34a97f7e782e37 358 SUPERFAMILY SSF56300 80 352 1.19E-36 T 13-10-2018 trd_A0242 9ae311591e0eb2dd7f34a97f7e782e37 358 Pfam PF00149 Calcineurin-like phosphoesterase 79 276 5.0E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_1617 0aea88e81390768ed35a10c219f587a9 258 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 32 245 3.6E-56 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_1617 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 31 58 2.2E-34 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_1617 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 172 200 2.2E-34 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_1617 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 121 147 2.2E-34 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_1617 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 121 2.2E-34 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_1617 0aea88e81390768ed35a10c219f587a9 258 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 24 256 16.338 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_1617 0aea88e81390768ed35a10c219f587a9 258 Pfam PF00902 Sec-independent protein translocase protein (TatC) 34 240 4.4E-59 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 trd_A0740 c6bf7b9bf924402a4aff83d0cdc6fda8 381 SUPERFAMILY SSF51905 5 359 1.49E-47 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0740 c6bf7b9bf924402a4aff83d0cdc6fda8 381 Gene3D G3DSA:3.30.9.10 60 316 1.6E-123 T 13-10-2018 trd_A0740 c6bf7b9bf924402a4aff83d0cdc6fda8 381 Gene3D G3DSA:3.50.50.60 6 358 1.6E-123 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0740 c6bf7b9bf924402a4aff83d0cdc6fda8 381 SUPERFAMILY SSF54373 215 316 7.06E-17 T 13-10-2018 trd_A0740 c6bf7b9bf924402a4aff83d0cdc6fda8 381 Pfam PF01266 FAD dependent oxidoreductase 6 355 1.3E-56 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 82 385 1.6E-87 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 Pfam PF03572 Peptidase family S41 219 382 6.6E-48 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 SMART SM00228 121 192 1.8E-15 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 Gene3D G3DSA:3.90.226.10 209 380 1.6E-91 T 13-10-2018 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 120 189 2.7E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 SUPERFAMILY SSF50156 113 220 1.26E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 SMART SM00245 194 383 2.4E-60 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 Gene3D G3DSA:2.30.42.10 121 208 1.6E-91 T 13-10-2018 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 Gene3D G3DSA:3.30.750.44 62 358 1.6E-91 T 13-10-2018 trd_0487 bc93e2bb77034c2d0845c2913bb1060f 423 SUPERFAMILY SSF52096 58 387 7.62E-65 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_0651 d4110cf24d7a828aa3b449f581579cc4 214 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 198 31.395 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 trd_0651 d4110cf24d7a828aa3b449f581579cc4 214 SUPERFAMILY SSF52374 3 198 1.31E-48 T 13-10-2018 trd_0651 d4110cf24d7a828aa3b449f581579cc4 214 Gene3D G3DSA:3.40.50.620 2 204 1.3E-59 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0651 d4110cf24d7a828aa3b449f581579cc4 214 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 68 1.1E-9 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_0651 d4110cf24d7a828aa3b449f581579cc4 214 Pfam PF01467 Cytidylyltransferase-like 6 172 8.3E-27 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_0651 d4110cf24d7a828aa3b449f581579cc4 214 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 197 3.5E-51 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 trd_1777 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF55021 647 720 3.75E-19 T 13-10-2018 trd_1777 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.30.70.260 647 722 2.2E-24 T 13-10-2018 trd_1777 710eebcc71cab860388a6950e36520da 745 Pfam PF01842 ACT domain 648 711 1.5E-11 T 13-10-2018 IPR002912 ACT domain trd_1777 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.40.50.720 296 477 1.8E-116 T 13-10-2018 trd_1777 710eebcc71cab860388a6950e36520da 745 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 419 435 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site trd_1777 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.40.50.720 206 503 1.8E-116 T 13-10-2018 trd_1777 710eebcc71cab860388a6950e36520da 745 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 305 479 3.7E-63 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 trd_1777 710eebcc71cab860388a6950e36520da 745 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 203 721 1.4E-157 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 trd_1777 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF51735 296 480 1.21E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1777 710eebcc71cab860388a6950e36520da 745 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 390 412 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site trd_1777 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF143548 520 605 3.66E-8 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 trd_1777 710eebcc71cab860388a6950e36520da 745 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 204 511 6.1E-34 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 trd_1777 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.30.1330.90 517 632 3.1E-8 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 trd_1777 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF56784 7 155 1.91E-10 T 13-10-2018 IPR036412 HAD-like superfamily trd_1777 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF52283 202 333 2.08E-35 T 13-10-2018 trd_1777 710eebcc71cab860388a6950e36520da 745 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 342 369 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 trd_A0690 f655248c39dfe97529c7a3a2d7678304 249 SUPERFAMILY SSF46894 172 243 5.1E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_A0690 f655248c39dfe97529c7a3a2d7678304 249 Gene3D G3DSA:1.10.10.10 137 249 1.7E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0690 f655248c39dfe97529c7a3a2d7678304 249 SMART SM00421 182 240 3.7E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.20.20.80 23 472 2.0E-224 T 13-10-2018 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 581 1116 1.1E-149 T 13-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.90.400.10 121 191 2.0E-224 T 13-10-2018 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 23 558 1.7E-280 T 13-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Pfam PF01636 Phosphotransferase enzyme family 873 1044 5.0E-9 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 SMART SM00642 31 430 1.6E-102 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Pfam PF00128 Alpha amylase, catalytic domain 46 399 1.0E-73 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF51011 478 559 1.05E-16 T 13-10-2018 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Pfam PF16657 Maltogenic Amylase, C-terminal domain 478 555 2.0E-27 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.90.1200.10 862 1122 4.0E-64 T 13-10-2018 trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF56112 754 1120 2.21E-19 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:2.60.40.1180 478 574 7.3E-31 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta trd_1931 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF51445 21 475 8.16E-132 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 Gene3D G3DSA:3.30.70.20 4 178 6.2E-67 T 13-10-2018 trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 Gene3D G3DSA:3.30.70.20 64 116 6.2E-67 T 13-10-2018 trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 Pfam PF12800 4Fe-4S binding domain 12 25 0.22 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 90 101 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 Pfam PF03916 Polysulphide reductase, NrfD 234 505 2.5E-17 T 13-10-2018 IPR005614 NrfD family trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 Pfam PF13247 4Fe-4S dicluster domain 53 145 5.0E-23 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_A0629 e9f869a026232c682e75501eb11e5e3c 510 SUPERFAMILY SSF54862 1 178 1.26E-68 T 13-10-2018 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 SUPERFAMILY SSF48173 184 464 1.16E-106 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 Gene3D G3DSA:1.10.579.10 279 467 8.4E-78 T 13-10-2018 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 135 151 2.0E-26 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 310 326 2.0E-26 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 330 348 2.0E-26 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 369 383 2.0E-26 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 310 322 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 SUPERFAMILY SSF52425 3 181 1.18E-46 T 13-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 330 349 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 Gene3D G3DSA:1.25.40.80 124 275 1.6E-71 T 13-10-2018 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 Pfam PF00875 DNA photolyase 4 156 6.4E-43 T 13-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 Gene3D G3DSA:3.40.50.620 5 192 1.6E-71 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1372 d7cb8a8e33b15c48ba0836fda2e7d573 467 Pfam PF03441 FAD binding domain of DNA photolyase 261 459 1.4E-82 T 13-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 trd_0548 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PIRSF PIRSF006648 2 285 2.0E-62 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0548 15a96c76b2e06e84b7bc6a6e98a33ff4 286 Pfam PF01061 ABC-2 type transporter 24 234 8.7E-40 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 trd_0548 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 41 62 6.1E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0548 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 213 232 6.1E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0548 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 156 180 6.1E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0548 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 6.1E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:3.40.50.620 137 271 2.5E-30 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:3.40.50.620 303 600 2.3E-70 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:1.10.730.10 601 716 2.0E-35 T 13-10-2018 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF47323 597 716 9.16E-32 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 PRINTS PR01038 Arginyl-tRNA synthetase signature 156 172 1.2E-10 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 PRINTS PR01038 Arginyl-tRNA synthetase signature 141 156 1.2E-10 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 PRINTS PR01038 Arginyl-tRNA synthetase signature 180 193 1.2E-10 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Pfam PF00750 tRNA synthetases class I (R) 124 262 4.1E-18 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Pfam PF00750 tRNA synthetases class I (R) 351 583 2.6E-33 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 349 716 4.1E-88 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Pfam PF05746 DALR anticodon binding domain 602 716 1.4E-33 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Hamap MF_00123 Arginine--tRNA ligase [argS]. 7 716 23.474 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF52374 138 595 1.31E-68 T 13-10-2018 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF55190 78 133 9.16E-8 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 SMART SM00836 602 716 6.6E-42 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 trd_0543 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:3.30.1360.70 69 136 1.7E-9 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 Gene3D G3DSA:1.20.120.530 95 231 7.7E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 29 90 6.9E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 SMART SM00895 100 224 1.2E-17 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 SUPERFAMILY SSF48008 95 225 1.02E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 Pfam PF07729 FCD domain 100 224 2.5E-23 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 SUPERFAMILY SSF46785 28 94 1.18E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 Gene3D G3DSA:1.10.10.10 8 91 5.9E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0916 18c92f06c4f24726e5e3ab727f054196 263 SMART SM00345 32 90 4.6E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF52540 116 290 1.14E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:2.40.30.10 290 407 6.1E-42 T 13-10-2018 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:2.40.30.10 521 618 6.7E-29 T 13-10-2018 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Pfam PF11987 Translation-initiation factor 2 411 508 6.6E-35 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF50447 290 374 4.64E-25 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF52156 401 526 9.68E-34 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 121 277 3.6E-34 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF50447 522 617 2.83E-27 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 2 617 16.194 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 39 88 7.3E-13 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 PRINTS PR00449 Transforming protein P21 ras signature 259 281 7.4E-5 T 13-10-2018 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 PRINTS PR00449 Transforming protein P21 ras signature 218 231 7.4E-5 T 13-10-2018 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 PRINTS PR00449 Transforming protein P21 ras signature 160 182 7.4E-5 T 13-10-2018 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:3.40.50.10050 412 520 1.5E-34 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Pfam PF00009 Elongation factor Tu GTP binding domain 123 279 5.3E-37 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 35 617 2.1E-232 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 ProSitePatterns PS01176 Initiation factor 2 signature. 570 592 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 trd_0773 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:3.40.50.300 116 289 9.3E-76 T 13-10-2018 trd_1286 5d84c20c7a0ae59b211a2c332c38f407 309 SUPERFAMILY SSF53335 87 267 2.32E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1286 5d84c20c7a0ae59b211a2c332c38f407 309 Gene3D G3DSA:3.40.50.150 87 252 4.3E-34 T 13-10-2018 trd_1286 5d84c20c7a0ae59b211a2c332c38f407 309 Pfam PF13489 Methyltransferase domain 82 241 2.5E-21 T 13-10-2018 trd_A0032 a3d2a53b8237feec2aea8fd7d6628124 267 Pfam PF01618 MotA/TolQ/ExbB proton channel family 101 217 5.0E-27 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel trd_0324 301e0b38a8264d0f05e9b293dc944414 102 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 11 83 8.0E-25 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal trd_0324 301e0b38a8264d0f05e9b293dc944414 102 Gene3D G3DSA:1.10.3140.10 10 88 1.5E-28 T 13-10-2018 trd_0324 301e0b38a8264d0f05e9b293dc944414 102 SUPERFAMILY SSF56645 9 84 1.04E-22 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_1478 153ed65dbf96523508058044d4eb87e4 222 Pfam PF02254 TrkA-N domain 3 118 2.2E-31 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 trd_1478 153ed65dbf96523508058044d4eb87e4 222 Gene3D G3DSA:3.40.50.720 1 133 5.8E-40 T 13-10-2018 trd_1478 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.1E-13 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1478 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.1E-13 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1478 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.1E-13 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1478 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.1E-13 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1478 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.1E-13 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1478 153ed65dbf96523508058044d4eb87e4 222 SUPERFAMILY SSF116726 140 216 1.18E-15 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 trd_1478 153ed65dbf96523508058044d4eb87e4 222 Gene3D G3DSA:3.30.70.1450 135 217 3.2E-20 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 trd_1478 153ed65dbf96523508058044d4eb87e4 222 Pfam PF02080 TrkA-C domain 149 216 7.1E-16 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 trd_1478 153ed65dbf96523508058044d4eb87e4 222 SUPERFAMILY SSF51735 1 140 4.41E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 Gene3D G3DSA:3.90.180.10 5 318 2.2E-88 T 13-10-2018 trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 133 1.2E-34 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 SUPERFAMILY SSF50129 1 159 8.07E-58 T 13-10-2018 IPR011032 GroES-like superfamily trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 12 326 4.9E-105 T 13-10-2018 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 SUPERFAMILY SSF51735 138 290 2.76E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 Gene3D G3DSA:3.40.50.720 147 276 2.2E-88 T 13-10-2018 trd_0582 9a1d7b2304b5b6db179a73292cb64bb0 328 SMART SM00829 10 325 0.0013 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:3.30.1480.10 1 125 1.1E-43 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 6 339 2.1E-127 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Pfam PF00575 S1 RNA binding domain 133 195 4.5E-8 T 13-10-2018 IPR003029 S1 domain GO:0003676 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SMART SM00316 133 199 2.2E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:3.30.300.20 277 369 1.4E-28 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:2.40.50.140 135 197 6.4E-25 T 13-10-2018 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF69705 1 126 5.89E-39 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Pfam PF08529 NusA N-terminal domain 5 124 7.4E-39 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF54814 199 276 1.31E-29 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Pfam PF13184 NusA-like KH domain 229 295 2.3E-28 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 420 29.897 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SMART SM00322 302 355 2.4 T 13-10-2018 IPR004087 K Homology domain GO:0003676 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SMART SM00322 229 301 0.99 T 13-10-2018 IPR004087 K Homology domain GO:0003676 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF54814 278 339 9.16E-16 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:3.30.300.20 198 276 1.3E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_0775 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF50249 132 198 2.98E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0387 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:3.10.310.70 80 201 7.6E-152 T 13-10-2018 trd_0387 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:2.30.40.10 9 506 7.6E-152 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0387 78facea0aaea1fee4d385b348053bfe3 536 SUPERFAMILY SSF51338 1 531 5.94E-22 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0387 78facea0aaea1fee4d385b348053bfe3 536 SUPERFAMILY SSF51556 61 488 2.25E-43 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0387 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:3.20.20.140 62 488 7.6E-152 T 13-10-2018 trd_0387 78facea0aaea1fee4d385b348053bfe3 536 Pfam PF07969 Amidohydrolase family 50 527 5.4E-119 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 4 344 35.839 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 343 1.9E-26 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 SUPERFAMILY SSF56042 168 343 9.24E-46 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 5 333 1.0E-96 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 Pfam PF00586 AIR synthase related protein, N-terminal domain 56 161 1.8E-16 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 SUPERFAMILY SSF55326 5 163 1.27E-40 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 Gene3D G3DSA:3.30.1330.10 3 167 1.3E-50 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0863 d3c8c2d3138859fe6760d1c715f9b531 359 Gene3D G3DSA:3.90.650.10 168 344 3.5E-55 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 TIGRFAM TIGR00476 selD: selenide, water dikinase 8 290 1.4E-101 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 SUPERFAMILY SSF55326 8 131 5.83E-36 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 SUPERFAMILY SSF56042 133 319 5.53E-48 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 PIRSF PIRSF036407 1 323 1.8E-98 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 Hamap MF_00625 Selenide, water dikinase [selD]. 1 324 34.716 T 13-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 Pfam PF00586 AIR synthase related protein, N-terminal domain 21 127 3.8E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 Gene3D G3DSA:3.90.650.10 135 323 1.1E-50 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 Pfam PF02769 AIR synthase related protein, C-terminal domain 139 319 5.5E-24 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_1305 f73dd2ccb4de8acb15396c3b05977f0f 325 Gene3D G3DSA:3.30.1330.10 1 133 1.7E-40 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0394 abfc9347ec6f6e09516ffb100cd9fc45 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 139 521 7.8E-83 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_0394 abfc9347ec6f6e09516ffb100cd9fc45 610 PIRSF PIRSF002741 35 596 1.9E-104 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_0394 abfc9347ec6f6e09516ffb100cd9fc45 610 Gene3D G3DSA:3.40.190.10 99 587 2.1E-143 T 13-10-2018 trd_0394 abfc9347ec6f6e09516ffb100cd9fc45 610 Gene3D G3DSA:3.10.105.10 360 575 2.1E-143 T 13-10-2018 trd_0394 abfc9347ec6f6e09516ffb100cd9fc45 610 Gene3D G3DSA:3.90.76.10 127 257 2.1E-143 T 13-10-2018 trd_0394 abfc9347ec6f6e09516ffb100cd9fc45 610 SUPERFAMILY SSF53850 91 594 3.26E-129 T 13-10-2018 trd_0924 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 SUPERFAMILY SSF53067 2 309 7.69E-57 T 13-10-2018 trd_0924 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 Gene3D G3DSA:3.30.420.40 3 306 8.0E-84 T 13-10-2018 trd_0924 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 Pfam PF00480 ROK family 11 309 2.4E-52 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 trd_0924 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 Gene3D G3DSA:3.30.420.40 125 293 8.0E-84 T 13-10-2018 trd_0924 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 ProSitePatterns PS01125 ROK family signature. 134 161 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:1.10.1780.10 2 149 2.4E-35 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 146 8.1E-13 T 13-10-2018 IPR004176 Clp, N-terminal trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 2.0E-10 T 13-10-2018 IPR004176 Clp, N-terminal trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 8 843 1.5E-269 T 13-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:3.40.50.300 150 343 5.2E-76 T 13-10-2018 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 635 653 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 SMART SM00382 601 751 5.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 SMART SM00382 199 344 1.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF07724 AAA domain (Cdc48 subfamily) 600 763 3.5E-57 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:1.10.8.60 769 868 1.1E-33 T 13-10-2018 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 SUPERFAMILY SSF52540 550 855 1.06E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 SMART SM01086 769 859 8.8E-42 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 SUPERFAMILY SSF81923 5 157 1.07E-37 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:3.40.50.300 554 767 7.9E-93 T 13-10-2018 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 3.0E-30 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 335 1.1E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 SUPERFAMILY SSF52540 158 549 3.14E-98 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 679 697 2.9E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 726 2.9E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 623 2.9E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 668 2.9E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_0443 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:3.40.50.300 344 548 7.0E-71 T 13-10-2018 trd_1825 14506be166d347fb9c03e7ce73e75b6a 501 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 trd_1825 14506be166d347fb9c03e7ce73e75b6a 501 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 trd_1825 14506be166d347fb9c03e7ce73e75b6a 501 Gene3D G3DSA:3.40.605.10 14 480 4.5E-196 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 trd_1825 14506be166d347fb9c03e7ce73e75b6a 501 SUPERFAMILY SSF53720 7 486 3.93E-183 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 trd_1825 14506be166d347fb9c03e7ce73e75b6a 501 Gene3D G3DSA:3.40.309.10 259 452 4.5E-196 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 trd_1825 14506be166d347fb9c03e7ce73e75b6a 501 Pfam PF00171 Aldehyde dehydrogenase family 19 482 1.2E-186 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03143 Elongation factor Tu C-terminal domain 303 398 5.3E-35 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 400 1.4E-215 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF52540 9 231 6.59E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 343 399 2.8E-26 T 13-10-2018 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 400 59.863 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03144 Elongation factor Tu domain 2 230 298 1.1E-18 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50447 210 306 6.87E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50465 303 399 7.2E-36 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 211 339 4.0E-54 T 13-10-2018 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 5.1E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.6E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0676 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:3.40.50.300 2 208 1.4E-67 T 13-10-2018 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03143 Elongation factor Tu C-terminal domain 303 398 5.3E-35 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 400 1.4E-215 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF52540 9 231 6.59E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 343 399 2.8E-26 T 13-10-2018 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 400 59.863 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03144 Elongation factor Tu domain 2 230 298 1.1E-18 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50447 210 306 6.87E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50465 303 399 7.2E-36 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 211 339 4.0E-54 T 13-10-2018 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 5.1E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.6E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0986 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:3.40.50.300 2 208 1.4E-67 T 13-10-2018 trd_1137 586edf733cc591de859674aa7be0db82 314 SUPERFAMILY SSF161098 74 303 2.75E-53 T 13-10-2018 IPR035906 MetI-like superfamily trd_1137 586edf733cc591de859674aa7be0db82 314 Gene3D G3DSA:1.10.3720.10 70 313 4.3E-61 T 13-10-2018 IPR035906 MetI-like superfamily trd_1137 586edf733cc591de859674aa7be0db82 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 303 4.5E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0808 caa2827bae294a408c3d9c15773a54a3 408 Pfam PF13439 Glycosyltransferase Family 4 46 196 4.9E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_0808 caa2827bae294a408c3d9c15773a54a3 408 Gene3D G3DSA:3.40.50.2000 44 213 9.5E-10 T 13-10-2018 trd_0808 caa2827bae294a408c3d9c15773a54a3 408 SUPERFAMILY SSF53756 44 405 2.0E-72 T 13-10-2018 trd_0808 caa2827bae294a408c3d9c15773a54a3 408 Gene3D G3DSA:3.40.50.2000 217 405 1.3E-43 T 13-10-2018 trd_0808 caa2827bae294a408c3d9c15773a54a3 408 Pfam PF00534 Glycosyl transferases group 1 224 383 7.0E-28 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_A0735 f833c8812199f937848251895646d3d7 410 Pfam PF08668 HDOD domain 216 328 2.4E-15 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD trd_A0735 f833c8812199f937848251895646d3d7 410 SUPERFAMILY SSF109604 211 403 1.29E-32 T 13-10-2018 trd_A0735 f833c8812199f937848251895646d3d7 410 Gene3D G3DSA:1.10.3210.10 210 334 1.6E-22 T 13-10-2018 trd_A0735 f833c8812199f937848251895646d3d7 410 PIRSF PIRSF003180 1 408 2.4E-62 T 13-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing trd_1121 088774219cf5ab9ab6e3d927f6e6ba05 635 Pfam PF13641 Glycosyltransferase like family 2 256 481 1.1E-27 T 13-10-2018 trd_1121 088774219cf5ab9ab6e3d927f6e6ba05 635 Gene3D G3DSA:3.90.550.10 245 463 4.8E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1121 088774219cf5ab9ab6e3d927f6e6ba05 635 SUPERFAMILY SSF53448 258 530 1.03E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1121 088774219cf5ab9ab6e3d927f6e6ba05 635 SUPERFAMILY SSF160246 15 155 8.89E-32 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily trd_1121 088774219cf5ab9ab6e3d927f6e6ba05 635 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 53 155 1.2E-17 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 PIRSF PIRSF001554 13 390 7.0E-147 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 Pfam PF08442 ATP-grasp domain 14 206 1.4E-69 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 SUPERFAMILY SSF52210 243 387 5.76E-50 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 Gene3D G3DSA:3.30.470.20 13 238 1.8E-87 T 13-10-2018 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 261 286 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 Gene3D G3DSA:3.40.50.261 244 390 6.2E-55 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 Pfam PF00549 CoA-ligase 266 384 4.1E-22 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 SUPERFAMILY SSF56059 13 242 1.75E-72 T 13-10-2018 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 Gene3D G3DSA:3.30.1490.20 33 108 1.8E-87 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 13 387 1.2E-148 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1804 be9e6a2c1546fc4659bf23d54f1a3de5 390 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 13 388 42.287 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1381 928f809ae4ace22fca942af443fe15d9 464 Gene3D G3DSA:3.50.50.60 2 445 1.8E-138 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1381 928f809ae4ace22fca942af443fe15d9 464 Pfam PF01593 Flavin containing amine oxidoreductase 8 453 1.8E-55 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 trd_1381 928f809ae4ace22fca942af443fe15d9 464 SUPERFAMILY SSF51905 1 453 3.24E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1381 928f809ae4ace22fca942af443fe15d9 464 Gene3D G3DSA:1.10.3110.10 101 194 1.8E-138 T 13-10-2018 trd_1381 928f809ae4ace22fca942af443fe15d9 464 Gene3D G3DSA:3.90.660.20 33 403 1.8E-138 T 13-10-2018 trd_1381 928f809ae4ace22fca942af443fe15d9 464 SUPERFAMILY SSF54373 296 404 1.0E-21 T 13-10-2018 trd_1381 928f809ae4ace22fca942af443fe15d9 464 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 1 453 9.6E-75 T 13-10-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 trd_A0081 927a3f59451ca577e69704d800cb45fd 259 SUPERFAMILY SSF52540 15 254 1.66E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0081 927a3f59451ca577e69704d800cb45fd 259 Gene3D G3DSA:3.40.50.300 3 254 1.3E-62 T 13-10-2018 trd_A0081 927a3f59451ca577e69704d800cb45fd 259 Pfam PF00005 ABC transporter 32 185 3.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0081 927a3f59451ca577e69704d800cb45fd 259 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 255 1.3E-9 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal trd_A0081 927a3f59451ca577e69704d800cb45fd 259 SMART SM00382 40 233 2.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0889 b156052e50b16eaeddfb45c4891f8243 382 SUPERFAMILY SSF54373 222 311 8.73E-6 T 13-10-2018 trd_0889 b156052e50b16eaeddfb45c4891f8243 382 SUPERFAMILY SSF51905 5 377 7.12E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0889 b156052e50b16eaeddfb45c4891f8243 382 Pfam PF01266 FAD dependent oxidoreductase 6 351 1.2E-75 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0889 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.30.9.10 86 311 2.7E-120 T 13-10-2018 trd_0889 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.50.50.60 7 367 2.7E-120 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0547 8440579118d11b91ede0ad1a46618b23 143 Gene3D G3DSA:3.30.300.20 1 142 1.2E-40 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_A0547 8440579118d11b91ede0ad1a46618b23 143 SUPERFAMILY SSF82784 3 137 1.44E-37 T 13-10-2018 IPR036102 OsmC/Ohr superfamily trd_A0547 8440579118d11b91ede0ad1a46618b23 143 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 4 136 9.3E-49 T 13-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 trd_A0547 8440579118d11b91ede0ad1a46618b23 143 Pfam PF02566 OsmC-like protein 40 130 2.3E-19 T 13-10-2018 IPR003718 OsmC/Ohr family trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 Gene3D G3DSA:3.30.565.10 324 455 2.9E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 SMART SM00065 99 244 2.8E-21 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 Gene3D G3DSA:3.30.450.40 94 243 6.2E-40 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 Pfam PF07730 Histidine kinase 251 318 4.4E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 455 4.3E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 SMART SM00387 361 457 3.5E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 Pfam PF13185 GAF domain 99 235 1.2E-22 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 SUPERFAMILY SSF55781 81 259 3.93E-32 T 13-10-2018 trd_1552 1dc58a558a2eaeeebbb56534142d73b9 473 SUPERFAMILY SSF55874 320 455 9.3E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_0647 4043a13948951b1804c124c4bca797c3 496 SMART SM01329 22 352 5.3E-165 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 trd_0647 4043a13948951b1804c124c4bca797c3 496 SUPERFAMILY SSF53659 18 356 8.64E-119 T 13-10-2018 trd_0647 4043a13948951b1804c124c4bca797c3 496 Gene3D G3DSA:3.30.70.1570 387 496 3.2E-30 T 13-10-2018 trd_0647 4043a13948951b1804c124c4bca797c3 496 Gene3D G3DSA:3.40.718.10 7 386 5.5E-155 T 13-10-2018 trd_0647 4043a13948951b1804c124c4bca797c3 496 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 23 352 5.3E-108 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 trd_0647 4043a13948951b1804c124c4bca797c3 496 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 trd_0613 b95511b92241021384870a2aa070214b 235 Gene3D G3DSA:3.20.20.70 11 232 8.4E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0613 b95511b92241021384870a2aa070214b 235 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 39 53 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 trd_0613 b95511b92241021384870a2aa070214b 235 Pfam PF00834 Ribulose-phosphate 3 epimerase family 12 208 1.7E-76 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 trd_0613 b95511b92241021384870a2aa070214b 235 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 12 214 2.1E-80 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 trd_0613 b95511b92241021384870a2aa070214b 235 SUPERFAMILY SSF51366 6 227 1.35E-70 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0613 b95511b92241021384870a2aa070214b 235 PIRSF PIRSF001461 7 234 1.1E-84 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 trd_1039 45585af064da237f6f7abcc155a8db60 105 SMART SM00418 15 93 0.0095 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1039 45585af064da237f6f7abcc155a8db60 105 Gene3D G3DSA:1.10.10.10 6 105 1.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1039 45585af064da237f6f7abcc155a8db60 105 SUPERFAMILY SSF46785 7 104 7.29E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1039 45585af064da237f6f7abcc155a8db60 105 Pfam PF01638 HxlR-like helix-turn-helix 20 104 1.1E-20 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 SUPERFAMILY SSF55174 3 216 6.93E-68 T 13-10-2018 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 Gene3D G3DSA:1.10.1050.10 6 216 1.2E-87 T 13-10-2018 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 SMART SM00363 105 167 7.8E-20 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 104 1.4E-31 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 216 37.13 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 Gene3D G3DSA:3.10.290.10 104 200 1.2E-87 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 Pfam PF01479 S4 domain 106 152 5.1E-22 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 216 1.5E-71 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 ProSitePatterns PS00632 Ribosomal protein S4 signature. 103 127 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0958 c406b0fb636b9c2fa3424d2c188f9a92 217 SMART SM01390 3 104 7.2E-51 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 trd_1383 93ecbcce440908b958d23718b59ea8da 318 Gene3D G3DSA:3.40.50.1400 8 306 2.1E-103 T 13-10-2018 trd_1383 93ecbcce440908b958d23718b59ea8da 318 TIGRFAM TIGR00109 hemH: ferrochelatase 3 309 6.3E-73 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 trd_1383 93ecbcce440908b958d23718b59ea8da 318 Hamap MF_00323 Ferrochelatase [hemH]. 4 310 31.424 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 trd_1383 93ecbcce440908b958d23718b59ea8da 318 Pfam PF00762 Ferrochelatase 6 309 5.5E-82 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 trd_1383 93ecbcce440908b958d23718b59ea8da 318 Gene3D G3DSA:3.40.50.1400 151 291 2.1E-103 T 13-10-2018 trd_1383 93ecbcce440908b958d23718b59ea8da 318 SUPERFAMILY SSF53800 3 310 3.27E-82 T 13-10-2018 trd_1383 93ecbcce440908b958d23718b59ea8da 318 ProSitePatterns PS00534 Ferrochelatase signature. 181 199 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 Gene3D G3DSA:2.40.30.170 46 262 3.6E-40 T 13-10-2018 trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 256 3.6E-15 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 Gene3D G3DSA:2.40.50.100 58 180 3.6E-40 T 13-10-2018 trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 Gene3D G3DSA:1.10.287.470 92 148 3.6E-40 T 13-10-2018 trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 321 2.1E-40 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 Gene3D G3DSA:2.40.420.20 38 320 3.6E-40 T 13-10-2018 trd_0220 01ac97f1bd8cbe8d13f043009865e39e 326 SUPERFAMILY SSF111369 45 260 8.63E-13 T 13-10-2018 trd_0955 6a8a308a0f488d743ed40bc841539651 279 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 4 260 32.906 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0955 6a8a308a0f488d743ed40bc841539651 279 SUPERFAMILY SSF55120 4 266 7.34E-78 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0955 6a8a308a0f488d743ed40bc841539651 279 Gene3D G3DSA:3.30.70.580 2 107 9.6E-35 T 13-10-2018 trd_0955 6a8a308a0f488d743ed40bc841539651 279 Gene3D G3DSA:3.30.70.660 108 263 3.6E-42 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 trd_0955 6a8a308a0f488d743ed40bc841539651 279 PIRSF PIRSF001430 3 277 1.7E-73 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0955 6a8a308a0f488d743ed40bc841539651 279 Pfam PF01416 tRNA pseudouridine synthase 145 261 3.7E-24 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0955 6a8a308a0f488d743ed40bc841539651 279 Pfam PF01416 tRNA pseudouridine synthase 12 95 1.1E-6 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0955 6a8a308a0f488d743ed40bc841539651 279 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 8 255 1.3E-51 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0791 3c645af9d68df142d8b1daa5cf7439c2 148 Pfam PF09350 Domain of unknown function (DUF1992) 7 71 1.2E-20 T 13-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 PRINTS PR00990 Ribokinase signature 190 205 8.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 PRINTS PR00990 Ribokinase signature 120 133 8.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 PRINTS PR00990 Ribokinase signature 22 43 8.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 PRINTS PR00990 Ribokinase signature 49 68 8.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 PRINTS PR00990 Ribokinase signature 231 242 8.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 54 78 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 SUPERFAMILY SSF53613 16 315 1.54E-63 T 13-10-2018 IPR029056 Ribokinase-like trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 Pfam PF00294 pfkB family carbohydrate kinase 20 308 1.2E-54 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 Hamap MF_01987 Ribokinase [rbsK]. 18 315 21.04 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 Gene3D G3DSA:3.40.1190.20 11 320 5.0E-77 T 13-10-2018 IPR029056 Ribokinase-like trd_0704 5dae4ebb5228dc8684c7e6aae478b01b 326 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 260 273 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_1487 23a6124a6d9a76557bba6663bff1ab44 427 SUPERFAMILY SSF103473 15 408 6.15E-71 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1487 23a6124a6d9a76557bba6663bff1ab44 427 ProSitePatterns PS00216 Sugar transport proteins signature 1. 77 94 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_1487 23a6124a6d9a76557bba6663bff1ab44 427 Gene3D G3DSA:1.20.1250.20 19 255 7.3E-51 T 13-10-2018 trd_1487 23a6124a6d9a76557bba6663bff1ab44 427 Pfam PF07690 Major Facilitator Superfamily 31 253 8.6E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1487 23a6124a6d9a76557bba6663bff1ab44 427 Gene3D G3DSA:1.20.1720.10 256 423 2.3E-16 T 13-10-2018 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 Hamap MF_00335 Ribonuclease Y [rny]. 4 509 24.78 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 Pfam PF00013 KH domain 201 259 3.5E-8 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 SMART SM00471 321 427 3.2E-13 T 13-10-2018 IPR003607 HD/PDEase domain trd_1879 10e606ddf01fec74e0260174f843c3e9 509 SUPERFAMILY SSF54791 197 293 6.77E-18 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 Gene3D G3DSA:3.30.1370.10 199 292 1.9E-10 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 Gene3D G3DSA:1.10.3210.10 307 460 1.6E-20 T 13-10-2018 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 SUPERFAMILY SSF109604 307 438 2.3E-31 T 13-10-2018 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 Pfam PF01966 HD domain 325 416 1.1E-18 T 13-10-2018 IPR006674 HD domain trd_1879 10e606ddf01fec74e0260174f843c3e9 509 TIGRFAM TIGR00277 HDIG: HDIG domain 321 398 4.9E-23 T 13-10-2018 IPR006675 HDIG domain trd_1879 10e606ddf01fec74e0260174f843c3e9 509 Pfam PF12072 Domain of unknown function (DUF3552) 6 194 3.4E-37 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal trd_1879 10e606ddf01fec74e0260174f843c3e9 509 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 9 509 5.5E-212 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 trd_1879 10e606ddf01fec74e0260174f843c3e9 509 SMART SM00322 197 264 5.1E-10 T 13-10-2018 IPR004087 K Homology domain GO:0003676 trd_0490 faf14f1de49d94ccfd74a14eeafa7e75 328 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 8 306 2.1E-24 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0490 faf14f1de49d94ccfd74a14eeafa7e75 328 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 4 303 3.5E-56 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0385 533a1459f17a99cc2e53a53a863633f4 190 Pfam PF00929 Exonuclease 21 175 1.2E-18 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_0385 533a1459f17a99cc2e53a53a863633f4 190 SMART SM00479 19 188 8.6E-32 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_0385 533a1459f17a99cc2e53a53a863633f4 190 SUPERFAMILY SSF53098 20 187 1.01E-36 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_0385 533a1459f17a99cc2e53a53a863633f4 190 Gene3D G3DSA:3.30.420.10 15 186 6.8E-39 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_0492 6884d6a1b789a276d203556190ce17b8 544 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 2.8E-5 T 13-10-2018 trd_0492 6884d6a1b789a276d203556190ce17b8 544 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 2.8E-5 T 13-10-2018 trd_0492 6884d6a1b789a276d203556190ce17b8 544 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 2.8E-5 T 13-10-2018 trd_0492 6884d6a1b789a276d203556190ce17b8 544 Pfam PF07690 Major Facilitator Superfamily 200 429 3.0E-20 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_0492 6884d6a1b789a276d203556190ce17b8 544 Pfam PF07690 Major Facilitator Superfamily 15 193 9.2E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_0492 6884d6a1b789a276d203556190ce17b8 544 SUPERFAMILY SSF103473 200 522 1.31E-33 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0492 6884d6a1b789a276d203556190ce17b8 544 SUPERFAMILY SSF103473 5 191 2.09E-46 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0492 6884d6a1b789a276d203556190ce17b8 544 Gene3D G3DSA:1.20.1720.10 12 219 5.3E-53 T 13-10-2018 trd_0492 6884d6a1b789a276d203556190ce17b8 544 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 518 2.1E-82 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 trd_0492 6884d6a1b789a276d203556190ce17b8 544 Gene3D G3DSA:1.20.1250.20 279 450 2.1E-21 T 13-10-2018 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 SUPERFAMILY SSF51905 1 311 9.5E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 Gene3D G3DSA:3.50.50.60 6 305 2.1E-97 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 Gene3D G3DSA:3.50.50.60 128 246 2.1E-97 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.7E-19 T 13-10-2018 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 1.7E-19 T 13-10-2018 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.7E-19 T 13-10-2018 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.7E-19 T 13-10-2018 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 2.0E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 4.6E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 4.6E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 4.6E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 4.6E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_A0344 5bbe21ab79ee6d43f1e6b9d78c0f30e5 340 Hamap MF_01685 Ferredoxin--NADP reductase. 6 329 38.846 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 trd_0648 ca29b349091755bbcbe1269659c2b803 454 PRINTS PR00419 Adrenodoxin reductase family signature 29 42 3.1E-5 T 13-10-2018 trd_0648 ca29b349091755bbcbe1269659c2b803 454 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 3.1E-5 T 13-10-2018 trd_0648 ca29b349091755bbcbe1269659c2b803 454 Gene3D G3DSA:3.90.660.50 85 387 3.4E-35 T 13-10-2018 trd_0648 ca29b349091755bbcbe1269659c2b803 454 SUPERFAMILY SSF51905 6 434 7.12E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0648 ca29b349091755bbcbe1269659c2b803 454 Pfam PF01593 Flavin containing amine oxidoreductase 14 410 4.6E-20 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 trd_0648 ca29b349091755bbcbe1269659c2b803 454 Gene3D G3DSA:3.50.50.60 9 406 3.4E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1011 72ffc6c76a3deddeeb7f2603df4fc472 483 Pfam PF00437 Type II/IV secretion system protein 129 404 1.4E-85 T 13-10-2018 IPR001482 Type II/IV secretion system protein trd_1011 72ffc6c76a3deddeeb7f2603df4fc472 483 Gene3D G3DSA:3.30.450.380 48 223 1.2E-47 T 13-10-2018 trd_1011 72ffc6c76a3deddeeb7f2603df4fc472 483 SUPERFAMILY SSF52540 114 411 1.33E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1011 72ffc6c76a3deddeeb7f2603df4fc472 483 Gene3D G3DSA:3.40.50.300 224 451 2.4E-74 T 13-10-2018 trd_0782 35e81407bd74d34c98cb3c8c46f3daf8 572 Gene3D G3DSA:3.40.190.10 84 549 4.9E-142 T 13-10-2018 trd_0782 35e81407bd74d34c98cb3c8c46f3daf8 572 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 116 479 5.4E-83 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_0782 35e81407bd74d34c98cb3c8c46f3daf8 572 PIRSF PIRSF002741 23 560 1.1E-115 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_0782 35e81407bd74d34c98cb3c8c46f3daf8 572 SUPERFAMILY SSF53850 71 555 5.43E-127 T 13-10-2018 trd_0782 35e81407bd74d34c98cb3c8c46f3daf8 572 Gene3D G3DSA:3.90.76.10 104 222 4.9E-142 T 13-10-2018 trd_0782 35e81407bd74d34c98cb3c8c46f3daf8 572 Gene3D G3DSA:3.10.105.10 317 535 4.9E-142 T 13-10-2018 trd_1403 b622c5e1697f9ce891c5a9993908e6d1 445 Pfam PF13458 Periplasmic binding protein 73 405 8.6E-55 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_1403 b622c5e1697f9ce891c5a9993908e6d1 445 Gene3D G3DSA:3.40.50.2300 200 333 5.6E-64 T 13-10-2018 trd_1403 b622c5e1697f9ce891c5a9993908e6d1 445 Gene3D G3DSA:3.40.50.2300 75 402 5.6E-64 T 13-10-2018 trd_1403 b622c5e1697f9ce891c5a9993908e6d1 445 SUPERFAMILY SSF53822 72 427 1.86E-66 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 PRINTS PR00061 Ribosomal protein L19 signature 89 114 4.8E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 PRINTS PR00061 Ribosomal protein L19 signature 4 33 4.8E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 PRINTS PR00061 Ribosomal protein L19 signature 34 63 4.8E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 ProSitePatterns PS01015 Ribosomal protein L19 signature. 87 102 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 PIRSF PIRSF002191 1 121 2.0E-49 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 115 32.032 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 114 6.5E-48 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 Gene3D G3DSA:2.30.30.790 8 116 3.6E-16 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 SUPERFAMILY SSF50104 1 117 3.31E-46 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily trd_1048 ce2a8c72d6909f36d96e5f63977efa9c 123 Pfam PF01245 Ribosomal protein L19 4 114 2.8E-48 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:1.10.150.20 445 517 4.6E-24 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 525 544 1200.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 459 478 730.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 557 576 0.015 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 493 512 2.7 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:1.10.287.610 13 82 2.0E-29 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF52113 609 684 3.27E-17 T 13-10-2018 IPR036420 BRCT domain superfamily trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:2.40.50.140 332 404 1.2E-30 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 126 155 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site trd_0210 cd2946b739b111885fbdaadd981e963d 695 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 23 678 4.2E-251 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:3.40.50.10190 606 691 2.6E-25 T 13-10-2018 IPR036420 BRCT domain superfamily trd_0210 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF47781 418 596 5.19E-62 T 13-10-2018 IPR010994 RuvA domain 2-like trd_0210 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF50249 332 414 2.91E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0210 cd2946b739b111885fbdaadd981e963d 695 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 421 447 2.7E-10 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Hamap MF_01588 DNA ligase [ligA]. 14 682 52.478 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:3.30.470.90 83 331 3.8E-96 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF56091 15 330 6.72E-115 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:1.10.150.20 518 599 1.3E-31 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 345 360 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site trd_0210 cd2946b739b111885fbdaadd981e963d 695 SMART SM00532 15 461 4.5E-253 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:2.20.70.80 405 442 9.4E-9 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 15 331 1.3E-123 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 608 681 1.4E-11 T 13-10-2018 IPR001357 BRCT domain trd_0210 cd2946b739b111885fbdaadd981e963d 695 Pfam PF14520 Helix-hairpin-helix domain 460 512 7.2E-5 T 13-10-2018 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 335 412 7.2E-31 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 SMART SM00292 608 685 2.8E-13 T 13-10-2018 IPR001357 BRCT domain trd_0210 cd2946b739b111885fbdaadd981e963d 695 PIRSF PIRSF001604 8 687 1.6E-242 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 trd_0210 cd2946b739b111885fbdaadd981e963d 695 Pfam PF12826 Helix-hairpin-helix motif 523 586 9.5E-27 T 13-10-2018 trd_1957 3e5ae9f67915a43b34899e348dde955b 420 SMART SM00922 153 271 1.8E-15 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_1957 3e5ae9f67915a43b34899e348dde955b 420 Gene3D G3DSA:3.30.390.10 26 417 3.3E-166 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_1957 3e5ae9f67915a43b34899e348dde955b 420 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 221 252 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_1957 3e5ae9f67915a43b34899e348dde955b 420 SUPERFAMILY SSF51604 123 400 2.88E-72 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1957 3e5ae9f67915a43b34899e348dde955b 420 Pfam PF13378 Enolase C-terminal domain-like 157 391 7.3E-49 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_1957 3e5ae9f67915a43b34899e348dde955b 420 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 110 135 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_1957 3e5ae9f67915a43b34899e348dde955b 420 SUPERFAMILY SSF54826 40 137 1.62E-28 T 13-10-2018 trd_1957 3e5ae9f67915a43b34899e348dde955b 420 Gene3D G3DSA:3.20.20.120 130 382 3.3E-166 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1957 3e5ae9f67915a43b34899e348dde955b 420 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 37 135 5.0E-21 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_1857 f86776afd712ea1559ca1586d4459e50 76 Pfam PF06107 Bacterial protein of unknown function (DUF951) 5 58 3.5E-25 T 13-10-2018 IPR009296 Protein of unknown function DUF951 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 Gene3D G3DSA:3.40.50.10860 40 184 9.9E-67 T 13-10-2018 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 SUPERFAMILY SSF51735 186 420 1.44E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 SMART SM00839 188 418 3.3E-111 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 Gene3D G3DSA:3.40.50.720 186 421 2.3E-97 T 13-10-2018 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 95 109 1.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 177 199 1.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 219 239 1.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 346 357 1.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 PIRSF PIRSF000185 6 421 9.4E-176 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 186 418 1.2E-79 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 40 166 6.2E-57 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 SUPERFAMILY SSF53223 9 188 1.18E-67 T 13-10-2018 trd_1476 9704e6fa4598f026792bee6acf7aa47b 421 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 103 116 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 trd_0603 b168b2900e50a9b5144a75cd6801e6a4 303 Pfam PF12706 Beta-lactamase superfamily domain 31 266 3.5E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0603 b168b2900e50a9b5144a75cd6801e6a4 303 Gene3D G3DSA:3.60.15.10 2 294 6.9E-72 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0603 b168b2900e50a9b5144a75cd6801e6a4 303 Hamap MF_01818 Ribonuclease BN [rbn]. 2 298 30.182 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 trd_0603 b168b2900e50a9b5144a75cd6801e6a4 303 SUPERFAMILY SSF56281 4 280 5.5E-66 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PIRSF PIRSF000099 10 445 3.1E-162 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 Gene3D G3DSA:3.40.50.1980 49 247 9.8E-118 T 13-10-2018 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 6 442 40.594 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 50 441 5.3E-156 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 244 276 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 Gene3D G3DSA:3.40.50.1980 248 364 9.8E-118 T 13-10-2018 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 215 240 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 244 265 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 150 176 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 376 394 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 50 74 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 335 360 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 185 211 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 266 285 1.0E-81 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 Pfam PF00815 Histidinol dehydrogenase 48 442 6.1E-154 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 trd_0637 df2acfd0e9c96b00869bc148c7747041 448 SUPERFAMILY SSF53720 47 442 1.73E-73 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 trd_1147 a9418bc7553d78eb5c742ec9850577f1 136 Gene3D G3DSA:1.20.120.80 1 135 1.3E-6 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1147 a9418bc7553d78eb5c742ec9850577f1 136 Pfam PF04238 Protein of unknown function (DUF420) 5 133 3.5E-37 T 13-10-2018 IPR007352 Protein of unknown function DUF420 trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 SUPERFAMILY SSF75217 95 263 7.19E-35 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 32 104 4.9E-8 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 Gene3D G3DSA:3.40.1280.10 112 270 1.7E-48 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 SMART SM00967 32 107 9.3E-10 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 Pfam PF00588 SpoU rRNA Methylase family 118 254 9.4E-28 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 Gene3D G3DSA:3.30.1330.30 4 105 9.3E-25 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like trd_0830 ef94b94a21cb45ae6398396d779e7c73 271 SUPERFAMILY SSF55315 4 105 2.59E-23 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 Pfam PF00072 Response regulator receiver domain 21 129 3.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 SUPERFAMILY SSF52172 16 138 4.98E-41 T 13-10-2018 IPR011006 CheY-like superfamily trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 Gene3D G3DSA:1.10.10.10 139 242 4.3E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 SMART SM00862 163 238 3.6E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 SUPERFAMILY SSF46894 140 240 2.44E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 SMART SM00448 19 129 2.4E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 Gene3D G3DSA:3.40.50.2300 7 138 1.5E-37 T 13-10-2018 trd_1833 17c58fb1496cabf197fd9fdfaf4356dd 253 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 238 2.6E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_A0543 6621f45862daad07c94d418d035c9d81 301 Gene3D G3DSA:3.20.20.70 4 288 4.6E-114 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0543 6621f45862daad07c94d418d035c9d81 301 Pfam PF00682 HMGL-like 7 279 6.7E-45 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 trd_A0543 6621f45862daad07c94d418d035c9d81 301 SUPERFAMILY SSF51569 3 287 3.11E-67 T 13-10-2018 trd_A0137 ee68726f1ad81d190b84c65045cf92c3 237 Gene3D G3DSA:3.90.550.10 1 209 8.9E-50 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0137 ee68726f1ad81d190b84c65045cf92c3 237 SUPERFAMILY SSF53448 6 212 5.25E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0137 ee68726f1ad81d190b84c65045cf92c3 237 Pfam PF00535 Glycosyl transferase family 2 11 140 4.1E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_0801 a549f91d6b2b655daa24443822b98741 163 SUPERFAMILY SSF53098 2 154 1.44E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_0801 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 60 76 2.3E-34 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 2.3E-34 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 106 125 2.3E-34 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 2.3E-34 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 82 98 2.3E-34 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 155 1.2E-35 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 153 41.622 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 112 147 - T 13-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 trd_0801 a549f91d6b2b655daa24443822b98741 163 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 149 3.2E-47 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 trd_0801 a549f91d6b2b655daa24443822b98741 163 Gene3D G3DSA:3.30.420.10 1 161 6.0E-50 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_0087 356c958b387838e556064953776c84aa 378 Gene3D G3DSA:3.40.50.2000 68 361 1.6E-56 T 13-10-2018 trd_0087 356c958b387838e556064953776c84aa 378 SUPERFAMILY SSF53756 21 365 1.77E-72 T 13-10-2018 trd_0087 356c958b387838e556064953776c84aa 378 Gene3D G3DSA:3.40.50.2000 172 348 1.6E-56 T 13-10-2018 trd_0087 356c958b387838e556064953776c84aa 378 Pfam PF00534 Glycosyl transferases group 1 186 343 8.9E-36 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0540 56662d7c8a5160c265d834c8c5847668 214 SUPERFAMILY SSF48613 4 207 3.71E-53 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 trd_0540 56662d7c8a5160c265d834c8c5847668 214 Pfam PF03070 TENA/THI-4/PQQC family 11 208 7.8E-32 T 13-10-2018 IPR004305 Thiaminase-2/PQQC trd_0540 56662d7c8a5160c265d834c8c5847668 214 PIRSF PIRSF003170 2 211 2.1E-35 T 13-10-2018 IPR026285 TenA_E protein trd_0540 56662d7c8a5160c265d834c8c5847668 214 Gene3D G3DSA:1.20.910.10 2 209 4.1E-58 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 206 231 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 237 257 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 259 279 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 125 148 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 16 32 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 45 71 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 283 309 1.4E-67 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 PIRSF PIRSF003161 10 343 8.2E-113 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 Gene3D G3DSA:1.10.220.30 115 205 1.1E-31 T 13-10-2018 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 SUPERFAMILY SSF48029 125 336 2.09E-66 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 Pfam PF14842 FliG N-terminal domain 16 118 2.7E-29 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 12 340 2.1E-115 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 Pfam PF14841 FliG middle domain 126 200 5.5E-29 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 Gene3D G3DSA:1.10.220.30 206 343 9.9E-50 T 13-10-2018 trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 Pfam PF01706 FliG C-terminal domain 228 335 8.9E-42 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 SUPERFAMILY SSF48029 17 126 6.8E-20 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical trd_A0650 b280ac74290eacace4dbbd58bf7d4160 344 Gene3D G3DSA:1.10.220.30 9 93 3.0E-16 T 13-10-2018 trd_1802 99c84115ae941a4df7e3bd98c13a1598 215 SUPERFAMILY SSF53639 8 212 4.12E-55 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily trd_1802 99c84115ae941a4df7e3bd98c13a1598 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 184 1.2E-41 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal trd_1802 99c84115ae941a4df7e3bd98c13a1598 215 SMART SM01007 9 185 5.8E-50 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal trd_1802 99c84115ae941a4df7e3bd98c13a1598 215 Gene3D G3DSA:3.40.225.10 7 214 6.8E-55 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily trd_1172 b73b1c42392111e8122c2feb144bdd92 299 Gene3D G3DSA:3.40.250.10 159 299 2.6E-45 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1172 b73b1c42392111e8122c2feb144bdd92 299 SUPERFAMILY SSF52821 175 298 3.01E-40 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1172 b73b1c42392111e8122c2feb144bdd92 299 SUPERFAMILY SSF52821 15 151 2.75E-39 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1172 b73b1c42392111e8122c2feb144bdd92 299 ProSitePatterns PS00683 Rhodanese C-terminal signature. 279 289 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 trd_1172 b73b1c42392111e8122c2feb144bdd92 299 Pfam PF00581 Rhodanese-like domain 23 132 7.9E-16 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1172 b73b1c42392111e8122c2feb144bdd92 299 Pfam PF00581 Rhodanese-like domain 177 290 5.3E-20 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1172 b73b1c42392111e8122c2feb144bdd92 299 SMART SM00450 168 295 7.8E-24 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1172 b73b1c42392111e8122c2feb144bdd92 299 SMART SM00450 22 136 4.4E-20 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1172 b73b1c42392111e8122c2feb144bdd92 299 ProSitePatterns PS00380 Rhodanese signature 1. 48 59 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 trd_1172 b73b1c42392111e8122c2feb144bdd92 299 Gene3D G3DSA:3.40.250.10 6 155 5.4E-45 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1658 9bc67938af176c2a40638de293e2ac39 572 Pfam PF00188 Cysteine-rich secretory protein family 42 162 2.2E-9 T 13-10-2018 IPR014044 CAP domain trd_1658 9bc67938af176c2a40638de293e2ac39 572 Gene3D G3DSA:3.40.33.10 23 168 1.3E-16 T 13-10-2018 IPR035940 CAP superfamily trd_1658 9bc67938af176c2a40638de293e2ac39 572 SUPERFAMILY SSF55797 35 166 4.19E-10 T 13-10-2018 IPR035940 CAP superfamily trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 Pfam PF13522 Glutamine amidotransferase domain 68 171 2.0E-17 T 13-10-2018 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 SUPERFAMILY SSF53697 259 602 2.34E-82 T 13-10-2018 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 Pfam PF01380 SIS domain 302 422 9.8E-22 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 Pfam PF01380 SIS domain 461 584 1.8E-19 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 Gene3D G3DSA:3.60.20.10 2 246 4.0E-59 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 Gene3D G3DSA:3.40.50.10490 444 588 3.9E-110 T 13-10-2018 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 602 7.9E-173 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 Gene3D G3DSA:3.40.50.10490 262 602 3.9E-110 T 13-10-2018 trd_0743 d80f3b37a70ceac5140eeda6ada7d7df 603 SUPERFAMILY SSF56235 2 238 1.72E-54 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_A0745 64bf8c78833ecf5eae96df3d12345d1d 519 Gene3D G3DSA:3.40.720.10 167 518 1.6E-39 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 trd_A0745 64bf8c78833ecf5eae96df3d12345d1d 519 SUPERFAMILY SSF53649 170 519 5.23E-54 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 trd_A0745 64bf8c78833ecf5eae96df3d12345d1d 519 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 170 483 1.4E-29 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 trd_1375 709899a59e948211a92fb5e87156c337 324 Pfam PF14572 Phosphoribosyl synthetase-associated domain 208 316 1.1E-21 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 trd_1375 709899a59e948211a92fb5e87156c337 324 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 trd_1375 709899a59e948211a92fb5e87156c337 324 Gene3D G3DSA:3.40.50.2020 11 304 9.5E-118 T 13-10-2018 trd_1375 709899a59e948211a92fb5e87156c337 324 SUPERFAMILY SSF53271 73 306 1.09E-56 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_1375 709899a59e948211a92fb5e87156c337 324 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 124 8.3E-45 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 trd_1375 709899a59e948211a92fb5e87156c337 324 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 9 313 6.3E-113 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 trd_1375 709899a59e948211a92fb5e87156c337 324 Gene3D G3DSA:3.40.50.2020 151 292 9.5E-118 T 13-10-2018 trd_1375 709899a59e948211a92fb5e87156c337 324 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 8 316 45.524 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 trd_1375 709899a59e948211a92fb5e87156c337 324 SMART SM01400 8 124 4.9E-72 T 13-10-2018 trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 SUPERFAMILY SSF49503 189 373 7.53E-33 T 13-10-2018 IPR008972 Cupredoxin trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 Gene3D G3DSA:2.60.40.420 189 390 5.8E-30 T 13-10-2018 IPR008972 Cupredoxin trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 ProSitePatterns PS00079 Multicopper oxidases signature 1. 159 179 - T 13-10-2018 IPR033138 Multicopper oxidases, conserved site trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 SUPERFAMILY SSF49503 404 515 5.65E-35 T 13-10-2018 IPR008972 Cupredoxin trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 Pfam PF07732 Multicopper oxidase 78 184 5.6E-33 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 SUPERFAMILY SSF49503 61 184 5.74E-38 T 13-10-2018 IPR008972 Cupredoxin trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 Pfam PF00394 Multicopper oxidase 274 367 3.9E-17 T 13-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 ProSitePatterns PS00080 Multicopper oxidases signature 2. 498 509 - T 13-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 Pfam PF07731 Multicopper oxidase 412 515 1.0E-26 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 Gene3D G3DSA:2.60.40.420 393 516 3.7E-36 T 13-10-2018 IPR008972 Cupredoxin trd_A0228 163c07ae85844784aaa0e5ed6db57af8 516 Gene3D G3DSA:2.60.40.420 35 181 4.6E-41 T 13-10-2018 IPR008972 Cupredoxin trd_0987 f193256f99db21a898996e4204af7449 702 SUPERFAMILY SSF50447 272 411 3.79E-38 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0987 f193256f99db21a898996e4204af7449 702 PRINTS PR00315 GTP-binding elongation factor signature 103 114 3.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 PRINTS PR00315 GTP-binding elongation factor signature 21 34 3.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 PRINTS PR00315 GTP-binding elongation factor signature 67 75 3.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 PRINTS PR00315 GTP-binding elongation factor signature 139 148 3.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 PRINTS PR00315 GTP-binding elongation factor signature 87 97 3.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 Gene3D G3DSA:3.30.230.10 491 693 2.2E-96 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_0987 f193256f99db21a898996e4204af7449 702 Gene3D G3DSA:2.40.30.10 301 412 1.0E-45 T 13-10-2018 trd_0987 f193256f99db21a898996e4204af7449 702 Pfam PF03144 Elongation factor Tu domain 2 331 398 6.3E-14 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 Gene3D G3DSA:3.40.50.300 11 300 3.9E-110 T 13-10-2018 trd_0987 f193256f99db21a898996e4204af7449 702 SUPERFAMILY SSF52540 17 289 3.48E-110 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0987 f193256f99db21a898996e4204af7449 702 Pfam PF14492 Elongation Factor G, domain II 411 484 8.6E-35 T 13-10-2018 trd_0987 f193256f99db21a898996e4204af7449 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 60 75 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site trd_0987 f193256f99db21a898996e4204af7449 702 Pfam PF00009 Elongation factor Tu GTP binding domain 18 289 1.8E-68 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 SMART SM00889 487 605 1.0E-73 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 Hamap MF_00054_B Elongation factor G [fusA]. 15 698 112.951 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0987 f193256f99db21a898996e4204af7449 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 11 698 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0987 f193256f99db21a898996e4204af7449 702 SUPERFAMILY SSF54980 610 696 3.79E-32 T 13-10-2018 IPR035647 EF-G domain III/V-like trd_0987 f193256f99db21a898996e4204af7449 702 Gene3D G3DSA:3.30.70.240 611 681 2.2E-96 T 13-10-2018 trd_0987 f193256f99db21a898996e4204af7449 702 SUPERFAMILY SSF54211 486 606 3.29E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0987 f193256f99db21a898996e4204af7449 702 Pfam PF00679 Elongation factor G C-terminus 607 693 3.0E-33 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like trd_0987 f193256f99db21a898996e4204af7449 702 SUPERFAMILY SSF54980 409 487 6.47E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like trd_0987 f193256f99db21a898996e4204af7449 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 18 189 6.9E-31 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0987 f193256f99db21a898996e4204af7449 702 SMART SM00838 607 694 1.4E-56 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like trd_0987 f193256f99db21a898996e4204af7449 702 Gene3D G3DSA:3.30.70.870 413 487 1.2E-32 T 13-10-2018 trd_0987 f193256f99db21a898996e4204af7449 702 Pfam PF03764 Elongation factor G, domain IV 486 603 2.2E-47 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 trd_A0495 cfee06fe0b82b40f8fc34ab9e1a7ccf4 434 SUPERFAMILY SSF50998 77 410 4.51E-13 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily trd_A0495 cfee06fe0b82b40f8fc34ab9e1a7ccf4 434 Gene3D G3DSA:2.130.10.10 213 412 4.5E-11 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_0429 d6fdea4ec6970d91d8a49b11c54e48eb 421 Gene3D G3DSA:3.40.50.2000 225 375 6.5E-26 T 13-10-2018 trd_0429 d6fdea4ec6970d91d8a49b11c54e48eb 421 SUPERFAMILY SSF53756 108 343 2.72E-26 T 13-10-2018 trd_0429 d6fdea4ec6970d91d8a49b11c54e48eb 421 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 58 204 8.9E-19 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 trd_0429 d6fdea4ec6970d91d8a49b11c54e48eb 421 Pfam PF00534 Glycosyl transferases group 1 270 338 5.1E-8 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_A0831 68ec84cc493ddc7b38501867f0118579 117 SUPERFAMILY SSF46785 18 112 4.04E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0831 68ec84cc493ddc7b38501867f0118579 117 Pfam PF01022 Bacterial regulatory protein, arsR family 25 70 6.5E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0831 68ec84cc493ddc7b38501867f0118579 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 4.8E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0831 68ec84cc493ddc7b38501867f0118579 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 4.8E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0831 68ec84cc493ddc7b38501867f0118579 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 4.8E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0831 68ec84cc493ddc7b38501867f0118579 117 SMART SM00418 18 96 1.1E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0831 68ec84cc493ddc7b38501867f0118579 117 Gene3D G3DSA:1.10.10.10 3 107 2.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0035 c50eaf75f18436d2463116f508cbed70 183 Gene3D G3DSA:3.30.930.10 1 179 7.1E-47 T 13-10-2018 trd_0035 c50eaf75f18436d2463116f508cbed70 183 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 6 173 8.5E-34 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_0035 c50eaf75f18436d2463116f508cbed70 183 Pfam PF03099 Biotin/lipoate A/B protein ligase family 11 134 2.5E-11 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 trd_0035 c50eaf75f18436d2463116f508cbed70 183 SUPERFAMILY SSF55681 3 174 2.63E-43 T 13-10-2018 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 SUPERFAMILY SSF50104 143 196 2.49E-17 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 Gene3D G3DSA:2.30.30.30 139 196 2.4E-23 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 SMART SM00738 25 133 1.5E-45 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 28 196 6.2E-64 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 SMART SM00739 143 170 8.9E-6 T 13-10-2018 IPR005824 KOW trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 Gene3D G3DSA:3.30.70.940 21 138 5.1E-43 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 Pfam PF00467 KOW motif 146 178 4.7E-8 T 13-10-2018 IPR005824 KOW trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 25 197 25.235 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 SUPERFAMILY SSF82679 27 131 1.44E-39 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 PRINTS PR00338 Transcription termination factor NUSG signature 80 92 8.7E-19 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 PRINTS PR00338 Transcription termination factor NUSG signature 173 189 8.7E-19 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 PRINTS PR00338 Transcription termination factor NUSG signature 155 170 8.7E-19 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 trd_0680 e892e259ac38b8e4e630f9567d0c6d84 198 Pfam PF02357 Transcription termination factor nusG 27 129 2.9E-28 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 Gene3D G3DSA:3.30.160.20 6 78 1.3E-28 T 13-10-2018 trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 SUPERFAMILY SSF54211 85 163 2.05E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 5 168 33.04 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 SUPERFAMILY SSF54768 13 81 4.39E-21 T 13-10-2018 trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 15 167 3.4E-62 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 Pfam PF03719 Ribosomal protein S5, C-terminal domain 92 162 2.3E-28 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 Gene3D G3DSA:3.30.230.10 79 171 1.5E-34 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_0968 c24b79bab1d26d9d19105048ded83bd3 182 Pfam PF00333 Ribosomal protein S5, N-terminal domain 16 80 1.7E-27 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 Gene3D G3DSA:1.10.1370.20 229 601 4.7E-130 T 13-10-2018 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 7 596 2.4E-178 T 13-10-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 SUPERFAMILY SSF55486 5 579 1.65E-108 T 13-10-2018 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 Gene3D G3DSA:1.20.140.70 24 180 1.6E-38 T 13-10-2018 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 Gene3D G3DSA:1.10.287.830 182 227 2.3E-10 T 13-10-2018 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 Pfam PF01432 Peptidase family M3 205 585 1.4E-68 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 trd_A0908 e2f64fedf80524a89690f3a773679ce0 607 Pfam PF08439 Oligopeptidase F 117 184 3.3E-15 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Gene3D G3DSA:3.30.54.20 621 674 4.7E-53 T 13-10-2018 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Gene3D G3DSA:2.40.30.130 457 549 5.0E-9 T 13-10-2018 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF55186 549 716 1.1E-54 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 650 693 1.9E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Pfam PF02272 DHHA1 domain 730 866 6.4E-18 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Pfam PF01411 tRNA synthetases class II (A) 5 553 6.5E-191 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF55681 2 238 3.4E-81 T 13-10-2018 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Gene3D G3DSA:3.30.980.10 553 692 4.7E-53 T 13-10-2018 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Gene3D G3DSA:3.10.310.40 761 869 1.5E-26 T 13-10-2018 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Gene3D G3DSA:3.30.930.10 1 235 3.2E-97 T 13-10-2018 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 873 170.136 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SMART SM00863 650 693 3.4E-20 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF101353 239 440 3.92E-67 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 852 3.9E-277 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF50447 451 549 1.45E-19 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 192 203 5.8E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 269 285 5.8E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 69 80 5.8E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 219 232 5.8E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 trd_0726 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 293 306 5.8E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 9 232 41.511 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 PRINTS PR00395 Ribosomal protein S2 signature 44 53 1.1E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 PRINTS PR00395 Ribosomal protein S2 signature 203 217 1.1E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 PRINTS PR00395 Ribosomal protein S2 signature 165 182 1.1E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 PRINTS PR00395 Ribosomal protein S2 signature 182 193 1.1E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 PRINTS PR00395 Ribosomal protein S2 signature 13 31 1.1E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 PRINTS PR00395 Ribosomal protein S2 signature 94 111 1.1E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 Gene3D G3DSA:1.10.287.610 110 157 6.9E-89 T 13-10-2018 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 13 24 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 Gene3D G3DSA:3.40.50.10490 16 226 6.9E-89 T 13-10-2018 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 11 233 7.4E-95 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 Pfam PF00318 Ribosomal protein S2 16 231 6.5E-91 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0998 0d8dc3b2c2d43796cb6269e3c2d792b7 290 SUPERFAMILY SSF52313 13 239 1.57E-91 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily trd_0688 e8b9258049a0c63a138e4a401a119a64 304 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 121 237 3.3E-43 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal trd_0688 e8b9258049a0c63a138e4a401a119a64 304 Gene3D G3DSA:3.40.1700.10 106 256 1.5E-60 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily trd_0688 e8b9258049a0c63a138e4a401a119a64 304 Hamap MF_01499 Diadenylate cyclase [dacA]. 6 256 34.093 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 trd_0688 e8b9258049a0c63a138e4a401a119a64 304 SUPERFAMILY SSF143597 46 243 7.32E-64 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily trd_0688 e8b9258049a0c63a138e4a401a119a64 304 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 13 251 6.7E-76 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 trd_0688 e8b9258049a0c63a138e4a401a119a64 304 PIRSF PIRSF004793 6 268 4.6E-85 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 411 4.4E-145 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SMART SM00984 314 415 1.4E-45 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SUPERFAMILY SSF48179 199 296 1.16E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 415 3.4E-32 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 291 1.9E-38 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Gene3D G3DSA:3.40.50.720 230 436 7.7E-77 T 13-10-2018 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 PIRSF PIRSF000124 2 430 1.3E-144 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SUPERFAMILY SSF52413 301 425 1.29E-36 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SUPERFAMILY SSF51735 3 189 2.27E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Gene3D G3DSA:1.20.5.100 202 229 8.7E-19 T 13-10-2018 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Gene3D G3DSA:3.40.50.720 1 201 1.8E-73 T 13-10-2018 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 185 1.1E-61 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 trd_0813 36f6fe46445b511b7a4faaf5e2dd0b2a 438 PIRSF PIRSF500134 2 433 1.5E-169 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 trd_0344 27d4d04a1db55ee579666baef4f2cee9 330 SUPERFAMILY SSF53448 1 283 6.08E-60 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0344 27d4d04a1db55ee579666baef4f2cee9 330 Pfam PF00483 Nucleotidyl transferase 4 231 4.2E-27 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 trd_0344 27d4d04a1db55ee579666baef4f2cee9 330 Gene3D G3DSA:2.160.10.10 240 282 2.2E-5 T 13-10-2018 trd_0344 27d4d04a1db55ee579666baef4f2cee9 330 Gene3D G3DSA:3.90.550.10 1 239 3.8E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0854 f5876dd2353b010b44df365533e76107 295 SUPERFAMILY SSF47240 1 292 2.13E-100 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_0854 f5876dd2353b010b44df365533e76107 295 Pfam PF05067 Manganese containing catalase 1 293 6.2E-86 T 13-10-2018 IPR007760 Manganese catalase trd_0854 f5876dd2353b010b44df365533e76107 295 Gene3D G3DSA:1.20.1260.130 2 295 7.6E-116 T 13-10-2018 trd_A0924 60824ae96307e3d0b331548017363832 335 SUPERFAMILY SSF63380 115 207 5.55E-15 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel trd_A0924 60824ae96307e3d0b331548017363832 335 Pfam PF00175 Oxidoreductase NAD-binding domain 215 316 1.6E-13 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 trd_A0924 60824ae96307e3d0b331548017363832 335 SUPERFAMILY SSF54292 14 92 1.57E-17 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_A0924 60824ae96307e3d0b331548017363832 335 Gene3D G3DSA:3.40.50.80 208 335 8.9E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain trd_A0924 60824ae96307e3d0b331548017363832 335 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 45 53 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 trd_A0924 60824ae96307e3d0b331548017363832 335 SUPERFAMILY SSF52343 196 332 1.3E-27 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain trd_A0924 60824ae96307e3d0b331548017363832 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 140 152 8.9E-13 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 trd_A0924 60824ae96307e3d0b331548017363832 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 8.9E-13 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 trd_A0924 60824ae96307e3d0b331548017363832 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 155 162 8.9E-13 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 trd_A0924 60824ae96307e3d0b331548017363832 335 PRINTS PR00410 Phenol hydroxylase reductase family signature 302 310 8.9E-13 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 trd_A0924 60824ae96307e3d0b331548017363832 335 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 20 85 1.7E-11 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 trd_A0924 60824ae96307e3d0b331548017363832 335 Pfam PF00970 Oxidoreductase FAD-binding domain 116 204 4.9E-6 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 trd_A0924 60824ae96307e3d0b331548017363832 335 Gene3D G3DSA:2.40.30.10 110 204 1.3E-14 T 13-10-2018 trd_A0924 60824ae96307e3d0b331548017363832 335 Gene3D G3DSA:3.10.20.30 8 100 8.4E-18 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 TIGRFAM TIGR03989 Rxyl_3153: NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family 2 371 2.4E-158 T 13-10-2018 IPR023921 Alcohol dehydrogenase, zinc-type, actinomycetes KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 SUPERFAMILY SSF50129 1 191 2.59E-64 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 SUPERFAMILY SSF50129 323 371 2.31E-9 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 Pfam PF00107 Zinc-binding dehydrogenase 195 327 3.7E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 151 5.8E-26 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 SMART SM00829 10 369 4.9E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 Gene3D G3DSA:3.90.180.10 12 368 6.5E-129 T 13-10-2018 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 Gene3D G3DSA:3.40.50.720 172 314 6.5E-129 T 13-10-2018 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_A0386 849d66df35fdb5afb0de1b33ab016e25 372 SUPERFAMILY SSF51735 157 336 6.65E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SMART SM00487 253 468 5.7E-6 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SUPERFAMILY SSF52540 269 599 1.12E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Gene3D G3DSA:3.40.50.300 247 446 6.7E-15 T 13-10-2018 trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 16 224 1.8E-23 T 13-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 272 629 5.3E-78 T 13-10-2018 IPR006474 Helicase Cas3, CRISPR-associated, core trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Gene3D G3DSA:1.10.3210.30 4 168 7.5E-17 T 13-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SMART SM00490 511 597 6.9E-5 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Pfam PF00270 DEAD/DEAH box helicase 256 436 1.1E-9 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Pfam PF00271 Helicase conserved C-terminal domain 484 596 4.6E-5 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0020 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Gene3D G3DSA:3.40.50.300 451 629 5.4E-15 T 13-10-2018 trd_1679 69ee0f1070089aa11c6eaccf72f6248b 128 Pfam PF14489 QueF-like protein 40 118 4.9E-34 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 trd_1679 69ee0f1070089aa11c6eaccf72f6248b 128 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 128 50.594 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 trd_1679 69ee0f1070089aa11c6eaccf72f6248b 128 SUPERFAMILY SSF55620 4 109 1.19E-28 T 13-10-2018 trd_1679 69ee0f1070089aa11c6eaccf72f6248b 128 PIRSF PIRSF027377 1 124 1.1E-53 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 trd_1679 69ee0f1070089aa11c6eaccf72f6248b 128 Gene3D G3DSA:3.30.1130.10 3 126 8.2E-48 T 13-10-2018 trd_1679 69ee0f1070089aa11c6eaccf72f6248b 128 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 7 117 1.1E-55 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:1.20.120.160 14 153 3.5E-26 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF47226 21 144 7.07E-23 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM01231 189 249 4.8E-10 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:2.40.50.180 460 524 4.3E-21 T 13-10-2018 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF50341 889 1024 6.54E-17 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:2.30.30.40 898 1017 3.5E-13 T 13-10-2018 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Pfam PF00072 Response regulator receiver domain 748 855 1.5E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF55874 253 434 5.37E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF52172 743 871 3.84E-20 T 13-10-2018 IPR011006 CheY-like superfamily trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Pfam PF01627 Hpt domain 23 117 7.1E-16 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM00387 294 437 5.7E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM00448 745 868 6.7E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF47384 190 248 2.39E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:3.30.565.10 250 435 2.4E-52 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:2.30.30.40 438 564 4.3E-21 T 13-10-2018 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF50341 436 569 2.62E-22 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 297 435 4.0E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM00260 887 1024 1.9E-5 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM00260 437 569 2.9E-9 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM00260 599 725 9.9E-4 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 415 6.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 353 6.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 434 6.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:2.40.50.180 912 977 3.5E-13 T 13-10-2018 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:1.10.287.560 189 249 1.7E-6 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Gene3D G3DSA:3.40.50.2300 741 890 6.5E-20 T 13-10-2018 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Pfam PF01584 CheW-like domain 894 1024 1.1E-15 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Pfam PF01584 CheW-like domain 609 725 2.0E-8 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 Pfam PF01584 CheW-like domain 443 571 2.3E-16 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SMART SM00073 21 120 8.5E-15 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 trd_A0215 a091514d60bfb800dfaf04d1eab458fd 1032 SUPERFAMILY SSF50341 608 725 1.03E-12 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 trd_0847 b6ae82e464ca60a305d31ef9f6872260 344 Pfam PF06144 DNA polymerase III, delta subunit 21 154 2.0E-6 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 trd_0847 b6ae82e464ca60a305d31ef9f6872260 344 Gene3D G3DSA:1.10.8.60 125 231 7.2E-10 T 13-10-2018 trd_0847 b6ae82e464ca60a305d31ef9f6872260 344 SUPERFAMILY SSF48019 217 329 2.89E-8 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 6 423 7.9E-159 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Gene3D G3DSA:3.90.600.10 332 429 6.9E-35 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 SMART SM01209 105 297 7.1E-123 T 13-10-2018 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Gene3D G3DSA:3.30.1490.20 125 192 6.0E-20 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 SUPERFAMILY SSF52440 6 104 1.58E-33 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Gene3D G3DSA:3.40.50.20 5 97 3.9E-36 T 13-10-2018 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 SUPERFAMILY SSF56059 106 317 1.4E-58 T 13-10-2018 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 SUPERFAMILY SSF51246 332 421 1.31E-27 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 291 298 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Gene3D G3DSA:3.30.470.20 193 329 6.6E-55 T 13-10-2018 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 6 104 2.3E-33 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 5 424 40.8 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 SMART SM01210 332 424 3.3E-46 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 333 420 4.4E-28 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_1186 3ad4e8e23c5f552c30348480ae8644cb 437 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 105 297 1.0E-73 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 SUPERFAMILY SSF52540 247 493 5.13E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 Gene3D G3DSA:3.40.50.300 5 252 1.2E-57 T 13-10-2018 trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 Gene3D G3DSA:3.40.50.300 253 501 2.8E-36 T 13-10-2018 trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 Pfam PF00005 ABC transporter 27 174 2.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 Pfam PF00005 ABC transporter 280 431 9.1E-13 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 SUPERFAMILY SSF52540 10 235 4.8E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0024 9d253234aa450a20ae8d3f12c5268d71 511 SMART SM00382 35 253 8.4E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0347 295401159391c776a6316d5089ecc530 211 Pfam PF02080 TrkA-C domain 146 209 1.0E-13 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 trd_A0347 295401159391c776a6316d5089ecc530 211 Pfam PF02254 TrkA-N domain 1 115 2.4E-24 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 trd_A0347 295401159391c776a6316d5089ecc530 211 Gene3D G3DSA:3.40.50.720 1 132 1.3E-32 T 13-10-2018 trd_A0347 295401159391c776a6316d5089ecc530 211 SUPERFAMILY SSF116726 127 208 2.88E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 trd_A0347 295401159391c776a6316d5089ecc530 211 SUPERFAMILY SSF51735 1 128 1.64E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0347 295401159391c776a6316d5089ecc530 211 Gene3D G3DSA:3.30.70.1450 133 208 1.0E-19 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 trd_0119 0369f17235f07f7362d8b50b9bec9c1e 394 Gene3D G3DSA:3.40.190.10 83 391 2.3E-113 T 13-10-2018 trd_0119 0369f17235f07f7362d8b50b9bec9c1e 394 SUPERFAMILY SSF53850 78 392 8.4E-64 T 13-10-2018 trd_0119 0369f17235f07f7362d8b50b9bec9c1e 394 Pfam PF13416 Bacterial extracellular solute-binding protein 109 347 2.3E-35 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_0119 0369f17235f07f7362d8b50b9bec9c1e 394 Gene3D G3DSA:3.40.190.10 177 301 2.3E-113 T 13-10-2018 trd_1616 86f0b27528c4a1b3f93004aea222121f 586 Pfam PF05670 Domain of unknown function (DUF814) 474 554 6.9E-20 T 13-10-2018 IPR008532 Domain of unknown function DUF814 trd_1616 86f0b27528c4a1b3f93004aea222121f 586 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 3 458 4.4E-108 T 13-10-2018 trd_1616 86f0b27528c4a1b3f93004aea222121f 586 Gene3D G3DSA:2.30.310.10 1 172 2.2E-46 T 13-10-2018 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 72 268 5.1E-86 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 245 257 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 109 128 1.0E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 242 267 1.0E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 70 89 1.0E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 197 217 1.0E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 89 109 1.0E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 218 239 1.0E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 128 140 9.0E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 140 154 9.0E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 258 268 9.0E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 168 180 9.0E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 68 77 9.0E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 190 202 9.0E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 trd_A0034 278f02bc41e148a2fad031c906c18fb4 271 Pfam PF00813 FliP family 72 264 1.8E-80 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 Pfam PF01546 Peptidase family M20/M25/M40 64 349 4.7E-29 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 TIGRFAM TIGR01902 dapE-lys-deAc: N-acetyl-ornithine/N-acetyl-lysine deacetylase 12 352 2.9E-93 T 13-10-2018 IPR010175 [LysW]-lysine/[LysW]-ornithine hydrolase GO:0005737|GO:0008270|GO:0009085|GO:0016811|GO:0050897 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 Gene3D G3DSA:3.30.70.360 160 266 2.1E-113 T 13-10-2018 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 SUPERFAMILY SSF53187 9 352 3.43E-49 T 13-10-2018 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 Gene3D G3DSA:3.40.630.10 14 340 2.1E-113 T 13-10-2018 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 63 72 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 trd_1520 53b4e980c0f85f2e6d48efce6af43ed1 364 Hamap MF_01120 [LysW]-lysine/[LysW]-ornithine hydrolase [lysK]. 7 352 29.978 T 13-10-2018 IPR010175 [LysW]-lysine/[LysW]-ornithine hydrolase GO:0005737|GO:0008270|GO:0009085|GO:0016811|GO:0050897 trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 4.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 4.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 Gene3D G3DSA:1.10.10.10 7 72 4.1E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 SUPERFAMILY SSF46785 8 76 5.72E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 SMART SM00895 100 222 7.7E-20 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 Pfam PF07729 FCD domain 100 221 3.6E-23 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 SMART SM00345 13 72 9.3E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 6.3E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 SUPERFAMILY SSF48008 99 225 2.22E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0471 c1f6e3102547a58f653a38e2592bd86b 270 Gene3D G3DSA:1.20.120.530 98 228 4.7E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_0307 9eb418bf1e07882682a240cab0ff8448 320 Gene3D G3DSA:3.10.180.10 68 219 7.2E-113 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0307 9eb418bf1e07882682a240cab0ff8448 320 SUPERFAMILY SSF54593 5 305 2.41E-56 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0307 9eb418bf1e07882682a240cab0ff8448 320 Gene3D G3DSA:3.10.180.10 8 314 7.2E-113 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0307 9eb418bf1e07882682a240cab0ff8448 320 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 157 275 3.8E-17 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_0307 9eb418bf1e07882682a240cab0ff8448 320 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 128 3.4E-13 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_1208 9420b76938ed394555626b73f2c9b537 288 Gene3D G3DSA:3.30.43.10 1 53 9.8E-24 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 trd_1208 9420b76938ed394555626b73f2c9b537 288 Gene3D G3DSA:3.30.465.10 57 174 8.1E-41 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_1208 9420b76938ed394555626b73f2c9b537 288 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 281 2.5E-23 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_1208 9420b76938ed394555626b73f2c9b537 288 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 173 4.7E-54 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 trd_1208 9420b76938ed394555626b73f2c9b537 288 SUPERFAMILY SSF56176 1 173 7.01E-58 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_1208 9420b76938ed394555626b73f2c9b537 288 Gene3D G3DSA:3.30.390.50 178 288 2.0E-29 T 13-10-2018 trd_1208 9420b76938ed394555626b73f2c9b537 288 SMART SM01092 180 282 9.5E-29 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_1208 9420b76938ed394555626b73f2c9b537 288 SUPERFAMILY SSF55447 179 284 1.7E-26 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily trd_0414 66b6540988cea09defa17489ec77437d 302 Pfam PF00701 Dihydrodipicolinate synthetase family 2 284 5.3E-84 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0414 66b6540988cea09defa17489ec77437d 302 Gene3D G3DSA:3.20.20.70 1 289 7.3E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0414 66b6540988cea09defa17489ec77437d 302 SMART SM01130 1 288 3.2E-130 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0414 66b6540988cea09defa17489ec77437d 302 SUPERFAMILY SSF51569 1 286 4.71E-98 T 13-10-2018 trd_0414 66b6540988cea09defa17489ec77437d 302 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 trd_0414 66b6540988cea09defa17489ec77437d 302 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 285 1.0E-97 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0414 66b6540988cea09defa17489ec77437d 302 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 62.837 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_0414 66b6540988cea09defa17489ec77437d 302 PIRSF PIRSF001365 1 290 9.4E-88 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0414 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 1.4E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0414 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 1.4E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0414 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 1.4E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0414 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 1.4E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 SUPERFAMILY SSF53187 9 441 8.0E-53 T 13-10-2018 trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 77 86 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 SUPERFAMILY SSF55031 197 342 1.62E-10 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 Pfam PF07687 Peptidase dimerisation domain 193 342 9.6E-16 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 Gene3D G3DSA:3.40.630.10 7 199 6.0E-54 T 13-10-2018 trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 112 151 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 Pfam PF01546 Peptidase family M20/M25/M40 78 438 1.5E-33 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_0281 0e6ec64eca3e5f228d97baee3a95099f 448 Gene3D G3DSA:3.30.70.1640 360 441 3.5E-5 T 13-10-2018 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 Gene3D G3DSA:3.30.2350.10 89 312 1.4E-78 T 13-10-2018 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 SUPERFAMILY SSF55174 22 110 3.03E-12 T 13-10-2018 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 309 5.8E-89 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 Pfam PF00849 RNA pseudouridylate synthase 96 248 7.0E-35 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 SUPERFAMILY SSF55120 80 309 3.5E-78 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 Gene3D G3DSA:3.10.290.10 7 74 1.4E-18 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 Pfam PF01479 S4 domain 22 67 3.5E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_1032 bac96e0a7a608f271d8a4243b671f889 322 SMART SM00363 22 82 3.1E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_1114 7217d24f8cc660787d7bd18d670df0d7 228 SUPERFAMILY SSF53098 27 208 8.44E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_1114 7217d24f8cc660787d7bd18d670df0d7 228 Gene3D G3DSA:3.30.420.10 28 212 1.4E-41 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_1114 7217d24f8cc660787d7bd18d670df0d7 228 SMART SM00479 32 210 6.3E-30 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_1114 7217d24f8cc660787d7bd18d670df0d7 228 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 30 206 5.6E-21 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_1114 7217d24f8cc660787d7bd18d670df0d7 228 Pfam PF00929 Exonuclease 35 199 1.5E-21 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 SUPERFAMILY SSF53223 2 101 8.06E-31 T 13-10-2018 trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 117 190 2.8E-12 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 269 31.709 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 6.5E-26 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 Gene3D G3DSA:3.40.50.720 105 274 1.6E-45 T 13-10-2018 trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 Gene3D G3DSA:3.40.50.10860 1 104 4.4E-35 T 13-10-2018 trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 SUPERFAMILY SSF51735 102 269 5.81E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0871 c1f058e5e3d60e5027250d66daed44c4 279 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 269 5.3E-67 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 Gene3D G3DSA:3.90.1150.10 6 377 1.3E-159 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 Gene3D G3DSA:3.40.640.10 17 260 1.3E-159 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 2 388 48.476 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 Pfam PF00266 Aminotransferase class-V 6 369 5.8E-85 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 SUPERFAMILY SSF53383 6 379 1.71E-113 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 6 385 5.9E-161 T 13-10-2018 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 trd_1634 4ec472d58a011254cbf9eec574ebc1b1 390 PIRSF PIRSF005572 3 385 3.0E-142 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 SUPERFAMILY SSF48150 64 268 9.11E-71 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 SMART SM00525 248 268 0.0027 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 SMART SM00478 99 247 3.9E-43 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 Gene3D G3DSA:1.10.340.30 81 192 9.9E-78 T 13-10-2018 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 ProSitePatterns PS01155 Endonuclease III family signature. 162 191 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 95 226 1.3E-15 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 Gene3D G3DSA:1.10.1670.10 70 267 9.9E-78 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 trd_A0868 7a4591b2b66763867b4490acd036ffed 358 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 249 265 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 trd_0317 1c9acd248074ee15d6fe3a9ebbecde7d 274 Pfam PF00005 ABC transporter 38 175 5.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0317 1c9acd248074ee15d6fe3a9ebbecde7d 274 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0317 1c9acd248074ee15d6fe3a9ebbecde7d 274 SMART SM00382 47 238 4.3E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0317 1c9acd248074ee15d6fe3a9ebbecde7d 274 SUPERFAMILY SSF52540 19 244 5.59E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0317 1c9acd248074ee15d6fe3a9ebbecde7d 274 Gene3D G3DSA:3.40.50.300 16 265 4.5E-65 T 13-10-2018 trd_0205 59465ca220069f50612bdb5a588771e7 745 SMART SM00843 680 745 9.2E-32 T 13-10-2018 IPR018541 FtsK gamma domain trd_0205 59465ca220069f50612bdb5a588771e7 745 SUPERFAMILY SSF52540 366 656 2.24E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0205 59465ca220069f50612bdb5a588771e7 745 SUPERFAMILY SSF46785 681 743 5.44E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0205 59465ca220069f50612bdb5a588771e7 745 Pfam PF01580 FtsK/SpoIIIE family 392 529 6.2E-40 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 trd_0205 59465ca220069f50612bdb5a588771e7 745 SMART SM00382 427 604 0.0021 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0205 59465ca220069f50612bdb5a588771e7 745 Pfam PF09397 Ftsk gamma domain 683 741 1.8E-25 T 13-10-2018 IPR018541 FtsK gamma domain trd_0205 59465ca220069f50612bdb5a588771e7 745 Gene3D G3DSA:3.40.50.300 389 668 1.4E-105 T 13-10-2018 trd_0205 59465ca220069f50612bdb5a588771e7 745 Gene3D G3DSA:3.30.980.40 286 387 4.1E-32 T 13-10-2018 trd_0205 59465ca220069f50612bdb5a588771e7 745 Gene3D G3DSA:1.10.10.10 677 740 2.4E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0205 59465ca220069f50612bdb5a588771e7 745 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 76 190 2.0E-7 T 13-10-2018 IPR025199 DNA translocase FtsK, 4TM region trd_0395 6033420730b93a36d5eca86f4969bc63 336 Gene3D G3DSA:1.10.3720.10 111 327 2.1E-29 T 13-10-2018 IPR035906 MetI-like superfamily trd_0395 6033420730b93a36d5eca86f4969bc63 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 140 335 1.5E-38 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0395 6033420730b93a36d5eca86f4969bc63 336 SUPERFAMILY SSF161098 116 323 1.09E-23 T 13-10-2018 IPR035906 MetI-like superfamily trd_0841 595844b412fdd275e7418cdd6deb9682 499 Pfam PF04932 O-Antigen ligase 269 424 3.0E-20 T 13-10-2018 IPR007016 O-antigen ligase-related trd_A0049 a1268538692e1de32a676d8ab1ecfac3 291 Pfam PF00669 Bacterial flagellin N-terminal helical region 7 138 3.9E-19 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 trd_A0049 a1268538692e1de32a676d8ab1ecfac3 291 Pfam PF00700 Bacterial flagellin C-terminal helical region 208 290 9.4E-9 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 trd_A0049 a1268538692e1de32a676d8ab1ecfac3 291 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 180 1.3E-54 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 trd_A0049 a1268538692e1de32a676d8ab1ecfac3 291 SUPERFAMILY SSF64518 1 291 5.62E-62 T 13-10-2018 trd_A0049 a1268538692e1de32a676d8ab1ecfac3 291 Gene3D G3DSA:1.20.1330.10 40 236 7.3E-50 T 13-10-2018 trd_0417 722f046f38c662dc1f856db55f59c10b 241 Pfam PF03483 B3/4 domain 65 199 4.1E-16 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 trd_0417 722f046f38c662dc1f856db55f59c10b 241 SUPERFAMILY SSF56037 56 228 8.63E-25 T 13-10-2018 trd_0417 722f046f38c662dc1f856db55f59c10b 241 SMART SM00873 63 217 1.3E-6 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 trd_1266 842924240b327c3a8a142048b66eaee2 850 Gene3D G3DSA:3.40.50.300 1 254 2.3E-41 T 13-10-2018 trd_1266 842924240b327c3a8a142048b66eaee2 850 SUPERFAMILY SSF52540 617 845 4.46E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1266 842924240b327c3a8a142048b66eaee2 850 SUPERFAMILY SSF52540 1 257 3.58E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1266 842924240b327c3a8a142048b66eaee2 850 Pfam PF13558 Putative exonuclease SbcCD, C subunit 752 809 2.8E-6 T 13-10-2018 trd_1266 842924240b327c3a8a142048b66eaee2 850 Gene3D G3DSA:1.10.287.510 372 485 1.1E-7 T 13-10-2018 trd_1266 842924240b327c3a8a142048b66eaee2 850 Gene3D G3DSA:3.40.50.300 612 850 9.9E-35 T 13-10-2018 trd_1266 842924240b327c3a8a142048b66eaee2 850 Pfam PF04423 Rad50 zinc hook motif 403 437 2.2E-5 T 13-10-2018 IPR013134 RAD50, zinc hook Reactome: R-HSA-2559586|Reactome: R-HSA-5685938|Reactome: R-HSA-5685939|Reactome: R-HSA-5685942|Reactome: R-HSA-5693548|Reactome: R-HSA-5693554|Reactome: R-HSA-5693565|Reactome: R-HSA-5693568|Reactome: R-HSA-5693571|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.3E-31 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.3E-31 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 116 138 2.3E-31 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 89 105 2.3E-31 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 Pfam PF01467 Cytidylyltransferase-like 6 137 6.9E-20 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 161 8.1E-56 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 Gene3D G3DSA:3.40.50.620 1 163 8.6E-54 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 SUPERFAMILY SSF52374 3 160 4.02E-43 T 13-10-2018 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 162 33.624 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 trd_0097 f25a560fd3a18137f0a5607f24a5bc20 167 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 66 1.8E-16 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 Gene3D G3DSA:3.30.930.10 6 212 1.7E-75 T 13-10-2018 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 30 211 2.1E-47 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 Hamap MF_00013 Octanoyltransferase [lipB]. 5 214 34.757 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 Pfam PF03099 Biotin/lipoate A/B protein ligase family 63 166 1.4E-5 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 PIRSF PIRSF016262 4 224 2.3E-61 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 78 93 - T 13-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 SUPERFAMILY SSF55681 6 214 3.69E-64 T 13-10-2018 trd_0170 5e06d56ebbf3358472cdaffa0e919e05 247 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 82 135 4.0E-8 T 13-10-2018 trd_0378 894da1981c63c72468da6f7bd9af1671 419 SUPERFAMILY SSF53383 11 412 1.46E-129 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0378 894da1981c63c72468da6f7bd9af1671 419 Gene3D G3DSA:3.90.1150.10 15 408 7.7E-175 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0378 894da1981c63c72468da6f7bd9af1671 419 Pfam PF00266 Aminotransferase class-V 33 404 1.0E-144 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_0378 894da1981c63c72468da6f7bd9af1671 419 Gene3D G3DSA:3.40.640.10 44 305 7.7E-175 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0378 894da1981c63c72468da6f7bd9af1671 419 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 14 416 4.6E-174 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 PIRSF PIRSF039137 1 237 8.6E-111 T 13-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 217 235 2.1E-5 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 Pfam PF00005 ABC transporter 19 164 1.3E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 SMART SM00382 28 215 3.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 Gene3D G3DSA:3.40.50.300 2 237 1.7E-67 T 13-10-2018 trd_A0638 5808831e8992aaa6940ac2639d5e145c 237 SUPERFAMILY SSF52540 3 235 1.78E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1726 b55f706133872e005a090fac5910248c 285 SUPERFAMILY SSF89550 4 249 9.03E-44 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_1726 b55f706133872e005a090fac5910248c 285 Gene3D G3DSA:3.20.20.140 4 245 5.2E-83 T 13-10-2018 trd_1726 b55f706133872e005a090fac5910248c 285 Gene3D G3DSA:1.10.150.650 97 168 5.2E-83 T 13-10-2018 trd_1726 b55f706133872e005a090fac5910248c 285 Pfam PF02811 PHP domain 5 131 1.2E-10 T 13-10-2018 IPR004013 PHP domain GO:0003824 trd_1726 b55f706133872e005a090fac5910248c 285 SMART SM00481 4 69 2.9E-22 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal trd_A0635 3ff5347deb968abed082d2d1d85db16c 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 338 9.7E-48 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_1061 8431f749860bdfe50b87ba10911c42c8 392 SUPERFAMILY SSF46548 134 252 4.71E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_1061 8431f749860bdfe50b87ba10911c42c8 392 Pfam PF08331 Domain of unknown function (DUF1730) 60 135 9.6E-20 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 trd_1061 8431f749860bdfe50b87ba10911c42c8 392 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1061 8431f749860bdfe50b87ba10911c42c8 392 Pfam PF13646 HEAT repeats 302 372 7.9E-10 T 13-10-2018 trd_1061 8431f749860bdfe50b87ba10911c42c8 392 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 9 344 1.1E-97 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 trd_1061 8431f749860bdfe50b87ba10911c42c8 392 Gene3D G3DSA:1.25.10.10 290 384 1.1E-8 T 13-10-2018 IPR011989 Armadillo-like helical trd_1061 8431f749860bdfe50b87ba10911c42c8 392 Pfam PF13484 4Fe-4S double cluster binding domain 187 250 2.9E-18 T 13-10-2018 trd_1061 8431f749860bdfe50b87ba10911c42c8 392 SUPERFAMILY SSF48371 298 374 1.31E-8 T 13-10-2018 IPR016024 Armadillo-type fold trd_0403 c4c0088a0a84f9079dc97e4e206cd008 119 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 12 94 1.3E-22 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 trd_0403 c4c0088a0a84f9079dc97e4e206cd008 119 Gene3D G3DSA:1.10.10.10 9 118 2.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0403 c4c0088a0a84f9079dc97e4e206cd008 119 SUPERFAMILY SSF46767 11 96 1.96E-21 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 PRINTS PR01009 Flagellar M-ring protein signature 121 139 1.4E-37 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 PRINTS PR01009 Flagellar M-ring protein signature 341 365 1.4E-37 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 PRINTS PR01009 Flagellar M-ring protein signature 266 284 1.4E-37 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 PRINTS PR01009 Flagellar M-ring protein signature 196 214 1.4E-37 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 PRINTS PR01009 Flagellar M-ring protein signature 153 167 1.4E-37 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 Gene3D G3DSA:3.30.300.30 122 219 1.1E-15 T 13-10-2018 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 Pfam PF08345 Flagellar M-ring protein C-terminal 255 405 1.3E-38 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 PIRSF PIRSF004862 1 530 7.0E-147 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 10 529 3.2E-103 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 trd_A0651 d1d3beb64bcf65b44633d61f2e94867b 530 Pfam PF01514 Secretory protein of YscJ/FliF family 33 219 1.1E-76 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 SUPERFAMILY SSF52172 7 191 4.41E-60 T 13-10-2018 IPR011006 CheY-like superfamily trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 Pfam PF03861 ANTAR domain 139 191 6.4E-23 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 Gene3D G3DSA:3.40.50.2300 1 137 9.9E-40 T 13-10-2018 trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 PIRSF PIRSF036382 2 198 6.6E-69 T 13-10-2018 IPR008327 Signal transduction response regulator, antiterminator trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 Gene3D G3DSA:1.10.10.10 138 199 4.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 Pfam PF00072 Response regulator receiver domain 11 120 1.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 SMART SM00448 9 120 2.7E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_0686 c34a66d3d12e9d486eaf5574bcc1fbfb 207 SMART SM01012 136 191 2.8E-25 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 trd_A0461 460f8768b5734f677a92fd92b4f66fde 494 PIRSF PIRSF001221 446 480 0.089 T 13-10-2018 trd_A0461 460f8768b5734f677a92fd92b4f66fde 494 PIRSF PIRSF001221 2 403 9.7E-44 T 13-10-2018 trd_A0461 460f8768b5734f677a92fd92b4f66fde 494 SUPERFAMILY SSF75304 5 479 8.24E-127 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_A0461 460f8768b5734f677a92fd92b4f66fde 494 ProSitePatterns PS00571 Amidases signature. 158 189 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 trd_A0461 460f8768b5734f677a92fd92b4f66fde 494 Gene3D G3DSA:3.90.1300.10 2 494 9.3E-180 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_A0461 460f8768b5734f677a92fd92b4f66fde 494 Pfam PF01425 Amidase 28 470 4.2E-101 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 Pfam PF00120 Glutamine synthetase, catalytic domain 108 426 2.3E-97 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 SUPERFAMILY SSF55931 108 428 4.91E-104 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 Gene3D G3DSA:3.30.590.10 107 428 1.6E-108 T 13-10-2018 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 SUPERFAMILY SSF54368 5 101 1.7E-12 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 231 246 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 SMART SM01230 107 354 2.9E-104 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0665 2dfe81ecd40e0a97f5ff01ef87d28f9c 449 Gene3D G3DSA:3.10.20.70 2 106 2.5E-9 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1826 570cd761a2207aad443e34fa04cd2b24 91 SUPERFAMILY SSF54909 1 86 6.97E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_1826 570cd761a2207aad443e34fa04cd2b24 91 Pfam PF03795 YCII-related domain 5 83 1.4E-14 T 13-10-2018 IPR005545 YCII-related trd_1826 570cd761a2207aad443e34fa04cd2b24 91 Gene3D G3DSA:3.30.70.1060 2 86 6.8E-15 T 13-10-2018 trd_A0084 2f91d46ac1d4f2382567eb5e4db91356 289 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 277 2.9E-42 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 Pfam PF00364 Biotin-requiring enzyme 109 179 4.6E-13 T 13-10-2018 IPR000089 Biotin/lipoyl attachment trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 143 156 2.7E-9 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 111 124 2.7E-9 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 128 142 2.7E-9 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 138 155 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 SUPERFAMILY SSF51230 107 181 4.97E-17 T 13-10-2018 IPR011053 Single hybrid motif trd_1682 0bef2d9e74f6abdc3e90d6913e2c8e27 196 Gene3D G3DSA:2.40.50.100 106 181 2.3E-21 T 13-10-2018 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 SUPERFAMILY SSF52402 7 170 5.07E-48 T 13-10-2018 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 SUPERFAMILY SSF69864 175 401 3.4E-96 T 13-10-2018 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 Gene3D G3DSA:3.90.1260.10 67 357 6.5E-161 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 396 2.5E-159 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 Gene3D G3DSA:1.20.5.470 377 403 1.1E-10 T 13-10-2018 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 Gene3D G3DSA:3.40.50.620 9 176 6.5E-161 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 401 55.6 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 120 131 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_A0866 9f70c35952edbee9269f69cc0f3fd1f8 407 Pfam PF00764 Arginosuccinate synthase 10 396 5.1E-166 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_0409 0ce9198bb43b5454938bc42121a09efc 206 Gene3D G3DSA:3.40.30.10 39 206 8.1E-53 T 13-10-2018 trd_0409 0ce9198bb43b5454938bc42121a09efc 206 Pfam PF02630 SCO1/SenC 51 183 4.5E-34 T 13-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0409 0ce9198bb43b5454938bc42121a09efc 206 SUPERFAMILY SSF52833 45 204 1.19E-50 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0188 8745757e42763f5dffda74308a660e32 354 Hamap MF_00268 Protein RecA [recA]. 3 328 52.451 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 ProSitePatterns PS00321 recA signature. 212 220 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 trd_0188 8745757e42763f5dffda74308a660e32 354 Pfam PF00154 recA bacterial DNA recombination protein 5 267 1.7E-143 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 SUPERFAMILY SSF54752 268 324 4.06E-19 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal trd_0188 8745757e42763f5dffda74308a660e32 354 Gene3D G3DSA:3.30.250.10 267 325 1.1E-24 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal trd_0188 8745757e42763f5dffda74308a660e32 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 2 323 4.0E-174 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 209 237 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 126 155 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 92 121 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 164 193 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 296 313 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 242 271 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_0188 8745757e42763f5dffda74308a660e32 354 SMART SM00382 56 227 9.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0188 8745757e42763f5dffda74308a660e32 354 Gene3D G3DSA:3.40.50.300 24 266 1.7E-86 T 13-10-2018 trd_0188 8745757e42763f5dffda74308a660e32 354 SUPERFAMILY SSF52540 4 266 1.05E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0616 45891ea4d13842610a38ee526b3fb757 143 Pfam PF07811 TadE-like protein 10 51 2.8E-12 T 13-10-2018 IPR012495 TadE-like trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 SMART SM00304 195 247 2.9E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 Gene3D G3DSA:1.20.1480.50 167 253 6.9E-14 T 13-10-2018 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 Pfam PF00672 HAMP domain 195 244 3.7E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 473 1.5E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 5.1E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 5.1E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 5.1E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 471 5.1E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 SMART SM00387 360 474 1.1E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 SUPERFAMILY SSF47384 231 316 5.89E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 249 315 2.3E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 Gene3D G3DSA:1.10.287.130 254 315 2.2E-17 T 13-10-2018 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 Gene3D G3DSA:3.30.565.10 316 474 1.2E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 SUPERFAMILY SSF158472 195 245 1.14E-10 T 13-10-2018 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 SMART SM00388 248 315 1.0E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 trd_1274 44f89d89e42f5a85ee30b6acb216c2cc 477 SUPERFAMILY SSF55874 305 471 4.19E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1668 2f80658643950e842b02ba80fa300caf 575 SMART SM01340 208 327 5.8E-47 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 trd_1668 2f80658643950e842b02ba80fa300caf 575 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 210 326 4.2E-32 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 trd_1668 2f80658643950e842b02ba80fa300caf 575 SMART SM00853 393 532 1.0E-41 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 trd_1668 2f80658643950e842b02ba80fa300caf 575 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 2 307 6.9E-89 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 trd_1668 2f80658643950e842b02ba80fa300caf 575 Gene3D G3DSA:3.30.1370.100 435 529 5.5E-58 T 13-10-2018 trd_1668 2f80658643950e842b02ba80fa300caf 575 SUPERFAMILY SSF55874 2 213 9.43E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1668 2f80658643950e842b02ba80fa300caf 575 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 572 25.199 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 trd_1668 2f80658643950e842b02ba80fa300caf 575 Pfam PF08676 MutL C terminal dimerisation domain 390 532 8.4E-41 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 trd_1668 2f80658643950e842b02ba80fa300caf 575 Gene3D G3DSA:3.30.565.10 1 202 2.2E-62 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1668 2f80658643950e842b02ba80fa300caf 575 SUPERFAMILY SSF118116 389 574 8.24E-51 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily trd_1668 2f80658643950e842b02ba80fa300caf 575 Gene3D G3DSA:2.30.42.20 394 574 5.5E-58 T 13-10-2018 trd_1668 2f80658643950e842b02ba80fa300caf 575 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site trd_1668 2f80658643950e842b02ba80fa300caf 575 SUPERFAMILY SSF54211 190 326 4.55E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1668 2f80658643950e842b02ba80fa300caf 575 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 117 1.0E-10 T 13-10-2018 trd_1668 2f80658643950e842b02ba80fa300caf 575 Gene3D G3DSA:3.30.230.10 213 326 5.0E-30 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_0758 2047abed623b0e4d2805361dc9c2922f 159 SMART SM00834 1 44 6.8E-11 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_0758 2047abed623b0e4d2805361dc9c2922f 159 Pfam PF09723 Zinc ribbon domain 1 42 7.3E-13 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_0758 2047abed623b0e4d2805361dc9c2922f 159 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 48 3.8E-14 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_A0784 56bd63fe69b22e567ace497928edaa32 301 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 8 267 1.4E-95 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 trd_A0784 56bd63fe69b22e567ace497928edaa32 301 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 6 267 43.425 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 trd_A0784 56bd63fe69b22e567ace497928edaa32 301 SUPERFAMILY SSF51621 5 267 2.47E-104 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_A0784 56bd63fe69b22e567ace497928edaa32 301 PIRSF PIRSF000388 1 270 5.6E-106 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 trd_A0784 56bd63fe69b22e567ace497928edaa32 301 Gene3D G3DSA:3.20.20.60 4 274 4.2E-116 T 13-10-2018 trd_A0784 56bd63fe69b22e567ace497928edaa32 301 Pfam PF02548 Ketopantoate hydroxymethyltransferase 5 263 2.1E-111 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 trd_A0593 26c779b0c22280232bf635f2c67b1e08 357 Pfam PF13407 Periplasmic binding protein domain 80 332 9.0E-60 T 13-10-2018 IPR025997 Periplasmic binding protein trd_A0593 26c779b0c22280232bf635f2c67b1e08 357 Gene3D G3DSA:3.40.50.2300 86 344 2.4E-90 T 13-10-2018 trd_A0593 26c779b0c22280232bf635f2c67b1e08 357 SUPERFAMILY SSF53822 73 354 8.34E-68 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_A0593 26c779b0c22280232bf635f2c67b1e08 357 Gene3D G3DSA:3.40.50.2300 178 352 2.4E-90 T 13-10-2018 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 PIRSF PIRSF001456 2 355 2.1E-146 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 ProSitePatterns PS00789 Chorismate synthase signature 3. 322 338 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 TIGRFAM TIGR00033 aroC: chorismate synthase 9 352 1.6E-143 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 ProSitePatterns PS00787 Chorismate synthase signature 1. 15 30 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 SUPERFAMILY SSF103263 3 352 2.62E-143 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 Hamap MF_00300 Chorismate synthase [aroC]. 9 355 38.261 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 Pfam PF01264 Chorismate synthase 9 348 2.9E-140 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 ProSitePatterns PS00788 Chorismate synthase signature 2. 123 139 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_0234 01a1031a0bb8a2a72f2e82df971dcafd 355 Gene3D G3DSA:3.60.150.10 1 355 2.3E-153 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 trd_1630 d7a0a544040f66d7897acfd852da2335 344 Pfam PF00005 ABC transporter 49 199 6.1E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1630 d7a0a544040f66d7897acfd852da2335 344 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 251 318 1.2E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1630 d7a0a544040f66d7897acfd852da2335 344 Gene3D G3DSA:3.40.50.300 18 342 2.1E-105 T 13-10-2018 trd_1630 d7a0a544040f66d7897acfd852da2335 344 SMART SM00382 57 249 1.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1630 d7a0a544040f66d7897acfd852da2335 344 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 249 338 9.6E-29 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1630 d7a0a544040f66d7897acfd852da2335 344 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1630 d7a0a544040f66d7897acfd852da2335 344 SUPERFAMILY SSF52540 20 271 1.85E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1715 0eb000eeb041d4c924dd523b290a3666 655 SUPERFAMILY SSF52540 16 286 2.49E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Pfam PF00005 ABC transporter 39 211 8.3E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Gene3D G3DSA:3.40.50.300 309 559 1.3E-55 T 13-10-2018 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Pfam PF12848 ABC transporter 250 326 4.2E-22 T 13-10-2018 IPR032781 ABC-transporter extension domain trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Gene3D G3DSA:3.40.50.300 20 305 4.6E-75 T 13-10-2018 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Pfam PF00005 ABC transporter 364 488 9.0E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 ProSitePatterns PS00211 ABC transporters family signature. 460 474 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 SUPERFAMILY SSF52540 340 550 1.28E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Gene3D G3DSA:1.10.287.380 581 647 3.1E-6 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 Pfam PF16326 ABC transporter C-terminal domain 583 645 2.3E-11 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 ProSitePatterns PS00211 ABC transporters family signature. 183 197 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1715 0eb000eeb041d4c924dd523b290a3666 655 SMART SM00382 369 542 3.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1715 0eb000eeb041d4c924dd523b290a3666 655 SMART SM00382 47 258 5.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0064 bbebdcda027538701c40e9faec94a9c7 319 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 319 84.674 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 Gene3D G3DSA:3.90.78.10 236 319 3.5E-34 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 Gene3D G3DSA:3.30.43.10 15 91 1.2E-25 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 SUPERFAMILY SSF56176 27 222 1.78E-34 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 Gene3D G3DSA:3.30.465.10 105 234 3.6E-25 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 Pfam PF01565 FAD binding domain 41 178 4.0E-16 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 228 316 1.3E-28 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 28 317 1.3E-67 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0064 bbebdcda027538701c40e9faec94a9c7 319 SUPERFAMILY SSF56194 215 318 2.22E-33 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 SUPERFAMILY SSF52540 112 314 9.49E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1819 e19bdc073deed18eed0134e76e5c6915 320 Gene3D G3DSA:1.20.120.140 16 313 2.9E-109 T 13-10-2018 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 288 301 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 40 315 60.274 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 41 314 4.9E-107 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 Pfam PF00448 SRP54-type protein, GTPase domain 115 314 1.2E-76 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 Pfam PF02881 SRP54-type protein, helical bundle domain 31 93 7.4E-11 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 SUPERFAMILY SSF47364 16 91 4.19E-18 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 Gene3D G3DSA:3.40.50.300 101 303 2.9E-109 T 13-10-2018 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 SMART SM00382 113 265 2.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1819 e19bdc073deed18eed0134e76e5c6915 320 SMART SM00963 17 97 1.0E-18 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_1819 e19bdc073deed18eed0134e76e5c6915 320 SMART SM00962 114 315 8.7E-114 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_0509 8362c4215a513831bcb5f4f2e3dad638 687 SUPERFAMILY SSF52833 1 127 6.26E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0509 8362c4215a513831bcb5f4f2e3dad638 687 PIRSF PIRSF006402 1 684 1.4E-240 T 13-10-2018 IPR024705 Spermatogenesis-associated protein 20 trd_0509 8362c4215a513831bcb5f4f2e3dad638 687 SUPERFAMILY SSF48208 174 537 3.13E-79 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 trd_0509 8362c4215a513831bcb5f4f2e3dad638 687 Gene3D G3DSA:1.50.10.10 394 594 4.2E-8 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 trd_0509 8362c4215a513831bcb5f4f2e3dad638 687 Gene3D G3DSA:3.40.30.10 1 169 1.5E-69 T 13-10-2018 trd_0509 8362c4215a513831bcb5f4f2e3dad638 687 Pfam PF03190 Protein of unknown function, DUF255 3 163 2.1E-74 T 13-10-2018 IPR004879 Domain of unknown function DUF255 trd_0640 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF55681 473 711 4.22E-36 T 13-10-2018 trd_0640 61398111b736a1dd72dc2f6083543125 817 SMART SM00896 723 816 1.9E-32 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.50.40.10 199 399 6.3E-78 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 816 9.0E-214 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 Pfam PF03147 Ferredoxin-fold anticodon binding domain 723 816 3.5E-23 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.70.380 725 816 3.0E-24 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF46955 405 481 8.33E-17 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_0640 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.930.10 495 711 1.8E-50 T 13-10-2018 trd_0640 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF54991 719 816 1.83E-23 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.56.10 405 481 1.1E-19 T 13-10-2018 trd_0640 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.56.10 5 185 2.5E-66 T 13-10-2018 trd_0640 61398111b736a1dd72dc2f6083543125 817 Pfam PF03483 B3/4 domain 216 385 7.3E-63 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF56037 208 384 8.37E-66 T 13-10-2018 trd_0640 61398111b736a1dd72dc2f6083543125 817 SMART SM00873 215 388 1.3E-81 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:2.40.50.140 39 158 2.5E-66 T 13-10-2018 trd_0640 61398111b736a1dd72dc2f6083543125 817 Pfam PF03484 tRNA synthetase B5 domain 409 477 9.9E-16 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 trd_0640 61398111b736a1dd72dc2f6083543125 817 Pfam PF01588 Putative tRNA binding domain 45 151 3.0E-19 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 trd_0640 61398111b736a1dd72dc2f6083543125 817 SMART SM00874 405 477 1.5E-24 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 trd_0640 61398111b736a1dd72dc2f6083543125 817 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 810 39.852 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 trd_0640 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF50249 35 202 9.43E-40 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0807 8a5d623af313fbeaf24e3014d9b0a1a5 239 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 42 219 32.998 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 trd_0807 8a5d623af313fbeaf24e3014d9b0a1a5 239 Pfam PF01195 Peptidyl-tRNA hydrolase 44 226 5.9E-53 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 trd_0807 8a5d623af313fbeaf24e3014d9b0a1a5 239 Gene3D G3DSA:3.40.50.1470 27 229 3.5E-66 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 trd_0807 8a5d623af313fbeaf24e3014d9b0a1a5 239 SUPERFAMILY SSF53178 42 226 1.83E-62 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 trd_0807 8a5d623af313fbeaf24e3014d9b0a1a5 239 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 44 226 1.9E-57 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 trd_0807 8a5d623af313fbeaf24e3014d9b0a1a5 239 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 55 68 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 trd_0084 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:3.40.50.300 567 739 4.5E-63 T 13-10-2018 trd_0084 ee290a319cb6491c6b638498421eef67 807 SMART SM00490 615 699 2.5E-20 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0084 ee290a319cb6491c6b638498421eef67 807 Pfam PF17191 RecG wedge domain 126 286 6.9E-22 T 13-10-2018 IPR033454 RecG, wedge domain trd_0084 ee290a319cb6491c6b638498421eef67 807 SUPERFAMILY SSF50249 118 291 7.2E-37 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0084 ee290a319cb6491c6b638498421eef67 807 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 140 772 1.2E-216 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 trd_0084 ee290a319cb6491c6b638498421eef67 807 Pfam PF00271 Helicase conserved C-terminal domain 582 698 1.4E-17 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0084 ee290a319cb6491c6b638498421eef67 807 SUPERFAMILY SSF52540 562 760 1.81E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0084 ee290a319cb6491c6b638498421eef67 807 SMART SM00487 375 569 1.2E-32 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_0084 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:2.40.50.140 166 260 2.3E-16 T 13-10-2018 trd_0084 ee290a319cb6491c6b638498421eef67 807 SUPERFAMILY SSF52540 296 563 1.14E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0084 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:3.40.50.300 322 560 7.1E-86 T 13-10-2018 trd_0084 ee290a319cb6491c6b638498421eef67 807 Pfam PF00270 DEAD/DEAH box helicase 382 541 1.1E-14 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_A0364 887651a17ef0217abd94817da2cd0a04 406 Gene3D G3DSA:1.20.1250.20 12 400 2.8E-54 T 13-10-2018 trd_A0364 887651a17ef0217abd94817da2cd0a04 406 Pfam PF07690 Major Facilitator Superfamily 21 211 2.0E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0364 887651a17ef0217abd94817da2cd0a04 406 Pfam PF07690 Major Facilitator Superfamily 218 402 3.1E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0364 887651a17ef0217abd94817da2cd0a04 406 SUPERFAMILY SSF103473 13 394 5.49E-58 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1098 4164ffe6766094043974d6d355f7f0c4 245 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 195 205 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 Gene3D G3DSA:3.40.50.1860 108 218 1.4E-79 T 13-10-2018 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 Gene3D G3DSA:3.40.50.1860 7 224 1.4E-79 T 13-10-2018 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 SUPERFAMILY SSF53681 6 114 2.03E-33 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 TIGRFAM TIGR00035 asp_race: aspartate racemase 5 234 1.5E-60 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 SUPERFAMILY SSF53681 123 230 1.96E-24 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 226 7.2E-62 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_1098 4164ffe6766094043974d6d355f7f0c4 245 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 82 90 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_1685 c029b06c844d1f4323fcdabfe12b9c13 443 Gene3D G3DSA:3.30.300.30 339 442 2.4E-19 T 13-10-2018 trd_1685 c029b06c844d1f4323fcdabfe12b9c13 443 Pfam PF14535 AMP-binding enzyme C-terminal domain 347 436 5.1E-6 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal trd_1685 c029b06c844d1f4323fcdabfe12b9c13 443 Gene3D G3DSA:3.40.50.12780 1 338 6.8E-90 T 13-10-2018 trd_1685 c029b06c844d1f4323fcdabfe12b9c13 443 Pfam PF00501 AMP-binding enzyme 86 289 6.0E-9 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_1685 c029b06c844d1f4323fcdabfe12b9c13 443 SUPERFAMILY SSF56801 27 438 3.27E-36 T 13-10-2018 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 Pfam PF07497 Rho termination factor, RNA-binding domain 71 142 4.1E-34 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 SMART SM00959 24 66 8.5E-13 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 SMART SM00357 71 135 3.6E-16 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 174 377 8.7E-22 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 TIGRFAM TIGR00767 rho: transcription termination factor Rho 22 431 2.6E-195 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 SUPERFAMILY SSF52540 107 385 1.15E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 433 212.838 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 Gene3D G3DSA:2.40.50.140 19 146 5.9E-49 T 13-10-2018 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 Pfam PF07498 Rho termination factor, N-terminal domain 24 66 9.0E-13 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 SUPERFAMILY SSF68912 21 65 1.02E-8 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 Gene3D G3DSA:3.40.50.300 148 431 1.8E-125 T 13-10-2018 trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 SUPERFAMILY SSF50249 68 142 3.39E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0337 e33ab3e0d88ecd0dcf5672984330f431 434 SMART SM00382 184 369 2.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0284 555dd915a9cee30dfd3326f389eef670 152 SMART SM00271 11 72 6.4E-23 T 13-10-2018 IPR001623 DnaJ domain trd_0284 555dd915a9cee30dfd3326f389eef670 152 Pfam PF00226 DnaJ domain 12 77 2.8E-21 T 13-10-2018 IPR001623 DnaJ domain trd_0284 555dd915a9cee30dfd3326f389eef670 152 PRINTS PR00625 DnaJ domain signature 14 32 4.2E-13 T 13-10-2018 IPR001623 DnaJ domain trd_0284 555dd915a9cee30dfd3326f389eef670 152 PRINTS PR00625 DnaJ domain signature 32 47 4.2E-13 T 13-10-2018 IPR001623 DnaJ domain trd_0284 555dd915a9cee30dfd3326f389eef670 152 PRINTS PR00625 DnaJ domain signature 52 72 4.2E-13 T 13-10-2018 IPR001623 DnaJ domain trd_0284 555dd915a9cee30dfd3326f389eef670 152 SUPERFAMILY SSF46565 10 76 1.83E-25 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_0284 555dd915a9cee30dfd3326f389eef670 152 Gene3D G3DSA:1.10.287.110 5 93 4.2E-26 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 SMART SM00464 13 200 5.1E-19 T 13-10-2018 IPR003111 Lon, substrate-binding domain trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:1.20.58.1480 124 206 1.1E-10 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 SMART SM00382 337 485 2.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 SUPERFAMILY SSF54211 589 764 4.55E-48 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 SUPERFAMILY SSF88697 15 199 6.71E-25 T 13-10-2018 IPR015947 PUA-like superfamily trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:1.10.8.60 480 578 1.6E-27 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:3.30.230.10 580 766 7.8E-64 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:3.40.50.300 300 479 7.2E-62 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 564 765 3.0E-68 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 14 199 3.9E-19 T 13-10-2018 IPR003111 Lon, substrate-binding domain trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 SUPERFAMILY SSF52540 295 569 4.36E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PIRSF PIRSF001174 2 210 1.1E-17 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PIRSF PIRSF001174 220 769 5.4E-210 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 341 479 7.7E-22 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 TIGRFAM TIGR00763 lon: endopeptidase La 232 765 2.3E-208 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 589 605 1.2E-39 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 667 686 1.2E-39 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 697 716 1.2E-39 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 720 738 1.2E-39 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 345 364 1.2E-39 T 13-10-2018 trd_1562 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:2.30.130.40 4 117 1.4E-17 T 13-10-2018 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 399 2.4E-22 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 trd_0063 a1a364f283cc307f35e727f0528724c8 462 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 16 449 1.0E-125 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Pfam PF01225 Mur ligase family, catalytic domain 16 114 4.0E-23 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Gene3D G3DSA:3.40.50.720 15 101 2.1E-26 T 13-10-2018 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 13 458 34.585 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Gene3D G3DSA:3.40.1190.10 102 310 1.1E-59 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Gene3D G3DSA:3.90.190.20 311 459 3.4E-51 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0063 a1a364f283cc307f35e727f0528724c8 462 Pfam PF08245 Mur ligase middle domain 118 293 2.3E-23 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_0063 a1a364f283cc307f35e727f0528724c8 462 SUPERFAMILY SSF53244 312 453 3.36E-44 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0063 a1a364f283cc307f35e727f0528724c8 462 SUPERFAMILY SSF51984 15 100 1.96E-23 T 13-10-2018 trd_0063 a1a364f283cc307f35e727f0528724c8 462 SUPERFAMILY SSF53623 102 310 1.11E-49 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 Gene3D G3DSA:1.20.140.10 275 481 2.0E-63 T 13-10-2018 trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 PIRSF PIRSF000331 1 486 5.8E-152 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 SUPERFAMILY SSF56645 4 269 7.72E-85 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 Gene3D G3DSA:1.10.3140.10 2 141 7.2E-50 T 13-10-2018 trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 SUPERFAMILY SSF47203 260 476 1.99E-50 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 Gene3D G3DSA:2.40.110.10 142 270 3.1E-49 T 13-10-2018 trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 280 475 1.3E-59 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal trd_A0931 3e2ecfe3bf233aa3efbec4f58d6f36f8 492 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 5 269 2.3E-101 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 SUPERFAMILY SSF89447 2 128 3.58E-46 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 138 2.9E-40 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Gene3D G3DSA:2.40.330.20 1 140 1.7E-48 T 13-10-2018 IPR038619 MraZ superfamily trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 120 1.0E-33 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Pfam PF02381 MraZ protein, putative antitoxin-like 2 70 2.6E-18 T 13-10-2018 IPR020603 MraZ domain trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Pfam PF02381 MraZ protein, putative antitoxin-like 73 130 1.1E-17 T 13-10-2018 IPR020603 MraZ domain trd_0055 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 142 49.122 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 trd_0002 a8d79ef3c7db4a466c79a0888b2ec308 350 SUPERFAMILY SSF52540 18 221 3.79E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0002 a8d79ef3c7db4a466c79a0888b2ec308 350 Pfam PF13177 DNA polymerase III, delta subunit 21 184 1.1E-50 T 13-10-2018 trd_0002 a8d79ef3c7db4a466c79a0888b2ec308 350 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 26 214 4.3E-59 T 13-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0002 a8d79ef3c7db4a466c79a0888b2ec308 350 Gene3D G3DSA:3.40.50.300 11 182 1.0E-58 T 13-10-2018 trd_0470 fb81c720e4a1c571cc2e4bd2aa85338f 177 SUPERFAMILY SSF48695 12 166 1.25E-27 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily trd_0470 fb81c720e4a1c571cc2e4bd2aa85338f 177 Pfam PF02085 Class III cytochrome C family 38 92 2.7E-5 T 13-10-2018 IPR020942 Class III cytochrome C GO:0009055|GO:0020037 trd_0470 fb81c720e4a1c571cc2e4bd2aa85338f 177 Gene3D G3DSA:3.90.10.10 112 177 1.2E-10 T 13-10-2018 trd_0470 fb81c720e4a1c571cc2e4bd2aa85338f 177 Gene3D G3DSA:3.90.10.10 19 111 9.0E-10 T 13-10-2018 trd_0470 fb81c720e4a1c571cc2e4bd2aa85338f 177 Pfam PF14522 Cytochrome c7 and related cytochrome c 120 177 4.8E-6 T 13-10-2018 IPR029467 C-type polyheme cytochrome OmcB trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Gene3D G3DSA:3.40.50.970 1 173 1.9E-54 T 13-10-2018 trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Gene3D G3DSA:3.40.50.1220 186 358 4.7E-49 T 13-10-2018 trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 400 540 5.4E-30 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 SUPERFAMILY SSF52518 364 552 3.4E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 189 324 2.1E-35 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 SUPERFAMILY SSF52518 1 177 8.84E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Gene3D G3DSA:3.40.50.970 359 557 1.1E-49 T 13-10-2018 trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 1.7E-46 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_0894 8a8bf7256ea121aca2a2fa137a9e4a7e 558 SUPERFAMILY SSF52467 154 349 1.08E-47 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_A0597 6212fb9f5ecafa4b50c8e60b683d7fea 431 Pfam PF01966 HD domain 57 180 7.3E-15 T 13-10-2018 IPR006674 HD domain trd_A0597 6212fb9f5ecafa4b50c8e60b683d7fea 431 Gene3D G3DSA:1.10.3210.10 8 296 2.0E-72 T 13-10-2018 trd_A0597 6212fb9f5ecafa4b50c8e60b683d7fea 431 SMART SM00471 53 189 2.2E-8 T 13-10-2018 IPR003607 HD/PDEase domain trd_A0597 6212fb9f5ecafa4b50c8e60b683d7fea 431 SUPERFAMILY SSF109604 7 315 4.96E-64 T 13-10-2018 trd_1069 e4112a2ed5c45ebf46a8e741d8b83043 289 Pfam PF08241 Methyltransferase domain 50 140 9.9E-23 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 trd_1069 e4112a2ed5c45ebf46a8e741d8b83043 289 SUPERFAMILY SSF53335 28 215 5.88E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1069 e4112a2ed5c45ebf46a8e741d8b83043 289 Gene3D G3DSA:3.40.50.150 27 208 2.3E-35 T 13-10-2018 trd_0130 3939a9185c37d529eb109fb3cd477f68 279 Gene3D G3DSA:1.10.3640.10 177 279 8.0E-35 T 13-10-2018 IPR037161 Semialdehyde dehydrogenase-like, C-terminal trd_0130 3939a9185c37d529eb109fb3cd477f68 279 Pfam PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term 124 277 9.9E-63 T 13-10-2018 IPR031663 Phosphogluconate dehydrogenase (decarboxylating) , C-terminal trd_0130 3939a9185c37d529eb109fb3cd477f68 279 Gene3D G3DSA:3.40.50.720 1 176 9.4E-49 T 13-10-2018 trd_0130 3939a9185c37d529eb109fb3cd477f68 279 SUPERFAMILY SSF51735 6 166 7.54E-12 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 SUPERFAMILY SSF52096 5 271 3.56E-81 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 Pfam PF00378 Enoyl-CoA hydratase/isomerase 23 269 2.4E-83 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 Gene3D G3DSA:1.10.12.10 213 263 6.8E-28 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 113 133 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 TIGRFAM TIGR01929 menB: naphthoate synthase 12 271 1.3E-135 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 Gene3D G3DSA:3.90.226.10 4 212 4.7E-75 T 13-10-2018 trd_A0304 f3e084bd584cf5b4641da9828213a98d 275 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 6 274 56.187 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 trd_0022 687e3a210a8793e86f284eeb2e5b99da 329 Gene3D G3DSA:1.20.120.920 82 327 1.8E-71 T 13-10-2018 trd_0022 687e3a210a8793e86f284eeb2e5b99da 329 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 5 322 1.3E-102 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 trd_0022 687e3a210a8793e86f284eeb2e5b99da 329 TIGRFAM TIGR03641 cas1_HMARI: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP 4 327 5.3E-134 T 13-10-2018 IPR019858 CRISPR-associated protein Cas1, HMARI/TNEAP subtype GO:0004520|GO:0043571|GO:0046872 trd_0022 687e3a210a8793e86f284eeb2e5b99da 329 Pfam PF01867 CRISPR associated protein Cas1 5 284 7.4E-94 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 trd_0022 687e3a210a8793e86f284eeb2e5b99da 329 Gene3D G3DSA:3.100.10.20 2 81 2.1E-30 T 13-10-2018 trd_0022 687e3a210a8793e86f284eeb2e5b99da 329 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 1 314 27.559 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 3 492 1.0E-185 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 Gene3D G3DSA:3.30.930.10 148 501 2.0E-133 T 13-10-2018 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 SUPERFAMILY SSF50249 2 145 4.93E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 Pfam PF01336 OB-fold nucleic acid binding domain 58 135 3.7E-11 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 Gene3D G3DSA:2.40.50.140 1 147 1.9E-38 T 13-10-2018 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 PRINTS PR00982 Lysyl-tRNA synthetase signature 205 221 1.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 PRINTS PR00982 Lysyl-tRNA synthetase signature 375 391 1.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 PRINTS PR00982 Lysyl-tRNA synthetase signature 234 247 1.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 PRINTS PR00982 Lysyl-tRNA synthetase signature 252 269 1.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 PRINTS PR00982 Lysyl-tRNA synthetase signature 189 199 1.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 Pfam PF00152 tRNA synthetases class II (D, K and N) 153 490 3.2E-82 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 SUPERFAMILY SSF55681 152 490 3.19E-117 T 13-10-2018 trd_0874 9b7d88c95bb8a618e0f1abce943cee40 529 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 9 493 41.982 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 Gene3D G3DSA:1.20.140.10 210 388 1.3E-35 T 13-10-2018 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 Gene3D G3DSA:2.40.110.10 111 203 1.4E-30 T 13-10-2018 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 237 368 7.0E-25 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 SUPERFAMILY SSF47203 228 365 1.15E-12 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 SUPERFAMILY SSF56645 9 203 3.66E-31 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 3 83 3.5E-7 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 PIRSF PIRSF016578 1 390 3.8E-101 T 13-10-2018 trd_A0928 7af576cb18e70e031d4226ceceee05a4 390 Gene3D G3DSA:1.10.540.10 1 106 7.2E-25 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 trd_0136 98f912350a6ccc99e3c79673e5e8fdda 293 Gene3D G3DSA:1.10.3720.10 47 292 7.6E-56 T 13-10-2018 IPR035906 MetI-like superfamily trd_0136 98f912350a6ccc99e3c79673e5e8fdda 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 287 5.5E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0136 98f912350a6ccc99e3c79673e5e8fdda 293 SUPERFAMILY SSF161098 52 277 2.88E-50 T 13-10-2018 IPR035906 MetI-like superfamily trd_0579 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 136 363 3.4E-125 T 13-10-2018 trd_0579 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 465 638 2.0E-137 T 13-10-2018 trd_0579 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 371 763 2.0E-137 T 13-10-2018 trd_0579 2c17f7151a19e51730063b569c65c16d 791 SUPERFAMILY SSF54665 4 156 6.54E-47 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_0579 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.90.1170.50 35 135 3.4E-125 T 13-10-2018 trd_0579 2c17f7151a19e51730063b569c65c16d 791 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 135 1.8E-30 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_0579 2c17f7151a19e51730063b569c65c16d 791 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 151 723 2.0E-187 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_0579 2c17f7151a19e51730063b569c65c16d 791 SMART SM01008 20 135 1.1E-48 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_0579 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 19 287 3.4E-125 T 13-10-2018 trd_0579 2c17f7151a19e51730063b569c65c16d 791 SUPERFAMILY SSF56003 127 785 4.19E-198 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_0989 fdfc248bc2fd289700745760c2e27186 142 Pfam PF00164 Ribosomal protein S12/S23 43 141 2.2E-39 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 141 40.726 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 128 140 5.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 76 95 5.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 60 75 5.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 45 60 5.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 95 112 5.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 112 128 5.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 PIRSF PIRSF002133 1 142 3.3E-49 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 Gene3D G3DSA:2.40.50.140 1 142 6.7E-62 T 13-10-2018 trd_0989 fdfc248bc2fd289700745760c2e27186 142 ProSitePatterns PS00055 Ribosomal protein S12 signature. 61 68 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0989 fdfc248bc2fd289700745760c2e27186 142 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 141 7.2E-66 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0989 fdfc248bc2fd289700745760c2e27186 142 SUPERFAMILY SSF50249 2 141 2.48E-48 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 88 5.8E-40 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 SMART SM01387 8 88 5.5E-53 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 2.0E-26 T 13-10-2018 trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.218 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 Gene3D G3DSA:1.10.287.10 1 89 3.8E-37 T 13-10-2018 trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 SUPERFAMILY SSF47060 3 88 3.53E-36 T 13-10-2018 IPR009068 S15/NS1, RNA-binding trd_0624 fc8f3378b584c643e0fe76ee020090ed 89 Pfam PF00312 Ribosomal protein S15 8 88 8.1E-38 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:2.160.20.60 1231 1501 1.7E-101 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:3.20.20.70 798 1226 2.1E-184 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF04898 Glutamate synthase central domain 472 753 1.6E-105 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 SUPERFAMILY SSF51395 461 1210 4.89E-249 T 13-10-2018 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 SUPERFAMILY SSF56235 25 446 1.37E-146 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF00310 Glutamine amidotransferases class-II 25 444 1.2E-169 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF01645 Conserved region in glutamate synthase 813 1175 1.2E-150 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:3.60.20.10 25 447 2.3E-169 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 SUPERFAMILY SSF69336 1232 1483 8.76E-86 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:3.20.20.70 450 797 3.0E-136 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1105 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF01493 GXGXG motif 1257 1444 7.1E-73 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 Gene3D G3DSA:2.40.110.10 137 247 5.3E-41 T 13-10-2018 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 Gene3D G3DSA:1.20.140.10 248 401 1.4E-54 T 13-10-2018 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 391 7.7E-53 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 139 151 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 350 369 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 Gene3D G3DSA:1.10.540.10 18 136 3.8E-38 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 134 4.6E-31 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 137 231 5.9E-27 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 PIRSF PIRSF016578 14 399 2.3E-16 T 13-10-2018 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 SUPERFAMILY SSF56645 17 253 9.16E-77 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_1340 3ef48f7e7c12286781b2be0049a3f11e 408 SUPERFAMILY SSF47203 242 397 3.54E-56 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 SUPERFAMILY SSF53901 5 269 3.26E-93 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 2.9E-49 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 Gene3D G3DSA:3.40.47.10 6 275 2.2E-166 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 Pfam PF00108 Thiolase, N-terminal domain 5 262 1.2E-102 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 SUPERFAMILY SSF53901 270 391 1.66E-46 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 PIRSF PIRSF000429 2 392 2.2E-141 T 13-10-2018 IPR002155 Thiolase GO:0016747 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 Gene3D G3DSA:3.40.47.10 126 389 2.2E-166 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.9E-154 T 13-10-2018 IPR002155 Thiolase GO:0016747 trd_0712 2d286bc734f93c2a76335f4cb006f964 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 trd_1074 8e82ca3ee4b280cc85e09d388cfe2acd 285 PIRSF PIRSF006648 16 284 1.2E-60 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_1074 8e82ca3ee4b280cc85e09d388cfe2acd 285 Pfam PF01061 ABC-2 type transporter 50 250 2.5E-36 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 trd_1074 8e82ca3ee4b280cc85e09d388cfe2acd 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 208 227 9.7E-12 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_1074 8e82ca3ee4b280cc85e09d388cfe2acd 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 171 195 9.7E-12 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_1074 8e82ca3ee4b280cc85e09d388cfe2acd 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 88 110 9.7E-12 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_1074 8e82ca3ee4b280cc85e09d388cfe2acd 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 228 247 9.7E-12 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0862 6919f7aaf9475bd8d8fdbb1373eab39c 121 Gene3D G3DSA:3.30.450.30 2 119 1.1E-17 T 13-10-2018 trd_0862 6919f7aaf9475bd8d8fdbb1373eab39c 121 SMART SM00960 3 92 7.0E-9 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain trd_0862 6919f7aaf9475bd8d8fdbb1373eab39c 121 Pfam PF03259 Roadblock/LC7 domain 3 92 8.0E-10 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain trd_0862 6919f7aaf9475bd8d8fdbb1373eab39c 121 SUPERFAMILY SSF103196 4 114 1.2E-15 T 13-10-2018 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.30.190.20 132 248 1.8E-252 T 13-10-2018 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 939 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 SUPERFAMILY SSF52540 11 585 8.15E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 954 23.03 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 SUPERFAMILY SSF52540 632 927 4.39E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.20.1580.10 92 508 1.8E-252 T 13-10-2018 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.10.8.280 293 413 1.8E-252 T 13-10-2018 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 ProSitePatterns PS00211 ABC transporters family signature. 844 858 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.40.50.300 7 610 1.8E-252 T 13-10-2018 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.20.1580.10 707 844 1.1E-146 T 13-10-2018 trd_1740 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.40.50.300 629 950 1.1E-146 T 13-10-2018 trd_1626 b6906ac1fcd234bd099dffc4165e29da 254 SUPERFAMILY SSF51621 1 244 1.8E-69 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_1626 b6906ac1fcd234bd099dffc4165e29da 254 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 17 231 4.8E-34 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 trd_1626 b6906ac1fcd234bd099dffc4165e29da 254 Gene3D G3DSA:3.20.20.60 1 254 5.0E-82 T 13-10-2018 trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 SUPERFAMILY SSF52540 5 230 3.42E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 SUPERFAMILY SSF52540 260 489 4.3E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 Pfam PF00005 ABC transporter 270 428 4.3E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 Gene3D G3DSA:3.40.50.300 256 505 8.1E-45 T 13-10-2018 trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 Gene3D G3DSA:3.40.50.300 1 236 1.5E-53 T 13-10-2018 trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 SMART SM00382 279 476 0.0092 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 SMART SM00382 29 217 1.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0773 7f3caadd7a4ed2f839eb6aca3199a6e0 511 Pfam PF00005 ABC transporter 20 169 7.7E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0116 48739ea057af396fc8ff4d2152051d71 428 Gene3D G3DSA:1.10.540.10 3 120 4.0E-29 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 trd_0116 48739ea057af396fc8ff4d2152051d71 428 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 378 1.2E-45 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 trd_0116 48739ea057af396fc8ff4d2152051d71 428 Gene3D G3DSA:2.40.110.10 121 235 1.3E-36 T 13-10-2018 trd_0116 48739ea057af396fc8ff4d2152051d71 428 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 3.0E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 trd_0116 48739ea057af396fc8ff4d2152051d71 428 SUPERFAMILY SSF47203 228 385 3.7E-52 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_0116 48739ea057af396fc8ff4d2152051d71 428 Gene3D G3DSA:1.20.140.10 236 395 1.7E-49 T 13-10-2018 trd_0116 48739ea057af396fc8ff4d2152051d71 428 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 118 1.1E-25 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 trd_0116 48739ea057af396fc8ff4d2152051d71 428 SUPERFAMILY SSF56645 7 243 1.7E-72 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 SUPERFAMILY SSF46906 67 140 1.44E-27 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 3.7E-28 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Gene3D G3DSA:1.10.10.2720 73 141 1.6E-30 T 13-10-2018 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 140 7.5E-64 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 7.8E-27 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 1.0E-10 T 13-10-2018 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 SUPERFAMILY SSF54747 3 72 1.24E-28 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 SMART SM00649 9 140 1.7E-83 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Gene3D G3DSA:3.30.1550.10 2 72 6.7E-33 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily trd_0681 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.702 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 trd_A0821 b24e18f8030604d7014b8ec1865b937d 448 Gene3D G3DSA:3.40.50.300 194 447 4.7E-48 T 13-10-2018 trd_A0821 b24e18f8030604d7014b8ec1865b937d 448 SUPERFAMILY SSF52540 291 445 5.67E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0365 1df0ef4de891c315ab146d3545f267a6 562 SMART SM00917 402 544 7.4E-35 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 Pfam PF00682 HMGL-like 32 303 2.7E-43 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 Pfam PF08502 LeuA allosteric (dimerisation) domain 404 541 6.3E-24 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 SUPERFAMILY SSF51569 28 320 2.38E-79 T 13-10-2018 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 39 55 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 Gene3D G3DSA:3.20.20.70 31 353 8.5E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 SUPERFAMILY SSF110921 429 540 4.58E-18 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_0365 1df0ef4de891c315ab146d3545f267a6 562 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 32 545 6.9E-207 T 13-10-2018 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 trd_0108 14c07109c14ba46c902f4bd6c7d4f034 276 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 17 265 34.395 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0108 14c07109c14ba46c902f4bd6c7d4f034 276 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 51 64 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0108 14c07109c14ba46c902f4bd6c7d4f034 276 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 11 246 4.1E-79 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0108 14c07109c14ba46c902f4bd6c7d4f034 276 SUPERFAMILY SSF51366 5 255 2.35E-85 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0108 14c07109c14ba46c902f4bd6c7d4f034 276 Pfam PF00290 Tryptophan synthase alpha chain 11 252 2.3E-86 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0108 14c07109c14ba46c902f4bd6c7d4f034 276 Gene3D G3DSA:3.20.20.70 2 272 6.5E-101 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0097 8a4a486461adef5452e68c0a70eec4aa 572 SUPERFAMILY SSF56801 43 565 3.4E-134 T 13-10-2018 trd_A0097 8a4a486461adef5452e68c0a70eec4aa 572 Gene3D G3DSA:3.30.300.310 465 567 2.1E-37 T 13-10-2018 trd_A0097 8a4a486461adef5452e68c0a70eec4aa 572 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_A0097 8a4a486461adef5452e68c0a70eec4aa 572 Gene3D G3DSA:3.40.50.12780 37 464 1.3E-109 T 13-10-2018 trd_A0097 8a4a486461adef5452e68c0a70eec4aa 572 Pfam PF00501 AMP-binding enzyme 71 469 1.1E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_A0097 8a4a486461adef5452e68c0a70eec4aa 572 Pfam PF13193 AMP-binding enzyme C-terminal domain 478 553 1.3E-25 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 Gene3D G3DSA:3.40.50.1220 189 348 8.0E-46 T 13-10-2018 trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 SUPERFAMILY SSF52518 3 186 5.4E-48 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 321 4.6E-33 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 175 8.2E-49 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 SUPERFAMILY SSF52518 357 533 9.24E-54 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 SUPERFAMILY SSF52467 160 347 2.55E-42 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 Gene3D G3DSA:3.40.50.970 2 188 1.2E-56 T 13-10-2018 trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 Gene3D G3DSA:3.40.50.970 352 533 8.9E-55 T 13-10-2018 trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 413 432 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_0559 1b24fc9276aa64c7f0890d75eca7f8ad 541 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 523 2.7E-37 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Gene3D G3DSA:3.20.20.450 660 896 1.9E-75 T 13-10-2018 IPR035919 EAL domain superfamily trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SUPERFAMILY SSF55781 40 196 4.36E-11 T 13-10-2018 trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Pfam PF00990 Diguanylate cyclase, GGDEF domain 486 643 1.1E-43 T 13-10-2018 IPR000160 GGDEF domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SMART SM00091 362 428 8.6E-6 T 13-10-2018 IPR000014 PAS domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Gene3D G3DSA:3.30.450.40 195 362 5.0E-15 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Gene3D G3DSA:3.30.450.40 16 194 8.1E-13 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Pfam PF13185 GAF domain 215 354 1.8E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SUPERFAMILY SSF55781 218 367 1.92E-14 T 13-10-2018 trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Pfam PF00989 PAS fold 363 472 1.2E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Pfam PF00563 EAL domain 664 891 2.6E-62 T 13-10-2018 IPR001633 EAL domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SUPERFAMILY SSF55073 491 649 7.06E-50 T 13-10-2018 IPR029787 Nucleotide cyclase trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SMART SM00267 475 647 5.2E-61 T 13-10-2018 IPR000160 GGDEF domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 483 646 2.2E-47 T 13-10-2018 IPR000160 GGDEF domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 365 482 8.5E-14 T 13-10-2018 IPR000014 PAS domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SUPERFAMILY SSF141868 665 894 1.83E-70 T 13-10-2018 IPR035919 EAL domain superfamily trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SMART SM00086 433 475 1.6E-4 T 13-10-2018 IPR001610 PAC motif trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Gene3D G3DSA:3.30.450.20 363 480 2.9E-17 T 13-10-2018 trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SUPERFAMILY SSF55785 374 482 1.93E-17 T 13-10-2018 IPR035965 PAS domain superfamily trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 SMART SM00052 657 896 1.6E-67 T 13-10-2018 IPR001633 EAL domain trd_1907 e30464c7ce84df239f3d0a48a2243ef2 897 Gene3D G3DSA:3.30.70.270 481 650 2.8E-57 T 13-10-2018 trd_A0194 5ea5c172cee07e8a34ac88e04068f947 704 TIGRFAM TIGR04246 nitrous_NosZ_Gp: nitrous-oxide reductase, Sec-dependent 100 703 4.5E-282 T 13-10-2018 IPR026468 Nitrous-oxide reductase, Sec-dependent trd_A0194 5ea5c172cee07e8a34ac88e04068f947 704 Gene3D G3DSA:2.60.40.420 587 702 4.4E-28 T 13-10-2018 IPR008972 Cupredoxin trd_A0194 5ea5c172cee07e8a34ac88e04068f947 704 Gene3D G3DSA:2.130.10.10 103 582 1.2E-174 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_A0194 5ea5c172cee07e8a34ac88e04068f947 704 SUPERFAMILY SSF50974 103 573 8.37E-80 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 trd_A0194 5ea5c172cee07e8a34ac88e04068f947 704 SUPERFAMILY SSF49503 600 703 2.68E-23 T 13-10-2018 IPR008972 Cupredoxin trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 Gene3D G3DSA:3.30.460.30 3 155 7.4E-42 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 312 388 6.9E-5 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 SUPERFAMILY SSF69742 3 152 1.83E-36 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 4 405 21.712 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 PIRSF PIRSF000445 3 399 2.0E-89 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 297 5.2E-28 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 8 151 5.0E-37 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 SUPERFAMILY SSF51735 159 299 1.42E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 Gene3D G3DSA:3.40.50.720 159 300 3.7E-34 T 13-10-2018 trd_1122 db85d47fc659b0ac33bd28feb16179d1 406 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 6 368 2.7E-74 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 trd_A0811 cb79127b4ff2a0d0cda58c1afff3a3bb 478 SUPERFAMILY SSF102114 166 445 8.37E-25 T 13-10-2018 trd_A0811 cb79127b4ff2a0d0cda58c1afff3a3bb 478 Pfam PF04055 Radical SAM superfamily 197 357 6.4E-10 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_A0811 cb79127b4ff2a0d0cda58c1afff3a3bb 478 SMART SM00729 192 407 1.4E-13 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_A0811 cb79127b4ff2a0d0cda58c1afff3a3bb 478 Gene3D G3DSA:3.80.30.20 192 377 9.3E-12 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe trd_0366 add0cccc55d481346dbd0d395ad8197f 350 PIRSF PIRSF000148 4 350 3.0E-100 T 13-10-2018 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 159 330 2.1E-36 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 Gene3D G3DSA:3.30.360.10 151 327 1.1E-140 T 13-10-2018 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 TIGRFAM TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase 6 345 7.6E-135 T 13-10-2018 IPR005676 Aspartate-semialdehyde dehydrogenase, peptidoglycan lacking GO:0050661|GO:0055114 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 SMART SM00859 6 130 1.0E-31 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 128 9.6E-30 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 Gene3D G3DSA:3.40.50.720 7 345 1.1E-140 T 13-10-2018 trd_0366 add0cccc55d481346dbd0d395ad8197f 350 SUPERFAMILY SSF51735 5 177 4.12E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0366 add0cccc55d481346dbd0d395ad8197f 350 SUPERFAMILY SSF55347 148 332 1.26E-45 T 13-10-2018 trd_0073 cb5f8c83fee13a72289dd3f5459d4117 467 Pfam PF04389 Peptidase family M28 232 426 1.1E-31 T 13-10-2018 IPR007484 Peptidase M28 trd_0073 cb5f8c83fee13a72289dd3f5459d4117 467 Gene3D G3DSA:3.40.630.10 36 420 7.1E-89 T 13-10-2018 trd_0073 cb5f8c83fee13a72289dd3f5459d4117 467 Gene3D G3DSA:3.50.30.30 77 222 7.1E-89 T 13-10-2018 trd_0073 cb5f8c83fee13a72289dd3f5459d4117 467 Pfam PF02225 PA domain 104 205 2.0E-8 T 13-10-2018 IPR003137 PA domain trd_0073 cb5f8c83fee13a72289dd3f5459d4117 467 SUPERFAMILY SSF52025 86 175 1.2E-9 T 13-10-2018 trd_0073 cb5f8c83fee13a72289dd3f5459d4117 467 SUPERFAMILY SSF53187 17 434 1.15E-51 T 13-10-2018 trd_0557 058b63d4daa89c1e82de9a75eae73669 155 Gene3D G3DSA:2.60.40.420 27 155 5.2E-33 T 13-10-2018 IPR008972 Cupredoxin trd_0557 058b63d4daa89c1e82de9a75eae73669 155 SUPERFAMILY SSF49503 63 154 4.22E-31 T 13-10-2018 IPR008972 Cupredoxin trd_0557 058b63d4daa89c1e82de9a75eae73669 155 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 100 148 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0557 058b63d4daa89c1e82de9a75eae73669 155 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 82 149 8.3E-10 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1420 e0117101e77264dda49ac1d138f4af31 362 Gene3D G3DSA:3.20.20.450 120 362 3.6E-58 T 13-10-2018 IPR035919 EAL domain superfamily trd_1420 e0117101e77264dda49ac1d138f4af31 362 SMART SM00052 106 358 6.5E-31 T 13-10-2018 IPR001633 EAL domain trd_1420 e0117101e77264dda49ac1d138f4af31 362 Pfam PF00563 EAL domain 125 353 2.9E-50 T 13-10-2018 IPR001633 EAL domain trd_1420 e0117101e77264dda49ac1d138f4af31 362 SUPERFAMILY SSF141868 125 359 8.63E-58 T 13-10-2018 IPR035919 EAL domain superfamily trd_A0768 c5acba1e8d0cdc17fde037936e5b5c9e 257 SUPERFAMILY SSF88713 5 249 6.45E-88 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_A0768 c5acba1e8d0cdc17fde037936e5b5c9e 257 Pfam PF03746 LamB/YcsF family 5 240 1.5E-93 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 trd_A0768 c5acba1e8d0cdc17fde037936e5b5c9e 257 Gene3D G3DSA:3.20.20.370 4 253 2.7E-97 T 13-10-2018 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 9.7E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 298 319 9.7E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 268 283 9.7E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 204 222 9.7E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 224 241 9.7E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 343 6.2E-124 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 Gene3D G3DSA:3.40.1690.10 214 353 8.5E-57 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 4 348 1.3E-116 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 trd_A0037 af8f6c2135208cb327a1bcac2afefcee 363 SUPERFAMILY SSF160544 240 347 2.35E-40 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 43 53 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 Gene3D G3DSA:3.30.390.30 349 469 3.5E-45 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 469 2.3E-156 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PIRSF PIRSF000350 1 465 8.2E-79 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 330 4.0E-55 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 Gene3D G3DSA:3.50.50.60 9 337 8.9E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 Gene3D G3DSA:3.50.50.60 159 281 8.9E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 350 458 6.4E-37 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 3.3E-35 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 3.3E-35 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 283 3.3E-35 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 198 3.3E-35 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 3.3E-35 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 SUPERFAMILY SSF51905 3 340 9.87E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 SUPERFAMILY SSF55424 346 468 1.34E-40 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 346 367 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 42 57 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 180 205 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 282 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 2.3E-63 T 13-10-2018 trd_A0486 7d655b63edb6d38aca0707a4034b1eca 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.3E-63 T 13-10-2018 trd_1820 6c488f2d9950c78c03d35e4705df2644 261 SUPERFAMILY SSF102712 177 223 3.27E-5 T 13-10-2018 trd_1820 6c488f2d9950c78c03d35e4705df2644 261 TIGRFAM TIGR00608 radc: DNA repair protein RadC 44 255 2.1E-66 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 trd_1820 6c488f2d9950c78c03d35e4705df2644 261 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 206 211 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site trd_1820 6c488f2d9950c78c03d35e4705df2644 261 Gene3D G3DSA:3.40.140.10 134 256 4.7E-37 T 13-10-2018 trd_1820 6c488f2d9950c78c03d35e4705df2644 261 SUPERFAMILY SSF47781 52 123 2.54E-7 T 13-10-2018 IPR010994 RuvA domain 2-like trd_1820 6c488f2d9950c78c03d35e4705df2644 261 Pfam PF04002 RadC-like JAB domain 136 255 1.2E-37 T 13-10-2018 IPR025657 RadC-like JAB domain trd_0697 2a151992b03475df8e9c5382e916e8a6 465 SMART SM00840 350 419 1.1E-15 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 465 37.473 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 314 1.8E-121 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 SUPERFAMILY SSF47323 335 464 2.88E-30 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 Pfam PF09190 DALR domain 350 408 3.0E-15 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 Gene3D G3DSA:1.20.120.640 307 464 1.2E-32 T 13-10-2018 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 463 1.1E-155 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 Gene3D G3DSA:3.40.50.620 1 306 7.7E-134 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0697 2a151992b03475df8e9c5382e916e8a6 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 6.1E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 6.1E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 6.1E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 6.1E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_0697 2a151992b03475df8e9c5382e916e8a6 465 SUPERFAMILY SSF52374 4 314 4.02E-96 T 13-10-2018 trd_0377 c94390cc72ee2f2ff1e349f92a8b87d9 126 SUPERFAMILY SSF82649 4 118 4.36E-41 T 13-10-2018 trd_0377 c94390cc72ee2f2ff1e349f92a8b87d9 126 Pfam PF01592 NifU-like N terminal domain 5 119 2.8E-31 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 trd_0377 c94390cc72ee2f2ff1e349f92a8b87d9 126 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 3 87 2.4E-31 T 13-10-2018 trd_0377 c94390cc72ee2f2ff1e349f92a8b87d9 126 Gene3D G3DSA:3.90.1010.10 4 124 1.8E-46 T 13-10-2018 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 ProSitePatterns PS00104 EPSP synthase signature 1. 97 111 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 PIRSF PIRSF000505 10 433 2.4E-144 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 18 427 6.8E-126 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 23 429 1.7E-134 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 18 433 33.454 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 Gene3D G3DSA:3.65.10.10 24 423 1.4E-140 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 Gene3D G3DSA:3.65.10.10 30 251 1.4E-140 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 SUPERFAMILY SSF55205 18 429 2.75E-122 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 trd_0235 d855726b0f5ee0b8245297d5754b3a9e 434 ProSitePatterns PS00885 EPSP synthase signature 2. 346 364 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 PIRSF PIRSF001221 424 498 0.11 T 13-10-2018 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 PIRSF PIRSF001221 494 527 2.8 T 13-10-2018 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 PIRSF PIRSF001221 62 411 1.2E-42 T 13-10-2018 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 Gene3D G3DSA:3.90.1300.10 79 531 4.0E-146 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 ProSitePatterns PS00571 Amidases signature. 226 257 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 Pfam PF01425 Amidase 99 514 1.0E-116 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_0309 d0ff1e0282c3394a46822548a7856a0e 532 SUPERFAMILY SSF75304 80 524 3.92E-141 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_A0187 7caac73ecd49f93594e3b982247d419d 134 SUPERFAMILY SSF75169 1 134 5.72E-21 T 13-10-2018 IPR027396 DsrEFH-like trd_A0187 7caac73ecd49f93594e3b982247d419d 134 Pfam PF02635 DsrE/DsrF-like family 27 101 6.9E-5 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein trd_1518 afb531a96045bdd410191dcb6966ad1d 352 Gene3D G3DSA:3.30.360.10 146 323 2.4E-116 T 13-10-2018 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 140 1.4E-32 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 143 159 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 SUPERFAMILY SSF51735 4 174 1.0E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1518 afb531a96045bdd410191dcb6966ad1d 352 SMART SM00859 4 140 1.4E-53 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 3 345 40.334 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 SUPERFAMILY SSF55347 148 319 6.67E-37 T 13-10-2018 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 157 322 7.6E-9 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 Hamap MF_02083 [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase [lysY]. 3 351 53.611 T 13-10-2018 IPR037535 [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase GO:0016620 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 Gene3D G3DSA:3.40.50.720 6 337 2.4E-116 T 13-10-2018 trd_1518 afb531a96045bdd410191dcb6966ad1d 352 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 351 8.9E-119 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_1944 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 Pfam PF03737 Aldolase/RraA 28 193 5.9E-34 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein trd_1944 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 SUPERFAMILY SSF89562 25 203 5.76E-40 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily trd_1944 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 Gene3D G3DSA:3.50.30.100 3 215 1.1E-47 T 13-10-2018 trd_0024 ae28a926bb3b7d829f3c1f6671cabb3f 87 SUPERFAMILY SSF143430 1 78 4.84E-25 T 13-10-2018 trd_0024 ae28a926bb3b7d829f3c1f6671cabb3f 87 Pfam PF09827 CRISPR associated protein Cas2 1 72 3.8E-20 T 13-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 trd_0024 ae28a926bb3b7d829f3c1f6671cabb3f 87 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 87 15.549 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 trd_0024 ae28a926bb3b7d829f3c1f6671cabb3f 87 Gene3D G3DSA:3.30.70.240 1 65 1.2E-27 T 13-10-2018 trd_0024 ae28a926bb3b7d829f3c1f6671cabb3f 87 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 77 3.5E-11 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 trd_A0243 b8e31aa0417f6aad58f6a660ee74c0a8 127 Gene3D G3DSA:3.30.460.10 2 91 4.3E-14 T 13-10-2018 trd_A0243 b8e31aa0417f6aad58f6a660ee74c0a8 127 Pfam PF01909 Nucleotidyltransferase domain 14 71 3.6E-10 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 trd_A0243 b8e31aa0417f6aad58f6a660ee74c0a8 127 SUPERFAMILY SSF81301 10 102 1.05E-16 T 13-10-2018 trd_0406 c967f1779d856bc2d540389790fe35fe 233 Pfam PF00230 Major intrinsic protein 2 226 1.3E-40 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 SUPERFAMILY SSF81338 2 232 3.66E-59 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 ProSitePatterns PS00221 MIP family signature. 62 70 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 Gene3D G3DSA:1.20.1080.10 1 233 3.9E-63 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 166 188 3.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 44 68 3.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 213 233 3.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 136 154 3.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 2 21 3.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0406 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 81 100 3.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 Gene3D G3DSA:3.40.50.620 12 221 1.7E-71 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 Gene3D G3DSA:1.10.240.10 222 330 4.6E-35 T 13-10-2018 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 6 400 42.686 T 13-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 Gene3D G3DSA:3.10.290.10 331 399 6.1E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 SUPERFAMILY SSF52374 11 318 2.93E-89 T 13-10-2018 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 Pfam PF01479 S4 domain 342 381 3.6E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 Pfam PF00579 tRNA synthetases class I (W and Y) 36 319 1.8E-71 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 SUPERFAMILY SSF55174 305 398 1.57E-16 T 13-10-2018 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 SMART SM00363 339 400 2.8E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 11 398 4.9E-105 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 4.2E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 215 227 4.2E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 4.2E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 trd_0768 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 4.2E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 trd_0505 d8f60316d0b7a2fdc9e8dd973fb6715a 171 SUPERFAMILY SSF52121 12 161 2.09E-62 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0505 d8f60316d0b7a2fdc9e8dd973fb6715a 171 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 16 161 31.617 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0505 d8f60316d0b7a2fdc9e8dd973fb6715a 171 Gene3D G3DSA:3.40.50.960 9 162 1.7E-64 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0505 d8f60316d0b7a2fdc9e8dd973fb6715a 171 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 21 158 6.4E-60 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0505 d8f60316d0b7a2fdc9e8dd973fb6715a 171 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 22 157 1.7E-56 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_A0415 30a3c6da44c05b4d38147312a399f4db 436 Pfam PF04542 Sigma-70 region 2 35 101 7.4E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0415 30a3c6da44c05b4d38147312a399f4db 436 SUPERFAMILY SSF88946 11 108 1.81E-28 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0415 30a3c6da44c05b4d38147312a399f4db 436 Gene3D G3DSA:1.10.10.10 121 198 7.9E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0415 30a3c6da44c05b4d38147312a399f4db 436 Gene3D G3DSA:1.10.1740.10 10 120 9.1E-30 T 13-10-2018 trd_A0415 30a3c6da44c05b4d38147312a399f4db 436 SUPERFAMILY SSF88659 112 195 1.79E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0415 30a3c6da44c05b4d38147312a399f4db 436 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 194 4.7E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 Gene3D G3DSA:3.30.230.10 1 162 3.2E-44 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 SUPERFAMILY SSF54211 5 142 5.09E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 Pfam PF08544 GHMP kinases C terminal 201 272 8.1E-14 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 PIRSF PIRSF000676 1 298 2.8E-78 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 83 94 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 TIGRFAM TIGR00191 thrB: homoserine kinase 4 296 2.1E-75 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 Hamap MF_00384 Homoserine kinase [thrB]. 5 296 28.751 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 SUPERFAMILY SSF55060 159 274 2.34E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 163 180 4.4E-35 T 13-10-2018 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 10 25 4.4E-35 T 13-10-2018 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 90 105 4.4E-35 T 13-10-2018 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 242 257 4.4E-35 T 13-10-2018 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 124 137 4.4E-35 T 13-10-2018 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 Pfam PF00288 GHMP kinases N terminal domain 77 137 4.3E-14 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 trd_1251 d87b2a3f8d91744c45c4b626b184e349 315 Gene3D G3DSA:3.30.70.890 163 279 5.5E-35 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 Gene3D G3DSA:1.10.10.10 3 84 2.8E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 PIRSF PIRSF005739 162 332 1.7E-9 T 13-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 PIRSF PIRSF005739 7 136 55.0 T 13-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 Gene3D G3DSA:3.40.50.150 90 332 6.5E-50 T 13-10-2018 trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 SUPERFAMILY SSF53335 99 326 8.97E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 Pfam PF00891 O-methyltransferase 105 316 4.6E-21 T 13-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 Pfam PF16864 Dimerisation domain 10 91 1.4E-7 T 13-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain trd_1284 0c5ee2774da786f75b6daa44ac5d7bd0 347 SUPERFAMILY SSF46785 5 83 8.38E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0449 e513ddfbb589e64648bbacb5ed5a587e 347 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 80 336 1.5E-116 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 trd_0449 e513ddfbb589e64648bbacb5ed5a587e 347 Gene3D G3DSA:3.20.20.70 70 339 3.2E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0449 e513ddfbb589e64648bbacb5ed5a587e 347 Pfam PF00793 DAHP synthetase I family 96 331 9.0E-72 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 trd_0449 e513ddfbb589e64648bbacb5ed5a587e 347 SUPERFAMILY SSF51569 8 342 9.07E-105 T 13-10-2018 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 392 2.4E-7 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 14 461 5.6E-116 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 12 462 28.504 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 SUPERFAMILY SSF53244 321 462 1.88E-32 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 Gene3D G3DSA:3.40.50.720 7 103 3.7E-23 T 13-10-2018 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 SUPERFAMILY SSF53623 108 316 1.11E-46 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 Pfam PF08245 Mur ligase middle domain 121 301 2.3E-28 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 SUPERFAMILY SSF51984 8 103 1.19E-11 T 13-10-2018 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 Gene3D G3DSA:3.40.1190.10 106 317 3.4E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0061 c5548be1f1122fb22f23fac54d95341d 469 Gene3D G3DSA:3.90.190.20 325 461 8.4E-39 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 Pfam PF02441 Flavoprotein 8 180 1.5E-42 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 SUPERFAMILY SSF52507 4 182 1.44E-54 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 SUPERFAMILY SSF102645 186 395 2.49E-67 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 5 390 7.2E-125 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 365 6.2E-66 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 Gene3D G3DSA:3.40.50.10300 185 399 2.1E-74 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 trd_0347 6a01513b7d24ce86a5b46475c9223eef 403 Gene3D G3DSA:3.40.50.1950 2 184 3.1E-52 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 SMART SM00434 17 471 3.9E-288 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Gene3D G3DSA:3.90.199.10 38 493 7.8E-218 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Gene3D G3DSA:3.30.1360.40 242 338 7.8E-218 T 13-10-2018 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Gene3D G3DSA:1.10.268.10 376 464 7.8E-218 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 38 476 8.5E-162 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Gene3D G3DSA:2.120.10.90 503 811 1.4E-123 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal trd_0652 9268d500bd5fa22e14058da10ece80e5 836 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 16 809 0.0 T 13-10-2018 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 8 813 24.53 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 SUPERFAMILY SSF101904 505 810 3.27E-102 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal trd_0652 9268d500bd5fa22e14058da10ece80e5 836 SUPERFAMILY SSF56719 36 493 3.4E-182 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 715 760 3.6E-13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 765 810 2.8E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 560 609 5.5E-11 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 618 661 1.3E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 664 710 3.8E-15 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 trd_0652 9268d500bd5fa22e14058da10ece80e5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 510 556 8.6E-11 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 trd_0009 f2dcc2358ccc8d085cf6d6a105e5738e 894 SUPERFAMILY SSF50969 666 877 7.53E-6 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like trd_0009 f2dcc2358ccc8d085cf6d6a105e5738e 894 SUPERFAMILY SSF82171 208 689 2.35E-14 T 13-10-2018 trd_0009 f2dcc2358ccc8d085cf6d6a105e5738e 894 Gene3D G3DSA:2.120.10.30 322 518 1.2E-6 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_A0626 039235454b9ad6b2d770f29ebb3081a7 141 Pfam PF01951 Archease protein family (MTH1598/TM1083) 3 140 2.1E-34 T 13-10-2018 IPR023572 Archease domain Reactome: R-HSA-6784531 trd_A0626 039235454b9ad6b2d770f29ebb3081a7 141 SUPERFAMILY SSF69819 1 141 4.05E-34 T 13-10-2018 IPR036820 Archease domain superfamily Reactome: R-HSA-6784531 trd_A0626 039235454b9ad6b2d770f29ebb3081a7 141 ProDom PD012969 UPF0211 RIKEN CDNA ENRICHED MALE FULL-LENGTH LIBRARY ZBTB8OS ADULT C43H8.1 10 141 2.0E-18 T 13-10-2018 IPR023572 Archease domain Reactome: R-HSA-6784531 trd_A0626 039235454b9ad6b2d770f29ebb3081a7 141 Gene3D G3DSA:3.55.10.10 1 141 1.5E-34 T 13-10-2018 IPR036820 Archease domain superfamily Reactome: R-HSA-6784531 trd_A0625 bd8ee8f32b1f2ef59f6493b344e76900 486 SUPERFAMILY SSF103365 6 486 3.14E-155 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 trd_A0625 bd8ee8f32b1f2ef59f6493b344e76900 486 Gene3D G3DSA:3.90.1860.10 4 486 1.1E-180 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 trd_A0625 bd8ee8f32b1f2ef59f6493b344e76900 486 Pfam PF01139 tRNA-splicing ligase RtcB 53 486 2.6E-151 T 13-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 trd_1979 a38ead88b590d11cb076df3e80ae1769 108 Pfam PF01909 Nucleotidyltransferase domain 15 85 1.1E-7 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 trd_1979 a38ead88b590d11cb076df3e80ae1769 108 SUPERFAMILY SSF81301 3 101 1.06E-15 T 13-10-2018 trd_1979 a38ead88b590d11cb076df3e80ae1769 108 Gene3D G3DSA:3.30.460.10 5 101 7.6E-13 T 13-10-2018 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Gene3D G3DSA:1.10.530.10 593 746 2.1E-47 T 13-10-2018 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SUPERFAMILY SSF48452 299 465 7.59E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SUPERFAMILY SSF53955 597 742 1.23E-44 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF13432 Tetratricopeptide repeat 381 425 4.2E-4 T 13-10-2018 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF13432 Tetratricopeptide repeat 299 361 4.6E-9 T 13-10-2018 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF01464 Transglycosylase SLT domain 604 713 1.7E-27 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Gene3D G3DSA:1.25.40.10 294 378 2.1E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Gene3D G3DSA:1.25.40.10 170 290 3.5E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Gene3D G3DSA:1.25.40.10 379 480 1.8E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 434 465 430.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 242 275 24.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 327 360 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 293 326 32.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 133 166 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 SUPERFAMILY SSF48452 57 276 1.19E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1531 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF13174 Tetratricopeptide repeat 245 275 0.12 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 Gene3D G3DSA:2.60.40.2600 154 388 2.0E-70 T 13-10-2018 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 SUPERFAMILY SSF49503 156 307 2.59E-48 T 13-10-2018 IPR008972 Cupredoxin trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 83 143 1.1E-11 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 81 266 2.9E-58 T 13-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 202 250 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 SUPERFAMILY SSF46626 277 388 1.1E-13 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 188 253 9.5E-19 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 Gene3D G3DSA:1.10.287.90 58 150 6.1E-26 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 PRINTS PR01166 Cytochrome c oxidase subunit II signature 118 130 4.4E-11 T 13-10-2018 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 PRINTS PR01166 Cytochrome c oxidase subunit II signature 130 150 4.4E-11 T 13-10-2018 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 PRINTS PR01166 Cytochrome c oxidase subunit II signature 239 256 4.4E-11 T 13-10-2018 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 Pfam PF00034 Cytochrome c 282 387 2.4E-7 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0709 7b4aed30ff74de4063567c7ffef06d1d 388 SUPERFAMILY SSF81464 62 148 8.67E-20 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0498 b372c912b67aac0404a6d4c047ad72e8 279 Gene3D G3DSA:3.20.20.410 2 276 3.4E-89 T 13-10-2018 IPR036520 UPF0759 superfamily trd_0498 b372c912b67aac0404a6d4c047ad72e8 279 Pfam PF01904 Protein of unknown function DUF72 18 266 1.4E-60 T 13-10-2018 IPR002763 Protein of unknown function DUF72 trd_0498 b372c912b67aac0404a6d4c047ad72e8 279 SUPERFAMILY SSF117396 2 270 3.66E-72 T 13-10-2018 IPR036520 UPF0759 superfamily trd_A0705 9b758181ab4198c8d327efb329a53604 427 Gene3D G3DSA:3.40.50.720 2 130 1.9E-25 T 13-10-2018 trd_A0705 9b758181ab4198c8d327efb329a53604 427 SUPERFAMILY SSF51735 3 157 5.63E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0705 9b758181ab4198c8d327efb329a53604 427 SUPERFAMILY SSF55347 135 357 3.92E-19 T 13-10-2018 trd_A0705 9b758181ab4198c8d327efb329a53604 427 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 143 212 2.3E-6 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 trd_A0705 9b758181ab4198c8d327efb329a53604 427 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 128 2.5E-18 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF05922 Peptidase inhibitor I9 34 108 2.9E-6 T 13-10-2018 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:3.30.70.80 24 101 3.9E-6 T 13-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:2.60.40.10 535 641 5.0E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 353 363 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 141 152 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 175 185 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 SUPERFAMILY SSF52743 23 391 2.75E-73 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF07705 CARDB 535 627 1.4E-6 T 13-10-2018 IPR011635 CARDB domain trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF07705 CARDB 430 511 4.7E-11 T 13-10-2018 IPR011635 CARDB domain trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:2.60.40.10 422 534 3.5E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:3.40.50.200 102 401 5.5E-80 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 171 184 1.3E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 136 155 1.3E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 352 368 1.3E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_1703 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF00082 Subtilase family 141 387 4.9E-47 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 362 6.5E-126 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 SMART SM01329 5 363 8.3E-187 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 SUPERFAMILY SSF53659 4 369 3.06E-115 T 13-10-2018 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 367 48.843 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 Gene3D G3DSA:3.40.718.10 3 372 1.9E-142 T 13-10-2018 trd_1693 5a84d6d8f608191faa47198baa1027f3 373 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 362 2.3E-147 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.1E-13 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 PRINTS PR00354 7Fe ferredoxin signature 37 54 1.1E-13 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.1E-13 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 42 53 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 Gene3D G3DSA:3.30.70.20 2 83 1.5E-33 T 13-10-2018 trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 SUPERFAMILY SSF54862 3 64 6.52E-23 T 13-10-2018 trd_1422 e1418ac9609de13bac9fdcffdb607db2 83 Pfam PF00037 4Fe-4S binding domain 36 58 2.0E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_A0767 35e1795d75b7f2cabbb7c00ef0bf6ef4 201 PIRSF PIRSF016661 12 197 3.7E-53 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 trd_A0767 35e1795d75b7f2cabbb7c00ef0bf6ef4 201 Gene3D G3DSA:1.10.1760.20 16 190 4.2E-59 T 13-10-2018 trd_A0767 35e1795d75b7f2cabbb7c00ef0bf6ef4 201 Pfam PF02632 BioY family 49 189 1.4E-46 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 19 599 1.6E-177 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Pfam PF01541 GIY-YIG catalytic domain 29 103 8.4E-10 T 13-10-2018 IPR000305 GIY-YIG endonuclease trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Gene3D G3DSA:4.10.860.10 203 255 3.6E-5 T 13-10-2018 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Gene3D G3DSA:1.10.150.20 565 619 4.6E-24 T 13-10-2018 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Pfam PF14520 Helix-hairpin-helix domain 567 619 1.5E-12 T 13-10-2018 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 SUPERFAMILY SSF46600 201 253 1.83E-13 T 13-10-2018 IPR036876 UVR domain superfamily trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Hamap MF_00203 UvrABC system protein C [uvrC]. 14 617 29.985 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Pfam PF02151 UvrB/uvrC motif 215 247 1.0E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 399 552 2.0E-53 T 13-10-2018 IPR001162 UvrC family homology region trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 SUPERFAMILY SSF47781 530 620 1.21E-24 T 13-10-2018 IPR010994 RuvA domain 2-like trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Gene3D G3DSA:3.40.1440.10 13 113 7.5E-33 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 SUPERFAMILY SSF82771 27 111 1.18E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 SMART SM00278 566 585 14.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 SMART SM00278 598 617 1.1 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 SMART SM00465 27 109 2.1E-22 T 13-10-2018 IPR000305 GIY-YIG endonuclease trd_0427 6f94e4de15b830d0f2710b4444b89aa2 625 Gene3D G3DSA:3.30.420.340 392 562 1.9E-61 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Pfam PF01434 Peptidase family M41 482 688 3.7E-73 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 SUPERFAMILY SSF140990 500 694 1.44E-69 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Gene3D G3DSA:1.20.58.760 500 696 5.4E-75 T 13-10-2018 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 35 692 36.556 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Pfam PF06480 FtsH Extracellular 77 194 1.8E-6 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 SMART SM00382 283 422 1.7E-25 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 ProSitePatterns PS00674 AAA-protein family signature. 390 408 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Gene3D G3DSA:3.40.50.300 238 419 8.0E-68 T 13-10-2018 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 202 689 7.5E-213 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 287 419 3.7E-45 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 Gene3D G3DSA:1.10.8.60 421 498 1.1E-29 T 13-10-2018 trd_A0442 bdc818af99bf09878b08528e20b9f2b3 699 SUPERFAMILY SSF52540 244 491 4.22E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:3.40.1110.10 530 655 7.4E-92 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 ProSitePatterns PS01229 Hypothetical cof family signature 2. 724 746 - T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 Pfam PF00702 haloacid dehalogenase-like hydrolase 515 738 8.0E-50 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 269 584 7.9E-96 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:2.70.150.20 312 423 2.7E-39 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 521 527 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 724 743 5.7E-25 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 671 681 5.7E-25 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 519 533 5.7E-25 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 369 383 5.7E-25 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 748 760 5.7E-25 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:3.40.50.1000 500 776 7.4E-92 T 13-10-2018 IPR023214 HAD superfamily trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 Pfam PF00122 E1-E2 ATPase 319 499 1.1E-51 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF81653 322 419 1.44E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF81665 271 800 9.68E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 404 418 1.7E-12 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 385 401 1.7E-12 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 324 340 1.7E-12 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 233 250 1.7E-12 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 304 324 1.7E-12 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 258 827 3.3E-122 T 13-10-2018 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF56784 518 824 1.18E-58 T 13-10-2018 IPR036412 HAD-like superfamily trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 269 827 1.4E-185 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1776 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 292 801 5.1E-82 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0216 7986e8dc2eca693264221427ecf184e9 406 Gene3D G3DSA:3.40.50.150 211 401 7.0E-57 T 13-10-2018 trd_0216 7986e8dc2eca693264221427ecf184e9 406 Gene3D G3DSA:3.40.50.150 82 144 7.2E-14 T 13-10-2018 trd_0216 7986e8dc2eca693264221427ecf184e9 406 SUPERFAMILY SSF50249 16 73 2.11E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0216 7986e8dc2eca693264221427ecf184e9 406 SUPERFAMILY SSF53335 74 399 6.15E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0216 7986e8dc2eca693264221427ecf184e9 406 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 217 394 3.3E-55 T 13-10-2018 trd_0216 7986e8dc2eca693264221427ecf184e9 406 Gene3D G3DSA:2.40.50.140 7 81 1.3E-19 T 13-10-2018 trd_0216 7986e8dc2eca693264221427ecf184e9 406 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 230 399 5.6E-16 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 trd_0216 7986e8dc2eca693264221427ecf184e9 406 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 384 394 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site trd_0216 7986e8dc2eca693264221427ecf184e9 406 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 332 363 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site trd_1934 b36a6e832c94cd4b70be4e92d4598406 254 Gene3D G3DSA:3.40.50.880 18 156 8.3E-7 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1934 b36a6e832c94cd4b70be4e92d4598406 254 SUPERFAMILY SSF52317 16 216 2.08E-21 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1934 b36a6e832c94cd4b70be4e92d4598406 254 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 4 198 9.5E-35 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 Hamap MF_00206 Lipoyl synthase [lipA]. 1 298 133.779 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 SMART SM00729 59 267 4.7E-8 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 Pfam PF04055 Radical SAM superfamily 65 225 4.2E-10 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 SUPERFAMILY SSF102114 24 298 4.84E-57 T 13-10-2018 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 Gene3D G3DSA:3.20.20.70 55 265 7.9E-17 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 TIGRFAM TIGR00510 lipA: lipoyl synthase 10 294 1.9E-99 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 trd_0168 c4eac55c270bfaf4ad3d5a69682c56f7 303 PIRSF PIRSF005963 2 302 5.3E-123 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 trd_1698 64394439982aa199c18c167b35d80b73 186 PIRSF PIRSF005901 1 186 6.0E-65 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP trd_1698 64394439982aa199c18c167b35d80b73 186 SUPERFAMILY SSF50249 128 185 2.91E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1698 64394439982aa199c18c167b35d80b73 186 Hamap MF_00141 Elongation factor P [efp]. 1 185 46.374 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 trd_1698 64394439982aa199c18c167b35d80b73 186 SMART SM01185 67 121 1.5E-25 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 trd_1698 64394439982aa199c18c167b35d80b73 186 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 121 1.6E-21 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 trd_1698 64394439982aa199c18c167b35d80b73 186 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 59 1.4E-20 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like trd_1698 64394439982aa199c18c167b35d80b73 186 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site trd_1698 64394439982aa199c18c167b35d80b73 186 Gene3D G3DSA:2.40.50.140 65 126 2.9E-24 T 13-10-2018 trd_1698 64394439982aa199c18c167b35d80b73 186 Gene3D G3DSA:2.30.30.30 1 62 9.8E-25 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 trd_1698 64394439982aa199c18c167b35d80b73 186 SMART SM00841 129 184 1.7E-32 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 trd_1698 64394439982aa199c18c167b35d80b73 186 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 3.4E-72 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 trd_1698 64394439982aa199c18c167b35d80b73 186 Gene3D G3DSA:2.40.50.140 128 185 5.9E-27 T 13-10-2018 trd_1698 64394439982aa199c18c167b35d80b73 186 Pfam PF09285 Elongation factor P, C-terminal 129 184 4.4E-26 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 trd_1698 64394439982aa199c18c167b35d80b73 186 SUPERFAMILY SSF50104 1 63 5.01E-18 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily trd_1698 64394439982aa199c18c167b35d80b73 186 SUPERFAMILY SSF50249 65 129 1.67E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 Gene3D G3DSA:2.30.30.90 155 236 2.3E-13 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 SUPERFAMILY SSF50037 156 226 5.26E-11 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 74 142 8.0E-28 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 SUPERFAMILY SSF46785 14 73 1.12E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 SMART SM00529 35 134 2.1E-40 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 14 71 6.3E-17 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 Gene3D G3DSA:1.10.10.10 12 81 4.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 SUPERFAMILY SSF47979 74 148 1.57E-23 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 Pfam PF04023 FeoA domain 155 226 3.2E-17 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 SMART SM00899 154 227 1.8E-13 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 trd_1195 1bdd7a3ecf5d439d0639b20dc82190ab 238 Gene3D G3DSA:1.10.60.10 83 148 6.0E-26 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 trd_0303 5bfef518fa6b3cf717c9fd4145e19c9b 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 218 1.1E-85 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 trd_0303 5bfef518fa6b3cf717c9fd4145e19c9b 232 Gene3D G3DSA:3.40.1080.10 1 217 7.2E-76 T 13-10-2018 trd_0303 5bfef518fa6b3cf717c9fd4145e19c9b 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 17 32 - T 13-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 trd_0303 5bfef518fa6b3cf717c9fd4145e19c9b 232 SUPERFAMILY SSF100950 2 222 2.04E-71 T 13-10-2018 IPR037171 NagB/RpiA transferase-like trd_0303 5bfef518fa6b3cf717c9fd4145e19c9b 232 Pfam PF01144 Coenzyme A transferase 6 217 5.6E-58 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 trd_0303 5bfef518fa6b3cf717c9fd4145e19c9b 232 SMART SM00882 5 218 2.8E-65 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 trd_0886 7170e06e797ab4cae14900a22a4796e1 430 Gene3D G3DSA:1.20.1250.20 227 418 1.9E-16 T 13-10-2018 trd_0886 7170e06e797ab4cae14900a22a4796e1 430 SUPERFAMILY SSF103473 19 413 4.05E-41 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0886 7170e06e797ab4cae14900a22a4796e1 430 Gene3D G3DSA:1.20.1250.20 14 204 6.9E-19 T 13-10-2018 trd_0886 7170e06e797ab4cae14900a22a4796e1 430 Pfam PF07690 Major Facilitator Superfamily 27 339 2.3E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 SUPERFAMILY SSF51604 96 390 9.96E-70 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 Pfam PF13378 Enolase C-terminal domain-like 163 386 1.4E-51 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 108 3.1E-15 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 Gene3D G3DSA:3.30.390.10 1 105 8.2E-25 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 Gene3D G3DSA:3.20.20.120 106 378 3.0E-92 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 SMART SM00922 159 266 1.8E-16 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_1958 c8be20c155551bf3f947cf626b5d11eb 399 SUPERFAMILY SSF54826 1 112 2.86E-25 T 13-10-2018 trd_A0473 44fa29d10c81ea290fb9f65080199758 437 Gene3D G3DSA:1.10.3210.10 1 100 1.5E-8 T 13-10-2018 trd_A0473 44fa29d10c81ea290fb9f65080199758 437 Pfam PF01966 HD domain 5 89 4.4E-7 T 13-10-2018 IPR006674 HD domain trd_A0473 44fa29d10c81ea290fb9f65080199758 437 SUPERFAMILY SSF109604 5 89 3.35E-8 T 13-10-2018 trd_A0473 44fa29d10c81ea290fb9f65080199758 437 TIGRFAM TIGR02578 cas_TM1811_Csm1: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE 7 378 2.2E-53 T 13-10-2018 IPR013408 CRISPR-associated protein Csm1 trd_1194 1479e653137638e9c55d551d9d91cce2 561 Pfam PF01368 DHH family 77 201 6.1E-7 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 trd_1194 1479e653137638e9c55d551d9d91cce2 561 SUPERFAMILY SSF64182 51 442 7.85E-97 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily trd_1194 1479e653137638e9c55d551d9d91cce2 561 Gene3D G3DSA:3.10.310.30 318 439 1.6E-29 T 13-10-2018 trd_1194 1479e653137638e9c55d551d9d91cce2 561 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 553 6.8E-128 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 trd_1194 1479e653137638e9c55d551d9d91cce2 561 Gene3D G3DSA:3.90.1640.30 53 317 1.6E-69 T 13-10-2018 trd_1194 1479e653137638e9c55d551d9d91cce2 561 Pfam PF02272 DHHA1 domain 315 434 4.1E-14 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 trd_A0826 2d582f78a958c02ac1d13af4acf9d00f 264 Gene3D G3DSA:1.10.12.10 207 263 2.9E-22 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal trd_A0826 2d582f78a958c02ac1d13af4acf9d00f 264 Gene3D G3DSA:3.90.226.10 11 205 1.3E-64 T 13-10-2018 trd_A0826 2d582f78a958c02ac1d13af4acf9d00f 264 SUPERFAMILY SSF52096 6 263 2.67E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0826 2d582f78a958c02ac1d13af4acf9d00f 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 262 2.1E-55 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 Pfam PF01966 HD domain 37 159 4.2E-24 T 13-10-2018 IPR006674 HD domain trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 Gene3D G3DSA:3.30.450.40 219 371 6.0E-16 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 SUPERFAMILY SSF109604 22 197 7.85E-43 T 13-10-2018 trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 Pfam PF13185 GAF domain 240 368 1.5E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 SMART SM00471 33 168 7.6E-16 T 13-10-2018 IPR003607 HD/PDEase domain trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 TIGRFAM TIGR00277 HDIG: HDIG domain 35 127 6.3E-9 T 13-10-2018 IPR006675 HDIG domain trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 SUPERFAMILY SSF55781 220 367 1.4E-14 T 13-10-2018 trd_1091 ca23c3d74ccabf57627c40ba67c77d29 431 Gene3D G3DSA:1.10.3210.10 13 206 2.0E-72 T 13-10-2018 trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 ProSitePatterns PS00211 ABC transporters family signature. 624 638 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SUPERFAMILY SSF51126 35 405 2.79E-54 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 92 120 1200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 214 235 20.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 289 310 4100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 192 213 63.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 171 191 3400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 236 261 160.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00710 262 283 330.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SUPERFAMILY SSF52540 493 704 2.46E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00382 523 700 2.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 188 228 7.2E-5 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 208 249 4.6E-6 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 39 420 3.3E-127 T 13-10-2018 IPR026464 Nitrous oxide reductase family maturation protein NosD trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 Gene3D G3DSA:2.160.20.10 32 357 4.6E-30 T 13-10-2018 IPR012334 Pectin lyase fold trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00722 46 190 8.6E-4 T 13-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 SMART SM00722 196 367 0.18 T 13-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 Pfam PF05048 Periplasmic copper-binding protein (NosD) 160 385 5.1E-51 T 13-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 Pfam PF00005 ABC transporter 514 652 6.7E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0192 d13f78a38bc1b01c84152c9a10c05bf7 783 Gene3D G3DSA:3.40.50.300 498 730 4.7E-60 T 13-10-2018 trd_1317 ce09d1dfa7811986f00422f74562d08f 553 Pfam PF13520 Amino acid permease 44 491 2.3E-19 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_1317 ce09d1dfa7811986f00422f74562d08f 553 PIRSF PIRSF006060 13 548 1.0E-32 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_1317 ce09d1dfa7811986f00422f74562d08f 553 Gene3D G3DSA:1.20.1740.10 29 531 1.0E-22 T 13-10-2018 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Gene3D G3DSA:3.30.420.360 389 752 4.8E-115 T 13-10-2018 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Gene3D G3DSA:3.90.870.50 15 368 1.9E-142 T 13-10-2018 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Gene3D G3DSA:3.30.420.350 490 740 4.8E-115 T 13-10-2018 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Pfam PF00814 Glycoprotease family 607 728 1.6E-6 T 13-10-2018 IPR000905 Gcp-like domain trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Gene3D G3DSA:3.30.110.120 261 377 1.9E-142 T 13-10-2018 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 15 751 6.6E-230 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 SUPERFAMILY SSF55821 183 401 2.72E-42 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 SUPERFAMILY SSF53067 438 753 2.59E-10 T 13-10-2018 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 ProSitePatterns PS00150 Acylphosphatase signature 1. 17 27 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Pfam PF07503 HypF finger 115 148 8.4E-18 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Pfam PF07503 HypF finger 165 197 7.0E-16 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Pfam PF01300 Telomere recombination 219 389 8.9E-42 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 PIRSF PIRSF006256 8 758 4.8E-265 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 Pfam PF00708 Acylphosphatase 14 96 2.3E-24 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 trd_1863 3a936bf4d21e95936b6117fc6b4c2aa5 758 SUPERFAMILY SSF54975 10 97 3.05E-26 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 trd_0918 b49a1a71203655c01877c8884483836a 422 SMART SM00996 7 421 2.5E-146 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 SUPERFAMILY SSF51735 189 351 1.46E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0918 b49a1a71203655c01877c8884483836a 422 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 189 349 2.6E-56 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 8 141 6.6E-33 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 Gene3D G3DSA:3.40.50.720 191 350 8.5E-178 T 13-10-2018 trd_0918 b49a1a71203655c01877c8884483836a 422 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 8 422 2.5E-194 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 3 422 49.199 T 13-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 trd_0918 b49a1a71203655c01877c8884483836a 422 Gene3D G3DSA:3.40.50.1480 10 411 8.5E-178 T 13-10-2018 trd_0918 b49a1a71203655c01877c8884483836a 422 SMART SM00997 189 350 2.6E-110 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 211 227 - T 13-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 PIRSF PIRSF001109 2 422 2.9E-186 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 SUPERFAMILY SSF52283 6 422 2.1E-95 T 13-10-2018 trd_0918 b49a1a71203655c01877c8884483836a 422 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 143 416 8.3E-28 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_0918 b49a1a71203655c01877c8884483836a 422 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 79 93 - T 13-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 trd_1165 f1653f17021c193764d867570fd28551 979 SUPERFAMILY SSF46548 546 648 1.41E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_1165 f1653f17021c193764d867570fd28551 979 SUPERFAMILY SSF55103 285 533 1.54E-53 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 trd_1165 f1653f17021c193764d867570fd28551 979 SUPERFAMILY SSF56176 24 280 6.54E-51 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_1165 f1653f17021c193764d867570fd28551 979 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 630 641 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1165 f1653f17021c193764d867570fd28551 979 Pfam PF02913 FAD linked oxidases, C-terminal domain 280 529 9.2E-50 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 trd_1165 f1653f17021c193764d867570fd28551 979 Pfam PF01565 FAD binding domain 56 192 4.7E-41 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 trd_1165 f1653f17021c193764d867570fd28551 979 Gene3D G3DSA:3.30.70.2740 409 489 1.3E-5 T 13-10-2018 trd_1165 f1653f17021c193764d867570fd28551 979 Pfam PF13534 4Fe-4S dicluster domain 569 645 1.2E-8 T 13-10-2018 trd_1165 f1653f17021c193764d867570fd28551 979 Gene3D G3DSA:1.10.45.10 495 530 3.7E-5 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 trd_1165 f1653f17021c193764d867570fd28551 979 Pfam PF02754 Cysteine-rich domain 886 954 0.11 T 13-10-2018 IPR004017 Cysteine-rich domain trd_1165 f1653f17021c193764d867570fd28551 979 Pfam PF02754 Cysteine-rich domain 745 822 1.9E-8 T 13-10-2018 IPR004017 Cysteine-rich domain trd_1165 f1653f17021c193764d867570fd28551 979 Gene3D G3DSA:3.30.465.40 28 209 2.5E-43 T 13-10-2018 trd_0531 042980fc6107fabb597ae7b0dd248960 566 Gene3D G3DSA:2.30.40.10 5 479 5.7E-231 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0531 042980fc6107fabb597ae7b0dd248960 566 SUPERFAMILY SSF51338 5 473 1.96E-43 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0531 042980fc6107fabb597ae7b0dd248960 566 Gene3D G3DSA:3.20.20.140 131 564 5.7E-231 T 13-10-2018 trd_0531 042980fc6107fabb597ae7b0dd248960 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 4.2E-38 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0531 042980fc6107fabb597ae7b0dd248960 566 SUPERFAMILY SSF51556 131 565 1.15E-137 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0531 042980fc6107fabb597ae7b0dd248960 566 Hamap MF_01953 Urease subunit alpha [ureC]. 3 566 44.979 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0531 042980fc6107fabb597ae7b0dd248960 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 565 3.3E-205 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0531 042980fc6107fabb597ae7b0dd248960 566 Pfam PF01979 Amidohydrolase family 127 452 2.2E-52 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_0531 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 8.5E-25 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0531 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 331 347 8.5E-25 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0531 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 8.5E-25 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0531 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 292 309 8.5E-25 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_1602 13b185306d60ab5f8efe6a55beaee59a 357 SUPERFAMILY SSF53448 1 280 6.29E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1602 13b185306d60ab5f8efe6a55beaee59a 357 Pfam PF01050 Mannose-6-phosphate isomerase 316 354 8.1E-8 T 13-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 trd_1602 13b185306d60ab5f8efe6a55beaee59a 357 Pfam PF00483 Nucleotidyl transferase 4 285 1.5E-39 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 trd_1602 13b185306d60ab5f8efe6a55beaee59a 357 Gene3D G3DSA:3.90.550.10 1 351 4.2E-114 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1602 13b185306d60ab5f8efe6a55beaee59a 357 SUPERFAMILY SSF159283 285 349 2.48E-16 T 13-10-2018 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 SUPERFAMILY SSF52499 2 180 1.23E-63 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 Pfam PF00857 Isochorismatase family 4 172 2.6E-49 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 Gene3D G3DSA:3.40.50.850 1 189 4.8E-64 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 PRINTS PR01398 Isochorismatase signature 79 101 1.2E-8 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 PRINTS PR01398 Isochorismatase signature 135 153 1.2E-8 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 PRINTS PR01398 Isochorismatase signature 153 170 1.2E-8 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 trd_A0009 4a05273eae385685ee4d52d959c9d76f 189 PRINTS PR01398 Isochorismatase signature 34 51 1.2E-8 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 Pfam PF16360 GTP-binding GTPase Middle Region 109 188 3.6E-31 T 13-10-2018 IPR032305 GTP-binding protein, middle domain trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 Gene3D G3DSA:3.40.50.300 193 365 9.1E-44 T 13-10-2018 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 Pfam PF01926 50S ribosome-binding GTPase 196 314 3.5E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 217 235 4.5E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 196 216 4.5E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 263 281 4.5E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 SUPERFAMILY SSF52540 193 360 5.92E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 Pfam PF13167 GTP-binding GTPase N-terminal 20 107 2.6E-30 T 13-10-2018 IPR025121 GTPase HflX, N-terminal trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 Gene3D G3DSA:3.40.50.11060 13 133 7.2E-41 T 13-10-2018 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 3 358 3.2E-142 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 PIRSF PIRSF006809 1 419 4.4E-156 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 trd_0861 f76195c7f3324df12b49110f9f3a70d4 424 Hamap MF_00900 GTPase HflX [hflX]. 22 390 49.629 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 Pfam PF00285 Citrate synthase, C-terminal domain 1 133 3.2E-38 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 Gene3D G3DSA:1.10.230.10 1 97 3.6E-38 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 PRINTS PR00143 Citrate synthase signature 83 99 8.2E-12 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 PRINTS PR00143 Citrate synthase signature 22 42 8.2E-12 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 PRINTS PR00143 Citrate synthase signature 103 117 8.2E-12 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 SUPERFAMILY SSF48256 1 140 3.14E-45 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 ProSitePatterns PS00480 Citrate synthase signature. 29 42 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 trd_A0175 d2b439d0845f2afd73c382129ac0b9ce 144 Gene3D G3DSA:1.10.580.10 98 130 3.6E-38 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 trd_A0929 ebcebb67ed30b350543c467149170f77 516 PIRSF PIRSF500125 1 507 7.1E-239 T 13-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein trd_A0929 ebcebb67ed30b350543c467149170f77 516 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 6 270 5.0E-96 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal trd_A0929 ebcebb67ed30b350543c467149170f77 516 Gene3D G3DSA:1.10.3140.10 5 140 6.1E-44 T 13-10-2018 trd_A0929 ebcebb67ed30b350543c467149170f77 516 SUPERFAMILY SSF56645 4 271 7.94E-83 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_A0929 ebcebb67ed30b350543c467149170f77 516 PIRSF PIRSF000331 2 490 1.4E-187 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH trd_A0929 ebcebb67ed30b350543c467149170f77 516 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 277 478 6.8E-61 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal trd_A0929 ebcebb67ed30b350543c467149170f77 516 Gene3D G3DSA:1.20.140.10 272 467 7.1E-62 T 13-10-2018 trd_A0929 ebcebb67ed30b350543c467149170f77 516 SUPERFAMILY SSF47203 261 478 2.09E-43 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_A0929 ebcebb67ed30b350543c467149170f77 516 Gene3D G3DSA:2.40.110.10 142 271 2.5E-43 T 13-10-2018 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 Gene3D G3DSA:3.40.50.1980 46 198 1.2E-50 T 13-10-2018 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00691 Adhesin B signature 70 88 1.9E-20 T 13-10-2018 IPR006129 Adhesin B GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00691 Adhesin B signature 262 279 1.9E-20 T 13-10-2018 IPR006129 Adhesin B GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00691 Adhesin B signature 213 230 1.9E-20 T 13-10-2018 IPR006129 Adhesin B GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00691 Adhesin B signature 45 66 1.9E-20 T 13-10-2018 IPR006129 Adhesin B GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00691 Adhesin B signature 155 174 1.9E-20 T 13-10-2018 IPR006129 Adhesin B GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 SUPERFAMILY SSF53807 42 322 8.83E-90 T 13-10-2018 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 Gene3D G3DSA:3.40.50.1980 199 322 8.9E-40 T 13-10-2018 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 Pfam PF01297 Zinc-uptake complex component A periplasmic 48 319 1.3E-85 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00690 Adhesin family signature 76 89 9.6E-23 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00690 Adhesin family signature 213 234 9.6E-23 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00690 Adhesin family signature 45 63 9.6E-23 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00690 Adhesin family signature 266 284 9.6E-23 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 trd_A0183 f86f9f3343350f2497c870bfd164b7a0 323 PRINTS PR00690 Adhesin family signature 89 106 9.6E-23 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 trd_0160 e578926cc05e1571730b0e0e6713c6d1 80 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 11 35 - T 13-10-2018 IPR001455 TusA-like domain trd_0160 e578926cc05e1571730b0e0e6713c6d1 80 Pfam PF01206 Sulfurtransferase TusA 10 77 5.1E-22 T 13-10-2018 IPR001455 TusA-like domain trd_0160 e578926cc05e1571730b0e0e6713c6d1 80 SUPERFAMILY SSF64307 5 78 1.96E-23 T 13-10-2018 IPR036868 TusA-like domain superfamily trd_0160 e578926cc05e1571730b0e0e6713c6d1 80 Gene3D G3DSA:3.30.110.40 4 80 1.8E-30 T 13-10-2018 IPR036868 TusA-like domain superfamily trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:1.10.3710.10 345 441 6.0E-32 T 13-10-2018 trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Pfam PF12002 MgsA AAA+ ATPase C terminal 267 432 1.7E-69 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:3.40.50.300 9 167 7.5E-46 T 13-10-2018 trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Pfam PF16193 AAA C-terminal domain 194 266 3.9E-23 T 13-10-2018 IPR032423 AAA C-terminal domain trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 SUPERFAMILY SSF48019 252 434 9.86E-76 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:1.20.272.10 240 344 2.0E-47 T 13-10-2018 trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 SUPERFAMILY SSF52540 13 238 8.14E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:1.10.8.60 169 239 1.8E-17 T 13-10-2018 trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 56 165 8.2E-18 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_0432 1d28e1d6accdc6a889874f0c867b79e2 450 SMART SM00382 52 169 3.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0615 a5d2ae073a1dc254625a8e41249af757 546 SUPERFAMILY SSF51126 160 524 5.02E-5 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0615 a5d2ae073a1dc254625a8e41249af757 546 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 19 66 9.9E-12 T 13-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal trd_0542 6948c0026575c52c29712a08e7536eb4 258 SUPERFAMILY SSF53448 1 236 3.82E-69 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0542 6948c0026575c52c29712a08e7536eb4 258 Gene3D G3DSA:3.90.550.10 1 241 6.4E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0542 6948c0026575c52c29712a08e7536eb4 258 Pfam PF00483 Nucleotidyl transferase 2 233 3.2E-49 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 11 151 7.3E-50 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 Gene3D G3DSA:3.40.50.1370 11 140 6.1E-116 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 56 63 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 11 312 9.5E-120 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 265 274 1.2E-27 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 138 149 1.2E-27 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 277 300 1.2E-27 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 56 75 1.2E-27 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 9 313 75.291 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 309 1.6E-48 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 127 141 3.2E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 87 100 3.2E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 291 302 3.2E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 54 68 3.2E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 3.2E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 SUPERFAMILY SSF53671 10 314 1.7E-101 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 trd_1429 9c51f254add38950b90c0cb8d77ee029 321 Gene3D G3DSA:3.40.50.1370 141 308 6.1E-116 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 trd_1201 8de052e3637271b92282b67b28a3b251 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 110 306 2.3E-50 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1201 8de052e3637271b92282b67b28a3b251 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 313 388 1.2E-11 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_1201 8de052e3637271b92282b67b28a3b251 423 SUPERFAMILY SSF57716 12 48 5.7E-10 T 13-10-2018 trd_1201 8de052e3637271b92282b67b28a3b251 423 Gene3D G3DSA:3.30.50.30 5 52 8.7E-21 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily trd_1201 8de052e3637271b92282b67b28a3b251 423 Gene3D G3DSA:3.40.50.300 59 311 3.8E-107 T 13-10-2018 trd_1201 8de052e3637271b92282b67b28a3b251 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 407 3.0E-192 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 trd_1201 8de052e3637271b92282b67b28a3b251 423 Gene3D G3DSA:1.10.8.60 312 417 1.7E-34 T 13-10-2018 trd_1201 8de052e3637271b92282b67b28a3b251 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 5 411 51.653 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 trd_1201 8de052e3637271b92282b67b28a3b251 423 SMART SM00382 110 273 2.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1201 8de052e3637271b92282b67b28a3b251 423 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 170 185 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 trd_1201 8de052e3637271b92282b67b28a3b251 423 SMART SM01086 313 399 9.9E-28 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_1201 8de052e3637271b92282b67b28a3b251 423 SMART SM00994 11 51 1.6E-21 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 trd_1201 8de052e3637271b92282b67b28a3b251 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 2.1E-21 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 trd_1201 8de052e3637271b92282b67b28a3b251 423 SUPERFAMILY SSF52540 64 398 6.88E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 SUPERFAMILY SSF102114 135 368 2.09E-52 T 13-10-2018 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Pfam PF01938 TRAM domain 373 444 2.1E-5 T 13-10-2018 IPR002792 TRAM domain trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 440 3.6E-127 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Pfam PF00919 Uncharacterized protein family UPF0004 6 89 5.3E-23 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 SMART SM00729 142 361 2.7E-51 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Gene3D G3DSA:3.80.30.20 140 375 6.1E-76 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 5 443 56.046 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Gene3D G3DSA:2.40.50.140 376 451 2.2E-15 T 13-10-2018 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Gene3D G3DSA:3.40.50.12160 5 122 2.4E-27 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 441 6.1E-112 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 Pfam PF04055 Radical SAM superfamily 147 319 4.4E-26 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_1243 33928edc84948c951ab06a5c5cb7fdbf 470 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 146 166 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 trd_1362 559ed793a3e28bc494c8d45eb87cc138 125 Pfam PF01638 HxlR-like helix-turn-helix 20 107 7.0E-27 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type trd_1362 559ed793a3e28bc494c8d45eb87cc138 125 SMART SM00418 16 96 0.0088 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1362 559ed793a3e28bc494c8d45eb87cc138 125 SUPERFAMILY SSF46785 8 110 2.86E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1362 559ed793a3e28bc494c8d45eb87cc138 125 Gene3D G3DSA:1.10.10.10 2 125 1.6E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0595 611830dab02b7d255e31ee07b3ced72c 338 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 76 164 8.8E-25 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 trd_0595 611830dab02b7d255e31ee07b3ced72c 338 SUPERFAMILY SSF54675 57 165 6.67E-30 T 13-10-2018 trd_0595 611830dab02b7d255e31ee07b3ced72c 338 Gene3D G3DSA:3.90.1170.20 70 330 7.1E-113 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 trd_0595 611830dab02b7d255e31ee07b3ced72c 338 SUPERFAMILY SSF51690 166 332 4.32E-64 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 trd_0595 611830dab02b7d255e31ee07b3ced72c 338 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 166 331 3.0E-66 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 trd_0595 611830dab02b7d255e31ee07b3ced72c 338 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 67 332 6.5E-104 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 trd_0595 611830dab02b7d255e31ee07b3ced72c 338 Gene3D G3DSA:3.20.20.70 180 322 7.1E-113 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0969 350fb0fa570ce68fc5f09407f9e0b2d3 124 SUPERFAMILY SSF53137 11 122 3.05E-53 T 13-10-2018 trd_0969 350fb0fa570ce68fc5f09407f9e0b2d3 124 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 124 2.6E-48 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0969 350fb0fa570ce68fc5f09407f9e0b2d3 124 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 10 124 4.0E-42 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0969 350fb0fa570ce68fc5f09407f9e0b2d3 124 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 7 124 29.486 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0969 350fb0fa570ce68fc5f09407f9e0b2d3 124 Gene3D G3DSA:3.30.420.100 7 124 8.8E-47 T 13-10-2018 trd_1724 ebbc595f76674315dbe02a9edada68d3 231 Gene3D G3DSA:3.90.550.10 2 230 1.3E-80 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1724 ebbc595f76674315dbe02a9edada68d3 231 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 100 107 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 trd_1724 ebbc595f76674315dbe02a9edada68d3 231 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4 223 5.8E-67 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 trd_1724 ebbc595f76674315dbe02a9edada68d3 231 SUPERFAMILY SSF53448 4 224 5.84E-56 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1724 ebbc595f76674315dbe02a9edada68d3 231 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 225 7.0E-64 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 trd_1724 ebbc595f76674315dbe02a9edada68d3 231 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 2 223 40.571 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 Gene3D G3DSA:3.30.420.10 83 256 3.0E-46 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 SMART SM00465 292 374 2.8E-18 T 13-10-2018 IPR000305 GIY-YIG endonuclease trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 Gene3D G3DSA:3.40.1440.10 281 378 4.6E-27 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 Pfam PF02151 UvrB/uvrC motif 484 516 2.6E-6 T 13-10-2018 IPR001943 UVR domain GO:0005515 trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 SUPERFAMILY SSF82771 292 374 4.32E-19 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 SUPERFAMILY SSF46600 469 513 6.67E-6 T 13-10-2018 IPR036876 UVR domain superfamily trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 SMART SM00479 85 251 9.4E-47 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 85 253 1.2E-33 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 SUPERFAMILY SSF53098 83 254 1.97E-51 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 Pfam PF00929 Exonuclease 87 242 7.5E-33 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_0207 2ec6cb051f8f58ff7f6c7856d9f0bfcd 693 Pfam PF01541 GIY-YIG catalytic domain 294 369 1.0E-7 T 13-10-2018 IPR000305 GIY-YIG endonuclease trd_0843 49bcb2424693d0951786a15bd5f68ca5 378 Gene3D G3DSA:3.40.50.2000 8 181 3.3E-15 T 13-10-2018 trd_0843 49bcb2424693d0951786a15bd5f68ca5 378 Pfam PF00534 Glycosyl transferases group 1 194 348 1.5E-27 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0843 49bcb2424693d0951786a15bd5f68ca5 378 Pfam PF13439 Glycosyltransferase Family 4 16 171 1.2E-18 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_0843 49bcb2424693d0951786a15bd5f68ca5 378 SUPERFAMILY SSF53756 7 371 1.7E-75 T 13-10-2018 trd_0843 49bcb2424693d0951786a15bd5f68ca5 378 Gene3D G3DSA:3.40.50.2000 182 370 2.4E-44 T 13-10-2018 trd_0771 e910f73f889b81648928de6b63192ee0 328 Pfam PF02272 DHHA1 domain 242 313 1.4E-8 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 trd_0771 e910f73f889b81648928de6b63192ee0 328 Gene3D G3DSA:3.10.310.30 205 318 7.1E-22 T 13-10-2018 trd_0771 e910f73f889b81648928de6b63192ee0 328 SUPERFAMILY SSF64182 11 301 6.93E-49 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily trd_0771 e910f73f889b81648928de6b63192ee0 328 Gene3D G3DSA:3.90.1640.10 1 204 8.4E-50 T 13-10-2018 trd_0771 e910f73f889b81648928de6b63192ee0 328 Pfam PF01368 DHH family 13 157 1.5E-8 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 trd_1756 91d57e38f3fad721a4e0834d7b420793 489 Gene3D G3DSA:3.90.1300.10 5 486 1.5E-207 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_1756 91d57e38f3fad721a4e0834d7b420793 489 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 477 1.6E-188 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_1756 91d57e38f3fad721a4e0834d7b420793 489 ProSitePatterns PS00571 Amidases signature. 153 184 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 trd_1756 91d57e38f3fad721a4e0834d7b420793 489 Pfam PF01425 Amidase 26 466 1.4E-164 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_1756 91d57e38f3fad721a4e0834d7b420793 489 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 477 95.825 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_1756 91d57e38f3fad721a4e0834d7b420793 489 SUPERFAMILY SSF75304 5 484 9.81E-175 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_0523 250c63636adfa84f922abf2269b4137b 389 SMART SM00382 55 238 1.9E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0523 250c63636adfa84f922abf2269b4137b 389 SUPERFAMILY SSF52540 30 269 1.19E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0523 250c63636adfa84f922abf2269b4137b 389 Gene3D G3DSA:3.40.50.300 30 248 6.8E-67 T 13-10-2018 trd_0523 250c63636adfa84f922abf2269b4137b 389 SUPERFAMILY SSF50331 265 386 1.02E-15 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal trd_0523 250c63636adfa84f922abf2269b4137b 389 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 61 387 2.7E-121 T 13-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 trd_0523 250c63636adfa84f922abf2269b4137b 389 Gene3D G3DSA:2.40.50.940 249 311 7.4E-16 T 13-10-2018 trd_0523 250c63636adfa84f922abf2269b4137b 389 Pfam PF08402 TOBE domain 305 387 5.6E-14 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 trd_0523 250c63636adfa84f922abf2269b4137b 389 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0523 250c63636adfa84f922abf2269b4137b 389 Gene3D G3DSA:2.40.50.140 312 360 7.4E-16 T 13-10-2018 trd_0523 250c63636adfa84f922abf2269b4137b 389 Pfam PF00005 ABC transporter 47 188 2.0E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1729 30f76ac57a86ce58acca53de9cf404a0 133 Gene3D G3DSA:3.90.180.10 1 71 2.2E-8 T 13-10-2018 trd_1729 30f76ac57a86ce58acca53de9cf404a0 133 SUPERFAMILY SSF50129 20 65 4.38E-7 T 13-10-2018 IPR011032 GroES-like superfamily trd_1523 f0975dc072e41b693d5d2073378abc1c 557 PIRSF PIRSF002741 24 551 1.0E-75 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1523 f0975dc072e41b693d5d2073378abc1c 557 Gene3D G3DSA:3.40.190.10 232 543 1.8E-92 T 13-10-2018 trd_1523 f0975dc072e41b693d5d2073378abc1c 557 SUPERFAMILY SSF53850 72 555 1.52E-110 T 13-10-2018 trd_1523 f0975dc072e41b693d5d2073378abc1c 557 Gene3D G3DSA:3.10.105.10 317 533 1.8E-92 T 13-10-2018 trd_1523 f0975dc072e41b693d5d2073378abc1c 557 Gene3D G3DSA:3.90.76.10 85 231 1.8E-92 T 13-10-2018 trd_1523 f0975dc072e41b693d5d2073378abc1c 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 119 479 2.0E-71 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1618 184d8dc035ac23ca95344829e19dad95 81 Gene3D G3DSA:1.10.1200.10 1 81 4.7E-31 T 13-10-2018 IPR036736 ACP-like superfamily trd_1618 184d8dc035ac23ca95344829e19dad95 81 SUPERFAMILY SSF47336 4 79 1.11E-25 T 13-10-2018 IPR036736 ACP-like superfamily trd_1618 184d8dc035ac23ca95344829e19dad95 81 Pfam PF00550 Phosphopantetheine attachment site 7 74 2.1E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain trd_1618 184d8dc035ac23ca95344829e19dad95 81 ProSitePatterns PS00012 Phosphopantetheine attachment site. 33 48 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site trd_1618 184d8dc035ac23ca95344829e19dad95 81 SMART SM00823 Phosphopantetheine attachment site 6 78 5.4E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 trd_1618 184d8dc035ac23ca95344829e19dad95 81 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 3 77 1.6E-33 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 trd_1618 184d8dc035ac23ca95344829e19dad95 81 Hamap MF_01217 Acyl carrier protein [acpP]. 4 78 22.575 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 trd_0564 e2a7542561ab806f025d0aef02117f36 452 Pfam PF03448 MgtE intracellular N domain 35 132 2.6E-19 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 TIGRFAM TIGR00400 mgtE: magnesium transporter 11 449 5.6E-110 T 13-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 trd_0564 e2a7542561ab806f025d0aef02117f36 452 SMART SM00924 31 134 1.1E-22 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 Pfam PF01769 Divalent cation transporter 320 441 1.7E-27 T 13-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 trd_0564 e2a7542561ab806f025d0aef02117f36 452 Pfam PF00571 CBS domain 198 252 8.0E-13 T 13-10-2018 IPR000644 CBS domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 Pfam PF00571 CBS domain 138 190 1.3E-4 T 13-10-2018 IPR000644 CBS domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 SUPERFAMILY SSF54631 133 270 7.83E-34 T 13-10-2018 trd_0564 e2a7542561ab806f025d0aef02117f36 452 Gene3D G3DSA:1.10.357.20 272 449 3.9E-54 T 13-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 SUPERFAMILY SSF161093 278 448 6.67E-48 T 13-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 trd_0564 e2a7542561ab806f025d0aef02117f36 452 Gene3D G3DSA:3.10.580.10 131 258 1.3E-43 T 13-10-2018 trd_0564 e2a7542561ab806f025d0aef02117f36 452 SMART SM00116 205 253 3.8E-10 T 13-10-2018 IPR000644 CBS domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 SMART SM00116 141 194 2.9 T 13-10-2018 IPR000644 CBS domain trd_0564 e2a7542561ab806f025d0aef02117f36 452 Gene3D G3DSA:1.25.60.10 2 129 1.7E-18 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily trd_0564 e2a7542561ab806f025d0aef02117f36 452 SUPERFAMILY SSF158791 10 131 8.11E-21 T 13-10-2018 trd_0890 69a6f380c812b5beba82a6ce5a81eb01 96 Gene3D G3DSA:3.30.70.1120 1 94 3.4E-28 T 13-10-2018 IPR036746 TT1725-like superfamily trd_0890 69a6f380c812b5beba82a6ce5a81eb01 96 Pfam PF04456 Protein of unknown function (DUF503) 2 88 9.9E-32 T 13-10-2018 IPR007546 Protein of unknown function DUF503 trd_0890 69a6f380c812b5beba82a6ce5a81eb01 96 SUPERFAMILY SSF103007 2 93 7.72E-28 T 13-10-2018 IPR036746 TT1725-like superfamily trd_A0389 509a94d8045ef82d2154a9bf67c9d494 454 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 37 274 3.8E-57 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related trd_A0389 509a94d8045ef82d2154a9bf67c9d494 454 SUPERFAMILY SSF49503 351 453 9.34E-14 T 13-10-2018 IPR008972 Cupredoxin trd_A0389 509a94d8045ef82d2154a9bf67c9d494 454 Gene3D G3DSA:2.60.40.420 344 453 1.3E-16 T 13-10-2018 IPR008972 Cupredoxin trd_1238 9b3f7499c31dceabfe3f16ea4bd672fb 222 Gene3D G3DSA:1.10.10.10 112 155 5.1E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1238 9b3f7499c31dceabfe3f16ea4bd672fb 222 Gene3D G3DSA:1.10.10.2800 4 110 2.8E-15 T 13-10-2018 trd_1238 9b3f7499c31dceabfe3f16ea4bd672fb 222 Hamap MF_01114 Regulatory protein RecX [recX]. 46 212 15.821 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 trd_1238 9b3f7499c31dceabfe3f16ea4bd672fb 222 Pfam PF02631 RecX family 88 207 2.7E-30 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 trd_0177 ffcc2a70d520289942973939c17b97ea 365 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 329 9.3E-101 T 13-10-2018 IPR017861 Kae1/TsaD family trd_0177 ffcc2a70d520289942973939c17b97ea 365 Gene3D G3DSA:3.30.420.40 135 316 4.9E-120 T 13-10-2018 trd_0177 ffcc2a70d520289942973939c17b97ea 365 Gene3D G3DSA:3.30.420.40 3 337 4.9E-120 T 13-10-2018 trd_0177 ffcc2a70d520289942973939c17b97ea 365 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 335 2.8E-121 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 trd_0177 ffcc2a70d520289942973939c17b97ea 365 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 354 62.574 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 trd_0177 ffcc2a70d520289942973939c17b97ea 365 Pfam PF00814 Glycoprotease family 24 329 2.5E-97 T 13-10-2018 IPR000905 Gcp-like domain trd_0177 ffcc2a70d520289942973939c17b97ea 365 SUPERFAMILY SSF53067 2 330 4.73E-43 T 13-10-2018 trd_0177 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 5.7E-44 T 13-10-2018 IPR017861 Kae1/TsaD family trd_0177 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 289 298 5.7E-44 T 13-10-2018 IPR017861 Kae1/TsaD family trd_0177 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 5.7E-44 T 13-10-2018 IPR017861 Kae1/TsaD family trd_0177 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 5.7E-44 T 13-10-2018 IPR017861 Kae1/TsaD family trd_0177 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 160 181 5.7E-44 T 13-10-2018 IPR017861 Kae1/TsaD family trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 SUPERFAMILY SSF51998 194 845 1.46E-132 T 13-10-2018 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 Pfam PF02867 Ribonucleotide reductase, barrel domain 737 841 5.7E-19 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 PRINTS PR01183 Ribonucleotide reductase large chain signature 272 291 8.0E-9 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 PRINTS PR01183 Ribonucleotide reductase large chain signature 472 494 8.0E-9 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 PRINTS PR01183 Ribonucleotide reductase large chain signature 399 410 8.0E-9 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 44 144 1.4E-39 T 13-10-2018 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 Pfam PF02867 Ribonucleotide reductase, barrel domain 195 682 3.1E-113 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 Gene3D G3DSA:3.20.70.20 48 699 1.3E-161 T 13-10-2018 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 Gene3D G3DSA:3.20.70.20 726 857 3.9E-34 T 13-10-2018 trd_1815 1feec2b0ea2a55d618017c7cebaafecf 1122 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 104 682 1.4E-149 T 13-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 Pfam PF01614 Bacterial transcriptional regulator 133 248 2.4E-23 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 Gene3D G3DSA:3.30.450.40 85 254 2.6E-33 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 Gene3D G3DSA:1.10.10.10 8 81 4.8E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 SUPERFAMILY SSF55781 90 250 3.58E-29 T 13-10-2018 trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 Pfam PF09339 IclR helix-turn-helix domain 14 62 9.8E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 SUPERFAMILY SSF46785 12 79 8.86E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0536 1b2e5e5a2c87b78bb2abe8c09129738d 270 SMART SM00346 10 99 0.0033 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_1549 ccf4086008c55a31f070f39e116a100a 668 SMART SM00490 457 543 3.3E-20 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1549 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 412 593 3.9E-52 T 13-10-2018 trd_1549 ccf4086008c55a31f070f39e116a100a 668 Pfam PF04851 Type III restriction enzyme, res subunit 11 137 5.3E-12 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 trd_1549 ccf4086008c55a31f070f39e116a100a 668 Pfam PF00271 Helicase conserved C-terminal domain 431 542 4.1E-17 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1549 ccf4086008c55a31f070f39e116a100a 668 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 661 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 trd_1549 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF52540 3 412 1.05E-136 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1549 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 1 241 6.7E-75 T 13-10-2018 trd_1549 ccf4086008c55a31f070f39e116a100a 668 Pfam PF12344 Ultra-violet resistance protein B 549 591 1.6E-22 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain trd_1549 ccf4086008c55a31f070f39e116a100a 668 Pfam PF02151 UvrB/uvrC motif 629 662 9.0E-10 T 13-10-2018 IPR001943 UVR domain GO:0005515 trd_1549 ccf4086008c55a31f070f39e116a100a 668 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 663 44.163 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 trd_1549 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF52540 35 575 1.22E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1549 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF46600 622 665 8.76E-13 T 13-10-2018 IPR036876 UVR domain superfamily trd_1549 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 274 411 7.8E-55 T 13-10-2018 trd_1549 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:4.10.860.10 614 666 3.5E-11 T 13-10-2018 trd_1549 ccf4086008c55a31f070f39e116a100a 668 SMART SM00487 8 423 1.9E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 216 333 1.4E-29 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Gene3D G3DSA:3.30.565.10 10 219 1.0E-62 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Gene3D G3DSA:3.30.1370.100 423 531 7.2E-40 T 13-10-2018 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 SMART SM00853 382 534 4.9E-26 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Gene3D G3DSA:3.30.230.10 225 333 2.5E-26 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 126 3.8E-9 T 13-10-2018 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 SUPERFAMILY SSF118116 377 574 1.09E-29 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily trd_A0448 21321ba841cd0cce26961d243590fb4d 576 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 10 314 1.8E-87 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 100 106 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 9 574 23.978 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Gene3D G3DSA:2.30.42.20 383 574 7.2E-40 T 13-10-2018 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 SUPERFAMILY SSF55874 9 220 3.8E-55 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0448 21321ba841cd0cce26961d243590fb4d 576 SMART SM01340 215 334 9.3E-41 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 Pfam PF08676 MutL C terminal dimerisation domain 380 534 1.9E-22 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 trd_A0448 21321ba841cd0cce26961d243590fb4d 576 SUPERFAMILY SSF54211 199 334 4.55E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1569 3557ffc1588722ee1e0daaf7af4dbaa7 343 Pfam PF02153 Prephenate dehydrogenase 27 274 9.1E-56 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 trd_1569 3557ffc1588722ee1e0daaf7af4dbaa7 343 SUPERFAMILY SSF48179 178 285 4.65E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_1569 3557ffc1588722ee1e0daaf7af4dbaa7 343 SUPERFAMILY SSF51735 3 173 2.31E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1569 3557ffc1588722ee1e0daaf7af4dbaa7 343 Gene3D G3DSA:1.10.3660.10 181 290 2.5E-32 T 13-10-2018 trd_1569 3557ffc1588722ee1e0daaf7af4dbaa7 343 Gene3D G3DSA:3.40.50.720 1 180 7.3E-52 T 13-10-2018 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 SUPERFAMILY SSF53474 3 368 2.05E-91 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 PIRSF PIRSF001112 1 371 1.4E-86 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 Pfam PF06441 Epoxide hydrolase N terminus 3 105 4.1E-26 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 PRINTS PR00412 Epoxide hydrolase signature 96 114 5.5E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 PRINTS PR00412 Epoxide hydrolase signature 175 188 5.5E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 PRINTS PR00412 Epoxide hydrolase signature 161 174 5.5E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 PRINTS PR00412 Epoxide hydrolase signature 343 365 5.5E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 PRINTS PR00412 Epoxide hydrolase signature 312 328 5.5E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0927 46163b68b30a1bd1fcca31b9b185390c 371 Gene3D G3DSA:3.40.50.1820 3 371 2.9E-123 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0815 a3b50eabc746f53e26ee784600b61956 373 Pfam PF01230 HIT domain 115 197 1.2E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_A0815 a3b50eabc746f53e26ee784600b61956 373 SUPERFAMILY SSF54197 72 223 3.74E-36 T 13-10-2018 IPR036265 HIT-like superfamily trd_A0815 a3b50eabc746f53e26ee784600b61956 373 Pfam PF00293 NUDIX domain 244 345 1.1E-10 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_A0815 a3b50eabc746f53e26ee784600b61956 373 Gene3D G3DSA:3.30.428.10 63 233 4.1E-46 T 13-10-2018 IPR036265 HIT-like superfamily trd_A0815 a3b50eabc746f53e26ee784600b61956 373 SUPERFAMILY SSF55811 242 363 3.93E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_A0815 a3b50eabc746f53e26ee784600b61956 373 ProSitePatterns PS00893 Nudix box signature. 272 293 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 trd_A0815 a3b50eabc746f53e26ee784600b61956 373 Gene3D G3DSA:3.90.79.10 241 364 1.8E-18 T 13-10-2018 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 Gene3D G3DSA:3.20.20.360 1 404 6.6E-204 T 13-10-2018 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 SUPERFAMILY SSF51645 4 521 4.45E-199 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 Gene3D G3DSA:1.20.1220.12 407 521 8.7E-42 T 13-10-2018 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 17 521 1.5E-244 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 PIRSF PIRSF001363 1 522 2.3E-253 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 Pfam PF01274 Malate synthase 5 521 5.9E-211 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 trd_0495 3236fe30c5d5c0622583187cbb99e3b4 522 ProSitePatterns PS00510 Malate synthase signature. 259 274 - T 13-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 trd_1257 839c3086bc3daf1a7d38a4619b639c67 371 Gene3D G3DSA:3.30.428.10 220 334 7.2E-6 T 13-10-2018 IPR036265 HIT-like superfamily trd_1257 839c3086bc3daf1a7d38a4619b639c67 371 Gene3D G3DSA:3.30.428.10 145 219 7.2E-6 T 13-10-2018 IPR036265 HIT-like superfamily trd_1257 839c3086bc3daf1a7d38a4619b639c67 371 SUPERFAMILY SSF54197 84 212 5.1E-7 T 13-10-2018 IPR036265 HIT-like superfamily trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 SUPERFAMILY SSF52540 1 375 1.08E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 ProSitePatterns PS00617 RecF protein signature 1. 128 148 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 Gene3D G3DSA:3.40.50.300 6 371 3.4E-87 T 13-10-2018 trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 376 4.1E-15 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 377 4.6E-82 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 Gene3D G3DSA:1.20.1050.90 131 335 3.4E-87 T 13-10-2018 trd_0713 f36d72b5e25d58d55654ef893a56f59b 396 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 396 80.28 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 SUPERFAMILY SSF47323 343 405 1.07E-5 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 Gene3D G3DSA:3.40.50.620 1 316 1.4E-125 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1909 f0f7167e38c85212aefedb9b3683d533 407 SUPERFAMILY SSF52374 10 319 1.23E-86 T 13-10-2018 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 201 219 3.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 232 253 3.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 32 43 3.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 68 77 3.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 9 407 29.309 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 10 402 3.4E-119 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 Gene3D G3DSA:1.20.120.640 321 407 1.4E-7 T 13-10-2018 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 Pfam PF09190 DALR domain 354 404 1.6E-5 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 trd_1909 f0f7167e38c85212aefedb9b3683d533 407 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 23 317 6.8E-110 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 trd_0764 22530ecbab1cad6e63b53f5a07cdec5a 282 Pfam PF01972 Serine dehydrogenase proteinase 4 276 1.2E-126 T 13-10-2018 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 trd_0764 22530ecbab1cad6e63b53f5a07cdec5a 282 SUPERFAMILY SSF52096 53 236 1.31E-27 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_0764 22530ecbab1cad6e63b53f5a07cdec5a 282 Gene3D G3DSA:3.90.226.10 54 262 1.8E-24 T 13-10-2018 trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 Pfam PF01022 Bacterial regulatory protein, arsR family 285 330 5.8E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 Gene3D G3DSA:1.10.10.10 274 370 8.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 312 327 9.1E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 327 342 9.1E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 280 295 9.1E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 SMART SM00418 278 356 5.4E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0328 6760e83acf28f3b4d8f26a470323f13c 397 SUPERFAMILY SSF46785 273 357 9.67E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1213 e765868350f0cc4aeb988fef76cae7a3 202 Pfam PF12804 MobA-like NTP transferase domain 6 166 2.9E-40 T 13-10-2018 IPR025877 MobA-like NTP transferase trd_1213 e765868350f0cc4aeb988fef76cae7a3 202 SUPERFAMILY SSF53448 3 188 5.2E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1213 e765868350f0cc4aeb988fef76cae7a3 202 Gene3D G3DSA:3.90.550.10 1 196 3.8E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0879 e455fa4a203fe2f139c837e5b8f80dba 538 Gene3D G3DSA:3.30.70.360 222 325 1.7E-6 T 13-10-2018 trd_0879 e455fa4a203fe2f139c837e5b8f80dba 538 SUPERFAMILY SSF53187 11 471 3.77E-33 T 13-10-2018 trd_0879 e455fa4a203fe2f139c837e5b8f80dba 538 Gene3D G3DSA:3.40.630.10 7 218 1.2E-33 T 13-10-2018 trd_0879 e455fa4a203fe2f139c837e5b8f80dba 538 SUPERFAMILY SSF55031 223 322 1.92E-6 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_A0778 905253c94961a9c35ae049db96d0c959 448 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.5E-49 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_A0778 905253c94961a9c35ae049db96d0c959 448 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 2.8E-195 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 trd_A0778 905253c94961a9c35ae049db96d0c959 448 Gene3D G3DSA:3.30.470.130 1 447 1.6E-197 T 13-10-2018 trd_A0778 905253c94961a9c35ae049db96d0c959 448 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_A0778 905253c94961a9c35ae049db96d0c959 448 SUPERFAMILY SSF52440 1 113 4.03E-51 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_A0778 905253c94961a9c35ae049db96d0c959 448 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_A0778 905253c94961a9c35ae049db96d0c959 448 SUPERFAMILY SSF51246 330 444 8.37E-40 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 trd_A0778 905253c94961a9c35ae049db96d0c959 448 Pfam PF02785 Biotin carboxylase C-terminal domain 335 442 6.0E-37 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_A0778 905253c94961a9c35ae049db96d0c959 448 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 321 1.3E-76 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_A0778 905253c94961a9c35ae049db96d0c959 448 SMART SM00878 335 441 2.4E-54 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_A0778 905253c94961a9c35ae049db96d0c959 448 SUPERFAMILY SSF56059 83 347 3.36E-73 T 13-10-2018 trd_1215 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 410 777 2.2E-141 T 13-10-2018 trd_1215 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.90.1170.50 74 173 1.0E-119 T 13-10-2018 trd_1215 2fd56ba022d6041aac990cff49594cda 809 SUPERFAMILY SSF56003 165 800 6.54E-208 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_1215 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 174 402 1.0E-119 T 13-10-2018 trd_1215 2fd56ba022d6041aac990cff49594cda 809 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 189 737 2.4E-177 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_1215 2fd56ba022d6041aac990cff49594cda 809 SUPERFAMILY SSF54665 38 195 5.5E-42 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_1215 2fd56ba022d6041aac990cff49594cda 809 SMART SM01008 59 173 1.8E-38 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1215 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 497 652 2.2E-141 T 13-10-2018 trd_1215 2fd56ba022d6041aac990cff49594cda 809 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 60 173 1.9E-23 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1215 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 59 325 1.0E-119 T 13-10-2018 trd_0554 aa78a423be6034b830559c54cac69be4 306 SUPERFAMILY SSF52540 4 225 2.3E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0554 aa78a423be6034b830559c54cac69be4 306 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 301 1.0E-106 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 trd_0554 aa78a423be6034b830559c54cac69be4 306 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0554 aa78a423be6034b830559c54cac69be4 306 Pfam PF13732 Domain of unknown function (DUF4162) 218 299 3.9E-7 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 trd_0554 aa78a423be6034b830559c54cac69be4 306 Pfam PF00005 ABC transporter 22 163 2.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0554 aa78a423be6034b830559c54cac69be4 306 Gene3D G3DSA:3.40.50.300 1 236 2.5E-69 T 13-10-2018 trd_0554 aa78a423be6034b830559c54cac69be4 306 SMART SM00382 29 220 8.4E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1063 c49735c176a82e240befb4198826a2fc 373 Pfam PF05343 M42 glutamyl aminopeptidase 56 352 1.5E-85 T 13-10-2018 IPR008007 Peptidase M42 trd_1063 c49735c176a82e240befb4198826a2fc 373 Gene3D G3DSA:3.40.630.10 19 352 5.0E-106 T 13-10-2018 trd_1063 c49735c176a82e240befb4198826a2fc 373 PIRSF PIRSF001123 12 369 1.9E-99 T 13-10-2018 IPR008007 Peptidase M42 trd_1063 c49735c176a82e240befb4198826a2fc 373 Gene3D G3DSA:2.40.30.40 80 168 5.0E-106 T 13-10-2018 IPR023367 Peptidase M42, domain 2 trd_1063 c49735c176a82e240befb4198826a2fc 373 SUPERFAMILY SSF101821 81 186 8.24E-23 T 13-10-2018 trd_1063 c49735c176a82e240befb4198826a2fc 373 SUPERFAMILY SSF53187 15 364 1.08E-59 T 13-10-2018 trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 Pfam PF00271 Helicase conserved C-terminal domain 692 796 1.7E-13 T 13-10-2018 IPR001650 Helicase, C-terminal trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 SMART SM00487 228 440 2.5E-8 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 Gene3D G3DSA:3.40.50.10810 230 443 3.6E-42 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 SUPERFAMILY SSF52540 251 802 1.4E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 Gene3D G3DSA:3.30.870.10 44 184 5.4E-6 T 13-10-2018 trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 SUPERFAMILY SSF56024 109 180 2.51E-5 T 13-10-2018 trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 Pfam PF00176 SNF2 family N-terminal domain 255 448 2.0E-11 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 SMART SM00490 703 796 3.3E-14 T 13-10-2018 IPR001650 Helicase, C-terminal trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 Gene3D G3DSA:3.40.50.300 627 828 4.8E-29 T 13-10-2018 trd_A0281 2b8ff319bb5725edb909975bdc581b28 900 Pfam PF13091 PLD-like domain 46 177 1.6E-10 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 trd_1141 9b4616c0fd985a010ae01093c6102069 942 ProSitePatterns PS00958 Transaldolase active site. 138 155 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 trd_1141 9b4616c0fd985a010ae01093c6102069 942 Gene3D G3DSA:3.40.50.10490 428 600 5.4E-45 T 13-10-2018 trd_1141 9b4616c0fd985a010ae01093c6102069 942 Gene3D G3DSA:3.20.20.70 3 375 3.0E-153 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1141 9b4616c0fd985a010ae01093c6102069 942 PRINTS PR00662 Glucose-6-phosphate isomerase signature 464 483 6.4E-6 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1141 9b4616c0fd985a010ae01093c6102069 942 PRINTS PR00662 Glucose-6-phosphate isomerase signature 575 593 6.4E-6 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1141 9b4616c0fd985a010ae01093c6102069 942 PRINTS PR00662 Glucose-6-phosphate isomerase signature 648 669 6.4E-6 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1141 9b4616c0fd985a010ae01093c6102069 942 Pfam PF00342 Phosphoglucose isomerase 439 671 3.3E-15 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1141 9b4616c0fd985a010ae01093c6102069 942 TIGRFAM TIGR00876 tal_mycobact: transaldolase 14 368 1.8E-103 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 trd_1141 9b4616c0fd985a010ae01093c6102069 942 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 16 369 1.4E-81 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 trd_1141 9b4616c0fd985a010ae01093c6102069 942 SUPERFAMILY SSF53697 394 778 2.05E-72 T 13-10-2018 trd_1141 9b4616c0fd985a010ae01093c6102069 942 ProSitePatterns PS01054 Transaldolase signature 1. 42 50 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 trd_1141 9b4616c0fd985a010ae01093c6102069 942 Gene3D G3DSA:3.40.50.10490 604 681 2.2E-5 T 13-10-2018 trd_1141 9b4616c0fd985a010ae01093c6102069 942 Hamap MF_00493 Transaldolase [tal]. 1 380 133.299 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 trd_1141 9b4616c0fd985a010ae01093c6102069 942 SUPERFAMILY SSF51569 2 373 5.86E-70 T 13-10-2018 trd_1164 08cf140510c5c1012a6c91d776c99908 327 Gene3D G3DSA:3.40.1010.20 19 300 4.4E-83 T 13-10-2018 trd_1164 08cf140510c5c1012a6c91d776c99908 327 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 15 307 30.972 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 trd_1164 08cf140510c5c1012a6c91d776c99908 327 Gene3D G3DSA:3.40.1010.20 110 220 4.4E-83 T 13-10-2018 trd_1164 08cf140510c5c1012a6c91d776c99908 327 Gene3D G3DSA:3.40.50.11270 26 109 4.4E-83 T 13-10-2018 trd_1164 08cf140510c5c1012a6c91d776c99908 327 Pfam PF02401 LytB protein 17 303 7.9E-78 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 trd_1164 08cf140510c5c1012a6c91d776c99908 327 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 16 303 1.3E-76 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 trd_1579 2000676c0d8c53dc1134561d960f60bc 335 Gene3D G3DSA:3.20.20.210 3 327 3.8E-62 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1579 2000676c0d8c53dc1134561d960f60bc 335 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 7 327 2.3E-32 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_1579 2000676c0d8c53dc1134561d960f60bc 335 SUPERFAMILY SSF51726 6 330 2.22E-44 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_A0852 6e493d403db092f17ff2290a0ab19c54 171 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 2 116 3.0E-7 T 13-10-2018 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 trd_A0852 6e493d403db092f17ff2290a0ab19c54 171 SUPERFAMILY SSF51283 2 169 8.64E-39 T 13-10-2018 IPR036157 dUTPase-like superfamily trd_A0852 6e493d403db092f17ff2290a0ab19c54 171 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 169 1.1E-40 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 trd_A0852 6e493d403db092f17ff2290a0ab19c54 171 Gene3D G3DSA:2.70.40.10 3 171 1.3E-45 T 13-10-2018 IPR036157 dUTPase-like superfamily trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 Pfam PF01436 NHL repeat 397 422 1.8E-4 T 13-10-2018 IPR001258 NHL repeat GO:0005515 trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 Pfam PF01436 NHL repeat 118 145 9.3E-5 T 13-10-2018 IPR001258 NHL repeat GO:0005515 trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 Gene3D G3DSA:3.40.30.10 1 103 2.4E-17 T 13-10-2018 trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 SUPERFAMILY SSF101898 111 428 1.31E-29 T 13-10-2018 trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 Gene3D G3DSA:2.120.10.30 108 203 3.4E-16 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 SUPERFAMILY SSF52833 2 90 3.95E-14 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 Gene3D G3DSA:2.120.10.30 370 437 4.6E-11 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_1418 e4948e47bd618428c76ad2a34115bc0b 443 Gene3D G3DSA:2.120.10.30 237 369 1.8E-20 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_1810 01b45d501d63a24440529e61c891a2ed 353 SUPERFAMILY SSF89733 3 350 8.11E-112 T 13-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 trd_1810 01b45d501d63a24440529e61c891a2ed 353 Gene3D G3DSA:3.30.1370.60 69 323 9.8E-127 T 13-10-2018 trd_1810 01b45d501d63a24440529e61c891a2ed 353 Pfam PF02615 Malate/L-lactate dehydrogenase 6 340 1.9E-121 T 13-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 trd_1810 01b45d501d63a24440529e61c891a2ed 353 Gene3D G3DSA:1.10.1530.10 11 344 9.8E-127 T 13-10-2018 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 SUPERFAMILY SSF46785 5 64 1.78E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 Pfam PF01037 Lrp/AsnC ligand binding domain 71 138 2.5E-15 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 SMART SM00344 5 110 2.0E-36 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 SUPERFAMILY SSF54909 64 143 7.11E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 Pfam PF13404 AsnC-type helix-turn-helix domain 5 45 5.2E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 Gene3D G3DSA:3.30.70.920 56 146 9.0E-21 T 13-10-2018 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 2.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 2.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 2.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 trd_A0750 09ef1b090527cc5c2e5433ae6a655d80 194 Gene3D G3DSA:1.10.10.10 5 52 1.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 Gene3D G3DSA:3.30.930.10 20 357 5.5E-116 T 13-10-2018 trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 33 100 2.7E-21 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 51 354 1.9E-93 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 SUPERFAMILY SSF46589 28 112 3.77E-18 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 SUPERFAMILY SSF55681 105 355 3.82E-78 T 13-10-2018 trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 21 354 45.151 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 trd_0641 4f73b199a61f8ecda1e45f667f0c3b83 359 Pfam PF01409 tRNA synthetases class II core domain (F) 105 354 2.3E-99 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 Gene3D G3DSA:3.40.50.1220 197 321 3.3E-51 T 13-10-2018 trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 SUPERFAMILY SSF52467 199 319 6.29E-44 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 Gene3D G3DSA:3.40.50.620 2 196 5.9E-41 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 SUPERFAMILY SSF52402 5 189 2.3E-35 T 13-10-2018 trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 SMART SM00893 5 188 3.9E-21 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 199 282 4.5E-33 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 Pfam PF01012 Electron transfer flavoprotein domain 7 178 1.9E-31 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0148 3faed46459e402d5ba7acbbf71c2de74 321 PIRSF PIRSF000089 1 321 7.0E-89 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 trd_1223 a74456ee2059d54299836df6cf94202d 148 SUPERFAMILY SSF82093 44 143 3.66E-24 T 13-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 trd_1223 a74456ee2059d54299836df6cf94202d 148 Pfam PF03100 CcmE 19 141 1.3E-30 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 trd_1223 a74456ee2059d54299836df6cf94202d 148 Gene3D G3DSA:2.40.50.140 42 147 1.0E-25 T 13-10-2018 trd_0982 ceb970eb832a6c47fafbd7e5a02241c3 104 SUPERFAMILY SSF54189 7 102 7.19E-32 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0982 ceb970eb832a6c47fafbd7e5a02241c3 104 Pfam PF00276 Ribosomal protein L23 9 99 2.0E-35 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 trd_0982 ceb970eb832a6c47fafbd7e5a02241c3 104 ProSitePatterns PS00050 Ribosomal protein L23 signature. 86 101 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0982 ceb970eb832a6c47fafbd7e5a02241c3 104 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 103 23.5 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 trd_0982 ceb970eb832a6c47fafbd7e5a02241c3 104 Gene3D G3DSA:3.30.70.330 7 103 1.6E-34 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily trd_1709 3547ad3a33f592a33746c8be175a4163 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 166 6.7E-49 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1709 3547ad3a33f592a33746c8be175a4163 408 SUPERFAMILY SSF63867 327 399 7.06E-15 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1709 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:2.40.340.10 326 394 3.9E-134 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1709 3547ad3a33f592a33746c8be175a4163 408 Pfam PF03454 MoeA C-terminal region (domain IV) 330 398 8.9E-13 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1709 3547ad3a33f592a33746c8be175a4163 408 Pfam PF00994 Probable molybdopterin binding domain 180 315 1.0E-27 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1709 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:2.170.190.11 50 140 3.9E-134 T 13-10-2018 trd_1709 3547ad3a33f592a33746c8be175a4163 408 SMART SM00852 179 316 9.0E-41 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1709 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:3.90.105.10 26 173 3.9E-134 T 13-10-2018 trd_1709 3547ad3a33f592a33746c8be175a4163 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 176 310 1.3E-34 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1709 3547ad3a33f592a33746c8be175a4163 408 SUPERFAMILY SSF53218 176 321 6.81E-44 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_1709 3547ad3a33f592a33746c8be175a4163 408 SUPERFAMILY SSF63882 5 175 9.55E-58 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1709 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:3.40.980.10 174 325 3.9E-134 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 Gene3D G3DSA:1.20.120.530 88 226 2.1E-34 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 SUPERFAMILY SSF48008 90 225 1.23E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 Gene3D G3DSA:1.10.10.10 19 85 6.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 SUPERFAMILY SSF46785 21 110 3.2E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 3.3E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 SMART SM00895 94 217 1.9E-29 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 SMART SM00345 26 84 1.7E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0077 15b28696e16d0e4153d42575ef37fc99 237 Pfam PF07729 FCD domain 94 216 2.6E-31 T 13-10-2018 IPR011711 GntR, C-terminal trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SMART SM00851 955 1043 2.3E-22 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02142 MGS-like domain 957 1043 1.3E-17 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF52440 7 127 4.46E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SMART SM01209 678 843 0.0048 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF48108 394 546 1.83E-47 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF52440 550 673 1.44E-38 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.30.470.20 664 935 7.6E-104 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF56059 672 933 2.65E-94 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1064 12.69 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 836 843 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF52335 943 1060 4.45E-28 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.30.470.20 120 401 6.3E-123 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 6.8E-76 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 672 872 7.9E-34 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.40.50.1380 937 1071 2.6E-31 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:1.10.1030.10 402 546 1.7E-45 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.40.50.20 1 116 1.1E-45 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.40.50.20 547 661 2.9E-39 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 7 1055 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF56059 128 399 5.13E-107 T 13-10-2018 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 4.3E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 SMART SM01096 420 540 8.2E-65 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 2.8E-40 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1070 13.297 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0212 48932cc12bc336d96802f9e9c7c7535d 1078 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 708 722 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_1401 48c46f343095017f0b548503460d464c 238 SMART SM00382 26 233 7.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1401 48c46f343095017f0b548503460d464c 238 Pfam PF00005 ABC transporter 17 162 3.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1401 48c46f343095017f0b548503460d464c 238 Gene3D G3DSA:3.40.50.300 1 235 3.4E-59 T 13-10-2018 trd_1401 48c46f343095017f0b548503460d464c 238 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1401 48c46f343095017f0b548503460d464c 238 SUPERFAMILY SSF52540 2 232 4.4E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0438 559448683b7572853b9706c9370035b4 174 Pfam PF07452 CHRD domain 37 122 4.9E-5 T 13-10-2018 IPR010895 CHRD trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 284 398 4.1E-38 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 SUPERFAMILY SSF53901 33 281 1.18E-73 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 33 276 7.2E-55 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 SMART SM00825 Beta-ketoacyl synthase 35 443 3.7E-18 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 184 200 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 Gene3D G3DSA:3.40.47.10 21 284 4.1E-89 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 PIRSF PIRSF000447 31 443 9.3E-161 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 33 438 7.4E-165 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 Gene3D G3DSA:3.40.47.10 286 430 4.7E-53 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0527 ae5f76f9a8c4fbd81e750af148996433 458 SUPERFAMILY SSF53901 244 441 2.88E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_1180 b70a249ec5ee7421eb1275e0cc0fc946 229 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 23 71 3.1E-11 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 trd_1180 b70a249ec5ee7421eb1275e0cc0fc946 229 Pfam PF12728 Helix-turn-helix domain 23 72 1.9E-13 T 13-10-2018 trd_1180 b70a249ec5ee7421eb1275e0cc0fc946 229 Gene3D G3DSA:1.10.1660.10 15 86 4.3E-13 T 13-10-2018 trd_1180 b70a249ec5ee7421eb1275e0cc0fc946 229 SUPERFAMILY SSF46955 23 73 9.61E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_A0682 709e7b5d6ba213accf6deee03bff8156 412 Gene3D G3DSA:3.30.9.10 133 352 5.3E-91 T 13-10-2018 trd_A0682 709e7b5d6ba213accf6deee03bff8156 412 Gene3D G3DSA:3.50.50.60 47 393 5.3E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0682 709e7b5d6ba213accf6deee03bff8156 412 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 47 397 2.2E-81 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 trd_A0682 709e7b5d6ba213accf6deee03bff8156 412 SUPERFAMILY SSF54373 268 351 1.31E-14 T 13-10-2018 trd_A0682 709e7b5d6ba213accf6deee03bff8156 412 Pfam PF01266 FAD dependent oxidoreductase 47 392 3.2E-58 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_A0682 709e7b5d6ba213accf6deee03bff8156 412 SUPERFAMILY SSF51905 46 410 1.99E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1437 6250f98597980f4028e0b7ba23a0f9fa 275 Pfam PF13614 AAA domain 3 177 3.1E-56 T 13-10-2018 IPR025669 AAA domain trd_1437 6250f98597980f4028e0b7ba23a0f9fa 275 Gene3D G3DSA:3.40.50.300 1 255 8.1E-80 T 13-10-2018 trd_1437 6250f98597980f4028e0b7ba23a0f9fa 275 SUPERFAMILY SSF52540 3 254 1.01E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0351 3cb17201d8fc623ef1220154dc024141 302 Pfam PF00781 Diacylglycerol kinase catalytic domain 7 113 2.4E-18 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 trd_0351 3cb17201d8fc623ef1220154dc024141 302 Gene3D G3DSA:2.60.200.40 126 287 2.8E-26 T 13-10-2018 trd_0351 3cb17201d8fc623ef1220154dc024141 302 Gene3D G3DSA:3.40.50.10330 2 125 2.8E-23 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 trd_0351 3cb17201d8fc623ef1220154dc024141 302 SUPERFAMILY SSF111331 4 294 2.18E-55 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily trd_A0394 14920427a08f7cb65352617eba10fbf7 576 SUPERFAMILY SSF81442 21 532 3.53E-65 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 Gene3D G3DSA:1.20.210.10 7 568 9.4E-96 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 PRINTS PR01165 Cytochrome c oxidase subunit I signature 349 367 5.0E-12 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 PRINTS PR01165 Cytochrome c oxidase subunit I signature 180 199 5.0E-12 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 PRINTS PR01165 Cytochrome c oxidase subunit I signature 152 170 5.0E-12 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 PRINTS PR01165 Cytochrome c oxidase subunit I signature 60 83 5.0E-12 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 PRINTS PR01165 Cytochrome c oxidase subunit I signature 428 449 5.0E-12 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 PRINTS PR01165 Cytochrome c oxidase subunit I signature 377 396 5.0E-12 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0394 14920427a08f7cb65352617eba10fbf7 576 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 24 484 8.0E-57 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 SMART SM00642 162 526 1.1E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 542 640 3.0E-26 T 13-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Gene3D G3DSA:2.60.40.1180 537 643 4.1E-41 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Pfam PF00128 Alpha amylase, catalytic domain 191 261 9.2E-10 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 20 638 3.1E-278 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Gene3D G3DSA:3.20.20.80 136 536 7.1E-166 T 13-10-2018 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Gene3D G3DSA:2.60.40.10 10 133 5.9E-45 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 12 641 44.768 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 SUPERFAMILY SSF81296 26 135 2.57E-24 T 13-10-2018 IPR014756 Immunoglobulin E-set trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 SUPERFAMILY SSF51011 537 640 1.73E-38 T 13-10-2018 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 PIRSF PIRSF000463 6 646 2.4E-281 T 13-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 35 119 5.1E-21 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 trd_1933 cdf3e432f7bfed85c5dc1163146ec034 647 SUPERFAMILY SSF51445 83 530 1.01E-113 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_A0397 adee322385f963c6745de345adb1614f 289 Gene3D G3DSA:3.20.20.140 4 273 2.7E-61 T 13-10-2018 trd_A0397 adee322385f963c6745de345adb1614f 289 SUPERFAMILY SSF89550 5 284 5.62E-34 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_A0397 adee322385f963c6745de345adb1614f 289 Pfam PF02811 PHP domain 5 106 5.6E-7 T 13-10-2018 IPR004013 PHP domain GO:0003824 trd_A0397 adee322385f963c6745de345adb1614f 289 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 5 263 9.2E-37 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 trd_0023 e267b12270fea59f2b25fd3726de6889 356 Gene3D G3DSA:3.90.650.10 156 341 1.9E-40 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0023 e267b12270fea59f2b25fd3726de6889 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 52 145 2.6E-8 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_0023 e267b12270fea59f2b25fd3726de6889 356 PIRSF PIRSF005644 5 345 1.3E-84 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE trd_0023 e267b12270fea59f2b25fd3726de6889 356 SUPERFAMILY SSF56042 156 341 2.54E-32 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0023 e267b12270fea59f2b25fd3726de6889 356 Gene3D G3DSA:3.30.1330.10 7 155 1.6E-16 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0023 e267b12270fea59f2b25fd3726de6889 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 162 320 1.2E-21 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_0023 e267b12270fea59f2b25fd3726de6889 356 SUPERFAMILY SSF55326 29 144 9.42E-18 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_A0470 0fc323e48206af1d608c06a868b30e1f 453 SUPERFAMILY SSF53850 37 391 4.92E-61 T 13-10-2018 trd_A0470 0fc323e48206af1d608c06a868b30e1f 453 Pfam PF13416 Bacterial extracellular solute-binding protein 84 384 5.3E-32 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_A0470 0fc323e48206af1d608c06a868b30e1f 453 Gene3D G3DSA:3.40.190.10 66 410 3.2E-142 T 13-10-2018 trd_A0470 0fc323e48206af1d608c06a868b30e1f 453 Gene3D G3DSA:3.40.190.10 184 433 3.2E-142 T 13-10-2018 trd_1624 79dd37736779eee419f9bdd385573343 101 SUPERFAMILY SSF57829 34 88 5.55E-19 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 trd_1624 79dd37736779eee419f9bdd385573343 101 Pfam PF01783 Ribosomal L32p protein family 35 89 1.8E-18 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1624 79dd37736779eee419f9bdd385573343 101 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 35 88 1.5E-17 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1624 79dd37736779eee419f9bdd385573343 101 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 33 88 15.199 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0489 6779bac12083ee96cee9b9768655696b 246 Gene3D G3DSA:3.40.50.10320 1 230 1.2E-73 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0489 6779bac12083ee96cee9b9768655696b 246 SUPERFAMILY SSF102588 9 222 9.68E-54 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0489 6779bac12083ee96cee9b9768655696b 246 Pfam PF02585 GlcNAc-PI de-N-acetylase 12 143 4.1E-33 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 40 57 9.0E-42 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 95 115 9.0E-42 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 116 136 9.0E-42 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 57 77 9.0E-42 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 199 223 9.0E-42 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 151 177 9.0E-42 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 40 222 1.2E-57 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1217 6a077b016f882fdbdfe483a1a3eb8de5 239 Pfam PF01578 Cytochrome C assembly protein 17 179 1.4E-34 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 trd_0442 11f5de7ade1b152013265a3a47f5a2cc 118 SUPERFAMILY SSF46955 8 112 1.65E-18 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_0442 11f5de7ade1b152013265a3a47f5a2cc 118 Gene3D G3DSA:1.10.1660.10 1 79 3.1E-22 T 13-10-2018 trd_0442 11f5de7ade1b152013265a3a47f5a2cc 118 SMART SM00422 8 77 1.8E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_0442 11f5de7ade1b152013265a3a47f5a2cc 118 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_0442 11f5de7ade1b152013265a3a47f5a2cc 118 Pfam PF13411 MerR HTH family regulatory protein 8 74 3.2E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_0944 64cdfe4ac8d8283c53641940b15249be 418 Gene3D G3DSA:3.40.50.2000 194 392 4.8E-125 T 13-10-2018 trd_0944 64cdfe4ac8d8283c53641940b15249be 418 Gene3D G3DSA:3.40.50.2000 9 393 4.8E-125 T 13-10-2018 trd_0944 64cdfe4ac8d8283c53641940b15249be 418 Pfam PF00534 Glycosyl transferases group 1 222 385 2.7E-24 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0944 64cdfe4ac8d8283c53641940b15249be 418 SUPERFAMILY SSF53756 34 407 3.1E-46 T 13-10-2018 trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 SMART SM00271 4 61 7.1E-33 T 13-10-2018 IPR001623 DnaJ domain trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 SUPERFAMILY SSF46565 1 94 7.85E-34 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 Gene3D G3DSA:1.10.287.110 2 131 2.5E-35 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 7 25 1.5E-26 T 13-10-2018 IPR001623 DnaJ domain trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 61 80 1.5E-26 T 13-10-2018 IPR001623 DnaJ domain trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 41 61 1.5E-26 T 13-10-2018 IPR001623 DnaJ domain trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 25 40 1.5E-26 T 13-10-2018 IPR001623 DnaJ domain trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 SUPERFAMILY SSF49493 243 328 1.83E-24 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 Gene3D G3DSA:2.60.260.20 238 341 4.5E-31 T 13-10-2018 trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 Gene3D G3DSA:2.60.260.20 138 237 7.7E-24 T 13-10-2018 trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 340 29.889 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 Pfam PF00226 DnaJ domain 5 66 1.8E-27 T 13-10-2018 IPR001623 DnaJ domain trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 SUPERFAMILY SSF49493 141 239 5.36E-19 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 13-10-2018 IPR018253 DnaJ domain, conserved site trd_0663 27aaa742a8d8cd7bbd26f9aae84aec84 341 Pfam PF01556 DnaJ C terminal domain 144 317 1.1E-42 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal trd_0233 16904dfe9fa4055deda7d4ba5070b0ed 295 Pfam PF00583 Acetyltransferase (GNAT) family 169 262 4.9E-15 T 13-10-2018 IPR000182 GNAT domain trd_0233 16904dfe9fa4055deda7d4ba5070b0ed 295 Pfam PF08445 FR47-like protein 75 119 5.1E-5 T 13-10-2018 IPR013653 FR47-like GO:0016747 trd_0233 16904dfe9fa4055deda7d4ba5070b0ed 295 Gene3D G3DSA:3.40.630.30 7 279 1.6E-27 T 13-10-2018 trd_0233 16904dfe9fa4055deda7d4ba5070b0ed 295 SUPERFAMILY SSF55729 83 270 3.55E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_0953 61cc18e258186cda4e0496ac6c07358f 143 Gene3D G3DSA:3.30.230.10 14 143 2.1E-50 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_0953 61cc18e258186cda4e0496ac6c07358f 143 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 13 143 33.694 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid trd_0953 61cc18e258186cda4e0496ac6c07358f 143 SUPERFAMILY SSF54211 16 143 5.69E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0953 61cc18e258186cda4e0496ac6c07358f 143 Pfam PF00380 Ribosomal protein S9/S16 22 143 1.6E-45 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 trd_0953 61cc18e258186cda4e0496ac6c07358f 143 ProSitePatterns PS00360 Ribosomal protein S9 signature. 82 100 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 trd_0232 3e76ca0ea9c1342c61830a74442cad4e 573 PIRSF PIRSF002741 50 570 9.2E-77 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_0232 3e76ca0ea9c1342c61830a74442cad4e 573 Gene3D G3DSA:3.90.76.10 112 239 1.7E-107 T 13-10-2018 trd_0232 3e76ca0ea9c1342c61830a74442cad4e 573 SUPERFAMILY SSF53850 78 567 1.81E-104 T 13-10-2018 trd_0232 3e76ca0ea9c1342c61830a74442cad4e 573 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 123 486 6.3E-64 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_0232 3e76ca0ea9c1342c61830a74442cad4e 573 Gene3D G3DSA:3.10.105.10 338 539 1.7E-107 T 13-10-2018 trd_0232 3e76ca0ea9c1342c61830a74442cad4e 573 Gene3D G3DSA:3.40.190.10 87 550 1.7E-107 T 13-10-2018 trd_A0613 b40759cff3682a3e91254ce25c2324dd 367 SUPERFAMILY SSF144052 1 365 6.15E-107 T 13-10-2018 trd_A0613 b40759cff3682a3e91254ce25c2324dd 367 Gene3D G3DSA:3.40.1830.10 2 162 3.6E-19 T 13-10-2018 IPR035097 Peptidase M29, N-terminal trd_A0613 b40759cff3682a3e91254ce25c2324dd 367 Pfam PF02073 Thermophilic metalloprotease (M29) 3 348 1.3E-98 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 Pfam PF04055 Radical SAM superfamily 19 173 3.9E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 Pfam PF13186 Iron-sulfur cluster-binding domain 241 302 2.1E-10 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 SUPERFAMILY SSF102114 13 312 1.28E-64 T 13-10-2018 trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 Gene3D G3DSA:3.20.20.70 14 298 7.6E-56 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 Pfam PF13353 4Fe-4S single cluster domain 21 115 9.9E-8 T 13-10-2018 trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 TIGRFAM TIGR03962 mycofact_rSAM: mycofactocin radical SAM maturase 4 337 4.8E-197 T 13-10-2018 IPR023913 Mycofactocin, radical SAM peptide maturase trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 PIRSF PIRSF037420 6 341 7.4E-67 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 SMART SM00729 14 212 0.009 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_A0840 2632aa2c1920c086cb9909b8f6f86d8e 365 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 241 330 5.5E-15 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain trd_1049 086bc421e4a0b9310952c085a67ddb7c 624 Pfam PF02574 Homocysteine S-methyltransferase 14 291 7.5E-63 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 trd_1049 086bc421e4a0b9310952c085a67ddb7c 624 SUPERFAMILY SSF51730 330 615 5.89E-72 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like trd_1049 086bc421e4a0b9310952c085a67ddb7c 624 Gene3D G3DSA:3.20.20.220 325 617 2.9E-62 T 13-10-2018 trd_1049 086bc421e4a0b9310952c085a67ddb7c 624 Gene3D G3DSA:3.20.20.330 2 302 1.1E-99 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 trd_1049 086bc421e4a0b9310952c085a67ddb7c 624 Pfam PF02219 Methylenetetrahydrofolate reductase 331 599 3.8E-38 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 trd_1049 086bc421e4a0b9310952c085a67ddb7c 624 SUPERFAMILY SSF82282 1 375 1.31E-111 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 trd_0748 4c24792f1839799245578c965acfa75d 236 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 226 44.562 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0748 4c24792f1839799245578c965acfa75d 236 Gene3D G3DSA:3.40.50.880 1 227 2.7E-71 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0748 4c24792f1839799245578c965acfa75d 236 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 210 1.4E-46 T 13-10-2018 trd_0748 4c24792f1839799245578c965acfa75d 236 SUPERFAMILY SSF52317 1 225 2.36E-77 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0748 4c24792f1839799245578c965acfa75d 236 SMART SM01211 1 227 1.5E-127 T 13-10-2018 trd_0748 4c24792f1839799245578c965acfa75d 236 PIRSF PIRSF001586 1 230 1.2E-84 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0748 4c24792f1839799245578c965acfa75d 236 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 226 1.3E-95 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_1822 cbb0a674898b6e6f1d9fff767e8ea38a 702 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 199 335 6.6E-15 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1822 cbb0a674898b6e6f1d9fff767e8ea38a 702 SMART SM00701 170 317 2.8E-27 T 13-10-2018 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1822 cbb0a674898b6e6f1d9fff767e8ea38a 702 SUPERFAMILY SSF55846 172 347 6.54E-43 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1822 cbb0a674898b6e6f1d9fff767e8ea38a 702 Gene3D G3DSA:3.40.80.10 169 350 3.4E-54 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1822 cbb0a674898b6e6f1d9fff767e8ea38a 702 SMART SM00644 189 335 0.002 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_A0023 4246bb70e9cfb80ff66ad70fcdfe5121 445 Gene3D G3DSA:3.40.50.2300 74 358 3.3E-51 T 13-10-2018 trd_A0023 4246bb70e9cfb80ff66ad70fcdfe5121 445 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 72 327 2.3E-18 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 trd_A0023 4246bb70e9cfb80ff66ad70fcdfe5121 445 Gene3D G3DSA:3.40.50.2300 175 394 3.3E-51 T 13-10-2018 trd_0167 5fa6894756865f95fd197bb08d81042e 164 SUPERFAMILY SSF55729 23 153 1.11E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_0167 5fa6894756865f95fd197bb08d81042e 164 Gene3D G3DSA:3.40.630.30 14 156 6.5E-36 T 13-10-2018 trd_0167 5fa6894756865f95fd197bb08d81042e 164 Pfam PF13673 Acetyltransferase (GNAT) domain 29 155 6.0E-23 T 13-10-2018 IPR000182 GNAT domain trd_A0262 a167c732ba59d36308877990bf41f87a 461 SUPERFAMILY SSF56322 44 458 2.62E-98 T 13-10-2018 IPR005801 ADC synthase GO:0009058 trd_A0262 a167c732ba59d36308877990bf41f87a 461 PRINTS PR00095 Anthranilate synthase component I signature 392 406 4.3E-6 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_A0262 a167c732ba59d36308877990bf41f87a 461 PRINTS PR00095 Anthranilate synthase component I signature 407 421 4.3E-6 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_A0262 a167c732ba59d36308877990bf41f87a 461 PRINTS PR00095 Anthranilate synthase component I signature 300 313 4.3E-6 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_A0262 a167c732ba59d36308877990bf41f87a 461 PRINTS PR00095 Anthranilate synthase component I signature 314 327 4.3E-6 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_A0262 a167c732ba59d36308877990bf41f87a 461 Gene3D G3DSA:3.60.120.10 23 460 3.5E-106 T 13-10-2018 IPR005801 ADC synthase GO:0009058 trd_A0262 a167c732ba59d36308877990bf41f87a 461 Pfam PF00425 chorismate binding enzyme 198 450 3.1E-78 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal trd_A0262 a167c732ba59d36308877990bf41f87a 461 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 114 458 1.8E-102 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 trd_1261 502e442193a066fa686408ee03513c74 273 Gene3D G3DSA:3.90.226.10 1 270 1.9E-93 T 13-10-2018 trd_1261 502e442193a066fa686408ee03513c74 273 SUPERFAMILY SSF52096 3 266 1.71E-78 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_1261 502e442193a066fa686408ee03513c74 273 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 268 36.775 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 118 131 8.3E-40 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 102 115 8.3E-40 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 83 99 8.3E-40 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 146 155 8.3E-40 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 62 80 8.3E-40 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 37 48 8.3E-40 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 3 268 4.6E-100 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1261 502e442193a066fa686408ee03513c74 273 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 2 97 5.4E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_A0792 3726d0bc7085dbdc0df9b9221cdda7e1 468 SUPERFAMILY SSF103025 37 332 3.92E-46 T 13-10-2018 trd_A0792 3726d0bc7085dbdc0df9b9221cdda7e1 468 PIRSF PIRSF006487 34 363 1.7E-23 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_A0792 3726d0bc7085dbdc0df9b9221cdda7e1 468 PIRSF PIRSF006487 371 451 0.82 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_A0792 3726d0bc7085dbdc0df9b9221cdda7e1 468 Pfam PF01571 Aminomethyltransferase folate-binding domain 37 250 3.2E-40 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain trd_A0792 3726d0bc7085dbdc0df9b9221cdda7e1 468 SUPERFAMILY SSF101790 372 426 1.01E-5 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal trd_A0792 3726d0bc7085dbdc0df9b9221cdda7e1 468 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 318 449 5.1E-9 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 Pfam PF01084 Ribosomal protein S18 50 100 1.8E-24 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 53 105 4.0E-15 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 TIGRFAM TIGR00165 S18: ribosomal protein bS18 37 103 6.6E-33 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 SUPERFAMILY SSF46911 33 104 5.49E-28 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 34 105 21.026 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 ProSitePatterns PS00057 Ribosomal protein S18 signature. 53 76 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 Gene3D G3DSA:4.10.640.10 23 106 3.2E-29 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.4E-17 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 78 92 9.4E-17 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 92 102 9.4E-17 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1247 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 70 77 9.4E-17 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:3.90.170.10 267 427 1.5E-70 T 13-10-2018 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 SUPERFAMILY SSF52540 1 425 9.14E-158 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 181.26 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 SMART SM00788 3 424 9.4E-247 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 423 2.0E-155 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:1.10.300.10 106 207 6.7E-90 T 13-10-2018 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:3.40.440.10 5 259 6.7E-90 T 13-10-2018 trd_0662 384e9c36bc496bc9cc0a0230e65fa95e 431 Pfam PF00709 Adenylosuccinate synthetase 4 422 1.7E-166 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 Gene3D G3DSA:3.40.50.460 135 382 1.2E-104 T 13-10-2018 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 4.7E-13 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 171 187 4.7E-13 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 34 47 4.7E-13 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 130 147 4.7E-13 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 97 113 4.7E-13 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 Gene3D G3DSA:3.40.50.450 6 384 1.2E-104 T 13-10-2018 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 PIRSF PIRSF036483 3 394 3.1E-93 T 13-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 394 37.193 T 13-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 Pfam PF00365 Phosphofructokinase 7 320 8.7E-43 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1096 201c7eb828ea88da4e8daae3b5baeb4e 396 SUPERFAMILY SSF53784 6 387 1.96E-74 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1526 e78784c830224345c375ac14c2a938a5 220 Pfam PF08279 HTH domain 14 60 2.8E-7 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 trd_1526 e78784c830224345c375ac14c2a938a5 220 Gene3D G3DSA:1.10.10.10 10 93 5.5E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1526 e78784c830224345c375ac14c2a938a5 220 SUPERFAMILY SSF46785 13 194 1.23E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF55666 146 237 4.35E-26 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 PIRSF PIRSF005499 4 734 2.7E-297 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:3.30.230.70 234 561 1.1E-121 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SMART SM00316 632 702 2.4E-23 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 703 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:3.30.1370.10 562 629 2.7E-19 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF55666 460 561 2.8E-29 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF00575 S1 RNA binding domain 631 702 5.5E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:2.40.50.140 631 705 6.6E-24 T 13-10-2018 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 705 30.525 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF50249 632 713 1.72E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SMART SM00322 564 629 3.0E-13 T 13-10-2018 IPR004087 K Homology domain GO:0003676 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF54211 5 145 1.37E-51 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF54211 303 499 6.07E-52 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF54791 567 652 1.26E-20 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF46915 240 330 2.3E-14 T 13-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF00013 KH domain 568 625 7.7E-12 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:3.30.230.70 4 230 7.7E-85 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF03725 3' exoribonuclease family, domain 2 148 207 2.7E-11 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF03725 3' exoribonuclease family, domain 2 470 540 1.6E-7 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF01138 3' exoribonuclease family, domain 1 15 145 3.3E-22 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF01138 3' exoribonuclease family, domain 1 333 466 5.9E-24 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0623 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 330 1.8E-11 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 trd_1159 c5b60de90d24a5207914b0ad613b37d9 312 Pfam PF00494 Squalene/phytoene synthase 23 274 2.0E-64 T 13-10-2018 trd_1159 c5b60de90d24a5207914b0ad613b37d9 312 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 135 150 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 trd_1159 c5b60de90d24a5207914b0ad613b37d9 312 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 165 190 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 trd_1159 c5b60de90d24a5207914b0ad613b37d9 312 SUPERFAMILY SSF48576 19 297 8.15E-75 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily trd_1159 c5b60de90d24a5207914b0ad613b37d9 312 Gene3D G3DSA:1.10.600.10 14 296 7.4E-76 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 SUPERFAMILY SSF143800 1 65 1.33E-23 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 27.164 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 Gene3D G3DSA:2.30.170.50 1 69 2.9E-27 T 13-10-2018 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 Pfam PF01197 Ribosomal protein L31 1 64 2.2E-28 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.3E-16 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.3E-16 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.3E-16 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1424 d6e7d97a3d0079d2f62f81df936b4a9c 106 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 2.4E-27 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_A0642 6727980e52be072a6371aeeca8639464 423 Pfam PF00460 Flagella basal body rod protein 8 35 6.5E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 trd_A0642 6727980e52be072a6371aeeca8639464 423 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 404 6.0E-89 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G trd_A0642 6727980e52be072a6371aeeca8639464 423 SUPERFAMILY SSF117143 92 383 2.48E-68 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like trd_A0642 6727980e52be072a6371aeeca8639464 423 Pfam PF07559 Flagellar basal body protein FlaE 186 299 8.2E-14 T 13-10-2018 IPR011491 Flagellar hook protein FlgE trd_A0642 6727980e52be072a6371aeeca8639464 423 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 344 421 5.3E-24 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain trd_A0642 6727980e52be072a6371aeeca8639464 423 Gene3D G3DSA:2.60.98.20 165 303 3.7E-11 T 13-10-2018 IPR037058 Flagellar hook protein FlgE superfamily trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 Pfam PF13662 Toprim domain 84 172 2.9E-25 T 13-10-2018 IPR006171 TOPRIM domain trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 TIGRFAM TIGR00615 recR: recombination protein RecR 8 199 1.1E-80 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 Gene3D G3DSA:3.30.60.80 57 79 1.2E-5 T 13-10-2018 trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 Gene3D G3DSA:3.40.1360.10 80 201 2.0E-47 T 13-10-2018 trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 SMART SM00493 83 168 3.9E-14 T 13-10-2018 IPR006171 TOPRIM domain trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 ProSitePatterns PS01300 RecR protein signature. 60 81 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 Pfam PF02132 RecR protein 42 81 2.6E-18 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 SUPERFAMILY SSF111304 8 201 9.55E-75 T 13-10-2018 IPR023627 Recombination protein RecR trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 Gene3D G3DSA:1.10.8.420 7 56 3.9E-21 T 13-10-2018 trd_0204 350f0aaaf63ceb9410738e08c0e01d5a 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 201 102.728 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 trd_1166 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:1.10.1750.10 354 457 1.7E-31 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 trd_1166 9f2e7fdef381144f012865287487d25e 465 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 365 432 3.8E-26 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 trd_1166 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:1.10.8.60 285 353 6.8E-22 T 13-10-2018 trd_1166 9f2e7fdef381144f012865287487d25e 465 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 4 454 32.067 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 trd_1166 9f2e7fdef381144f012865287487d25e 465 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 7 451 7.9E-163 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 trd_1166 9f2e7fdef381144f012865287487d25e 465 SMART SM00760 363 432 7.9E-37 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 trd_1166 9f2e7fdef381144f012865287487d25e 465 SUPERFAMILY SSF48295 356 454 3.92E-31 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 trd_1166 9f2e7fdef381144f012865287487d25e 465 Pfam PF11638 DnaA N-terminal domain 5 65 9.0E-11 T 13-10-2018 IPR024633 DnaA N-terminal domain trd_1166 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:3.40.50.300 103 283 8.1E-53 T 13-10-2018 trd_1166 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 184 198 4.9E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like trd_1166 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 152 172 4.9E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like trd_1166 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 250 277 4.9E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like trd_1166 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 216 230 4.9E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like trd_1166 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 413 432 4.9E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like trd_1166 9f2e7fdef381144f012865287487d25e 465 ProSitePatterns PS01008 DnaA protein signature. 413 432 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 trd_1166 9f2e7fdef381144f012865287487d25e 465 Pfam PF00308 Bacterial dnaA protein 119 336 2.9E-94 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA trd_1166 9f2e7fdef381144f012865287487d25e 465 SUPERFAMILY SSF52540 119 331 8.9E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1166 9f2e7fdef381144f012865287487d25e 465 SMART SM00382 151 279 6.6E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1166 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:3.30.300.180 1 80 1.7E-20 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily trd_1044 bf759ba796661162f9dee56403fc9a0d 168 SMART SM00852 18 162 1.1E-30 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1044 bf759ba796661162f9dee56403fc9a0d 168 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 76 89 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 trd_1044 bf759ba796661162f9dee56403fc9a0d 168 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 157 1.3E-36 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1044 bf759ba796661162f9dee56403fc9a0d 168 SUPERFAMILY SSF53218 8 164 6.41E-46 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_1044 bf759ba796661162f9dee56403fc9a0d 168 Pfam PF00994 Probable molybdopterin binding domain 18 161 4.0E-34 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1044 bf759ba796661162f9dee56403fc9a0d 168 PIRSF PIRSF006443 1 168 9.9E-64 T 13-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 trd_1044 bf759ba796661162f9dee56403fc9a0d 168 Gene3D G3DSA:3.40.980.10 8 167 1.6E-49 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 Gene3D G3DSA:1.10.8.410 352 402 3.0E-28 T 13-10-2018 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 3.5E-41 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 Gene3D G3DSA:1.20.1330.10 42 351 2.0E-70 T 13-10-2018 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 PRINTS PR00207 Flagellin signature 74 93 7.5E-22 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 PRINTS PR00207 Flagellin signature 35 52 7.5E-22 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 PRINTS PR00207 Flagellin signature 109 132 7.5E-22 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 Pfam PF00700 Bacterial flagellin C-terminal helical region 317 401 2.5E-30 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 SUPERFAMILY SSF64518 1 402 2.09E-96 T 13-10-2018 trd_A0208 adf7efca71d0ede7591d1ebbceb58768 402 Gene3D G3DSA:3.30.70.2120 178 300 2.0E-70 T 13-10-2018 trd_A0634 2caccc47a1bf38f8dc7f4016d9d990e2 443 SUPERFAMILY SSF53822 77 425 5.81E-77 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_A0634 2caccc47a1bf38f8dc7f4016d9d990e2 443 Gene3D G3DSA:3.40.50.2300 84 416 7.2E-84 T 13-10-2018 trd_A0634 2caccc47a1bf38f8dc7f4016d9d990e2 443 Pfam PF13458 Periplasmic binding protein 78 425 7.1E-48 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_A0634 2caccc47a1bf38f8dc7f4016d9d990e2 443 Gene3D G3DSA:3.40.50.2300 198 327 7.2E-84 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.50.30.10 390 514 3.9E-77 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.30.470.20 249 348 1.3E-39 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF00391 PEP-utilising enzyme, mobile domain 427 508 9.3E-27 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:1.20.80.30 116 203 8.7E-102 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 SUPERFAMILY SSF56059 9 386 1.77E-144 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 297 4.1E-45 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 304 363 7.1E-12 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.30.1490.20 16 248 8.7E-102 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 9 875 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 PIRSF PIRSF000853 7 881 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 SUPERFAMILY SSF51621 517 875 4.19E-131 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:1.10.189.10 352 534 3.9E-77 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 SUPERFAMILY SSF52009 391 517 5.36E-39 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.20.20.60 537 876 9.6E-157 T 13-10-2018 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 455 466 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 524 873 1.3E-94 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 trd_0306 ac37d708a08f483d2d1aed849cf62bcf 882 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 765 783 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 Gene3D G3DSA:3.30.70.250 140 207 1.8E-93 T 13-10-2018 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 PRINTS PR01483 Fatty acid synthase signature 31 54 4.9E-5 T 13-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 PRINTS PR01483 Fatty acid synthase signature 10 29 4.9E-5 T 13-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 Gene3D G3DSA:3.40.366.10 20 294 1.8E-93 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 SUPERFAMILY SSF52151 19 304 9.16E-70 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 PIRSF PIRSF000446 15 316 3.8E-89 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 SUPERFAMILY SSF55048 142 201 1.83E-14 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 21 320 3.3E-50 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 16 298 3.3E-88 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 trd_1622 6dc5f776e89d897e2c631f22e29806e1 327 Pfam PF00698 Acyl transferase domain 20 290 8.0E-51 T 13-10-2018 IPR014043 Acyl transferase trd_0914 d19503fe9046a4d6d8d74d8b86a306a4 102 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 4.7E-35 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 trd_0914 d19503fe9046a4d6d8d74d8b86a306a4 102 SUPERFAMILY SSF111148 1 89 1.11E-32 T 13-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 trd_0914 d19503fe9046a4d6d8d74d8b86a306a4 102 PIRSF PIRSF029827 1 90 1.9E-29 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 trd_0914 d19503fe9046a4d6d8d74d8b86a306a4 102 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 4.0E-23 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 trd_0914 d19503fe9046a4d6d8d74d8b86a306a4 102 Gene3D G3DSA:1.10.3880.10 1 91 5.1E-35 T 13-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 trd_0914 d19503fe9046a4d6d8d74d8b86a306a4 102 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 24.339 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 440 584 6.9E-23 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 SUPERFAMILY SSF52467 186 378 3.74E-27 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 Gene3D G3DSA:3.40.50.970 19 204 6.9E-51 T 13-10-2018 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 461 480 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 225 351 4.2E-11 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 Gene3D G3DSA:3.40.50.1220 217 387 9.5E-32 T 13-10-2018 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 SUPERFAMILY SSF52518 400 588 5.0E-35 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 SUPERFAMILY SSF52518 21 211 4.17E-37 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 Gene3D G3DSA:3.40.50.970 393 589 3.0E-40 T 13-10-2018 trd_A0806 b8d0898256a7e1dd858aced7141d39d5 589 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 21 201 2.6E-41 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_1107 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 SUPERFAMILY SSF111352 4 378 1.96E-119 T 13-10-2018 trd_1107 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 TIGRFAM TIGR00836 amt: ammonium transporter 6 397 7.0E-129 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 trd_1107 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 Gene3D G3DSA:1.10.3430.10 1 402 2.7E-136 T 13-10-2018 IPR029020 Ammonium/urea transporter trd_1107 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 ProSitePatterns PS01219 Ammonium transporters signature. 154 179 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 trd_1107 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 Pfam PF00909 Ammonium Transporter Family 7 397 2.1E-116 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 Pfam PF13242 HAD-hyrolase-like 181 250 6.7E-10 T 13-10-2018 trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 107 4.9E-24 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 Gene3D G3DSA:3.40.50.1000 88 180 3.9E-66 T 13-10-2018 IPR023214 HAD superfamily trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 Gene3D G3DSA:3.40.50.1000 9 226 3.9E-66 T 13-10-2018 IPR023214 HAD superfamily trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 10 226 1.8E-37 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 SUPERFAMILY SSF56784 5 252 6.17E-51 T 13-10-2018 IPR036412 HAD-like superfamily trd_1283 e568b9ce95f2347e6ca41a87ecf89d7c 398 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 182 220 8.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 464 474 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 SUPERFAMILY SSF53613 221 526 3.6E-56 T 13-10-2018 IPR029056 Ribokinase-like trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 Gene3D G3DSA:3.40.50.10260 2 214 5.8E-53 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 Pfam PF01256 Carbohydrate kinase 246 521 1.2E-43 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 210 22.013 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 223 525 3.0E-49 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 12 211 5.6E-37 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 Pfam PF03853 YjeF-related protein N-terminus 26 189 1.4E-35 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 223 529 21.249 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 PIRSF PIRSF017184 359 531 3.0E-34 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 PIRSF PIRSF017184 3 349 2.1E-68 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 Gene3D G3DSA:3.40.1190.20 221 538 2.6E-71 T 13-10-2018 IPR029056 Ribokinase-like trd_0815 0ef350ba4ffe1b9e4a6e5149b8514171 544 SUPERFAMILY SSF64153 4 244 3.66E-51 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 trd_1546 0df64bfc8b25d167a6f5c8d7a772f9d0 320 Pfam PF00296 Luciferase-like monooxygenase 19 286 4.1E-53 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_1546 0df64bfc8b25d167a6f5c8d7a772f9d0 320 SUPERFAMILY SSF51679 20 304 1.34E-54 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1546 0df64bfc8b25d167a6f5c8d7a772f9d0 320 Gene3D G3DSA:3.20.20.30 7 310 5.5E-61 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_0305 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:3.40.50.300 322 678 8.1E-110 T 13-10-2018 trd_0305 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:1.10.486.10 424 594 8.1E-110 T 13-10-2018 trd_0305 f407df5904b95b06047402d6aba3d370 771 Pfam PF13361 UvrD-like helicase C-terminal domain 318 661 4.4E-68 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 trd_0305 f407df5904b95b06047402d6aba3d370 771 Pfam PF00580 UvrD/REP helicase N-terminal domain 50 312 3.1E-76 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 trd_0305 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:1.10.10.160 151 230 5.7E-100 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily trd_0305 f407df5904b95b06047402d6aba3d370 771 SUPERFAMILY SSF52540 42 687 5.1E-177 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0305 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:3.40.50.300 49 314 5.7E-100 T 13-10-2018 trd_A0265 e995e3f48be9842276278d88b88a87ec 288 SUPERFAMILY SSF51695 17 272 1.15E-71 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 trd_A0265 e995e3f48be9842276278d88b88a87ec 288 Gene3D G3DSA:3.20.20.190 10 276 2.4E-74 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 trd_A0265 e995e3f48be9842276278d88b88a87ec 288 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 23 267 2.4E-44 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 trd_1002 b6be573edf49d95a41c8e21ca2be9e9e 327 SUPERFAMILY SSF64005 83 304 3.14E-84 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 trd_1002 b6be573edf49d95a41c8e21ca2be9e9e 327 Pfam PF01255 Putative undecaprenyl diphosphate synthase 92 308 1.6E-79 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 trd_1002 b6be573edf49d95a41c8e21ca2be9e9e 327 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 85 308 2.2E-85 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 trd_1002 b6be573edf49d95a41c8e21ca2be9e9e 327 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 254 271 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 trd_1002 b6be573edf49d95a41c8e21ca2be9e9e 327 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 85 309 40.474 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 trd_1002 b6be573edf49d95a41c8e21ca2be9e9e 327 Gene3D G3DSA:3.40.1180.10 41 303 1.8E-95 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 Pfam PF13229 Right handed beta helix region 206 374 8.5E-12 T 13-10-2018 IPR039448 Right handed beta helix domain trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SMART SM00710 285 307 5.1 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SMART SM00710 97 135 860.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SMART SM00710 158 180 720.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SMART SM00710 308 330 300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SMART SM00710 213 234 650.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SMART SM00710 181 211 3500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SUPERFAMILY SSF51126 26 248 9.58E-21 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 Gene3D G3DSA:2.160.20.10 3 399 8.2E-25 T 13-10-2018 IPR012334 Pectin lyase fold trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 SUPERFAMILY SSF51126 201 375 9.42E-13 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 279 322 6.6E-5 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 trd_A0679 9815c24a6a4ad4be36ba4ddc8cac04c3 401 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 152 192 2.3E-5 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 trd_0215 695c5d170ababc879977f275ae59880c 218 PIRSF PIRSF006305 1 189 5.0E-46 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 trd_0215 695c5d170ababc879977f275ae59880c 218 Pfam PF02545 Maf-like protein 3 183 2.7E-48 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 trd_0215 695c5d170ababc879977f275ae59880c 218 Gene3D G3DSA:3.90.950.10 1 187 8.4E-58 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like trd_0215 695c5d170ababc879977f275ae59880c 218 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 2.5E-41 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 trd_0215 695c5d170ababc879977f275ae59880c 218 SUPERFAMILY SSF52972 2 183 3.66E-55 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like trd_0215 695c5d170ababc879977f275ae59880c 218 Hamap MF_00528 Septum formation protein Maf [maf]. 2 188 27.098 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 SUPERFAMILY SSF53850 2 189 6.84E-58 T 13-10-2018 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 221 228 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 SUPERFAMILY SSF55021 177 274 7.42E-25 T 13-10-2018 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 Pfam PF01842 ACT domain 200 259 7.1E-7 T 13-10-2018 IPR002912 ACT domain trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 Pfam PF00800 Prephenate dehydratase 4 184 2.6E-66 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 Gene3D G3DSA:3.40.190.10 5 180 3.6E-62 T 13-10-2018 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 PIRSF PIRSF001500 1 275 1.4E-84 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 Gene3D G3DSA:3.40.190.10 85 172 3.6E-62 T 13-10-2018 trd_0095 1337dc1ff7859b51246daa70d1ea7467 285 Gene3D G3DSA:3.30.70.260 184 277 8.8E-29 T 13-10-2018 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 Gene3D G3DSA:3.40.50.720 1 182 8.9E-79 T 13-10-2018 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 SUPERFAMILY SSF51735 3 183 4.01E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 Gene3D G3DSA:1.10.3730.40 183 334 4.8E-70 T 13-10-2018 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 2 329 44.758 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 1.2E-66 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 178 8.7E-74 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 PIRSF PIRSF000116 5 206 3.6E-38 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 PIRSF PIRSF000116 203 333 2.4E-14 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 329 2.2E-134 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 trd_0625 ee8fbe2462e3aab7ce173dd3eda52be4 335 SUPERFAMILY SSF48179 184 330 2.21E-70 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_0096 c532835b17c3b06b4c5ed42ba4bd63a2 195 Gene3D G3DSA:3.40.50.150 1 191 6.7E-55 T 13-10-2018 trd_0096 c532835b17c3b06b4c5ed42ba4bd63a2 195 SUPERFAMILY SSF53335 1 180 2.67E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0096 c532835b17c3b06b4c5ed42ba4bd63a2 195 Pfam PF03602 Conserved hypothetical protein 95 1 179 4.8E-46 T 13-10-2018 trd_0096 c532835b17c3b06b4c5ed42ba4bd63a2 195 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 116 122 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 trd_0096 c532835b17c3b06b4c5ed42ba4bd63a2 195 PIRSF PIRSF004553 1 183 2.3E-44 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 trd_1790 238c02bfb9fa6d63a1c5878f1018495d 309 Pfam PF00583 Acetyltransferase (GNAT) family 46 115 7.2E-8 T 13-10-2018 IPR000182 GNAT domain trd_1790 238c02bfb9fa6d63a1c5878f1018495d 309 Pfam PF00583 Acetyltransferase (GNAT) family 189 277 1.6E-4 T 13-10-2018 IPR000182 GNAT domain trd_1790 238c02bfb9fa6d63a1c5878f1018495d 309 Gene3D G3DSA:3.40.630.30 3 120 7.1E-16 T 13-10-2018 trd_1790 238c02bfb9fa6d63a1c5878f1018495d 309 SUPERFAMILY SSF55729 1 114 1.66E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_1790 238c02bfb9fa6d63a1c5878f1018495d 309 Gene3D G3DSA:3.40.630.30 169 301 5.3E-13 T 13-10-2018 trd_1790 238c02bfb9fa6d63a1c5878f1018495d 309 SUPERFAMILY SSF55729 128 301 4.87E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Pfam PF01225 Mur ligase family, catalytic domain 30 101 4.3E-12 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 SUPERFAMILY SSF53244 320 456 1.83E-34 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Pfam PF02875 Mur ligase family, glutamate ligase domain 328 398 3.2E-13 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 2 457 30.833 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 SUPERFAMILY SSF53623 107 314 9.81E-45 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 456 1.8E-117 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Pfam PF08245 Mur ligase middle domain 111 298 9.9E-35 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Gene3D G3DSA:3.40.1390.10 1 86 2.6E-22 T 13-10-2018 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 SUPERFAMILY SSF63418 18 101 1.31E-25 T 13-10-2018 IPR035911 MurE/MurF, N-terminal trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Gene3D G3DSA:3.40.1190.10 87 315 6.6E-65 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0059 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Gene3D G3DSA:3.90.190.20 318 465 2.1E-40 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0707 4504335ed0c5259e0784873e909edf4f 201 SUPERFAMILY SSF81452 7 199 9.94E-56 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0707 4504335ed0c5259e0784873e909edf4f 201 Gene3D G3DSA:1.20.120.80 19 200 1.7E-53 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0707 4504335ed0c5259e0784873e909edf4f 201 Pfam PF00510 Cytochrome c oxidase subunit III 5 198 8.1E-22 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 SUPERFAMILY SSF51905 4 371 9.71E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.50.50.60 6 357 2.1E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.1E-6 T 13-10-2018 trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 193 208 8.1E-6 T 13-10-2018 trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.30.9.10 85 315 2.1E-89 T 13-10-2018 trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 Pfam PF01266 FAD dependent oxidoreductase 5 352 9.9E-60 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0120 91c1b36943e2aee3b530e45c6a6a9739 388 SUPERFAMILY SSF54373 221 315 1.31E-6 T 13-10-2018 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 23 246 3.0E-68 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 SMART SM00535 33 173 1.5E-49 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 ProSitePatterns PS00517 Ribonuclease III family signature. 61 69 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 SUPERFAMILY SSF54768 134 246 4.0E-25 T 13-10-2018 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 Gene3D G3DSA:1.10.1520.10 18 168 3.9E-42 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 Gene3D G3DSA:3.30.160.20 173 249 1.3E-22 T 13-10-2018 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 SUPERFAMILY SSF69065 14 170 1.74E-44 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 Hamap MF_00104 Ribonuclease 3 [rnc]. 21 243 29.73 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 Pfam PF00035 Double-stranded RNA binding motif 180 246 1.2E-15 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 Pfam PF14622 Ribonuclease-III-like 33 166 4.1E-32 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 trd_1376 a192e9c331334b245d3fd8145ae3d0c7 252 SMART SM00358 180 247 1.7E-22 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 Gene3D G3DSA:3.40.50.1820 16 284 2.3E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 SUPERFAMILY SSF53474 14 282 5.71E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 228 242 4.7E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 4.7E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 4.7E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 4.7E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 Pfam PF00561 alpha/beta hydrolase fold 37 271 7.7E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00412 Epoxide hydrolase signature 62 77 3.1E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00412 Epoxide hydrolase signature 259 281 3.1E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0930 ac06da37ae985171b7c3538a97fcae0b 285 PRINTS PR00412 Epoxide hydrolase signature 120 133 3.1E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_1754 0252cbad211b6a5f9b376db92308326e 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 186 9.6E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1754 0252cbad211b6a5f9b376db92308326e 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 202 9.6E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1754 0252cbad211b6a5f9b376db92308326e 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 214 9.6E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1754 0252cbad211b6a5f9b376db92308326e 246 Gene3D G3DSA:3.40.50.12740 15 232 3.5E-36 T 13-10-2018 trd_1754 0252cbad211b6a5f9b376db92308326e 246 SMART SM00421 169 226 6.1E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1754 0252cbad211b6a5f9b376db92308326e 246 SUPERFAMILY SSF52172 15 149 6.63E-8 T 13-10-2018 IPR011006 CheY-like superfamily trd_1754 0252cbad211b6a5f9b376db92308326e 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 171 226 5.2E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1754 0252cbad211b6a5f9b376db92308326e 246 SUPERFAMILY SSF46894 166 232 1.6E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_0236 4b79e092b0242974775641a939432e68 151 SUPERFAMILY SSF51182 2 147 5.28E-42 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_0236 4b79e092b0242974775641a939432e68 151 Gene3D G3DSA:2.60.120.10 1 150 1.7E-55 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_0236 4b79e092b0242974775641a939432e68 151 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 2 146 1.6E-17 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 trd_0236 4b79e092b0242974775641a939432e68 151 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 2 147 2.0E-17 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 trd_A0621 6f7a1d6c00fb06cfe4f420763f3360ab 452 ProSitePatterns PS00216 Sugar transport proteins signature 1. 74 89 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_A0621 6f7a1d6c00fb06cfe4f420763f3360ab 452 ProSitePatterns PS00216 Sugar transport proteins signature 1. 310 325 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_A0621 6f7a1d6c00fb06cfe4f420763f3360ab 452 ProSitePatterns PS00217 Sugar transport proteins signature 2. 116 141 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_A0621 6f7a1d6c00fb06cfe4f420763f3360ab 452 Gene3D G3DSA:1.20.1250.20 14 445 2.1E-100 T 13-10-2018 trd_A0621 6f7a1d6c00fb06cfe4f420763f3360ab 452 SUPERFAMILY SSF103473 8 442 2.22E-94 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0621 6f7a1d6c00fb06cfe4f420763f3360ab 452 Pfam PF00083 Sugar (and other) transporter 53 444 7.2E-57 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 trd_0829 df2840804c0c602251e37519f1808768 117 Pfam PF00453 Ribosomal protein L20 3 109 1.3E-47 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 5.0E-5 T 13-10-2018 trd_0829 df2840804c0c602251e37519f1808768 117 Gene3D G3DSA:1.10.1900.20 56 117 1.8E-29 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 SUPERFAMILY SSF74731 2 116 2.88E-47 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 7.3E-47 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 Gene3D G3DSA:1.10.720.90 2 55 6.6E-23 T 13-10-2018 trd_0829 df2840804c0c602251e37519f1808768 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.455 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.0E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.0E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0829 df2840804c0c602251e37519f1808768 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.0E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 Pfam PF01979 Amidohydrolase family 49 379 2.2E-22 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 SUPERFAMILY SSF51338 2 381 9.4E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 PIRSF PIRSF038994 12 384 6.7E-113 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 Gene3D G3DSA:3.20.20.140 53 351 8.3E-118 T 13-10-2018 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 41 377 1.3E-83 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 Gene3D G3DSA:2.30.40.10 20 378 8.3E-118 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_A0707 346e3bac3ae3852fbc28497b54b62390 407 SUPERFAMILY SSF51556 53 351 3.16E-86 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0351 58311cdf8d659d3f2902ee1c13adcf0b 164 Gene3D G3DSA:3.10.450.50 41 159 8.6E-7 T 13-10-2018 trd_A0351 58311cdf8d659d3f2902ee1c13adcf0b 164 SUPERFAMILY SSF54427 39 163 6.71E-7 T 13-10-2018 IPR032710 NTF2-like domain superfamily trd_1689 aac22601d8cd65e9f89bfc984e921963 193 SMART SM01235 28 156 2.0E-58 T 13-10-2018 IPR025992 Haem-binding domain trd_1689 aac22601d8cd65e9f89bfc984e921963 193 Pfam PF14376 Haem-binding domain 43 151 2.7E-31 T 13-10-2018 IPR025992 Haem-binding domain trd_1689 aac22601d8cd65e9f89bfc984e921963 193 SUPERFAMILY SSF46626 22 150 6.7E-5 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 SUPERFAMILY SSF55781 65 253 7.19E-56 T 13-10-2018 trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 SMART SM00346 7 97 7.1E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 SUPERFAMILY SSF46785 9 81 5.82E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 Gene3D G3DSA:3.30.450.40 80 257 2.7E-62 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 Gene3D G3DSA:1.10.10.10 3 79 2.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 Pfam PF01614 Bacterial transcriptional regulator 125 249 1.6E-39 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal trd_0252 0fbd0c669b9a4a73a1f746593a31d414 275 Pfam PF09339 IclR helix-turn-helix domain 10 56 2.8E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 4.1E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 4.1E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 4.1E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 4.1E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 4.1E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 Gene3D G3DSA:3.90.226.10 3 203 4.5E-76 T 13-10-2018 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 Pfam PF00574 Clp protease 19 198 3.5E-78 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 41.382 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 trd_1202 0a6cb28218c00603ce3fe37aeab1765b 205 SUPERFAMILY SSF52096 18 200 1.62E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 SUPERFAMILY SSF52440 4 138 1.06E-38 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 PIRSF PIRSF039102 2 361 5.9E-121 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 Gene3D G3DSA:3.30.1490.20 154 226 3.9E-81 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 Pfam PF01820 D-ala D-ala ligase N-terminus 6 129 1.8E-31 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 353 43.248 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 Gene3D G3DSA:3.30.470.20 128 355 3.9E-81 T 13-10-2018 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 294 323 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 Gene3D G3DSA:3.40.50.20 1 127 5.8E-40 T 13-10-2018 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 352 5.7E-114 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 Pfam PF07478 D-ala D-ala ligase C-terminus 146 350 1.0E-77 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 106 117 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_0065 6403e382fc5c231d2040bc972dc3e0f9 372 SUPERFAMILY SSF56059 139 357 8.49E-57 T 13-10-2018 trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 SUPERFAMILY SSF90123 30 349 1.83E-69 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 SUPERFAMILY SSF52540 397 624 1.43E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 Gene3D G3DSA:1.20.1560.10 16 352 3.5E-77 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 SMART SM00382 413 599 3.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 Pfam PF00005 ABC transporter 405 553 2.9E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 Pfam PF00664 ABC transporter transmembrane region 44 320 1.5E-40 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 ProSitePatterns PS00211 ABC transporters family signature. 525 539 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1543 3efb6ed29d58ce6015b7a0238a2831d1 630 Gene3D G3DSA:3.40.50.300 353 626 1.4E-88 T 13-10-2018 trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 13 317 1.3E-108 T 13-10-2018 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 123 2.3E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 157 275 2.9E-12 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 Gene3D G3DSA:3.10.180.10 156 329 4.7E-46 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 SUPERFAMILY SSF54593 8 276 1.14E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 253 274 - T 13-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 trd_0322 668c80f9dd28f6a794faff59dd5d373f 331 Gene3D G3DSA:3.10.180.10 3 140 6.4E-40 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0565 120213d185beb8c47ab251f2fbdca60a 312 SUPERFAMILY SSF56281 2 263 8.52E-59 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0565 120213d185beb8c47ab251f2fbdca60a 312 Pfam PF00753 Metallo-beta-lactamase superfamily 23 221 1.5E-26 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0565 120213d185beb8c47ab251f2fbdca60a 312 Gene3D G3DSA:3.60.15.10 5 257 1.1E-64 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0565 120213d185beb8c47ab251f2fbdca60a 312 SMART SM00849 21 221 3.1E-32 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1671 eeb92b16a7538a62c36abda915add1e0 564 Gene3D G3DSA:3.40.190.10 43 300 3.9E-71 T 13-10-2018 trd_1671 eeb92b16a7538a62c36abda915add1e0 564 PIRSF PIRSF002741 37 536 1.6E-84 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1671 eeb92b16a7538a62c36abda915add1e0 564 SUPERFAMILY SSF53850 66 544 5.27E-112 T 13-10-2018 trd_1671 eeb92b16a7538a62c36abda915add1e0 564 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 115 478 5.6E-81 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1671 eeb92b16a7538a62c36abda915add1e0 564 Gene3D G3DSA:3.10.105.10 311 526 2.8E-34 T 13-10-2018 trd_0072 82aa8d226860f45977b43e04160233a1 320 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 251 264 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_0072 82aa8d226860f45977b43e04160233a1 320 Pfam PF00294 pfkB family carbohydrate kinase 3 305 1.1E-74 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_0072 82aa8d226860f45977b43e04160233a1 320 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 34 58 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_0072 82aa8d226860f45977b43e04160233a1 320 PRINTS PR00990 Ribokinase signature 222 233 3.6E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0072 82aa8d226860f45977b43e04160233a1 320 PRINTS PR00990 Ribokinase signature 29 48 3.6E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 trd_0072 82aa8d226860f45977b43e04160233a1 320 Gene3D G3DSA:3.40.1190.20 2 319 5.2E-111 T 13-10-2018 IPR029056 Ribokinase-like trd_0072 82aa8d226860f45977b43e04160233a1 320 SUPERFAMILY SSF53613 2 313 3.9E-91 T 13-10-2018 IPR029056 Ribokinase-like trd_1571 a96c7b06f3328a01a5cd3f78fbcc2f41 163 SMART SM00287 93 159 2.9E-5 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_1571 a96c7b06f3328a01a5cd3f78fbcc2f41 163 Gene3D G3DSA:2.30.30.40 85 158 3.8E-11 T 13-10-2018 trd_1571 a96c7b06f3328a01a5cd3f78fbcc2f41 163 Pfam PF08239 Bacterial SH3 domain 103 158 1.9E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 Gene3D G3DSA:3.40.250.10 3 149 8.2E-37 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 Pfam PF00581 Rhodanese-like domain 164 276 7.2E-14 T 13-10-2018 IPR001763 Rhodanese-like domain trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 Pfam PF00581 Rhodanese-like domain 13 131 6.9E-15 T 13-10-2018 IPR001763 Rhodanese-like domain trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 SUPERFAMILY SSF52821 156 286 1.22E-32 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 Gene3D G3DSA:3.40.250.10 152 289 8.0E-34 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 SMART SM00450 161 281 5.3E-21 T 13-10-2018 IPR001763 Rhodanese-like domain trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 SMART SM00450 11 135 1.8E-15 T 13-10-2018 IPR001763 Rhodanese-like domain trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 trd_0517 6d867ce8589e0355a98eed6c3b791f6e 295 SUPERFAMILY SSF52821 8 149 2.49E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_0399 7feb9ee1bb44fbded7476293a465f67d 269 Hamap MF_00443 Thiazole synthase [thiG]. 16 269 45.268 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 trd_0399 7feb9ee1bb44fbded7476293a465f67d 269 Gene3D G3DSA:3.20.20.70 15 269 7.1E-121 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0399 7feb9ee1bb44fbded7476293a465f67d 269 SUPERFAMILY SSF110399 16 255 1.23E-88 T 13-10-2018 trd_0399 7feb9ee1bb44fbded7476293a465f67d 269 Pfam PF05690 Thiazole biosynthesis protein ThiG 18 263 2.2E-113 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 trd_1035 088e8f26bc3049ecf936317df44b909c 817 SUPERFAMILY SSF52540 485 804 2.04E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1035 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:1.10.8.60 718 813 1.9E-31 T 13-10-2018 trd_1035 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:3.40.50.300 151 342 1.3E-70 T 13-10-2018 trd_1035 088e8f26bc3049ecf936317df44b909c 817 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.7E-18 T 13-10-2018 IPR004176 Clp, N-terminal trd_1035 088e8f26bc3049ecf936317df44b909c 817 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 19 67 3.7E-18 T 13-10-2018 IPR004176 Clp, N-terminal trd_1035 088e8f26bc3049ecf936317df44b909c 817 SMART SM00382 200 344 1.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1035 088e8f26bc3049ecf936317df44b909c 817 SMART SM00382 536 679 5.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1035 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:3.40.50.300 343 468 7.4E-39 T 13-10-2018 trd_1035 088e8f26bc3049ecf936317df44b909c 817 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 206 334 1.0E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1035 088e8f26bc3049ecf936317df44b909c 817 SUPERFAMILY SSF52540 161 469 4.5E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1035 088e8f26bc3049ecf936317df44b909c 817 SUPERFAMILY SSF81923 6 153 2.83E-35 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 trd_1035 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:3.40.50.300 469 717 1.3E-98 T 13-10-2018 trd_1035 088e8f26bc3049ecf936317df44b909c 817 Pfam PF02151 UvrB/uvrC motif 419 448 7.8E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 trd_1035 088e8f26bc3049ecf936317df44b909c 817 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 718 797 2.9E-29 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_1035 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:1.10.1780.10 4 150 2.3E-59 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 trd_1035 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 647 661 2.0E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_1035 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 540 558 2.0E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_1035 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 585 603 2.0E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_1035 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 614 632 2.0E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 trd_1035 088e8f26bc3049ecf936317df44b909c 817 SMART SM01086 718 807 5.1E-42 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_1035 088e8f26bc3049ecf936317df44b909c 817 Pfam PF07724 AAA domain (Cdc48 subfamily) 535 711 1.0E-52 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1035 088e8f26bc3049ecf936317df44b909c 817 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 SUPERFAMILY SSF81442 18 528 2.35E-180 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 21 527 3.9E-211 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 Gene3D G3DSA:1.20.210.10 8 534 1.2E-208 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 Gene3D G3DSA:1.10.287.70 569 635 3.7E-5 T 13-10-2018 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 251 305 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 249 270 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 94 118 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 319 340 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 169 187 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 295 310 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 136 148 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 382 401 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 67 90 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 20 45 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 432 453 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 354 372 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 217 3.2E-100 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0708 4a2b5ac909a98fb309f4d65765b63142 639 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 29 476 1.6E-149 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0040 2ff708776d81bde79b98893526b6e5a8 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 47 3.5E-4 T 13-10-2018 IPR001451 Hexapeptide repeat trd_0040 2ff708776d81bde79b98893526b6e5a8 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 123 1.0E-4 T 13-10-2018 IPR001451 Hexapeptide repeat trd_0040 2ff708776d81bde79b98893526b6e5a8 178 Gene3D G3DSA:2.160.10.10 4 174 2.5E-59 T 13-10-2018 trd_0040 2ff708776d81bde79b98893526b6e5a8 178 SUPERFAMILY SSF51161 7 171 6.1E-46 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 3.7E-32 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 SUPERFAMILY SSF47729 1 90 7.65E-30 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 Gene3D G3DSA:4.10.520.10 1 92 8.6E-35 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 SMART SM00411 1 90 9.8E-34 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 6.9E-15 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 6.9E-15 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 trd_0831 b4b696ed9c16ceb7379e6846480f11fa 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 6.9E-15 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 SUPERFAMILY SSF52540 270 486 2.01E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 Pfam PF00005 ABC transporter 21 173 1.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 SUPERFAMILY SSF52540 3 233 9.67E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 Gene3D G3DSA:3.40.50.300 1 254 3.0E-64 T 13-10-2018 trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 Pfam PF00005 ABC transporter 272 426 9.9E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 Gene3D G3DSA:3.40.50.300 260 500 2.4E-51 T 13-10-2018 trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 SMART SM00382 30 221 4.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0592 5c210b973a18b4ee906fb59d3160a324 501 SMART SM00382 281 475 8.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 SMART SM01008 16 134 1.3E-39 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Gene3D G3DSA:3.90.1170.50 1 134 3.5E-41 T 13-10-2018 trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 SUPERFAMILY SSF56003 126 776 8.5E-201 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 16 134 3.3E-25 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 150 714 5.0E-177 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 SUPERFAMILY SSF54665 2 155 4.06E-41 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Gene3D G3DSA:3.30.365.10 190 286 4.4E-74 T 13-10-2018 trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Gene3D G3DSA:3.30.365.10 372 754 4.9E-134 T 13-10-2018 trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Gene3D G3DSA:3.30.365.10 460 629 4.9E-134 T 13-10-2018 trd_A0337 e1a233390b7ee26bc6a395cd0c12e981 787 Gene3D G3DSA:3.30.365.10 148 363 4.4E-74 T 13-10-2018 trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 SUPERFAMILY SSF52402 9 251 1.48E-46 T 13-10-2018 trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 Gene3D G3DSA:2.30.30.280 222 281 3.3E-11 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 Pfam PF03054 tRNA methyl transferase 11 350 8.9E-89 T 13-10-2018 trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 Gene3D G3DSA:2.40.30.10 282 362 1.4E-11 T 13-10-2018 trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 Gene3D G3DSA:3.40.50.620 4 210 3.1E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 10 352 33.63 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 trd_1079 48b6e02eb03c4bcd70b039f51c2d258f 370 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 11 350 1.6E-71 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 448 460 1.2E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 469 484 1.2E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 324 332 1.2E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 300 313 1.2E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 484 495 1.2E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF04542 Sigma-70 region 2 277 345 2.0E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF00140 Sigma-70 factor, region 1.2 105 133 2.7E-13 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.601.10 247 348 5.6E-50 T 13-10-2018 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 300 313 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 272 508 1.4E-111 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88659 349 423 2.01E-21 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.10.10 349 424 1.5E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF04539 Sigma-70 region 3 355 430 5.6E-28 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 17 509 36.214 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF04545 Sigma-70, region 4 444 497 2.4E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 272 497 2.3E-38 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88946 104 346 1.7E-50 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 469 495 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.10.10 426 509 7.7E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.20.120.1810 101 156 8.8E-8 T 13-10-2018 trd_1713 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88659 407 507 3.36E-29 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1363 7654cc1c278d9cc346e92ebe3108f0b7 310 SUPERFAMILY SSF53807 2 288 1.26E-44 T 13-10-2018 trd_1363 7654cc1c278d9cc346e92ebe3108f0b7 310 Pfam PF01497 Periplasmic binding protein 3 264 1.6E-17 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain trd_1363 7654cc1c278d9cc346e92ebe3108f0b7 310 Gene3D G3DSA:3.40.50.1980 153 286 6.2E-20 T 13-10-2018 trd_1363 7654cc1c278d9cc346e92ebe3108f0b7 310 Gene3D G3DSA:3.40.50.1980 1 150 5.7E-27 T 13-10-2018 trd_0187 db0136f82614cb519d7124545be97a5c 304 SMART SM00382 31 217 1.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0187 db0136f82614cb519d7124545be97a5c 304 SUPERFAMILY SSF52540 4 226 1.24E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0187 db0136f82614cb519d7124545be97a5c 304 Gene3D G3DSA:3.40.50.300 1 232 4.7E-64 T 13-10-2018 trd_0187 db0136f82614cb519d7124545be97a5c 304 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0187 db0136f82614cb519d7124545be97a5c 304 Pfam PF00005 ABC transporter 22 161 1.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 65 73 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 Gene3D G3DSA:3.20.20.150 2 278 3.4E-101 T 13-10-2018 trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 Pfam PF01261 Xylose isomerase-like TIM barrel 18 236 5.6E-41 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 SUPERFAMILY SSF51658 2 278 4.71E-92 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 SMART SM00518 2 276 1.7E-109 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 273 1.5E-86 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 Hamap MF_00152 Probable endonuclease 4 [nfo]. 1 276 41.385 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 trd_1666 c6eb526e0e5e2ebaa181ed6a7e1c5a97 281 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 212 228 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 trd_1745 820778ebd8cacecdb4a29bd1ab6d3f14 491 PIRSF PIRSF012702 1 491 7.6E-159 T 13-10-2018 IPR009197 Microcystin LR degradation protein MlrC trd_1745 820778ebd8cacecdb4a29bd1ab6d3f14 491 Pfam PF07364 Metallopeptidase family M81 5 292 5.2E-98 T 13-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal trd_1745 820778ebd8cacecdb4a29bd1ab6d3f14 491 Pfam PF07171 MlrC C-terminus 303 479 3.0E-59 T 13-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal trd_0959 6281a74ca974c5928745e21f63ec49f9 137 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 18 134 2.5E-59 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0959 6281a74ca974c5928745e21f63ec49f9 137 Gene3D G3DSA:3.30.420.80 13 137 1.8E-55 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0959 6281a74ca974c5928745e21f63ec49f9 137 PIRSF PIRSF002131 9 137 4.1E-53 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 trd_0959 6281a74ca974c5928745e21f63ec49f9 137 SUPERFAMILY SSF53137 22 136 1.02E-50 T 13-10-2018 trd_0959 6281a74ca974c5928745e21f63ec49f9 137 Pfam PF00411 Ribosomal protein S11 27 136 1.6E-48 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 trd_0959 6281a74ca974c5928745e21f63ec49f9 137 ProSitePatterns PS00054 Ribosomal protein S11 signature. 105 127 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site trd_0959 6281a74ca974c5928745e21f63ec49f9 137 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 137 33.866 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 Gene3D G3DSA:3.40.50.720 13 287 2.4E-64 T 13-10-2018 trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 Pfam PF00106 short chain dehydrogenase 17 207 4.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 SUPERFAMILY SSF51735 14 274 3.8E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 4.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 4.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 4.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 4.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 4.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 235 255 4.8E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0338 0006b6e0bc8f1b65a24528db13bdcc0c 288 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_1861 70745594e1c00019b916e6adc941e36b 338 Gene3D G3DSA:1.10.3720.10 90 331 2.6E-23 T 13-10-2018 IPR035906 MetI-like superfamily trd_1861 70745594e1c00019b916e6adc941e36b 338 SUPERFAMILY SSF161098 95 323 3.49E-16 T 13-10-2018 IPR035906 MetI-like superfamily trd_1861 70745594e1c00019b916e6adc941e36b 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 336 2.3E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 PIRSF PIRSF036979 14 313 1.0E-99 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 SUPERFAMILY SSF52768 14 310 1.42E-98 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily trd_0529 fa0317a682a1dc177a6896df58d0f339 324 TIGRFAM TIGR01230 agmatinase: agmatinase 29 307 5.3E-68 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 Gene3D G3DSA:3.40.800.10 2 322 7.5E-111 T 13-10-2018 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 Pfam PF00491 Arginase family 35 305 7.7E-87 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 PRINTS PR00116 Arginase signature 121 136 4.2E-13 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_0529 fa0317a682a1dc177a6896df58d0f339 324 PRINTS PR00116 Arginase signature 234 263 4.2E-13 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_1598 eaade5d156738e7f122508128df8d1ef 822 Gene3D G3DSA:2.60.40.10 589 672 6.5E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_1598 eaade5d156738e7f122508128df8d1ef 822 SUPERFAMILY SSF49373 599 667 3.37E-7 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments trd_1598 eaade5d156738e7f122508128df8d1ef 822 SMART SM00634 588 677 9.3E-5 T 13-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain trd_1598 eaade5d156738e7f122508128df8d1ef 822 Pfam PF02369 Bacterial Ig-like domain (group 1) 597 676 5.5E-8 T 13-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain trd_0039 58928177692ebd003c41d304b20c2f41 403 Gene3D G3DSA:1.20.140.10 235 385 9.3E-47 T 13-10-2018 trd_0039 58928177692ebd003c41d304b20c2f41 403 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 2.8E-38 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 trd_0039 58928177692ebd003c41d304b20c2f41 403 SUPERFAMILY SSF47203 227 384 1.18E-51 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_0039 58928177692ebd003c41d304b20c2f41 403 SUPERFAMILY SSF56645 1 242 2.36E-88 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_0039 58928177692ebd003c41d304b20c2f41 403 Gene3D G3DSA:2.40.110.10 122 234 5.3E-43 T 13-10-2018 trd_0039 58928177692ebd003c41d304b20c2f41 403 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 217 5.5E-25 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 trd_0039 58928177692ebd003c41d304b20c2f41 403 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 1.1E-43 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 trd_0039 58928177692ebd003c41d304b20c2f41 403 Gene3D G3DSA:1.10.540.10 1 120 3.3E-42 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 SUPERFAMILY SSF81442 18 482 7.19E-50 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 PRINTS PR01165 Cytochrome c oxidase subunit I signature 116 128 5.3E-7 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 PRINTS PR01165 Cytochrome c oxidase subunit I signature 344 362 5.3E-7 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 PRINTS PR01165 Cytochrome c oxidase subunit I signature 372 391 5.3E-7 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 PRINTS PR01165 Cytochrome c oxidase subunit I signature 237 258 5.3E-7 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 PRINTS PR01165 Cytochrome c oxidase subunit I signature 421 442 5.3E-7 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 Gene3D G3DSA:1.20.210.10 5 491 4.2E-68 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0454 a0a3d7400223a3eb49d8c36d7b6587cd 494 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 18 458 2.9E-42 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1336 a71d690c86eb763d2d70498ee3cb3d32 537 Gene3D G3DSA:1.10.260.150 234 527 3.3E-56 T 13-10-2018 trd_1336 a71d690c86eb763d2d70498ee3cb3d32 537 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 265 438 1.3E-25 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain trd_1336 a71d690c86eb763d2d70498ee3cb3d32 537 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 264 437 4.9E-22 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain trd_1083 e9866be1afffcb11211479cdd881df17 293 Gene3D G3DSA:3.40.1190.20 8 281 4.7E-45 T 13-10-2018 IPR029056 Ribokinase-like trd_1083 e9866be1afffcb11211479cdd881df17 293 Pfam PF00294 pfkB family carbohydrate kinase 189 273 8.3E-12 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_1083 e9866be1afffcb11211479cdd881df17 293 SUPERFAMILY SSF53613 9 282 2.81E-34 T 13-10-2018 IPR029056 Ribokinase-like trd_0106 7cfe104c81e38bc30cdc310b806b9541 230 SUPERFAMILY SSF51366 4 212 3.14E-51 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0106 7cfe104c81e38bc30cdc310b806b9541 230 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 209 1.4E-45 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 trd_0106 7cfe104c81e38bc30cdc310b806b9541 230 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 214 35.068 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 trd_0106 7cfe104c81e38bc30cdc310b806b9541 230 Gene3D G3DSA:3.20.20.70 4 213 3.5E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0741 3c89b49b2a89662cd5f954a4273b4198 210 SUPERFAMILY SSF52972 3 195 1.88E-69 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like trd_0741 3c89b49b2a89662cd5f954a4273b4198 210 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 6 188 2.9E-56 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 trd_0741 3c89b49b2a89662cd5f954a4273b4198 210 Pfam PF01725 Ham1 family 6 190 2.6E-59 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 trd_0741 3c89b49b2a89662cd5f954a4273b4198 210 Gene3D G3DSA:3.90.950.10 1 195 2.1E-76 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like trd_0741 3c89b49b2a89662cd5f954a4273b4198 210 Hamap MF_01405 dITP/XTP pyrophosphatase. 4 195 49.005 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 trd_A0878 65cda1eacdc35a7a8c892df49006b8d8 555 Gene3D G3DSA:2.60.40.10 32 130 1.3E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_A0878 65cda1eacdc35a7a8c892df49006b8d8 555 Gene3D G3DSA:2.130.10.10 367 552 4.5E-12 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_A0878 65cda1eacdc35a7a8c892df49006b8d8 555 SUPERFAMILY SSF50969 261 547 3.92E-17 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like trd_A0878 65cda1eacdc35a7a8c892df49006b8d8 555 SUPERFAMILY SSF49373 32 128 8.37E-5 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments trd_1117 d8fa89f2b97d273d1ed3a7039f46bd28 653 SUPERFAMILY SSF56801 13 625 6.41E-163 T 13-10-2018 trd_1117 d8fa89f2b97d273d1ed3a7039f46bd28 653 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 13 60 2.6E-11 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 trd_1117 d8fa89f2b97d273d1ed3a7039f46bd28 653 Pfam PF13193 AMP-binding enzyme C-terminal domain 514 592 3.1E-24 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_1117 d8fa89f2b97d273d1ed3a7039f46bd28 653 Gene3D G3DSA:3.30.300.30 502 629 1.0E-25 T 13-10-2018 trd_1117 d8fa89f2b97d273d1ed3a7039f46bd28 653 Pfam PF00501 AMP-binding enzyme 67 505 1.3E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_1117 d8fa89f2b97d273d1ed3a7039f46bd28 653 Gene3D G3DSA:3.40.50.12780 50 501 1.2E-98 T 13-10-2018 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 Gene3D G3DSA:3.30.499.20 7 272 1.3E-105 T 13-10-2018 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 SUPERFAMILY SSF53732 3 421 1.7E-148 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 6 418 2.9E-160 T 13-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 Pfam PF00330 Aconitase family (aconitate hydratase) 11 413 8.6E-100 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 Gene3D G3DSA:3.30.499.10 275 421 5.1E-57 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 6 421 49.238 T 13-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 PRINTS PR00415 Aconitase family signature 354 367 3.5E-16 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 PRINTS PR00415 Aconitase family signature 105 113 3.5E-16 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 PRINTS PR00415 Aconitase family signature 130 145 3.5E-16 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 PRINTS PR00415 Aconitase family signature 192 205 3.5E-16 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 PRINTS PR00415 Aconitase family signature 116 129 3.5E-16 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 PRINTS PR00415 Aconitase family signature 206 219 3.5E-16 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 ProSitePatterns PS00450 Aconitase family signature 1. 294 310 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 TIGRFAM TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit 6 420 1.6E-193 T 13-10-2018 IPR011823 3-isopropylmalate dehydratase, large subunit, bacteria GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 trd_1691 fe4d7118c9a04f7c2399496d6e91b031 422 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 7 418 1.3E-180 T 13-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 trd_0323 e0189b46f2b9114d18144f1821b429af 418 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 183 383 9.6E-68 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal trd_0323 e0189b46f2b9114d18144f1821b429af 418 SUPERFAMILY SSF56645 2 176 1.7E-55 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_0323 e0189b46f2b9114d18144f1821b429af 418 PIRSF PIRSF500125 1 412 1.1E-211 T 13-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein trd_0323 e0189b46f2b9114d18144f1821b429af 418 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 2 175 2.7E-61 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal trd_0323 e0189b46f2b9114d18144f1821b429af 418 Gene3D G3DSA:2.40.110.10 48 176 4.8E-43 T 13-10-2018 trd_0323 e0189b46f2b9114d18144f1821b429af 418 Gene3D G3DSA:1.10.3140.10 1 45 3.9E-6 T 13-10-2018 trd_0323 e0189b46f2b9114d18144f1821b429af 418 PIRSF PIRSF000331 1 395 2.1E-166 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH trd_0323 e0189b46f2b9114d18144f1821b429af 418 SUPERFAMILY SSF47203 166 369 1.74E-49 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_0323 e0189b46f2b9114d18144f1821b429af 418 Gene3D G3DSA:1.20.140.10 181 398 2.0E-69 T 13-10-2018 trd_0247 3b32b6d5273abf89a7d55ba6076a0235 126 Pfam PF05336 L-rhamnose mutarotase 4 109 1.9E-28 T 13-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 trd_0247 3b32b6d5273abf89a7d55ba6076a0235 126 Gene3D G3DSA:3.30.70.100 6 99 8.6E-17 T 13-10-2018 trd_0247 3b32b6d5273abf89a7d55ba6076a0235 126 SUPERFAMILY SSF54909 1 110 3.38E-28 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 3.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 3.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 3.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 3.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 3.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 3.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 194 0.0018 T 13-10-2018 trd_A0012 a51070a882d38eac19267c43a569a537 259 SUPERFAMILY SSF51735 13 258 3.61E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 7.4E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 7.4E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 7.4E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0012 a51070a882d38eac19267c43a569a537 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 257 1.2E-68 T 13-10-2018 trd_A0012 a51070a882d38eac19267c43a569a537 259 Gene3D G3DSA:3.40.50.720 1 258 2.5E-91 T 13-10-2018 trd_A0012 a51070a882d38eac19267c43a569a537 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_0404 7211fceadfadcafd33288af1852c1177 128 SUPERFAMILY SSF103481 29 124 7.06E-9 T 13-10-2018 trd_0404 7211fceadfadcafd33288af1852c1177 128 Gene3D G3DSA:1.10.3730.20 23 126 1.8E-6 T 13-10-2018 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:1.20.1270.10 502 604 6.2E-25 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 383 402 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.1E-72 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF100920 379 535 2.88E-63 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:2.60.34.10 373 501 2.9E-59 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 600 8.0E-298 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF53067 186 377 1.48E-69 T 13-10-2018 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.420.40 180 361 4.1E-159 T 13-10-2018 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF53067 4 184 1.01E-66 T 13-10-2018 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 37.898 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF100934 502 607 2.94E-12 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.420.40 5 372 4.1E-159 T 13-10-2018 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.90.640.10 224 311 4.1E-159 T 13-10-2018 trd_1640 e02928deee9eb25dc07183d6cec8b026 633 Pfam PF00012 Hsp70 protein 4 601 2.8E-264 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 Gene3D G3DSA:3.40.50.300 42 234 2.4E-32 T 13-10-2018 trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 Pfam PF00270 DEAD/DEAH box helicase 56 222 9.4E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 SMART SM00487 50 253 9.7E-20 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 Gene3D G3DSA:3.40.50.300 264 462 2.3E-20 T 13-10-2018 trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 Pfam PF00271 Helicase conserved C-terminal domain 329 399 3.2E-10 T 13-10-2018 IPR001650 Helicase, C-terminal trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 SMART SM00490 320 400 5.6E-12 T 13-10-2018 IPR001650 Helicase, C-terminal trd_A0719 98b1f8c7c98f887f64462c22b2499861 839 SUPERFAMILY SSF52540 62 411 1.52E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1400 c3ad7d4d247dbc6ee752f8f7a954369e 258 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 246 1.5E-9 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal trd_1400 c3ad7d4d247dbc6ee752f8f7a954369e 258 Gene3D G3DSA:3.40.50.300 6 253 1.4E-59 T 13-10-2018 trd_1400 c3ad7d4d247dbc6ee752f8f7a954369e 258 SMART SM00382 31 225 8.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1400 c3ad7d4d247dbc6ee752f8f7a954369e 258 Pfam PF00005 ABC transporter 22 177 1.2E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1400 c3ad7d4d247dbc6ee752f8f7a954369e 258 SUPERFAMILY SSF52540 5 245 7.0E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0672 19505df5d6f73b712dc96f00f59b1837 334 SUPERFAMILY SSF52540 22 299 1.13E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0672 19505df5d6f73b712dc96f00f59b1837 334 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 54 184 3.6E-62 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 trd_A0672 19505df5d6f73b712dc96f00f59b1837 334 Gene3D G3DSA:3.40.50.300 15 218 6.5E-48 T 13-10-2018 trd_A0672 19505df5d6f73b712dc96f00f59b1837 334 PIRSF PIRSF002849 4 328 8.9E-133 T 13-10-2018 trd_A0672 19505df5d6f73b712dc96f00f59b1837 334 Gene3D G3DSA:1.10.8.300 219 323 1.7E-31 T 13-10-2018 trd_0114 1f5948a678b24c1cd26813324b8a09da 99 Gene3D G3DSA:3.30.1320.10 1 99 3.9E-34 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0114 1f5948a678b24c1cd26813324b8a09da 99 SUPERFAMILY SSF54565 1 84 1.31E-33 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0114 1f5948a678b24c1cd26813324b8a09da 99 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 2.4E-31 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0114 1f5948a678b24c1cd26813324b8a09da 99 Pfam PF00886 Ribosomal protein S16 8 66 6.2E-24 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0114 1f5948a678b24c1cd26813324b8a09da 99 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 76 24.204 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0388 5c96050eca3afc26d6a2be1116e2f6eb 534 Gene3D G3DSA:3.20.20.140 62 487 1.1E-151 T 13-10-2018 trd_0388 5c96050eca3afc26d6a2be1116e2f6eb 534 Pfam PF07969 Amidohydrolase family 50 528 1.4E-119 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_0388 5c96050eca3afc26d6a2be1116e2f6eb 534 SUPERFAMILY SSF51338 1 531 1.4E-25 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0388 5c96050eca3afc26d6a2be1116e2f6eb 534 Gene3D G3DSA:3.10.310.70 80 201 1.1E-151 T 13-10-2018 trd_0388 5c96050eca3afc26d6a2be1116e2f6eb 534 Gene3D G3DSA:2.30.40.10 8 504 1.1E-151 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0388 5c96050eca3afc26d6a2be1116e2f6eb 534 SUPERFAMILY SSF51556 61 488 2.13E-34 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_1138 b31fd826ce8660d2880da19abe92e7dc 483 Gene3D G3DSA:3.40.190.10 86 480 2.2E-55 T 13-10-2018 trd_1138 b31fd826ce8660d2880da19abe92e7dc 483 SUPERFAMILY SSF53850 87 438 7.58E-56 T 13-10-2018 trd_1138 b31fd826ce8660d2880da19abe92e7dc 483 Pfam PF13416 Bacterial extracellular solute-binding protein 111 421 2.4E-34 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_0448 95c52965695f92cd67a9541f026b7cba 344 TIGRFAM TIGR03989 Rxyl_3153: NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family 3 343 1.5E-149 T 13-10-2018 IPR023921 Alcohol dehydrogenase, zinc-type, actinomycetes KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 trd_0448 95c52965695f92cd67a9541f026b7cba 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 33 47 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_0448 95c52965695f92cd67a9541f026b7cba 344 SUPERFAMILY SSF51735 131 308 1.28E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0448 95c52965695f92cd67a9541f026b7cba 344 SUPERFAMILY SSF50129 3 165 1.19E-51 T 13-10-2018 IPR011032 GroES-like superfamily trd_0448 95c52965695f92cd67a9541f026b7cba 344 SMART SM00829 3 341 3.3E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_0448 95c52965695f92cd67a9541f026b7cba 344 Pfam PF00107 Zinc-binding dehydrogenase 169 300 7.6E-26 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_0448 95c52965695f92cd67a9541f026b7cba 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 2 95 3.5E-25 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_0448 95c52965695f92cd67a9541f026b7cba 344 SUPERFAMILY SSF50129 294 343 1.84E-9 T 13-10-2018 IPR011032 GroES-like superfamily trd_0448 95c52965695f92cd67a9541f026b7cba 344 Gene3D G3DSA:3.90.180.10 2 337 5.4E-123 T 13-10-2018 trd_0448 95c52965695f92cd67a9541f026b7cba 344 Gene3D G3DSA:3.40.50.720 146 286 5.4E-123 T 13-10-2018 trd_0885 8babe7e5d018808d6a9c112e1c57903f 491 Pfam PF07171 MlrC C-terminus 290 479 1.5E-32 T 13-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal trd_0885 8babe7e5d018808d6a9c112e1c57903f 491 Pfam PF07364 Metallopeptidase family M81 2 280 3.0E-55 T 13-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Gene3D G3DSA:3.40.50.1970 181 354 1.8E-58 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 ProSitePatterns PS01128 Shikimate kinase signature. 58 83 - T 13-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Gene3D G3DSA:1.20.1090.10 355 547 4.8E-53 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 195 535 1.0E-101 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Gene3D G3DSA:3.40.50.300 2 180 5.5E-50 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 5 20 1.3E-16 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 29 42 1.3E-16 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 75 84 1.3E-16 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 96 113 1.3E-16 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 57 65 1.3E-16 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Hamap MF_00109 Shikimate kinase [aroK]. 2 173 25.288 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 183 546 58.83 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 SUPERFAMILY SSF56796 194 541 1.15E-94 T 13-10-2018 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Pfam PF01761 3-dehydroquinate synthase 250 511 4.8E-89 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 SUPERFAMILY SSF52540 4 175 5.83E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0920 ab480d1037ff4913d25fd3ab410a32d7 562 Pfam PF01202 Shikimate kinase 11 172 4.0E-41 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 SUPERFAMILY SSF56003 129 780 1.44E-218 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 154 716 5.2E-193 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 SMART SM01008 21 137 1.1E-49 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 20 289 2.5E-120 T 13-10-2018 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 137 3.4E-27 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 SUPERFAMILY SSF54665 5 160 1.13E-45 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 138 367 2.5E-120 T 13-10-2018 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 375 756 2.2E-155 T 13-10-2018 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.90.1170.50 36 137 2.5E-120 T 13-10-2018 trd_1207 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 462 631 2.2E-155 T 13-10-2018 trd_0107 eb660328e826675a084e0a98065bea4c 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 63 387 2.5E-46 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_0107 eb660328e826675a084e0a98065bea4c 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 11 400 53.826 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0107 eb660328e826675a084e0a98065bea4c 404 PIRSF PIRSF001413 2 404 9.7E-167 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0107 eb660328e826675a084e0a98065bea4c 404 Gene3D G3DSA:3.40.50.1100 63 393 2.0E-187 T 13-10-2018 trd_0107 eb660328e826675a084e0a98065bea4c 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 16 398 1.5E-192 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0107 eb660328e826675a084e0a98065bea4c 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 90 104 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_0107 eb660328e826675a084e0a98065bea4c 404 SUPERFAMILY SSF53686 12 398 6.29E-149 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_0107 eb660328e826675a084e0a98065bea4c 404 Gene3D G3DSA:3.40.50.1100 19 215 2.0E-187 T 13-10-2018 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 SUPERFAMILY SSF81271 283 367 3.71E-33 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 Pfam PF06071 Protein of unknown function (DUF933) 283 366 1.2E-36 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 86 104 1.2E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.2E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.2E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 6 367 7.3E-96 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 367 38.662 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 SUPERFAMILY SSF52540 5 305 6.96E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:3.40.50.300 5 282 1.1E-128 T 13-10-2018 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 PIRSF PIRSF006641 1 367 3.7E-100 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:3.10.20.30 48 365 1.1E-128 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 Pfam PF01926 50S ribosome-binding GTPase 5 114 1.4E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 trd_1799 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:1.10.150.300 112 203 1.1E-128 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 16 257 2.8E-22 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 123 133 5.9E-6 T 13-10-2018 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 238 257 5.9E-6 T 13-10-2018 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 261 273 5.9E-6 T 13-10-2018 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 ProSitePatterns PS01229 Hypothetical cof family signature 2. 238 260 - T 13-10-2018 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 Pfam PF08282 haloacid dehalogenase-like hydrolase 17 113 3.6E-19 T 13-10-2018 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 Pfam PF08282 haloacid dehalogenase-like hydrolase 207 284 2.6E-22 T 13-10-2018 trd_1917 0707f57ca896bd4d4311d62844060dd0 299 SUPERFAMILY SSF56784 14 289 7.24E-53 T 13-10-2018 IPR036412 HAD-like superfamily trd_1917 0707f57ca896bd4d4311d62844060dd0 299 Gene3D G3DSA:3.40.50.1000 15 285 4.3E-50 T 13-10-2018 IPR023214 HAD superfamily trd_1917 0707f57ca896bd4d4311d62844060dd0 299 Gene3D G3DSA:3.30.1240.10 95 213 4.3E-50 T 13-10-2018 trd_1310 fe6d83934dfb71c242ec30905f489f60 160 SMART SM00232 1 149 9.6E-5 T 13-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 trd_1310 fe6d83934dfb71c242ec30905f489f60 160 Gene3D G3DSA:3.40.140.10 1 160 3.4E-41 T 13-10-2018 trd_1310 fe6d83934dfb71c242ec30905f489f60 160 SUPERFAMILY SSF102712 1 154 2.22E-30 T 13-10-2018 trd_1310 fe6d83934dfb71c242ec30905f489f60 160 Pfam PF14464 Prokaryotic homologs of the JAB domain 7 133 1.4E-22 T 13-10-2018 IPR028090 JAB domain, prokaryotic trd_0060 da3cc501a1c90d2a1d6bd9f33ab24872 339 Pfam PF00953 Glycosyl transferase family 4 98 262 1.0E-36 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 trd_0060 da3cc501a1c90d2a1d6bd9f33ab24872 339 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 24 338 21.194 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_0060 da3cc501a1c90d2a1d6bd9f33ab24872 339 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 39 335 6.3E-92 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF00027 Cyclic nucleotide-binding domain 38 124 3.1E-13 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 SUPERFAMILY SSF51206 11 144 1.31E-24 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF00571 CBS domain 168 217 1.8E-8 T 13-10-2018 IPR000644 CBS domain trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF00571 CBS domain 229 279 1.4E-8 T 13-10-2018 IPR000644 CBS domain trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 SMART SM00116 171 219 5.0E-4 T 13-10-2018 IPR000644 CBS domain trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 SMART SM00116 236 283 3.6E-6 T 13-10-2018 IPR000644 CBS domain trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF03445 Putative nucleotidyltransferase DUF294 310 447 8.2E-47 T 13-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Gene3D G3DSA:2.60.120.10 9 150 7.8E-21 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 SUPERFAMILY SSF54631 165 279 1.89E-27 T 13-10-2018 trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 SMART SM00100 18 137 4.1E-9 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Gene3D G3DSA:3.10.580.10 159 285 2.2E-32 T 13-10-2018 trd_1116 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 484 628 1.2E-48 T 13-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding trd_A0079 c1f2f5e50207ebd236f571887275c5aa 412 Gene3D G3DSA:3.40.50.12030 186 404 9.5E-102 T 13-10-2018 trd_A0079 c1f2f5e50207ebd236f571887275c5aa 412 Gene3D G3DSA:3.40.50.12020 1 177 8.6E-65 T 13-10-2018 trd_A0079 c1f2f5e50207ebd236f571887275c5aa 412 Pfam PF06792 Uncharacterised protein family (UPF0261) 2 401 3.0E-178 T 13-10-2018 IPR008322 Uncharacterised protein family UPF0261 trd_A0079 c1f2f5e50207ebd236f571887275c5aa 412 PIRSF PIRSF033271 1 405 2.7E-160 T 13-10-2018 IPR008322 Uncharacterised protein family UPF0261 trd_0355 7a32731660a5cd1ac1b7e0d986766483 297 Gene3D G3DSA:1.25.40.10 5 100 2.0E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0355 7a32731660a5cd1ac1b7e0d986766483 297 SUPERFAMILY SSF48452 20 92 1.98E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0355 7a32731660a5cd1ac1b7e0d986766483 297 Pfam PF13432 Tetratricopeptide repeat 21 82 4.2E-8 T 13-10-2018 trd_0355 7a32731660a5cd1ac1b7e0d986766483 297 SMART SM00028 49 82 4.2E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 Pfam PF03193 RsgA GTPase 73 246 4.2E-51 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 Pfam PF16745 RsgA N-terminal domain 16 70 5.9E-8 T 13-10-2018 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 SUPERFAMILY SSF52540 90 307 2.49E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 Gene3D G3DSA:3.40.50.300 77 246 4.1E-46 T 13-10-2018 trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 SUPERFAMILY SSF50249 16 77 2.83E-7 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 Gene3D G3DSA:1.10.40.50 247 318 3.0E-22 T 13-10-2018 trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 13 311 34.555 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 trd_A0151 4d3f172cf542459a2ad300051b7abe66 329 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 52 304 1.6E-67 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 Pfam PF01980 Uncharacterised protein family UPF0066 29 133 5.7E-27 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 Gene3D G3DSA:2.40.30.70 7 147 3.2E-34 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 Gene3D G3DSA:3.30.1330.130 151 252 2.2E-9 T 13-10-2018 trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 SUPERFAMILY SSF143555 157 242 1.44E-11 T 13-10-2018 trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 SUPERFAMILY SSF118196 6 142 1.96E-38 T 13-10-2018 IPR036413 YaeB-like superfamily trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 165 241 8.5E-11 T 13-10-2018 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain trd_1151 e53feba10598d2bdebf3455a87f47ae2 271 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 5 138 4.0E-33 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 814 955 5.4E-50 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 SMART SM00861 614 809 5.6E-45 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_0562 1ec27fc343ff34f22c05914acee371cb 965 SUPERFAMILY SSF52518 167 545 4.64E-79 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Gene3D G3DSA:3.40.50.970 179 551 2.8E-132 T 13-10-2018 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 SUPERFAMILY SSF52518 596 815 2.06E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Gene3D G3DSA:3.40.50.11610 750 953 2.4E-163 T 13-10-2018 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Gene3D G3DSA:3.40.50.12470 572 831 2.4E-163 T 13-10-2018 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 42 76 1.1E-7 T 13-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF02779 Transketolase, pyrimidine binding domain 614 810 8.7E-57 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Gene3D G3DSA:1.10.287.1150 98 178 1.5E-11 T 13-10-2018 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 42 954 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF00676 Dehydrogenase E1 component 246 539 1.5E-56 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 trd_0562 1ec27fc343ff34f22c05914acee371cb 965 PIRSF PIRSF000157 27 957 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.40.50.1000 379 643 1.3E-78 T 13-10-2018 IPR023214 HAD superfamily trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:2.70.150.20 200 310 1.3E-33 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Pfam PF00122 E1-E2 ATPase 207 378 1.1E-44 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Pfam PF00702 haloacid dehalogenase-like hydrolase 396 605 5.7E-37 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF81665 159 392 1.96E-9 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF56784 397 691 7.7E-49 T 13-10-2018 IPR036412 HAD-like superfamily trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF55008 13 80 4.06E-13 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.30.70.100 12 81 3.3E-11 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.40.1110.10 409 523 1.3E-78 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 157 694 5.0E-160 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 400 406 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 398 412 1.7E-22 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 516 527 1.7E-22 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 256 270 1.7E-22 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 627 1.7E-22 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 591 610 1.7E-22 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 549 1.7E-22 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 157 694 5.2E-134 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 Pfam PF00403 Heavy-metal-associated domain 20 79 8.5E-9 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 138 694 2.5E-120 T 13-10-2018 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF81653 209 306 1.28E-25 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 494 670 7.1E-42 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_1528 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 178 432 8.8E-30 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_1708 7bb42982e161f145a1ddc43937b9faac 237 Pfam PF02391 MoaE protein 90 198 8.7E-45 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 trd_1708 7bb42982e161f145a1ddc43937b9faac 237 Gene3D G3DSA:3.90.1170.40 83 227 3.4E-56 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 trd_1708 7bb42982e161f145a1ddc43937b9faac 237 Pfam PF02597 ThiS family 5 81 1.2E-20 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 trd_1708 7bb42982e161f145a1ddc43937b9faac 237 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 3 81 1.0E-15 T 13-10-2018 IPR010038 MoaD, archaeal-type trd_1708 7bb42982e161f145a1ddc43937b9faac 237 SUPERFAMILY SSF54285 1 79 1.37E-21 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp trd_1708 7bb42982e161f145a1ddc43937b9faac 237 Gene3D G3DSA:3.10.20.30 3 81 1.3E-24 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_1708 7bb42982e161f145a1ddc43937b9faac 237 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 3 81 2.8E-20 T 13-10-2018 trd_1708 7bb42982e161f145a1ddc43937b9faac 237 SUPERFAMILY SSF54690 85 218 1.01E-49 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 trd_A0648 68e170c42f728960aa6aeee9f00a1900 450 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 358 1.6E-75 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_A0648 68e170c42f728960aa6aeee9f00a1900 450 Gene3D G3DSA:3.40.50.12240 15 440 9.3E-157 T 13-10-2018 trd_A0648 68e170c42f728960aa6aeee9f00a1900 450 SMART SM00382 161 342 5.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0648 68e170c42f728960aa6aeee9f00a1900 450 SUPERFAMILY SSF52540 96 364 1.08E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0648 68e170c42f728960aa6aeee9f00a1900 450 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_A0648 68e170c42f728960aa6aeee9f00a1900 450 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 5 438 1.7E-185 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 TIGRFAM TIGR00838 argH: argininosuccinate lyase 7 456 3.9E-183 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 151 169 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 235 262 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 106 124 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 Gene3D G3DSA:1.20.200.10 123 451 2.5E-182 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 Hamap MF_00006 Argininosuccinate lyase [argH]. 6 456 43.261 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 SUPERFAMILY SSF48557 7 453 2.04E-140 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 Gene3D G3DSA:1.10.40.30 364 435 2.5E-182 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 Pfam PF00206 Lyase 10 304 1.9E-78 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 Gene3D G3DSA:1.10.275.10 29 233 2.5E-182 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 279 295 6.5E-67 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 146 166 6.5E-67 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 197 213 6.5E-67 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 235 259 6.5E-67 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 105 127 6.5E-67 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 314 333 6.5E-67 T 13-10-2018 trd_0166 4a479e8525e3a626b19efa2b55f719b6 485 Pfam PF14698 Argininosuccinate lyase C-terminal 367 421 3.9E-19 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 Pfam PF00355 Rieske [2Fe-2S] domain 43 127 1.6E-19 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 Gene3D G3DSA:2.102.10.10 42 166 3.9E-145 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 Gene3D G3DSA:3.90.380.10 24 427 3.9E-145 T 13-10-2018 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 183 205 7.6E-44 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 57 72 7.6E-44 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 142 168 7.6E-44 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 78 98 7.6E-44 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 27 52 7.6E-44 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 99 119 7.6E-44 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 85 108 - T 13-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 SUPERFAMILY SSF50022 10 157 3.14E-49 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 SUPERFAMILY SSF55961 158 436 4.47E-49 T 13-10-2018 trd_A0341 a1f11c4371bdb2c4f321732860e276dc 455 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 164 410 1.2E-19 T 13-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 Pfam PF04055 Radical SAM superfamily 163 334 2.6E-35 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 Pfam PF00919 Uncharacterized protein family UPF0004 22 121 5.3E-25 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 Gene3D G3DSA:3.40.50.12160 21 149 1.5E-30 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 Gene3D G3DSA:3.80.30.20 157 390 4.0E-96 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 22 443 4.0E-145 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 22 444 1.2E-131 T 13-10-2018 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 21 447 65.411 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 162 182 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 SUPERFAMILY SSF102114 143 382 5.62E-67 T 13-10-2018 trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 Pfam PF01938 TRAM domain 388 446 7.1E-12 T 13-10-2018 IPR002792 TRAM domain trd_0354 326349ed2d048adf5d4018c0cf2dab34 458 SMART SM00729 158 373 4.7E-66 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_A0870 d41331a62b69b57c589562a05dea7e9c 350 Gene3D G3DSA:3.30.160.60 317 348 8.8E-7 T 13-10-2018 trd_A0870 d41331a62b69b57c589562a05dea7e9c 350 Gene3D G3DSA:1.10.8.1150 41 112 6.0E-14 T 13-10-2018 trd_A0870 d41331a62b69b57c589562a05dea7e9c 350 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 4 344 4.8E-69 T 13-10-2018 IPR003770 Endolytic murein transglycosylase trd_A0870 d41331a62b69b57c589562a05dea7e9c 350 Pfam PF02618 YceG-like family 47 345 3.3E-84 T 13-10-2018 IPR003770 Endolytic murein transglycosylase trd_A0870 d41331a62b69b57c589562a05dea7e9c 350 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 11 350 33.911 T 13-10-2018 IPR003770 Endolytic murein transglycosylase trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 565 586 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 SUPERFAMILY SSF51998 183 724 9.77E-162 T 13-10-2018 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 SUPERFAMILY SSF48168 25 182 2.75E-41 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 396 407 3.1E-44 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 472 494 3.1E-44 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 500 523 3.1E-44 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 434 457 3.1E-44 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 575 602 3.1E-44 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 259 278 3.1E-44 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 Pfam PF02867 Ribonucleotide reductase, barrel domain 184 719 1.5E-159 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 103 180 5.2E-24 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 106 721 5.3E-193 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1409 fb333d65ed924c5afa39c9557b2cff0e 770 Gene3D G3DSA:3.20.70.20 72 729 2.1E-211 T 13-10-2018 trd_A0709 bf2fd7b3701f70f9b2cc15141b06ffd3 417 SUPERFAMILY SSF53067 76 373 4.95E-15 T 13-10-2018 trd_A0709 bf2fd7b3701f70f9b2cc15141b06ffd3 417 Gene3D G3DSA:3.30.420.40 160 363 4.8E-125 T 13-10-2018 trd_A0709 bf2fd7b3701f70f9b2cc15141b06ffd3 417 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 9 403 38.14 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 trd_A0709 bf2fd7b3701f70f9b2cc15141b06ffd3 417 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 10 402 8.5E-104 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 trd_A0709 bf2fd7b3701f70f9b2cc15141b06ffd3 417 Gene3D G3DSA:3.30.420.40 16 398 4.8E-125 T 13-10-2018 trd_1845 8621c8512a90d12ae1af56d4202d72d8 432 Pfam PF07969 Amidohydrolase family 40 401 2.1E-42 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_1845 8621c8512a90d12ae1af56d4202d72d8 432 Gene3D G3DSA:3.20.20.140 53 360 1.9E-165 T 13-10-2018 trd_1845 8621c8512a90d12ae1af56d4202d72d8 432 Gene3D G3DSA:2.30.40.10 9 404 1.9E-165 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_1845 8621c8512a90d12ae1af56d4202d72d8 432 SUPERFAMILY SSF51338 1 403 6.29E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_1845 8621c8512a90d12ae1af56d4202d72d8 432 SUPERFAMILY SSF51556 52 372 2.64E-99 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 SUPERFAMILY SSF53335 96 274 8.35E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 SMART SM00138 22 285 3.8E-48 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 SUPERFAMILY SSF52738 465 650 1.96E-50 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 Pfam PF01339 CheB methylesterase 468 643 2.0E-46 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 Pfam PF01739 CheR methyltransferase, SAM binding domain 96 277 6.2E-46 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 PRINTS PR00996 Glutamate methyltransferase family signature 225 239 1.8E-28 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 PRINTS PR00996 Glutamate methyltransferase family signature 89 101 1.8E-28 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 PRINTS PR00996 Glutamate methyltransferase family signature 159 175 1.8E-28 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 PRINTS PR00996 Glutamate methyltransferase family signature 244 267 1.8E-28 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 PRINTS PR00996 Glutamate methyltransferase family signature 125 145 1.8E-28 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 Gene3D G3DSA:3.40.50.150 95 288 9.5E-55 T 13-10-2018 trd_A0210 5f3bc6bebb4cdc3d2ab842ff0c0c5d25 657 Gene3D G3DSA:3.40.50.180 460 647 1.2E-53 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 Pfam PF01709 Transcriptional regulator 5 238 6.7E-90 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:1.10.10.200 1 80 5.0E-33 T 13-10-2018 IPR017856 Integrase-like, N-terminal trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 SUPERFAMILY SSF75625 3 244 2.62E-88 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:3.30.70.980 86 237 2.6E-53 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:3.30.70.980 135 204 2.6E-53 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 2.9E-92 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1132 4761dbf705023b3c2e321c0b9f3d7d02 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 33.412 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0615 4bb1e40947f0313ddbe319a1cd957db2 248 Gene3D G3DSA:3.30.2320.60 2 129 1.4E-18 T 13-10-2018 trd_0615 4bb1e40947f0313ddbe319a1cd957db2 248 Pfam PF12401 Protein of unknown function (DUF2662) 5 118 5.3E-28 T 13-10-2018 IPR022128 Domain of unknown function DUF3662 trd_0615 4bb1e40947f0313ddbe319a1cd957db2 248 SUPERFAMILY SSF49879 116 243 3.44E-31 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 trd_0615 4bb1e40947f0313ddbe319a1cd957db2 248 SMART SM00240 173 223 2.1E-15 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 trd_0615 4bb1e40947f0313ddbe319a1cd957db2 248 Gene3D G3DSA:2.60.200.20 130 245 9.1E-32 T 13-10-2018 trd_0615 4bb1e40947f0313ddbe319a1cd957db2 248 Pfam PF00498 FHA domain 174 237 6.0E-18 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 Gene3D G3DSA:3.40.50.1100 16 422 3.0E-172 T 13-10-2018 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 27 429 41.425 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 PIRSF PIRSF001413 12 435 1.2E-121 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 79 416 4.4E-47 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 SUPERFAMILY SSF53686 33 427 9.43E-116 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 PIRSF PIRSF500824 4 438 4.7E-206 T 13-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 16 431 3.5E-202 T 13-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 Gene3D G3DSA:3.40.50.1100 17 241 3.0E-172 T 13-10-2018 trd_A0200 011ec0110ce4ede3fbd92134c9bcbbb7 455 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 108 122 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 trd_1148 ba6e1144a7c5a6acd02b542ce6bc50a7 369 Gene3D G3DSA:3.40.720.10 4 341 7.2E-105 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 trd_1148 ba6e1144a7c5a6acd02b542ce6bc50a7 369 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 6 245 5.4E-28 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 trd_1148 ba6e1144a7c5a6acd02b542ce6bc50a7 369 Gene3D G3DSA:3.30.1360.110 226 326 7.2E-105 T 13-10-2018 IPR023116 Phosphonoacetate hydrolase, insert domain superfamily KEGG: 00440+3.11.1.2 trd_1148 ba6e1144a7c5a6acd02b542ce6bc50a7 369 SUPERFAMILY SSF53649 1 349 3.6E-64 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 trd_A0776 5026cdec0144693059b26a09118b7f9e 161 Gene3D G3DSA:3.10.20.30 1 78 3.2E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_A0776 5026cdec0144693059b26a09118b7f9e 161 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 trd_A0776 5026cdec0144693059b26a09118b7f9e 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 62 1.0E-8 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 trd_A0776 5026cdec0144693059b26a09118b7f9e 161 SUPERFAMILY SSF47741 87 156 1.44E-37 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily trd_A0776 5026cdec0144693059b26a09118b7f9e 161 Pfam PF01799 [2Fe-2S] binding domain 76 148 6.4E-35 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 trd_A0776 5026cdec0144693059b26a09118b7f9e 161 SUPERFAMILY SSF54292 4 91 1.84E-26 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_A0776 5026cdec0144693059b26a09118b7f9e 161 Gene3D G3DSA:1.10.150.120 79 160 1.4E-38 T 13-10-2018 trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 PIRSF PIRSF000447 1 412 1.6E-171 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 SMART SM00825 Beta-ketoacyl synthase 4 412 2.5E-17 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 245 5.5E-60 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 408 1.4E-183 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 367 4.4E-37 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 SUPERFAMILY SSF53901 3 250 3.67E-79 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 Gene3D G3DSA:3.40.47.10 255 399 1.0E-54 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 Gene3D G3DSA:3.40.47.10 1 253 3.6E-97 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_A0447 958a7f514c088c3efc9255250fa0e3f3 415 SUPERFAMILY SSF53901 213 410 4.55E-75 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0901 81dd62e2979ef7ae30c703216f187fcb 470 SUPERFAMILY SSF103025 21 330 2.51E-50 T 13-10-2018 trd_0901 81dd62e2979ef7ae30c703216f187fcb 470 PIRSF PIRSF006487 364 428 80.0 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_0901 81dd62e2979ef7ae30c703216f187fcb 470 PIRSF PIRSF006487 5 362 2.9E-23 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_0901 81dd62e2979ef7ae30c703216f187fcb 470 Pfam PF01571 Aminomethyltransferase folate-binding domain 30 255 1.4E-39 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain trd_0901 81dd62e2979ef7ae30c703216f187fcb 470 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 316 423 2.9E-7 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 trd_0910 4628946615d5ed56da500255bb1819cd 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 3.0E-65 T 13-10-2018 trd_0910 4628946615d5ed56da500255bb1819cd 261 Gene3D G3DSA:3.40.50.720 6 247 1.5E-80 T 13-10-2018 trd_0910 4628946615d5ed56da500255bb1819cd 261 SUPERFAMILY SSF51735 6 247 1.12E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.0E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.0E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.0E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 8.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0910 4628946615d5ed56da500255bb1819cd 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_1929 a9fc288a62fe6f01771cbee91ca6ef36 251 Gene3D G3DSA:3.60.21.10 1 248 7.6E-59 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_1929 a9fc288a62fe6f01771cbee91ca6ef36 251 PIRSF PIRSF000883 1 247 5.4E-51 T 13-10-2018 IPR011152 Phosphoesterase MJ0912 trd_1929 a9fc288a62fe6f01771cbee91ca6ef36 251 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 204 4.8E-26 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 trd_1929 a9fc288a62fe6f01771cbee91ca6ef36 251 SUPERFAMILY SSF56300 1 239 3.66E-52 T 13-10-2018 trd_A0349 1d809dc640791f28a788aac1f2abc589 210 Gene3D G3DSA:1.10.3210.10 2 204 7.7E-59 T 13-10-2018 trd_A0349 1d809dc640791f28a788aac1f2abc589 210 Pfam PF13023 HD domain 14 170 8.1E-36 T 13-10-2018 IPR006674 HD domain trd_A0349 1d809dc640791f28a788aac1f2abc589 210 SUPERFAMILY SSF109604 6 169 6.85E-38 T 13-10-2018 trd_A0349 1d809dc640791f28a788aac1f2abc589 210 SMART SM00471 32 169 1.6E-6 T 13-10-2018 IPR003607 HD/PDEase domain trd_A0506 d761ced977f1ef3b02f06c26ea779736 699 SUPERFAMILY SSF53300 511 679 2.41E-12 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily trd_A0506 d761ced977f1ef3b02f06c26ea779736 699 Gene3D G3DSA:3.40.50.410 509 687 3.3E-12 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily trd_A0696 51576e13513ef7168959756d7091fe28 1149 Pfam PF13086 AAA domain 788 859 2.4E-16 T 13-10-2018 trd_A0696 51576e13513ef7168959756d7091fe28 1149 Pfam PF13086 AAA domain 650 755 3.9E-12 T 13-10-2018 trd_A0696 51576e13513ef7168959756d7091fe28 1149 Gene3D G3DSA:3.40.50.300 904 1126 1.3E-45 T 13-10-2018 trd_A0696 51576e13513ef7168959756d7091fe28 1149 Pfam PF12705 PD-(D/E)XK nuclease superfamily 137 326 7.0E-11 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type trd_A0696 51576e13513ef7168959756d7091fe28 1149 SMART SM00382 666 894 6.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0696 51576e13513ef7168959756d7091fe28 1149 SUPERFAMILY SSF52540 647 1127 4.15E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0696 51576e13513ef7168959756d7091fe28 1149 Pfam PF13087 AAA domain 882 1097 1.1E-44 T 13-10-2018 trd_A0696 51576e13513ef7168959756d7091fe28 1149 Gene3D G3DSA:3.40.50.300 592 903 5.0E-46 T 13-10-2018 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR01959 SuhB family inositol monophosphatase signature 105 124 5.6E-7 T 13-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 5.6E-7 T 13-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 Gene3D G3DSA:3.40.190.80 142 262 1.4E-41 T 13-10-2018 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 Gene3D G3DSA:3.30.540.10 2 141 3.5E-48 T 13-10-2018 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 Pfam PF00459 Inositol monophosphatase family 5 254 2.2E-69 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 82 95 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 7.5E-52 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 7.5E-52 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 7.5E-52 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 7.5E-52 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 7.5E-52 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 131 154 7.5E-52 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 trd_0178 fa58a3b267c11244adbfecc2b5148546 265 SUPERFAMILY SSF56655 5 258 1.7E-85 T 13-10-2018 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 Gene3D G3DSA:3.40.462.20 222 423 3.4E-100 T 13-10-2018 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 SUPERFAMILY SSF56176 29 222 1.64E-52 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 Pfam PF08031 Berberine and berberine like 419 462 1.8E-12 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 Pfam PF01565 FAD binding domain 56 190 7.5E-31 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 Gene3D G3DSA:3.30.465.10 124 450 3.4E-100 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 56 89 - T 13-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 trd_A0520 9d8528ef5dcf8c7686e65d2e23cd619d 464 Gene3D G3DSA:3.30.43.10 31 109 5.3E-30 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 trd_0560 8657f44457a9163fe162fd3b4aaf5dae 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 1.6E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_0560 8657f44457a9163fe162fd3b4aaf5dae 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 1.6E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_0560 8657f44457a9163fe162fd3b4aaf5dae 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.6E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_0560 8657f44457a9163fe162fd3b4aaf5dae 278 Gene3D G3DSA:3.40.50.1820 7 270 4.3E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0560 8657f44457a9163fe162fd3b4aaf5dae 278 SUPERFAMILY SSF53474 8 269 6.18E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0560 8657f44457a9163fe162fd3b4aaf5dae 278 Pfam PF12697 Alpha/beta hydrolase family 30 262 1.9E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_0533 8e1910ca9dcdb0e1007e0da2de3b18f0 98 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 2 98 9.8E-33 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0533 8e1910ca9dcdb0e1007e0da2de3b18f0 98 Pfam PF00547 Urease, gamma subunit 2 97 3.6E-35 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0533 8e1910ca9dcdb0e1007e0da2de3b18f0 98 SUPERFAMILY SSF54111 2 98 2.09E-32 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0533 8e1910ca9dcdb0e1007e0da2de3b18f0 98 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 7 97 1.0E-25 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0533 8e1910ca9dcdb0e1007e0da2de3b18f0 98 Gene3D G3DSA:3.30.280.10 1 98 1.5E-36 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_1312 a8f4e7ba6687c8fc018327c7d9fac467 347 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 48 331 2.1E-63 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_1312 a8f4e7ba6687c8fc018327c7d9fac467 347 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 77 95 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 trd_1312 a8f4e7ba6687c8fc018327c7d9fac467 347 Gene3D G3DSA:3.40.50.1100 82 202 2.6E-94 T 13-10-2018 trd_1312 a8f4e7ba6687c8fc018327c7d9fac467 347 SUPERFAMILY SSF53686 45 339 5.24E-81 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_1312 a8f4e7ba6687c8fc018327c7d9fac467 347 Gene3D G3DSA:3.40.50.1100 50 331 2.6E-94 T 13-10-2018 trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 SUPERFAMILY SSF53474 62 412 2.32E-104 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 Gene3D G3DSA:1.10.1740.110 226 331 3.4E-145 T 13-10-2018 trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 PIRSF PIRSF000443 46 414 2.2E-140 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 Pfam PF00561 alpha/beta hydrolase fold 92 399 6.7E-43 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 52 412 32.789 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 63 411 1.1E-137 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 trd_0368 e8a2b4107f3a203f5ea5f74dd09bca02 414 Gene3D G3DSA:3.40.50.1820 68 406 3.4E-145 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1322 90fb9a829b21e647c8792355f38f9dac 174 SMART SM00347 38 135 5.5E-22 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1322 90fb9a829b21e647c8792355f38f9dac 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 7.6E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1322 90fb9a829b21e647c8792355f38f9dac 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 7.6E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1322 90fb9a829b21e647c8792355f38f9dac 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 7.6E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1322 90fb9a829b21e647c8792355f38f9dac 174 SUPERFAMILY SSF46785 17 147 1.16E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1322 90fb9a829b21e647c8792355f38f9dac 174 Gene3D G3DSA:1.10.10.10 11 153 4.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1322 90fb9a829b21e647c8792355f38f9dac 174 Pfam PF12802 MarR family 43 101 2.5E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1445 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 SUPERFAMILY SSF102198 2 218 8.5E-47 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_1445 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 Pfam PF04199 Putative cyclase 3 161 1.2E-21 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_1445 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 Gene3D G3DSA:3.50.30.50 1 218 2.3E-48 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0599 9b17457b1b6a9aedfe162ba7820eb7f5 268 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0599 9b17457b1b6a9aedfe162ba7820eb7f5 268 SUPERFAMILY SSF52540 11 235 1.06E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0599 9b17457b1b6a9aedfe162ba7820eb7f5 268 Pfam PF00005 ABC transporter 32 169 1.1E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0599 9b17457b1b6a9aedfe162ba7820eb7f5 268 Gene3D G3DSA:3.40.50.300 10 244 4.7E-60 T 13-10-2018 trd_0599 9b17457b1b6a9aedfe162ba7820eb7f5 268 SMART SM00382 39 220 6.9E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.6E-48 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 SUPERFAMILY SSF54686 1 137 2.49E-55 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.929 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 8.8E-59 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 Gene3D G3DSA:3.90.1170.10 1 146 9.3E-56 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 88 117 4.3E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 24 36 4.3E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 58 87 4.3E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0977 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 42 53 4.3E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0983 8db69e98fbe284a3186b94f6254e7dc2 212 SUPERFAMILY SSF52166 1 206 1.22E-72 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 trd_0983 8db69e98fbe284a3186b94f6254e7dc2 212 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 1.5E-59 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 trd_0983 8db69e98fbe284a3186b94f6254e7dc2 212 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 204 9.2E-74 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0983 8db69e98fbe284a3186b94f6254e7dc2 212 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 208 33.298 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0983 8db69e98fbe284a3186b94f6254e7dc2 212 Gene3D G3DSA:3.40.1370.10 1 211 1.1E-72 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 trd_A0701 15383c9ee376b8a1e20699a8f1fe5bcc 297 Gene3D G3DSA:1.10.3720.10 80 287 1.3E-29 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0701 15383c9ee376b8a1e20699a8f1fe5bcc 297 SUPERFAMILY SSF161098 85 272 1.83E-32 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0701 15383c9ee376b8a1e20699a8f1fe5bcc 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 291 1.4E-35 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0701 15383c9ee376b8a1e20699a8f1fe5bcc 297 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 19 66 3.9E-9 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain trd_0158 28f811c012f1dcf3b504fd2f11d1aad3 127 Gene3D G3DSA:3.40.1260.10 1 127 6.1E-37 T 13-10-2018 IPR027396 DsrEFH-like trd_0158 28f811c012f1dcf3b504fd2f11d1aad3 127 Pfam PF02635 DsrE/DsrF-like family 6 127 1.3E-16 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein trd_0158 28f811c012f1dcf3b504fd2f11d1aad3 127 SUPERFAMILY SSF75169 6 127 1.77E-21 T 13-10-2018 IPR027396 DsrEFH-like trd_A0861 cb6978ccfb3092de373a6ee65e8541ef 326 Pfam PF13641 Glycosyltransferase like family 2 28 269 1.3E-20 T 13-10-2018 trd_A0861 cb6978ccfb3092de373a6ee65e8541ef 326 Gene3D G3DSA:3.90.550.10 21 270 4.9E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0861 cb6978ccfb3092de373a6ee65e8541ef 326 SUPERFAMILY SSF53448 29 313 9.14E-50 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1662 599abee3f65461810cb3fe509fed3b32 320 Gene3D G3DSA:3.40.1010.20 104 210 2.4E-85 T 13-10-2018 trd_1662 599abee3f65461810cb3fe509fed3b32 320 Pfam PF02401 LytB protein 10 296 1.7E-80 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 trd_1662 599abee3f65461810cb3fe509fed3b32 320 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 8 300 31.611 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 trd_1662 599abee3f65461810cb3fe509fed3b32 320 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 9 298 1.2E-80 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 trd_1662 599abee3f65461810cb3fe509fed3b32 320 Gene3D G3DSA:3.40.1010.20 10 296 2.4E-85 T 13-10-2018 trd_1662 599abee3f65461810cb3fe509fed3b32 320 Gene3D G3DSA:3.40.50.11270 19 103 2.4E-85 T 13-10-2018 trd_1234 3aeec148e957af429175edb2c174dcbe 296 SUPERFAMILY SSF81336 79 261 3.79E-33 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 PRINTS PR00123 ATP synthase A subunit signature 248 263 1.3E-5 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 PRINTS PR00123 ATP synthase A subunit signature 87 103 1.3E-5 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 ProSitePatterns PS00449 ATP synthase a subunit signature. 199 208 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 268 15.339 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 Pfam PF00119 ATP synthase A chain 30 261 2.0E-58 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 Gene3D G3DSA:1.20.120.220 79 269 1.2E-44 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1234 3aeec148e957af429175edb2c174dcbe 296 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 23 262 2.2E-42 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1389 d2e62f6de408e664711917962d61358a 71 SUPERFAMILY SSF55331 1 61 2.36E-15 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily trd_1389 d2e62f6de408e664711917962d61358a 71 Pfam PF01361 Tautomerase enzyme 4 54 6.4E-11 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 trd_1389 d2e62f6de408e664711917962d61358a 71 Gene3D G3DSA:3.30.429.10 1 70 1.4E-19 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 SMART SM00283 353 642 3.1E-59 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 399 580 1.6E-39 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 SUPERFAMILY SSF58104 591 657 1.54E-5 T 13-10-2018 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 181 5.7E-19 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 SMART SM00304 223 282 1.2E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 Gene3D G3DSA:1.10.287.950 341 614 4.8E-61 T 13-10-2018 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 Pfam PF00672 HAMP domain 229 279 8.3E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 SUPERFAMILY SSF58104 359 612 2.79E-59 T 13-10-2018 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 Gene3D G3DSA:1.10.287.130 222 319 1.2E-5 T 13-10-2018 trd_A0214 beab00f5d779f7ab4a2487998d98f674 696 SUPERFAMILY SSF58104 255 363 1.36E-6 T 13-10-2018 trd_0214 71e072d3b363498016efaf57963c4570 463 ProSitePatterns PS00482 Dihydroorotase signature 1. 56 64 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0214 71e072d3b363498016efaf57963c4570 463 SUPERFAMILY SSF51338 1 439 6.43E-29 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0214 71e072d3b363498016efaf57963c4570 463 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 16 436 4.1E-125 T 13-10-2018 trd_0214 71e072d3b363498016efaf57963c4570 463 Pfam PF01979 Amidohydrolase family 49 432 3.1E-31 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_0214 71e072d3b363498016efaf57963c4570 463 Gene3D G3DSA:3.20.20.140 54 380 1.6E-140 T 13-10-2018 trd_0214 71e072d3b363498016efaf57963c4570 463 Gene3D G3DSA:2.30.40.10 6 432 1.6E-140 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0214 71e072d3b363498016efaf57963c4570 463 SUPERFAMILY SSF51556 53 379 4.2E-97 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0214 71e072d3b363498016efaf57963c4570 463 ProSitePatterns PS00483 Dihydroorotase signature 2. 316 327 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0214 71e072d3b363498016efaf57963c4570 463 Hamap MF_00220_B Dihydroorotase [pyrC]. 1 436 43.561 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 9.7E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 52 60 1.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.30.70.2570 483 557 4.4E-34 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Hamap MF_00071 Elongation factor 4 [lepA]. 1 601 286.703 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF54980 402 497 4.17E-23 T 13-10-2018 IPR035647 EF-G domain III/V-like trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.30.70.3380 371 482 5.2E-38 T 13-10-2018 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.40.50.300 3 188 1.0E-73 T 13-10-2018 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.30.70.870 289 370 1.2E-36 T 13-10-2018 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 SMART SM00838 401 489 0.0024 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF03144 Elongation factor Tu domain 2 208 278 1.7E-10 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 178 8.4E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF52540 1 217 5.01E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF06421 GTP-binding protein LepA C-terminus 491 597 7.7E-50 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:2.40.30.10 189 288 3.1E-33 T 13-10-2018 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 7.4E-286 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF54980 295 373 1.08E-18 T 13-10-2018 IPR035647 EF-G domain III/V-like trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF00679 Elongation factor G C-terminus 402 488 1.1E-20 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like trd_0851 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF50447 185 291 7.78E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_1402 84d40922768b0be1d5c2a112b21eb79f 312 Pfam PF04909 Amidohydrolase 3 298 1.6E-28 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_1402 84d40922768b0be1d5c2a112b21eb79f 312 Gene3D G3DSA:3.20.20.140 1 309 4.0E-83 T 13-10-2018 trd_1402 84d40922768b0be1d5c2a112b21eb79f 312 SUPERFAMILY SSF51556 1 299 2.19E-71 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0832 370e1db1880bb00748e738bfa2297aa8 636 SUPERFAMILY SSF56719 397 630 4.97E-89 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 SUPERFAMILY SSF54211 224 394 9.29E-61 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 271 284 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 423 437 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 568 584 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 37 52 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 115 129 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 507 524 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 527 539 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 72 85 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 489 505 4.7E-72 T 13-10-2018 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 564 625 2.2E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF01751 Toprim domain 422 522 2.1E-17 T 13-10-2018 IPR006171 TOPRIM domain trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Gene3D G3DSA:3.30.565.10 5 223 9.4E-91 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_0832 370e1db1880bb00748e738bfa2297aa8 636 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 636 1.4E-301 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 636 90.817 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 SMART SM00433 37 629 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF00204 DNA gyrase B 224 393 1.8E-63 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 153 8.7E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Gene3D G3DSA:3.30.230.10 224 395 1.6E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_0832 370e1db1880bb00748e738bfa2297aa8 636 SUPERFAMILY SSF55874 7 221 1.44E-74 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_0832 370e1db1880bb00748e738bfa2297aa8 636 SMART SM00387 33 179 3.6E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_0832 370e1db1880bb00748e738bfa2297aa8 636 Gene3D G3DSA:3.40.50.670 401 636 4.4E-109 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 ProSitePatterns PS00177 DNA topoisomerase II signature. 425 433 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 315 331 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 8 18 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 199 212 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 363 377 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 223 245 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 473 482 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 377 397 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 605 621 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 184 199 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_0832 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 589 601 3.5E-68 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 trd_1387 7ec749f91db9a987e29a17527c14c4a3 266 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 107 255 6.0E-11 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 trd_1387 7ec749f91db9a987e29a17527c14c4a3 266 SUPERFAMILY SSF56529 10 266 1.31E-72 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_1387 7ec749f91db9a987e29a17527c14c4a3 266 Gene3D G3DSA:3.90.850.10 5 266 1.7E-76 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_1345 705292eb5cba0ca24043a8b5455af9f1 311 SUPERFAMILY SSF51679 7 303 3.01E-69 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1345 705292eb5cba0ca24043a8b5455af9f1 311 Gene3D G3DSA:3.20.20.30 1 307 3.7E-73 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1345 705292eb5cba0ca24043a8b5455af9f1 311 Pfam PF00296 Luciferase-like monooxygenase 12 248 3.1E-55 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_1345 705292eb5cba0ca24043a8b5455af9f1 311 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 35 287 4.9E-50 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted trd_0461 d6e92314fc45c7e71c6b71cb72d01f0e 101 Gene3D G3DSA:3.30.1310.10 1 100 3.8E-32 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily trd_0461 d6e92314fc45c7e71c6b71cb72d01f0e 101 Pfam PF02575 YbaB/EbfC DNA-binding family 5 94 4.2E-30 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family trd_0461 d6e92314fc45c7e71c6b71cb72d01f0e 101 PIRSF PIRSF004555 1 101 3.0E-30 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family trd_0461 d6e92314fc45c7e71c6b71cb72d01f0e 101 SUPERFAMILY SSF82607 5 97 8.89E-28 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily trd_0461 d6e92314fc45c7e71c6b71cb72d01f0e 101 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 93 18.323 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family trd_0461 d6e92314fc45c7e71c6b71cb72d01f0e 101 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 5 87 1.8E-24 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family trd_1667 a91412a97b57a89e64254f952679a4da 364 SUPERFAMILY SSF55874 207 334 2.62E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1667 a91412a97b57a89e64254f952679a4da 364 Gene3D G3DSA:3.30.565.10 202 340 2.0E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1667 a91412a97b57a89e64254f952679a4da 364 Pfam PF07730 Histidine kinase 134 204 4.5E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 trd_1667 a91412a97b57a89e64254f952679a4da 364 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 246 337 6.7E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1667 a91412a97b57a89e64254f952679a4da 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 292 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1667 a91412a97b57a89e64254f952679a4da 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 316 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1667 a91412a97b57a89e64254f952679a4da 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 335 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1667 a91412a97b57a89e64254f952679a4da 364 PIRSF PIRSF037434 95 343 3.5E-49 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS trd_1667 a91412a97b57a89e64254f952679a4da 364 PIRSF PIRSF037434 33 109 36.0 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS trd_1667 a91412a97b57a89e64254f952679a4da 364 SMART SM00387 242 338 3.4E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_A0051 47eb2b7aebb1604ee9f5298bd12280e3 79 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 68 16.565 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 trd_A0051 47eb2b7aebb1604ee9f5298bd12280e3 79 Pfam PF02599 Global regulator protein family 1 50 9.7E-22 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 trd_A0051 47eb2b7aebb1604ee9f5298bd12280e3 79 Gene3D G3DSA:3.30.70.1680 1 63 7.6E-23 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 trd_A0051 47eb2b7aebb1604ee9f5298bd12280e3 79 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 47 1.0E-9 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 trd_A0051 47eb2b7aebb1604ee9f5298bd12280e3 79 SUPERFAMILY SSF117130 1 52 2.48E-16 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 trd_1587 842b7df77ae354658cb441f6b29851b6 451 SUPERFAMILY SSF52743 131 447 2.75E-56 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 trd_1587 842b7df77ae354658cb441f6b29851b6 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 195 208 5.2E-10 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_1587 842b7df77ae354658cb441f6b29851b6 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 150 169 5.2E-10 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_1587 842b7df77ae354658cb441f6b29851b6 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 385 401 5.2E-10 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_1587 842b7df77ae354658cb441f6b29851b6 451 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 199 209 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site trd_1587 842b7df77ae354658cb441f6b29851b6 451 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 386 396 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site trd_1587 842b7df77ae354658cb441f6b29851b6 451 Pfam PF00082 Subtilase family 154 423 1.2E-26 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 trd_1587 842b7df77ae354658cb441f6b29851b6 451 Gene3D G3DSA:3.40.50.200 114 447 5.9E-67 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 trd_0899 6df35349fd283cac0dc902d3c4079b48 299 Pfam PF02219 Methylenetetrahydrofolate reductase 37 199 1.9E-12 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 trd_0899 6df35349fd283cac0dc902d3c4079b48 299 SUPERFAMILY SSF51730 29 284 8.63E-36 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like trd_0899 6df35349fd283cac0dc902d3c4079b48 299 Gene3D G3DSA:3.20.20.220 30 288 1.6E-28 T 13-10-2018 trd_0110 d6ef542c708fdc4a08828ac73cc49b3e 352 Gene3D G3DSA:3.20.20.70 77 333 4.2E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0110 d6ef542c708fdc4a08828ac73cc49b3e 352 Pfam PF00793 DAHP synthetase I family 87 323 4.3E-78 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 trd_0110 d6ef542c708fdc4a08828ac73cc49b3e 352 Gene3D G3DSA:3.30.70.1140 1 76 5.5E-26 T 13-10-2018 trd_0110 d6ef542c708fdc4a08828ac73cc49b3e 352 SUPERFAMILY SSF51569 1 337 1.92E-117 T 13-10-2018 trd_0110 d6ef542c708fdc4a08828ac73cc49b3e 352 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 72 328 1.5E-120 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 PIRSF PIRSF000103 1 292 1.3E-77 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 5.4E-21 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 SUPERFAMILY SSF51735 1 161 4.47E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0014 ca4bec91a369758f5347e1560448f1da 294 SUPERFAMILY SSF48179 166 290 4.99E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 Gene3D G3DSA:1.10.1040.10 159 292 3.0E-35 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 160 7.9E-34 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 Gene3D G3DSA:3.40.50.720 1 158 7.8E-44 T 13-10-2018 trd_A0014 ca4bec91a369758f5347e1560448f1da 294 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 trd_0690 293d2e101fd45d856e507a67c8e427ed 215 Gene3D G3DSA:3.40.50.300 29 198 4.6E-44 T 13-10-2018 trd_0690 293d2e101fd45d856e507a67c8e427ed 215 Pfam PF01695 IstB-like ATP binding protein 61 189 1.1E-18 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 trd_0690 293d2e101fd45d856e507a67c8e427ed 215 SUPERFAMILY SSF52540 40 211 1.38E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0690 293d2e101fd45d856e507a67c8e427ed 215 SMART SM00382 69 200 1.0E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1134 086d3f511acfbd80fd1980cecea3dfff 378 SUPERFAMILY SSF53383 23 374 3.59E-34 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1134 086d3f511acfbd80fd1980cecea3dfff 378 Gene3D G3DSA:3.40.640.10 22 279 8.8E-64 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1134 086d3f511acfbd80fd1980cecea3dfff 378 Pfam PF03841 L-seryl-tRNA selenium transferase 20 272 2.5E-10 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 trd_A0295 4883427a7911ab78f63688453ee80351 473 SUPERFAMILY SSF58104 75 357 2.88E-58 T 13-10-2018 trd_A0295 4883427a7911ab78f63688453ee80351 473 Pfam PF13682 Chemoreceptor zinc-binding domain 372 438 3.5E-17 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain trd_A0295 4883427a7911ab78f63688453ee80351 473 Gene3D G3DSA:1.10.287.950 77 361 5.1E-55 T 13-10-2018 trd_A0295 4883427a7911ab78f63688453ee80351 473 SMART SM00283 95 356 5.3E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0295 4883427a7911ab78f63688453ee80351 473 Gene3D G3DSA:1.20.120.30 362 463 2.1E-7 T 13-10-2018 trd_A0295 4883427a7911ab78f63688453ee80351 473 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 139 323 1.6E-39 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_1940 53b48f493e0f74ce48a5e9ba8346069c 332 SUPERFAMILY SSF111331 21 326 2.4E-73 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily trd_1940 53b48f493e0f74ce48a5e9ba8346069c 332 Gene3D G3DSA:2.60.200.40 157 313 2.5E-45 T 13-10-2018 trd_1940 53b48f493e0f74ce48a5e9ba8346069c 332 Gene3D G3DSA:3.40.50.10330 16 156 1.5E-30 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 trd_1940 53b48f493e0f74ce48a5e9ba8346069c 332 Pfam PF00781 Diacylglycerol kinase catalytic domain 21 146 2.7E-25 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 trd_1940 53b48f493e0f74ce48a5e9ba8346069c 332 SMART SM00046 20 160 4.6E-4 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 trd_1940 53b48f493e0f74ce48a5e9ba8346069c 332 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 21 324 3.6E-49 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 PRINTS PR01035 Tetracycline resistance protein signature 323 343 4.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 PRINTS PR01035 Tetracycline resistance protein signature 122 143 4.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 PRINTS PR01035 Tetracycline resistance protein signature 357 380 4.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 PRINTS PR01035 Tetracycline resistance protein signature 95 119 4.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 PRINTS PR01035 Tetracycline resistance protein signature 33 49 4.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 PRINTS PR01035 Tetracycline resistance protein signature 152 174 4.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 Pfam PF07690 Major Facilitator Superfamily 27 253 1.0E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 Gene3D G3DSA:1.20.1250.20 21 206 2.8E-32 T 13-10-2018 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 SUPERFAMILY SSF103473 19 408 1.28E-69 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 Gene3D G3DSA:1.20.1250.20 243 423 4.8E-29 T 13-10-2018 trd_A0691 395828dc12fbb9bf4eec3b8df1fe73b2 424 Pfam PF00083 Sugar (and other) transporter 266 389 1.1E-8 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 trd_1295 8edc09ac6b5b0b7267eb0ae0639b0376 285 SUPERFAMILY SSF53335 44 226 2.56E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1295 8edc09ac6b5b0b7267eb0ae0639b0376 285 Pfam PF08241 Methyltransferase domain 82 173 1.7E-24 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 trd_1295 8edc09ac6b5b0b7267eb0ae0639b0376 285 Gene3D G3DSA:3.40.50.150 54 233 7.7E-41 T 13-10-2018 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 20 156 2.4E-40 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 113 130 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 Gene3D G3DSA:2.40.50.100 80 156 7.2E-32 T 13-10-2018 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 SUPERFAMILY SSF51230 82 156 3.01E-25 T 13-10-2018 IPR011053 Single hybrid motif trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 118 131 1.9E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 103 117 1.9E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 86 99 1.9E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_1699 533bfce141851f4f5de38fcc86f3eab3 159 Pfam PF00364 Biotin-requiring enzyme 83 156 4.8E-25 T 13-10-2018 IPR000089 Biotin/lipoyl attachment trd_1968 02c096b2cac285ceb7ed15b085fa1633 842 SUPERFAMILY SSF53955 142 322 3.37E-63 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily trd_1968 02c096b2cac285ceb7ed15b085fa1633 842 Gene3D G3DSA:1.10.3810.10 129 321 4.8E-66 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_1968 02c096b2cac285ceb7ed15b085fa1633 842 SUPERFAMILY SSF56601 281 740 5.23E-104 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_1968 02c096b2cac285ceb7ed15b085fa1633 842 Gene3D G3DSA:3.40.710.10 322 733 1.9E-111 T 13-10-2018 trd_1968 02c096b2cac285ceb7ed15b085fa1633 842 Pfam PF00912 Transglycosylase 144 299 2.2E-54 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_1968 02c096b2cac285ceb7ed15b085fa1633 842 Pfam PF00905 Penicillin binding protein transpeptidase domain 388 657 4.9E-21 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 trd_1146 b7ef580d56642dd9775e40f4a5495485 261 SUPERFAMILY SSF100950 4 244 2.93E-69 T 13-10-2018 IPR037171 NagB/RpiA transferase-like trd_1146 b7ef580d56642dd9775e40f4a5495485 261 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 9 244 1.4E-61 T 13-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 trd_1146 b7ef580d56642dd9775e40f4a5495485 261 Gene3D G3DSA:3.40.50.1360 1 246 6.2E-76 T 13-10-2018 trd_1146 b7ef580d56642dd9775e40f4a5495485 261 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 10 234 1.3E-66 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 98 106 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 Gene3D G3DSA:3.90.550.10 1 267 4.0E-86 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 332 359 0.0013 T 13-10-2018 IPR001451 Hexapeptide repeat trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 379 401 1.7E-4 T 13-10-2018 IPR001451 Hexapeptide repeat trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 Pfam PF00483 Nucleotidyl transferase 7 258 6.1E-61 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 387 44.676 T 13-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 Gene3D G3DSA:2.160.10.10 268 386 1.2E-30 T 13-10-2018 trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 SUPERFAMILY SSF51161 229 407 8.64E-25 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 358 8.2E-136 T 13-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 trd_1259 bfe386b0939b239d45cff0f0b763ba7f 428 SUPERFAMILY SSF53448 4 261 1.15E-83 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0841 a66d17faa868e43afecfceac74e6f469 88 TIGRFAM TIGR03967 mycofact_MftB: putative mycofactocin binding protein MftB 4 85 2.4E-26 T 13-10-2018 IPR023850 Putative mycofactocin binding protein MftB trd_A0772 cbd90d482a2f02b7cfe104f4d39688ef 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 325 5.7E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Pfam PF00702 haloacid dehalogenase-like hydrolase 309 612 2.3E-26 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Gene3D G3DSA:3.40.1110.10 322 503 3.7E-235 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Pfam PF00690 Cation transporter/ATPase, N-terminus 18 70 5.3E-15 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 SUPERFAMILY SSF81665 17 871 5.36E-99 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 314 320 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 411 543 9.0E-21 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 572 677 7.3E-32 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 84 331 3.3E-40 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 SUPERFAMILY SSF81660 319 500 6.54E-34 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 SUPERFAMILY SSF56784 310 705 1.03E-58 T 13-10-2018 IPR036412 HAD-like superfamily trd_0583 f4512268e58cd99827d0b37556def7ea 873 SUPERFAMILY SSF81653 114 211 2.35E-28 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Pfam PF00689 Cation transporting ATPase, C-terminus 684 865 9.6E-35 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 452 470 1.2E-16 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 598 614 1.2E-16 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 630 655 1.2E-16 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Gene3D G3DSA:1.20.1110.10 55 864 3.7E-235 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Pfam PF00122 E1-E2 ATPase 112 291 3.5E-50 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 Gene3D G3DSA:3.40.50.1000 309 643 3.7E-235 T 13-10-2018 IPR023214 HAD superfamily trd_0583 f4512268e58cd99827d0b37556def7ea 873 Gene3D G3DSA:2.70.150.10 18 215 3.7E-235 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 SMART SM00831 7 77 1.6E-10 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 312 326 2.6E-37 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 162 176 2.6E-37 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 496 507 2.6E-37 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 518 528 2.6E-37 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 622 634 2.6E-37 T 13-10-2018 trd_0583 f4512268e58cd99827d0b37556def7ea 873 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 598 617 2.6E-37 T 13-10-2018 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 17 127 4.1E-28 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Gene3D G3DSA:3.30.365.10 456 615 8.6E-108 T 13-10-2018 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Gene3D G3DSA:3.30.365.10 128 369 2.7E-127 T 13-10-2018 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Gene3D G3DSA:3.30.365.10 380 751 8.6E-108 T 13-10-2018 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 SUPERFAMILY SSF54665 2 146 7.07E-43 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Gene3D G3DSA:3.30.365.10 16 293 2.7E-127 T 13-10-2018 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 173 699 6.6E-159 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 SMART SM01008 17 127 5.5E-50 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 SUPERFAMILY SSF56003 119 758 3.14E-180 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_A0069 8a92d06392373b55a5c843f7bb7b3bfc 763 Gene3D G3DSA:3.90.1170.50 32 127 2.7E-127 T 13-10-2018 trd_0951 9e083233389a904506518e04a597f577 305 Pfam PF03576 Peptidase family S58 7 303 9.3E-47 T 13-10-2018 IPR005321 Peptidase S58, DmpA trd_0951 9e083233389a904506518e04a597f577 305 Gene3D G3DSA:3.60.70.12 2 303 3.6E-88 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 trd_0951 9e083233389a904506518e04a597f577 305 SUPERFAMILY SSF56266 7 291 4.71E-49 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 trd_1767 0b122ddec9f7e36e6c69529e5dbb5219 186 SUPERFAMILY SSF52218 7 178 4.86E-45 T 13-10-2018 IPR029039 Flavoprotein-like superfamily trd_1767 0b122ddec9f7e36e6c69529e5dbb5219 186 Gene3D G3DSA:3.40.50.360 2 186 8.4E-54 T 13-10-2018 IPR029039 Flavoprotein-like superfamily trd_1767 0b122ddec9f7e36e6c69529e5dbb5219 186 Pfam PF03358 NADPH-dependent FMN reductase 7 152 1.2E-38 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 trd_A0367 1c36ded41f65ca846a893b82c3cbea1e 114 Gene3D G3DSA:2.60.120.10 5 112 9.4E-28 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_A0367 1c36ded41f65ca846a893b82c3cbea1e 114 SUPERFAMILY SSF51182 11 108 9.96E-23 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_A0367 1c36ded41f65ca846a893b82c3cbea1e 114 Pfam PF07883 Cupin domain 39 104 1.9E-15 T 13-10-2018 IPR013096 Cupin 2, conserved barrel trd_A0531 e909ea4c164a82bd6e5f37bd4ff43d15 89 Pfam PF02417 Chromate transporter 2 87 4.8E-11 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 trd_A0039 d1ec428af3dd66e40c234051a37b7cae 333 Pfam PF00448 SRP54-type protein, GTPase domain 133 309 9.8E-17 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_A0039 d1ec428af3dd66e40c234051a37b7cae 333 SMART SM00962 131 318 7.1E-12 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 trd_A0039 d1ec428af3dd66e40c234051a37b7cae 333 SUPERFAMILY SSF52540 131 304 6.47E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0039 d1ec428af3dd66e40c234051a37b7cae 333 Gene3D G3DSA:3.40.50.300 130 305 2.0E-29 T 13-10-2018 trd_A0039 d1ec428af3dd66e40c234051a37b7cae 333 SMART SM00382 130 293 5.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1034 e640307a011be2c0f58515f9033d6f71 470 Pfam PF13481 AAA domain 73 221 6.6E-18 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 Gene3D G3DSA:3.30.230.10 305 454 6.4E-16 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 247 273 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 321 344 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 81 109 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 123 140 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 173 197 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 212 240 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 14 38 1.6E-85 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 SUPERFAMILY SSF54211 254 452 1.14E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1034 e640307a011be2c0f58515f9033d6f71 470 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 428 1.3E-9 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 SUPERFAMILY SSF52540 69 288 7.62E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1034 e640307a011be2c0f58515f9033d6f71 470 SMART SM00382 89 243 3.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1034 e640307a011be2c0f58515f9033d6f71 470 Gene3D G3DSA:3.40.50.300 64 278 1.8E-42 T 13-10-2018 trd_1034 e640307a011be2c0f58515f9033d6f71 470 Hamap MF_01498 DNA repair protein RadA [radA]. 25 454 43.297 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 trd_1034 e640307a011be2c0f58515f9033d6f71 470 TIGRFAM TIGR00416 sms: DNA repair protein RadA 7 450 9.9E-170 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 trd_A0162 96195ada5bda9b732c78b95e51655c89 346 Pfam PF05544 Proline racemase 16 344 2.1E-64 T 13-10-2018 IPR008794 Proline racemase family trd_A0162 96195ada5bda9b732c78b95e51655c89 346 SUPERFAMILY SSF54506 13 344 5.63E-60 T 13-10-2018 trd_A0162 96195ada5bda9b732c78b95e51655c89 346 Gene3D G3DSA:3.10.310.10 149 323 7.6E-89 T 13-10-2018 trd_A0162 96195ada5bda9b732c78b95e51655c89 346 Gene3D G3DSA:3.10.310.10 9 346 7.6E-89 T 13-10-2018 trd_0412 89763033cbb836dd9c24c7468c438327 312 Pfam PF00296 Luciferase-like monooxygenase 11 254 7.5E-50 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_0412 89763033cbb836dd9c24c7468c438327 312 Gene3D G3DSA:3.20.20.30 3 311 7.6E-77 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_0412 89763033cbb836dd9c24c7468c438327 312 SUPERFAMILY SSF51679 3 310 7.07E-70 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 Gene3D G3DSA:1.10.287.130 176 287 4.0E-7 T 13-10-2018 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 SUPERFAMILY SSF58104 207 315 2.09E-7 T 13-10-2018 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 Gene3D G3DSA:1.10.287.950 291 582 1.1E-62 T 13-10-2018 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 SMART SM00283 307 582 6.9E-64 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 Pfam PF00672 HAMP domain 186 231 3.7E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 SUPERFAMILY SSF58104 313 578 5.23E-62 T 13-10-2018 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 331 360 9.6E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 432 9.6E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 9.6E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 66 91 9.6E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 trd_1040 2a85abfa3e2db92de9a9d36b28b8aac3 663 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 535 3.3E-42 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_0451 04bb05f39184fc757d6d0de30bc49bae 271 Pfam PF04250 Protein of unknown function (DUF429) 5 251 2.5E-11 T 13-10-2018 IPR007362 Protein of unknown function DUF429 trd_1163 d0276a23aa1d70ac35c594d0b59841c8 513 Gene3D G3DSA:3.50.50.60 1 95 2.3E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1163 d0276a23aa1d70ac35c594d0b59841c8 513 Gene3D G3DSA:3.50.50.60 193 320 9.2E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1163 d0276a23aa1d70ac35c594d0b59841c8 513 Pfam PF01593 Flavin containing amine oxidoreductase 12 482 4.1E-35 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 trd_1163 d0276a23aa1d70ac35c594d0b59841c8 513 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 494 6.0E-154 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 trd_1163 d0276a23aa1d70ac35c594d0b59841c8 513 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 460 480 - T 13-10-2018 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site trd_1163 d0276a23aa1d70ac35c594d0b59841c8 513 SUPERFAMILY SSF51905 1 488 1.94E-68 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 PIRSF PIRSF002181 10 153 1.7E-49 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 26 154 27.363 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 ProSitePatterns PS00783 Ribosomal protein L13 signature. 116 138 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 Gene3D G3DSA:3.90.1180.10 12 153 3.5E-60 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 SUPERFAMILY SSF52161 13 150 3.53E-59 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 Pfam PF00572 Ribosomal protein L13 25 149 9.9E-56 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 trd_0954 9053aeac6e8fd018fc4429e5f91efc15 155 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 15 151 8.2E-63 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1828 c6f112b0686e2b62e110f1cbdfb65cc4 284 ProSitePatterns PS00211 ABC transporters family signature. 176 190 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1828 c6f112b0686e2b62e110f1cbdfb65cc4 284 SMART SM00382 55 251 7.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1828 c6f112b0686e2b62e110f1cbdfb65cc4 284 SUPERFAMILY SSF52540 31 271 4.84E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1828 c6f112b0686e2b62e110f1cbdfb65cc4 284 Gene3D G3DSA:3.40.50.300 30 282 1.5E-66 T 13-10-2018 trd_1828 c6f112b0686e2b62e110f1cbdfb65cc4 284 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 31 284 5.6E-111 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 trd_1828 c6f112b0686e2b62e110f1cbdfb65cc4 284 Pfam PF00005 ABC transporter 46 204 3.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 SMART SM00448 6 119 1.6E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 SUPERFAMILY SSF46894 144 212 1.39E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 Pfam PF00072 Response regulator receiver domain 8 119 1.7E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 SMART SM00421 149 206 2.3E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 SUPERFAMILY SSF52172 5 138 4.13E-31 T 13-10-2018 IPR011006 CheY-like superfamily trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 8.2E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.0E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.0E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.0E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_A0569 b1e2c978a94378ae74cbdea078a780f7 213 Gene3D G3DSA:3.40.50.12740 6 212 3.4E-63 T 13-10-2018 trd_0121 8321bbeab77174227551af9c9a89a2df 378 SUPERFAMILY SSF50022 11 150 1.7E-48 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 93 113 4.6E-28 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 134 160 4.6E-28 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 49 64 4.6E-28 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 178 200 4.6E-28 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 19 44 4.6E-28 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 70 90 4.6E-28 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 Gene3D G3DSA:3.90.380.10 232 377 1.7E-39 T 13-10-2018 trd_0121 8321bbeab77174227551af9c9a89a2df 378 Gene3D G3DSA:3.90.380.10 156 231 3.9E-16 T 13-10-2018 trd_0121 8321bbeab77174227551af9c9a89a2df 378 SUPERFAMILY SSF55961 171 371 4.32E-40 T 13-10-2018 trd_0121 8321bbeab77174227551af9c9a89a2df 378 Gene3D G3DSA:2.102.10.10 32 155 1.5E-40 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 Pfam PF00355 Rieske [2Fe-2S] domain 35 124 2.2E-20 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 trd_0121 8321bbeab77174227551af9c9a89a2df 378 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 180 368 1.2E-44 T 13-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 trd_1047 5c2d9a89cc4977cf539158a12fcd826b 219 SUPERFAMILY SSF53098 23 212 3.03E-57 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_1047 5c2d9a89cc4977cf539158a12fcd826b 219 Gene3D G3DSA:3.30.420.10 15 219 7.9E-68 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_1047 5c2d9a89cc4977cf539158a12fcd826b 219 Hamap MF_00052_B Ribonuclease HII [rnhB]. 33 213 32.717 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 trd_1047 5c2d9a89cc4977cf539158a12fcd826b 219 Pfam PF01351 Ribonuclease HII 35 211 8.8E-34 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain trd_0581 dfdf4af68a6f46c9351c7975edb6be97 273 Gene3D G3DSA:3.50.30.50 2 270 2.2E-40 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0581 dfdf4af68a6f46c9351c7975edb6be97 273 Pfam PF04199 Putative cyclase 12 181 1.2E-31 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0581 dfdf4af68a6f46c9351c7975edb6be97 273 SUPERFAMILY SSF102198 8 268 2.62E-42 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_1783 5a7f0feea6d67100284eaeced02cace9 409 Gene3D G3DSA:1.10.645.20 23 409 5.2E-163 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1783 5a7f0feea6d67100284eaeced02cace9 409 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 12 409 48.318 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1783 5a7f0feea6d67100284eaeced02cace9 409 SUPERFAMILY SSF56762 34 409 8.5E-128 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1783 5a7f0feea6d67100284eaeced02cace9 409 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 24 409 5.6E-164 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1783 5a7f0feea6d67100284eaeced02cace9 409 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 138 409 1.0E-112 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0359 a8f7822f99c5c02e1211c783f7dbc8d6 216 Gene3D G3DSA:3.90.550.10 4 208 2.8E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0359 a8f7822f99c5c02e1211c783f7dbc8d6 216 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 197 24.709 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 trd_0359 a8f7822f99c5c02e1211c783f7dbc8d6 216 Pfam PF12804 MobA-like NTP transferase domain 6 153 1.0E-37 T 13-10-2018 IPR025877 MobA-like NTP transferase trd_0359 a8f7822f99c5c02e1211c783f7dbc8d6 216 SUPERFAMILY SSF53448 2 194 4.51E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SUPERFAMILY SSF50447 291 422 2.99E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SUPERFAMILY SSF54980 421 498 6.83E-20 T 13-10-2018 IPR035647 EF-G domain III/V-like trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Pfam PF14492 Elongation Factor G, domain II 423 494 1.7E-28 T 13-10-2018 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Pfam PF03144 Elongation factor Tu domain 2 343 410 1.1E-8 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Gene3D G3DSA:3.30.70.240 623 694 2.0E-86 T 13-10-2018 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Gene3D G3DSA:3.40.50.300 29 312 4.5E-76 T 13-10-2018 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 37 180 1.2E-15 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Pfam PF00009 Elongation factor Tu GTP binding domain 36 304 2.2E-40 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 TIGRFAM TIGR00484 EF-G: translation elongation factor G 33 711 1.1E-206 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Pfam PF00679 Elongation factor G C-terminus 619 705 4.2E-30 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SUPERFAMILY SSF54211 501 618 7.33E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Pfam PF03764 Elongation factor G, domain IV 498 617 1.8E-45 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SUPERFAMILY SSF52540 32 304 1.16E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SMART SM00889 499 617 1.9E-69 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Gene3D G3DSA:2.40.30.10 313 424 2.6E-34 T 13-10-2018 trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SUPERFAMILY SSF54980 622 713 5.76E-29 T 13-10-2018 IPR035647 EF-G domain III/V-like trd_1064 5b8c6f108e521f61828adbaf0526013e 720 SMART SM00838 619 707 1.4E-38 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Gene3D G3DSA:3.30.230.10 503 707 2.0E-86 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1064 5b8c6f108e521f61828adbaf0526013e 720 Gene3D G3DSA:3.30.70.870 425 502 8.0E-25 T 13-10-2018 trd_A0246 100363286ff151dc29acf648a6c91a47 141 Gene3D G3DSA:2.60.120.10 9 116 6.2E-24 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_A0246 100363286ff151dc29acf648a6c91a47 141 Pfam PF07883 Cupin domain 44 112 3.2E-17 T 13-10-2018 IPR013096 Cupin 2, conserved barrel trd_A0246 100363286ff151dc29acf648a6c91a47 141 SUPERFAMILY SSF51182 15 134 9.28E-24 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_0597 976bae4341c82292165d943c8459a3ad 354 SUPERFAMILY SSF53850 59 340 8.36E-42 T 13-10-2018 trd_0597 976bae4341c82292165d943c8459a3ad 354 Pfam PF09084 NMT1/THI5 like 65 275 6.0E-69 T 13-10-2018 IPR015168 SsuA/THI5-like trd_0597 976bae4341c82292165d943c8459a3ad 354 Gene3D G3DSA:3.40.190.10 137 239 1.4E-88 T 13-10-2018 trd_0597 976bae4341c82292165d943c8459a3ad 354 Gene3D G3DSA:3.40.190.10 58 328 1.4E-88 T 13-10-2018 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 Pfam PF00166 Chaperonin 10 Kd subunit 7 98 2.5E-38 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 30 51 8.6E-34 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 86 99 8.6E-34 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 65 77 8.6E-34 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 8 23 8.6E-34 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 ProSitePatterns PS00681 Chaperonins cpn10 signature. 8 32 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 SUPERFAMILY SSF50129 6 100 4.8E-37 T 13-10-2018 IPR011032 GroES-like superfamily trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 Gene3D G3DSA:2.30.33.40 2 101 2.0E-43 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 SMART SM00883 7 99 1.4E-58 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_1301 014c50f9968f163a861b7cdcbe5c6547 101 Hamap MF_00580 10 kDa chaperonin [groS]. 7 100 28.014 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 trd_A0566 3003c6d53902a07be600be5528289cdb 291 Gene3D G3DSA:3.30.390.50 181 291 1.7E-31 T 13-10-2018 trd_A0566 3003c6d53902a07be600be5528289cdb 291 SMART SM01092 181 283 2.1E-28 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_A0566 3003c6d53902a07be600be5528289cdb 291 Gene3D G3DSA:3.30.465.10 60 173 5.2E-38 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_A0566 3003c6d53902a07be600be5528289cdb 291 SUPERFAMILY SSF55447 182 286 3.4E-28 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily trd_A0566 3003c6d53902a07be600be5528289cdb 291 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 182 282 2.1E-22 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_A0566 3003c6d53902a07be600be5528289cdb 291 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 1.5E-50 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 trd_A0566 3003c6d53902a07be600be5528289cdb 291 Gene3D G3DSA:3.30.43.10 1 54 5.7E-24 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 trd_A0566 3003c6d53902a07be600be5528289cdb 291 SUPERFAMILY SSF56176 1 176 2.8E-56 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_A0570 d64a41534357695a0769f0fff5299769 415 SUPERFAMILY SSF55874 278 406 2.88E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0570 d64a41534357695a0769f0fff5299769 415 SMART SM00387 312 409 2.7E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_A0570 d64a41534357695a0769f0fff5299769 415 SMART SM00065 36 184 2.8E-14 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_A0570 d64a41534357695a0769f0fff5299769 415 Pfam PF13185 GAF domain 36 175 1.8E-27 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_A0570 d64a41534357695a0769f0fff5299769 415 Gene3D G3DSA:3.30.565.10 277 407 2.0E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_A0570 d64a41534357695a0769f0fff5299769 415 SUPERFAMILY SSF55781 20 192 6.11E-29 T 13-10-2018 trd_A0570 d64a41534357695a0769f0fff5299769 415 Pfam PF07730 Histidine kinase 209 271 2.2E-12 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 trd_A0570 d64a41534357695a0769f0fff5299769 415 Gene3D G3DSA:3.30.450.40 32 184 2.6E-35 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_A0619 1fbea4f6b1858776a84c5de8db768863 102 Pfam PF08734 GYD domain 4 91 2.0E-30 T 13-10-2018 IPR014845 Protein GYD/TTHA1554 trd_0923 ec55323e273aa1d26e44375305e0228a 442 SUPERFAMILY SSF63882 12 205 1.83E-53 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_0923 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:3.40.980.10 204 354 2.6E-128 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_0923 ec55323e273aa1d26e44375305e0228a 442 SMART SM00852 209 345 4.9E-33 T 13-10-2018 IPR001453 MoaB/Mog domain trd_0923 ec55323e273aa1d26e44375305e0228a 442 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 281 314 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 trd_0923 ec55323e273aa1d26e44375305e0228a 442 Pfam PF03454 MoeA C-terminal region (domain IV) 358 428 2.3E-18 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_0923 ec55323e273aa1d26e44375305e0228a 442 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 206 341 2.4E-27 T 13-10-2018 IPR001453 MoaB/Mog domain trd_0923 ec55323e273aa1d26e44375305e0228a 442 SUPERFAMILY SSF53218 206 350 4.45E-37 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_0923 ec55323e273aa1d26e44375305e0228a 442 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 196 2.4E-46 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_0923 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:2.170.190.11 57 170 2.6E-128 T 13-10-2018 trd_0923 ec55323e273aa1d26e44375305e0228a 442 Pfam PF00994 Probable molybdopterin binding domain 209 343 1.4E-21 T 13-10-2018 IPR001453 MoaB/Mog domain trd_0923 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:3.90.105.10 35 203 2.6E-128 T 13-10-2018 trd_0923 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:2.40.340.10 355 424 2.6E-128 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_0923 ec55323e273aa1d26e44375305e0228a 442 SUPERFAMILY SSF63867 354 431 1.96E-20 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1606 8947fee2604aad8bbd0597b0fed4dda1 240 Pfam PF00535 Glycosyl transferase family 2 11 132 1.5E-32 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_1606 8947fee2604aad8bbd0597b0fed4dda1 240 Gene3D G3DSA:3.90.550.10 2 237 1.0E-58 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1606 8947fee2604aad8bbd0597b0fed4dda1 240 SUPERFAMILY SSF53448 9 231 5.63E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 Pfam PF13183 4Fe-4S dicluster domain 315 382 5.2E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 Gene3D G3DSA:3.30.70.20 312 383 1.7E-5 T 13-10-2018 trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 SUPERFAMILY SSF46548 300 404 3.19E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 Pfam PF02754 Cysteine-rich domain 494 576 7.6E-15 T 13-10-2018 IPR004017 Cysteine-rich domain trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 Pfam PF02754 Cysteine-rich domain 626 711 1.8E-15 T 13-10-2018 IPR004017 Cysteine-rich domain trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 Pfam PF02589 LUD domain 69 299 5.7E-61 T 13-10-2018 IPR003741 LUD domain trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 Gene3D G3DSA:3.40.50.10420 118 299 2.4E-31 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 368 379 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 SUPERFAMILY SSF100950 62 300 4.18E-47 T 13-10-2018 IPR037171 NagB/RpiA transferase-like trd_A0202 afbb85b7a8dbbd6ed55167bcedacf5d3 753 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 318 329 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 SUPERFAMILY SSF54826 1 108 1.57E-25 T 13-10-2018 trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 Pfam PF13378 Enolase C-terminal domain-like 133 374 8.4E-59 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 83 108 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 108 1.4E-15 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 Gene3D G3DSA:3.20.20.120 101 363 2.6E-115 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 SMART SM00922 129 254 2.3E-23 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 Gene3D G3DSA:3.30.390.10 19 373 2.6E-115 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_1956 e6edbf0b75f4637bb9fb63dfe698f279 390 SUPERFAMILY SSF51604 96 379 2.75E-78 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_A0802 75e41fcd3a3905b53e502fcf2b0b23b8 200 TIGRFAM TIGR03552 F420_cofC: 2-phospho-L-lactate guanylyltransferase 5 199 4.1E-58 T 13-10-2018 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198 trd_A0802 75e41fcd3a3905b53e502fcf2b0b23b8 200 SUPERFAMILY SSF53448 3 194 1.19E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0802 75e41fcd3a3905b53e502fcf2b0b23b8 200 Pfam PF01983 Guanylyl transferase CofC like 5 190 2.4E-18 T 13-10-2018 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198 trd_A0802 75e41fcd3a3905b53e502fcf2b0b23b8 200 Gene3D G3DSA:3.90.550.10 2 176 2.7E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0802 75e41fcd3a3905b53e502fcf2b0b23b8 200 Hamap MF_02114 2-phospho-L-lactate guanylyltransferase [cofC]. 3 198 21.614 T 13-10-2018 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198 trd_1590 38299c94e434c2040ca7421a03b49dad 381 SUPERFAMILY SSF53335 4 356 5.81E-89 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1590 38299c94e434c2040ca7421a03b49dad 381 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 62 294 2.3E-50 T 13-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 trd_1590 38299c94e434c2040ca7421a03b49dad 381 Gene3D G3DSA:3.40.50.12710 2 373 2.8E-100 T 13-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 Gene3D G3DSA:3.40.50.800 370 466 8.4E-35 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 Pfam PF03129 Anticodon binding domain 374 463 5.8E-24 T 13-10-2018 IPR004154 Anticodon-binding trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 30 44 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 411 430 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 148 160 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 325 337 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 201 218 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 169 186 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 218 228 2.2E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 SUPERFAMILY SSF55681 8 377 1.19E-121 T 13-10-2018 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 11 244 5.6E-94 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 168 342 3.0E-8 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 SUPERFAMILY SSF52954 361 466 1.81E-35 T 13-10-2018 trd_1053 97c6c5e666d0a88065f7e59ffa310ffc 468 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 8 466 50.705 T 13-10-2018 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 trd_A0108 38c379f003853203c6d2f16a8d3314ab 482 TIGRFAM TIGR02688 TIGR02688: TIGR02688 family protein 18 465 2.4E-185 T 13-10-2018 IPR014061 Conserved hypothetical protein CHP02688 trd_A0108 38c379f003853203c6d2f16a8d3314ab 482 Pfam PF13337 Putative ATP-dependent Lon protease 21 469 1.0E-135 T 13-10-2018 IPR014061 Conserved hypothetical protein CHP02688 trd_0669 1fc03151f7b9d51369dcdc54fbe0d57d 74 SUPERFAMILY SSF54913 9 71 3.56E-6 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_0669 1fc03151f7b9d51369dcdc54fbe0d57d 74 Pfam PF09413 Putative prokaryotic signal transducing protein 12 71 3.4E-7 T 13-10-2018 IPR018551 Domain of unknown function DUF2007 trd_0769 28fbe6749078289c0e0d545b88033ede 334 PIRSF PIRSF004491 1 309 5.7E-93 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 trd_0769 28fbe6749078289c0e0d545b88033ede 334 Gene3D G3DSA:3.40.50.620 3 182 6.5E-59 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0769 28fbe6749078289c0e0d545b88033ede 334 SUPERFAMILY SSF52374 14 172 3.56E-31 T 13-10-2018 trd_0769 28fbe6749078289c0e0d545b88033ede 334 Pfam PF06574 FAD synthetase 13 164 1.8E-49 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 trd_0769 28fbe6749078289c0e0d545b88033ede 334 Pfam PF01687 Riboflavin kinase 181 303 1.0E-28 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 trd_0769 28fbe6749078289c0e0d545b88033ede 334 SMART SM00904 180 305 1.2E-41 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 trd_0769 28fbe6749078289c0e0d545b88033ede 334 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 17 304 4.0E-71 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 trd_0769 28fbe6749078289c0e0d545b88033ede 334 Gene3D G3DSA:2.40.30.30 183 313 2.5E-36 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 trd_0769 28fbe6749078289c0e0d545b88033ede 334 SUPERFAMILY SSF82114 171 305 4.8E-38 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 trd_A0091 21069eef9766b0feb2d859fa98c41444 331 Pfam PF00005 ABC transporter 40 182 1.5E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0091 21069eef9766b0feb2d859fa98c41444 331 SMART SM00382 48 239 5.0E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0091 21069eef9766b0feb2d859fa98c41444 331 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 29 213 4.4E-39 T 13-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 trd_A0091 21069eef9766b0feb2d859fa98c41444 331 Gene3D G3DSA:3.40.50.300 11 248 2.1E-68 T 13-10-2018 trd_A0091 21069eef9766b0feb2d859fa98c41444 331 SUPERFAMILY SSF52540 20 249 2.19E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0091 21069eef9766b0feb2d859fa98c41444 331 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1050 f5368390906a038c0599eb275abe6698 313 Pfam PF08281 Sigma-70, region 4 251 299 3.0E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1050 f5368390906a038c0599eb275abe6698 313 SUPERFAMILY SSF88659 226 307 2.43E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1050 f5368390906a038c0599eb275abe6698 313 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 142 303 1.2E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1050 f5368390906a038c0599eb275abe6698 313 Pfam PF04542 Sigma-70 region 2 147 214 7.0E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_1050 f5368390906a038c0599eb275abe6698 313 SUPERFAMILY SSF88946 125 222 2.98E-28 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_1050 f5368390906a038c0599eb275abe6698 313 Gene3D G3DSA:1.10.10.10 241 308 5.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1050 f5368390906a038c0599eb275abe6698 313 Gene3D G3DSA:1.10.1740.10 124 237 5.1E-29 T 13-10-2018 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF06733 DEAD_2 439 509 5.3E-5 T 13-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 SMART SM00491 797 926 6.0E-25 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF53098 3 176 1.48E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 435 922 4.61E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 263 920 1.11E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Gene3D G3DSA:3.30.420.10 3 162 1.9E-39 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Gene3D G3DSA:3.40.50.300 762 950 6.4E-32 T 13-10-2018 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Gene3D G3DSA:3.40.50.300 268 523 9.8E-45 T 13-10-2018 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Hamap MF_02206 3'-5' exonuclease DinG [dinG]. 1 958 24.204 T 13-10-2018 IPR006310 3'-5' exonuclease DinG GO:0005524|GO:0008408 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF00929 Exonuclease 6 156 4.0E-25 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 SMART SM00487 266 569 0.0023 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF13307 Helicase C-terminal domain 779 939 3.8E-32 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 trd_0335 5233d3635daedc88a5bf10ad0e10db98 982 SMART SM00479 4 165 7.0E-39 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III trd_0184 3d047a7a149208020f155fa6f4e9626c 427 SMART SM00287 204 274 1.1 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0184 3d047a7a149208020f155fa6f4e9626c 427 SMART SM00287 111 182 2.5 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0184 3d047a7a149208020f155fa6f4e9626c 427 SMART SM00287 37 107 0.018 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0184 3d047a7a149208020f155fa6f4e9626c 427 Gene3D G3DSA:2.30.30.40 200 269 4.9E-9 T 13-10-2018 trd_0184 3d047a7a149208020f155fa6f4e9626c 427 Gene3D G3DSA:2.30.30.40 43 104 3.4E-12 T 13-10-2018 trd_0184 3d047a7a149208020f155fa6f4e9626c 427 SUPERFAMILY SSF54001 295 425 1.41E-43 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily trd_0184 3d047a7a149208020f155fa6f4e9626c 427 Gene3D G3DSA:3.90.1720.10 270 420 1.0E-45 T 13-10-2018 trd_0184 3d047a7a149208020f155fa6f4e9626c 427 Pfam PF00877 NlpC/P60 family 317 424 1.7E-26 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain trd_0184 3d047a7a149208020f155fa6f4e9626c 427 Pfam PF08239 Bacterial SH3 domain 215 270 2.1E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0184 3d047a7a149208020f155fa6f4e9626c 427 Pfam PF08239 Bacterial SH3 domain 47 103 8.4E-14 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_A0909 531f8adb7a65fbc19b5665dc0092a208 257 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 13 233 3.4E-71 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 trd_A0909 531f8adb7a65fbc19b5665dc0092a208 257 SUPERFAMILY SSF53335 8 227 1.99E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_A0909 531f8adb7a65fbc19b5665dc0092a208 257 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 4 234 32.508 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 trd_A0909 531f8adb7a65fbc19b5665dc0092a208 257 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 143 157 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 trd_A0909 531f8adb7a65fbc19b5665dc0092a208 257 Gene3D G3DSA:3.40.50.150 19 235 1.4E-62 T 13-10-2018 trd_A0909 531f8adb7a65fbc19b5665dc0092a208 257 Pfam PF01209 ubiE/COQ5 methyltransferase family 12 233 9.6E-58 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 trd_A0350 24a57534d6b6889a3590e18adec066a0 445 Pfam PF00571 CBS domain 219 272 3.9E-8 T 13-10-2018 IPR000644 CBS domain trd_A0350 24a57534d6b6889a3590e18adec066a0 445 Pfam PF00571 CBS domain 289 338 1.9E-8 T 13-10-2018 IPR000644 CBS domain trd_A0350 24a57534d6b6889a3590e18adec066a0 445 SUPERFAMILY SSF54631 211 353 2.53E-33 T 13-10-2018 trd_A0350 24a57534d6b6889a3590e18adec066a0 445 SMART SM01091 353 435 3.3E-20 T 13-10-2018 IPR005170 Transporter-associated domain trd_A0350 24a57534d6b6889a3590e18adec066a0 445 Pfam PF03471 Transporter associated domain 354 433 2.4E-17 T 13-10-2018 IPR005170 Transporter-associated domain trd_A0350 24a57534d6b6889a3590e18adec066a0 445 Gene3D G3DSA:3.30.465.10 349 433 6.2E-18 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_A0350 24a57534d6b6889a3590e18adec066a0 445 SUPERFAMILY SSF56176 352 440 9.54E-18 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_A0350 24a57534d6b6889a3590e18adec066a0 445 Pfam PF01595 Domain of unknown function DUF21 9 201 2.5E-45 T 13-10-2018 IPR002550 CNNM, transmembrane domain trd_A0350 24a57534d6b6889a3590e18adec066a0 445 Gene3D G3DSA:3.10.580.10 197 348 1.2E-47 T 13-10-2018 trd_A0350 24a57534d6b6889a3590e18adec066a0 445 SMART SM00116 290 338 0.017 T 13-10-2018 IPR000644 CBS domain trd_A0350 24a57534d6b6889a3590e18adec066a0 445 SMART SM00116 225 274 4.4E-8 T 13-10-2018 IPR000644 CBS domain trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 Pfam PF00224 Pyruvate kinase, barrel domain 11 346 2.1E-95 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:3.40.1380.20 336 478 4.7E-30 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF50800 81 170 6.45E-15 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 Pfam PF02887 Pyruvate kinase, alpha/beta domain 362 474 2.7E-21 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 ProSitePatterns PS00110 Pyruvate kinase active site signature. 221 233 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:2.40.33.10 80 174 5.9E-114 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:3.20.20.60 14 335 5.9E-114 T 13-10-2018 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF51621 9 345 4.57E-86 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 275 299 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 193 207 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 250 274 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 223 249 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 319 335 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 300 318 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 68 84 2.6E-54 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 11 478 7.1E-137 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_1728 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF52935 329 477 1.27E-28 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 trd_A0325 a8fc14a80691a40b9177fc1e6e3234aa 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 308 3.8E-36 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0325 a8fc14a80691a40b9177fc1e6e3234aa 310 SUPERFAMILY SSF161098 94 292 5.72E-19 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0325 a8fc14a80691a40b9177fc1e6e3234aa 310 Gene3D G3DSA:1.10.3720.10 88 303 1.0E-20 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 463 3.9E-122 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 SUPERFAMILY SSF55021 393 466 3.72E-24 T 13-10-2018 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 Gene3D G3DSA:3.30.2130.10 306 464 1.9E-45 T 13-10-2018 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 SUPERFAMILY SSF55021 308 385 5.0E-17 T 13-10-2018 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 464 4.2E-132 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 Pfam PF00696 Amino acid kinase family 2 288 6.4E-56 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 Gene3D G3DSA:3.40.1160.10 1 303 6.8E-109 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 Pfam PF01842 ACT domain 405 462 3.2E-10 T 13-10-2018 IPR002912 ACT domain trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 SUPERFAMILY SSF53633 1 302 6.68E-85 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 PIRSF PIRSF000726 1 471 2.5E-124 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 trd_A0414 ded4b4d4048a78e4274b0c0240951265 476 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 trd_1023 e11381db0816954e86d35ac0d0faf492 832 SMART SM00464 34 226 2.8E-54 T 13-10-2018 IPR003111 Lon, substrate-binding domain trd_1023 e11381db0816954e86d35ac0d0faf492 832 PIRSF PIRSF001174 18 806 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 trd_1023 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:3.40.50.300 337 521 5.2E-67 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 TIGRFAM TIGR00763 lon: endopeptidase La 36 802 1.0E-287 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 trd_1023 e11381db0816954e86d35ac0d0faf492 832 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 601 803 8.7E-89 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 trd_1023 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 705 724 1.9E-49 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 387 406 1.9E-49 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 735 754 1.9E-49 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 758 776 1.9E-49 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 627 643 1.9E-49 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 Hamap MF_01973 Lon protease [lon]. 35 804 69.75 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 trd_1023 e11381db0816954e86d35ac0d0faf492 832 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 35 225 1.9E-40 T 13-10-2018 IPR003111 Lon, substrate-binding domain trd_1023 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:2.30.130.40 19 141 4.0E-34 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:3.30.230.10 625 814 3.4E-79 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1023 e11381db0816954e86d35ac0d0faf492 832 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 383 521 3.3E-23 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1023 e11381db0816954e86d35ac0d0faf492 832 SUPERFAMILY SSF88697 35 224 8.45E-47 T 13-10-2018 IPR015947 PUA-like superfamily trd_1023 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:1.20.58.1480 145 268 3.0E-35 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 708 716 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 trd_1023 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:1.10.8.60 522 615 1.4E-31 T 13-10-2018 trd_1023 e11381db0816954e86d35ac0d0faf492 832 SUPERFAMILY SSF54211 627 803 9.48E-56 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1023 e11381db0816954e86d35ac0d0faf492 832 SUPERFAMILY SSF52540 331 616 4.32E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1023 e11381db0816954e86d35ac0d0faf492 832 SMART SM00382 379 524 7.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0914 e53f4ad2846b8fdd18a253ccf9ca464f 306 SUPERFAMILY SSF103481 219 303 5.49E-14 T 13-10-2018 trd_A0914 e53f4ad2846b8fdd18a253ccf9ca464f 306 Pfam PF00892 EamA-like transporter family 164 299 5.1E-25 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0914 e53f4ad2846b8fdd18a253ccf9ca464f 306 Pfam PF00892 EamA-like transporter family 19 150 4.9E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0914 e53f4ad2846b8fdd18a253ccf9ca464f 306 SUPERFAMILY SSF103481 53 154 7.06E-13 T 13-10-2018 trd_1433 1586563b75322522578d3392b21726f7 408 Gene3D G3DSA:1.20.1250.20 4 227 8.5E-29 T 13-10-2018 trd_1433 1586563b75322522578d3392b21726f7 408 Gene3D G3DSA:1.20.1250.20 228 407 7.2E-22 T 13-10-2018 trd_1433 1586563b75322522578d3392b21726f7 408 Pfam PF07690 Major Facilitator Superfamily 15 351 1.2E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1433 1586563b75322522578d3392b21726f7 408 PRINTS PR01035 Tetracycline resistance protein signature 17 33 3.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_1433 1586563b75322522578d3392b21726f7 408 PRINTS PR01035 Tetracycline resistance protein signature 133 155 3.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_1433 1586563b75322522578d3392b21726f7 408 PRINTS PR01035 Tetracycline resistance protein signature 240 260 3.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 trd_1433 1586563b75322522578d3392b21726f7 408 ProSitePatterns PS00216 Sugar transport proteins signature 1. 265 281 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_1433 1586563b75322522578d3392b21726f7 408 SUPERFAMILY SSF103473 8 394 9.55E-58 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0767 ad969f9e766952332c967dc794a7cf9e 369 SUPERFAMILY SSF50129 318 367 4.71E-8 T 13-10-2018 IPR011032 GroES-like superfamily trd_0767 ad969f9e766952332c967dc794a7cf9e 369 Gene3D G3DSA:3.40.50.720 173 310 1.0E-135 T 13-10-2018 trd_0767 ad969f9e766952332c967dc794a7cf9e 369 Pfam PF00107 Zinc-binding dehydrogenase 196 324 1.6E-33 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_0767 ad969f9e766952332c967dc794a7cf9e 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 153 6.7E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_0767 ad969f9e766952332c967dc794a7cf9e 369 SMART SM00829 13 367 7.7E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_0767 ad969f9e766952332c967dc794a7cf9e 369 SUPERFAMILY SSF51735 157 333 3.68E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0767 ad969f9e766952332c967dc794a7cf9e 369 SUPERFAMILY SSF50129 1 192 5.63E-65 T 13-10-2018 IPR011032 GroES-like superfamily trd_0767 ad969f9e766952332c967dc794a7cf9e 369 Gene3D G3DSA:3.90.180.10 7 361 1.0E-135 T 13-10-2018 trd_0767 ad969f9e766952332c967dc794a7cf9e 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 Pfam PF01795 MraW methylase family 15 320 2.7E-106 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 SUPERFAMILY SSF81799 126 225 1.44E-32 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 17 321 37.667 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 PIRSF PIRSF004486 12 322 7.2E-105 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 15 320 2.8E-96 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 Gene3D G3DSA:1.10.150.170 124 226 1.1E-105 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 trd_0056 90c1782403b00c86a26756b352f1d6c4 326 SUPERFAMILY SSF53335 17 321 1.04E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0056 90c1782403b00c86a26756b352f1d6c4 326 Gene3D G3DSA:3.40.50.150 17 319 1.1E-105 T 13-10-2018 trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 Gene3D G3DSA:2.130.10.10 253 364 1.9E-7 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 Gene3D G3DSA:2.130.10.10 142 252 1.4E-17 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 Gene3D G3DSA:2.130.10.10 1 141 3.1E-35 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 Gene3D G3DSA:2.130.10.10 430 659 5.7E-46 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 Pfam PF15902 Sortilin, neurotensin receptor 3, 538 656 4.7E-9 T 13-10-2018 IPR031778 Sortilin, N-terminal trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 SUPERFAMILY SSF50939 4 358 5.69E-63 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 trd_1897 097b80c9cbcc9a88b8090d58aa3fffb5 1034 SUPERFAMILY SSF110296 257 662 3.66E-57 T 13-10-2018 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 Gene3D G3DSA:3.20.20.10 47 307 2.5E-147 T 13-10-2018 IPR029066 PLP-binding barrel trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 208 221 3.4E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 72 90 3.4E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 297 316 3.4E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 92 104 3.4E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 398 411 3.4E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 49 306 6.9E-56 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 Gene3D G3DSA:2.40.37.10 27 437 2.5E-147 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 SUPERFAMILY SSF51419 39 309 9.81E-72 T 13-10-2018 IPR029066 PLP-binding barrel trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 307 398 5.8E-17 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 SUPERFAMILY SSF50621 282 440 2.3E-46 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 28 441 38.297 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 18 440 6.7E-133 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 180 189 1.6E-23 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 408 430 1.6E-23 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 90 107 1.6E-23 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 326 344 1.6E-23 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_1714 92dffdb5a4cd4bf04c78db769f7616c6 449 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 72 90 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site trd_1182 39961e1fb45a5f85aa53c19490038fcd 370 Pfam PF01168 Alanine racemase, N-terminal domain 17 243 1.7E-36 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_1182 39961e1fb45a5f85aa53c19490038fcd 370 Gene3D G3DSA:3.20.20.10 19 242 1.1E-129 T 13-10-2018 IPR029066 PLP-binding barrel trd_1182 39961e1fb45a5f85aa53c19490038fcd 370 Pfam PF14031 Putative serine dehydratase domain 259 352 1.9E-25 T 13-10-2018 IPR026956 D-serine dehydratase-like domain trd_1182 39961e1fb45a5f85aa53c19490038fcd 370 Gene3D G3DSA:2.40.37.20 10 366 1.1E-129 T 13-10-2018 trd_1182 39961e1fb45a5f85aa53c19490038fcd 370 SUPERFAMILY SSF51419 17 247 3.01E-44 T 13-10-2018 IPR029066 PLP-binding barrel trd_1182 39961e1fb45a5f85aa53c19490038fcd 370 SMART SM01119 259 353 7.0E-43 T 13-10-2018 IPR026956 D-serine dehydratase-like domain trd_1935 a344e6b35556387b88b708b6ad60637e 814 Gene3D G3DSA:3.20.110.20 3 326 1.2E-23 T 13-10-2018 trd_1935 a344e6b35556387b88b708b6ad60637e 814 Pfam PF12055 Domain of unknown function (DUF3536) 337 620 1.4E-109 T 13-10-2018 IPR021923 Protein of unknown function DUF3536 trd_1935 a344e6b35556387b88b708b6ad60637e 814 SUPERFAMILY SSF88713 3 323 1.74E-70 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_1935 a344e6b35556387b88b708b6ad60637e 814 Pfam PF03065 Glycosyl hydrolase family 57 110 310 5.6E-17 T 13-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 SMART SM00448 2 112 1.9E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 SMART SM00862 145 219 3.7E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 SUPERFAMILY SSF52172 1 177 6.26E-44 T 13-10-2018 IPR011006 CheY-like superfamily trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Pfam PF00072 Response regulator receiver domain 4 113 2.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Gene3D G3DSA:1.10.10.10 124 223 1.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 2.8E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_1273 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Gene3D G3DSA:3.40.50.2300 1 122 3.1E-39 T 13-10-2018 trd_1358 ecd416ce167d3a941d44310ec988dba0 198 SUPERFAMILY SSF52833 2 190 3.96E-27 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1358 ecd416ce167d3a941d44310ec988dba0 198 Pfam PF01323 DSBA-like thioredoxin domain 2 183 1.2E-12 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 trd_1358 ecd416ce167d3a941d44310ec988dba0 198 Gene3D G3DSA:3.40.30.10 1 195 2.6E-30 T 13-10-2018 trd_1325 ebdecb0c911bda121dde1d3efd60df7d 282 Gene3D G3DSA:3.20.20.20 16 281 2.6E-107 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 trd_1325 ebdecb0c911bda121dde1d3efd60df7d 282 SUPERFAMILY SSF51717 19 279 2.09E-95 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 trd_1325 ebdecb0c911bda121dde1d3efd60df7d 282 Pfam PF00809 Pterin binding enzyme 28 262 5.7E-81 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 trd_1325 ebdecb0c911bda121dde1d3efd60df7d 282 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 61 74 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 trd_1325 ebdecb0c911bda121dde1d3efd60df7d 282 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 27 276 1.8E-91 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Gene3D G3DSA:3.20.20.120 101 368 5.5E-64 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 SMART SM00922 124 259 6.1E-6 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Pfam PF13378 Enolase C-terminal domain-like 136 382 5.8E-40 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 SUPERFAMILY SSF54826 3 106 3.07E-22 T 13-10-2018 trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 SUPERFAMILY SSF51604 89 389 4.95E-58 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 16 101 5.2E-14 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 76 101 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_1945 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Gene3D G3DSA:3.30.390.10 7 100 2.7E-23 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_0616 b9492e040d4ea27d87b62f07ef105523 150 Pfam PF00498 FHA domain 79 142 2.4E-20 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 trd_0616 b9492e040d4ea27d87b62f07ef105523 150 SMART SM00240 77 127 5.8E-16 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 trd_0616 b9492e040d4ea27d87b62f07ef105523 150 SUPERFAMILY SSF49879 41 147 4.78E-27 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 trd_0616 b9492e040d4ea27d87b62f07ef105523 150 Gene3D G3DSA:2.60.200.20 36 149 2.4E-29 T 13-10-2018 trd_1867 73e058fb0d1a170a5a057efdba60013d 371 Gene3D G3DSA:3.40.50.11740 61 299 3.1E-110 T 13-10-2018 trd_1867 73e058fb0d1a170a5a057efdba60013d 371 Gene3D G3DSA:3.40.50.11750 27 258 3.1E-110 T 13-10-2018 trd_1867 73e058fb0d1a170a5a057efdba60013d 371 Gene3D G3DSA:1.10.10.2140 314 363 5.5E-24 T 13-10-2018 trd_1867 73e058fb0d1a170a5a057efdba60013d 371 Pfam PF01924 Hydrogenase formation hypA family 12 361 1.4E-154 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 trd_1867 73e058fb0d1a170a5a057efdba60013d 371 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 363 3.1E-148 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 trd_1867 73e058fb0d1a170a5a057efdba60013d 371 PIRSF PIRSF005622 1 367 2.1E-156 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 SUPERFAMILY SSF88659 114 182 5.01E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 Gene3D G3DSA:1.10.10.10 92 183 2.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 SUPERFAMILY SSF88946 6 113 5.34E-27 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 182 4.1E-33 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 Pfam PF04542 Sigma-70 region 2 28 96 6.0E-20 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 Gene3D G3DSA:1.10.1740.10 10 91 1.3E-28 T 13-10-2018 trd_A0321 c196fb11dc6b4739c4cd37acd7efb8f1 188 Pfam PF08281 Sigma-70, region 4 128 178 1.4E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_A0221 e6820cbe7502c7972f445e0fa68ea9c9 135 Pfam PF02561 Flagellar protein FliS 6 118 1.0E-34 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 trd_A0221 e6820cbe7502c7972f445e0fa68ea9c9 135 Gene3D G3DSA:1.20.120.340 1 123 3.1E-37 T 13-10-2018 trd_A0221 e6820cbe7502c7972f445e0fa68ea9c9 135 PIRSF PIRSF039090 1 128 6.4E-30 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 trd_A0221 e6820cbe7502c7972f445e0fa68ea9c9 135 SUPERFAMILY SSF101116 4 121 7.19E-30 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 trd_A0221 e6820cbe7502c7972f445e0fa68ea9c9 135 TIGRFAM TIGR00208 fliS: flagellar protein FliS 3 119 2.0E-27 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 trd_1749 bf66af648791262d7aaf312884e918cd 304 SUPERFAMILY SSF52821 168 297 6.16E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1749 bf66af648791262d7aaf312884e918cd 304 SMART SM00450 174 294 1.3E-12 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1749 bf66af648791262d7aaf312884e918cd 304 SMART SM00450 35 150 1.5E-21 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1749 bf66af648791262d7aaf312884e918cd 304 Gene3D G3DSA:3.40.250.10 170 299 1.2E-25 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1749 bf66af648791262d7aaf312884e918cd 304 Pfam PF00581 Rhodanese-like domain 178 289 3.5E-10 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1749 bf66af648791262d7aaf312884e918cd 304 Pfam PF00581 Rhodanese-like domain 37 146 9.3E-17 T 13-10-2018 IPR001763 Rhodanese-like domain trd_1749 bf66af648791262d7aaf312884e918cd 304 Gene3D G3DSA:3.40.250.10 22 166 1.0E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_1749 bf66af648791262d7aaf312884e918cd 304 ProSitePatterns PS00380 Rhodanese signature 1. 60 71 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 trd_1749 bf66af648791262d7aaf312884e918cd 304 SUPERFAMILY SSF52821 34 200 3.67E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_A0094 bd6b6af13ad6f558de0db11bb4c7adca 146 SUPERFAMILY SSF159888 36 105 1.7E-10 T 13-10-2018 trd_1855 3800c16d91bbcb3441c36cd7bac1cea4 514 Pfam PF01968 Hydantoinase/oxoprolinase 192 360 1.0E-28 T 13-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 trd_1855 3800c16d91bbcb3441c36cd7bac1cea4 514 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 3 170 1.9E-33 T 13-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 trd_1855 3800c16d91bbcb3441c36cd7bac1cea4 514 SUPERFAMILY SSF53067 4 440 1.02E-19 T 13-10-2018 trd_1855 3800c16d91bbcb3441c36cd7bac1cea4 514 Gene3D G3DSA:3.30.420.40 2 83 6.1E-7 T 13-10-2018 trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 Gene3D G3DSA:3.40.366.10 13 299 1.6E-99 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 Gene3D G3DSA:3.30.70.250 140 209 1.6E-99 T 13-10-2018 trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 PIRSF PIRSF000446 8 313 2.8E-99 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 SUPERFAMILY SSF55048 141 208 7.19E-18 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 14 312 8.0E-41 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 11 303 9.1E-99 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 Pfam PF00698 Acyl transferase domain 14 303 1.7E-41 T 13-10-2018 IPR014043 Acyl transferase trd_A0446 c0a4d7246ce8946f2245c89523ad7821 316 SUPERFAMILY SSF52151 11 311 2.62E-70 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase trd_1604 66575813c4ead4aac67d2827bc24a879 197 Pfam PF00227 Proteasome subunit 6 178 9.4E-23 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 trd_1604 66575813c4ead4aac67d2827bc24a879 197 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 9 180 38.346 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 trd_1604 66575813c4ead4aac67d2827bc24a879 197 SUPERFAMILY SSF56235 6 178 6.51E-56 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_1604 66575813c4ead4aac67d2827bc24a879 197 Gene3D G3DSA:3.60.20.10 6 179 2.8E-61 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_1604 66575813c4ead4aac67d2827bc24a879 197 PIRSF PIRSF039093 3 182 2.4E-78 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 trd_1604 66575813c4ead4aac67d2827bc24a879 197 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 10 178 2.0E-76 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 trd_0906 330ac2d6e02d6f8adbbd533ffe795676 326 Gene3D G3DSA:3.10.180.10 158 325 4.4E-44 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0906 330ac2d6e02d6f8adbbd533ffe795676 326 SUPERFAMILY SSF54593 14 279 6.57E-39 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0906 330ac2d6e02d6f8adbbd533ffe795676 326 Gene3D G3DSA:3.10.180.10 8 140 6.4E-38 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0906 330ac2d6e02d6f8adbbd533ffe795676 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 123 2.3E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_0906 330ac2d6e02d6f8adbbd533ffe795676 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 159 277 9.2E-14 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_0684 e2614707427eb9790192f7e6aebb2556 132 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 7 52 3.9E-18 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0684 e2614707427eb9790192f7e6aebb2556 132 TIGRFAM TIGR00855 L12: ribosomal protein bL12 6 132 3.8E-47 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0684 e2614707427eb9790192f7e6aebb2556 132 Gene3D G3DSA:3.30.1390.10 62 132 1.9E-32 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like trd_0684 e2614707427eb9790192f7e6aebb2556 132 SUPERFAMILY SSF48300 7 68 7.06E-16 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0684 e2614707427eb9790192f7e6aebb2556 132 Gene3D G3DSA:1.20.5.710 7 61 7.7E-23 T 13-10-2018 trd_0684 e2614707427eb9790192f7e6aebb2556 132 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 68 132 3.0E-19 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0684 e2614707427eb9790192f7e6aebb2556 132 SUPERFAMILY SSF54736 61 132 1.73E-25 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like trd_0684 e2614707427eb9790192f7e6aebb2556 132 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 66 132 1.9E-31 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0684 e2614707427eb9790192f7e6aebb2556 132 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 132 25.589 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1421 68fa191da691064c694c0ed8526fa5ed 472 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 287 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1421 68fa191da691064c694c0ed8526fa5ed 472 SUPERFAMILY SSF53383 13 446 3.78E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1421 68fa191da691064c694c0ed8526fa5ed 472 Gene3D G3DSA:3.40.640.10 77 333 1.6E-153 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1421 68fa191da691064c694c0ed8526fa5ed 472 Gene3D G3DSA:3.90.1150.10 18 443 1.6E-153 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1421 68fa191da691064c694c0ed8526fa5ed 472 Pfam PF00202 Aminotransferase class-III 40 375 2.3E-63 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1681 0c65bfac91eebe52b5af6c602706cdef 604 Gene3D G3DSA:3.50.30.10 498 603 1.4E-33 T 13-10-2018 trd_1681 0c65bfac91eebe52b5af6c602706cdef 604 SUPERFAMILY SSF52009 495 602 1.28E-30 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 trd_1681 0c65bfac91eebe52b5af6c602706cdef 604 Pfam PF00391 PEP-utilising enzyme, mobile domain 527 598 1.6E-23 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 trd_A0906 cbde1f85fbd92d15b25b286c07000fbf 437 SUPERFAMILY SSF53822 70 428 9.16E-81 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_A0906 cbde1f85fbd92d15b25b286c07000fbf 437 Pfam PF13458 Periplasmic binding protein 71 414 2.2E-67 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_A0906 cbde1f85fbd92d15b25b286c07000fbf 437 Gene3D G3DSA:3.40.50.2300 190 408 1.8E-103 T 13-10-2018 trd_A0906 cbde1f85fbd92d15b25b286c07000fbf 437 Gene3D G3DSA:3.40.50.2300 72 406 1.8E-103 T 13-10-2018 trd_1136 fc8c3e3b38901021fb1604a7250c9085 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 266 2.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1136 fc8c3e3b38901021fb1604a7250c9085 281 SUPERFAMILY SSF161098 10 281 2.71E-71 T 13-10-2018 IPR035906 MetI-like superfamily trd_1136 fc8c3e3b38901021fb1604a7250c9085 281 Gene3D G3DSA:1.10.3720.10 3 267 9.7E-65 T 13-10-2018 IPR035906 MetI-like superfamily trd_1221 04124d71bc8b6d112b2ccd1009156c06 161 Gene3D G3DSA:1.10.8.640 26 102 2.6E-24 T 13-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily trd_1221 04124d71bc8b6d112b2ccd1009156c06 161 Pfam PF03918 Cytochrome C biogenesis protein 31 154 3.4E-34 T 13-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family trd_0223 a4440e23c701d4700b96f16cee837fa9 623 PIRSF PIRSF002741 55 614 2.4E-84 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_0223 a4440e23c701d4700b96f16cee837fa9 623 SUPERFAMILY SSF53850 86 620 1.7E-120 T 13-10-2018 trd_0223 a4440e23c701d4700b96f16cee837fa9 623 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 131 496 5.7E-81 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_0223 a4440e23c701d4700b96f16cee837fa9 623 Gene3D G3DSA:3.10.105.10 357 591 3.7E-48 T 13-10-2018 trd_0223 a4440e23c701d4700b96f16cee837fa9 623 Gene3D G3DSA:3.40.190.10 48 336 4.6E-66 T 13-10-2018 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF53738 7 177 1.22E-38 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.2E-24 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.2E-24 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.2E-24 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 217 1.2E-24 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 444 2.8E-9 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 122 3.0E-38 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF53738 258 362 1.22E-32 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 253 9.2E-25 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.30.310.50 369 447 6.0E-27 T 13-10-2018 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.40.120.10 5 149 9.4E-56 T 13-10-2018 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 TIGRFAM TIGR03990 Arch_GlmM: phosphoglucosamine mutase 7 445 6.1E-139 T 13-10-2018 IPR024086 Phosphoglucosamine mutase, archaeal type GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF55957 367 447 1.74E-20 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.40.120.10 250 366 1.5E-41 T 13-10-2018 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF53738 153 256 8.63E-30 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 3.2E-27 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 trd_1178 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.40.120.10 172 249 1.9E-32 T 13-10-2018 trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 SMART SM00418 39 118 1.8E-27 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 SUPERFAMILY SSF46785 32 117 7.58E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 Pfam PF01022 Bacterial regulatory protein, arsR family 46 92 1.4E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 Gene3D G3DSA:1.10.10.10 10 119 1.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 74 89 4.1E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 4.1E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1484 bd0849f1145445bf97623ca01fa5eb29 141 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 89 104 4.1E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0003 79b26a62c07247ae7360850b6387bf06 774 SUPERFAMILY SSF81606 35 214 3.53E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0003 79b26a62c07247ae7360850b6387bf06 774 SUPERFAMILY SSF63829 505 749 2.68E-6 T 13-10-2018 trd_A0706 3f8e85caef730632c30883c3f1ec4c97 345 SUPERFAMILY SSF53697 4 343 7.85E-75 T 13-10-2018 trd_A0706 3f8e85caef730632c30883c3f1ec4c97 345 Pfam PF01380 SIS domain 199 289 3.4E-14 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 trd_A0706 3f8e85caef730632c30883c3f1ec4c97 345 Pfam PF01380 SIS domain 40 162 6.1E-18 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 trd_A0706 3f8e85caef730632c30883c3f1ec4c97 345 Gene3D G3DSA:3.40.50.10490 189 343 2.2E-42 T 13-10-2018 trd_A0706 3f8e85caef730632c30883c3f1ec4c97 345 Gene3D G3DSA:3.40.50.10490 2 185 1.7E-46 T 13-10-2018 trd_A0055 fa7fee42e16437580d4026280c5092a5 139 Gene3D G3DSA:3.10.450.50 29 132 9.9E-6 T 13-10-2018 trd_A0055 fa7fee42e16437580d4026280c5092a5 139 SUPERFAMILY SSF54427 32 131 3.15E-8 T 13-10-2018 IPR032710 NTF2-like domain superfamily trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 SUPERFAMILY SSF50249 16 93 8.05E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 Hamap MF_00201 DNA repair protein RecO [recO]. 16 263 28.023 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 TIGRFAM TIGR00613 reco: DNA repair protein RecO 19 255 2.9E-44 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 Gene3D G3DSA:2.40.50.140 13 97 4.2E-27 T 13-10-2018 trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 Gene3D G3DSA:3.30.60.100 161 202 1.3E-25 T 13-10-2018 trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 Pfam PF02565 Recombination protein O C terminal 102 249 1.2E-30 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 Pfam PF11967 Recombination protein O N terminal 17 93 2.0E-22 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 SUPERFAMILY SSF57863 95 248 5.75E-34 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger trd_0196 3dee87381af8f8247a4ba0a4b2ef1134 278 Gene3D G3DSA:1.20.1440.120 102 250 1.3E-25 T 13-10-2018 trd_0580 c22a0a22245f6cc121f5a87fd9355bba 264 Pfam PF04199 Putative cyclase 7 164 2.5E-36 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0580 c22a0a22245f6cc121f5a87fd9355bba 264 Gene3D G3DSA:3.50.30.50 1 264 5.4E-46 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0580 c22a0a22245f6cc121f5a87fd9355bba 264 SUPERFAMILY SSF102198 4 261 3.14E-53 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0484 9fa441f444eb6857fd7b02a7d1a96160 467 Gene3D G3DSA:3.40.50.1220 284 467 2.3E-84 T 13-10-2018 trd_0484 9fa441f444eb6857fd7b02a7d1a96160 467 SUPERFAMILY SSF52467 293 465 2.44E-71 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0484 9fa441f444eb6857fd7b02a7d1a96160 467 PIRSF PIRSF000204 5 466 1.9E-175 T 13-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 trd_0484 9fa441f444eb6857fd7b02a7d1a96160 467 Pfam PF02233 NAD(P) transhydrogenase beta subunit 11 462 9.0E-182 T 13-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 SUPERFAMILY SSF56784 1 213 2.1E-55 T 13-10-2018 IPR036412 HAD-like superfamily trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 Gene3D G3DSA:1.10.150.240 16 84 1.5E-56 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 8.9E-30 T 13-10-2018 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 62 182 3.3E-19 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 2.2E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.2E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 2.2E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 2.2E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1464 3aea38b6de6aad96d6d627158d660cdd 219 Gene3D G3DSA:3.40.50.1000 5 203 1.5E-56 T 13-10-2018 IPR023214 HAD superfamily trd_A0109 ae2377b94c08ed267f5d45684d698369 397 PIRSF PIRSF005572 16 395 9.9E-130 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 trd_A0109 ae2377b94c08ed267f5d45684d698369 397 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 208 227 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site trd_A0109 ae2377b94c08ed267f5d45684d698369 397 SUPERFAMILY SSF53383 12 390 1.02E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0109 ae2377b94c08ed267f5d45684d698369 397 Gene3D G3DSA:3.40.640.10 30 273 1.0E-148 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0109 ae2377b94c08ed267f5d45684d698369 397 Gene3D G3DSA:3.90.1150.10 19 385 1.0E-148 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0109 ae2377b94c08ed267f5d45684d698369 397 Pfam PF00266 Aminotransferase class-V 19 380 3.7E-87 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_1946 90207aef99c58b889506a0d6c407b4be 293 Gene3D G3DSA:2.120.10.30 5 284 9.8E-87 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_1946 90207aef99c58b889506a0d6c407b4be 293 SUPERFAMILY SSF63829 7 278 1.19E-59 T 13-10-2018 trd_1946 90207aef99c58b889506a0d6c407b4be 293 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 17 256 5.7E-71 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region trd_1946 90207aef99c58b889506a0d6c407b4be 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 196 213 1.6E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) trd_1946 90207aef99c58b889506a0d6c407b4be 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 94 115 1.6E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) trd_1946 90207aef99c58b889506a0d6c407b4be 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 156 176 1.6E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) trd_1946 90207aef99c58b889506a0d6c407b4be 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 18 35 1.6E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) trd_1946 90207aef99c58b889506a0d6c407b4be 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 133 155 1.6E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) trd_1946 90207aef99c58b889506a0d6c407b4be 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 238 256 1.6E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) trd_1001 5cb1bfac5c2baa7b77b3dbd5ffdd2bea 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.166 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 trd_1001 5cb1bfac5c2baa7b77b3dbd5ffdd2bea 185 SUPERFAMILY SSF55194 2 184 6.93E-69 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 trd_1001 5cb1bfac5c2baa7b77b3dbd5ffdd2bea 185 Gene3D G3DSA:3.30.1360.40 31 105 3.0E-68 T 13-10-2018 trd_1001 5cb1bfac5c2baa7b77b3dbd5ffdd2bea 185 Pfam PF01765 Ribosome recycling factor 20 183 3.6E-62 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 trd_1001 5cb1bfac5c2baa7b77b3dbd5ffdd2bea 185 Gene3D G3DSA:1.10.132.20 12 182 3.0E-68 T 13-10-2018 trd_1001 5cb1bfac5c2baa7b77b3dbd5ffdd2bea 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 2.9E-66 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 trd_1593 024d3dd90947b7831f37a1faf340db63 592 Gene3D G3DSA:3.90.550.10 2 238 9.7E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1593 024d3dd90947b7831f37a1faf340db63 592 Gene3D G3DSA:3.90.550.10 270 512 7.7E-53 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1593 024d3dd90947b7831f37a1faf340db63 592 SUPERFAMILY SSF53448 266 551 2.12E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1593 024d3dd90947b7831f37a1faf340db63 592 SUPERFAMILY SSF53448 8 147 5.28E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1593 024d3dd90947b7831f37a1faf340db63 592 Pfam PF00535 Glycosyl transferase family 2 277 463 2.3E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_1593 024d3dd90947b7831f37a1faf340db63 592 Pfam PF00535 Glycosyl transferase family 2 11 131 1.6E-15 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 SUPERFAMILY SSF58104 544 632 1.7E-5 T 13-10-2018 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 SMART SM00304 567 630 120.0 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 SMART SM00304 200 259 1.4E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 SUPERFAMILY SSF58104 231 367 8.37E-7 T 13-10-2018 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 SMART SM00283 330 605 1.8E-20 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 SUPERFAMILY SSF58104 338 573 4.97E-41 T 13-10-2018 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 Gene3D G3DSA:1.10.287.950 355 577 4.7E-39 T 13-10-2018 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 Gene3D G3DSA:1.10.287.950 202 354 2.8E-10 T 13-10-2018 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 391 558 1.8E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0217 f55f0c1b4d1639a9233578aa6b9b5c1b 657 Pfam PF00672 HAMP domain 206 255 2.6E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 PIRSF PIRSF005814 1 791 3.2E-235 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 419 435 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 SUPERFAMILY SSF160443 714 790 1.7E-11 T 13-10-2018 IPR036063 Smr domain superfamily trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 Pfam PF01713 Smr domain 717 790 8.3E-20 T 13-10-2018 IPR002625 Smr domain trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 Gene3D G3DSA:3.40.50.300 304 605 6.2E-80 T 13-10-2018 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 790 19.723 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 SUPERFAMILY SSF48334 36 287 1.7E-22 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 SMART SM00533 9 324 8.2E-16 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 Pfam PF00488 MutS domain V 340 521 4.3E-37 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 Gene3D G3DSA:3.30.1370.110 707 791 2.7E-25 T 13-10-2018 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 SMART SM00534 337 522 4.3E-80 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 SUPERFAMILY SSF52540 305 522 5.05E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 SMART SM00463 713 791 4.4E-19 T 13-10-2018 IPR002625 Smr domain trd_0668 2e1357951a96bae6ceaabdc0a131d255 792 TIGRFAM TIGR01069 mutS2: MutS2 family protein 1 791 2.7E-199 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 Gene3D G3DSA:1.10.1740.10 13 98 3.7E-31 T 13-10-2018 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 Pfam PF04539 Sigma-70 region 3 109 178 2.7E-8 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 PIRSF PIRSF000770 7 253 1.6E-45 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 Pfam PF04542 Sigma-70 region 2 28 97 3.0E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 SUPERFAMILY SSF88946 15 98 8.01E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 245 1.4E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 Pfam PF04545 Sigma-70, region 4 196 245 3.3E-16 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 Gene3D G3DSA:1.20.140.160 99 250 1.7E-37 T 13-10-2018 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 28 247 1.3E-72 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 SUPERFAMILY SSF88659 101 156 1.87E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 SUPERFAMILY SSF88659 162 251 6.17E-22 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 PRINTS PR00046 Major sigma-70 factor signature 55 68 2.7E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 PRINTS PR00046 Major sigma-70 factor signature 79 87 2.7E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 PRINTS PR00046 Major sigma-70 factor signature 200 212 2.7E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0041 80520a756d2dbd6717d4760bff1da02d 262 PRINTS PR00046 Major sigma-70 factor signature 217 232 2.7E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 Gene3D G3DSA:3.30.450.40 73 253 2.9E-59 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 SUPERFAMILY SSF46785 3 74 7.61E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 SUPERFAMILY SSF55781 59 248 2.88E-52 T 13-10-2018 trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 Pfam PF09339 IclR helix-turn-helix domain 4 53 2.7E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 Pfam PF01614 Bacterial transcriptional regulator 124 243 3.4E-36 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 Gene3D G3DSA:1.10.10.10 1 72 1.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1394 9c85a325efbb828e7288866c5b36ccd5 273 SMART SM00346 2 91 8.9E-19 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_1183 dffa949adca9e1f90f358fdcc4ee72ad 207 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 5 192 26.448 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 trd_1183 dffa949adca9e1f90f358fdcc4ee72ad 207 Gene3D G3DSA:3.40.50.170 1 207 3.4E-64 T 13-10-2018 trd_1183 dffa949adca9e1f90f358fdcc4ee72ad 207 Pfam PF00551 Formyl transferase 5 186 3.7E-40 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_1183 dffa949adca9e1f90f358fdcc4ee72ad 207 SUPERFAMILY SSF53328 4 201 9.16E-51 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_1183 dffa949adca9e1f90f358fdcc4ee72ad 207 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 trd_1183 dffa949adca9e1f90f358fdcc4ee72ad 207 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 5 196 5.7E-47 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 trd_A0314 79aa70b39e0189a87f87e7d2dae9e6f5 421 Pfam PF05977 Transmembrane secretion effector 27 409 5.9E-65 T 13-10-2018 IPR010290 Transmembrane secretion effector trd_A0314 79aa70b39e0189a87f87e7d2dae9e6f5 421 Gene3D G3DSA:1.20.1250.20 35 411 4.3E-38 T 13-10-2018 trd_A0314 79aa70b39e0189a87f87e7d2dae9e6f5 421 SUPERFAMILY SSF103473 34 418 1.44E-47 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1346 1b697ae54ff82ad11a32846d68901cc0 398 SUPERFAMILY SSF103473 10 383 2.35E-52 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1346 1b697ae54ff82ad11a32846d68901cc0 398 Gene3D G3DSA:1.20.1250.20 7 191 9.2E-26 T 13-10-2018 trd_1346 1b697ae54ff82ad11a32846d68901cc0 398 Gene3D G3DSA:1.20.1250.20 203 384 7.6E-15 T 13-10-2018 trd_1346 1b697ae54ff82ad11a32846d68901cc0 398 Pfam PF07690 Major Facilitator Superfamily 17 348 1.5E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 322 599 1.5E-104 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 375 397 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 Pfam PF01040 UbiA prenyltransferase family 336 582 2.8E-69 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 320 601 21.049 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 Gene3D G3DSA:1.10.357.140 327 490 3.7E-21 T 13-10-2018 trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 Pfam PF02628 Cytochrome oxidase assembly protein 60 288 4.9E-35 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 trd_A0395 6da07bda0c284e4d20dc57ac58f38236 603 Pfam PF02628 Cytochrome oxidase assembly protein 13 54 2.2E-7 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:2.40.50.140 285 348 5.0E-22 T 13-10-2018 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 SMART SM00382 28 211 5.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1135 59529cb5ed6d9694df3c47798f35d868 364 SUPERFAMILY SSF50331 236 363 1.34E-25 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal trd_1135 59529cb5ed6d9694df3c47798f35d868 364 Pfam PF08402 TOBE domain 282 355 3.0E-7 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:3.40.50.300 1 238 7.6E-76 T 13-10-2018 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 Pfam PF00005 ABC transporter 20 161 3.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:2.40.50.100 239 360 5.0E-22 T 13-10-2018 trd_1135 59529cb5ed6d9694df3c47798f35d868 364 SUPERFAMILY SSF52540 5 242 9.64E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0378 8d84129676fc6afbbd9d4ad905a37ca8 104 PIRSF PIRSF036548 9 104 4.3E-33 T 13-10-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 trd_A0378 8d84129676fc6afbbd9d4ad905a37ca8 104 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 19 101 5.1E-8 T 13-10-2018 trd_A0378 8d84129676fc6afbbd9d4ad905a37ca8 104 SUPERFAMILY SSF54862 32 103 6.8E-15 T 13-10-2018 trd_A0378 8d84129676fc6afbbd9d4ad905a37ca8 104 Gene3D G3DSA:3.30.70.20 14 99 7.4E-13 T 13-10-2018 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 ProSitePatterns PS00480 Citrate synthase signature. 252 264 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 Pfam PF00285 Citrate synthase, C-terminal domain 5 352 1.9E-121 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PIRSF PIRSF001369 1 370 3.1E-132 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 4 369 3.2E-144 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 Gene3D G3DSA:1.10.580.10 24 349 3.5E-122 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 SUPERFAMILY SSF48256 3 369 8.37E-122 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PRINTS PR00143 Citrate synthase signature 120 133 2.2E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PRINTS PR00143 Citrate synthase signature 302 318 2.2E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PRINTS PR00143 Citrate synthase signature 322 336 2.2E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PRINTS PR00143 Citrate synthase signature 192 220 2.2E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PRINTS PR00143 Citrate synthase signature 245 265 2.2E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 PRINTS PR00143 Citrate synthase signature 170 185 2.2E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 trd_A0503 be5af8ab6c0eda889f1dc16462c52ca2 370 Gene3D G3DSA:1.10.230.10 218 316 3.5E-122 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain trd_0535 83406aa6e6661f19ef234b016dc5ffea 82 Pfam PF12728 Helix-turn-helix domain 9 58 1.3E-13 T 13-10-2018 trd_0535 83406aa6e6661f19ef234b016dc5ffea 82 SUPERFAMILY SSF46955 9 61 5.95E-11 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_0535 83406aa6e6661f19ef234b016dc5ffea 82 Gene3D G3DSA:1.10.1660.10 6 70 5.2E-8 T 13-10-2018 trd_0535 83406aa6e6661f19ef234b016dc5ffea 82 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 9 57 6.8E-10 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 Pfam PF03880 DbpA RNA binding domain 458 528 1.2E-25 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 SUPERFAMILY SSF52540 80 366 2.53E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 Gene3D G3DSA:3.30.70.330 457 531 1.6E-19 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 Gene3D G3DSA:3.40.50.300 220 416 1.0E-54 T 13-10-2018 trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 159 167 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 Gene3D G3DSA:3.40.50.300 3 216 5.0E-78 T 13-10-2018 trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 Pfam PF00271 Helicase conserved C-terminal domain 237 345 2.2E-31 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 SMART SM00490 264 345 1.7E-38 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 SMART SM00487 31 223 3.5E-63 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_1131 911a4ea8fadb76b9447b381c59b1bc12 534 Pfam PF00270 DEAD/DEAH box helicase 37 199 6.1E-50 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_0218 999fb27a5db45657f301a455d0d8c441 312 Gene3D G3DSA:3.40.50.150 60 302 1.7E-73 T 13-10-2018 trd_0218 999fb27a5db45657f301a455d0d8c441 312 SUPERFAMILY SSF53335 2 287 1.04E-82 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0218 999fb27a5db45657f301a455d0d8c441 312 Pfam PF17284 Spermidine synthase tetramerisation domain 7 59 2.7E-13 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 trd_0218 999fb27a5db45657f301a455d0d8c441 312 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 287 35.98 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 trd_0218 999fb27a5db45657f301a455d0d8c441 312 TIGRFAM TIGR00417 speE: spermidine synthase 16 281 2.1E-79 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 trd_0218 999fb27a5db45657f301a455d0d8c441 312 Gene3D G3DSA:2.30.140.10 2 59 4.4E-13 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 trd_0218 999fb27a5db45657f301a455d0d8c441 312 Pfam PF01564 Spermine/spermidine synthase domain 62 240 5.1E-48 T 13-10-2018 trd_A0855 3021061d79302490b3601fa0ad56a008 574 SUPERFAMILY SSF50952 279 565 1.1E-13 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 SMART SM00938 4 105 2.1E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 23 41 4.4E-25 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 52 75 4.4E-25 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 83 103 4.4E-25 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 2 17 4.4E-25 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 SUPERFAMILY SSF54913 1 112 4.77E-37 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 Gene3D G3DSA:3.30.70.120 1 116 1.2E-42 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal trd_1106 57a9d5f0b2da0b8beacd59a743145b2b 116 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 6.5E-34 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 SUPERFAMILY SSF54713 68 188 1.26E-38 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 ProSitePatterns PS01126 Elongation factor Ts signature 1. 22 37 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 Gene3D G3DSA:1.10.8.10 11 66 2.2E-23 T 13-10-2018 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 ProSitePatterns PS01127 Elongation factor Ts signature 2. 87 97 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 SUPERFAMILY SSF46934 13 66 3.23E-17 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 Gene3D G3DSA:3.30.479.20 68 191 6.9E-39 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 Hamap MF_00050 Elongation factor Ts [tsf]. 1 192 31.44 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 Pfam PF00889 Elongation factor TS 65 132 2.2E-13 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 trd_0999 ea6c4625b2b03bbf4fc49defd0f86956 192 Pfam PF00889 Elongation factor TS 138 188 2.6E-9 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 Pfam PF08402 TOBE domain 277 346 3.2E-6 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 Pfam PF00005 ABC transporter 26 169 1.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 SUPERFAMILY SSF52540 7 249 6.88E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 SUPERFAMILY SSF50331 260 346 6.8E-8 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 SMART SM00382 33 218 1.1E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0532 706d2086d35eb91a3aa54290dd162fbf 383 Gene3D G3DSA:3.40.50.300 6 251 7.5E-75 T 13-10-2018 trd_1778 f6f36d8ebbdbfb0fa9189d0fcc05d1c2 405 Pfam PF13439 Glycosyltransferase Family 4 21 191 3.8E-32 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_1778 f6f36d8ebbdbfb0fa9189d0fcc05d1c2 405 TIGRFAM TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family 8 405 3.5E-164 T 13-10-2018 IPR011875 Alpha-maltose-1-phosphate synthase GO:0009250|GO:0016740 KEGG: 00500+2.4.1.342|MetaCyc: PWY-7900 trd_1778 f6f36d8ebbdbfb0fa9189d0fcc05d1c2 405 Gene3D G3DSA:3.40.50.2000 12 401 2.3E-90 T 13-10-2018 trd_1778 f6f36d8ebbdbfb0fa9189d0fcc05d1c2 405 SUPERFAMILY SSF53756 10 404 6.28E-93 T 13-10-2018 trd_1778 f6f36d8ebbdbfb0fa9189d0fcc05d1c2 405 Pfam PF00534 Glycosyl transferases group 1 209 383 2.1E-34 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_1778 f6f36d8ebbdbfb0fa9189d0fcc05d1c2 405 Gene3D G3DSA:3.40.50.2000 188 384 2.3E-90 T 13-10-2018 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 Gene3D G3DSA:1.10.8.870 423 555 2.2E-29 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 Pfam PF01266 FAD dependent oxidoreductase 18 359 3.9E-45 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 SUPERFAMILY SSF51905 15 312 2.59E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 413 536 1.0E-26 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 Gene3D G3DSA:3.50.50.60 18 399 1.7E-120 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 SUPERFAMILY SSF54373 258 355 1.1E-6 T 13-10-2018 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 22 39 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 46 58 2.3E-27 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 29 2.3E-27 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 349 355 2.3E-27 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 380 392 2.3E-27 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 91 103 2.3E-27 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 30 40 2.3E-27 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 trd_A0356 539b322a15d3d18dc78d295ce72da4a6 572 Gene3D G3DSA:3.30.9.10 95 356 1.7E-120 T 13-10-2018 trd_1900 5cd7309b4b022b7ab17f54aafb94a513 166 Gene3D G3DSA:3.40.50.2020 20 135 4.4E-12 T 13-10-2018 trd_1900 5cd7309b4b022b7ab17f54aafb94a513 166 SUPERFAMILY SSF53271 14 129 4.33E-15 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_1900 5cd7309b4b022b7ab17f54aafb94a513 166 Pfam PF00156 Phosphoribosyl transferase domain 39 135 3.5E-9 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_1727 9e58a70da991bd83d0f496caa037ef83 132 Pfam PF04232 Stage V sporulation protein S (SpoVS) 48 130 2.4E-35 T 13-10-2018 IPR007347 Sporulation stage V, protein S trd_1727 9e58a70da991bd83d0f496caa037ef83 132 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 49 132 1.0E-15 T 13-10-2018 IPR007347 Sporulation stage V, protein S trd_1727 9e58a70da991bd83d0f496caa037ef83 132 Gene3D G3DSA:3.30.110.20 47 132 1.4E-31 T 13-10-2018 IPR036882 Alba-like domain superfamily GO:0003676 trd_A0612 6f034e70433c7961499f0744fd5cb0fc 252 Gene3D G3DSA:1.10.10.1320 16 69 1.7E-10 T 13-10-2018 trd_A0612 6f034e70433c7961499f0744fd5cb0fc 252 Pfam PF10099 Anti-sigma-K factor rskA 45 247 2.0E-21 T 13-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 trd_A0612 6f034e70433c7961499f0744fd5cb0fc 252 Pfam PF13490 Putative zinc-finger 14 43 3.8E-8 T 13-10-2018 IPR027383 Putative zinc-finger trd_1838 efc1bb3217a1e2f2ec1dabe136b8047e 486 Gene3D G3DSA:3.40.720.10 366 450 8.5E-8 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 trd_1838 efc1bb3217a1e2f2ec1dabe136b8047e 486 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 6 268 4.5E-34 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 trd_1838 efc1bb3217a1e2f2ec1dabe136b8047e 486 SUPERFAMILY SSF53649 4 423 1.16E-43 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 trd_1838 efc1bb3217a1e2f2ec1dabe136b8047e 486 Gene3D G3DSA:3.40.720.10 1 275 4.8E-41 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 trd_0402 16187c1a76a710be090b3745f6267eb1 68 Pfam PF02597 ThiS family 5 68 3.5E-14 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 trd_0402 16187c1a76a710be090b3745f6267eb1 68 Gene3D G3DSA:3.10.20.30 5 68 2.3E-22 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_0402 16187c1a76a710be090b3745f6267eb1 68 SUPERFAMILY SSF54285 4 67 2.62E-19 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp trd_0402 16187c1a76a710be090b3745f6267eb1 68 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 5 68 7.7E-24 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis trd_1084 510dc6a044a6832d3a69c9e01055050b 228 Pfam PF01424 R3H domain 167 226 7.1E-14 T 13-10-2018 IPR001374 R3H domain GO:0003676 trd_1084 510dc6a044a6832d3a69c9e01055050b 228 Gene3D G3DSA:3.30.30.80 4 41 7.7E-7 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily trd_1084 510dc6a044a6832d3a69c9e01055050b 228 SMART SM01245 9 55 3.7E-9 T 13-10-2018 IPR032782 Jag, N-terminal trd_1084 510dc6a044a6832d3a69c9e01055050b 228 SMART SM00393 148 227 1.3E-19 T 13-10-2018 IPR001374 R3H domain GO:0003676 trd_1084 510dc6a044a6832d3a69c9e01055050b 228 SUPERFAMILY SSF82708 176 227 2.39E-8 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 trd_1084 510dc6a044a6832d3a69c9e01055050b 228 Gene3D G3DSA:3.30.300.20 71 162 2.0E-20 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_1084 510dc6a044a6832d3a69c9e01055050b 228 Pfam PF14804 Jag N-terminus 11 38 2.3E-7 T 13-10-2018 IPR032782 Jag, N-terminal trd_1084 510dc6a044a6832d3a69c9e01055050b 228 Gene3D G3DSA:3.30.1370.50 163 228 5.7E-25 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 trd_1789 4529de66a7d299038109cb808c7414cc 495 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 12 483 3.2E-125 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 trd_1789 4529de66a7d299038109cb808c7414cc 495 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 484 17.877 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 trd_1789 4529de66a7d299038109cb808c7414cc 495 Pfam PF00361 Proton-conducting membrane transporter 131 432 8.7E-72 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1318 d6b55c03a0a938c6afd4e75a6a14332f 214 Pfam PF04199 Putative cyclase 7 154 2.2E-33 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_1318 d6b55c03a0a938c6afd4e75a6a14332f 214 Gene3D G3DSA:3.50.30.50 2 213 8.7E-65 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_1318 d6b55c03a0a938c6afd4e75a6a14332f 214 SUPERFAMILY SSF102198 3 212 3.01E-58 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_A0488 bc2556e84904fff2d008dc1924b67310 247 SUPERFAMILY SSF88946 75 156 5.49E-18 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0488 bc2556e84904fff2d008dc1924b67310 247 SUPERFAMILY SSF88659 170 232 2.06E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0488 bc2556e84904fff2d008dc1924b67310 247 Gene3D G3DSA:1.10.1740.10 71 149 1.3E-14 T 13-10-2018 trd_A0488 bc2556e84904fff2d008dc1924b67310 247 Pfam PF04545 Sigma-70, region 4 180 229 1.3E-11 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 trd_A0488 bc2556e84904fff2d008dc1924b67310 247 Gene3D G3DSA:1.10.10.10 159 235 5.7E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0488 bc2556e84904fff2d008dc1924b67310 247 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 80 231 2.5E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_A0488 bc2556e84904fff2d008dc1924b67310 247 Pfam PF04542 Sigma-70 region 2 83 149 9.1E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_0931 44983909b7a4d014dd4030652a001b00 309 Gene3D G3DSA:2.120.10.30 99 300 1.9E-47 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_0931 44983909b7a4d014dd4030652a001b00 309 Gene3D G3DSA:2.120.10.30 13 98 3.8E-12 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_0931 44983909b7a4d014dd4030652a001b00 309 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 161 264 5.1E-8 T 13-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 trd_0931 44983909b7a4d014dd4030652a001b00 309 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 36 123 2.2E-7 T 13-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 trd_0931 44983909b7a4d014dd4030652a001b00 309 SUPERFAMILY SSF82171 15 278 1.45E-42 T 13-10-2018 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 Pfam PF00398 Ribosomal RNA adenine dimethylase 39 290 2.7E-55 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 Gene3D G3DSA:3.40.50.150 17 223 2.1E-65 T 13-10-2018 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 68 95 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 SMART SM00650 52 220 2.3E-73 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 Gene3D G3DSA:1.10.8.100 229 295 7.0E-23 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 36 289 2.3E-76 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 36 292 50.058 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 trd_1306 e133eb9314d4c541d1fc34538c01dbf5 297 SUPERFAMILY SSF53335 35 293 2.5E-69 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_A0644 92745991ae48af8e5320dd8e28b544d4 467 Gene3D G3DSA:3.30.750.140 311 419 5.5E-15 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily trd_A0644 92745991ae48af8e5320dd8e28b544d4 467 Pfam PF02120 Flagellar hook-length control protein FliK 325 401 7.7E-18 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal trd_0478 ea2c2798613658de7abc758165b46222 237 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 221 5.8E-61 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 trd_0478 ea2c2798613658de7abc758165b46222 237 SUPERFAMILY SSF100950 5 149 6.51E-42 T 13-10-2018 IPR037171 NagB/RpiA transferase-like trd_0478 ea2c2798613658de7abc758165b46222 237 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 222 2.2E-73 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 trd_0478 ea2c2798613658de7abc758165b46222 237 Gene3D G3DSA:3.40.50.1360 7 221 2.1E-76 T 13-10-2018 trd_0478 ea2c2798613658de7abc758165b46222 237 SUPERFAMILY SSF75445 132 208 1.83E-23 T 13-10-2018 trd_0478 ea2c2798613658de7abc758165b46222 237 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 225 33.602 T 13-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 trd_0478 ea2c2798613658de7abc758165b46222 237 Gene3D G3DSA:3.30.70.260 128 205 2.1E-76 T 13-10-2018 trd_0371 5d5b8203c09ce62856bb04c3e77829cd 530 Gene3D G3DSA:3.40.50.2000 53 511 9.9E-171 T 13-10-2018 trd_0371 5d5b8203c09ce62856bb04c3e77829cd 530 Gene3D G3DSA:3.40.50.2000 293 499 9.9E-171 T 13-10-2018 trd_0371 5d5b8203c09ce62856bb04c3e77829cd 530 Pfam PF00982 Glycosyltransferase family 20 31 515 2.4E-106 T 13-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 trd_0371 5d5b8203c09ce62856bb04c3e77829cd 530 SUPERFAMILY SSF53756 30 517 1.15E-102 T 13-10-2018 trd_1544 3ea20788ff4584fec6298ef8dbdf7308 339 Gene3D G3DSA:3.40.1190.20 10 323 1.0E-83 T 13-10-2018 IPR029056 Ribokinase-like trd_1544 3ea20788ff4584fec6298ef8dbdf7308 339 Pfam PF00294 pfkB family carbohydrate kinase 22 316 4.2E-34 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_1544 3ea20788ff4584fec6298ef8dbdf7308 339 SUPERFAMILY SSF53613 17 326 7.17E-45 T 13-10-2018 IPR029056 Ribokinase-like trd_1615 c11632310994bb653b7d34bbe4029449 217 SMART SM00072 23 207 7.4E-58 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit trd_1615 c11632310994bb653b7d34bbe4029449 217 Gene3D G3DSA:3.40.50.300 28 203 3.2E-61 T 13-10-2018 trd_1615 c11632310994bb653b7d34bbe4029449 217 Gene3D G3DSA:3.30.63.10 55 114 3.2E-61 T 13-10-2018 trd_1615 c11632310994bb653b7d34bbe4029449 217 ProSitePatterns PS00856 Guanylate kinase-like signature. 58 75 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 trd_1615 c11632310994bb653b7d34bbe4029449 217 Hamap MF_00328 Guanylate kinase [gmk]. 22 207 31.714 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 trd_1615 c11632310994bb653b7d34bbe4029449 217 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 25 203 2.1E-61 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 trd_1615 c11632310994bb653b7d34bbe4029449 217 SUPERFAMILY SSF52540 23 211 7.54E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1615 c11632310994bb653b7d34bbe4029449 217 Pfam PF00625 Guanylate kinase 24 204 5.9E-43 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit trd_A0305 ebdd12cbffb73628941518ce6848942f 307 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 17 305 23.219 T 13-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 trd_A0305 ebdd12cbffb73628941518ce6848942f 307 Pfam PF01040 UbiA prenyltransferase family 35 270 4.2E-44 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 trd_A0305 ebdd12cbffb73628941518ce6848942f 307 PIRSF PIRSF005355 10 307 7.4E-91 T 13-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 trd_A0305 ebdd12cbffb73628941518ce6848942f 307 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 26 304 8.8E-71 T 13-10-2018 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 SUPERFAMILY SSF55874 216 341 1.96E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 Pfam PF07730 Histidine kinase 148 212 1.3E-12 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 252 342 3.8E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 SUPERFAMILY SSF158472 79 129 8.89E-5 T 13-10-2018 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 321 2.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 300 2.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 340 2.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 SMART SM00387 250 343 1.0E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 Pfam PF00672 HAMP domain 80 128 3.3E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 PIRSF PIRSF037434 111 348 1.6E-49 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 PIRSF PIRSF037434 11 101 15.0 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 Gene3D G3DSA:1.10.287.130 75 210 2.5E-7 T 13-10-2018 trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 Gene3D G3DSA:3.30.565.10 211 347 1.4E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1817 c818aed9c8f1b7e519946bfb58ad370d 355 SMART SM00304 78 132 2.3E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 trd_1834 5d166885865cd5f135b6244f012b5c50 124 SUPERFAMILY SSF52172 7 117 3.95E-10 T 13-10-2018 IPR011006 CheY-like superfamily trd_1834 5d166885865cd5f135b6244f012b5c50 124 Gene3D G3DSA:3.40.50.2300 6 120 4.6E-7 T 13-10-2018 trd_0363 2af96ce91250915d52573585164d01ee 536 SUPERFAMILY SSF52518 360 532 1.72E-55 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0363 2af96ce91250915d52573585164d01ee 536 Gene3D G3DSA:3.40.50.970 363 534 1.4E-55 T 13-10-2018 trd_0363 2af96ce91250915d52573585164d01ee 536 Gene3D G3DSA:3.40.50.970 1 176 5.3E-62 T 13-10-2018 trd_0363 2af96ce91250915d52573585164d01ee 536 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 326 4.9E-34 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_0363 2af96ce91250915d52573585164d01ee 536 SUPERFAMILY SSF52467 157 341 3.64E-37 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0363 2af96ce91250915d52573585164d01ee 536 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 384 528 4.4E-39 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_0363 2af96ce91250915d52573585164d01ee 536 Gene3D G3DSA:3.40.50.1220 188 362 3.9E-44 T 13-10-2018 trd_0363 2af96ce91250915d52573585164d01ee 536 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 418 437 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_0363 2af96ce91250915d52573585164d01ee 536 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 169 2.6E-56 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_0363 2af96ce91250915d52573585164d01ee 536 SUPERFAMILY SSF52518 1 175 1.18E-53 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1547 7e22720c586b4fd236f90f00c2c63c7e 368 Gene3D G3DSA:3.40.800.20 2 367 5.1E-128 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_1547 7e22720c586b4fd236f90f00c2c63c7e 368 SUPERFAMILY SSF52768 1 342 3.26E-111 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily trd_1547 7e22720c586b4fd236f90f00c2c63c7e 368 Pfam PF00850 Histone deacetylase domain 37 321 1.1E-82 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_1547 7e22720c586b4fd236f90f00c2c63c7e 368 PRINTS PR01270 Histone deacetylase superfamily signature 135 158 8.1E-16 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_1547 7e22720c586b4fd236f90f00c2c63c7e 368 PRINTS PR01270 Histone deacetylase superfamily signature 168 183 8.1E-16 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_1547 7e22720c586b4fd236f90f00c2c63c7e 368 PRINTS PR01270 Histone deacetylase superfamily signature 253 263 8.1E-16 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_0757 5175de6c60d1d0eca53638cb1f4a6642 556 SUPERFAMILY SSF56112 99 430 5.0E-28 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_0757 5175de6c60d1d0eca53638cb1f4a6642 556 Pfam PF03109 ABC1 family 116 233 5.9E-33 T 13-10-2018 IPR004147 UbiB domain trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 4 270 1.9E-75 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 3 220 36.284 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 PIRSF PIRSF005917 1 275 9.3E-100 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 Gene3D G3DSA:3.30.950.10 110 225 8.4E-39 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 201 4.1E-35 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 80 91 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 Gene3D G3DSA:3.40.1010.10 1 109 3.4E-42 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 trd_1760 b37bfa81fd4cae662a99299fd35217c4 294 SUPERFAMILY SSF53790 1 218 1.96E-79 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 trd_1743 5ca479f8cf17d2000e42726ae6a0d9ca 351 Gene3D G3DSA:1.10.10.2120 25 100 2.3E-65 T 13-10-2018 trd_1743 5ca479f8cf17d2000e42726ae6a0d9ca 351 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 120 337 6.3E-20 T 13-10-2018 IPR005079 Peptidase C45 trd_1743 5ca479f8cf17d2000e42726ae6a0d9ca 351 Gene3D G3DSA:3.60.60.10 10 341 2.3E-65 T 13-10-2018 trd_0391 52a9b737edcd382e561c28225b8ee7dc 398 SUPERFAMILY SSF53383 7 389 5.73E-95 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0391 52a9b737edcd382e561c28225b8ee7dc 398 Gene3D G3DSA:3.40.640.10 32 295 3.8E-117 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0391 52a9b737edcd382e561c28225b8ee7dc 398 Pfam PF00266 Aminotransferase class-V 30 380 1.6E-62 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_0391 52a9b737edcd382e561c28225b8ee7dc 398 Gene3D G3DSA:3.90.1150.10 17 381 3.8E-117 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1123 ca20f175ae3376a47b595992d69ea268 430 Gene3D G3DSA:3.40.640.10 71 319 4.6E-176 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1123 ca20f175ae3376a47b595992d69ea268 430 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 8 426 7.5E-184 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 trd_1123 ca20f175ae3376a47b595992d69ea268 430 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 427 102.527 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 trd_1123 ca20f175ae3376a47b595992d69ea268 430 SUPERFAMILY SSF53383 3 426 7.91E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1123 ca20f175ae3376a47b595992d69ea268 430 Pfam PF00202 Aminotransferase class-III 33 423 2.5E-78 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1123 ca20f175ae3376a47b595992d69ea268 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1123 ca20f175ae3376a47b595992d69ea268 430 Gene3D G3DSA:3.90.1150.10 9 419 4.6E-176 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 SMART SM00490 581 678 0.0045 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 Pfam PF00270 DEAD/DEAH box helicase 270 433 1.0E-14 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 Gene3D G3DSA:3.40.50.300 260 452 6.9E-66 T 13-10-2018 trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 SMART SM00487 265 460 4.4E-26 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 Pfam PF00271 Helicase conserved C-terminal domain 608 676 4.3E-6 T 13-10-2018 IPR001650 Helicase, C-terminal trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 Gene3D G3DSA:1.10.8.630 7 115 5.4E-13 T 13-10-2018 trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 Hamap MF_00983 Probable primosomal protein N' [priA]. 12 811 22.868 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 SUPERFAMILY SSF52540 290 726 1.52E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 TIGRFAM TIGR00595 priA: primosomal protein N' 293 794 1.3E-169 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 trd_1613 0d0a8eb9f456df362cc6fbb7e7161125 812 SUPERFAMILY SSF52540 220 432 3.37E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 Pfam PF00005 ABC transporter 46 196 5.7E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 Gene3D G3DSA:3.40.50.300 20 283 4.0E-54 T 13-10-2018 trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 Gene3D G3DSA:3.40.50.300 346 586 5.6E-67 T 13-10-2018 trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 Pfam PF00005 ABC transporter 365 511 4.4E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 Pfam PF02361 Cobalt transport protein 650 853 2.2E-22 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 SUPERFAMILY SSF52540 342 578 2.61E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 SUPERFAMILY SSF52540 41 263 6.73E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 SMART SM00382 374 559 1.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0089 31ac735aa9eaedecce13c6870a0cf83e 903 SMART SM00382 55 255 4.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1695 ba759598dbf2714b8a148fe0f306fbe6 557 Gene3D G3DSA:3.20.20.80 65 340 3.3E-84 T 13-10-2018 trd_1695 ba759598dbf2714b8a148fe0f306fbe6 557 Gene3D G3DSA:3.10.50.10 250 306 3.3E-84 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily trd_1695 ba759598dbf2714b8a148fe0f306fbe6 557 Pfam PF00704 Glycosyl hydrolases family 18 58 333 6.2E-32 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 trd_1695 ba759598dbf2714b8a148fe0f306fbe6 557 SUPERFAMILY SSF51445 40 341 5.38E-49 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1695 ba759598dbf2714b8a148fe0f306fbe6 557 SMART SM00636 39 335 2.0E-25 T 13-10-2018 IPR011583 Chitinase II GO:0008061 trd_0283 257be94ac4bee47cabfac3cb19457ef9 282 Gene3D G3DSA:3.60.15.10 2 282 4.5E-71 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0283 257be94ac4bee47cabfac3cb19457ef9 282 SMART SM00849 55 260 1.8E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0283 257be94ac4bee47cabfac3cb19457ef9 282 Pfam PF00753 Metallo-beta-lactamase superfamily 56 260 2.8E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0283 257be94ac4bee47cabfac3cb19457ef9 282 SUPERFAMILY SSF56281 52 270 2.88E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0350 ee081be04445a85062a609f1415ee496 389 SUPERFAMILY SSF53137 156 235 7.41E-15 T 13-10-2018 trd_0350 ee081be04445a85062a609f1415ee496 389 Pfam PF03465 eRF1 domain 3 274 383 1.7E-7 T 13-10-2018 IPR005142 eRF1 domain 3 trd_0350 ee081be04445a85062a609f1415ee496 389 SUPERFAMILY SSF55315 263 383 9.42E-11 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like trd_0350 ee081be04445a85062a609f1415ee496 389 Pfam PF03464 eRF1 domain 2 154 225 8.5E-9 T 13-10-2018 IPR005141 eRF1 domain 2 trd_0350 ee081be04445a85062a609f1415ee496 389 Gene3D G3DSA:3.30.420.60 134 255 1.1E-17 T 13-10-2018 trd_0772 9417fcb76c70f8538a1486ba740cddc4 129 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 4 108 27.278 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 trd_0772 9417fcb76c70f8538a1486ba740cddc4 129 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 113 2.1E-33 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 trd_0772 9417fcb76c70f8538a1486ba740cddc4 129 SUPERFAMILY SSF89919 1 111 2.09E-36 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily trd_0772 9417fcb76c70f8538a1486ba740cddc4 129 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 8 95 2.0E-16 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 trd_0772 9417fcb76c70f8538a1486ba740cddc4 129 Pfam PF02033 Ribosome-binding factor A 5 108 1.4E-32 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 trd_0772 9417fcb76c70f8538a1486ba740cddc4 129 Gene3D G3DSA:3.30.300.20 1 117 1.1E-39 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_A0132 1d33772c65b08dcb2491732f289cb265 196 Pfam PF04542 Sigma-70 region 2 24 91 2.1E-20 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0132 1d33772c65b08dcb2491732f289cb265 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 175 1.4E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_A0132 1d33772c65b08dcb2491732f289cb265 196 Gene3D G3DSA:1.10.10.10 85 180 6.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0132 1d33772c65b08dcb2491732f289cb265 196 Gene3D G3DSA:1.10.1740.10 6 84 3.6E-28 T 13-10-2018 trd_A0132 1d33772c65b08dcb2491732f289cb265 196 SUPERFAMILY SSF88659 116 179 1.77E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0132 1d33772c65b08dcb2491732f289cb265 196 SUPERFAMILY SSF88946 3 107 5.49E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0132 1d33772c65b08dcb2491732f289cb265 196 Pfam PF08281 Sigma-70, region 4 122 174 2.2E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1565 b375090c88336aebcc4f4509289dd99f 372 Pfam PF06723 MreB/Mbl protein 41 364 1.9E-137 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1565 b375090c88336aebcc4f4509289dd99f 372 Gene3D G3DSA:3.90.640.10 216 289 3.2E-126 T 13-10-2018 trd_1565 b375090c88336aebcc4f4509289dd99f 372 SUPERFAMILY SSF53067 180 362 5.64E-49 T 13-10-2018 trd_1565 b375090c88336aebcc4f4509289dd99f 372 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 162 181 2.1E-36 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1565 b375090c88336aebcc4f4509289dd99f 372 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 330 356 2.1E-36 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1565 b375090c88336aebcc4f4509289dd99f 372 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 217 237 2.1E-36 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1565 b375090c88336aebcc4f4509289dd99f 372 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 78 96 2.1E-36 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1565 b375090c88336aebcc4f4509289dd99f 372 SUPERFAMILY SSF53067 41 176 7.56E-39 T 13-10-2018 trd_1565 b375090c88336aebcc4f4509289dd99f 372 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 40 365 2.4E-140 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 trd_1565 b375090c88336aebcc4f4509289dd99f 372 Gene3D G3DSA:3.30.420.40 184 347 3.2E-126 T 13-10-2018 trd_1565 b375090c88336aebcc4f4509289dd99f 372 Gene3D G3DSA:3.30.420.40 43 356 3.2E-126 T 13-10-2018 trd_0716 6731717140db490b8a94b9db36f69996 353 Pfam PF02547 Queuosine biosynthesis protein 10 352 5.5E-135 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 trd_0716 6731717140db490b8a94b9db36f69996 353 SUPERFAMILY SSF111337 8 353 4.84E-131 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 trd_0716 6731717140db490b8a94b9db36f69996 353 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 8 353 4.8E-121 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 trd_0716 6731717140db490b8a94b9db36f69996 353 Gene3D G3DSA:2.40.10.240 70 172 3.2E-122 T 13-10-2018 trd_0716 6731717140db490b8a94b9db36f69996 353 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 7 353 46.467 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 trd_0716 6731717140db490b8a94b9db36f69996 353 Gene3D G3DSA:3.40.1780.10 20 352 3.2E-122 T 13-10-2018 trd_A0045 aa25c7bd1cac5566a4bce71aa15ac0c8 259 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 8 133 7.2E-29 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G trd_A0045 aa25c7bd1cac5566a4bce71aa15ac0c8 259 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 240 9.9E-26 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G trd_A0045 aa25c7bd1cac5566a4bce71aa15ac0c8 259 SUPERFAMILY SSF117143 88 219 1.57E-19 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like trd_A0045 aa25c7bd1cac5566a4bce71aa15ac0c8 259 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 180 256 2.8E-16 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain trd_A0045 aa25c7bd1cac5566a4bce71aa15ac0c8 259 Pfam PF00460 Flagella basal body rod protein 8 35 7.6E-8 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 trd_0942 2d66c07bfa39aed0cd854132d90fb640 123 SUPERFAMILY SSF81301 12 119 4.9E-33 T 13-10-2018 trd_0942 2d66c07bfa39aed0cd854132d90fb640 123 Gene3D G3DSA:3.30.460.10 8 117 1.1E-34 T 13-10-2018 trd_0942 2d66c07bfa39aed0cd854132d90fb640 123 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 16 113 4.1E-29 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS trd_0942 2d66c07bfa39aed0cd854132d90fb640 123 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 12 114 22.529 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS trd_0942 2d66c07bfa39aed0cd854132d90fb640 123 Pfam PF02410 Ribosomal silencing factor during starvation 20 113 1.6E-23 T 13-10-2018 trd_1248 24cc7694fbb70e7e8d442e19e9d5c486 151 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 112 1.9E-39 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 trd_1248 24cc7694fbb70e7e8d442e19e9d5c486 151 SUPERFAMILY SSF50249 3 151 4.11E-44 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1248 24cc7694fbb70e7e8d442e19e9d5c486 151 Pfam PF00436 Single-strand binding protein family 5 107 8.1E-35 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 trd_1248 24cc7694fbb70e7e8d442e19e9d5c486 151 Gene3D G3DSA:2.40.50.140 1 123 1.2E-39 T 13-10-2018 trd_1248 24cc7694fbb70e7e8d442e19e9d5c486 151 Hamap MF_00984 Single-stranded DNA-binding protein. 5 113 31.792 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 trd_1426 cc7e7d523345a9c4c4edf8223ad39f66 107 Pfam PF00829 Ribosomal prokaryotic L21 protein 2 101 2.5E-38 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1426 cc7e7d523345a9c4c4edf8223ad39f66 107 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 4.7E-33 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1426 cc7e7d523345a9c4c4edf8223ad39f66 107 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.026 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1426 cc7e7d523345a9c4c4edf8223ad39f66 107 SUPERFAMILY SSF141091 2 102 5.1E-36 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1426 cc7e7d523345a9c4c4edf8223ad39f66 107 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 SUPERFAMILY SSF53474 8 283 2.14E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00412 Epoxide hydrolase signature 258 280 5.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00412 Epoxide hydrolase signature 102 115 5.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00412 Epoxide hydrolase signature 221 237 5.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00412 Epoxide hydrolase signature 33 51 5.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00412 Epoxide hydrolase signature 116 129 5.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 Gene3D G3DSA:3.40.50.1820 2 290 1.7E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 1.6E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.6E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 223 237 1.6E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.6E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0550 bb1c618d755de57473b13cde8228d5b7 292 Pfam PF12697 Alpha/beta hydrolase family 29 275 1.3E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 SUPERFAMILY SSF52518 8 213 1.67E-62 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 Gene3D G3DSA:3.40.50.920 202 334 5.4E-45 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 SUPERFAMILY SSF52922 198 333 1.57E-40 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 Gene3D G3DSA:3.40.50.970 5 201 6.4E-75 T 13-10-2018 trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 Pfam PF02779 Transketolase, pyrimidine binding domain 10 179 3.5E-41 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 SMART SM00861 6 181 7.9E-54 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1808 bbd4cb20ba9be7274134edc21cff8190 339 Pfam PF02780 Transketolase, C-terminal domain 203 325 7.5E-37 T 13-10-2018 IPR033248 Transketolase, C-terminal domain trd_1469 78669a6e989044b9a6d1bcff97527921 471 ProSitePatterns PS00163 Fumarate lyases signature. 318 327 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 trd_1469 78669a6e989044b9a6d1bcff97527921 471 Pfam PF00206 Lyase 14 343 4.7E-91 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal trd_1469 78669a6e989044b9a6d1bcff97527921 471 SUPERFAMILY SSF48557 7 460 6.48E-143 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 trd_1469 78669a6e989044b9a6d1bcff97527921 471 Pfam PF10415 Fumarase C C-terminus 409 460 5.0E-20 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 272 299 9.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 318 334 9.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 9.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 181 199 9.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family trd_1469 78669a6e989044b9a6d1bcff97527921 471 Gene3D G3DSA:1.10.275.10 7 140 5.7E-58 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00145 Argininosuccinate lyase family signature 318 334 1.1E-8 T 13-10-2018 trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00145 Argininosuccinate lyase family signature 135 157 1.1E-8 T 13-10-2018 trd_1469 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00145 Argininosuccinate lyase family signature 176 196 1.1E-8 T 13-10-2018 trd_1469 78669a6e989044b9a6d1bcff97527921 471 Gene3D G3DSA:1.10.40.30 408 466 7.8E-20 T 13-10-2018 trd_1469 78669a6e989044b9a6d1bcff97527921 471 Gene3D G3DSA:1.20.200.10 141 407 1.6E-102 T 13-10-2018 trd_1943 f496311249befbca58615442d5cc25a6 542 SUPERFAMILY SSF51338 3 528 3.46E-26 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_1943 f496311249befbca58615442d5cc25a6 542 SUPERFAMILY SSF51556 60 477 5.21E-67 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_1943 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:2.30.40.10 2 63 3.8E-8 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_1943 f496311249befbca58615442d5cc25a6 542 Pfam PF07969 Amidohydrolase family 401 521 1.1E-15 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_1943 f496311249befbca58615442d5cc25a6 542 Pfam PF07969 Amidohydrolase family 48 286 2.4E-7 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_1943 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:3.20.20.140 348 472 6.0E-21 T 13-10-2018 trd_1943 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:3.20.20.140 64 312 4.5E-71 T 13-10-2018 trd_A0258 1cb4206c98ec52d84eb284ef00682b5a 281 Pfam PF12697 Alpha/beta hydrolase family 28 256 1.7E-27 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0258 1cb4206c98ec52d84eb284ef00682b5a 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 9.3E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0258 1cb4206c98ec52d84eb284ef00682b5a 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 9.3E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0258 1cb4206c98ec52d84eb284ef00682b5a 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 9.3E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0258 1cb4206c98ec52d84eb284ef00682b5a 281 SUPERFAMILY SSF53474 4 265 1.11E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0258 1cb4206c98ec52d84eb284ef00682b5a 281 Gene3D G3DSA:3.40.50.1820 3 268 5.9E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0174 15c5b9c9c5dd997b2aee4b1332e39ad9 179 SUPERFAMILY SSF52540 25 123 4.97E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0174 15c5b9c9c5dd997b2aee4b1332e39ad9 179 Gene3D G3DSA:3.40.50.300 7 164 1.6E-38 T 13-10-2018 trd_0174 15c5b9c9c5dd997b2aee4b1332e39ad9 179 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 17 148 1.3E-29 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 trd_0174 15c5b9c9c5dd997b2aee4b1332e39ad9 179 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 13 138 4.4E-34 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 trd_1235 7c6745d5f71cf940fbdcb448f535926e 81 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 18 69 6.5E-14 T 13-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter trd_1000 de1874a60036e7474b28cdfd1647439a 252 PIRSF PIRSF005650 8 251 6.5E-96 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 trd_1000 de1874a60036e7474b28cdfd1647439a 252 Hamap MF_01220_B Uridylate kinase [pyrH]. 11 245 45.299 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 trd_1000 de1874a60036e7474b28cdfd1647439a 252 SUPERFAMILY SSF53633 12 245 4.19E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_1000 de1874a60036e7474b28cdfd1647439a 252 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 14 245 2.7E-99 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 trd_1000 de1874a60036e7474b28cdfd1647439a 252 Pfam PF00696 Amino acid kinase family 15 224 9.3E-31 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 trd_1000 de1874a60036e7474b28cdfd1647439a 252 Gene3D G3DSA:3.40.1160.10 5 248 5.6E-82 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 104 1.5E-29 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 104 1.0E-38 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 SUPERFAMILY SSF50104 3 100 3.61E-35 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 Pfam PF00467 KOW motif 8 38 1.6E-5 T 13-10-2018 IPR005824 KOW trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 98 20.366 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0973 463fc0f2c6d1268a43368ea17eba1745 114 Gene3D G3DSA:2.30.30.30 2 103 5.8E-39 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 trd_A0801 89c0b1a1621f4b2c8ee3a3933098ed90 324 TIGRFAM TIGR01819 F420_cofD: 2-phospho-L-lactate transferase 12 312 8.4E-97 T 13-10-2018 IPR010115 2-phospho-L-lactate transferase GO:0000287|GO:0016780|GO:0051188 KEGG: 00680+2.7.8.28|MetaCyc: PWY-5198 trd_A0801 89c0b1a1621f4b2c8ee3a3933098ed90 324 SUPERFAMILY SSF142338 12 317 3.92E-86 T 13-10-2018 trd_A0801 89c0b1a1621f4b2c8ee3a3933098ed90 324 Pfam PF01933 Uncharacterised protein family UPF0052 12 281 1.0E-52 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 trd_A0801 89c0b1a1621f4b2c8ee3a3933098ed90 324 Hamap MF_01257 2-phospho-L-lactate transferase [cofD]. 1 324 120.047 T 13-10-2018 IPR010115 2-phospho-L-lactate transferase GO:0000287|GO:0016780|GO:0051188 KEGG: 00680+2.7.8.28|MetaCyc: PWY-5198 trd_A0801 89c0b1a1621f4b2c8ee3a3933098ed90 324 Gene3D G3DSA:1.10.8.240 46 133 2.7E-110 T 13-10-2018 trd_A0801 89c0b1a1621f4b2c8ee3a3933098ed90 324 Gene3D G3DSA:3.40.50.10680 16 296 2.7E-110 T 13-10-2018 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 SUPERFAMILY SSF63418 7 101 2.75E-22 T 13-10-2018 IPR035911 MurE/MurF, N-terminal trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 496 2.0E-143 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 496 31.097 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 SUPERFAMILY SSF53244 339 499 7.2E-39 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Gene3D G3DSA:3.90.190.20 343 501 3.1E-52 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Pfam PF01225 Mur ligase family, catalytic domain 23 98 5.3E-9 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Gene3D G3DSA:3.40.1390.10 2 100 6.0E-24 T 13-10-2018 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Gene3D G3DSA:3.40.1190.10 101 342 4.8E-74 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Pfam PF08245 Mur ligase middle domain 110 317 1.3E-45 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 SUPERFAMILY SSF53623 101 336 4.97E-63 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0930 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 425 9.4E-18 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 trd_1339 bebe08949ef69b1ef592bb63e04029be 369 Gene3D G3DSA:3.40.50.1100 49 358 8.2E-86 T 13-10-2018 trd_1339 bebe08949ef69b1ef592bb63e04029be 369 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 85 98 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 trd_1339 bebe08949ef69b1ef592bb63e04029be 369 Gene3D G3DSA:3.40.50.1100 93 189 8.2E-86 T 13-10-2018 trd_1339 bebe08949ef69b1ef592bb63e04029be 369 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 63 353 6.5E-61 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_1339 bebe08949ef69b1ef592bb63e04029be 369 SUPERFAMILY SSF53686 2 367 5.11E-76 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_1704 9c97e14b478ac936b9472d704ff3f1c0 195 Gene3D G3DSA:1.10.490.10 1 195 6.6E-75 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 trd_1704 9c97e14b478ac936b9472d704ff3f1c0 195 SUPERFAMILY SSF46458 12 182 3.45E-14 T 13-10-2018 IPR009050 Globin-like superfamily trd_1704 9c97e14b478ac936b9472d704ff3f1c0 195 Pfam PF11563 Protoglobin 23 193 1.4E-34 T 13-10-2018 trd_1755 324c6ee3a1a837271a7dc8d1d7dbc0eb 131 Pfam PF04977 Septum formation initiator 19 92 2.6E-12 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 Gene3D G3DSA:1.20.20.10 9 80 8.5E-25 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 ProSitePatterns PS00605 ATP synthase c subunit signature. 43 64 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 PRINTS PR00124 ATP synthase C subunit signature 36 51 1.2E-18 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 PRINTS PR00124 ATP synthase C subunit signature 15 34 1.2E-18 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 PRINTS PR00124 ATP synthase C subunit signature 53 78 1.2E-18 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 13 78 15.369 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 Pfam PF00137 ATP synthase subunit C 14 77 9.5E-17 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 24 79 9.8E-14 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 trd_1233 e5d2dab70ea9cea59c56ca812387d9a8 81 SUPERFAMILY SSF81333 12 79 2.09E-18 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 3 278 2.3E-120 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52518 308 496 9.64E-62 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 2 616 45.623 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 Gene3D G3DSA:3.40.50.920 486 618 1.6E-40 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 Pfam PF02779 Transketolase, pyrimidine binding domain 310 469 8.8E-42 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 5 615 5.3E-257 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 ProSitePatterns PS00801 Transketolase signature 1. 28 48 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52518 3 371 8.29E-84 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52922 482 614 1.7E-38 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 Gene3D G3DSA:3.40.50.970 309 481 4.4E-70 T 13-10-2018 trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 SMART SM00861 309 474 2.7E-74 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1276 0335bc6d6d033ca2a798f60b8f7cf143 629 Pfam PF02780 Transketolase, C-terminal domain 486 607 2.1E-33 T 13-10-2018 IPR033248 Transketolase, C-terminal domain trd_A0249 75c90c794ea3585cf79045f3352188ac 256 Gene3D G3DSA:3.40.50.300 3 243 1.9E-59 T 13-10-2018 trd_A0249 75c90c794ea3585cf79045f3352188ac 256 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0249 75c90c794ea3585cf79045f3352188ac 256 Pfam PF00005 ABC transporter 26 163 1.9E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0249 75c90c794ea3585cf79045f3352188ac 256 SUPERFAMILY SSF52540 6 232 1.1E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0249 75c90c794ea3585cf79045f3352188ac 256 SMART SM00382 34 213 1.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1127 046dd338ad9ace483429021e4537e3b3 207 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 29 203 4.7E-74 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 trd_1127 046dd338ad9ace483429021e4537e3b3 207 Gene3D G3DSA:1.10.286.10 20 73 7.4E-23 T 13-10-2018 trd_1127 046dd338ad9ace483429021e4537e3b3 207 Pfam PF01227 GTP cyclohydrolase I 29 203 1.3E-73 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 trd_1127 046dd338ad9ace483429021e4537e3b3 207 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 131 141 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 trd_1127 046dd338ad9ace483429021e4537e3b3 207 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 22 204 38.555 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 trd_1127 046dd338ad9ace483429021e4537e3b3 207 Gene3D G3DSA:3.30.1130.10 74 207 6.9E-62 T 13-10-2018 trd_1127 046dd338ad9ace483429021e4537e3b3 207 SUPERFAMILY SSF55620 16 204 6.67E-79 T 13-10-2018 trd_1127 046dd338ad9ace483429021e4537e3b3 207 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 83 99 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 Pfam PF00549 CoA-ligase 350 510 6.9E-47 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 Gene3D G3DSA:3.40.50.261 346 513 2.0E-126 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 Gene3D G3DSA:3.40.50.720 105 190 2.0E-126 T 13-10-2018 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 SUPERFAMILY SSF52210 183 314 1.03E-17 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 Gene3D G3DSA:3.40.50.261 191 345 2.0E-126 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 Pfam PF02629 CoA binding domain 193 286 1.7E-5 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_0573 18e12f96f792c0db2f3647fa1472af93 514 SUPERFAMILY SSF52210 353 512 2.09E-8 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 Pfam PF00673 ribosomal L5P family C-terminus 93 186 5.0E-40 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 SUPERFAMILY SSF55282 12 187 8.24E-75 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 10 188 44.545 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 PIRSF PIRSF002161 7 188 6.2E-64 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 Gene3D G3DSA:3.30.1440.10 8 188 1.6E-78 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 ProSitePatterns PS00358 Ribosomal protein L5 signature. 66 82 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0972 a9a8995e04fb05402a3376d709e0186f 188 Pfam PF00281 Ribosomal protein L5 36 89 6.8E-25 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_A0770 9e336f31f0d59e624cc68a60e190d4ba 330 SUPERFAMILY SSF50891 147 268 3.15E-25 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily trd_A0770 9e336f31f0d59e624cc68a60e190d4ba 330 Gene3D G3DSA:3.30.1360.40 10 102 5.5E-25 T 13-10-2018 trd_A0770 9e336f31f0d59e624cc68a60e190d4ba 330 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 27 250 9.2E-49 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D trd_A0770 9e336f31f0d59e624cc68a60e190d4ba 330 Gene3D G3DSA:2.40.100.10 108 328 1.3E-74 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily trd_A0770 9e336f31f0d59e624cc68a60e190d4ba 330 SUPERFAMILY SSF160467 27 119 5.89E-18 T 13-10-2018 trd_A0770 9e336f31f0d59e624cc68a60e190d4ba 330 SMART SM00796 25 258 6.3E-63 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D trd_A0311 b526ef819a64e24d8b07415e3100beca 462 SUPERFAMILY SSF52402 15 150 3.68E-23 T 13-10-2018 trd_A0311 b526ef819a64e24d8b07415e3100beca 462 SUPERFAMILY SSF52402 161 288 7.53E-27 T 13-10-2018 trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Gene3D G3DSA:3.40.50.620 13 151 7.4E-24 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Gene3D G3DSA:3.40.50.620 158 289 1.7E-26 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0311 b526ef819a64e24d8b07415e3100beca 462 PRINTS PR01438 Universal stress protein signature 264 286 7.0E-15 T 13-10-2018 IPR006015 Universal stress protein A trd_A0311 b526ef819a64e24d8b07415e3100beca 462 PRINTS PR01438 Universal stress protein signature 246 258 7.0E-15 T 13-10-2018 IPR006015 Universal stress protein A trd_A0311 b526ef819a64e24d8b07415e3100beca 462 PRINTS PR01438 Universal stress protein signature 161 179 7.0E-15 T 13-10-2018 IPR006015 Universal stress protein A trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Pfam PF00582 Universal stress protein family 162 284 1.6E-17 T 13-10-2018 IPR006016 UspA trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Pfam PF00582 Universal stress protein family 25 147 3.6E-18 T 13-10-2018 IPR006016 UspA trd_A0311 b526ef819a64e24d8b07415e3100beca 462 SMART SM00116 402 449 9.3E-15 T 13-10-2018 IPR000644 CBS domain trd_A0311 b526ef819a64e24d8b07415e3100beca 462 SMART SM00116 313 361 2.2E-11 T 13-10-2018 IPR000644 CBS domain trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Gene3D G3DSA:3.10.580.10 291 456 3.6E-44 T 13-10-2018 trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Pfam PF00571 CBS domain 306 357 3.5E-14 T 13-10-2018 IPR000644 CBS domain trd_A0311 b526ef819a64e24d8b07415e3100beca 462 Pfam PF00571 CBS domain 396 449 2.2E-14 T 13-10-2018 IPR000644 CBS domain trd_A0311 b526ef819a64e24d8b07415e3100beca 462 SUPERFAMILY SSF54631 300 449 1.39E-37 T 13-10-2018 trd_0827 e10e0be8d0ffbb4c99181a9352f20708 127 SUPERFAMILY SSF55200 24 109 8.11E-31 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 trd_0827 e10e0be8d0ffbb4c99181a9352f20708 127 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 24 108 2.5E-34 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 trd_0827 e10e0be8d0ffbb4c99181a9352f20708 127 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 108 5.4E-40 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 trd_0827 e10e0be8d0ffbb4c99181a9352f20708 127 Gene3D G3DSA:3.30.110.10 19 118 1.9E-35 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 trd_A0237 223ae65e8dfc327e2c0047bbfdb2eaff 196 SUPERFAMILY SSF52980 8 186 2.9E-44 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 trd_A0237 223ae65e8dfc327e2c0047bbfdb2eaff 196 Gene3D G3DSA:3.90.1570.10 3 188 1.3E-45 T 13-10-2018 trd_A0237 223ae65e8dfc327e2c0047bbfdb2eaff 196 Pfam PF05685 Putative restriction endonuclease 14 183 2.7E-34 T 13-10-2018 IPR008538 Domain of unknown function DUF820 trd_1408 1e821e4527718dc38eb4dcc0aa6fd1f6 328 PIRSF PIRSF000355 1 328 4.2E-94 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_1408 1e821e4527718dc38eb4dcc0aa6fd1f6 328 SUPERFAMILY SSF47240 4 325 8.12E-80 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_1408 1e821e4527718dc38eb4dcc0aa6fd1f6 328 Gene3D G3DSA:1.10.620.20 5 322 6.3E-88 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 trd_1408 1e821e4527718dc38eb4dcc0aa6fd1f6 328 Pfam PF00268 Ribonucleotide reductase, small chain 14 297 3.1E-69 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_A0819 ce07e730664e1b4239a293aa1de3d67c 378 Gene3D G3DSA:3.40.50.2000 1 195 7.6E-9 T 13-10-2018 trd_A0819 ce07e730664e1b4239a293aa1de3d67c 378 SUPERFAMILY SSF53756 2 355 3.49E-61 T 13-10-2018 trd_A0819 ce07e730664e1b4239a293aa1de3d67c 378 Pfam PF00534 Glycosyl transferases group 1 199 330 2.9E-21 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_A0819 ce07e730664e1b4239a293aa1de3d67c 378 Pfam PF13439 Glycosyltransferase Family 4 13 189 1.9E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_A0819 ce07e730664e1b4239a293aa1de3d67c 378 Gene3D G3DSA:3.40.50.2000 196 335 6.7E-31 T 13-10-2018 trd_1490 aead8b04fc1afcadebc4ba81ebf2458f 108 SUPERFAMILY SSF51182 5 101 2.2E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_1490 aead8b04fc1afcadebc4ba81ebf2458f 108 Gene3D G3DSA:2.60.120.10 2 107 1.8E-16 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_1490 aead8b04fc1afcadebc4ba81ebf2458f 108 Pfam PF07883 Cupin domain 37 88 2.9E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel trd_0956 75172a7613515d707537b424caf0ff3f 117 SUPERFAMILY SSF64263 1 116 8.11E-43 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0956 75172a7613515d707537b424caf0ff3f 117 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 116 6.8E-36 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0956 75172a7613515d707537b424caf0ff3f 117 Pfam PF01196 Ribosomal protein L17 20 116 2.6E-32 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0956 75172a7613515d707537b424caf0ff3f 117 Gene3D G3DSA:3.90.1030.10 1 117 5.0E-42 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0956 75172a7613515d707537b424caf0ff3f 117 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.112 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1289 174c66828ee417ba1e38602785cd9629 165 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 147 18.029 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 trd_1289 174c66828ee417ba1e38602785cd9629 165 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 108 118 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site trd_1289 174c66828ee417ba1e38602785cd9629 165 SUPERFAMILY SSF55486 16 148 1.73E-33 T 13-10-2018 trd_1289 174c66828ee417ba1e38602785cd9629 165 Pfam PF02130 Uncharacterized protein family UPF0054 26 137 1.6E-30 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 trd_1289 174c66828ee417ba1e38602785cd9629 165 Gene3D G3DSA:3.40.390.30 7 145 5.3E-31 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 trd_1289 174c66828ee417ba1e38602785cd9629 165 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 138 2.0E-24 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 Pfam PF01145 SPFH domain / Band 7 family 26 195 2.7E-37 T 13-10-2018 IPR001107 Band 7 domain trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 SUPERFAMILY SSF117892 53 186 8.11E-45 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 131 154 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 29 51 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 111 128 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 199 222 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 174 195 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 76 97 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 155 173 8.8E-71 T 13-10-2018 IPR001972 Stomatin family GO:0016020 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 Gene3D G3DSA:3.30.479.30 50 181 2.8E-51 T 13-10-2018 trd_1268 a60f565817ad67a6bfd0f2856ee0a160 265 SMART SM00244 22 179 9.3E-67 T 13-10-2018 IPR001107 Band 7 domain trd_1505 af8ce30985d7c62228125d288cea2eae 421 Pfam PF00675 Insulinase (Peptidase family M16) 13 160 2.8E-40 T 13-10-2018 IPR011765 Peptidase M16, N-terminal trd_1505 af8ce30985d7c62228125d288cea2eae 421 Gene3D G3DSA:3.30.830.10 224 416 4.6E-51 T 13-10-2018 trd_1505 af8ce30985d7c62228125d288cea2eae 421 SUPERFAMILY SSF63411 2 207 1.19E-61 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 trd_1505 af8ce30985d7c62228125d288cea2eae 421 Gene3D G3DSA:3.30.830.10 4 218 1.1E-73 T 13-10-2018 trd_1505 af8ce30985d7c62228125d288cea2eae 421 SUPERFAMILY SSF63411 230 411 1.83E-43 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 trd_1505 af8ce30985d7c62228125d288cea2eae 421 Pfam PF05193 Peptidase M16 inactive domain 168 341 1.0E-38 T 13-10-2018 IPR007863 Peptidase M16, C-terminal trd_1505 af8ce30985d7c62228125d288cea2eae 421 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 trd_0117 c5d210bbea665680801d2e822be33547 716 SUPERFAMILY SSF52210 134 293 1.83E-28 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0117 c5d210bbea665680801d2e822be33547 716 Pfam PF13549 ATP-grasp domain 493 708 4.9E-53 T 13-10-2018 trd_0117 c5d210bbea665680801d2e822be33547 716 Gene3D G3DSA:3.40.50.261 296 458 1.2E-26 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0117 c5d210bbea665680801d2e822be33547 716 SUPERFAMILY SSF52210 298 457 8.63E-29 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0117 c5d210bbea665680801d2e822be33547 716 SUPERFAMILY SSF56059 495 708 6.89E-38 T 13-10-2018 trd_0117 c5d210bbea665680801d2e822be33547 716 Gene3D G3DSA:3.30.470.20 494 706 3.6E-66 T 13-10-2018 trd_0117 c5d210bbea665680801d2e822be33547 716 SMART SM00881 9 103 3.5E-24 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_0117 c5d210bbea665680801d2e822be33547 716 Gene3D G3DSA:3.40.50.261 133 293 4.4E-36 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_0117 c5d210bbea665680801d2e822be33547 716 Gene3D G3DSA:3.30.1490.20 513 589 3.6E-66 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_0117 c5d210bbea665680801d2e822be33547 716 SUPERFAMILY SSF51735 4 139 9.85E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0117 c5d210bbea665680801d2e822be33547 716 Pfam PF13380 CoA binding domain 13 137 5.9E-21 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_0117 c5d210bbea665680801d2e822be33547 716 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 157 292 4.0E-35 T 13-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain trd_0117 c5d210bbea665680801d2e822be33547 716 Gene3D G3DSA:3.40.50.720 4 132 2.0E-35 T 13-10-2018 trd_1746 45803025f6d852a5a896548d2d374f63 1187 PIRSF PIRSF005719 3 1185 1.6E-236 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein trd_1746 45803025f6d852a5a896548d2d374f63 1187 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 4 1181 5.5E-235 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 trd_1746 45803025f6d852a5a896548d2d374f63 1187 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 1174 4.8E-61 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal trd_1746 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 4 272 1.3E-42 T 13-10-2018 trd_1746 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 951 1185 2.0E-44 T 13-10-2018 trd_1746 45803025f6d852a5a896548d2d374f63 1187 SMART SM00968 521 638 6.1E-31 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 trd_1746 45803025f6d852a5a896548d2d374f63 1187 Hamap MF_01894 Chromosome partition protein Smc [smc]. 3 1183 19.924 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 trd_1746 45803025f6d852a5a896548d2d374f63 1187 SUPERFAMILY SSF52540 3 1179 8.5E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1746 45803025f6d852a5a896548d2d374f63 1187 SUPERFAMILY SSF75553 505 681 1.11E-37 T 13-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 trd_1746 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.30.70.1620 581 667 3.3E-45 T 13-10-2018 trd_1746 45803025f6d852a5a896548d2d374f63 1187 Pfam PF06470 SMC proteins Flexible Hinge Domain 521 637 8.6E-26 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 trd_1746 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:1.20.1060.20 506 674 3.3E-45 T 13-10-2018 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 Pfam PF02254 TrkA-N domain 3 116 5.1E-27 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 Gene3D G3DSA:3.40.50.720 1 134 7.4E-38 T 13-10-2018 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 SUPERFAMILY SSF51735 2 136 2.96E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 4.1E-14 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 4.1E-14 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 4.1E-14 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 4.1E-14 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_1479 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 4.1E-14 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 trd_0689 6d1fbef777d17f5c01dea04d1205dd2f 581 Gene3D G3DSA:1.25.40.10 360 579 2.6E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0980 6648051a64988ed24cfac30ae9a74061 94 PIRSF PIRSF002144 1 94 1.6E-31 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 Gene3D G3DSA:3.30.860.10 1 93 2.2E-37 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 SUPERFAMILY SSF54570 3 85 6.67E-34 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 Pfam PF00203 Ribosomal protein S19 3 83 1.2E-33 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 6.3E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 6.3E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 6.3E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.122 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0980 6648051a64988ed24cfac30ae9a74061 94 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 90 3.2E-41 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 Gene3D G3DSA:1.10.8.60 184 258 1.5E-28 T 13-10-2018 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 SUPERFAMILY SSF46785 258 332 4.08E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 Gene3D G3DSA:1.10.10.10 259 339 2.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 SUPERFAMILY SSF52540 20 253 3.6E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 328 2.0E-34 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 331 1.0E-27 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 SMART SM00382 53 202 4.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 Gene3D G3DSA:3.40.50.300 22 183 9.5E-39 T 13-10-2018 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 353 167.722 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 6 236 2.1E-113 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 trd_0718 cea959b883724c3bd6beecbdfe2b9739 353 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 328 5.4E-140 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 trd_0904 344e159d770f040ecc01a2a4c03558a2 243 SUPERFAMILY SSF102588 5 239 1.7E-49 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0904 344e159d770f040ecc01a2a4c03558a2 243 Gene3D G3DSA:3.40.50.10320 4 240 4.5E-78 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0904 344e159d770f040ecc01a2a4c03558a2 243 Pfam PF02585 GlcNAc-PI de-N-acetylase 8 136 1.2E-19 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 trd_A0340 204b1656f5d4b36ee9df880b23b10549 184 Pfam PF00866 Ring hydroxylating beta subunit 29 176 1.5E-35 T 13-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 trd_A0340 204b1656f5d4b36ee9df880b23b10549 184 Gene3D G3DSA:3.10.450.50 16 184 5.8E-52 T 13-10-2018 trd_A0340 204b1656f5d4b36ee9df880b23b10549 184 SUPERFAMILY SSF54427 18 184 7.43E-43 T 13-10-2018 IPR032710 NTF2-like domain superfamily trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 Gene3D G3DSA:3.50.50.60 6 306 1.5E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 Gene3D G3DSA:3.50.50.60 114 238 1.5E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 300 9.9E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 SUPERFAMILY SSF51905 4 189 2.22E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.3E-14 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 1.3E-14 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 1.3E-14 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 1.3E-14 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 Pfam PF14759 Reductase C-terminal 320 403 2.1E-28 T 13-10-2018 IPR028202 Reductase, C-terminal trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 Gene3D G3DSA:3.30.390.30 320 404 2.2E-27 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 SUPERFAMILY SSF51905 145 307 8.2E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.3E-23 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.3E-23 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.3E-23 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 1.3E-23 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 1.3E-23 T 13-10-2018 trd_A0836 c944f9860573d3d3f9e29957d1e05bae 404 SUPERFAMILY SSF55424 312 403 1.74E-30 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 SUPERFAMILY SSF53633 1 311 3.01E-82 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 74 92 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 43 62 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 212 227 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 267 282 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 158 177 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 181 199 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 109 128 2.3E-59 T 13-10-2018 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 PIRSF PIRSF000723 1 313 2.4E-125 T 13-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 Pfam PF00696 Amino acid kinase family 3 289 1.9E-35 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 TIGRFAM TIGR00746 arcC: carbamate kinase 2 312 2.5E-115 T 13-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 trd_0571 77d4f9dad6431dc3c43f9e719b21ac34 315 Gene3D G3DSA:3.40.1160.10 1 313 2.0E-124 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 SUPERFAMILY SSF52096 236 492 1.38E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 Pfam PF01039 Carboxyl transferase domain 33 418 1.6E-45 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 191 493 38.261 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 Gene3D G3DSA:3.90.226.10 221 494 8.5E-96 T 13-10-2018 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 97 115 1.3E-35 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 63 77 1.3E-35 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 184 193 1.3E-35 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 134 151 1.3E-35 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 174 1.3E-35 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 Gene3D G3DSA:3.90.226.10 1 217 5.6E-66 T 13-10-2018 trd_0882 7bed43c024d812f8c9bee3fbd1b0a059 541 SUPERFAMILY SSF52096 1 211 2.13E-64 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_1378 3f2c422d4e41743c244c9dfd2945058a 119 SUPERFAMILY SSF54913 6 105 2.11E-36 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_1378 3f2c422d4e41743c244c9dfd2945058a 119 Gene3D G3DSA:3.30.70.120 5 115 2.7E-41 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal trd_1378 3f2c422d4e41743c244c9dfd2945058a 119 Pfam PF02641 Uncharacterized ACR, COG1993 9 104 3.9E-39 T 13-10-2018 IPR003793 Domain of unknown function DUF190 trd_0770 13786d44b34f3f0064cd47141f3499a5 302 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 2 212 9.1E-65 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0770 13786d44b34f3f0064cd47141f3499a5 302 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 174 214 2.0E-7 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 trd_0770 13786d44b34f3f0064cd47141f3499a5 302 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 173 2.5E-42 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 trd_0770 13786d44b34f3f0064cd47141f3499a5 302 SUPERFAMILY SSF55120 2 217 1.92E-69 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0770 13786d44b34f3f0064cd47141f3499a5 302 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 287 16.029 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0770 13786d44b34f3f0064cd47141f3499a5 302 Gene3D G3DSA:3.30.2350.10 1 228 2.8E-79 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 SUPERFAMILY SSF51905 5 201 1.36E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1278 f2644e8700b3772d010572d7d0524333 452 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 335 436 4.2E-17 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 1.4E-30 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 1.4E-30 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.4E-30 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 256 1.4E-30 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.4E-30 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 SUPERFAMILY SSF55424 328 448 1.01E-31 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 trd_1278 f2644e8700b3772d010572d7d0524333 452 SUPERFAMILY SSF51905 157 323 1.07E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1278 f2644e8700b3772d010572d7d0524333 452 Gene3D G3DSA:3.50.50.60 118 445 5.9E-161 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1278 f2644e8700b3772d010572d7d0524333 452 Gene3D G3DSA:3.50.50.60 7 345 5.9E-161 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 181 2.4E-17 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 241 255 2.4E-17 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 328 349 2.4E-17 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.4E-17 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 282 289 2.4E-17 T 13-10-2018 trd_1278 f2644e8700b3772d010572d7d0524333 452 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 311 2.1E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_1355 1de43657727a1e0cbd171886d16757f4 345 Gene3D G3DSA:3.20.20.30 49 341 9.6E-57 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1355 1de43657727a1e0cbd171886d16757f4 345 SUPERFAMILY SSF51679 51 341 5.1E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1355 1de43657727a1e0cbd171886d16757f4 345 Pfam PF00296 Luciferase-like monooxygenase 63 271 5.1E-41 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_0310 6caa137f944be77ba995d41684db31b5 147 SUPERFAMILY SSF82784 4 140 2.88E-34 T 13-10-2018 IPR036102 OsmC/Ohr superfamily trd_0310 6caa137f944be77ba995d41684db31b5 147 Pfam PF02566 OsmC-like protein 34 138 2.1E-19 T 13-10-2018 IPR003718 OsmC/Ohr family trd_0310 6caa137f944be77ba995d41684db31b5 147 Gene3D G3DSA:3.30.300.20 1 130 4.8E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_A0839 44d8b7c4a82378ad86475fa9e1289a21 515 SUPERFAMILY SSF53448 104 344 1.88E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0839 44d8b7c4a82378ad86475fa9e1289a21 515 TIGRFAM TIGR03965 mycofact_glyco: mycofactocin system glycosyltransferase 27 506 3.6E-194 T 13-10-2018 IPR023981 Putative mycofactocin biosynthesis glycosyltransferase trd_A0839 44d8b7c4a82378ad86475fa9e1289a21 515 Gene3D G3DSA:3.90.550.10 103 321 2.2E-50 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0839 44d8b7c4a82378ad86475fa9e1289a21 515 Pfam PF00535 Glycosyl transferase family 2 113 277 7.1E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_A0838 1123b554ebdf4b7de89e273de88be8bc 200 Pfam PF09360 Iron-binding zinc finger CDGSH type 11 56 3.4E-18 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 trd_A0838 1123b554ebdf4b7de89e273de88be8bc 200 Gene3D G3DSA:3.40.5.90 2 65 1.6E-19 T 13-10-2018 trd_A0838 1123b554ebdf4b7de89e273de88be8bc 200 SUPERFAMILY SSF50022 97 193 6.29E-30 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_A0838 1123b554ebdf4b7de89e273de88be8bc 200 Pfam PF00355 Rieske [2Fe-2S] domain 98 182 1.1E-16 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 trd_A0838 1123b554ebdf4b7de89e273de88be8bc 200 Gene3D G3DSA:2.102.10.10 88 198 8.5E-32 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 trd_A0838 1123b554ebdf4b7de89e273de88be8bc 200 SMART SM00704 18 61 2.0E-10 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Gene3D G3DSA:2.120.10.30 151 290 2.7E-21 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Gene3D G3DSA:2.120.10.30 291 398 1.2E-10 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Gene3D G3DSA:3.40.50.1820 410 657 3.8E-78 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 SUPERFAMILY SSF82171 16 395 4.71E-54 T 13-10-2018 trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Pfam PF00326 Prolyl oligopeptidase family 448 657 3.0E-56 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 SUPERFAMILY SSF53474 410 657 1.77E-67 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Gene3D G3DSA:2.120.10.30 7 150 1.8E-27 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Pfam PF07676 WD40-like Beta Propeller Repeat 57 92 1.4E-7 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Pfam PF07676 WD40-like Beta Propeller Repeat 241 253 0.11 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Pfam PF07676 WD40-like Beta Propeller Repeat 101 134 1.8E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_0264 8f7b36d21b7b0fe0951c4d0584a70742 657 Pfam PF07676 WD40-like Beta Propeller Repeat 179 210 2.4E-8 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_1463 150bf93022ea829d90b0b7b5e16abe76 336 Pfam PF03747 ADP-ribosylglycohydrolase 16 300 9.8E-48 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 trd_1463 150bf93022ea829d90b0b7b5e16abe76 336 SUPERFAMILY SSF101478 9 321 6.8E-58 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily trd_1463 150bf93022ea829d90b0b7b5e16abe76 336 Gene3D G3DSA:1.10.4080.10 7 331 8.7E-62 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily trd_A0900 e8e651ab0dc5ed055e09450f6aff82f6 404 Pfam PF04055 Radical SAM superfamily 73 247 6.1E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_A0900 e8e651ab0dc5ed055e09450f6aff82f6 404 SUPERFAMILY SSF102114 40 363 8.44E-47 T 13-10-2018 trd_A0900 e8e651ab0dc5ed055e09450f6aff82f6 404 Gene3D G3DSA:3.20.20.70 6 312 3.4E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0900 e8e651ab0dc5ed055e09450f6aff82f6 404 Hamap MF_01611 FO synthase subunit 1 [cofG]. 63 389 49.534 T 13-10-2018 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77 trd_A0900 e8e651ab0dc5ed055e09450f6aff82f6 404 SMART SM00729 67 300 1.1E-9 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_A0900 e8e651ab0dc5ed055e09450f6aff82f6 404 TIGRFAM TIGR03550 F420_cofG: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit 64 387 7.9E-144 T 13-10-2018 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77 trd_A0333 7464ecfa76b6f280baf4d374a180f386 257 Gene3D G3DSA:3.90.226.10 4 253 4.4E-66 T 13-10-2018 trd_A0333 7464ecfa76b6f280baf4d374a180f386 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 trd_A0333 7464ecfa76b6f280baf4d374a180f386 257 SUPERFAMILY SSF52096 6 250 6.06E-67 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0333 7464ecfa76b6f280baf4d374a180f386 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 251 1.8E-43 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_0736 7a93e15c41c2ca177cd0a9048df830db 154 Gene3D G3DSA:1.10.260.40 2 66 9.0E-17 T 13-10-2018 trd_0736 7a93e15c41c2ca177cd0a9048df830db 154 SUPERFAMILY SSF47413 3 60 5.9E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 trd_0736 7a93e15c41c2ca177cd0a9048df830db 154 Pfam PF13560 Helix-turn-helix domain 4 65 7.3E-18 T 13-10-2018 trd_0736 7a93e15c41c2ca177cd0a9048df830db 154 SMART SM00530 7 62 1.8E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 trd_1914 0c9dae10877da048f36db1d830f4cbaa 271 Gene3D G3DSA:3.20.20.30 107 262 3.8E-13 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1914 0c9dae10877da048f36db1d830f4cbaa 271 Gene3D G3DSA:3.20.20.30 5 106 7.2E-12 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1914 0c9dae10877da048f36db1d830f4cbaa 271 Pfam PF00296 Luciferase-like monooxygenase 11 103 9.4E-13 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_1914 0c9dae10877da048f36db1d830f4cbaa 271 Pfam PF00296 Luciferase-like monooxygenase 118 244 1.2E-6 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_1914 0c9dae10877da048f36db1d830f4cbaa 271 SUPERFAMILY SSF51679 7 229 3.7E-24 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_A0919 6c1f4ac3230598cc23b5b1bb8cfc54fd 497 Gene3D G3DSA:1.10.620.20 1 496 1.8E-166 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 trd_A0919 6c1f4ac3230598cc23b5b1bb8cfc54fd 497 SUPERFAMILY SSF47240 5 487 6.49E-142 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_A0919 6c1f4ac3230598cc23b5b1bb8cfc54fd 497 Pfam PF04945 YHS domain 415 442 5.3E-10 T 13-10-2018 IPR007029 YHS domain trd_A0919 6c1f4ac3230598cc23b5b1bb8cfc54fd 497 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 18 248 1.6E-72 T 13-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 trd_0526 cb2242d93d5f060a05432b2769338a2c 363 Hamap MF_02040 Iron-sulfur cluster carrier protein. 94 341 39.84 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein trd_0526 cb2242d93d5f060a05432b2769338a2c 363 SUPERFAMILY SSF117916 1 79 2.06E-24 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_0526 cb2242d93d5f060a05432b2769338a2c 363 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 99 339 9.7E-105 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 trd_0526 cb2242d93d5f060a05432b2769338a2c 363 Gene3D G3DSA:3.40.50.300 92 340 2.0E-89 T 13-10-2018 trd_0526 cb2242d93d5f060a05432b2769338a2c 363 Pfam PF01883 Iron-sulfur cluster assembly protein 6 77 2.2E-26 T 13-10-2018 IPR002744 MIP18 family-like trd_0526 cb2242d93d5f060a05432b2769338a2c 363 Gene3D G3DSA:3.30.300.130 1 86 1.2E-23 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_0526 cb2242d93d5f060a05432b2769338a2c 363 SUPERFAMILY SSF52540 101 345 4.28E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0526 cb2242d93d5f060a05432b2769338a2c 363 ProSitePatterns PS01215 Mrp family signature. 204 220 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 SUPERFAMILY SSF50692 637 825 4.56E-48 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 Pfam PF00384 Molybdopterin oxidoreductase 6 380 2.4E-17 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 824 3.4E-251 T 13-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 Gene3D G3DSA:2.40.40.20 648 825 2.7E-73 T 13-10-2018 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 Gene3D G3DSA:3.40.50.740 316 476 5.1E-56 T 13-10-2018 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 Gene3D G3DSA:3.40.228.10 551 647 1.1E-26 T 13-10-2018 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 738 765 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 Pfam PF01568 Molydopterin dinucleotide binding domain 700 816 2.3E-17 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 trd_A0057 9ec85d55a8c482ea0fddeddeeada41a2 826 SUPERFAMILY SSF53706 1 658 1.96E-176 T 13-10-2018 trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 SUPERFAMILY SSF53092 4 137 2.62E-19 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 Pfam PF00557 Metallopeptidase family M24 146 349 1.8E-66 T 13-10-2018 IPR000994 Peptidase M24 trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 Gene3D G3DSA:3.90.230.10 140 364 1.2E-80 T 13-10-2018 trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 Pfam PF01321 Creatinase/Prolidase N-terminal domain 6 138 6.5E-19 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 Gene3D G3DSA:3.40.350.10 1 137 4.6E-25 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 295 307 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site trd_1697 ac81bcb1302991021e5eb68113c6a43c 367 SUPERFAMILY SSF55920 139 363 3.93E-76 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like trd_0714 bb1479ccda36e30948b9462aa360a243 380 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 247 1.2E-28 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 trd_0714 bb1479ccda36e30948b9462aa360a243 380 SUPERFAMILY SSF55979 249 375 9.81E-27 T 13-10-2018 trd_0714 bb1479ccda36e30948b9462aa360a243 380 SMART SM00480 17 373 3.6E-94 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 trd_0714 bb1479ccda36e30948b9462aa360a243 380 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 249 375 8.4E-23 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 trd_0714 bb1479ccda36e30948b9462aa360a243 380 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 375 5.2E-86 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 trd_0714 bb1479ccda36e30948b9462aa360a243 380 SUPERFAMILY SSF55979 3 117 6.98E-21 T 13-10-2018 trd_0714 bb1479ccda36e30948b9462aa360a243 380 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 2 120 5.2E-22 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 trd_0714 bb1479ccda36e30948b9462aa360a243 380 Gene3D G3DSA:3.10.150.10 3 246 1.2E-113 T 13-10-2018 trd_0714 bb1479ccda36e30948b9462aa360a243 380 SUPERFAMILY SSF55979 130 248 2.36E-22 T 13-10-2018 trd_0714 bb1479ccda36e30948b9462aa360a243 380 Gene3D G3DSA:3.70.10.10 139 375 1.2E-113 T 13-10-2018 trd_0714 bb1479ccda36e30948b9462aa360a243 380 PIRSF PIRSF000804 1 378 4.7E-100 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 trd_0655 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Gene3D G3DSA:3.40.50.720 6 354 5.3E-129 T 13-10-2018 trd_0655 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 PIRSF PIRSF015578 1 368 2.0E-87 T 13-10-2018 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 trd_0655 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 SUPERFAMILY SSF51735 5 356 3.21E-93 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0655 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Gene3D G3DSA:3.30.360.10 192 301 5.3E-129 T 13-10-2018 trd_0655 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 SUPERFAMILY SSF55347 191 301 6.67E-39 T 13-10-2018 trd_0655 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Pfam PF01658 Myo-inositol-1-phosphate synthase 193 301 2.4E-34 T 13-10-2018 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 trd_1216 8aaa045f0e99978bc5589e8a64849339 63 TIGRFAM TIGR04391 CcmD_alt_fam: CcmD family protein 5 36 4.0E-7 T 13-10-2018 IPR030888 Putative ccm operon protein trd_1468 8cd97a639cc166de9ecd46452fdfd928 478 Gene3D G3DSA:3.40.605.10 34 458 2.1E-153 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 trd_1468 8cd97a639cc166de9ecd46452fdfd928 478 SUPERFAMILY SSF53720 3 475 7.33E-149 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 trd_1468 8cd97a639cc166de9ecd46452fdfd928 478 Pfam PF00171 Aldehyde dehydrogenase family 15 468 1.2E-148 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 trd_1468 8cd97a639cc166de9ecd46452fdfd928 478 Gene3D G3DSA:3.40.309.10 251 440 2.1E-153 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 SUPERFAMILY SSF56420 2 164 1.7E-55 T 13-10-2018 IPR036821 Peptide deformylase superfamily trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 Gene3D G3DSA:3.90.45.10 1 175 2.7E-56 T 13-10-2018 IPR036821 Peptide deformylase superfamily trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 Hamap MF_00163 Peptide deformylase [def]. 2 168 29.402 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 PIRSF PIRSF004749 1 172 1.3E-51 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 157 1.3E-45 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 Pfam PF01327 Polypeptide deformylase 4 156 7.6E-49 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 107 125 1.8E-35 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 126 155 1.8E-35 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 95 106 1.8E-35 T 13-10-2018 IPR023635 Peptide deformylase trd_1614 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 33 62 1.8E-35 T 13-10-2018 IPR023635 Peptide deformylase trd_0997 fc70cb13f3e8ec2cceb3bb1d8e1d8ae8 300 SMART SM00287 229 299 7.5E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0997 fc70cb13f3e8ec2cceb3bb1d8e1d8ae8 300 Pfam PF08239 Bacterial SH3 domain 240 296 1.7E-12 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0997 fc70cb13f3e8ec2cceb3bb1d8e1d8ae8 300 Gene3D G3DSA:2.30.30.40 230 299 2.4E-15 T 13-10-2018 trd_0277 c8a6e3e47a41d985ce89afadbe4db1ed 251 Pfam PF01694 Rhomboid family 73 227 9.3E-39 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 trd_0277 c8a6e3e47a41d985ce89afadbe4db1ed 251 Gene3D G3DSA:1.20.1540.10 11 235 3.8E-29 T 13-10-2018 IPR035952 Rhomboid-like superfamily trd_0277 c8a6e3e47a41d985ce89afadbe4db1ed 251 SUPERFAMILY SSF144091 12 231 6.15E-43 T 13-10-2018 trd_0781 6172662016b239809248d55db65d77ea 73 Pfam PF03840 Preprotein translocase SecG subunit 5 68 2.1E-14 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 trd_0781 6172662016b239809248d55db65d77ea 73 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 69 8.3E-15 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 trd_0202 c311d2287064429d07f2a0c83375afc8 562 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 132 218 2.0E-4 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_0202 c311d2287064429d07f2a0c83375afc8 562 Gene3D G3DSA:3.40.50.300 116 295 8.0E-24 T 13-10-2018 trd_0202 c311d2287064429d07f2a0c83375afc8 562 SUPERFAMILY SSF82708 509 557 2.55E-8 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 trd_0202 c311d2287064429d07f2a0c83375afc8 562 SMART SM00393 476 558 2.8E-6 T 13-10-2018 IPR001374 R3H domain GO:0003676 trd_0202 c311d2287064429d07f2a0c83375afc8 562 Pfam PF01424 R3H domain 503 557 5.8E-9 T 13-10-2018 IPR001374 R3H domain GO:0003676 trd_0202 c311d2287064429d07f2a0c83375afc8 562 SUPERFAMILY SSF52540 29 273 1.36E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0202 c311d2287064429d07f2a0c83375afc8 562 Gene3D G3DSA:3.30.1370.50 493 561 6.0E-6 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 trd_0202 c311d2287064429d07f2a0c83375afc8 562 SMART SM00382 128 284 2.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0123 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.50.50.60 5 357 4.3E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0123 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.30.9.10 85 319 4.3E-89 T 13-10-2018 trd_0123 2f0b4abe8eae72f6501793b7c68c7b0d 387 Pfam PF01266 FAD dependent oxidoreductase 5 352 1.5E-61 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0123 2f0b4abe8eae72f6501793b7c68c7b0d 387 SUPERFAMILY SSF51905 5 376 3.63E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1112 ee481414257f99441242ebf0b7953012 93 Pfam PF13937 Domain of unknown function (DUF4212) 14 90 6.0E-30 T 13-10-2018 IPR019886 Sodium symporter small subunit, predicted trd_1112 ee481414257f99441242ebf0b7953012 93 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 15 92 5.5E-27 T 13-10-2018 IPR019886 Sodium symporter small subunit, predicted trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 Pfam PF01966 HD domain 283 386 7.4E-11 T 13-10-2018 IPR006674 HD domain trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 Gene3D G3DSA:1.10.3090.10 168 455 5.2E-52 T 13-10-2018 trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 Gene3D G3DSA:3.30.460.10 27 167 8.9E-40 T 13-10-2018 trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 195 254 2.2E-18 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 TIGRFAM TIGR00277 HDIG: HDIG domain 281 339 1.3E-8 T 13-10-2018 IPR006675 HDIG domain trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 SUPERFAMILY SSF81301 19 165 4.14E-39 T 13-10-2018 trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 SUPERFAMILY SSF81891 166 469 2.49E-60 T 13-10-2018 trd_0049 d69af8ee1ba8f30a4a6e8b5a7fff9380 485 Pfam PF01743 Poly A polymerase head domain 43 168 1.4E-30 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 trd_1149 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 Pfam PF00005 ABC transporter 36 173 2.7E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1149 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 SMART SM00382 44 222 6.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1149 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 Gene3D G3DSA:3.40.50.300 8 246 3.0E-62 T 13-10-2018 trd_1149 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1149 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 SUPERFAMILY SSF52540 13 238 4.12E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 Gene3D G3DSA:3.30.70.360 211 325 1.1E-132 T 13-10-2018 trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 405 7.0E-118 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 Pfam PF01546 Peptidase family M20/M25/M40 101 413 9.1E-40 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 Gene3D G3DSA:3.40.630.10 67 402 1.1E-132 T 13-10-2018 trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 PIRSF PIRSF005962 1 419 1.5E-129 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 SUPERFAMILY SSF55031 213 326 6.67E-33 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 Pfam PF07687 Peptidase dimerisation domain 215 310 2.0E-13 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_A0657 9ba208d69d6843a5b237a45b08f88a58 420 SUPERFAMILY SSF53187 5 417 2.46E-82 T 13-10-2018 trd_1791 88e6e988e6cc813250001550d0bdfa51 397 Gene3D G3DSA:3.30.750.80 74 182 2.7E-35 T 13-10-2018 trd_1791 88e6e988e6cc813250001550d0bdfa51 397 SUPERFAMILY SSF88697 3 73 4.25E-18 T 13-10-2018 IPR015947 PUA-like superfamily trd_1791 88e6e988e6cc813250001550d0bdfa51 397 SUPERFAMILY SSF53335 80 393 3.21E-69 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1791 88e6e988e6cc813250001550d0bdfa51 397 SMART SM00359 4 89 2.2E-10 T 13-10-2018 IPR002478 PUA domain GO:0003723 trd_1791 88e6e988e6cc813250001550d0bdfa51 397 Gene3D G3DSA:3.40.50.150 184 396 2.9E-68 T 13-10-2018 trd_1791 88e6e988e6cc813250001550d0bdfa51 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 177 377 6.0E-27 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 trd_1791 88e6e988e6cc813250001550d0bdfa51 397 Gene3D G3DSA:2.30.130.10 3 73 4.2E-28 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 trd_A0274 205f4041f1625a59fe891a37814b5a9d 299 TIGRFAM TIGR03878 thermo_KaiC_2: KaiC domain protein, AF_0795 family 25 283 3.7E-128 T 13-10-2018 IPR022373 KaiC domain-containing protein trd_A0274 205f4041f1625a59fe891a37814b5a9d 299 Pfam PF06745 KaiC 28 281 1.9E-53 T 13-10-2018 IPR014774 KaiC-like domain trd_A0274 205f4041f1625a59fe891a37814b5a9d 299 Gene3D G3DSA:3.40.50.300 19 278 2.9E-32 T 13-10-2018 trd_A0274 205f4041f1625a59fe891a37814b5a9d 299 SUPERFAMILY SSF52540 25 278 3.99E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0181 262f7964013c4d09f5a883d2a65b706b 231 Gene3D G3DSA:2.30.30.240 4 76 1.5E-6 T 13-10-2018 trd_A0181 262f7964013c4d09f5a883d2a65b706b 231 SUPERFAMILY SSF50346 5 91 6.08E-11 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_A0181 262f7964013c4d09f5a883d2a65b706b 231 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 159 226 2.1E-18 T 13-10-2018 IPR018684 Protein of unknown function DUF2171 trd_A0181 262f7964013c4d09f5a883d2a65b706b 231 SUPERFAMILY SSF50346 161 216 1.22E-8 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_A0181 262f7964013c4d09f5a883d2a65b706b 231 Pfam PF05239 PRC-barrel domain 6 50 2.3E-7 T 13-10-2018 IPR027275 PRC-barrel domain trd_1892 28e586352758cba0d1ffaca131f20739 424 Pfam PF00534 Glycosyl transferases group 1 195 349 1.3E-25 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_1892 28e586352758cba0d1ffaca131f20739 424 Gene3D G3DSA:3.40.50.2000 44 375 1.7E-90 T 13-10-2018 trd_1892 28e586352758cba0d1ffaca131f20739 424 SUPERFAMILY SSF53756 42 376 4.52E-65 T 13-10-2018 trd_1892 28e586352758cba0d1ffaca131f20739 424 Pfam PF13579 Glycosyl transferase 4-like domain 51 158 1.5E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_1892 28e586352758cba0d1ffaca131f20739 424 Gene3D G3DSA:3.40.50.2000 190 369 1.7E-90 T 13-10-2018 trd_0598 7ab6e7e9ee895b497952ccfa98edf1e1 252 Gene3D G3DSA:1.10.3720.10 44 241 9.6E-28 T 13-10-2018 IPR035906 MetI-like superfamily trd_0598 7ab6e7e9ee895b497952ccfa98edf1e1 252 SUPERFAMILY SSF161098 49 229 7.33E-34 T 13-10-2018 IPR035906 MetI-like superfamily trd_0598 7ab6e7e9ee895b497952ccfa98edf1e1 252 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 69 239 1.1E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0197 9b8aa4ef4d1c51cdd8164c2336f0c094 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 4 201 5.9E-56 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 trd_0197 9b8aa4ef4d1c51cdd8164c2336f0c094 213 SUPERFAMILY SSF51569 2 199 7.33E-60 T 13-10-2018 trd_0197 9b8aa4ef4d1c51cdd8164c2336f0c094 213 Gene3D G3DSA:3.20.20.70 1 207 1.4E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0197 9b8aa4ef4d1c51cdd8164c2336f0c094 213 Pfam PF01081 KDPG and KHG aldolase 4 191 2.1E-43 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 trd_1672 8111907279689887478bbd37e33b3917 320 Gene3D G3DSA:1.10.3720.10 90 319 1.7E-19 T 13-10-2018 IPR035906 MetI-like superfamily trd_1672 8111907279689887478bbd37e33b3917 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 317 1.3E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1672 8111907279689887478bbd37e33b3917 320 SUPERFAMILY SSF161098 97 302 1.87E-15 T 13-10-2018 IPR035906 MetI-like superfamily trd_1140 5981be616c3e9989995a8f7266c77fc1 173 Pfam PF04075 F420H(2)-dependent quinone reductase 37 121 3.1E-18 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 trd_1140 5981be616c3e9989995a8f7266c77fc1 173 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 38 124 1.7E-22 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 trd_1140 5981be616c3e9989995a8f7266c77fc1 173 Gene3D G3DSA:2.30.110.10 28 128 1.1E-19 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_1140 5981be616c3e9989995a8f7266c77fc1 173 SUPERFAMILY SSF50475 33 132 6.63E-6 T 13-10-2018 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Gene3D G3DSA:1.20.58.410 2 97 2.5E-7 T 13-10-2018 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Pfam PF03462 PCRF domain 15 208 4.0E-74 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 8 361 39.805 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Gene3D G3DSA:3.30.160.20 215 301 4.0E-101 T 13-10-2018 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Pfam PF00472 RF-1 domain 215 325 2.6E-41 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 SMART SM00937 69 183 6.3E-64 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 7 358 3.9E-158 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 232 248 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 SUPERFAMILY SSF75620 15 357 1.27E-135 T 13-10-2018 trd_0091 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Gene3D G3DSA:3.30.70.1660 116 346 4.0E-101 T 13-10-2018 trd_0100 db40bb57caea29d2a9b81280ae7bf74c 648 Gene3D G3DSA:1.10.287.950 268 549 5.7E-47 T 13-10-2018 trd_0100 db40bb57caea29d2a9b81280ae7bf74c 648 SMART SM00283 290 572 9.3E-29 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_0100 db40bb57caea29d2a9b81280ae7bf74c 648 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 462 2.5E-26 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_0100 db40bb57caea29d2a9b81280ae7bf74c 648 SUPERFAMILY SSF58104 278 545 4.91E-48 T 13-10-2018 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 Gene3D G3DSA:3.90.1150.10 312 456 8.0E-53 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 Gene3D G3DSA:3.40.50.720 486 615 1.0E-35 T 13-10-2018 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 SMART SM00881 486 579 2.3E-23 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 221 235 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 Gene3D G3DSA:3.40.640.10 27 308 1.1E-107 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 SUPERFAMILY SSF53383 28 445 7.63E-133 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 28 444 2.1E-200 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 SUPERFAMILY SSF51735 492 607 1.58E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 29 444 1.0E-149 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_A0827 b23853bd40b2ef5741e279fe129e4f75 639 Pfam PF13380 CoA binding domain 494 604 5.4E-34 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_0907 70981b464a6101de0bc7cea98d8eb88b 483 SMART SM00854 181 421 5.5E-83 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA trd_0907 70981b464a6101de0bc7cea98d8eb88b 483 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 181 421 2.6E-67 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA trd_0907 70981b464a6101de0bc7cea98d8eb88b 483 SUPERFAMILY SSF56300 181 460 1.19E-34 T 13-10-2018 trd_A0912 9a21fadf3fae832f5899e6a84318ea64 193 SUPERFAMILY SSF50475 11 175 8.27E-49 T 13-10-2018 trd_A0912 9a21fadf3fae832f5899e6a84318ea64 193 Gene3D G3DSA:2.30.110.10 4 193 2.3E-55 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_A0912 9a21fadf3fae832f5899e6a84318ea64 193 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 21 167 4.5E-40 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related trd_A0752 9b12667b4e5ae89df578380270547209 440 Gene3D G3DSA:3.40.640.10 70 323 1.2E-150 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0752 9b12667b4e5ae89df578380270547209 440 PIRSF PIRSF000521 13 135 0.18 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0752 9b12667b4e5ae89df578380270547209 440 PIRSF PIRSF000521 117 430 1.9E-13 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0752 9b12667b4e5ae89df578380270547209 440 Gene3D G3DSA:3.90.1150.10 12 423 1.2E-150 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0752 9b12667b4e5ae89df578380270547209 440 Pfam PF00202 Aminotransferase class-III 34 426 1.2E-64 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0752 9b12667b4e5ae89df578380270547209 440 SUPERFAMILY SSF53383 7 428 1.41E-109 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0752 9b12667b4e5ae89df578380270547209 440 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 271 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 3.1E-47 T 13-10-2018 trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 SUPERFAMILY SSF51735 5 254 3.79E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 Gene3D G3DSA:3.40.50.720 1 271 1.0E-64 T 13-10-2018 trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0932 c1324db81cb56f9cc711721d27a3702d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0177 f942c98efebfc63386771262c4a11c0c 307 ProSitePatterns PS00161 Isocitrate lyase signature. 126 131 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 trd_A0177 f942c98efebfc63386771262c4a11c0c 307 Gene3D G3DSA:3.20.20.60 1 301 3.7E-100 T 13-10-2018 trd_A0177 f942c98efebfc63386771262c4a11c0c 307 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 16 295 1.9E-108 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 trd_A0177 f942c98efebfc63386771262c4a11c0c 307 SUPERFAMILY SSF51621 10 294 2.42E-87 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_A0177 f942c98efebfc63386771262c4a11c0c 307 Pfam PF13714 Phosphoenolpyruvate phosphomutase 25 257 2.5E-47 T 13-10-2018 trd_1605 916595fc196e74770b129ceabf4a3348 474 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 14 474 5.5E-171 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 trd_1605 916595fc196e74770b129ceabf4a3348 474 Pfam PF07724 AAA domain (Cdc48 subfamily) 221 360 5.0E-36 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1605 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:3.40.50.300 12 156 3.7E-32 T 13-10-2018 trd_1605 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:1.10.8.60 366 471 5.4E-37 T 13-10-2018 trd_1605 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:1.10.8.10 259 278 1.6E-24 T 13-10-2018 trd_1605 916595fc196e74770b129ceabf4a3348 474 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 63 112 2.3E-6 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_1605 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:3.40.50.300 229 341 1.6E-24 T 13-10-2018 trd_1605 916595fc196e74770b129ceabf4a3348 474 SMART SM01086 366 460 9.1E-18 T 13-10-2018 IPR019489 Clp ATPase, C-terminal trd_1605 916595fc196e74770b129ceabf4a3348 474 SMART SM00382 59 367 2.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1605 916595fc196e74770b129ceabf4a3348 474 SUPERFAMILY SSF52540 14 470 6.62E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0881 8fe5ef9fe603d8ff4f28f59d8e345d21 334 Pfam PF00589 Phage integrase family 152 310 1.2E-33 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 trd_A0881 8fe5ef9fe603d8ff4f28f59d8e345d21 334 Gene3D G3DSA:1.10.150.130 1 114 7.0E-8 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal trd_A0881 8fe5ef9fe603d8ff4f28f59d8e345d21 334 Gene3D G3DSA:1.10.443.10 127 324 1.1E-44 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 trd_A0881 8fe5ef9fe603d8ff4f28f59d8e345d21 334 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 11 96 1.5E-6 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 trd_A0881 8fe5ef9fe603d8ff4f28f59d8e345d21 334 SUPERFAMILY SSF56349 3 316 7.36E-43 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_1851 ec258b59d1ec527125401f20ebffa83d 353 SUPERFAMILY SSF53187 5 343 3.67E-61 T 13-10-2018 trd_1851 ec258b59d1ec527125401f20ebffa83d 353 Gene3D G3DSA:2.40.30.40 70 161 8.7E-109 T 13-10-2018 IPR023367 Peptidase M42, domain 2 trd_1851 ec258b59d1ec527125401f20ebffa83d 353 Gene3D G3DSA:3.40.630.10 12 339 8.7E-109 T 13-10-2018 trd_1851 ec258b59d1ec527125401f20ebffa83d 353 SUPERFAMILY SSF101821 70 177 6.87E-29 T 13-10-2018 trd_1851 ec258b59d1ec527125401f20ebffa83d 353 Pfam PF05343 M42 glutamyl aminopeptidase 47 336 1.5E-84 T 13-10-2018 IPR008007 Peptidase M42 trd_1851 ec258b59d1ec527125401f20ebffa83d 353 PIRSF PIRSF001123 3 349 3.9E-98 T 13-10-2018 IPR008007 Peptidase M42 trd_1881 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 SMART SM00240 102 153 2.8E-12 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 trd_1881 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 Gene3D G3DSA:2.60.200.20 83 185 9.6E-27 T 13-10-2018 trd_1881 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 SUPERFAMILY SSF49879 79 177 2.49E-27 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 trd_1881 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 Pfam PF00498 FHA domain 104 167 3.6E-19 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 trd_1829 37fb6ea71be72e1c5f3aea84154ca031 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 21 270 2.2E-111 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 trd_1829 37fb6ea71be72e1c5f3aea84154ca031 270 Gene3D G3DSA:3.40.50.300 19 268 1.2E-62 T 13-10-2018 trd_1829 37fb6ea71be72e1c5f3aea84154ca031 270 SMART SM00382 45 257 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1829 37fb6ea71be72e1c5f3aea84154ca031 270 Pfam PF00005 ABC transporter 37 189 2.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1829 37fb6ea71be72e1c5f3aea84154ca031 270 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1829 37fb6ea71be72e1c5f3aea84154ca031 270 SUPERFAMILY SSF52540 20 264 1.57E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 SUPERFAMILY SSF56601 167 564 1.99E-94 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Gene3D G3DSA:3.30.450.330 217 554 1.0E-103 T 13-10-2018 trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Gene3D G3DSA:3.90.1310.30 45 215 3.2E-43 T 13-10-2018 trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Gene3D G3DSA:3.40.710.10 278 472 1.0E-103 T 13-10-2018 trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Pfam PF00905 Penicillin binding protein transpeptidase domain 241 550 3.7E-78 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 SUPERFAMILY SSF56519 49 215 6.41E-39 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 trd_0058 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Pfam PF03717 Penicillin-binding Protein dimerisation domain 52 197 1.6E-16 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 trd_0109 8b6582203e7fd8d52a6b32eae6765733 138 Gene3D G3DSA:3.30.1330.40 3 128 2.2E-46 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 trd_0109 8b6582203e7fd8d52a6b32eae6765733 138 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 10 119 4.0E-33 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 trd_0109 8b6582203e7fd8d52a6b32eae6765733 138 Pfam PF07736 Chorismate mutase type I 4 118 5.6E-46 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 trd_0109 8b6582203e7fd8d52a6b32eae6765733 138 PIRSF PIRSF005965 2 124 2.7E-44 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 trd_0109 8b6582203e7fd8d52a6b32eae6765733 138 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 5 118 3.9E-42 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 trd_0109 8b6582203e7fd8d52a6b32eae6765733 138 SUPERFAMILY SSF55298 3 119 3.06E-43 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Gene3D G3DSA:1.20.120.1810 3 172 4.3E-45 T 13-10-2018 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 PRINTS PR00046 Major sigma-70 factor signature 296 311 1.1E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 PRINTS PR00046 Major sigma-70 factor signature 151 159 1.1E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 PRINTS PR00046 Major sigma-70 factor signature 127 140 1.1E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 PRINTS PR00046 Major sigma-70 factor signature 275 287 1.1E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 PRINTS PR00046 Major sigma-70 factor signature 311 322 1.1E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Gene3D G3DSA:1.10.10.10 176 251 4.9E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 127 140 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Gene3D G3DSA:1.10.10.10 253 332 5.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 296 322 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 98 324 9.5E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 SUPERFAMILY SSF88659 176 249 7.85E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Pfam PF04542 Sigma-70 region 2 103 172 1.4E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Pfam PF04539 Sigma-70 region 3 183 254 1.2E-16 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Pfam PF00140 Sigma-70 factor, region 1.2 43 75 1.1E-8 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 SUPERFAMILY SSF88659 234 324 3.92E-26 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 SUPERFAMILY SSF88946 42 173 3.4E-45 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0605 7090e17a08346085e14d9c7e391cb8d5 334 Pfam PF04545 Sigma-70, region 4 272 324 7.7E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 trd_A0602 600102370eef5e04e5a73af3fb746a66 346 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 218 1.9E-60 T 13-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 trd_A0602 600102370eef5e04e5a73af3fb746a66 346 Gene3D G3DSA:1.10.1760.20 1 217 1.0E-68 T 13-10-2018 trd_A0602 600102370eef5e04e5a73af3fb746a66 346 ProDom PD074023 BIOSYNTHESIS COBALAMIN CBIM COBALT PRECURSOR SIGNAL NICKEL MEMBRANE ABC PROTEIN 251 328 5.0E-13 T 13-10-2018 IPR020486 Probable fused nickel transport protein LarMN-like trd_A0602 600102370eef5e04e5a73af3fb746a66 346 Pfam PF13190 PDGLE domain 242 328 3.0E-9 T 13-10-2018 IPR025937 PDGLE domain trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 SUPERFAMILY SSF81653 106 149 1.07E-13 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 Pfam PF00690 Cation transporter/ATPase, N-terminus 12 60 1.2E-11 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 Pfam PF00122 E1-E2 ATPase 106 149 1.4E-12 T 13-10-2018 trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 Gene3D G3DSA:1.20.1110.10 46 101 4.9E-37 T 13-10-2018 trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 SUPERFAMILY SSF81665 11 107 2.35E-21 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 SMART SM00831 4 68 3.2E-10 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_1449 3b0a596650dfd80be5ed912e80fa7bb2 152 Gene3D G3DSA:2.70.150.10 13 151 4.9E-37 T 13-10-2018 trd_A0398 d265b39b5189d2dba9aa1d98dc939da2 429 SUPERFAMILY SSF57997 53 293 9.15E-16 T 13-10-2018 trd_A0398 d265b39b5189d2dba9aa1d98dc939da2 429 Gene3D G3DSA:1.20.5.340 214 297 4.6E-9 T 13-10-2018 trd_A0398 d265b39b5189d2dba9aa1d98dc939da2 429 Pfam PF09728 Myosin-like coiled-coil protein 87 297 9.5E-8 T 13-10-2018 IPR026183 Taxilin family GO:0019905 trd_A0398 d265b39b5189d2dba9aa1d98dc939da2 429 Gene3D G3DSA:1.20.5.170 34 146 2.5E-5 T 13-10-2018 trd_A0398 d265b39b5189d2dba9aa1d98dc939da2 429 Gene3D G3DSA:1.20.5.170 147 213 1.2E-8 T 13-10-2018 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 16 482 6.9E-148 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 Pfam PF08323 Starch synthase catalytic domain 16 247 4.7E-59 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 Gene3D G3DSA:3.40.50.2000 16 481 1.9E-154 T 13-10-2018 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 Hamap MF_00484 Glycogen synthase [glgA]. 14 483 39.766 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 Pfam PF00534 Glycosyl transferases group 1 303 454 3.0E-11 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 SUPERFAMILY SSF53756 10 486 7.07E-106 T 13-10-2018 trd_1258 ed77fb5003f1b0c25d16f515de761573 496 Gene3D G3DSA:3.40.50.2000 261 467 1.9E-154 T 13-10-2018 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PIRSF PIRSF019574 52 392 1.8E-99 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 Gene3D G3DSA:3.40.190.10 74 360 3.0E-107 T 13-10-2018 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 SUPERFAMILY SSF53850 69 392 8.28E-82 T 13-10-2018 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 134 147 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 118 132 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 165 181 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 112 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 190 204 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 291 310 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 338 364 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 210 229 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 91 1.8E-37 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 Gene3D G3DSA:3.40.190.10 174 388 3.0E-107 T 13-10-2018 trd_1145 a1dc816f9879eed2f3a949f007d5393a 392 Pfam PF13416 Bacterial extracellular solute-binding protein 85 359 2.7E-32 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_A0898 4f525088c650404c323c2bb94a334962 286 Gene3D G3DSA:3.20.20.370 2 271 7.7E-87 T 13-10-2018 trd_A0898 4f525088c650404c323c2bb94a334962 286 SUPERFAMILY SSF88713 3 266 3.71E-65 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_A0898 4f525088c650404c323c2bb94a334962 286 Pfam PF01522 Polysaccharide deacetylase 11 151 1.7E-23 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 SMART SM00422 236 305 0.0047 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 Gene3D G3DSA:1.10.1660.10 224 347 3.6E-14 T 13-10-2018 trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 Gene3D G3DSA:1.10.150.130 11 92 1.2E-14 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 Pfam PF13411 MerR HTH family regulatory protein 237 298 2.0E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 SUPERFAMILY SSF56349 11 221 8.83E-14 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 SUPERFAMILY SSF46955 236 343 2.24E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_0052 4bfdd73cda2550c44b7bd7f119af240e 357 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 20 84 1.3E-11 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 trd_1951 114c1563ddc2360210eb2289e7b6e7ef 334 SUPERFAMILY SSF161098 100 313 2.83E-10 T 13-10-2018 IPR035906 MetI-like superfamily trd_1951 114c1563ddc2360210eb2289e7b6e7ef 334 Gene3D G3DSA:1.10.3720.10 96 324 6.3E-15 T 13-10-2018 IPR035906 MetI-like superfamily trd_1951 114c1563ddc2360210eb2289e7b6e7ef 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 330 2.3E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0737 8c9b43e44517cf14ca3d1abc489467e0 415 SUPERFAMILY SSF109604 195 405 2.32E-39 T 13-10-2018 trd_A0737 8c9b43e44517cf14ca3d1abc489467e0 415 SUPERFAMILY SSF141868 5 211 2.88E-6 T 13-10-2018 IPR035919 EAL domain superfamily trd_A0737 8c9b43e44517cf14ca3d1abc489467e0 415 Gene3D G3DSA:1.10.3210.10 212 337 5.4E-27 T 13-10-2018 trd_A0737 8c9b43e44517cf14ca3d1abc489467e0 415 Pfam PF08668 HDOD domain 216 331 1.2E-19 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD trd_A0737 8c9b43e44517cf14ca3d1abc489467e0 415 PIRSF PIRSF003180 3 411 4.2E-71 T 13-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing trd_A0136 fde53f7dce5f497eed9f4af8e006e043 246 SUPERFAMILY SSF88713 49 180 6.67E-14 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_A0136 fde53f7dce5f497eed9f4af8e006e043 246 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 5 212 6.0E-21 T 13-10-2018 IPR018763 Protein of unknown function DUF2334 trd_A0136 fde53f7dce5f497eed9f4af8e006e043 246 Gene3D G3DSA:3.20.20.370 7 238 1.7E-14 T 13-10-2018 trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 SUPERFAMILY SSF48008 107 238 6.02E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 SMART SM00895 109 231 1.0E-24 T 13-10-2018 IPR011711 GntR, C-terminal trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 Gene3D G3DSA:1.10.10.10 7 81 4.0E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 Gene3D G3DSA:1.20.120.530 98 238 5.4E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 SMART SM00345 21 80 1.3E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 8.0E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 4.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 4.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 SUPERFAMILY SSF46785 12 84 2.09E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0153 d70c49173f40ae62865a9cebf3e77d70 259 Pfam PF07729 FCD domain 109 230 1.9E-28 T 13-10-2018 IPR011711 GntR, C-terminal trd_0846 7cded0a7d4a7368549ea25119298f75d 175 Pfam PF01551 Peptidase family M23 18 109 7.7E-18 T 13-10-2018 IPR016047 Peptidase M23 trd_0846 7cded0a7d4a7368549ea25119298f75d 175 Gene3D G3DSA:2.70.70.10 1 125 1.6E-23 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_0846 7cded0a7d4a7368549ea25119298f75d 175 SUPERFAMILY SSF51261 4 120 1.83E-22 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_A0002 76ade4c00baf9b1454ebd80263c02c4e 490 Pfam PF00171 Aldehyde dehydrogenase family 17 483 3.5E-174 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 trd_A0002 76ade4c00baf9b1454ebd80263c02c4e 490 SUPERFAMILY SSF53720 5 487 1.44E-171 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 trd_A0002 76ade4c00baf9b1454ebd80263c02c4e 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 trd_A0002 76ade4c00baf9b1454ebd80263c02c4e 490 Gene3D G3DSA:3.40.309.10 257 455 3.0E-176 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 trd_A0002 76ade4c00baf9b1454ebd80263c02c4e 490 Gene3D G3DSA:3.40.605.10 23 482 3.0E-176 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 trd_A0002 76ade4c00baf9b1454ebd80263c02c4e 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 trd_0332 ad02af9960eae64a6699fa68f20b181f 137 Gene3D G3DSA:1.20.1300.10 14 123 8.5E-22 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0332 ad02af9960eae64a6699fa68f20b181f 137 SUPERFAMILY SSF81343 15 131 3.27E-23 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0332 ad02af9960eae64a6699fa68f20b181f 137 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 5 115 5.0E-13 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00097 Anthranilate synthase component II signature 339 352 8.7E-9 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00097 Anthranilate synthase component II signature 224 233 8.7E-9 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00097 Anthranilate synthase component II signature 252 263 8.7E-9 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 7 368 44.874 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0213 33ce84d3825db1216e198652f8742808 383 SMART SM01097 7 137 1.3E-80 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0213 33ce84d3825db1216e198652f8742808 383 Gene3D G3DSA:3.50.30.20 7 149 4.4E-57 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00096 Glutamine amidotransferase superfamily signature 339 352 2.9E-12 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00096 Glutamine amidotransferase superfamily signature 252 263 2.9E-12 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00096 Glutamine amidotransferase superfamily signature 224 233 2.9E-12 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 10 365 1.1E-133 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0213 33ce84d3825db1216e198652f8742808 383 SUPERFAMILY SSF52021 10 146 6.93E-53 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0213 33ce84d3825db1216e198652f8742808 383 Pfam PF00117 Glutamine amidotransferase class-I 183 362 1.3E-44 T 13-10-2018 IPR017926 Glutamine amidotransferase trd_0213 33ce84d3825db1216e198652f8742808 383 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 10 136 6.1E-51 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 252 268 3.6E-35 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 182 196 3.6E-35 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 294 305 3.6E-35 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 221 235 3.6E-35 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 269 286 3.6E-35 T 13-10-2018 trd_0213 33ce84d3825db1216e198652f8742808 383 Gene3D G3DSA:3.40.50.880 150 367 4.7E-67 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0213 33ce84d3825db1216e198652f8742808 383 SUPERFAMILY SSF52317 170 367 4.09E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_A0769 f6c871562d9f16a34d749137d36a88d2 330 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 304 1.7E-80 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B trd_A0769 f6c871562d9f16a34d749137d36a88d2 330 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 323 2.4E-78 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B trd_A0769 f6c871562d9f16a34d749137d36a88d2 330 Gene3D G3DSA:2.40.100.10 183 329 3.2E-51 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily trd_A0769 f6c871562d9f16a34d749137d36a88d2 330 SUPERFAMILY SSF50891 184 311 1.37E-16 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily trd_A0769 f6c871562d9f16a34d749137d36a88d2 330 SMART SM00797 24 321 3.3E-123 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B trd_A0238 e570d6a7c58e47223ae9e191198af419 308 PRINTS PR01438 Universal stress protein signature 6 24 2.7E-10 T 13-10-2018 IPR006015 Universal stress protein A trd_A0238 e570d6a7c58e47223ae9e191198af419 308 PRINTS PR01438 Universal stress protein signature 277 299 2.7E-10 T 13-10-2018 IPR006015 Universal stress protein A trd_A0238 e570d6a7c58e47223ae9e191198af419 308 PRINTS PR01438 Universal stress protein signature 259 271 2.7E-10 T 13-10-2018 IPR006015 Universal stress protein A trd_A0238 e570d6a7c58e47223ae9e191198af419 308 Pfam PF00582 Universal stress protein family 157 299 5.4E-20 T 13-10-2018 IPR006016 UspA trd_A0238 e570d6a7c58e47223ae9e191198af419 308 Pfam PF00582 Universal stress protein family 8 143 1.5E-20 T 13-10-2018 IPR006016 UspA trd_A0238 e570d6a7c58e47223ae9e191198af419 308 SUPERFAMILY SSF52402 156 299 3.93E-28 T 13-10-2018 trd_A0238 e570d6a7c58e47223ae9e191198af419 308 Gene3D G3DSA:3.40.50.620 6 144 7.6E-28 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0238 e570d6a7c58e47223ae9e191198af419 308 Gene3D G3DSA:3.40.50.620 156 299 2.8E-28 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0238 e570d6a7c58e47223ae9e191198af419 308 SUPERFAMILY SSF52402 8 143 7.37E-25 T 13-10-2018 trd_A0393 1b1ba3c8ccffbc0697b48f2a050aa2a4 183 SUPERFAMILY SSF49503 74 182 5.47E-22 T 13-10-2018 IPR008972 Cupredoxin trd_A0393 1b1ba3c8ccffbc0697b48f2a050aa2a4 183 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 125 175 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0393 1b1ba3c8ccffbc0697b48f2a050aa2a4 183 Gene3D G3DSA:2.60.40.420 75 183 2.4E-25 T 13-10-2018 IPR008972 Cupredoxin trd_A0393 1b1ba3c8ccffbc0697b48f2a050aa2a4 183 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 112 176 2.9E-6 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1296 f0051c2ff27be8c96a69839bc2ecb697 432 Gene3D G3DSA:2.30.30.40 153 204 4.1E-6 T 13-10-2018 trd_1296 f0051c2ff27be8c96a69839bc2ecb697 432 Pfam PF08239 Bacterial SH3 domain 157 201 1.2E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0957 3d965d794817611ba5816d8cb7e55995 326 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 248 304 4.0E-5 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 249 300 1.6E-12 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 308 31.942 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:2.170.120.12 48 168 8.8E-82 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 SMART SM00662 18 225 4.3E-81 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:1.10.150.20 244 304 7.0E-16 T 13-10-2018 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 24 218 6.7E-22 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:3.30.1360.10 16 218 8.8E-82 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF55257 9 221 1.57E-28 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF47789 248 306 5.89E-12 T 13-10-2018 trd_0957 3d965d794817611ba5816d8cb7e55995 326 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 59 152 1.4E-19 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 18 303 2.5E-94 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_0957 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF56553 48 169 7.67E-40 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 trd_1701 9c9915521e79b43253698cf8a71ed57c 96 Pfam PF02609 Exonuclease VII small subunit 16 66 5.5E-19 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 trd_1701 9c9915521e79b43253698cf8a71ed57c 96 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 15 75 14.053 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 trd_1701 9c9915521e79b43253698cf8a71ed57c 96 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 16 54 2.0E-7 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 trd_1701 9c9915521e79b43253698cf8a71ed57c 96 Gene3D G3DSA:1.10.287.1040 10 78 2.6E-20 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 trd_1701 9c9915521e79b43253698cf8a71ed57c 96 SUPERFAMILY SSF116842 16 72 1.18E-16 T 13-10-2018 trd_1701 9c9915521e79b43253698cf8a71ed57c 96 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 16 69 1.3E-19 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 trd_0693 01716a7a9d203c42263c371f069cbf53 158 SUPERFAMILY SSF55653 59 149 9.16E-23 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily trd_0693 01716a7a9d203c42263c371f069cbf53 158 Pfam PF03948 Ribosomal protein L9, C-terminal domain 67 147 4.9E-22 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal trd_0693 01716a7a9d203c42263c371f069cbf53 158 SUPERFAMILY SSF55658 2 56 1.74E-15 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal trd_0693 01716a7a9d203c42263c371f069cbf53 158 Gene3D G3DSA:3.10.430.100 61 150 9.8E-24 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily trd_0693 01716a7a9d203c42263c371f069cbf53 158 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 2 149 22.964 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0693 01716a7a9d203c42263c371f069cbf53 158 ProSitePatterns PS00651 Ribosomal protein L9 signature. 14 41 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0693 01716a7a9d203c42263c371f069cbf53 158 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 45 4.0E-21 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0693 01716a7a9d203c42263c371f069cbf53 158 Gene3D G3DSA:3.40.5.10 2 60 5.1E-22 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0693 01716a7a9d203c42263c371f069cbf53 158 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 149 2.1E-37 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1179 c26bdcc84190a939d7dccc3ca0297d3d 163 SUPERFAMILY SSF159234 50 160 1.18E-16 T 13-10-2018 IPR035930 FomD-like superfamily trd_1179 c26bdcc84190a939d7dccc3ca0297d3d 163 Gene3D G3DSA:2.40.380.10 3 161 2.4E-11 T 13-10-2018 IPR035930 FomD-like superfamily trd_1179 c26bdcc84190a939d7dccc3ca0297d3d 163 Pfam PF04167 Protein of unknown function (DUF402) 61 125 5.1E-15 T 13-10-2018 IPR007295 Domain of unknown function DUF402 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 PIRSF PIRSF000089 4 327 1.1E-88 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 Pfam PF01012 Electron transfer flavoprotein domain 7 174 2.9E-31 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 202 285 2.0E-31 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 SUPERFAMILY SSF52402 6 183 1.74E-35 T 13-10-2018 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 SMART SM00893 6 193 4.7E-20 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 SUPERFAMILY SSF52467 200 322 2.18E-41 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 Gene3D G3DSA:3.40.50.1220 198 329 1.9E-48 T 13-10-2018 trd_0043 ebd9ee0a590fb63d6f533da298d29503 330 Gene3D G3DSA:3.40.50.620 4 197 1.7E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0566 9f06539a55a4d779f148468e7b1cf640 413 Gene3D G3DSA:1.20.1250.20 10 209 3.6E-18 T 13-10-2018 trd_0566 9f06539a55a4d779f148468e7b1cf640 413 SUPERFAMILY SSF103473 7 402 7.46E-38 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0566 9f06539a55a4d779f148468e7b1cf640 413 Pfam PF07690 Major Facilitator Superfamily 256 402 3.6E-8 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_0566 9f06539a55a4d779f148468e7b1cf640 413 Pfam PF07690 Major Facilitator Superfamily 48 249 8.7E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_0566 9f06539a55a4d779f148468e7b1cf640 413 Gene3D G3DSA:1.20.1250.20 225 403 1.9E-11 T 13-10-2018 trd_1642 9f2030cf602ef39ca822f6ffbd3bd7c5 594 SUPERFAMILY SSF101898 171 328 4.97E-5 T 13-10-2018 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 6 162 2.7E-60 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 SUPERFAMILY SSF55021 7 80 2.18E-20 T 13-10-2018 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 SUPERFAMILY SSF55021 82 165 2.14E-24 T 13-10-2018 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 7 80 1.0E-22 T 13-10-2018 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 Pfam PF10369 Small subunit of acetolactate synthase 88 162 2.9E-28 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 Pfam PF13710 ACT domain 15 77 3.1E-17 T 13-10-2018 trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 Gene3D G3DSA:3.30.70.1150 87 167 6.6E-29 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal trd_0626 d40eedb9b18f44e5d070e0ab3beb60a5 175 Gene3D G3DSA:3.30.70.260 3 83 2.1E-33 T 13-10-2018 trd_A0732 ff7d6639a647a86c4a44a5970d50d36f 105 Gene3D G3DSA:3.40.50.720 1 105 9.1E-22 T 13-10-2018 trd_A0732 ff7d6639a647a86c4a44a5970d50d36f 105 Pfam PF13460 NAD(P)H-binding 1 90 2.9E-9 T 13-10-2018 IPR016040 NAD(P)-binding domain trd_A0732 ff7d6639a647a86c4a44a5970d50d36f 105 SUPERFAMILY SSF51735 1 104 1.01E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1936 541841a764fbbeed69b9780c8157ff2a 459 Gene3D G3DSA:3.40.1190.10 51 313 4.0E-40 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_1936 541841a764fbbeed69b9780c8157ff2a 459 Pfam PF08245 Mur ligase middle domain 57 197 1.7E-13 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_1936 541841a764fbbeed69b9780c8157ff2a 459 Pfam PF08353 Domain of unknown function (DUF1727) 331 440 7.4E-28 T 13-10-2018 IPR013564 Domain of unknown function DUF1727 trd_1936 541841a764fbbeed69b9780c8157ff2a 459 SUPERFAMILY SSF53623 54 309 1.05E-34 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 Gene3D G3DSA:3.40.50.720 2 256 6.5E-86 T 13-10-2018 trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0429 e165febfb60992a85753af01d95dde2f 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 3.6E-74 T 13-10-2018 trd_A0429 e165febfb60992a85753af01d95dde2f 260 SUPERFAMILY SSF51735 7 253 1.14E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 SUPERFAMILY SSF52540 322 679 5.25E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 400 409 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 Pfam PF00271 Helicase conserved C-terminal domain 610 666 2.2E-9 T 13-10-2018 IPR001650 Helicase, C-terminal trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 Pfam PF00270 DEAD/DEAH box helicase 284 450 2.9E-16 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 SMART SM00487 276 483 2.5E-23 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 SMART SM00490 547 667 5.2E-14 T 13-10-2018 IPR001650 Helicase, C-terminal trd_A0390 2f7bb9a8e222ffc163d86f6af27af0f2 1143 Gene3D G3DSA:3.40.50.300 262 471 6.8E-62 T 13-10-2018 trd_A0653 f4513501595047892aa80521dc049d87 151 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site trd_A0653 f4513501595047892aa80521dc049d87 151 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 100 147 7.7E-10 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain trd_A0653 f4513501595047892aa80521dc049d87 151 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 150 3.9E-47 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 trd_A0653 f4513501595047892aa80521dc049d87 151 Pfam PF00460 Flagella basal body rod protein 7 34 1.2E-10 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 trd_A0452 c3c00b04307344765098858ee10dc0c0 421 SUPERFAMILY SSF53383 40 420 1.32E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0452 c3c00b04307344765098858ee10dc0c0 421 Gene3D G3DSA:3.90.1150.10 61 416 4.3E-136 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0452 c3c00b04307344765098858ee10dc0c0 421 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 268 281 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 trd_A0452 c3c00b04307344765098858ee10dc0c0 421 Pfam PF00155 Aminotransferase class I and II 68 415 9.8E-69 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_A0452 c3c00b04307344765098858ee10dc0c0 421 Gene3D G3DSA:3.40.640.10 98 318 4.3E-136 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1103 2efb54e31c37691463b93ec7e5a2b8f3 464 Gene3D G3DSA:3.40.640.10 76 350 4.9E-156 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1103 2efb54e31c37691463b93ec7e5a2b8f3 464 Gene3D G3DSA:3.90.1150.10 23 451 4.9E-156 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1103 2efb54e31c37691463b93ec7e5a2b8f3 464 SUPERFAMILY SSF53383 24 453 8.29E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1103 2efb54e31c37691463b93ec7e5a2b8f3 464 Pfam PF00202 Aminotransferase class-III 41 451 4.1E-108 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1103 2efb54e31c37691463b93ec7e5a2b8f3 464 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 262 299 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1103 2efb54e31c37691463b93ec7e5a2b8f3 464 PIRSF PIRSF000521 34 454 2.3E-39 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1058 58b339552a4c559370e35c26ee3876a7 383 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 3 363 34.316 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 trd_1058 58b339552a4c559370e35c26ee3876a7 383 Pfam PF04551 GcpE protein 8 359 5.6E-133 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 trd_1058 58b339552a4c559370e35c26ee3876a7 383 PIRSF PIRSF004640 1 369 7.9E-143 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 trd_1058 58b339552a4c559370e35c26ee3876a7 383 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 5 355 2.4E-125 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 trd_1058 58b339552a4c559370e35c26ee3876a7 383 SUPERFAMILY SSF56014 272 367 4.97E-13 T 13-10-2018 trd_1058 58b339552a4c559370e35c26ee3876a7 383 Gene3D G3DSA:3.30.413.10 268 367 2.4E-35 T 13-10-2018 trd_1058 58b339552a4c559370e35c26ee3876a7 383 Gene3D G3DSA:3.20.20.20 1 267 3.9E-106 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 trd_1058 58b339552a4c559370e35c26ee3876a7 383 SUPERFAMILY SSF51717 13 214 2.12E-8 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 trd_0012 93f505a575524279921b986f613a686f 270 Pfam PF12679 ABC-2 family transporter protein 4 267 2.1E-15 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 trd_1507 86acaf3d98281c11666e5cb8902cf8d1 166 Pfam PF02464 Competence-damaged protein 5 156 5.4E-60 T 13-10-2018 IPR008136 CinA, C-terminal trd_1507 86acaf3d98281c11666e5cb8902cf8d1 166 SUPERFAMILY SSF142433 4 157 1.29E-56 T 13-10-2018 IPR036653 CinA-like, C-terminal trd_1507 86acaf3d98281c11666e5cb8902cf8d1 166 Gene3D G3DSA:3.90.950.20 2 160 3.0E-59 T 13-10-2018 IPR036653 CinA-like, C-terminal trd_1507 86acaf3d98281c11666e5cb8902cf8d1 166 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 154 2.5E-47 T 13-10-2018 IPR008136 CinA, C-terminal trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 6 25 1.9E-26 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.9E-26 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.9E-26 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.9E-26 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.9E-26 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 6 175 3.4E-41 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 175 3.0E-50 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 Gene3D G3DSA:1.10.520.20 3 105 3.5E-17 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 177 20.57 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 SUPERFAMILY SSF47928 3 106 2.35E-23 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1231 8390996e2304a2d6a2cbc0160b97153f 180 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_0376 a8c883c4fb5a9e4c9ac118bd0ecfbc7c 137 Pfam PF01883 Iron-sulfur cluster assembly protein 37 113 1.7E-17 T 13-10-2018 IPR002744 MIP18 family-like trd_0376 a8c883c4fb5a9e4c9ac118bd0ecfbc7c 137 Gene3D G3DSA:3.30.300.130 31 136 7.5E-35 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_0376 a8c883c4fb5a9e4c9ac118bd0ecfbc7c 137 SUPERFAMILY SSF117916 32 135 3.01E-31 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_0445 e46460e2bf424d7a2531e0513c241d24 74 Pfam PF11146 Protein of unknown function (DUF2905) 8 71 2.5E-23 T 13-10-2018 IPR021320 Protein of unknown function DUF2905 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 279 29.347 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 202 231 4.1E-48 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 153 173 4.1E-48 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 108 129 4.1E-48 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 73 100 4.1E-48 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 32 54 4.1E-48 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 252 270 4.1E-48 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 SUPERFAMILY SSF53223 1 143 1.44E-15 T 13-10-2018 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Gene3D G3DSA:3.40.50.720 6 255 8.7E-79 T 13-10-2018 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Gene3D G3DSA:3.40.50.10860 8 272 8.7E-79 T 13-10-2018 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 119 7.0E-16 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 126 274 1.6E-53 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0733 fd9698e2ba73f16aa6ee43643cb0bdf3 288 SUPERFAMILY SSF51735 125 275 6.37E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 275 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 PIRSF PIRSF000521 116 424 3.3E-52 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 PIRSF PIRSF000521 10 123 4.3E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 SUPERFAMILY SSF53383 17 422 7.98E-141 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Gene3D G3DSA:3.90.1150.10 12 419 2.0E-168 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Pfam PF00202 Aminotransferase class-III 21 421 6.5E-135 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1458 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Gene3D G3DSA:3.40.640.10 55 320 2.0E-168 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0330 5a74adad402c6fdb978237156ac435b0 538 Gene3D G3DSA:3.30.300.310 410 514 2.1E-30 T 13-10-2018 trd_A0330 5a74adad402c6fdb978237156ac435b0 538 Gene3D G3DSA:3.40.50.12780 2 407 3.7E-99 T 13-10-2018 trd_A0330 5a74adad402c6fdb978237156ac435b0 538 Pfam PF00501 AMP-binding enzyme 11 414 9.3E-90 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_A0330 5a74adad402c6fdb978237156ac435b0 538 SUPERFAMILY SSF56801 5 511 2.22E-136 T 13-10-2018 trd_A0330 5a74adad402c6fdb978237156ac435b0 538 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_A0330 5a74adad402c6fdb978237156ac435b0 538 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 501 5.0E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_0201 4f3eeda4bd6fd667fccaac68a52d95b5 210 Pfam PF02223 Thymidylate kinase 7 194 5.8E-55 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 trd_0201 4f3eeda4bd6fd667fccaac68a52d95b5 210 Hamap MF_00165 Thymidylate kinase [tmk]. 3 203 30.859 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 trd_0201 4f3eeda4bd6fd667fccaac68a52d95b5 210 SUPERFAMILY SSF52540 4 205 3.76E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0201 4f3eeda4bd6fd667fccaac68a52d95b5 210 ProSitePatterns PS01331 Thymidylate kinase signature. 90 102 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 trd_0201 4f3eeda4bd6fd667fccaac68a52d95b5 210 Gene3D G3DSA:3.40.50.300 2 207 1.6E-72 T 13-10-2018 trd_0201 4f3eeda4bd6fd667fccaac68a52d95b5 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 194 1.3E-53 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 trd_1267 c38a9d668048799ec9e8282bb554bbab 469 Gene3D G3DSA:3.90.226.10 27 252 7.3E-64 T 13-10-2018 trd_1267 c38a9d668048799ec9e8282bb554bbab 469 SUPERFAMILY SSF52096 31 201 7.05E-29 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_1267 c38a9d668048799ec9e8282bb554bbab 469 Pfam PF01957 NfeD-like C-terminal, partner-binding 302 440 6.5E-32 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain trd_1267 c38a9d668048799ec9e8282bb554bbab 469 SUPERFAMILY SSF141322 373 439 6.8E-13 T 13-10-2018 trd_1267 c38a9d668048799ec9e8282bb554bbab 469 Gene3D G3DSA:2.40.50.140 378 449 6.3E-22 T 13-10-2018 trd_1852 e008bc659fea56a723d7771277f89c9e 333 Gene3D G3DSA:3.40.50.720 27 321 5.2E-107 T 13-10-2018 trd_1852 e008bc659fea56a723d7771277f89c9e 333 Gene3D G3DSA:3.40.50.720 111 295 5.2E-107 T 13-10-2018 trd_1852 e008bc659fea56a723d7771277f89c9e 333 SUPERFAMILY SSF52283 39 145 1.19E-30 T 13-10-2018 trd_1852 e008bc659fea56a723d7771277f89c9e 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 122 294 2.1E-61 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 trd_1852 e008bc659fea56a723d7771277f89c9e 333 SUPERFAMILY SSF51735 113 295 4.58E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1852 e008bc659fea56a723d7771277f89c9e 333 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 205 227 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site trd_1852 e008bc659fea56a723d7771277f89c9e 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 25 326 4.6E-33 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 trd_A0059 aa87f7e8c567f65ece4ab03d017229f2 295 Pfam PF03916 Polysulphide reductase, NrfD 11 292 9.5E-17 T 13-10-2018 IPR005614 NrfD family trd_A0469 e4db86429286fbb706a79d3f8ef699b0 337 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 328 7.4E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0469 e4db86429286fbb706a79d3f8ef699b0 337 Gene3D G3DSA:1.10.3720.10 70 335 1.1E-64 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0469 e4db86429286fbb706a79d3f8ef699b0 337 SUPERFAMILY SSF161098 74 323 1.96E-51 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0138 4461a70bf78b6e9a66ed253fdfe904c1 237 SUPERFAMILY SSF53448 8 224 1.03E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0138 4461a70bf78b6e9a66ed253fdfe904c1 237 Gene3D G3DSA:3.90.550.10 4 207 4.6E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0138 4461a70bf78b6e9a66ed253fdfe904c1 237 Pfam PF00535 Glycosyl transferase family 2 11 141 1.4E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_0343 fc81505d89f9f9931ad46ecb1ef16c9e 306 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 93 297 2.9E-59 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 trd_0343 fc81505d89f9f9931ad46ecb1ef16c9e 306 PIRSF PIRSF000401 3 305 6.1E-73 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 trd_0343 fc81505d89f9f9931ad46ecb1ef16c9e 306 SUPERFAMILY SSF53335 88 302 3.14E-46 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0343 fc81505d89f9f9931ad46ecb1ef16c9e 306 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 4 303 8.5E-74 T 13-10-2018 trd_0343 fc81505d89f9f9931ad46ecb1ef16c9e 306 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 5 303 31.603 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 trd_0343 fc81505d89f9f9931ad46ecb1ef16c9e 306 Gene3D G3DSA:3.40.50.150 107 305 4.7E-59 T 13-10-2018 trd_0435 40e83568a26325b34624742c049fecd2 360 Pfam PF00155 Aminotransferase class I and II 36 356 9.7E-55 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_0435 40e83568a26325b34624742c049fecd2 360 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 357 1.1E-100 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 trd_0435 40e83568a26325b34624742c049fecd2 360 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 360 57.218 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 trd_0435 40e83568a26325b34624742c049fecd2 360 SUPERFAMILY SSF53383 18 358 1.13E-87 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0435 40e83568a26325b34624742c049fecd2 360 Gene3D G3DSA:3.40.640.10 49 266 2.0E-108 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0435 40e83568a26325b34624742c049fecd2 360 Gene3D G3DSA:3.90.1150.10 32 353 2.0E-108 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0370 84159baa1e624d42e551b8e28da48fa3 736 SUPERFAMILY SSF82866 111 331 2.35E-27 T 13-10-2018 trd_0370 84159baa1e624d42e551b8e28da48fa3 736 Pfam PF03176 MMPL family 45 360 8.2E-54 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 trd_0370 84159baa1e624d42e551b8e28da48fa3 736 Pfam PF03176 MMPL family 389 725 1.6E-35 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 trd_0370 84159baa1e624d42e551b8e28da48fa3 736 SUPERFAMILY SSF82866 495 720 1.31E-25 T 13-10-2018 trd_0657 c4869fdc050fff4ab5151f8db02a9791 370 SUPERFAMILY SSF53756 8 363 2.04E-69 T 13-10-2018 trd_0657 c4869fdc050fff4ab5151f8db02a9791 370 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 79 302 3.7E-31 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 trd_0657 c4869fdc050fff4ab5151f8db02a9791 370 Gene3D G3DSA:3.40.50.2000 4 163 6.4E-20 T 13-10-2018 trd_0657 c4869fdc050fff4ab5151f8db02a9791 370 Gene3D G3DSA:3.40.50.2000 174 366 3.2E-41 T 13-10-2018 trd_A0935 519272b37352774f9f04384046d90ff1 321 TIGRFAM TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 10 312 7.0E-106 T 13-10-2018 IPR011981 3,4-dihydroxyphenylacetate 2,3-dioxygenase, Mn/Fe-type trd_A0935 519272b37352774f9f04384046d90ff1 321 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 250 271 - T 13-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 trd_A0935 519272b37352774f9f04384046d90ff1 321 Gene3D G3DSA:3.10.180.10 2 139 4.8E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0935 519272b37352774f9f04384046d90ff1 321 SUPERFAMILY SSF54593 5 298 1.17E-46 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0935 519272b37352774f9f04384046d90ff1 321 Gene3D G3DSA:3.10.180.10 157 314 5.9E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0935 519272b37352774f9f04384046d90ff1 321 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 157 272 6.2E-14 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0935 519272b37352774f9f04384046d90ff1 321 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 123 4.7E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_1976 c4cd50e209c7f30e430c6bb1971e2570 141 PRINTS PR01438 Universal stress protein signature 118 140 5.5E-17 T 13-10-2018 IPR006015 Universal stress protein A trd_1976 c4cd50e209c7f30e430c6bb1971e2570 141 PRINTS PR01438 Universal stress protein signature 2 20 5.5E-17 T 13-10-2018 IPR006015 Universal stress protein A trd_1976 c4cd50e209c7f30e430c6bb1971e2570 141 PRINTS PR01438 Universal stress protein signature 100 112 5.5E-17 T 13-10-2018 IPR006015 Universal stress protein A trd_1976 c4cd50e209c7f30e430c6bb1971e2570 141 Gene3D G3DSA:3.40.50.620 1 140 4.7E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1976 c4cd50e209c7f30e430c6bb1971e2570 141 SUPERFAMILY SSF52402 2 140 1.67E-38 T 13-10-2018 trd_1976 c4cd50e209c7f30e430c6bb1971e2570 141 Pfam PF00582 Universal stress protein family 1 140 2.6E-35 T 13-10-2018 IPR006016 UspA trd_0042 69f244722d56c1fd0c357afb1d6c4899 254 PIRSF PIRSF000090 1 253 1.5E-58 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 trd_0042 69f244722d56c1fd0c357afb1d6c4899 254 SMART SM00893 24 207 1.9E-41 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0042 69f244722d56c1fd0c357afb1d6c4899 254 Pfam PF01012 Electron transfer flavoprotein domain 31 202 6.5E-38 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0042 69f244722d56c1fd0c357afb1d6c4899 254 Gene3D G3DSA:3.40.50.620 1 253 3.0E-70 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0042 69f244722d56c1fd0c357afb1d6c4899 254 SUPERFAMILY SSF52402 2 244 6.84E-57 T 13-10-2018 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Gene3D G3DSA:3.30.365.10 424 791 6.8E-142 T 13-10-2018 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Gene3D G3DSA:3.30.365.10 203 415 1.0E-79 T 13-10-2018 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Gene3D G3DSA:3.30.365.10 511 666 6.8E-142 T 13-10-2018 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Gene3D G3DSA:3.90.1170.50 36 189 1.1E-45 T 13-10-2018 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 SUPERFAMILY SSF56003 181 815 8.11E-207 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 64 189 3.0E-27 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Gene3D G3DSA:3.30.365.10 245 341 1.0E-79 T 13-10-2018 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 SMART SM01008 64 189 7.1E-47 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 206 751 9.0E-184 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_1848 1c73cdd09d2c8f9ca44a7f7541dc3f48 819 SUPERFAMILY SSF54665 48 211 2.09E-44 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 SUPERFAMILY SSF50346 111 179 2.94E-19 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 Pfam PF01782 RimM N-terminal domain 23 102 3.3E-20 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 Pfam PF05239 PRC-barrel domain 108 178 8.7E-9 T 13-10-2018 IPR027275 PRC-barrel domain trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 21 179 1.2E-43 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 SUPERFAMILY SSF50447 20 102 2.24E-18 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 Gene3D G3DSA:2.30.30.240 106 184 7.7E-20 T 13-10-2018 trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 Gene3D G3DSA:2.40.30.60 20 103 3.1E-19 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 trd_0111 03b1abf5b8acc712f6bf9f41df987a4f 184 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 20 181 25.004 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 9 324 7.2E-153 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PIRSF PIRSF001415 2 328 1.3E-153 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 SMART SM01004 8 325 1.1E-239 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 244 256 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 Gene3D G3DSA:3.20.20.70 4 326 2.5E-151 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 SUPERFAMILY SSF51569 7 326 2.2E-144 T 13-10-2018 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 299 318 1.4E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 154 173 1.4E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 124 138 1.4E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 192 211 1.4E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 244 260 1.4E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1124 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 269 284 1.4E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 Pfam PF00563 EAL domain 771 998 7.9E-23 T 13-10-2018 IPR001633 EAL domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 SUPERFAMILY SSF55073 604 757 2.28E-47 T 13-10-2018 IPR029787 Nucleotide cyclase trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 SUPERFAMILY SSF55785 464 584 1.62E-17 T 13-10-2018 IPR035965 PAS domain superfamily trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 SMART SM00052 765 1011 1.9E-6 T 13-10-2018 IPR001633 EAL domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 SUPERFAMILY SSF141868 771 999 2.48E-24 T 13-10-2018 IPR035919 EAL domain superfamily trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 Pfam PF08448 PAS fold 485 590 5.9E-10 T 13-10-2018 IPR013656 PAS fold-4 trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 Gene3D G3DSA:3.30.450.20 466 596 2.8E-20 T 13-10-2018 trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 SMART SM00091 479 546 8.7E-6 T 13-10-2018 IPR000014 PAS domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 Pfam PF00990 Diguanylate cyclase, GGDEF domain 599 750 4.2E-40 T 13-10-2018 IPR000160 GGDEF domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 Gene3D G3DSA:3.20.20.450 767 1011 3.3E-25 T 13-10-2018 IPR035919 EAL domain superfamily trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 SMART SM00267 588 755 2.6E-58 T 13-10-2018 IPR000160 GGDEF domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 595 754 2.8E-40 T 13-10-2018 IPR000160 GGDEF domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 475 595 2.8E-7 T 13-10-2018 IPR000014 PAS domain trd_1813 37c1fa895331cee8e845db7f3f6fc8a4 1056 Gene3D G3DSA:3.30.70.270 597 758 1.7E-55 T 13-10-2018 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 SMART SM00845 330 478 7.4E-59 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 Pfam PF02934 GatB/GatE catalytic domain 5 288 1.5E-109 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 SUPERFAMILY SSF89095 299 406 1.11E-24 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 SUPERFAMILY SSF55931 4 298 6.54E-114 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 2 478 4.3E-172 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 479 37.516 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 Gene3D G3DSA:1.10.10.410 418 481 8.4E-24 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 Gene3D G3DSA:1.10.150.380 303 416 6.8E-30 T 13-10-2018 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 Pfam PF02637 GatB domain 330 478 3.6E-42 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 trd_1474 c0023bf179b87e96eb659487ec1b2e91 483 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 146 160 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 trd_0818 1195199c0ee21b3fcf4e8209f0e81dd3 265 SMART SM00849 11 210 3.6E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0818 1195199c0ee21b3fcf4e8209f0e81dd3 265 Gene3D G3DSA:3.60.15.10 7 228 5.0E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0818 1195199c0ee21b3fcf4e8209f0e81dd3 265 SUPERFAMILY SSF56281 2 224 4.32E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0818 1195199c0ee21b3fcf4e8209f0e81dd3 265 Pfam PF00753 Metallo-beta-lactamase superfamily 11 118 3.3E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1849 07ac607acfbe9796bf09385bed8931c7 266 SUPERFAMILY SSF53335 28 184 1.52E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1849 07ac607acfbe9796bf09385bed8931c7 266 Pfam PF08241 Methyltransferase domain 41 134 8.0E-25 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 trd_1849 07ac607acfbe9796bf09385bed8931c7 266 Gene3D G3DSA:3.40.50.150 18 171 7.8E-40 T 13-10-2018 trd_1521 aa41f433891272b14b707c7c3c47c14d 277 Gene3D G3DSA:3.30.1490.20 104 170 2.3E-21 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_1521 aa41f433891272b14b707c7c3c47c14d 277 SUPERFAMILY SSF52440 4 84 2.36E-8 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_1521 aa41f433891272b14b707c7c3c47c14d 277 Gene3D G3DSA:3.30.470.80 171 264 1.6E-9 T 13-10-2018 trd_1521 aa41f433891272b14b707c7c3c47c14d 277 SUPERFAMILY SSF56059 78 263 1.06E-14 T 13-10-2018 trd_1521 aa41f433891272b14b707c7c3c47c14d 277 Gene3D G3DSA:3.40.50.20 1 103 4.5E-17 T 13-10-2018 trd_1870 61ff6c7e2afd7a371196a2cda0fa945d 240 SUPERFAMILY SSF52540 4 218 3.11E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1870 61ff6c7e2afd7a371196a2cda0fa945d 240 Gene3D G3DSA:3.40.50.300 14 222 2.1E-60 T 13-10-2018 trd_1870 61ff6c7e2afd7a371196a2cda0fa945d 240 PIRSF PIRSF005624 2 228 1.9E-84 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 trd_1870 61ff6c7e2afd7a371196a2cda0fa945d 240 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 34 195 4.3E-27 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain trd_1870 61ff6c7e2afd7a371196a2cda0fa945d 240 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 7 217 3.2E-76 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 trd_A0700 36501e33f6361119386071ac708083cf 314 SUPERFAMILY SSF161098 89 298 8.18E-20 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0700 36501e33f6361119386071ac708083cf 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 313 9.1E-45 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0700 36501e33f6361119386071ac708083cf 314 Gene3D G3DSA:1.10.3720.10 84 308 1.6E-23 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 Gene3D G3DSA:3.90.180.10 17 338 1.1E-109 T 13-10-2018 trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 SUPERFAMILY SSF50129 13 181 1.11E-47 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 Pfam PF00107 Zinc-binding dehydrogenase 186 311 4.8E-26 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 SUPERFAMILY SSF51735 147 317 1.4E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 143 4.3E-30 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 SMART SM00829 12 345 3.9E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 70 84 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_A0539 8375c54f69afc0436f2e8a4346ca450d 347 Gene3D G3DSA:3.40.50.720 158 296 1.1E-109 T 13-10-2018 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 PIRSF PIRSF000171 1 569 2.6E-53 T 13-10-2018 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 SUPERFAMILY SSF56425 233 350 3.44E-42 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 Gene3D G3DSA:4.10.80.40 539 572 3.9E-7 T 13-10-2018 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 SUPERFAMILY SSF46977 442 576 1.44E-54 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 40 49 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 Pfam PF00890 FAD binding domain 7 397 4.3E-118 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 Gene3D G3DSA:3.90.700.10 243 345 3.3E-166 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 SUPERFAMILY SSF51905 3 432 6.66E-79 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 Gene3D G3DSA:1.20.58.100 426 538 1.2E-37 T 13-10-2018 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 576 8.5E-247 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 4 576 2.1E-266 T 13-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 Gene3D G3DSA:3.50.50.60 7 408 3.3E-166 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0331 5f9612cd3fcd1f207ea64f1d2be724ec 576 Pfam PF02910 Fumarate reductase flavoprotein C-term 451 576 4.0E-43 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0493 529be52f60c6055f965df55d317563db 114 Gene3D G3DSA:2.40.50.140 1 114 5.8E-30 T 13-10-2018 trd_0493 529be52f60c6055f965df55d317563db 114 Pfam PF01588 Putative tRNA binding domain 17 111 4.4E-15 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 trd_0493 529be52f60c6055f965df55d317563db 114 SUPERFAMILY SSF50249 7 113 1.49E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0493 529be52f60c6055f965df55d317563db 114 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 10 113 1.1E-42 T 13-10-2018 IPR008231 Probable chaperone CsaA trd_0602 6ea618ac0fd1bcf19e539cdf3e4b63f0 129 Pfam PF06525 Sulfocyanin (SoxE) domain 34 126 6.1E-5 T 13-10-2018 IPR010532 Sulfocyanin GO:0005507|GO:0055114 trd_0602 6ea618ac0fd1bcf19e539cdf3e4b63f0 129 SUPERFAMILY SSF49503 14 124 7.24E-13 T 13-10-2018 IPR008972 Cupredoxin trd_0602 6ea618ac0fd1bcf19e539cdf3e4b63f0 129 Gene3D G3DSA:2.60.40.420 5 127 4.7E-17 T 13-10-2018 IPR008972 Cupredoxin trd_0642 72e6c260d652e98902c02afe8760e37f 433 SMART SM01192 140 427 3.5E-198 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 Gene3D G3DSA:3.30.390.10 3 127 2.7E-54 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_0642 72e6c260d652e98902c02afe8760e37f 433 SUPERFAMILY SSF51604 139 425 1.44E-116 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_0642 72e6c260d652e98902c02afe8760e37f 433 SUPERFAMILY SSF54826 5 141 1.85E-54 T 13-10-2018 trd_0642 72e6c260d652e98902c02afe8760e37f 433 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 6 425 1.6E-192 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 39 53 1.2E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 163 176 1.2E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 108 124 1.2E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 365 382 1.2E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 336 350 1.2E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 313 324 1.2E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 Hamap MF_00318 Enolase [eno]. 4 413 44.405 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 Gene3D G3DSA:3.20.20.120 129 428 4.2E-124 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_0642 72e6c260d652e98902c02afe8760e37f 433 PIRSF PIRSF001400 2 426 7.8E-180 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 SMART SM01193 6 135 3.0E-92 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 422 3.2E-113 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 Pfam PF03952 Enolase, N-terminal domain 6 135 3.8E-59 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 trd_0642 72e6c260d652e98902c02afe8760e37f 433 ProSitePatterns PS00164 Enolase signature. 336 349 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0702 d1daf01d6616f96368310e7a363b9bd3 418 Pfam PF01882 Protein of unknown function DUF58 186 285 2.1E-22 T 13-10-2018 IPR002881 Domain of unknown function DUF58 trd_1925 40570d8bb2cbda61690e61fa99ba94b9 274 PIRSF PIRSF003092 1 270 2.3E-88 T 13-10-2018 IPR025501 ATP binding protein MinD trd_1925 40570d8bb2cbda61690e61fa99ba94b9 274 Gene3D G3DSA:3.40.50.300 9 255 7.1E-73 T 13-10-2018 trd_1925 40570d8bb2cbda61690e61fa99ba94b9 274 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 10 264 1.6E-121 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 trd_1925 40570d8bb2cbda61690e61fa99ba94b9 274 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 12 225 5.8E-25 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain trd_1925 40570d8bb2cbda61690e61fa99ba94b9 274 SUPERFAMILY SSF52540 9 255 1.54E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0074 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:3.10.310.70 79 200 4.0E-148 T 13-10-2018 trd_0074 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:2.30.40.10 8 505 4.0E-148 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0074 d4506478ec5fd0603a187402cbe0f809 531 SUPERFAMILY SSF51338 4 530 3.24E-14 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_0074 d4506478ec5fd0603a187402cbe0f809 531 SUPERFAMILY SSF51556 60 488 1.27E-40 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0074 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:3.20.20.140 61 488 4.0E-148 T 13-10-2018 trd_0074 d4506478ec5fd0603a187402cbe0f809 531 Pfam PF07969 Amidohydrolase family 52 529 1.1E-111 T 13-10-2018 IPR013108 Amidohydrolase 3 trd_0163 26398a8af2fa41b3b58b970eea1356a6 140 SUPERFAMILY SSF47240 1 137 1.96E-34 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_0163 26398a8af2fa41b3b58b970eea1356a6 140 Pfam PF00210 Ferritin-like domain 7 137 2.8E-29 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 trd_0163 26398a8af2fa41b3b58b970eea1356a6 140 Gene3D G3DSA:1.20.1260.10 1 140 5.6E-42 T 13-10-2018 IPR012347 Ferritin-like trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF47323 583 842 2.24E-64 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 51 62 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 TIGRFAM TIGR00422 valS: valine--tRNA ligase 12 874 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:1.10.730.10 12 754 0.0 T 13-10-2018 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Pfam PF08264 Anticodon-binding domain of tRNA 621 762 5.4E-44 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF52374 12 581 2.03E-140 T 13-10-2018 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 23 571 3.4E-200 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:3.40.50.620 30 532 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 827 891 2.9E-18 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF46589 827 891 1.73E-13 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF50677 198 348 1.44E-57 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Hamap MF_02004 Valine--tRNA ligase [valS]. 10 892 15.668 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:3.90.740.10 183 350 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 238 255 4.0E-39 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 452 473 4.0E-39 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 483 501 4.0E-39 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 353 366 4.0E-39 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 44 55 4.0E-39 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 trd_1512 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:1.10.287.380 820 892 8.4E-19 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 trd_1939 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 184 230 8.4E-6 T 13-10-2018 IPR036779 LysM domain superfamily trd_1939 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 233 289 4.2E-6 T 13-10-2018 IPR036779 LysM domain superfamily trd_1939 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 339 395 1.8E-7 T 13-10-2018 IPR036779 LysM domain superfamily trd_1939 82b507502267aa75cf020f461214cf0c 542 SUPERFAMILY SSF51261 412 541 2.3E-44 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_1939 82b507502267aa75cf020f461214cf0c 542 SUPERFAMILY SSF54106 293 337 8.5E-12 T 13-10-2018 trd_1939 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 294 337 2.1E-18 T 13-10-2018 IPR036779 LysM domain superfamily trd_1939 82b507502267aa75cf020f461214cf0c 542 Pfam PF01551 Peptidase family M23 441 537 1.8E-28 T 13-10-2018 IPR016047 Peptidase M23 trd_1939 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 187 230 0.019 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 295 337 1.2E-14 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 346 390 3.4E-4 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 237 260 2.3E-4 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 294 338 1.2E-12 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 236 282 0.64 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 344 390 1.2 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 185 230 0.87 T 13-10-2018 IPR018392 LysM domain trd_1939 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:2.70.70.10 408 542 1.4E-39 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_0842 12c7272bc487aba51422d6485b03a51e 333 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 27 317 2.4E-46 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0842 12c7272bc487aba51422d6485b03a51e 333 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 227 319 1.4E-15 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0842 12c7272bc487aba51422d6485b03a51e 333 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 49 206 1.1E-14 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_A0712 4c65b7a77a929c3b0e9dc64040ac4f67 308 SUPERFAMILY SSF53067 5 114 3.97E-18 T 13-10-2018 trd_A0712 4c65b7a77a929c3b0e9dc64040ac4f67 308 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 7 273 1.0E-32 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 trd_A0712 4c65b7a77a929c3b0e9dc64040ac4f67 308 SUPERFAMILY SSF53067 120 304 6.4E-44 T 13-10-2018 trd_A0712 4c65b7a77a929c3b0e9dc64040ac4f67 308 Gene3D G3DSA:3.30.420.40 7 116 1.7E-72 T 13-10-2018 trd_A0712 4c65b7a77a929c3b0e9dc64040ac4f67 308 Gene3D G3DSA:3.30.420.40 117 281 1.7E-72 T 13-10-2018 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 SMART SM00829 10 369 3.0E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 SUPERFAMILY SSF50129 1 192 1.98E-61 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 Gene3D G3DSA:3.40.50.720 173 313 2.2E-128 T 13-10-2018 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 Gene3D G3DSA:3.90.180.10 7 365 2.2E-128 T 13-10-2018 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 SUPERFAMILY SSF50129 322 370 2.4E-9 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 TIGRFAM TIGR03989 Rxyl_3153: NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family 2 370 6.6E-174 T 13-10-2018 IPR023921 Alcohol dehydrogenase, zinc-type, actinomycetes KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 Pfam PF00107 Zinc-binding dehydrogenase 196 330 3.5E-26 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 SUPERFAMILY SSF51735 157 337 3.65E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_A0843 be732c40b5cdb630927aedfad72ac1f4 371 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 153 1.9E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 Gene3D G3DSA:3.40.50.720 173 313 3.5E-122 T 13-10-2018 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 TIGRFAM TIGR03989 Rxyl_3153: NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family 2 370 3.1E-162 T 13-10-2018 IPR023921 Alcohol dehydrogenase, zinc-type, actinomycetes KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 SUPERFAMILY SSF50129 323 370 1.74E-8 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 SUPERFAMILY SSF50129 1 191 1.17E-60 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 SMART SM00829 10 368 4.8E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 SUPERFAMILY SSF51735 158 335 6.57E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 Gene3D G3DSA:3.90.180.10 7 365 3.5E-122 T 13-10-2018 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 Pfam PF00107 Zinc-binding dehydrogenase 196 321 8.3E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_A0847 4dc178567ab670e59adce4b26c13ad16 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 153 1.3E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_0745 51d56244686dc61ec36269e148494b9a 441 Gene3D G3DSA:1.10.275.10 1 92 1.4E-31 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal trd_0745 51d56244686dc61ec36269e148494b9a 441 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 428 5.4E-23 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 2.5E-9 T 13-10-2018 trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 2.5E-9 T 13-10-2018 trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 2.5E-9 T 13-10-2018 trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 2.5E-9 T 13-10-2018 trd_0745 51d56244686dc61ec36269e148494b9a 441 Gene3D G3DSA:1.20.200.10 93 348 4.5E-97 T 13-10-2018 trd_0745 51d56244686dc61ec36269e148494b9a 441 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 trd_0745 51d56244686dc61ec36269e148494b9a 441 SUPERFAMILY SSF48557 3 427 3.61E-128 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 trd_0745 51d56244686dc61ec36269e148494b9a 441 SMART SM00998 349 429 5.6E-34 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0745 51d56244686dc61ec36269e148494b9a 441 Pfam PF00206 Lyase 7 281 1.5E-53 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal trd_0745 51d56244686dc61ec36269e148494b9a 441 Gene3D G3DSA:1.10.40.30 349 431 4.1E-28 T 13-10-2018 trd_0745 51d56244686dc61ec36269e148494b9a 441 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 428 4.5E-159 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.1E-24 T 13-10-2018 IPR000362 Fumarate lyase family trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 1.1E-24 T 13-10-2018 IPR000362 Fumarate lyase family trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 1.1E-24 T 13-10-2018 IPR000362 Fumarate lyase family trd_0745 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 1.1E-24 T 13-10-2018 IPR000362 Fumarate lyase family trd_1830 ee5c08d4193b0f27adda213d5745b916 298 SUPERFAMILY SSF161098 39 282 9.81E-39 T 13-10-2018 IPR035906 MetI-like superfamily trd_1830 ee5c08d4193b0f27adda213d5745b916 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 297 1.2E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1830 ee5c08d4193b0f27adda213d5745b916 298 Gene3D G3DSA:1.10.3720.10 72 297 1.2E-32 T 13-10-2018 IPR035906 MetI-like superfamily trd_1830 ee5c08d4193b0f27adda213d5745b916 298 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 27 293 6.9E-83 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 trd_0974 0871690daa26d9a819a7670aac58fd55 122 Gene3D G3DSA:2.40.150.20 1 122 6.1E-54 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0974 0871690daa26d9a819a7670aac58fd55 122 SUPERFAMILY SSF50193 1 121 4.71E-52 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0974 0871690daa26d9a819a7670aac58fd55 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 121 1.3E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 trd_0974 0871690daa26d9a819a7670aac58fd55 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 121 3.7E-56 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 trd_0974 0871690daa26d9a819a7670aac58fd55 122 SMART SM01374 1 122 4.6E-88 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 trd_0974 0871690daa26d9a819a7670aac58fd55 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0974 0871690daa26d9a819a7670aac58fd55 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.26 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 trd_0497 541621bebde4e76e321794e625ff620a 299 SUPERFAMILY SSF53850 92 294 2.67E-49 T 13-10-2018 trd_0497 541621bebde4e76e321794e625ff620a 299 SUPERFAMILY SSF46785 3 112 4.26E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0497 541621bebde4e76e321794e625ff620a 299 Pfam PF03466 LysR substrate binding domain 91 293 2.4E-55 T 13-10-2018 IPR005119 LysR, substrate-binding trd_0497 541621bebde4e76e321794e625ff620a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.6E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 trd_0497 541621bebde4e76e321794e625ff620a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.6E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 trd_0497 541621bebde4e76e321794e625ff620a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.6E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 trd_0497 541621bebde4e76e321794e625ff620a 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 7.2E-26 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 trd_0497 541621bebde4e76e321794e625ff620a 299 Gene3D G3DSA:3.40.190.290 95 297 1.2E-49 T 13-10-2018 trd_0497 541621bebde4e76e321794e625ff620a 299 Gene3D G3DSA:1.10.10.10 3 94 5.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0008 efe437e6d038a1c360ae2c7caef700eb 139 PRINTS PR00332 Histidine triad family signature 5 21 4.2E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_A0008 efe437e6d038a1c360ae2c7caef700eb 139 PRINTS PR00332 Histidine triad family signature 26 44 4.2E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_A0008 efe437e6d038a1c360ae2c7caef700eb 139 PRINTS PR00332 Histidine triad family signature 91 101 4.2E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_A0008 efe437e6d038a1c360ae2c7caef700eb 139 Pfam PF01230 HIT domain 12 105 1.3E-20 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_A0008 efe437e6d038a1c360ae2c7caef700eb 139 Gene3D G3DSA:3.30.428.10 1 137 1.7E-38 T 13-10-2018 IPR036265 HIT-like superfamily trd_A0008 efe437e6d038a1c360ae2c7caef700eb 139 SUPERFAMILY SSF54197 1 136 6.24E-39 T 13-10-2018 IPR036265 HIT-like superfamily trd_0181 f2290b786475113035f21a3a8f35988a 244 Pfam PF00977 Histidine biosynthesis protein 3 229 7.1E-72 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 trd_0181 f2290b786475113035f21a3a8f35988a 244 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 34.19 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 trd_0181 f2290b786475113035f21a3a8f35988a 244 SUPERFAMILY SSF51366 2 233 2.02E-64 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0181 f2290b786475113035f21a3a8f35988a 244 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 232 6.1E-75 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 trd_0181 f2290b786475113035f21a3a8f35988a 244 Gene3D G3DSA:3.20.20.70 2 237 6.9E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 198 216 6.0E-11 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.0E-11 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 312 6.0E-11 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 6.0E-11 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.8E-7 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 151 160 2.8E-7 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 311 2.8E-7 T 13-10-2018 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 Pfam PF01266 FAD dependent oxidoreductase 9 315 1.7E-8 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 Gene3D G3DSA:3.50.50.60 2 390 1.3E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0077 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 SUPERFAMILY SSF51905 8 391 2.41E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0070 fcd3102be8021a18969c541555d66e58 564 Gene3D G3DSA:3.50.30.10 459 563 1.6E-32 T 13-10-2018 trd_A0070 fcd3102be8021a18969c541555d66e58 564 SUPERFAMILY SSF52009 460 561 2.88E-27 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 trd_A0070 fcd3102be8021a18969c541555d66e58 564 Pfam PF00391 PEP-utilising enzyme, mobile domain 488 558 6.5E-22 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 trd_0211 55262fea52e239b02889a3879ea28e4a 442 Gene3D G3DSA:1.20.1420.30 53 306 4.5E-9 T 13-10-2018 trd_0211 55262fea52e239b02889a3879ea28e4a 442 Pfam PF01699 Sodium/calcium exchanger protein 193 313 6.1E-6 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 trd_0211 55262fea52e239b02889a3879ea28e4a 442 Pfam PF01699 Sodium/calcium exchanger protein 26 171 8.9E-9 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 trd_0211 55262fea52e239b02889a3879ea28e4a 442 Gene3D G3DSA:1.20.58.1130 27 224 4.5E-9 T 13-10-2018 trd_1884 6ae81ec086e30f071a0fdb185ca2bed0 345 Gene3D G3DSA:3.90.1150.10 248 342 6.2E-32 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1884 6ae81ec086e30f071a0fdb185ca2bed0 345 SUPERFAMILY SSF53383 1 340 1.08E-115 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1884 6ae81ec086e30f071a0fdb185ca2bed0 345 Gene3D G3DSA:3.40.640.10 1 247 2.0E-82 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1884 6ae81ec086e30f071a0fdb185ca2bed0 345 PIRSF PIRSF017617 1 345 8.5E-133 T 13-10-2018 IPR023603 Threonine aldolase trd_1884 6ae81ec086e30f071a0fdb185ca2bed0 345 Pfam PF01212 Beta-eliminating lyase 3 287 6.4E-87 T 13-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 trd_0563 f836ef4416d35c2f6a3f930d891c8744 418 Gene3D G3DSA:3.50.50.60 5 403 3.7E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0563 f836ef4416d35c2f6a3f930d891c8744 418 SUPERFAMILY SSF51905 8 370 2.77E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0563 f836ef4416d35c2f6a3f930d891c8744 418 Pfam PF01494 FAD binding domain 9 173 1.8E-8 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 trd_0563 f836ef4416d35c2f6a3f930d891c8744 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 4.7E-6 T 13-10-2018 trd_0563 f836ef4416d35c2f6a3f930d891c8744 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 4.7E-6 T 13-10-2018 trd_0563 f836ef4416d35c2f6a3f930d891c8744 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 4.7E-6 T 13-10-2018 trd_1860 fbc08672221beceed91f23d138b772a2 297 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 72 1.8E-6 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain trd_1860 fbc08672221beceed91f23d138b772a2 297 SUPERFAMILY SSF161098 91 281 2.88E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_1860 fbc08672221beceed91f23d138b772a2 297 Gene3D G3DSA:1.10.3720.10 87 291 2.3E-19 T 13-10-2018 IPR035906 MetI-like superfamily trd_1860 fbc08672221beceed91f23d138b772a2 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 5.4E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0410 ce499d25ab28df7e003757f907e2aeb3 215 Gene3D G3DSA:3.40.30.10 37 190 8.9E-13 T 13-10-2018 trd_0410 ce499d25ab28df7e003757f907e2aeb3 215 SUPERFAMILY SSF52833 43 191 9.34E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0519 f4c91b4ecda40a42ddc4a4359008a403 205 TIGRFAM TIGR00277 HDIG: HDIG domain 22 97 2.7E-12 T 13-10-2018 IPR006675 HDIG domain trd_0519 f4c91b4ecda40a42ddc4a4359008a403 205 SUPERFAMILY SSF109604 9 119 3.07E-18 T 13-10-2018 trd_0519 f4c91b4ecda40a42ddc4a4359008a403 205 Gene3D G3DSA:1.10.3210.10 7 158 2.4E-10 T 13-10-2018 trd_0519 f4c91b4ecda40a42ddc4a4359008a403 205 Pfam PF01966 HD domain 25 118 5.7E-10 T 13-10-2018 IPR006674 HD domain trd_A0061 d36174ab0a891290036d2666ccd8a50b 290 SUPERFAMILY SSF144020 36 272 2.22E-38 T 13-10-2018 IPR024064 FdhE-like superfamily trd_A0061 d36174ab0a891290036d2666ccd8a50b 290 Gene3D G3DSA:3.90.1670.10 5 279 6.7E-39 T 13-10-2018 IPR024064 FdhE-like superfamily trd_A0061 d36174ab0a891290036d2666ccd8a50b 290 Pfam PF04216 Protein involved in formate dehydrogenase formation 119 271 8.8E-23 T 13-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 SUPERFAMILY SSF52922 203 339 1.7E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 Gene3D G3DSA:3.40.50.920 208 339 8.4E-49 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 SMART SM00861 8 195 1.0E-63 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 Pfam PF02780 Transketolase, C-terminal domain 209 331 8.7E-43 T 13-10-2018 IPR033248 Transketolase, C-terminal domain trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 Gene3D G3DSA:3.40.50.970 6 207 1.6E-84 T 13-10-2018 trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 SUPERFAMILY SSF52518 6 219 6.96E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1494 bdc97219d2da5f160c4f95f21fb24925 339 Pfam PF02779 Transketolase, pyrimidine binding domain 8 195 1.3E-53 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1912 abb7a25428b405e7407764356adb90ba 105 Gene3D G3DSA:3.40.30.10 1 101 2.5E-21 T 13-10-2018 trd_1912 abb7a25428b405e7407764356adb90ba 105 SUPERFAMILY SSF52833 2 101 1.07E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1912 abb7a25428b405e7407764356adb90ba 105 Pfam PF00578 AhpC/TSA family 3 80 3.6E-16 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 trd_0269 f7a7f5301debce525d6d9fb5297d9afd 349 Pfam PF05343 M42 glutamyl aminopeptidase 46 337 1.7E-65 T 13-10-2018 IPR008007 Peptidase M42 trd_0269 f7a7f5301debce525d6d9fb5297d9afd 349 SUPERFAMILY SSF101821 70 179 9.77E-15 T 13-10-2018 trd_0269 f7a7f5301debce525d6d9fb5297d9afd 349 SUPERFAMILY SSF53187 6 344 2.22E-51 T 13-10-2018 trd_0269 f7a7f5301debce525d6d9fb5297d9afd 349 Gene3D G3DSA:3.40.630.10 11 340 1.6E-83 T 13-10-2018 trd_0269 f7a7f5301debce525d6d9fb5297d9afd 349 PIRSF PIRSF001123 2 349 2.1E-69 T 13-10-2018 IPR008007 Peptidase M42 trd_0269 f7a7f5301debce525d6d9fb5297d9afd 349 Gene3D G3DSA:2.40.30.40 73 162 1.6E-83 T 13-10-2018 IPR023367 Peptidase M42, domain 2 trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 Pfam PF01799 [2Fe-2S] binding domain 75 148 3.3E-28 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 Gene3D G3DSA:1.10.150.120 78 161 1.2E-29 T 13-10-2018 trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 57 1.3E-5 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 Gene3D G3DSA:3.10.20.30 1 77 3.0E-24 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 SUPERFAMILY SSF54292 4 80 7.73E-21 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_A0068 5586f5adfeae9b4760f06284438abc3e 161 SUPERFAMILY SSF47741 87 156 8.11E-30 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily trd_A0211 cb4f17c6bb5f9625b4754e2035c6e5ef 126 SMART SM00448 2 119 1.6E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0211 cb4f17c6bb5f9625b4754e2035c6e5ef 126 Pfam PF00072 Response regulator receiver domain 4 119 1.3E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0211 cb4f17c6bb5f9625b4754e2035c6e5ef 126 SUPERFAMILY SSF52172 1 124 1.15E-36 T 13-10-2018 IPR011006 CheY-like superfamily trd_A0211 cb4f17c6bb5f9625b4754e2035c6e5ef 126 Gene3D G3DSA:3.40.50.2300 1 126 9.8E-37 T 13-10-2018 trd_A0176 122d83ec0f7fb4aab9e1339e9fd323c7 481 SUPERFAMILY SSF103378 13 478 3.53E-140 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 trd_A0176 122d83ec0f7fb4aab9e1339e9fd323c7 481 Gene3D G3DSA:1.10.4100.10 22 454 6.1E-177 T 13-10-2018 trd_A0176 122d83ec0f7fb4aab9e1339e9fd323c7 481 Pfam PF03972 MmgE/PrpD family 18 456 8.7E-137 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 trd_A0176 122d83ec0f7fb4aab9e1339e9fd323c7 481 Gene3D G3DSA:3.30.1330.120 285 423 6.1E-177 T 13-10-2018 trd_A0176 122d83ec0f7fb4aab9e1339e9fd323c7 481 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 13 477 5.9E-210 T 13-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 trd_A0222 255589918bb3f881381bd249e4041fa9 121 Pfam PF05400 Flagellar protein FliT 21 104 1.2E-13 T 13-10-2018 IPR008622 Flagellar protein FliT trd_A0222 255589918bb3f881381bd249e4041fa9 121 SUPERFAMILY SSF140566 7 103 4.58E-6 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 trd_A0222 255589918bb3f881381bd249e4041fa9 121 Gene3D G3DSA:1.20.58.380 4 90 2.5E-6 T 13-10-2018 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 SUPERFAMILY SSF51230 2 90 7.33E-28 T 13-10-2018 IPR011053 Single hybrid motif trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 Pfam PF00364 Biotin-requiring enzyme 5 76 1.1E-21 T 13-10-2018 IPR000089 Biotin/lipoyl attachment trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 SUPERFAMILY SSF47005 122 165 1.44E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 211 440 5.5E-79 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 Gene3D G3DSA:2.40.50.100 2 99 1.6E-31 T 13-10-2018 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 Gene3D G3DSA:3.30.559.10 195 438 1.7E-84 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 Gene3D G3DSA:4.10.320.10 117 167 9.2E-20 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 SUPERFAMILY SSF52777 210 441 1.69E-76 T 13-10-2018 trd_1735 99fd3b509eb34cf818c5f70026b1a9ca 442 Pfam PF02817 e3 binding domain 127 162 4.7E-18 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 trd_A0728 123eb8a0beb2dc96eb54e5d1abe99288 347 Pfam PF01551 Peptidase family M23 173 266 2.5E-18 T 13-10-2018 IPR016047 Peptidase M23 trd_A0728 123eb8a0beb2dc96eb54e5d1abe99288 347 SUPERFAMILY SSF51261 171 265 2.46E-22 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_A0728 123eb8a0beb2dc96eb54e5d1abe99288 347 Gene3D G3DSA:2.70.70.10 124 287 2.7E-26 T 13-10-2018 IPR011055 Duplicated hybrid motif trd_1323 787b3aee7db4c5771779f940b1aae615 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 217 2.1E-33 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 trd_1323 787b3aee7db4c5771779f940b1aae615 494 PIRSF PIRSF000538 5 493 1.0E-75 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 trd_1323 787b3aee7db4c5771779f940b1aae615 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 437 4.4E-18 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 trd_1323 787b3aee7db4c5771779f940b1aae615 494 Gene3D G3DSA:3.30.420.40 244 492 8.9E-46 T 13-10-2018 trd_1323 787b3aee7db4c5771779f940b1aae615 494 SUPERFAMILY SSF53067 249 484 1.42E-35 T 13-10-2018 trd_1323 787b3aee7db4c5771779f940b1aae615 494 SUPERFAMILY SSF53067 7 250 2.41E-46 T 13-10-2018 trd_1323 787b3aee7db4c5771779f940b1aae615 494 Gene3D G3DSA:3.30.420.40 4 243 1.1E-52 T 13-10-2018 trd_1045 5233d2db2f62730fdf9e90d8665ca853 407 Pfam PF01546 Peptidase family M20/M25/M40 83 397 2.1E-25 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_1045 5233d2db2f62730fdf9e90d8665ca853 407 Gene3D G3DSA:3.40.630.10 28 389 1.4E-72 T 13-10-2018 trd_1045 5233d2db2f62730fdf9e90d8665ca853 407 Pfam PF07687 Peptidase dimerisation domain 185 285 8.5E-18 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_1045 5233d2db2f62730fdf9e90d8665ca853 407 Gene3D G3DSA:3.30.70.360 188 314 1.4E-72 T 13-10-2018 trd_1045 5233d2db2f62730fdf9e90d8665ca853 407 SUPERFAMILY SSF55031 187 297 3.79E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_1045 5233d2db2f62730fdf9e90d8665ca853 407 SUPERFAMILY SSF53187 12 400 7.65E-53 T 13-10-2018 trd_0996 05a731e8b81fb8b59687f3c1379c8801 149 Pfam PF04519 Polymer-forming cytoskeletal 17 113 4.7E-25 T 13-10-2018 IPR007607 Bactofilin A/B trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Gene3D G3DSA:3.40.50.1220 193 374 6.9E-46 T 13-10-2018 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 SUPERFAMILY SSF52518 13 180 1.28E-37 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 569 36.529 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Gene3D G3DSA:3.40.50.970 1 174 7.9E-65 T 13-10-2018 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Pfam PF16582 Middle domain of thiamine pyrophosphate 213 397 1.3E-8 T 13-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 11 444 4.0E-137 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 SUPERFAMILY SSF52518 382 569 2.06E-31 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 PIRSF PIRSF004983 1 576 3.5E-170 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 435 550 8.1E-9 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 SUPERFAMILY SSF52467 167 367 6.91E-11 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Gene3D G3DSA:3.40.50.970 377 579 1.7E-68 T 13-10-2018 trd_A0261 ce9eba634fb6c2b5d712aa6a5c21d609 583 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 179 5.1E-37 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_1978 4390632f269a603033cee8c3fbf92ff5 131 Pfam PF05168 HEPN domain 7 126 4.9E-34 T 13-10-2018 IPR007842 HEPN domain trd_1978 4390632f269a603033cee8c3fbf92ff5 131 SMART SM00748 9 120 6.2E-33 T 13-10-2018 IPR007842 HEPN domain trd_1978 4390632f269a603033cee8c3fbf92ff5 131 Gene3D G3DSA:1.20.120.330 3 128 5.1E-38 T 13-10-2018 trd_1978 4390632f269a603033cee8c3fbf92ff5 131 SUPERFAMILY SSF81593 3 126 4.71E-40 T 13-10-2018 trd_0512 1b0fdfe6c151a4c9e2b30000bcbbd6f0 209 Pfam PF07920 Protein of unknown function (DUF1684) 49 185 1.3E-44 T 13-10-2018 IPR012467 Protein of unknown function DUF1684 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 17 928 16.938 T 13-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 SUPERFAMILY SSF51621 25 928 3.45E-262 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 620 649 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 578 598 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 413 433 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 757 783 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 154 167 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 207 223 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 269 284 1.8E-54 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 580 592 - T 13-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 Gene3D G3DSA:1.20.1440.90 299 416 1.3E-8 T 13-10-2018 trd_1060 79bfd5c1a3599873729defa2d514ebe4 928 Pfam PF00311 Phosphoenolpyruvate carboxylase 153 928 9.0E-239 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 trd_1236 677c13e1ab272511fd379629c322dbf0 551 Pfam PF00117 Glutamine amidotransferase class-I 302 523 3.7E-54 T 13-10-2018 IPR017926 Glutamine amidotransferase trd_1236 677c13e1ab272511fd379629c322dbf0 551 Pfam PF06418 CTP synthase N-terminus 3 265 6.8E-126 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 trd_1236 677c13e1ab272511fd379629c322dbf0 551 TIGRFAM TIGR00337 PyrG: CTP synthase 3 523 1.2E-242 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 trd_1236 677c13e1ab272511fd379629c322dbf0 551 Hamap MF_01227 CTP synthase [pyrG]. 2 530 51.832 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 trd_1236 677c13e1ab272511fd379629c322dbf0 551 SUPERFAMILY SSF52540 2 269 1.89E-120 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1236 677c13e1ab272511fd379629c322dbf0 551 Gene3D G3DSA:3.40.50.880 288 538 3.3E-101 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1236 677c13e1ab272511fd379629c322dbf0 551 SUPERFAMILY SSF52317 289 529 3.32E-81 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1236 677c13e1ab272511fd379629c322dbf0 551 Gene3D G3DSA:3.40.50.300 1 286 1.5E-131 T 13-10-2018 trd_A0273 41da5df84f2a631c5dfb7e3a796c80b7 127 TIGRFAM TIGR03879 near_KaiC_dom: probable regulatory domain 26 118 3.1E-25 T 13-10-2018 IPR022285 Conserved hypothetical protein CHP03879, regulatory domain, putative trd_1380 572513628bc55de8d45f9fbd4a52f37b 67 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 2.7E-20 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 trd_1380 572513628bc55de8d45f9fbd4a52f37b 67 Pfam PF02416 mttA/Hcf106 family 4 54 1.2E-20 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 trd_1380 572513628bc55de8d45f9fbd4a52f37b 67 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 64 19.699 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 trd_0273 e986ea49d1f0f57ba8b447ec68ca5b82 987 Pfam PF12704 MacB-like periplasmic core domain 52 265 9.8E-13 T 13-10-2018 IPR025857 MacB-like periplasmic core domain trd_0273 e986ea49d1f0f57ba8b447ec68ca5b82 987 Pfam PF02687 FtsX-like permease family 340 435 5.9E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 trd_0273 e986ea49d1f0f57ba8b447ec68ca5b82 987 Pfam PF02687 FtsX-like permease family 884 979 1.6E-11 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 SUPERFAMILY SSF51604 108 299 1.2E-43 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 95 120 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 SUPERFAMILY SSF54826 21 120 6.57E-22 T 13-10-2018 trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 28 120 6.2E-11 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 SMART SM00922 141 266 2.3E-21 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 216 247 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 Gene3D G3DSA:3.30.390.10 16 117 1.8E-23 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 Gene3D G3DSA:3.20.20.120 118 303 1.4E-53 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_0911 1ec781faaa6793e7c8d3781b444a2884 379 Pfam PF13378 Enolase C-terminal domain-like 148 299 2.7E-28 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 Gene3D G3DSA:2.40.50.530 1 65 8.1E-22 T 13-10-2018 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.1E-11 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.1E-11 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.1E-11 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 SUPERFAMILY SSF143034 2 64 3.79E-20 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 Pfam PF01632 Ribosomal protein L35 2 62 1.6E-18 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 2.0E-21 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 trd_0828 3232223a3a9a0d1980cfeeea93907baa 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.679 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 SUPERFAMILY SSF82866 265 465 1.31E-37 T 13-10-2018 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 220 452 4.0E-66 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 Gene3D G3DSA:3.30.70.3400 63 291 4.2E-51 T 13-10-2018 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 Pfam PF07549 SecD/SecF GG Motif 40 60 1.8E-4 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 Gene3D G3DSA:3.30.1360.200 120 286 4.2E-51 T 13-10-2018 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 42 459 1.4E-120 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 474 38.627 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 Pfam PF02355 Protein export membrane protein 288 462 1.9E-15 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 304 327 1.4E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.4E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 1 20 1.4E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 trd_0650 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 357 381 1.4E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 trd_0752 8fdf16d7e2ab210e4aa14a97bda9a082 133 SUPERFAMILY SSF51230 6 128 2.75E-46 T 13-10-2018 IPR011053 Single hybrid motif trd_0752 8fdf16d7e2ab210e4aa14a97bda9a082 133 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 7 128 6.2E-51 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 trd_0752 8fdf16d7e2ab210e4aa14a97bda9a082 133 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 trd_0752 8fdf16d7e2ab210e4aa14a97bda9a082 133 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 6 127 39.712 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 trd_0752 8fdf16d7e2ab210e4aa14a97bda9a082 133 Gene3D G3DSA:2.40.50.100 3 132 9.1E-55 T 13-10-2018 trd_0752 8fdf16d7e2ab210e4aa14a97bda9a082 133 Pfam PF01597 Glycine cleavage H-protein 9 128 3.9E-49 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate trd_0503 4dee45a7dab97738d08968198655399f 222 SUPERFAMILY SSF63380 94 195 4.85E-27 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel trd_0503 4dee45a7dab97738d08968198655399f 222 Gene3D G3DSA:2.40.30.20 103 201 5.4E-31 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_0503 4dee45a7dab97738d08968198655399f 222 Gene3D G3DSA:2.40.30.20 2 89 3.5E-28 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 trd_0503 4dee45a7dab97738d08968198655399f 222 SUPERFAMILY SSF63380 2 89 9.35E-24 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel trd_0503 4dee45a7dab97738d08968198655399f 222 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 2 197 1.4E-61 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0503 4dee45a7dab97738d08968198655399f 222 PIRSF PIRSF000498 2 208 2.3E-64 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0503 4dee45a7dab97738d08968198655399f 222 Pfam PF00677 Lumazine binding domain 4 88 1.6E-20 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_0503 4dee45a7dab97738d08968198655399f 222 Pfam PF00677 Lumazine binding domain 101 185 3.3E-20 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 trd_A0639 f364ce918dd48f118654def515b919ea 310 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 162 2.2E-32 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 trd_A0639 f364ce918dd48f118654def515b919ea 310 Gene3D G3DSA:3.40.50.720 1 165 1.1E-40 T 13-10-2018 trd_A0639 f364ce918dd48f118654def515b919ea 310 SUPERFAMILY SSF51735 6 166 5.92E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0639 f364ce918dd48f118654def515b919ea 310 PIRSF PIRSF000103 1 295 9.7E-64 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 trd_A0639 f364ce918dd48f118654def515b919ea 310 Gene3D G3DSA:1.10.1040.10 166 297 2.8E-30 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 trd_A0639 f364ce918dd48f118654def515b919ea 310 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 287 3.7E-25 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 trd_A0639 f364ce918dd48f118654def515b919ea 310 SUPERFAMILY SSF48179 166 289 1.47E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0082 7a3faed02622842989768bf2e7730ddf 475 SUPERFAMILY SSF53822 80 439 2.53E-66 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_A0082 7a3faed02622842989768bf2e7730ddf 475 Pfam PF13458 Periplasmic binding protein 80 425 3.9E-60 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_A0082 7a3faed02622842989768bf2e7730ddf 475 Gene3D G3DSA:3.40.50.2300 81 417 3.7E-83 T 13-10-2018 trd_A0082 7a3faed02622842989768bf2e7730ddf 475 Gene3D G3DSA:3.40.50.2300 199 418 3.7E-83 T 13-10-2018 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Pfam PF02938 GAD domain 325 422 7.4E-23 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Pfam PF01336 OB-fold nucleic acid binding domain 31 116 4.3E-18 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 491 507 1.1E-20 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 535 549 1.1E-20 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 206 218 1.1E-20 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 223 236 1.1E-20 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Pfam PF00152 tRNA synthetases class II (D, K and N) 134 575 2.8E-101 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 14 601 6.9E-229 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF50249 15 119 1.16E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:3.30.1360.30 289 436 6.4E-193 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:3.30.930.10 132 599 6.4E-193 T 13-10-2018 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:2.40.50.140 8 121 5.9E-35 T 13-10-2018 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 14 601 34.325 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF55261 306 436 6.7E-36 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 trd_0853 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF55681 127 601 3.25E-100 T 13-10-2018 trd_A0377 32e3c255042ab923b354927080f2549a 254 Gene3D G3DSA:3.10.180.10 1 131 1.9E-15 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0377 32e3c255042ab923b354927080f2549a 254 SUPERFAMILY SSF54593 1 181 1.09E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0377 32e3c255042ab923b354927080f2549a 254 Pfam PF13468 Glyoxalase-like domain 5 180 2.1E-46 T 13-10-2018 IPR025870 Glyoxalase-like domain trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.7E-6 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.7E-6 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.3E-13 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 4.3E-13 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.3E-13 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 SUPERFAMILY SSF52317 1 189 1.16E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 Pfam PF00117 Glutamine amidotransferase class-I 3 187 1.6E-52 T 13-10-2018 IPR017926 Glutamine amidotransferase trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 Gene3D G3DSA:3.40.50.880 1 189 1.5E-62 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 1.0E-76 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.7E-35 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.7E-35 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.7E-35 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.7E-35 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 164 177 1.7E-35 T 13-10-2018 trd_0103 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.7E-35 T 13-10-2018 trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 Gene3D G3DSA:1.10.8.10 2 85 4.0E-26 T 13-10-2018 trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 3 275 1.9E-48 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 26 275 4.6E-63 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 Pfam PF13847 Methyltransferase domain 113 240 1.4E-8 T 13-10-2018 IPR025714 Methyltransferase domain trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 279 38.004 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 SUPERFAMILY SSF53335 9 253 1.37E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0090 68547fb8794dc4fca08bc697c6cc2e11 283 Gene3D G3DSA:3.40.50.150 86 280 1.6E-44 T 13-10-2018 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 SUPERFAMILY SSF50621 275 416 1.81E-43 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 Gene3D G3DSA:3.20.20.10 46 265 2.9E-116 T 13-10-2018 IPR029066 PLP-binding barrel trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 Hamap MF_01201 Alanine racemase. 37 410 30.93 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 Pfam PF01168 Alanine racemase, N-terminal domain 44 269 2.5E-66 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 SMART SM01005 282 410 1.9E-53 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 TIGRFAM TIGR00492 alr: alanine racemase 41 409 1.1E-95 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 Gene3D G3DSA:2.40.37.10 43 409 2.9E-116 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 SUPERFAMILY SSF51419 44 283 1.83E-60 T 13-10-2018 IPR029066 PLP-binding barrel trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 63 79 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 242 269 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 336 353 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 160 172 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 194 205 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 99 117 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 298 313 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 315 330 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 PRINTS PR00992 Alanine racemase signature 392 405 4.4E-56 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 68 78 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_A0156 a6e4bb804d7afc851cbac7fa091db2d0 433 Pfam PF00842 Alanine racemase, C-terminal domain 282 409 5.2E-39 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_1197 8ca1b872872ac721674f49df01a49f21 344 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 221 233 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site trd_1197 8ca1b872872ac721674f49df01a49f21 344 Gene3D G3DSA:1.10.600.10 7 343 4.0E-99 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily trd_1197 8ca1b872872ac721674f49df01a49f21 344 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 92 106 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site trd_1197 8ca1b872872ac721674f49df01a49f21 344 Pfam PF00348 Polyprenyl synthetase 53 294 1.0E-61 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 trd_1197 8ca1b872872ac721674f49df01a49f21 344 SUPERFAMILY SSF48576 12 336 2.88E-80 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily trd_0848 3bde186dc8c6879eadb06fec55f8cf20 99 Pfam PF01649 Ribosomal protein S20 2 84 7.9E-27 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0848 3bde186dc8c6879eadb06fec55f8cf20 99 Gene3D G3DSA:1.20.58.110 1 97 7.3E-29 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0848 3bde186dc8c6879eadb06fec55f8cf20 99 SUPERFAMILY SSF46992 3 87 2.75E-28 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0848 3bde186dc8c6879eadb06fec55f8cf20 99 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.95 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0848 3bde186dc8c6879eadb06fec55f8cf20 99 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 32 84 2.0E-8 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0848 3bde186dc8c6879eadb06fec55f8cf20 99 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 1.1E-21 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 SUPERFAMILY SSF46785 11 94 4.77E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 2.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 14 29 2.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 46 61 2.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 Gene3D G3DSA:1.10.10.10 1 101 2.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 Pfam PF01022 Bacterial regulatory protein, arsR family 19 63 3.5E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_1529 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 SMART SM00418 12 90 3.7E-26 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_A0526 a34d73f27005dc07b292e8a48de8e3c9 324 Gene3D G3DSA:3.30.1490.100 81 177 4.5E-6 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 trd_A0526 a34d73f27005dc07b292e8a48de8e3c9 324 SUPERFAMILY SSF100879 82 165 4.71E-6 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 trd_A0526 a34d73f27005dc07b292e8a48de8e3c9 324 Gene3D G3DSA:1.10.150.20 22 71 1.2E-5 T 13-10-2018 trd_A0526 a34d73f27005dc07b292e8a48de8e3c9 324 SUPERFAMILY SSF56672 6 71 1.42E-10 T 13-10-2018 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 57 180 4.3E-46 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 30 187 28.502 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 139 160 - T 13-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 SUPERFAMILY SSF143243 33 187 1.44E-50 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 56 178 8.7E-43 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 112 175 2.0E-17 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1782 6ae5e4c8890c178168e9845e088e8792 204 Gene3D G3DSA:3.30.460.80 13 158 1.3E-44 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1211 a4c80a95940ea1b9ae4ed335fc23ffdd 106 Pfam PF02625 XdhC and CoxI family 11 78 2.9E-27 T 13-10-2018 IPR003777 XdhC- CoxI trd_A0828 5abddcac8959bf3b881cad91ea15de39 560 ProSitePatterns PS00455 Putative AMP-binding domain signature. 201 212 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_A0828 5abddcac8959bf3b881cad91ea15de39 560 SUPERFAMILY SSF56801 22 554 4.19E-157 T 13-10-2018 trd_A0828 5abddcac8959bf3b881cad91ea15de39 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 466 541 4.7E-27 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_A0828 5abddcac8959bf3b881cad91ea15de39 560 Gene3D G3DSA:3.40.50.12780 24 452 2.8E-120 T 13-10-2018 trd_A0828 5abddcac8959bf3b881cad91ea15de39 560 Gene3D G3DSA:3.30.300.310 453 555 1.5E-39 T 13-10-2018 trd_A0828 5abddcac8959bf3b881cad91ea15de39 560 Pfam PF00501 AMP-binding enzyme 35 457 2.5E-104 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_A0253 b5c7229b9f814eb24be9a74dae344b82 212 SUPERFAMILY SSF53271 35 207 8.39E-29 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_A0253 b5c7229b9f814eb24be9a74dae344b82 212 Pfam PF00156 Phosphoribosyl transferase domain 47 165 4.5E-12 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_A0253 b5c7229b9f814eb24be9a74dae344b82 212 Gene3D G3DSA:3.40.50.2020 4 211 5.7E-47 T 13-10-2018 trd_0229 4160392da857da5460248465359e47d7 344 Gene3D G3DSA:3.40.50.720 8 306 1.6E-117 T 13-10-2018 trd_0229 4160392da857da5460248465359e47d7 344 Gene3D G3DSA:3.90.25.10 194 313 1.6E-117 T 13-10-2018 trd_0229 4160392da857da5460248465359e47d7 344 SUPERFAMILY SSF51735 8 331 4.1E-100 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0229 4160392da857da5460248465359e47d7 344 Pfam PF16363 GDP-mannose 4,6 dehydratase 10 306 2.2E-75 T 13-10-2018 IPR016040 NAD(P)-binding domain trd_0229 4160392da857da5460248465359e47d7 344 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 319 2.8E-125 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 185 356 4.6E-41 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 Gene3D G3DSA:3.40.50.11540 190 368 4.6E-69 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF142984 378 461 3.27E-15 T 13-10-2018 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 SMART SM00928 466 511 7.4E-20 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 468 551 1.8E-25 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF142019 136 377 5.49E-80 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF140490 462 563 7.85E-33 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 479 490 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF52833 30 111 1.68E-7 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0793 39dd6dc43babb01d7a6efd97feece053 574 Gene3D G3DSA:3.40.30.10 34 120 4.0E-5 T 13-10-2018 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 Gene3D G3DSA:1.20.1440.230 464 562 3.5E-28 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0793 39dd6dc43babb01d7a6efd97feece053 574 Gene3D G3DSA:3.10.20.600 369 463 2.2E-25 T 13-10-2018 trd_1952 afea58dbfb7e09b21a48bc81adc6c105 614 PIRSF PIRSF002741 91 581 3.6E-48 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1952 afea58dbfb7e09b21a48bc81adc6c105 614 Gene3D G3DSA:3.90.76.10 86 240 5.2E-129 T 13-10-2018 trd_1952 afea58dbfb7e09b21a48bc81adc6c105 614 SUPERFAMILY SSF53850 91 603 9.95E-76 T 13-10-2018 trd_1952 afea58dbfb7e09b21a48bc81adc6c105 614 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 118 509 2.7E-50 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1952 afea58dbfb7e09b21a48bc81adc6c105 614 Gene3D G3DSA:3.40.190.10 241 600 5.2E-129 T 13-10-2018 trd_1952 afea58dbfb7e09b21a48bc81adc6c105 614 Gene3D G3DSA:3.10.105.10 337 573 5.2E-129 T 13-10-2018 trd_0865 80ee04bcff020dcce509ff5c8246b06b 198 Pfam PF01966 HD domain 24 133 9.6E-6 T 13-10-2018 IPR006674 HD domain trd_0865 80ee04bcff020dcce509ff5c8246b06b 198 Gene3D G3DSA:1.10.3210.10 1 193 3.6E-44 T 13-10-2018 trd_0865 80ee04bcff020dcce509ff5c8246b06b 198 SUPERFAMILY SSF109604 20 194 9.42E-39 T 13-10-2018 trd_0649 d8d19925a8686510876786e39c1025c9 307 Pfam PF02355 Protein export membrane protein 97 290 1.3E-57 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial trd_0649 d8d19925a8686510876786e39c1025c9 307 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 2 292 26.961 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 trd_0649 d8d19925a8686510876786e39c1025c9 307 SUPERFAMILY SSF82866 88 293 1.28E-32 T 13-10-2018 trd_0649 d8d19925a8686510876786e39c1025c9 307 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 30 281 2.1E-67 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 trd_0649 d8d19925a8686510876786e39c1025c9 307 Pfam PF07549 SecD/SecF GG Motif 24 51 2.0E-6 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site trd_0649 d8d19925a8686510876786e39c1025c9 307 Gene3D G3DSA:1.20.1640.10 116 304 4.3E-8 T 13-10-2018 trd_0649 d8d19925a8686510876786e39c1025c9 307 PRINTS PR01755 Bacterial translocase SecF protein signature 29 44 8.6E-19 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial trd_0649 d8d19925a8686510876786e39c1025c9 307 PRINTS PR01755 Bacterial translocase SecF protein signature 229 244 8.6E-19 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial trd_0649 d8d19925a8686510876786e39c1025c9 307 PRINTS PR01755 Bacterial translocase SecF protein signature 197 215 8.6E-19 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial trd_A0702 35bcd99fdea6dc468032aaa017258d6a 300 Pfam PF06267 Family of unknown function (DUF1028) 5 199 4.3E-83 T 13-10-2018 IPR010430 Protein of unknown function DUF1028 trd_A0702 35bcd99fdea6dc468032aaa017258d6a 300 SUPERFAMILY SSF56235 5 222 4.63E-78 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_A0702 35bcd99fdea6dc468032aaa017258d6a 300 Pfam PF08823 Putative peptidoglycan binding domain 209 283 1.0E-18 T 13-10-2018 IPR014927 Putative peptidoglycan binding trd_A0702 35bcd99fdea6dc468032aaa017258d6a 300 Gene3D G3DSA:3.60.20.10 3 213 2.6E-88 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_A0877 e430c34b041a5f1ab77db7ccdb47a3e1 352 SUPERFAMILY SSF101821 69 176 1.45E-20 T 13-10-2018 trd_A0877 e430c34b041a5f1ab77db7ccdb47a3e1 352 Pfam PF05343 M42 glutamyl aminopeptidase 45 334 1.7E-89 T 13-10-2018 IPR008007 Peptidase M42 trd_A0877 e430c34b041a5f1ab77db7ccdb47a3e1 352 Gene3D G3DSA:2.40.30.40 68 160 1.2E-119 T 13-10-2018 IPR023367 Peptidase M42, domain 2 trd_A0877 e430c34b041a5f1ab77db7ccdb47a3e1 352 Gene3D G3DSA:3.40.630.10 7 334 1.2E-119 T 13-10-2018 trd_A0877 e430c34b041a5f1ab77db7ccdb47a3e1 352 SUPERFAMILY SSF53187 5 342 3.49E-68 T 13-10-2018 trd_A0877 e430c34b041a5f1ab77db7ccdb47a3e1 352 PIRSF PIRSF001123 1 350 1.4E-107 T 13-10-2018 IPR008007 Peptidase M42 trd_0246 fdb2c02ee6501b6b7afee70cb774ccc4 338 Gene3D G3DSA:3.20.20.100 4 309 1.5E-56 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily trd_0246 fdb2c02ee6501b6b7afee70cb774ccc4 338 Pfam PF00248 Aldo/keto reductase family 21 308 2.3E-43 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain trd_0246 fdb2c02ee6501b6b7afee70cb774ccc4 338 SUPERFAMILY SSF51430 4 308 4.19E-57 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily trd_A0604 f1e736e9c3a1941edcc4e5031a8c9bf7 269 Gene3D G3DSA:3.40.50.300 2 257 5.3E-68 T 13-10-2018 trd_A0604 f1e736e9c3a1941edcc4e5031a8c9bf7 269 SUPERFAMILY SSF52540 2 234 1.17E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0604 f1e736e9c3a1941edcc4e5031a8c9bf7 269 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0604 f1e736e9c3a1941edcc4e5031a8c9bf7 269 SMART SM00382 27 218 1.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0604 f1e736e9c3a1941edcc4e5031a8c9bf7 269 Pfam PF00005 ABC transporter 20 169 9.5E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0382 ba03a1ac8611c397565e5eddd6aadaa1 143 Gene3D G3DSA:3.30.1490.190 76 140 8.9E-15 T 13-10-2018 trd_0382 ba03a1ac8611c397565e5eddd6aadaa1 143 Gene3D G3DSA:1.10.10.10 2 74 4.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0382 ba03a1ac8611c397565e5eddd6aadaa1 143 Pfam PF01475 Ferric uptake regulator family 4 117 3.3E-30 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 trd_0382 ba03a1ac8611c397565e5eddd6aadaa1 143 SUPERFAMILY SSF46785 4 125 2.98E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1736 f603cd1949c369e4c3278086aa0a1802 698 Pfam PF16075 Domain of unknown function (DUF4815) 132 225 1.1E-10 T 13-10-2018 IPR032096 Domain of unknown function DUF4815 trd_A0458 08b7174447a4c1213c88cf52d58a93ac 258 Gene3D G3DSA:3.40.50.1000 7 235 2.6E-72 T 13-10-2018 IPR023214 HAD superfamily trd_A0458 08b7174447a4c1213c88cf52d58a93ac 258 Pfam PF13344 Haloacid dehalogenase-like hydrolase 7 101 7.0E-24 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_A0458 08b7174447a4c1213c88cf52d58a93ac 258 Gene3D G3DSA:3.40.50.1000 87 179 2.6E-72 T 13-10-2018 IPR023214 HAD superfamily trd_A0458 08b7174447a4c1213c88cf52d58a93ac 258 Pfam PF13242 HAD-hyrolase-like 179 249 5.0E-17 T 13-10-2018 trd_A0458 08b7174447a4c1213c88cf52d58a93ac 258 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 7 228 2.4E-43 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_A0458 08b7174447a4c1213c88cf52d58a93ac 258 SUPERFAMILY SSF56784 4 251 7.75E-61 T 13-10-2018 IPR036412 HAD-like superfamily trd_0632 2aa91ff951970bd405838114c08e110c 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 225 1.6E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_0632 2aa91ff951970bd405838114c08e110c 234 SMART SM00448 4 114 3.1E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_0632 2aa91ff951970bd405838114c08e110c 234 SUPERFAMILY SSF52172 1 174 1.19E-38 T 13-10-2018 IPR011006 CheY-like superfamily trd_0632 2aa91ff951970bd405838114c08e110c 234 Gene3D G3DSA:1.10.10.10 125 228 2.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0632 2aa91ff951970bd405838114c08e110c 234 SMART SM00862 149 225 6.1E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_0632 2aa91ff951970bd405838114c08e110c 234 Gene3D G3DSA:3.40.50.2300 1 124 2.6E-33 T 13-10-2018 trd_0632 2aa91ff951970bd405838114c08e110c 234 Pfam PF00072 Response regulator receiver domain 6 115 3.2E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1226 84a9ceaedd9134f5266966a6a80d54b9 424 Gene3D G3DSA:3.65.10.10 14 421 7.5E-151 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 trd_1226 84a9ceaedd9134f5266966a6a80d54b9 424 Gene3D G3DSA:3.65.10.10 27 236 7.5E-151 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 trd_1226 84a9ceaedd9134f5266966a6a80d54b9 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 7 424 38.816 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_1226 84a9ceaedd9134f5266966a6a80d54b9 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 9 422 3.7E-147 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 trd_1226 84a9ceaedd9134f5266966a6a80d54b9 424 SUPERFAMILY SSF55205 9 423 1.18E-121 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 trd_1226 84a9ceaedd9134f5266966a6a80d54b9 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 17 414 2.6E-89 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 trd_A0748 5f32a5260e6d247512fdd867da176e32 286 SUPERFAMILY SSF52768 3 280 1.48E-60 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily trd_A0748 5f32a5260e6d247512fdd867da176e32 286 PRINTS PR00116 Arginase signature 67 82 4.5E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_A0748 5f32a5260e6d247512fdd867da176e32 286 PRINTS PR00116 Arginase signature 203 232 4.5E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_A0748 5f32a5260e6d247512fdd867da176e32 286 Pfam PF00491 Arginase family 19 274 5.7E-56 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_A0748 5f32a5260e6d247512fdd867da176e32 286 PIRSF PIRSF036979 1 282 3.1E-51 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 trd_A0748 5f32a5260e6d247512fdd867da176e32 286 Gene3D G3DSA:3.40.800.10 1 281 1.1E-68 T 13-10-2018 trd_1877 77e3862c0f6bccaea07d882e0bb4f17e 588 SUPERFAMILY SSF56762 9 567 7.2E-109 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1877 77e3862c0f6bccaea07d882e0bb4f17e 588 Pfam PF00374 Nickel-dependent hydrogenase 49 130 1.6E-16 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 trd_1877 77e3862c0f6bccaea07d882e0bb4f17e 588 Pfam PF00374 Nickel-dependent hydrogenase 172 567 8.3E-46 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 trd_1877 77e3862c0f6bccaea07d882e0bb4f17e 588 Gene3D G3DSA:1.10.645.10 11 567 6.6E-230 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 SMART SM00228 247 325 7.1E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 Gene3D G3DSA:2.40.10.120 46 242 3.4E-10 T 13-10-2018 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 Gene3D G3DSA:2.60.120.560 361 542 1.6E-7 T 13-10-2018 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 Pfam PF13180 PDZ domain 249 322 1.2E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 Gene3D G3DSA:2.30.42.10 248 344 5.4E-12 T 13-10-2018 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 SUPERFAMILY SSF50156 226 325 2.1E-11 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_A0292 44d9a30f353a30aab86b115d4fc1f6b5 558 SUPERFAMILY SSF50494 54 192 1.55E-11 T 13-10-2018 IPR009003 Peptidase S1, PA clan trd_1128 f1e685799a28f85a11a8084e425518fc 287 Pfam PF01066 CDP-alcohol phosphatidyltransferase 55 113 6.4E-7 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 trd_1128 f1e685799a28f85a11a8084e425518fc 287 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 93 115 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 trd_1128 f1e685799a28f85a11a8084e425518fc 287 Gene3D G3DSA:1.20.120.1760 27 217 4.5E-23 T 13-10-2018 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 8 185 1.1E-28 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 183 196 1.7E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 1.7E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 44 57 1.7E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 156 176 1.7E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 1.7E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 1.7E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 85 194 1.4E-15 T 13-10-2018 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 Gene3D G3DSA:1.10.150.240 20 92 5.1E-70 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 Gene3D G3DSA:3.40.50.1000 9 218 5.1E-70 T 13-10-2018 IPR023214 HAD superfamily trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 6 199 1.0E-62 T 13-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 trd_A0854 079f7d0ef6b8c3248c55c8bb17970e8d 222 SUPERFAMILY SSF56784 5 218 8.0E-52 T 13-10-2018 IPR036412 HAD-like superfamily trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SUPERFAMILY SSF51126 58 348 8.24E-9 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SUPERFAMILY SSF51126 251 554 3.37E-15 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 Pfam PF13229 Right handed beta helix region 321 483 1.3E-5 T 13-10-2018 IPR039448 Right handed beta helix domain trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 Pfam PF13229 Right handed beta helix region 503 668 2.8E-6 T 13-10-2018 IPR039448 Right handed beta helix domain trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SUPERFAMILY SSF51126 543 797 8.64E-17 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 TIGRFAM TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat 176 195 0.0025 T 13-10-2018 IPR003368 Polymorphic outer membrane protein repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 409 431 660.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 239 260 2400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 540 561 5900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 292 326 1100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 565 586 1100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 139 171 7300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 509 536 2000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 614 640 5000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 175 196 4100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 587 613 8200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_A0641 b1796a5edf2608b61f9a0967dc702c59 899 SMART SM00710 644 665 6200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 SUPERFAMILY SSF52335 2 191 3.4E-56 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 SMART SM00798 131 439 8.1E-128 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 Gene3D G3DSA:3.40.140.20 376 504 1.1E-54 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 SMART SM00851 12 126 2.4E-42 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 PIRSF PIRSF000414 1 504 7.8E-180 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 Gene3D G3DSA:3.40.50.1380 1 196 4.3E-75 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 Gene3D G3DSA:3.40.140.20 200 351 5.1E-48 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 SUPERFAMILY SSF53927 203 504 9.53E-109 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2 504 1.1E-168 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 Pfam PF01808 AICARFT/IMPCHase bienzyme 131 437 9.8E-96 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 Pfam PF02142 MGS-like domain 13 126 2.3E-19 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain trd_0867 6527a5e7004982bd5333f08208ef0e9f 504 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 1 504 38.636 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 trd_0965 d79884ee5925928553788fa65a6e818d 432 Gene3D G3DSA:1.10.3370.10 1 427 3.1E-157 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0965 d79884ee5925928553788fa65a6e818d 432 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 400 418 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 266 285 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 68 88 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 109 132 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 3.8E-88 T 13-10-2018 trd_0965 d79884ee5925928553788fa65a6e818d 432 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 431 28.032 T 13-10-2018 IPR026593 Protein translocase subunit SecY trd_0965 d79884ee5925928553788fa65a6e818d 432 Pfam PF00344 SecY translocase 69 415 2.9E-104 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0965 d79884ee5925928553788fa65a6e818d 432 ProSitePatterns PS00755 Protein secY signature 1. 69 88 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0965 d79884ee5925928553788fa65a6e818d 432 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 427 4.1E-115 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0965 d79884ee5925928553788fa65a6e818d 432 PIRSF PIRSF004557 1 432 8.5E-118 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0965 d79884ee5925928553788fa65a6e818d 432 SUPERFAMILY SSF103491 1 422 2.48E-112 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_A0271 61c1b29a0a11c2da04a271ac2b9e97f4 171 Gene3D G3DSA:3.90.79.10 8 149 4.2E-21 T 13-10-2018 trd_A0271 61c1b29a0a11c2da04a271ac2b9e97f4 171 Pfam PF00293 NUDIX domain 13 137 4.4E-14 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_A0271 61c1b29a0a11c2da04a271ac2b9e97f4 171 SUPERFAMILY SSF55811 11 142 1.3E-18 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_0677 074ad2231d849f1cfafae29a6518d304 56 SUPERFAMILY SSF57829 4 56 3.43E-21 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 trd_0677 074ad2231d849f1cfafae29a6518d304 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 56 20.027 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0677 074ad2231d849f1cfafae29a6518d304 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 8.8E-26 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0677 074ad2231d849f1cfafae29a6518d304 56 Gene3D G3DSA:2.20.28.120 4 56 4.1E-25 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0677 074ad2231d849f1cfafae29a6518d304 56 Pfam PF00471 Ribosomal protein L33 10 56 7.2E-25 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0677 074ad2231d849f1cfafae29a6518d304 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 24 43 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 Pfam PF00772 DnaB-like helicase N terminal domain 13 113 7.4E-35 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 SUPERFAMILY SSF52540 186 434 1.01E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 Gene3D G3DSA:3.40.50.300 171 446 5.1E-109 T 13-10-2018 trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 Gene3D G3DSA:1.10.860.10 6 169 2.2E-57 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 12 442 2.4E-179 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 Pfam PF03796 DnaB-like helicase C terminal domain 188 441 1.6E-114 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 trd_0692 205b0010357b5c53ea3dcbacc9b073c6 450 SUPERFAMILY SSF48024 11 122 3.27E-38 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 trd_0671 affb8f08d73323bf627574fb057eb448 199 Pfam PF10531 SLBB domain 52 106 1.5E-11 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0671 affb8f08d73323bf627574fb057eb448 199 Gene3D G3DSA:3.10.560.10 40 121 3.9E-7 T 13-10-2018 trd_0671 affb8f08d73323bf627574fb057eb448 199 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 134 191 2.3E-16 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain trd_0671 affb8f08d73323bf627574fb057eb448 199 Pfam PF12836 Helix-hairpin-helix motif 132 194 8.4E-23 T 13-10-2018 trd_0671 affb8f08d73323bf627574fb057eb448 199 Gene3D G3DSA:1.10.150.280 126 197 5.1E-22 T 13-10-2018 trd_0671 affb8f08d73323bf627574fb057eb448 199 SUPERFAMILY SSF47781 125 198 1.22E-26 T 13-10-2018 IPR010994 RuvA domain 2-like trd_0671 affb8f08d73323bf627574fb057eb448 199 SMART SM00278 173 192 890.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0671 affb8f08d73323bf627574fb057eb448 199 SMART SM00278 143 162 0.0087 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_1227 b7df8157113512bfc9959088507ba8c7 151 Gene3D G3DSA:2.60.15.10 3 90 1.1E-28 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1227 b7df8157113512bfc9959088507ba8c7 151 SUPERFAMILY SSF46604 88 134 2.54E-6 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1227 b7df8157113512bfc9959088507ba8c7 151 Gene3D G3DSA:1.20.5.440 91 134 2.7E-8 T 13-10-2018 trd_1227 b7df8157113512bfc9959088507ba8c7 151 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-17 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1227 b7df8157113512bfc9959088507ba8c7 151 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 131 9.8E-10 T 13-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain trd_1227 b7df8157113512bfc9959088507ba8c7 151 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 131 2.1E-33 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1227 b7df8157113512bfc9959088507ba8c7 151 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 22.153 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1227 b7df8157113512bfc9959088507ba8c7 151 SUPERFAMILY SSF51344 5 86 1.44E-21 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1227 b7df8157113512bfc9959088507ba8c7 151 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 3.0E-26 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_A0100 a2f03aecbea72794e4cc5ed1520b758e 446 Gene3D G3DSA:3.20.20.370 233 443 9.3E-54 T 13-10-2018 trd_A0100 a2f03aecbea72794e4cc5ed1520b758e 446 Pfam PF01522 Polysaccharide deacetylase 287 405 8.1E-26 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 trd_A0100 a2f03aecbea72794e4cc5ed1520b758e 446 SUPERFAMILY SSF88713 252 419 2.37E-40 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_0683 81ec53b0e0158b065e76671e41a99338 179 SUPERFAMILY SSF160369 3 168 3.79E-51 T 13-10-2018 trd_0683 81ec53b0e0158b065e76671e41a99338 179 Gene3D G3DSA:3.30.70.1730 2 132 8.7E-37 T 13-10-2018 trd_0683 81ec53b0e0158b065e76671e41a99338 179 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0683 81ec53b0e0158b065e76671e41a99338 179 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 3 170 0.001 T 13-10-2018 trd_0683 81ec53b0e0158b065e76671e41a99338 179 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 159 25.141 T 13-10-2018 IPR022973 Ribosomal protein L10 trd_0683 81ec53b0e0158b065e76671e41a99338 179 Pfam PF00466 Ribosomal protein L10 5 98 5.1E-25 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 trd_0870 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF04294 VanW like protein 513 653 2.3E-40 T 13-10-2018 IPR007391 Vancomycin resistance VanW trd_0870 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF07501 G5 domain 669 736 1.2E-4 T 13-10-2018 IPR011098 G5 domain trd_0870 effd7af4c12ef78508c2ea53a6a09cfb 769 SMART SM01208 662 738 3.1E-9 T 13-10-2018 IPR011098 G5 domain trd_0870 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF12229 Putative peptidoglycan binding domain 103 211 3.4E-8 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain trd_0870 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF12229 Putative peptidoglycan binding domain 272 342 2.0E-9 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain trd_0870 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF12229 Putative peptidoglycan binding domain 398 473 6.6E-9 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain trd_A0402 ed33340b5a50cfbac22e20a36187ad2c 324 Pfam PF00294 pfkB family carbohydrate kinase 27 302 1.0E-37 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_A0402 ed33340b5a50cfbac22e20a36187ad2c 324 SUPERFAMILY SSF53613 8 300 4.83E-52 T 13-10-2018 IPR029056 Ribokinase-like trd_A0402 ed33340b5a50cfbac22e20a36187ad2c 324 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 6 319 1.5E-67 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 trd_A0402 ed33340b5a50cfbac22e20a36187ad2c 324 PIRSF PIRSF000535 5 321 6.9E-57 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 trd_A0402 ed33340b5a50cfbac22e20a36187ad2c 324 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 259 272 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 trd_A0402 ed33340b5a50cfbac22e20a36187ad2c 324 Gene3D G3DSA:3.40.1190.20 5 323 1.1E-81 T 13-10-2018 IPR029056 Ribokinase-like trd_A0075 482840b6a63aaf25d909ed05b2e835f2 323 Gene3D G3DSA:3.30.1490.20 6 190 1.5E-64 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_A0075 482840b6a63aaf25d909ed05b2e835f2 323 Gene3D G3DSA:3.30.470.20 192 323 1.3E-37 T 13-10-2018 trd_A0075 482840b6a63aaf25d909ed05b2e835f2 323 SUPERFAMILY SSF56059 7 322 1.09E-92 T 13-10-2018 trd_A0075 482840b6a63aaf25d909ed05b2e835f2 323 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 321 6.5E-88 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 trd_0280 aaa204c75d850b97d13a6a226cf72c39 237 Gene3D G3DSA:3.40.50.1000 4 214 1.1E-53 T 13-10-2018 IPR023214 HAD superfamily trd_0280 aaa204c75d850b97d13a6a226cf72c39 237 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 187 3.5E-15 T 13-10-2018 trd_0280 aaa204c75d850b97d13a6a226cf72c39 237 Gene3D G3DSA:1.10.150.240 18 86 1.1E-53 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 trd_0280 aaa204c75d850b97d13a6a226cf72c39 237 SUPERFAMILY SSF56784 4 227 7.74E-33 T 13-10-2018 IPR036412 HAD-like superfamily trd_A0439 08a396c5787a7a9641d9400688944cfe 166 Gene3D G3DSA:2.60.40.420 73 165 1.8E-24 T 13-10-2018 IPR008972 Cupredoxin trd_A0439 08a396c5787a7a9641d9400688944cfe 166 Pfam PF13473 Cupredoxin-like domain 82 165 9.3E-11 T 13-10-2018 IPR028096 EfeO-type cupredoxin-like domain trd_A0439 08a396c5787a7a9641d9400688944cfe 166 SUPERFAMILY SSF49503 72 165 2.33E-22 T 13-10-2018 IPR008972 Cupredoxin trd_1013 3290c419ddce8ae294f41791fd80fb8f 331 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 110 146 1.8E-8 T 13-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain trd_1013 3290c419ddce8ae294f41791fd80fb8f 331 SMART SM00858 44 106 1.6E-11 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 trd_1013 3290c419ddce8ae294f41791fd80fb8f 331 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 9 148 5.7E-27 T 13-10-2018 IPR017592 Pilus assembly, Flp-type CpaB trd_1013 3290c419ddce8ae294f41791fd80fb8f 331 Pfam PF08666 SAF domain 45 105 4.2E-11 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 Pfam PF07836 DmpG-like communication domain 273 332 1.1E-28 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 Gene3D G3DSA:3.20.20.70 6 267 2.8E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 SUPERFAMILY SSF89000 287 335 7.85E-17 T 13-10-2018 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 SUPERFAMILY SSF51569 5 274 1.7E-71 T 13-10-2018 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 275 335 2.0E-22 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 Gene3D G3DSA:1.10.8.60 274 340 6.4E-28 T 13-10-2018 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 342 186.066 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 Pfam PF00682 HMGL-like 8 263 1.3E-64 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 trd_1392 ec9fed9edbebebd264cb86c08d26d658 356 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 7 335 6.6E-169 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 Gene3D G3DSA:3.90.950.20 256 390 3.9E-8 T 13-10-2018 IPR036653 CinA-like, C-terminal trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 2 338 2.8E-73 T 13-10-2018 IPR008135 Competence-induced protein CinA trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 PIRSF PIRSF006728 1 399 2.6E-99 T 13-10-2018 IPR008135 Competence-induced protein CinA trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 Pfam PF00994 Probable molybdopterin binding domain 5 168 1.2E-35 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 Pfam PF02464 Competence-damaged protein 314 390 9.9E-6 T 13-10-2018 IPR008136 CinA, C-terminal trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 406 107.185 T 13-10-2018 IPR008135 Competence-induced protein CinA trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 SUPERFAMILY SSF142433 249 393 8.37E-11 T 13-10-2018 IPR036653 CinA-like, C-terminal trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 SMART SM00852 4 171 4.2E-38 T 13-10-2018 IPR001453 MoaB/Mog domain trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 Gene3D G3DSA:3.40.980.10 2 170 1.6E-50 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_1288 2e4bf3416d005365e85d30bd8b9a5821 406 SUPERFAMILY SSF53218 2 201 2.36E-37 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 SUPERFAMILY SSF51735 1 249 2.6E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 247 2.1E-71 T 13-10-2018 trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 Gene3D G3DSA:3.40.50.720 1 249 7.5E-89 T 13-10-2018 trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0248 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1102 82eaf5bab6b9156568af162695c7bb47 206 Gene3D G3DSA:3.40.30.10 41 206 7.5E-44 T 13-10-2018 trd_1102 82eaf5bab6b9156568af162695c7bb47 206 Pfam PF02630 SCO1/SenC 48 182 2.1E-26 T 13-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1102 82eaf5bab6b9156568af162695c7bb47 206 SUPERFAMILY SSF52833 44 205 4.99E-41 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1673 8872e1eefeb9a0c0e24d53a6cf3df479 292 SUPERFAMILY SSF161098 81 275 1.42E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_1673 8872e1eefeb9a0c0e24d53a6cf3df479 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 287 7.5E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1673 8872e1eefeb9a0c0e24d53a6cf3df479 292 Gene3D G3DSA:1.10.3720.10 75 290 2.8E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_0079 a9cc9afcf367960d5260f81e22818a61 301 SUPERFAMILY SSF52402 6 150 5.27E-21 T 13-10-2018 trd_0079 a9cc9afcf367960d5260f81e22818a61 301 SUPERFAMILY SSF52402 160 289 1.93E-27 T 13-10-2018 trd_0079 a9cc9afcf367960d5260f81e22818a61 301 Gene3D G3DSA:3.40.50.620 156 289 1.3E-27 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0079 a9cc9afcf367960d5260f81e22818a61 301 Pfam PF00582 Universal stress protein family 21 147 1.1E-13 T 13-10-2018 IPR006016 UspA trd_0079 a9cc9afcf367960d5260f81e22818a61 301 Pfam PF00582 Universal stress protein family 160 286 1.4E-23 T 13-10-2018 IPR006016 UspA trd_0079 a9cc9afcf367960d5260f81e22818a61 301 Gene3D G3DSA:3.40.50.620 11 148 7.3E-21 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0079 a9cc9afcf367960d5260f81e22818a61 301 PRINTS PR01438 Universal stress protein signature 248 260 1.5E-13 T 13-10-2018 IPR006015 Universal stress protein A trd_0079 a9cc9afcf367960d5260f81e22818a61 301 PRINTS PR01438 Universal stress protein signature 266 288 1.5E-13 T 13-10-2018 IPR006015 Universal stress protein A trd_0079 a9cc9afcf367960d5260f81e22818a61 301 PRINTS PR01438 Universal stress protein signature 159 177 1.5E-13 T 13-10-2018 IPR006015 Universal stress protein A trd_0777 0798a17563b5e58cb862df6242259d78 462 Gene3D G3DSA:3.40.50.12300 116 439 1.1E-116 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily trd_0777 0798a17563b5e58cb862df6242259d78 462 Hamap MF_00973 Gluconeogenesis factor. 116 427 35.571 T 13-10-2018 IPR010119 Gluconeogenesis factor trd_0777 0798a17563b5e58cb862df6242259d78 462 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 120 425 2.5E-108 T 13-10-2018 IPR010119 Gluconeogenesis factor trd_0777 0798a17563b5e58cb862df6242259d78 462 Pfam PF01933 Uncharacterised protein family UPF0052 120 401 7.8E-97 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 trd_0777 0798a17563b5e58cb862df6242259d78 462 SUPERFAMILY SSF142338 118 422 1.28E-95 T 13-10-2018 trd_A0348 7564266d64ce1e080df4822372dcb935 259 Gene3D G3DSA:3.90.850.10 42 256 1.9E-79 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_A0348 7564266d64ce1e080df4822372dcb935 259 SUPERFAMILY SSF56529 55 253 6.93E-79 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_A0348 7564266d64ce1e080df4822372dcb935 259 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 57 252 1.0E-65 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 trd_1674 544a2d835e809e92b4c4b12507827c79 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 306 1.5E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1674 544a2d835e809e92b4c4b12507827c79 314 Gene3D G3DSA:1.10.3720.10 65 313 3.9E-67 T 13-10-2018 IPR035906 MetI-like superfamily trd_1674 544a2d835e809e92b4c4b12507827c79 314 SUPERFAMILY SSF161098 69 303 1.31E-57 T 13-10-2018 IPR035906 MetI-like superfamily trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 Pfam PF01386 Ribosomal L25p family 8 93 1.2E-16 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 Gene3D G3DSA:2.40.240.10 7 95 3.7E-17 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 Gene3D G3DSA:2.170.120.20 99 191 1.1E-15 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 SUPERFAMILY SSF50715 6 190 4.71E-36 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 184 21.648 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 9 180 6.2E-25 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 93 5.0E-6 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 trd_1156 ce57769b8c9fc5525134cc92c27a1554 223 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 101 183 3.4E-16 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain trd_A0933 41e0f681b046e040f718665e9dd54eed 166 Gene3D G3DSA:2.60.120.10 42 154 2.5E-30 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_A0933 41e0f681b046e040f718665e9dd54eed 166 Pfam PF07883 Cupin domain 65 130 7.5E-18 T 13-10-2018 IPR013096 Cupin 2, conserved barrel trd_A0933 41e0f681b046e040f718665e9dd54eed 166 SUPERFAMILY SSF51182 32 146 3.15E-28 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_0706 60d6be0e254c256770e053955d2d5669 105 TIGRFAM TIGR02229 caa3_sub_IV: caa(3)-type oxidase, subunit IV 14 89 3.9E-11 T 13-10-2018 IPR011743 Caa(3)-type oxidase, subunit IV trd_0706 60d6be0e254c256770e053955d2d5669 105 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 17 88 4.4E-11 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 Gene3D G3DSA:3.40.50.1100 116 212 8.3E-152 T 13-10-2018 trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 PIRSF PIRSF038945 48 402 6.5E-131 T 13-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 Gene3D G3DSA:3.40.50.1100 30 395 8.3E-152 T 13-10-2018 trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 107 121 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 80 381 1.2E-72 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 SUPERFAMILY SSF53686 7 412 4.32E-108 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_1252 a4a1f95c8c7a49d9dd8e265e72d432ff 424 TIGRFAM TIGR00260 thrC: threonine synthase 63 388 3.7E-86 T 13-10-2018 IPR004450 Threonine synthase-like trd_0224 a4fb3711e909aa52014293c28ee87c0f 233 SUPERFAMILY SSF52540 6 224 4.05E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0224 a4fb3711e909aa52014293c28ee87c0f 233 Gene3D G3DSA:3.40.50.300 5 230 2.4E-75 T 13-10-2018 trd_0224 a4fb3711e909aa52014293c28ee87c0f 233 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0224 a4fb3711e909aa52014293c28ee87c0f 233 Pfam PF00005 ABC transporter 26 172 9.0E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0224 a4fb3711e909aa52014293c28ee87c0f 233 SMART SM00382 35 220 2.4E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0199 8b7056a7c0fdafae5b8623d69dc0c660 287 Pfam PF01513 ATP-NAD kinase 47 248 2.9E-46 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 trd_0199 8b7056a7c0fdafae5b8623d69dc0c660 287 Gene3D G3DSA:3.40.50.10330 14 258 2.4E-70 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 trd_0199 8b7056a7c0fdafae5b8623d69dc0c660 287 Hamap MF_00361 NAD kinase [nadK]. 3 265 27.204 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 trd_0199 8b7056a7c0fdafae5b8623d69dc0c660 287 Gene3D G3DSA:2.60.200.30 109 242 2.4E-70 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 trd_0199 8b7056a7c0fdafae5b8623d69dc0c660 287 SUPERFAMILY SSF111331 5 267 2.88E-65 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily trd_1692 ba0e0b8f71ec2820d67827044ec59073 172 SUPERFAMILY SSF52016 3 165 6.47E-55 T 13-10-2018 trd_1692 ba0e0b8f71ec2820d67827044ec59073 172 TIGRFAM TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit 5 160 2.4E-77 T 13-10-2018 IPR011824 Hydrolyase LeuD/DmdB, bacterial GO:0016836 KEGG: 00290+4.2.1.33 trd_1692 ba0e0b8f71ec2820d67827044ec59073 172 Gene3D G3DSA:3.20.19.10 2 170 6.6E-66 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 trd_1692 ba0e0b8f71ec2820d67827044ec59073 172 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 5 160 1.2E-68 T 13-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 trd_1692 ba0e0b8f71ec2820d67827044ec59073 172 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 3 163 41.32 T 13-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 trd_1692 ba0e0b8f71ec2820d67827044ec59073 172 Pfam PF00694 Aconitase C-terminal domain 38 102 1.1E-20 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 trd_0619 5318b3f479c65d1fe4907757d406c4a1 293 Pfam PF00535 Glycosyl transferase family 2 20 145 1.3E-32 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_0619 5318b3f479c65d1fe4907757d406c4a1 293 SUPERFAMILY SSF53448 17 244 2.13E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0619 5318b3f479c65d1fe4907757d406c4a1 293 Gene3D G3DSA:3.90.550.10 7 247 6.5E-50 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0376 1535b351659c4eab616f05ec5bbe9d66 201 Gene3D G3DSA:3.40.50.450 3 200 3.9E-80 T 13-10-2018 trd_A0376 1535b351659c4eab616f05ec5bbe9d66 201 Pfam PF03641 Possible lysine decarboxylase 53 182 1.8E-46 T 13-10-2018 IPR031100 LOG family trd_A0376 1535b351659c4eab616f05ec5bbe9d66 201 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 10 185 1.7E-64 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG trd_A0376 1535b351659c4eab616f05ec5bbe9d66 201 SUPERFAMILY SSF102405 9 186 8.85E-67 T 13-10-2018 trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 Pfam PF00271 Helicase conserved C-terminal domain 343 416 2.5E-5 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 Gene3D G3DSA:1.10.3380.30 720 932 2.9E-19 T 13-10-2018 trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 SMART SM01142 766 940 1.6E-34 T 13-10-2018 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 Pfam PF00270 DEAD/DEAH box helicase 30 177 4.5E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 SMART SM00487 24 208 2.4E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 SMART SM00490 330 416 5.8E-12 T 13-10-2018 IPR001650 Helicase, C-terminal trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 SUPERFAMILY SSF52540 39 429 3.25E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 Gene3D G3DSA:3.40.50.300 202 447 4.4E-59 T 13-10-2018 trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 Pfam PF08148 DSHCT (NUC185) domain 771 934 2.8E-22 T 13-10-2018 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal trd_0169 b08eabfe660a2e2ba617721a1a6d1e46 948 Gene3D G3DSA:3.40.50.300 6 200 9.9E-65 T 13-10-2018 trd_A0233 1ef14e454618e65a993399d7f158e5ce 506 Pfam PF12727 PBP superfamily domain 288 478 2.6E-55 T 13-10-2018 IPR024370 PBP domain trd_A0233 1ef14e454618e65a993399d7f158e5ce 506 SUPERFAMILY SSF47413 138 205 3.49E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 trd_A0233 1ef14e454618e65a993399d7f158e5ce 506 Pfam PF01381 Helix-turn-helix 145 199 2.5E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 trd_A0233 1ef14e454618e65a993399d7f158e5ce 506 SMART SM00530 144 199 3.0E-18 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 trd_A0233 1ef14e454618e65a993399d7f158e5ce 506 SUPERFAMILY SSF53850 282 491 1.03E-11 T 13-10-2018 trd_A0233 1ef14e454618e65a993399d7f158e5ce 506 Gene3D G3DSA:1.10.260.40 141 204 2.1E-19 T 13-10-2018 trd_0596 043af717d5565d8c394259f7e6e75124 307 Gene3D G3DSA:3.40.50.10800 8 287 1.9E-114 T 13-10-2018 trd_0596 043af717d5565d8c394259f7e6e75124 307 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 1 306 2.0E-101 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 trd_0596 043af717d5565d8c394259f7e6e75124 307 Gene3D G3DSA:3.40.50.10800 88 304 1.9E-114 T 13-10-2018 trd_0596 043af717d5565d8c394259f7e6e75124 307 SUPERFAMILY SSF142754 5 306 4.32E-109 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 trd_0596 043af717d5565d8c394259f7e6e75124 307 Gene3D G3DSA:3.40.50.10800 172 262 1.9E-114 T 13-10-2018 trd_0596 043af717d5565d8c394259f7e6e75124 307 Pfam PF02445 Quinolinate synthetase A protein 9 305 3.2E-113 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 trd_0596 043af717d5565d8c394259f7e6e75124 307 Hamap MF_00568 Quinolinate synthase A [nadA]. 4 306 44.609 T 13-10-2018 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 trd_1075 2569e1f8dd92c8fa05f58ba4a0b434ee 264 SUPERFAMILY SSF52540 3 224 7.72E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1075 2569e1f8dd92c8fa05f58ba4a0b434ee 264 Gene3D G3DSA:3.40.50.300 1 235 7.7E-67 T 13-10-2018 trd_1075 2569e1f8dd92c8fa05f58ba4a0b434ee 264 SMART SM00382 28 212 2.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1075 2569e1f8dd92c8fa05f58ba4a0b434ee 264 Pfam PF00005 ABC transporter 20 162 1.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1126 35f9829de6d7591af05a23186e3296b4 391 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 134 2.9E-12 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_1126 35f9829de6d7591af05a23186e3296b4 391 Gene3D G3DSA:3.50.50.60 110 261 8.9E-77 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1126 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 1.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_1126 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 98 106 1.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_1126 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 279 297 1.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 trd_1126 35f9829de6d7591af05a23186e3296b4 391 Gene3D G3DSA:3.50.50.60 5 320 8.9E-77 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1126 35f9829de6d7591af05a23186e3296b4 391 SUPERFAMILY SSF51905 2 323 9.39E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1126 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 3.4E-11 T 13-10-2018 trd_1126 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 3.4E-11 T 13-10-2018 trd_1126 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.4E-11 T 13-10-2018 trd_1126 35f9829de6d7591af05a23186e3296b4 391 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 176 312 2.0E-9 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 Gene3D G3DSA:2.40.50.970 1 84 1.7E-25 T 13-10-2018 IPR037254 HupF/HypC superfamily trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 Pfam PF01455 HupF/HypC family 2 69 3.2E-23 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.0E-18 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 19 35 1.0E-18 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 60 72 1.0E-18 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 42 58 1.0E-18 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 2 80 4.8E-21 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1869 934ae5c9950ca5e4270848b56d766c2a 91 SUPERFAMILY SSF159127 2 79 1.31E-21 T 13-10-2018 IPR037254 HupF/HypC superfamily trd_1913 c6baf7e869a844d4fe10cbf2fff6494e 155 Pfam PF12867 DinB superfamily 35 139 4.6E-11 T 13-10-2018 IPR024775 DinB-like domain trd_1913 c6baf7e869a844d4fe10cbf2fff6494e 155 SUPERFAMILY SSF109854 3 143 8.85E-19 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_1913 c6baf7e869a844d4fe10cbf2fff6494e 155 Gene3D G3DSA:1.20.120.450 3 149 2.7E-21 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_A0266 080317ddda6acacb173407a60c8eae55 332 Gene3D G3DSA:1.10.3720.10 89 330 2.2E-72 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0266 080317ddda6acacb173407a60c8eae55 332 SUPERFAMILY SSF161098 93 320 1.96E-63 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0266 080317ddda6acacb173407a60c8eae55 332 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 142 327 4.0E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 Pfam PF02769 AIR synthase related protein, C-terminal domain 164 315 2.4E-15 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 Gene3D G3DSA:3.30.1330.10 7 151 6.9E-43 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 13 338 1.1E-83 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 Pfam PF00586 AIR synthase related protein, N-terminal domain 37 149 2.8E-22 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 11 338 27.891 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 Gene3D G3DSA:3.90.650.10 158 338 9.4E-44 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 SUPERFAMILY SSF56042 157 311 9.72E-32 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 PIRSF PIRSF005303 6 338 2.3E-84 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 trd_0172 74a24c4155e0f89b6f860f48e4d31af3 341 SUPERFAMILY SSF55326 13 149 2.44E-31 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0747 794af8e35e42ff0007c160849bb70afe 89 SUPERFAMILY SSF82697 7 85 2.44E-25 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_0747 794af8e35e42ff0007c160849bb70afe 89 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 11 85 2.0E-28 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0747 794af8e35e42ff0007c160849bb70afe 89 Gene3D G3DSA:3.30.1280.10 7 89 3.0E-27 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 trd_0747 794af8e35e42ff0007c160849bb70afe 89 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 17 86 2.0E-18 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0747 794af8e35e42ff0007c160849bb70afe 89 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 10 87 1.5E-26 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0747 794af8e35e42ff0007c160849bb70afe 89 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 9 86 21.182 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SUPERFAMILY SSF55785 298 422 1.33E-10 T 13-10-2018 IPR035965 PAS domain superfamily trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Pfam PF13185 GAF domain 445 576 1.0E-13 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Gene3D G3DSA:3.30.450.40 421 580 1.1E-24 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SUPERFAMILY SSF55781 132 299 8.83E-8 T 13-10-2018 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 306 357 9.0E-6 T 13-10-2018 IPR000014 PAS domain trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SMART SM00267 581 751 2.1E-64 T 13-10-2018 IPR000160 GGDEF domain trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SUPERFAMILY SSF55073 597 750 1.02E-47 T 13-10-2018 IPR029787 Nucleotide cyclase trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Pfam PF00990 Diguanylate cyclase, GGDEF domain 592 746 8.4E-47 T 13-10-2018 IPR000160 GGDEF domain trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 588 749 4.5E-47 T 13-10-2018 IPR000160 GGDEF domain trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SMART SM00091 307 374 7.4E-5 T 13-10-2018 IPR000014 PAS domain trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Pfam PF13188 PAS domain 307 369 7.4E-8 T 13-10-2018 IPR000014 PAS domain trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Gene3D G3DSA:3.30.450.20 297 420 1.1E-8 T 13-10-2018 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Gene3D G3DSA:3.30.70.270 585 753 9.1E-58 T 13-10-2018 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SUPERFAMILY SSF55781 419 575 2.4E-22 T 13-10-2018 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 SMART SM00065 446 589 2.1E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_A0574 33b5141984e8295832a8a8f410c1ffe5 756 Gene3D G3DSA:3.30.450.40 134 296 1.4E-8 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1627 8d793a78d17834452de52935f9c05f47 316 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 2.1E-89 T 13-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 trd_1627 8d793a78d17834452de52935f9c05f47 316 Pfam PF01063 Amino-transferase class IV 53 268 7.8E-47 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 trd_1627 8d793a78d17834452de52935f9c05f47 316 SUPERFAMILY SSF56752 9 304 1.06E-82 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 trd_1627 8d793a78d17834452de52935f9c05f47 316 Gene3D G3DSA:3.30.470.10 4 131 1.3E-34 T 13-10-2018 trd_1627 8d793a78d17834452de52935f9c05f47 316 Gene3D G3DSA:3.20.10.10 132 306 3.3E-49 T 13-10-2018 trd_1627 8d793a78d17834452de52935f9c05f47 316 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 trd_A0751 3876561cdef363c398b62a7d1f7c6f47 255 Pfam PF04203 Sortase family 110 239 3.2E-14 T 13-10-2018 IPR005754 Sortase family trd_A0751 3876561cdef363c398b62a7d1f7c6f47 255 SUPERFAMILY SSF63817 108 237 1.2E-15 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0751 3876561cdef363c398b62a7d1f7c6f47 255 Gene3D G3DSA:2.40.260.10 105 249 3.3E-22 T 13-10-2018 IPR023365 Sortase domain superfamily trd_1303 ca3a26ea70cc786ffc64e09f3cd213a1 390 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 trd_1303 ca3a26ea70cc786ffc64e09f3cd213a1 390 SUPERFAMILY SSF53383 5 389 1.99E-123 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1303 ca3a26ea70cc786ffc64e09f3cd213a1 390 Pfam PF00155 Aminotransferase class I and II 34 384 1.5E-72 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_1303 ca3a26ea70cc786ffc64e09f3cd213a1 390 Gene3D G3DSA:3.40.640.10 65 286 2.0E-139 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1303 ca3a26ea70cc786ffc64e09f3cd213a1 390 Gene3D G3DSA:3.90.1150.10 28 384 2.0E-139 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 510 42.725 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 SUPERFAMILY SSF51569 1 292 7.69E-99 T 13-10-2018 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 Gene3D G3DSA:3.20.20.70 2 277 6.7E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 Gene3D G3DSA:1.10.238.260 281 392 1.1E-34 T 13-10-2018 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 Pfam PF00682 HMGL-like 5 274 1.1E-91 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 SMART SM00917 371 501 4.3E-34 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 SUPERFAMILY SSF110921 396 500 7.72E-26 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 498 2.3E-213 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 Gene3D G3DSA:3.30.160.270 393 502 2.4E-14 T 13-10-2018 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 500 1.9E-36 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1690 48451e5d325645a4ee16bdf310a4b238 512 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 Gene3D G3DSA:3.40.630.10 26 389 1.8E-108 T 13-10-2018 trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 25 390 1.2E-83 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 Pfam PF01546 Peptidase family M20/M25/M40 86 397 2.9E-40 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 SUPERFAMILY SSF53187 17 400 1.97E-69 T 13-10-2018 trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 SUPERFAMILY SSF55031 195 299 2.88E-23 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 Gene3D G3DSA:3.30.70.360 194 317 1.8E-108 T 13-10-2018 trd_1071 fd8183f0a08ec4007fe7adf8f180569c 404 Pfam PF07687 Peptidase dimerisation domain 190 299 1.4E-23 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_A0666 ce4c9b3cc699bc0fe8b1318ed52c7ebe 746 SUPERFAMILY SSF48208 272 722 9.83E-85 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 trd_A0666 ce4c9b3cc699bc0fe8b1318ed52c7ebe 746 Pfam PF06202 Amylo-alpha-1,6-glucosidase 300 668 3.2E-14 T 13-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 trd_A0666 ce4c9b3cc699bc0fe8b1318ed52c7ebe 746 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 10 237 5.3E-62 T 13-10-2018 IPR032856 Putative glycogen debranching enzyme, N-terminal trd_A0666 ce4c9b3cc699bc0fe8b1318ed52c7ebe 746 Gene3D G3DSA:1.50.10.10 302 674 3.6E-57 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 trd_A0302 865b3687749461c3f757fa1613198e12 436 Pfam PF16916 Dimerisation domain of Zinc Transporter 348 420 5.3E-21 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain trd_A0302 865b3687749461c3f757fa1613198e12 436 SUPERFAMILY SSF160240 347 419 2.49E-18 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 trd_A0302 865b3687749461c3f757fa1613198e12 436 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 144 420 1.4E-66 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 trd_A0302 865b3687749461c3f757fa1613198e12 436 SUPERFAMILY SSF161111 140 341 2.48E-53 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily trd_A0302 865b3687749461c3f757fa1613198e12 436 Pfam PF01545 Cation efflux family 148 339 1.0E-40 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 trd_A0302 865b3687749461c3f757fa1613198e12 436 Gene3D G3DSA:1.20.1510.10 142 339 1.7E-53 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily trd_A0302 865b3687749461c3f757fa1613198e12 436 Gene3D G3DSA:3.30.70.1350 340 420 1.4E-20 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 trd_1338 993502c404b6f31104a340528979dc5f 273 SUPERFAMILY SSF46626 63 176 4.8E-23 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_1338 993502c404b6f31104a340528979dc5f 273 Gene3D G3DSA:1.10.760.10 56 171 6.4E-23 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_1338 993502c404b6f31104a340528979dc5f 273 Gene3D G3DSA:1.10.760.10 177 270 5.9E-12 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_1338 993502c404b6f31104a340528979dc5f 273 PRINTS PR00605 Class IC cytochrome C signature 145 167 6.3E-5 T 13-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 trd_1338 993502c404b6f31104a340528979dc5f 273 PRINTS PR00605 Class IC cytochrome C signature 95 106 6.3E-5 T 13-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 trd_1338 993502c404b6f31104a340528979dc5f 273 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 198 266 4.7E-10 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1338 993502c404b6f31104a340528979dc5f 273 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 85 167 2.6E-14 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1338 993502c404b6f31104a340528979dc5f 273 SUPERFAMILY SSF46626 176 269 2.29E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0219 ec1ff3a39e4e729c899699fd09329abd 421 SUPERFAMILY SSF52540 135 414 1.57E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0219 ec1ff3a39e4e729c899699fd09329abd 421 SMART SM00382 160 342 4.3E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0294 6cd8649372344eea56dd1b5e31fb1819 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 91 120 5.0E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 trd_A0294 6cd8649372344eea56dd1b5e31fb1819 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 204 233 5.0E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 trd_A0294 6cd8649372344eea56dd1b5e31fb1819 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 138 299 2.2E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0294 6cd8649372344eea56dd1b5e31fb1819 563 SMART SM00283 77 338 1.8E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_A0294 6cd8649372344eea56dd1b5e31fb1819 563 Gene3D G3DSA:1.10.287.950 25 359 5.8E-47 T 13-10-2018 trd_A0294 6cd8649372344eea56dd1b5e31fb1819 563 SUPERFAMILY SSF58104 43 336 8.24E-47 T 13-10-2018 trd_A0572 1b61687b8693cd782069d02911127e92 381 Gene3D G3DSA:3.20.20.140 4 380 2.6E-52 T 13-10-2018 trd_A0572 1b61687b8693cd782069d02911127e92 381 SUPERFAMILY SSF51556 143 379 8.84E-5 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 Pfam PF00557 Metallopeptidase family M24 13 240 1.4E-58 T 13-10-2018 IPR000994 Peptidase M24 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 247 1.5E-100 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 Gene3D G3DSA:3.90.230.10 1 249 1.7E-109 T 13-10-2018 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 SUPERFAMILY SSF55920 3 247 1.57E-92 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 Hamap MF_01974 Methionine aminopeptidase [map]. 3 249 42.698 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 3.4E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 3.4E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 3.4E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_A0436 033dfe99dd58d8609fdba6cddd9710a1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 3.4E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_1550 02618e14699c9527f6f0e074dddd8dac 192 Pfam PF06168 Protein of unknown function (DUF981) 1 176 1.5E-44 T 13-10-2018 IPR009324 Protein of unknown function DUF981 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 Pfam PF00361 Proton-conducting membrane transporter 131 419 1.4E-81 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 36 122 7.0E-5 T 13-10-2018 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 137 156 2.1E-45 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 242 266 2.1E-45 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 330 349 2.1E-45 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 382 408 2.1E-45 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 2.1E-45 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1788 9691d46de05c72e32fdfcc4089df5d2d 524 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 520 4.3E-188 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 Gene3D G3DSA:2.40.10.120 63 267 1.7E-40 T 13-10-2018 trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 Pfam PF13365 Trypsin-like peptidase domain 99 236 8.7E-29 T 13-10-2018 trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 SUPERFAMILY SSF50494 76 264 4.33E-39 T 13-10-2018 IPR009003 Peptidase S1, PA clan trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 PRINTS PR00834 HtrA/DegQ protease family signature 229 246 1.3E-11 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 PRINTS PR00834 HtrA/DegQ protease family signature 111 123 1.3E-11 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 1.3E-11 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0117 c64b545ffc7d4449ff9faf183fa61c7e 268 PRINTS PR00834 HtrA/DegQ protease family signature 132 152 1.3E-11 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0739 33cdc7e866e1b52b3fee6b80ac5e6f4b 214 Pfam PF00578 AhpC/TSA family 73 189 2.4E-29 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 trd_A0739 33cdc7e866e1b52b3fee6b80ac5e6f4b 214 ProSitePatterns PS00194 Thioredoxin family active site. 101 119 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 trd_A0739 33cdc7e866e1b52b3fee6b80ac5e6f4b 214 SUPERFAMILY SSF52833 69 207 1.05E-46 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_A0739 33cdc7e866e1b52b3fee6b80ac5e6f4b 214 Gene3D G3DSA:3.40.30.10 65 208 3.1E-47 T 13-10-2018 trd_A0334 2a2d491433aa3e585d7102b78bd2d330 238 Gene3D G3DSA:3.90.226.10 2 236 1.7E-47 T 13-10-2018 trd_A0334 2a2d491433aa3e585d7102b78bd2d330 238 SUPERFAMILY SSF52096 5 235 1.44E-48 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0334 2a2d491433aa3e585d7102b78bd2d330 238 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 220 5.6E-33 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_1342 00ccbdb92e682bbb7bcf43976fedfad3 353 SUPERFAMILY SSF53659 2 351 1.59E-119 T 13-10-2018 trd_1342 00ccbdb92e682bbb7bcf43976fedfad3 353 SMART SM01329 5 347 2.5E-179 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 trd_1342 00ccbdb92e682bbb7bcf43976fedfad3 353 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 346 2.4E-93 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 trd_1342 00ccbdb92e682bbb7bcf43976fedfad3 353 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 1 350 8.7E-160 T 13-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 trd_1342 00ccbdb92e682bbb7bcf43976fedfad3 353 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 240 259 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 trd_1342 00ccbdb92e682bbb7bcf43976fedfad3 353 Gene3D G3DSA:3.40.718.10 1 353 1.6E-134 T 13-10-2018 trd_1503 15356b60ae8c60776b950aac75dbc9a4 318 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1503 15356b60ae8c60776b950aac75dbc9a4 318 SMART SM00382 38 242 8.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1503 15356b60ae8c60776b950aac75dbc9a4 318 Gene3D G3DSA:3.40.50.300 6 237 7.4E-65 T 13-10-2018 trd_1503 15356b60ae8c60776b950aac75dbc9a4 318 Pfam PF00005 ABC transporter 29 171 1.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1503 15356b60ae8c60776b950aac75dbc9a4 318 SUPERFAMILY SSF52540 12 232 3.15E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 PIRSF PIRSF004803 1 553 3.5E-195 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 SMART SM00849 18 218 1.9E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Hamap MF_01491 Ribonuclease J [rnj]. 1 553 38.636 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 368 396 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Gene3D G3DSA:3.60.15.10 7 442 5.8E-167 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 7 550 2.2E-160 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Gene3D G3DSA:3.40.50.10710 210 360 5.8E-167 T 13-10-2018 trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 366 419 7.6E-10 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Gene3D G3DSA:3.10.20.580 452 553 4.8E-11 T 13-10-2018 trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Pfam PF00753 Metallo-beta-lactamase superfamily 18 222 3.9E-12 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1795 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 SUPERFAMILY SSF56281 6 427 1.27E-89 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1628 b2c6d2fa4b1ff63d441d8431350b7d8f 574 SUPERFAMILY SSF53850 73 556 1.85E-127 T 13-10-2018 trd_1628 b2c6d2fa4b1ff63d441d8431350b7d8f 574 PIRSF PIRSF002741 36 568 9.7E-110 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1628 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 115 482 1.5E-85 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1628 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Gene3D G3DSA:3.40.190.10 81 549 2.4E-140 T 13-10-2018 trd_1628 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Gene3D G3DSA:3.90.76.10 103 223 2.4E-140 T 13-10-2018 trd_1628 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Gene3D G3DSA:3.10.105.10 316 538 2.4E-140 T 13-10-2018 trd_0701 d1bc908c68e4c169f8828a4beb27aa62 340 SMART SM00382 42 183 0.0013 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0701 d1bc908c68e4c169f8828a4beb27aa62 340 Gene3D G3DSA:1.10.8.300 206 314 3.5E-36 T 13-10-2018 trd_0701 d1bc908c68e4c169f8828a4beb27aa62 340 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 45 175 2.5E-64 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 trd_0701 d1bc908c68e4c169f8828a4beb27aa62 340 PIRSF PIRSF002849 2 319 7.5E-137 T 13-10-2018 trd_0701 d1bc908c68e4c169f8828a4beb27aa62 340 SUPERFAMILY SSF52540 9 289 1.09E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0701 d1bc908c68e4c169f8828a4beb27aa62 340 Gene3D G3DSA:3.40.50.300 26 192 3.8E-47 T 13-10-2018 trd_A0835 a25342a01374d26840707e05265237c7 110 Gene3D G3DSA:3.40.250.10 14 110 1.5E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_A0835 a25342a01374d26840707e05265237c7 110 Pfam PF00581 Rhodanese-like domain 14 103 6.8E-20 T 13-10-2018 IPR001763 Rhodanese-like domain trd_A0835 a25342a01374d26840707e05265237c7 110 SUPERFAMILY SSF52821 8 110 3.8E-39 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily trd_A0835 a25342a01374d26840707e05265237c7 110 SMART SM00450 13 107 5.4E-29 T 13-10-2018 IPR001763 Rhodanese-like domain trd_A0110 acdbd86abac6388c6eda23f23e0ea4ab 443 Pfam PF09670 CRISPR-associated protein (Cas_Cas02710) 25 403 2.1E-52 T 13-10-2018 trd_A0110 acdbd86abac6388c6eda23f23e0ea4ab 443 TIGRFAM TIGR02710 TIGR02710: CRISPR-associated protein, TIGR02710 family 24 414 8.9E-168 T 13-10-2018 IPR014082 CRISPR-associated protein, Cas02710 trd_0705 a1a2d2bb981404163607bb281e3723d6 686 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 11 681 1.2E-249 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 trd_0705 a1a2d2bb981404163607bb281e3723d6 686 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 3 684 25.372 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 trd_0705 a1a2d2bb981404163607bb281e3723d6 686 PIRSF PIRSF001265 1 684 2.1E-256 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 trd_0705 a1a2d2bb981404163607bb281e3723d6 686 Pfam PF03030 Inorganic H+ pyrophosphatase 14 679 2.1E-263 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 SMART SM00400 32 86 2.2E-32 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Hamap MF_00974 DNA primase [dnaG]. 1 588 26.597 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Gene3D G3DSA:3.90.580.10 1 95 3.6E-39 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 SUPERFAMILY SSF57783 3 97 1.87E-35 T 13-10-2018 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 SMART SM00493 254 325 5.4E-15 T 13-10-2018 IPR006171 TOPRIM domain trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Gene3D G3DSA:3.40.1360.10 236 379 6.7E-37 T 13-10-2018 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 SUPERFAMILY SSF56731 110 436 2.49E-90 T 13-10-2018 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Gene3D G3DSA:3.90.980.10 103 235 2.2E-42 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 TIGRFAM TIGR01391 dnaG: DNA primase 5 430 1.8E-125 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Pfam PF13662 Toprim domain 255 320 5.5E-14 T 13-10-2018 IPR006171 TOPRIM domain trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 PIRSF PIRSF002811 1 597 3.1E-153 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Pfam PF01807 CHC2 zinc finger 4 94 5.8E-37 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 trd_0421 c5e0cb1f203204506525b4fc81a95dce 616 Pfam PF08275 DNA primase catalytic core, N-terminal domain 129 246 3.1E-37 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal trd_A0248 de630d7681fb59d1b4f0fb8140d3be71 367 Gene3D G3DSA:2.40.110.10 137 226 7.9E-6 T 13-10-2018 trd_A0248 de630d7681fb59d1b4f0fb8140d3be71 367 SUPERFAMILY SSF56645 14 221 1.06E-13 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_A0248 de630d7681fb59d1b4f0fb8140d3be71 367 SUPERFAMILY SSF47203 229 361 1.12E-6 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 SMART SM00825 Beta-ketoacyl synthase 4 412 4.0E-15 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 PIRSF PIRSF000447 1 412 6.2E-159 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 243 5.7E-52 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 SUPERFAMILY SSF53901 1 250 3.92E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 SUPERFAMILY SSF53901 213 411 1.33E-73 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 Gene3D G3DSA:3.40.47.10 255 399 6.3E-54 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 367 2.2E-35 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 Gene3D G3DSA:3.40.47.10 1 253 2.7E-84 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_0797 0b37a5deb227a054a7bfa45f32e44679 433 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 407 5.1E-172 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 trd_1057 8e40fff2d0400960693825b8f00748fe 438 Gene3D G3DSA:2.30.42.10 208 289 3.2E-16 T 13-10-2018 trd_1057 8e40fff2d0400960693825b8f00748fe 438 Gene3D G3DSA:2.30.42.10 120 201 2.0E-20 T 13-10-2018 trd_1057 8e40fff2d0400960693825b8f00748fe 438 SUPERFAMILY SSF50156 93 184 1.05E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_1057 8e40fff2d0400960693825b8f00748fe 438 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 431 6.6E-77 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 trd_1057 8e40fff2d0400960693825b8f00748fe 438 Pfam PF13180 PDZ domain 119 183 4.3E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_1057 8e40fff2d0400960693825b8f00748fe 438 Pfam PF13180 PDZ domain 203 273 8.6E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_1057 8e40fff2d0400960693825b8f00748fe 438 SMART SM00228 108 176 8.1E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_1057 8e40fff2d0400960693825b8f00748fe 438 SMART SM00228 194 264 8.8E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_1057 8e40fff2d0400960693825b8f00748fe 438 SUPERFAMILY SSF50156 208 292 3.94E-15 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_1057 8e40fff2d0400960693825b8f00748fe 438 Pfam PF02163 Peptidase family M50 7 418 8.7E-61 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 trd_0321 65bf58437fef7e03605462084d3ec38d 68 SUPERFAMILY SSF55331 11 52 2.29E-6 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily trd_0321 65bf58437fef7e03605462084d3ec38d 68 Gene3D G3DSA:3.30.429.10 2 68 2.1E-25 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily trd_A0036 2902404fca1562b53edfc543ebd6db5f 260 Pfam PF01311 Bacterial export proteins, family 1 13 243 1.5E-58 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 trd_A0036 2902404fca1562b53edfc543ebd6db5f 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 247 2.7E-50 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 trd_A0036 2902404fca1562b53edfc543ebd6db5f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 5.5E-22 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 trd_A0036 2902404fca1562b53edfc543ebd6db5f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 5.5E-22 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 trd_A0036 2902404fca1562b53edfc543ebd6db5f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 5.5E-22 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 trd_A0036 2902404fca1562b53edfc543ebd6db5f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 5.5E-22 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 trd_0180 e862a135a69cbb6478c6b7764888b618 214 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 200 34.828 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 trd_0180 e862a135a69cbb6478c6b7764888b618 214 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 199 5.4E-66 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 trd_0180 e862a135a69cbb6478c6b7764888b618 214 SUPERFAMILY SSF52317 2 203 5.0E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0180 e862a135a69cbb6478c6b7764888b618 214 Gene3D G3DSA:3.40.50.880 1 206 3.2E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0180 e862a135a69cbb6478c6b7764888b618 214 PIRSF PIRSF000495 1 203 2.0E-66 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 trd_0180 e862a135a69cbb6478c6b7764888b618 214 Pfam PF00117 Glutamine amidotransferase class-I 4 197 1.4E-21 T 13-10-2018 IPR017926 Glutamine amidotransferase trd_1152 873a0f973d2d886d2cdc5283448422d3 485 Pfam PF00174 Oxidoreductase molybdopterin binding domain 211 358 6.4E-39 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 trd_1152 873a0f973d2d886d2cdc5283448422d3 485 Gene3D G3DSA:3.90.420.10 175 373 2.5E-52 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 trd_1152 873a0f973d2d886d2cdc5283448422d3 485 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 370 479 2.7E-9 T 13-10-2018 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 trd_1152 873a0f973d2d886d2cdc5283448422d3 485 Gene3D G3DSA:2.60.40.650 374 483 9.7E-28 T 13-10-2018 trd_1152 873a0f973d2d886d2cdc5283448422d3 485 SUPERFAMILY SSF81296 370 481 1.05E-27 T 13-10-2018 IPR014756 Immunoglobulin E-set trd_1152 873a0f973d2d886d2cdc5283448422d3 485 SUPERFAMILY SSF56524 193 399 1.05E-54 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 trd_A0212 98eda15706ccd2a399444c441d61f97f 170 Gene3D G3DSA:3.40.1550.10 14 155 1.1E-12 T 13-10-2018 IPR028976 CheC-like superfamily trd_A0212 98eda15706ccd2a399444c441d61f97f 170 SUPERFAMILY SSF103039 14 138 2.35E-14 T 13-10-2018 IPR028976 CheC-like superfamily trd_A0212 98eda15706ccd2a399444c441d61f97f 170 Pfam PF13690 Chemotaxis phosphatase CheX 57 135 6.8E-11 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 1.8E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.8E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.8E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.8E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.8E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 7.5E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 7.5E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 7.5E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0297 5b063faaee235d37839121e7d80281ee 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_0297 5b063faaee235d37839121e7d80281ee 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 244 5.6E-51 T 13-10-2018 trd_0297 5b063faaee235d37839121e7d80281ee 271 SUPERFAMILY SSF51735 7 246 1.17E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0297 5b063faaee235d37839121e7d80281ee 271 Gene3D G3DSA:3.40.50.720 1 249 3.9E-63 T 13-10-2018 trd_0386 d67d91fb07ce1572ec4145d8203e6c0d 228 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 3 227 36.908 T 13-10-2018 IPR022877 Protein of unknown funcion UPF0173 trd_0386 d67d91fb07ce1572ec4145d8203e6c0d 228 SMART SM00849 9 190 2.6E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0386 d67d91fb07ce1572ec4145d8203e6c0d 228 SUPERFAMILY SSF56281 3 212 7.73E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0386 d67d91fb07ce1572ec4145d8203e6c0d 228 Pfam PF13483 Beta-lactamase superfamily domain 5 190 6.2E-23 T 13-10-2018 trd_0386 d67d91fb07ce1572ec4145d8203e6c0d 228 Gene3D G3DSA:3.60.15.10 2 227 9.5E-71 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0783 2541d8c3a53a52ec1a091e4e8d30bcc7 62 Pfam PF02416 mttA/Hcf106 family 10 54 7.5E-18 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 trd_0783 2541d8c3a53a52ec1a091e4e8d30bcc7 62 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 6 26 6.6E-5 T 13-10-2018 trd_0783 2541d8c3a53a52ec1a091e4e8d30bcc7 62 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 26 45 6.6E-5 T 13-10-2018 trd_0783 2541d8c3a53a52ec1a091e4e8d30bcc7 62 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 8 54 2.2E-19 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 trd_0783 2541d8c3a53a52ec1a091e4e8d30bcc7 62 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 6 54 16.973 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 Pfam PF13492 GAF domain 692 815 2.2E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 SUPERFAMILY SSF55781 321 490 5.02E-22 T 13-10-2018 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 Gene3D G3DSA:3.30.450.40 4 162 1.1E-19 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 Pfam PF13185 GAF domain 375 489 4.4E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 Pfam PF13185 GAF domain 7 152 1.4E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 SUPERFAMILY SSF55781 684 815 7.41E-17 T 13-10-2018 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 Gene3D G3DSA:3.30.450.40 326 499 7.2E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 Gene3D G3DSA:3.30.450.40 664 815 1.2E-15 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 SMART SM00065 8 165 7.6E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 SMART SM00065 684 815 0.14 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 SMART SM00065 353 500 1.9E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1090 a75a47c92fd945e330923b858ed3d2cc 815 SUPERFAMILY SSF55781 9 151 2.75E-13 T 13-10-2018 trd_0311 74fb8480b26b88b56ae4438a291d2064 241 Pfam PF03737 Aldolase/RraA 48 198 5.2E-24 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein trd_0311 74fb8480b26b88b56ae4438a291d2064 241 Gene3D G3DSA:3.50.30.100 5 222 7.8E-39 T 13-10-2018 trd_0311 74fb8480b26b88b56ae4438a291d2064 241 SUPERFAMILY SSF89562 44 205 2.35E-27 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Gene3D G3DSA:1.10.10.1600 426 503 1.2E-29 T 13-10-2018 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF01336 OB-fold nucleic acid binding domain 996 1064 7.6E-8 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 SMART SM00481 6 73 5.6E-26 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 SUPERFAMILY SSF89550 6 264 1.18E-36 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF14579 Helix-hairpin-helix motif 797 889 2.7E-25 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1027 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 294 719 1.1E-164 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Gene3D G3DSA:3.20.20.140 1 273 2.4E-107 T 13-10-2018 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Gene3D G3DSA:2.40.50.140 961 1065 2.3E-5 T 13-10-2018 trd_0738 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF02811 PHP domain 7 175 2.0E-48 T 13-10-2018 IPR004013 PHP domain GO:0003824 trd_0156 ae91b671fab53f0145981b6e6adf3bdf 87 Pfam PF13192 Thioredoxin domain 4 78 4.3E-8 T 13-10-2018 IPR012336 Thioredoxin-like fold trd_0156 ae91b671fab53f0145981b6e6adf3bdf 87 SUPERFAMILY SSF52833 4 81 6.21E-11 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0156 ae91b671fab53f0145981b6e6adf3bdf 87 Gene3D G3DSA:3.40.30.10 1 80 6.2E-13 T 13-10-2018 trd_0570 95e56a0e564399613a09abc2fc96a294 575 SUPERFAMILY SSF101898 126 355 5.75E-6 T 13-10-2018 trd_A0054 b6776989ad70807c6dda495b5b56045f 162 SUPERFAMILY SSF55811 5 124 8.39E-31 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_A0054 b6776989ad70807c6dda495b5b56045f 162 PRINTS PR00502 NUDIX hydrolase family signature 35 49 2.2E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 trd_A0054 b6776989ad70807c6dda495b5b56045f 162 PRINTS PR00502 NUDIX hydrolase family signature 49 64 2.2E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 trd_A0054 b6776989ad70807c6dda495b5b56045f 162 Pfam PF00293 NUDIX domain 8 117 1.0E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_A0054 b6776989ad70807c6dda495b5b56045f 162 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 trd_A0054 b6776989ad70807c6dda495b5b56045f 162 Gene3D G3DSA:3.90.79.10 1 131 2.1E-31 T 13-10-2018 trd_0532 c56db13333674f05a8f20a8f16a5ac45 129 Gene3D G3DSA:2.10.150.10 6 129 1.7E-34 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0532 c56db13333674f05a8f20a8f16a5ac45 129 Pfam PF00699 Urease beta subunit 8 104 3.0E-29 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_0532 c56db13333674f05a8f20a8f16a5ac45 129 SUPERFAMILY SSF51278 7 128 1.31E-36 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 trd_1448 44330e05c7ecf6a0853e4c4f73b13b14 418 Pfam PF07690 Major Facilitator Superfamily 21 311 1.5E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1448 44330e05c7ecf6a0853e4c4f73b13b14 418 Gene3D G3DSA:1.20.1250.20 13 400 6.3E-40 T 13-10-2018 trd_1448 44330e05c7ecf6a0853e4c4f73b13b14 418 SUPERFAMILY SSF103473 12 401 3.66E-48 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 883 6.5E-212 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 Gene3D G3DSA:1.10.150.870 784 872 2.7E-7 T 13-10-2018 trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 304 722 2.3E-129 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 Pfam PF02811 PHP domain 7 183 1.0E-33 T 13-10-2018 IPR004013 PHP domain GO:0003824 trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 Pfam PF14579 Helix-hairpin-helix motif 795 882 7.9E-25 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 SUPERFAMILY SSF89550 6 239 8.63E-26 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 SMART SM00481 6 73 2.9E-23 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal trd_A0525 e988113eb67e992fd5c278b094b08ddf 1059 Gene3D G3DSA:3.20.20.140 2 280 2.8E-84 T 13-10-2018 trd_0374 ed2f3823f0382fc140184d24a8ea3b85 212 Pfam PF01522 Polysaccharide deacetylase 13 143 4.0E-23 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 trd_0374 ed2f3823f0382fc140184d24a8ea3b85 212 SUPERFAMILY SSF88713 7 209 2.0E-51 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_0374 ed2f3823f0382fc140184d24a8ea3b85 212 Gene3D G3DSA:3.20.20.370 1 211 5.5E-58 T 13-10-2018 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 SMART SM00228 275 368 1.7E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 Pfam PF13180 PDZ domain 276 377 2.0E-20 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 Pfam PF13365 Trypsin-like peptidase domain 98 236 7.0E-36 T 13-10-2018 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 PRINTS PR00834 HtrA/DegQ protease family signature 128 148 2.2E-40 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 PRINTS PR00834 HtrA/DegQ protease family signature 107 119 2.2E-40 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 2.2E-40 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 PRINTS PR00834 HtrA/DegQ protease family signature 170 194 2.2E-40 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 PRINTS PR00834 HtrA/DegQ protease family signature 326 338 2.2E-40 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 PRINTS PR00834 HtrA/DegQ protease family signature 229 246 2.2E-40 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 SUPERFAMILY SSF50156 275 381 3.15E-24 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 Gene3D G3DSA:2.40.10.120 59 271 5.0E-68 T 13-10-2018 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 Gene3D G3DSA:2.30.42.10 274 384 2.1E-32 T 13-10-2018 trd_A0606 e4b8bf435f10d0ea4943246b88b8726a 385 SUPERFAMILY SSF50494 71 267 1.15E-59 T 13-10-2018 IPR009003 Peptidase S1, PA clan trd_0390 1eaed877585429b5fca518d7939caa86 279 Gene3D G3DSA:3.20.20.370 1 276 2.2E-65 T 13-10-2018 trd_0390 1eaed877585429b5fca518d7939caa86 279 Pfam PF01522 Polysaccharide deacetylase 54 153 1.8E-21 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 trd_0390 1eaed877585429b5fca518d7939caa86 279 SUPERFAMILY SSF88713 2 265 4.65E-56 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_1623 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 238 326 4.9E-35 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 trd_1623 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Gene3D G3DSA:3.40.47.10 2 333 2.3E-130 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_1623 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 326 69.32 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 trd_1623 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 186 1.1E-28 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 trd_1623 1fabdf41c0b8fcff563e4acdde8d4d4a 335 SUPERFAMILY SSF53901 6 326 1.14E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 trd_1623 1fabdf41c0b8fcff563e4acdde8d4d4a 335 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 326 1.8E-122 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 trd_A0460 c31016e33537977204f9d511c87fec1e 329 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 36 325 6.1E-110 T 13-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 trd_A0460 c31016e33537977204f9d511c87fec1e 329 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 36 195 9.0E-57 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 trd_A0460 c31016e33537977204f9d511c87fec1e 329 SUPERFAMILY SSF48179 197 323 1.05E-36 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0460 c31016e33537977204f9d511c87fec1e 329 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 198 316 2.3E-36 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 trd_A0460 c31016e33537977204f9d511c87fec1e 329 PIRSF PIRSF000103 30 327 7.7E-85 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 trd_A0460 c31016e33537977204f9d511c87fec1e 329 SUPERFAMILY SSF51735 36 195 5.26E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0460 c31016e33537977204f9d511c87fec1e 329 Gene3D G3DSA:1.10.1040.10 196 324 1.0E-37 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 trd_A0460 c31016e33537977204f9d511c87fec1e 329 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 39 52 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 trd_A0460 c31016e33537977204f9d511c87fec1e 329 Gene3D G3DSA:3.40.50.720 30 195 1.7E-62 T 13-10-2018 trd_1434 5eefdc75a8017da8324052c82966b440 158 Pfam PF00011 Hsp20/alpha crystallin family 48 148 8.6E-18 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain trd_1434 5eefdc75a8017da8324052c82966b440 158 SUPERFAMILY SSF49764 12 148 2.09E-32 T 13-10-2018 IPR008978 HSP20-like chaperone trd_1434 5eefdc75a8017da8324052c82966b440 158 Gene3D G3DSA:2.60.40.790 1 148 2.0E-34 T 13-10-2018 IPR008978 HSP20-like chaperone trd_0164 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Gene3D G3DSA:3.90.1150.10 334 465 9.5E-47 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0164 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Gene3D G3DSA:3.40.640.10 79 311 2.2E-59 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0164 6ee4064c1c122bad7eff9fcd7a98a7c1 488 SUPERFAMILY SSF53383 28 480 3.58E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0164 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 5 480 57.295 T 13-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 trd_0164 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Pfam PF02347 Glycine cleavage system P-protein 42 297 3.5E-10 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 trd_0604 1da4cc104190b8f7515f038cab24efee 532 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 17 524 4.2E-125 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 trd_0604 1da4cc104190b8f7515f038cab24efee 532 Gene3D G3DSA:3.60.20.40 352 532 3.2E-63 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 348 366 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 401 416 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 128 147 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 226 242 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 39 64 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 110 128 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 255 274 3.3E-37 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 Gene3D G3DSA:1.10.246.130 242 351 2.0E-36 T 13-10-2018 trd_0604 1da4cc104190b8f7515f038cab24efee 532 SUPERFAMILY SSF56235 5 532 1.76E-176 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_0604 1da4cc104190b8f7515f038cab24efee 532 Pfam PF01019 Gamma-glutamyltranspeptidase 32 527 3.3E-154 T 13-10-2018 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 SUPERFAMILY SSF56059 90 278 6.01E-45 T 13-10-2018 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 7 277 2.3E-84 T 13-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 Gene3D G3DSA:3.40.50.20 2 103 1.0E-28 T 13-10-2018 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 Gene3D G3DSA:3.30.470.80 174 283 5.0E-35 T 13-10-2018 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 Pfam PF08443 RimK-like ATP-grasp domain 88 276 7.2E-21 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 TIGRFAM TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX 7 282 3.6E-102 T 13-10-2018 IPR011870 Lysine biosynthesis enzyme LysX GO:0003824|GO:0005524|GO:0009085 trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 SUPERFAMILY SSF52440 5 89 1.29E-17 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_A0165 5b8cdf25843e6a0f8f8eaef4ca90f127 293 Gene3D G3DSA:3.30.1490.20 105 173 1.8E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_1225 f976ba49fbdb600fb67a04dce947c4c0 202 ProSitePatterns PS00194 Thioredoxin family active site. 86 104 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 trd_1225 f976ba49fbdb600fb67a04dce947c4c0 202 Gene3D G3DSA:3.40.30.10 55 193 5.0E-43 T 13-10-2018 trd_1225 f976ba49fbdb600fb67a04dce947c4c0 202 Pfam PF00578 AhpC/TSA family 59 173 4.6E-24 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 trd_1225 f976ba49fbdb600fb67a04dce947c4c0 202 SUPERFAMILY SSF52833 17 192 1.89E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 SUPERFAMILY SSF88659 267 367 3.92E-30 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.10.10 286 369 3.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 132 357 1.4E-39 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 2 369 27.99 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.601.10 106 208 6.0E-53 T 13-10-2018 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.601.10 69 105 2.8E-7 T 13-10-2018 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF00140 Sigma-70 factor, region 1.2 71 101 1.0E-11 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 132 368 8.0E-109 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.10.10 209 285 3.6E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF04539 Sigma-70 region 3 215 288 5.4E-25 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 329 355 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF04545 Sigma-70, region 4 304 357 4.0E-19 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 329 344 7.1E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 160 173 7.1E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 308 320 7.1E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 184 192 7.1E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 344 355 7.1E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF04542 Sigma-70 region 2 136 206 5.9E-23 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 SUPERFAMILY SSF88946 68 206 7.85E-54 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_0799 d308fa9d1e86f97624e28aedc4a5b551 369 SUPERFAMILY SSF88659 209 283 7.1E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_0068 6dca54b4757bb088994128dff09338e5 371 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 323 2.3E-123 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 trd_0068 6dca54b4757bb088994128dff09338e5 371 Gene3D G3DSA:3.40.50.1440 14 321 5.9E-115 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 13 345 37.306 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 trd_0068 6dca54b4757bb088994128dff09338e5 371 ProSitePatterns PS01135 FtsZ protein signature 2. 101 122 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 trd_0068 6dca54b4757bb088994128dff09338e5 371 Pfam PF12327 FtsZ family, C-terminal domain 226 320 1.1E-25 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal trd_0068 6dca54b4757bb088994128dff09338e5 371 SMART SM00864 17 209 4.6E-110 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 SUPERFAMILY SSF52490 16 212 2.22E-68 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 SUPERFAMILY SSF55307 208 321 5.04E-37 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 SMART SM00865 211 329 4.1E-39 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 ProSitePatterns PS01134 FtsZ protein signature 1. 48 82 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 trd_0068 6dca54b4757bb088994128dff09338e5 371 PRINTS PR00423 Cell division protein FtsZ signature 130 151 1.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 PRINTS PR00423 Cell division protein FtsZ signature 216 237 1.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 PRINTS PR00423 Cell division protein FtsZ signature 102 122 1.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 PRINTS PR00423 Cell division protein FtsZ signature 193 215 1.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 trd_0068 6dca54b4757bb088994128dff09338e5 371 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 17 177 2.2E-41 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 Gene3D G3DSA:3.90.650.10 146 336 7.2E-33 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 SUPERFAMILY SSF55326 28 141 1.92E-24 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 PIRSF PIRSF005644 6 337 1.2E-67 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 SUPERFAMILY SSF56042 149 319 7.18E-27 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 Gene3D G3DSA:3.30.1330.10 7 143 3.5E-30 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 Pfam PF00586 AIR synthase related protein, N-terminal domain 38 141 4.4E-18 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_0606 769669c4049da7c1d6fc09cb4e7c6388 343 Pfam PF02769 AIR synthase related protein, C-terminal domain 154 314 6.3E-14 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_1089 4e06161879d4aa2c162bf40530c2e100 385 Pfam PF00144 Beta-lactamase 46 363 8.6E-65 T 13-10-2018 IPR001466 Beta-lactamase-related trd_1089 4e06161879d4aa2c162bf40530c2e100 385 SUPERFAMILY SSF56601 38 369 4.19E-77 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_1089 4e06161879d4aa2c162bf40530c2e100 385 Gene3D G3DSA:3.40.710.10 23 381 2.9E-77 T 13-10-2018 trd_1308 7b7f6bb9cdc361946a79532f15bedba6 155 Pfam PF03061 Thioesterase superfamily 50 120 2.3E-13 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 trd_1308 7b7f6bb9cdc361946a79532f15bedba6 155 Gene3D G3DSA:3.10.129.10 2 142 9.1E-42 T 13-10-2018 trd_1308 7b7f6bb9cdc361946a79532f15bedba6 155 SUPERFAMILY SSF54637 11 133 1.5E-35 T 13-10-2018 IPR029069 HotDog domain superfamily trd_1187 18da2ca4305465adf6e573a3648d81c9 177 SUPERFAMILY SSF55811 8 174 1.25E-45 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_1187 18da2ca4305465adf6e573a3648d81c9 177 Pfam PF00293 NUDIX domain 41 150 2.8E-14 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_1187 18da2ca4305465adf6e573a3648d81c9 177 ProSitePatterns PS00893 Nudix box signature. 75 96 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 trd_1187 18da2ca4305465adf6e573a3648d81c9 177 Gene3D G3DSA:3.90.79.10 3 172 6.5E-51 T 13-10-2018 trd_0400 ac4916ee8f38ae45cbfb96eb18c1268d 222 Pfam PF02581 Thiamine monophosphate synthase 15 196 1.9E-61 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0400 ac4916ee8f38ae45cbfb96eb18c1268d 222 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 12 214 29.142 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0400 ac4916ee8f38ae45cbfb96eb18c1268d 222 SUPERFAMILY SSF51391 10 213 2.75E-63 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0400 ac4916ee8f38ae45cbfb96eb18c1268d 222 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 14 209 7.3E-64 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0400 ac4916ee8f38ae45cbfb96eb18c1268d 222 Gene3D G3DSA:3.20.20.70 3 218 4.2E-70 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 PIRSF PIRSF000110 2 514 4.1E-188 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 213 512 6.5E-122 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 SUPERFAMILY SSF51735 11 214 6.5E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 26 211 2.4E-63 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 Gene3D G3DSA:3.40.50.720 21 199 1.1E-58 T 13-10-2018 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 201 207 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 22 513 2.8E-201 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 SUPERFAMILY SSF55347 206 512 3.6E-120 T 13-10-2018 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 22 513 91.534 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 Gene3D G3DSA:3.30.360.10 200 513 2.2E-129 T 13-10-2018 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 243 260 5.5E-51 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 261 277 5.5E-51 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 191 219 5.5E-51 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 167 180 5.5E-51 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_1143 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 352 378 5.5E-51 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 trd_A0459 488a14cb9ff4bbe83500b215e6c41dbe 283 Pfam PF00892 EamA-like transporter family 152 279 1.4E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0459 488a14cb9ff4bbe83500b215e6c41dbe 283 SUPERFAMILY SSF103481 41 134 7.32E-5 T 13-10-2018 trd_A0459 488a14cb9ff4bbe83500b215e6c41dbe 283 SUPERFAMILY SSF103481 186 280 4.45E-13 T 13-10-2018 trd_0635 02afd2d46248f6bea8c3b183495b466e 290 Pfam PF04909 Amidohydrolase 5 281 1.1E-34 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_0635 02afd2d46248f6bea8c3b183495b466e 290 Gene3D G3DSA:3.20.20.140 2 282 2.0E-42 T 13-10-2018 trd_0635 02afd2d46248f6bea8c3b183495b466e 290 SUPERFAMILY SSF51556 3 284 4.41E-43 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0369 e4caf78d0e122ffe2c5b458d88c28bfa 128 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 8 94 4.9E-26 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 trd_A0369 e4caf78d0e122ffe2c5b458d88c28bfa 128 Pfam PF03334 Na+/H+ antiporter subunit 8 87 2.6E-24 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 trd_0521 e5227a33aadb05af6574493c5f4a9abc 286 SUPERFAMILY SSF161098 22 280 3.55E-61 T 13-10-2018 IPR035906 MetI-like superfamily trd_0521 e5227a33aadb05af6574493c5f4a9abc 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 282 6.3E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0521 e5227a33aadb05af6574493c5f4a9abc 286 Gene3D G3DSA:1.10.3720.10 22 285 4.2E-61 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0482 69a47e3c6e930d85292e37e473c5e940 367 Gene3D G3DSA:2.60.120.10 3 230 3.6E-70 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_A0482 69a47e3c6e930d85292e37e473c5e940 367 Gene3D G3DSA:2.60.120.10 231 321 6.3E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_A0482 69a47e3c6e930d85292e37e473c5e940 367 Pfam PF01238 Phosphomannose isomerase type I 12 117 3.5E-9 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 trd_A0482 69a47e3c6e930d85292e37e473c5e940 367 SUPERFAMILY SSF51182 8 320 2.85E-75 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Pfam PF00549 CoA-ligase 151 271 2.8E-16 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PIRSF PIRSF001553 1 291 7.5E-131 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Gene3D G3DSA:3.40.50.261 124 289 8.3E-76 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 6.8E-39 T 13-10-2018 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 6.8E-39 T 13-10-2018 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 6.8E-39 T 13-10-2018 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 6.8E-39 T 13-10-2018 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.797 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Gene3D G3DSA:3.40.50.720 1 123 7.1E-50 T 13-10-2018 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Pfam PF02629 CoA binding domain 6 99 5.3E-27 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 1.9E-135 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 SUPERFAMILY SSF51735 1 122 5.07E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 SMART SM00881 4 100 1.1E-31 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site trd_1803 39f8c70e392ec15ea2d1bbf171c4cb6f 291 SUPERFAMILY SSF52210 123 286 8.77E-55 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 trd_A0437 0d5feb88c94cbbe42bb715f2a748de30 346 Pfam PF00892 EamA-like transporter family 191 323 3.1E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0437 0d5feb88c94cbbe42bb715f2a748de30 346 Pfam PF00892 EamA-like transporter family 49 177 9.9E-24 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0437 0d5feb88c94cbbe42bb715f2a748de30 346 SUPERFAMILY SSF103481 79 179 1.57E-15 T 13-10-2018 trd_A0437 0d5feb88c94cbbe42bb715f2a748de30 346 SUPERFAMILY SSF103481 226 326 4.05E-13 T 13-10-2018 trd_0261 4ace3ea03fcd0f17c4a811a58d8034bb 431 Gene3D G3DSA:3.30.465.40 13 227 1.4E-43 T 13-10-2018 trd_0261 4ace3ea03fcd0f17c4a811a58d8034bb 431 SUPERFAMILY SSF56176 27 211 5.14E-39 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_0261 4ace3ea03fcd0f17c4a811a58d8034bb 431 Pfam PF02913 FAD linked oxidases, C-terminal domain 402 426 2.6E-4 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 trd_0261 4ace3ea03fcd0f17c4a811a58d8034bb 431 Pfam PF01565 FAD binding domain 35 172 1.0E-27 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 trd_0261 4ace3ea03fcd0f17c4a811a58d8034bb 431 SUPERFAMILY SSF55103 214 429 5.89E-17 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 trd_1873 401eed998a21f32f878516749ca8b0ff 172 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 152 3.1E-35 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1873 401eed998a21f32f878516749ca8b0ff 172 SUPERFAMILY SSF53163 3 154 7.06E-35 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily trd_1873 401eed998a21f32f878516749ca8b0ff 172 Pfam PF01750 Hydrogenase maturation protease 23 151 1.7E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1873 401eed998a21f32f878516749ca8b0ff 172 Gene3D G3DSA:3.40.50.1450 3 161 3.6E-43 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily trd_1873 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 68 84 1.4E-11 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1873 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 57 67 1.4E-11 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1873 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 35 52 1.4E-11 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1873 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 16 27 1.4E-11 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1873 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 4 16 1.4E-11 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 trd_1253 4d993645e7fa7ff1c4e34ba770b593bd 320 SUPERFAMILY SSF161098 100 299 1.09E-27 T 13-10-2018 IPR035906 MetI-like superfamily trd_1253 4d993645e7fa7ff1c4e34ba770b593bd 320 Gene3D G3DSA:1.10.3720.10 96 313 9.5E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_1253 4d993645e7fa7ff1c4e34ba770b593bd 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 315 4.8E-31 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1253 4d993645e7fa7ff1c4e34ba770b593bd 320 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 30 82 2.4E-14 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain trd_A0658 8b89ebfdb0573ae331d10b9bf61c13e7 427 Pfam PF07995 Glucose / Sorbosone dehydrogenase 97 411 3.0E-96 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase trd_A0658 8b89ebfdb0573ae331d10b9bf61c13e7 427 Gene3D G3DSA:2.120.10.30 79 427 1.3E-131 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_A0658 8b89ebfdb0573ae331d10b9bf61c13e7 427 SUPERFAMILY SSF50952 82 411 4.18E-48 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 trd_0315 fcefb27bd33df258fc8886b4cf672dc1 406 Pfam PF01969 Protein of unknown function DUF111 5 379 4.0E-130 T 13-10-2018 IPR002822 Nickel insertion protein trd_0315 fcefb27bd33df258fc8886b4cf672dc1 406 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 3 379 1.2E-100 T 13-10-2018 IPR002822 Nickel insertion protein trd_0315 fcefb27bd33df258fc8886b4cf672dc1 406 Hamap MF_01074 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel insertion protein [larC]. 1 391 39.702 T 13-10-2018 IPR002822 Nickel insertion protein trd_0315 fcefb27bd33df258fc8886b4cf672dc1 406 Gene3D G3DSA:3.30.70.1380 241 330 1.3E-9 T 13-10-2018 trd_1210 41420ec20d16aa5935dd8ddacae7b29f 417 PIRSF PIRSF010256 1 398 2.4E-120 T 13-10-2018 IPR011195 Uncharacterised conserved protein UCP010256 trd_1210 41420ec20d16aa5935dd8ddacae7b29f 417 Pfam PF05762 VWA domain containing CoxE-like protein 174 388 1.2E-77 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like trd_1210 41420ec20d16aa5935dd8ddacae7b29f 417 SMART SM00327 224 400 6.4E-10 T 13-10-2018 IPR002035 von Willebrand factor, type A trd_1210 41420ec20d16aa5935dd8ddacae7b29f 417 Gene3D G3DSA:3.40.50.410 215 351 1.4E-8 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily trd_1210 41420ec20d16aa5935dd8ddacae7b29f 417 SUPERFAMILY SSF53300 223 355 4.28E-19 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily trd_A0511 960c09d3b4cb359056cc81f156e703f8 279 Gene3D G3DSA:3.60.110.10 3 276 1.8E-102 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_A0511 960c09d3b4cb359056cc81f156e703f8 279 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 152 172 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site trd_A0511 960c09d3b4cb359056cc81f156e703f8 279 Pfam PF00795 Carbon-nitrogen hydrolase 6 258 5.9E-66 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 trd_A0511 960c09d3b4cb359056cc81f156e703f8 279 SUPERFAMILY SSF56317 1 267 2.88E-91 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_A0910 a6689ea7a637846d17bd8337d146ecc5 196 SUPERFAMILY SSF49777 42 190 4.19E-49 T 13-10-2018 IPR036610 PEBP-like superfamily trd_A0910 a6689ea7a637846d17bd8337d146ecc5 196 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 60 189 2.6E-36 T 13-10-2018 IPR005247 YbhB/YbcL trd_A0910 a6689ea7a637846d17bd8337d146ecc5 196 Gene3D G3DSA:3.90.280.10 29 193 2.6E-58 T 13-10-2018 IPR036610 PEBP-like superfamily trd_A0910 a6689ea7a637846d17bd8337d146ecc5 196 Pfam PF01161 Phosphatidylethanolamine-binding protein 54 190 5.7E-36 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein trd_A0342 e579a8ee33e2e293013583040cd99f2e 342 SUPERFAMILY SSF51569 11 321 2.09E-45 T 13-10-2018 trd_A0342 e579a8ee33e2e293013583040cd99f2e 342 SMART SM01130 10 321 4.3E-32 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_A0342 e579a8ee33e2e293013583040cd99f2e 342 Gene3D G3DSA:3.20.20.70 10 321 6.3E-45 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0342 e579a8ee33e2e293013583040cd99f2e 342 PIRSF PIRSF001365 10 331 4.2E-41 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_A0342 e579a8ee33e2e293013583040cd99f2e 342 Pfam PF00701 Dihydrodipicolinate synthetase family 30 187 1.1E-17 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_1065 4d2e59745c550a5ec630e0b871c2b6e7 142 Pfam PF13456 Reverse transcriptase-like 46 135 1.9E-9 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 trd_1065 4d2e59745c550a5ec630e0b871c2b6e7 142 Gene3D G3DSA:3.30.420.10 11 135 1.4E-22 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 trd_1065 4d2e59745c550a5ec630e0b871c2b6e7 142 SUPERFAMILY SSF53098 12 134 2.4E-18 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 SUPERFAMILY SSF56003 124 776 2.62E-207 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 SMART SM01008 23 132 1.6E-47 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Gene3D G3DSA:3.30.365.10 135 359 7.8E-77 T 13-10-2018 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 TIGRFAM TIGR02416 CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit 17 772 0.0 T 13-10-2018 IPR012780 Carbon-monoxide dehydrogenase, large subunit GO:0005507|GO:0018492|GO:0030151 MetaCyc: PWY-7750 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 24 132 1.4E-33 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 154 712 4.6E-179 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Gene3D G3DSA:3.30.365.10 191 287 7.8E-77 T 13-10-2018 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 SUPERFAMILY SSF54665 5 152 8.9E-48 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Gene3D G3DSA:3.90.1170.50 1 132 6.8E-51 T 13-10-2018 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Gene3D G3DSA:3.30.365.10 376 752 9.4E-159 T 13-10-2018 trd_A0564 27c78999af8b7993e7e986c0bfcb3b4f 781 Gene3D G3DSA:3.30.365.10 462 627 9.4E-159 T 13-10-2018 trd_1866 a5de8bb1638408c9a7687727a901a542 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 171 318 3.9E-26 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_1866 a5de8bb1638408c9a7687727a901a542 346 Gene3D G3DSA:3.30.1330.10 17 162 2.6E-43 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_1866 a5de8bb1638408c9a7687727a901a542 346 Gene3D G3DSA:3.90.650.10 169 346 6.3E-51 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_1866 a5de8bb1638408c9a7687727a901a542 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 48 159 2.8E-15 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_1866 a5de8bb1638408c9a7687727a901a542 346 SUPERFAMILY SSF56042 166 342 4.49E-44 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_1866 a5de8bb1638408c9a7687727a901a542 346 SUPERFAMILY SSF55326 15 162 3.66E-29 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_1866 a5de8bb1638408c9a7687727a901a542 346 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 15 346 6.5E-120 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE trd_1866 a5de8bb1638408c9a7687727a901a542 346 PIRSF PIRSF005644 10 346 1.4E-109 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE trd_A0485 51ec39ed1ed04dba9076862f043cbf18 424 Gene3D G3DSA:1.20.1530.20 4 410 4.2E-106 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily trd_A0485 51ec39ed1ed04dba9076862f043cbf18 424 Pfam PF00999 Sodium/hydrogen exchanger family 12 401 1.3E-62 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 320 3.3E-24 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 518 1.5E-25 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 165 1.8E-34 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 Gene3D G3DSA:3.40.50.1220 183 345 3.5E-38 T 13-10-2018 trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 SUPERFAMILY SSF52518 360 534 3.3E-41 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 SUPERFAMILY SSF52518 3 169 2.91E-33 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 SUPERFAMILY SSF52467 150 334 4.56E-33 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 Gene3D G3DSA:3.40.50.970 1 178 1.4E-35 T 13-10-2018 trd_A0328 e28d4fd5e7a5b779c4d4d3697b4e2efb 548 Gene3D G3DSA:3.40.50.970 346 537 9.8E-44 T 13-10-2018 trd_A0112 e1d8ee7a57d8c410cbafe9765632f80c 140 TIGRFAM TIGR01881 cas_Cmr5: CRISPR type III-B/RAMP module-associated protein Cmr5 12 134 2.9E-14 T 13-10-2018 IPR010160 CRISPR-associated protein, Cmr5 trd_A0112 e1d8ee7a57d8c410cbafe9765632f80c 140 Pfam PF09701 CRISPR-associated protein (Cas_Cmr5) 14 131 4.1E-27 T 13-10-2018 IPR010160 CRISPR-associated protein, Cmr5 trd_A0112 e1d8ee7a57d8c410cbafe9765632f80c 140 Gene3D G3DSA:1.10.520.30 3 140 2.6E-27 T 13-10-2018 IPR023101 AF1862-like domain superfamily trd_A0112 e1d8ee7a57d8c410cbafe9765632f80c 140 SUPERFAMILY SSF158568 11 133 1.29E-30 T 13-10-2018 IPR023101 AF1862-like domain superfamily trd_0082 8ae1112390066fdf24317ca291a8233c 551 Pfam PF11941 Domain of unknown function (DUF3459) 455 541 5.0E-7 T 13-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) trd_0082 8ae1112390066fdf24317ca291a8233c 551 Gene3D G3DSA:2.60.40.1180 474 548 7.0E-6 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta trd_0082 8ae1112390066fdf24317ca291a8233c 551 Gene3D G3DSA:3.20.20.80 25 464 8.6E-183 T 13-10-2018 trd_0082 8ae1112390066fdf24317ca291a8233c 551 SMART SM00642 33 411 3.1E-144 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_0082 8ae1112390066fdf24317ca291a8233c 551 SUPERFAMILY SSF51445 24 469 2.78E-147 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_0082 8ae1112390066fdf24317ca291a8233c 551 SUPERFAMILY SSF51011 472 546 2.58E-7 T 13-10-2018 trd_0082 8ae1112390066fdf24317ca291a8233c 551 Pfam PF00128 Alpha amylase, catalytic domain 48 387 4.6E-98 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_0082 8ae1112390066fdf24317ca291a8233c 551 Gene3D G3DSA:3.90.400.10 125 195 8.6E-183 T 13-10-2018 trd_A0533 b16f75d518ab07c6633fe4c7e207ae24 524 Gene3D G3DSA:1.10.3720.10 278 520 9.3E-35 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0533 b16f75d518ab07c6633fe4c7e207ae24 524 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 256 8.3E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0533 b16f75d518ab07c6633fe4c7e207ae24 524 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 343 511 9.5E-10 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0533 b16f75d518ab07c6633fe4c7e207ae24 524 SUPERFAMILY SSF161098 278 515 1.39E-35 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0533 b16f75d518ab07c6633fe4c7e207ae24 524 Gene3D G3DSA:1.10.3720.10 6 261 1.8E-54 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0533 b16f75d518ab07c6633fe4c7e207ae24 524 SUPERFAMILY SSF161098 8 254 7.19E-44 T 13-10-2018 IPR035906 MetI-like superfamily trd_1683 9e5f8a2568cbcdc24b09e051108860b4 496 Pfam PF00682 HMGL-like 4 276 2.3E-23 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 trd_1683 9e5f8a2568cbcdc24b09e051108860b4 496 SUPERFAMILY SSF51569 3 288 5.86E-54 T 13-10-2018 trd_1683 9e5f8a2568cbcdc24b09e051108860b4 496 SUPERFAMILY SSF89000 303 453 9.42E-32 T 13-10-2018 trd_1683 9e5f8a2568cbcdc24b09e051108860b4 496 Gene3D G3DSA:3.20.20.70 2 452 1.1E-112 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1683 9e5f8a2568cbcdc24b09e051108860b4 496 Pfam PF02436 Conserved carboxylase domain 299 444 9.1E-29 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 trd_0217 0e532ccc0d7a46dcb87b0b4e728e7071 116 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 112 9.2E-39 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 trd_0217 0e532ccc0d7a46dcb87b0b4e728e7071 116 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 28.236 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 trd_0217 0e532ccc0d7a46dcb87b0b4e728e7071 116 Gene3D G3DSA:3.30.160.750 62 116 2.6E-24 T 13-10-2018 trd_0217 0e532ccc0d7a46dcb87b0b4e728e7071 116 Gene3D G3DSA:3.30.360.110 1 61 1.0E-12 T 13-10-2018 trd_0217 0e532ccc0d7a46dcb87b0b4e728e7071 116 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 4.0E-33 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 trd_0217 0e532ccc0d7a46dcb87b0b4e728e7071 116 SUPERFAMILY SSF56276 3 114 1.69E-35 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 trd_1255 58fede40d0b813a906557ac1aef89429 645 Gene3D G3DSA:3.10.105.10 377 612 3.5E-51 T 13-10-2018 trd_1255 58fede40d0b813a906557ac1aef89429 645 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 36 56 5.2E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal trd_1255 58fede40d0b813a906557ac1aef89429 645 PIRSF PIRSF002741 72 644 2.3E-83 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1255 58fede40d0b813a906557ac1aef89429 645 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 151 550 2.9E-77 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1255 58fede40d0b813a906557ac1aef89429 645 SUPERFAMILY SSF53850 106 641 3.86E-116 T 13-10-2018 trd_1255 58fede40d0b813a906557ac1aef89429 645 Gene3D G3DSA:3.40.190.10 73 355 5.0E-64 T 13-10-2018 trd_A0786 031134f072fd23c88c407f7649fb27d1 549 Gene3D G3DSA:3.30.200.20 2 99 2.2E-27 T 13-10-2018 trd_A0786 031134f072fd23c88c407f7649fb27d1 549 Gene3D G3DSA:1.10.510.10 100 285 2.2E-55 T 13-10-2018 trd_A0786 031134f072fd23c88c407f7649fb27d1 549 SUPERFAMILY SSF56112 15 366 7.69E-83 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_A0786 031134f072fd23c88c407f7649fb27d1 549 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 25 48 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 trd_A0786 031134f072fd23c88c407f7649fb27d1 549 SMART SM00220 19 278 1.9E-70 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 trd_A0786 031134f072fd23c88c407f7649fb27d1 549 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 137 149 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 trd_A0786 031134f072fd23c88c407f7649fb27d1 549 Pfam PF00069 Protein kinase domain 19 270 2.1E-53 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 SUPERFAMILY SSF52540 127 401 1.66E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 324 408 7.9E-26 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 325 388 5.2E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 Pfam PF00005 ABC transporter 117 274 5.2E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 Gene3D G3DSA:3.40.50.300 94 414 4.1E-100 T 13-10-2018 trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 ProSitePatterns PS00211 ABC transporters family signature. 246 260 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1954 129f88cfcc52f7561252a1be65e18fb0 415 SMART SM00382 125 323 8.5E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0272 3143f10f91a80051e22ddff8ae7581c0 245 SMART SM00382 41 229 4.9E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0272 3143f10f91a80051e22ddff8ae7581c0 245 Pfam PF00005 ABC transporter 32 180 2.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0272 3143f10f91a80051e22ddff8ae7581c0 245 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0272 3143f10f91a80051e22ddff8ae7581c0 245 SUPERFAMILY SSF52540 12 234 4.76E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0272 3143f10f91a80051e22ddff8ae7581c0 245 Gene3D G3DSA:3.40.50.300 10 241 1.3E-71 T 13-10-2018 trd_1245 984ece86a4bc825480fa0e7d520806ab 332 Pfam PF07853 Protein of unknown function (DUF1648) 241 287 3.3E-10 T 13-10-2018 IPR012867 Domain of unknown function DUF1648 trd_1245 984ece86a4bc825480fa0e7d520806ab 332 Pfam PF10882 Bacterial PH domain 79 173 7.6E-7 T 13-10-2018 IPR027783 Bacterial Pleckstrin homology domain-related trd_0780 652e34a00298040b46be9817a006dd76 260 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 53.829 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0780 652e34a00298040b46be9817a006dd76 260 SUPERFAMILY SSF51351 1 250 3.27E-85 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0780 652e34a00298040b46be9817a006dd76 260 Gene3D G3DSA:3.20.20.70 1 249 5.0E-97 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0780 652e34a00298040b46be9817a006dd76 260 Pfam PF00121 Triosephosphate isomerase 5 246 1.3E-84 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0780 652e34a00298040b46be9817a006dd76 260 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 239 5.0E-56 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_0780 652e34a00298040b46be9817a006dd76 260 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 Gene3D G3DSA:3.30.590.10 151 489 2.1E-130 T 13-10-2018 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 SUPERFAMILY SSF55931 148 487 8.44E-123 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 ProSitePatterns PS00180 Glutamine synthetase signature 1. 98 116 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 Pfam PF00120 Glutamine synthetase, catalytic domain 149 485 5.3E-128 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 63 142 5.3E-29 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 SMART SM01230 148 399 4.2E-133 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 53 486 3.1E-154 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 Gene3D G3DSA:3.10.20.70 50 150 5.7E-34 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 274 289 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_1557 d73dc5f5531df78d998d4030cb191ab9 489 SUPERFAMILY SSF54368 52 147 1.44E-31 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1337 1b9e1501506bf0831f49e39b05e95b1e 240 SUPERFAMILY SSF49503 42 141 7.34E-19 T 13-10-2018 IPR008972 Cupredoxin trd_1337 1b9e1501506bf0831f49e39b05e95b1e 240 Gene3D G3DSA:2.60.40.420 95 143 3.0E-10 T 13-10-2018 IPR008972 Cupredoxin trd_1337 1b9e1501506bf0831f49e39b05e95b1e 240 Gene3D G3DSA:2.60.40.420 35 94 5.5E-6 T 13-10-2018 IPR008972 Cupredoxin trd_1337 1b9e1501506bf0831f49e39b05e95b1e 240 Pfam PF13473 Cupredoxin-like domain 43 130 1.3E-8 T 13-10-2018 IPR028096 EfeO-type cupredoxin-like domain trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 SUPERFAMILY SSF56519 75 345 9.42E-33 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 Pfam PF00905 Penicillin binding protein transpeptidase domain 381 743 1.2E-71 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 SUPERFAMILY SSF56601 347 749 1.79E-88 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 Pfam PF03717 Penicillin-binding Protein dimerisation domain 80 330 1.1E-32 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 220 748 3.0E-141 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 Gene3D G3DSA:3.90.1310.10 221 342 7.8E-21 T 13-10-2018 trd_1927 4e46cf4ae5ed43a7083672cecfb786bb 758 Gene3D G3DSA:3.40.710.10 343 752 1.2E-104 T 13-10-2018 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 2.4E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Pfam PF00072 Response regulator receiver domain 4 113 4.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SMART SM00448 2 112 1.3E-47 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Gene3D G3DSA:3.40.50.2300 1 120 6.6E-40 T 13-10-2018 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SUPERFAMILY SSF52172 3 124 2.56E-43 T 13-10-2018 IPR011006 CheY-like superfamily trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SMART SM00862 153 229 2.5E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SUPERFAMILY SSF46894 129 230 2.32E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1600 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Gene3D G3DSA:1.10.10.10 131 238 2.7E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0401 8ca36e65099b6b74246ea39e7eccd6e2 208 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 3 203 21.485 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0401 8ca36e65099b6b74246ea39e7eccd6e2 208 Gene3D G3DSA:3.20.20.70 2 206 2.7E-61 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0401 8ca36e65099b6b74246ea39e7eccd6e2 208 SUPERFAMILY SSF51391 2 202 1.31E-55 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0401 8ca36e65099b6b74246ea39e7eccd6e2 208 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 5 197 2.2E-44 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0401 8ca36e65099b6b74246ea39e7eccd6e2 208 Pfam PF02581 Thiamine monophosphate synthase 6 185 5.7E-47 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0150 119e41258badbd8d94f9b3cf549e979e 433 Pfam PF02754 Cysteine-rich domain 308 393 5.1E-13 T 13-10-2018 IPR004017 Cysteine-rich domain trd_0150 119e41258badbd8d94f9b3cf549e979e 433 Pfam PF02754 Cysteine-rich domain 185 264 3.0E-7 T 13-10-2018 IPR004017 Cysteine-rich domain trd_0150 119e41258badbd8d94f9b3cf549e979e 433 Gene3D G3DSA:3.30.70.20 28 123 3.5E-7 T 13-10-2018 trd_0150 119e41258badbd8d94f9b3cf549e979e 433 Pfam PF13187 4Fe-4S dicluster domain 60 115 2.2E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0150 119e41258badbd8d94f9b3cf549e979e 433 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_0150 119e41258badbd8d94f9b3cf549e979e 433 SUPERFAMILY SSF46548 35 130 8.2E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0496 ec07b4c6179db36c5ec55caaf1efad41 392 Gene3D G3DSA:3.20.20.60 33 390 1.2E-77 T 13-10-2018 trd_0496 ec07b4c6179db36c5ec55caaf1efad41 392 Pfam PF13714 Phosphoenolpyruvate phosphomutase 45 319 2.5E-32 T 13-10-2018 trd_0496 ec07b4c6179db36c5ec55caaf1efad41 392 PIRSF PIRSF001362 35 225 8.5E-23 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 trd_0496 ec07b4c6179db36c5ec55caaf1efad41 392 PIRSF PIRSF001362 226 388 4.3E-22 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 trd_0496 ec07b4c6179db36c5ec55caaf1efad41 392 SUPERFAMILY SSF51621 32 358 4.04E-76 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_0868 c9a68bde374dd684c6080dd2ad01ffd5 397 Pfam PF09376 NurA domain 79 360 5.3E-19 T 13-10-2018 IPR018977 NurA domain trd_0868 c9a68bde374dd684c6080dd2ad01ffd5 397 SMART SM00933 76 360 4.1E-25 T 13-10-2018 IPR018977 NurA domain trd_1773 b6fe3145e854bd02fdb74bae60867b9c 379 SUPERFAMILY SSF51905 7 375 4.73E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1773 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.30.9.10 62 318 4.0E-127 T 13-10-2018 trd_1773 b6fe3145e854bd02fdb74bae60867b9c 379 Pfam PF01266 FAD dependent oxidoreductase 8 357 3.3E-58 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_1773 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.50.50.60 8 362 4.0E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1773 b6fe3145e854bd02fdb74bae60867b9c 379 SUPERFAMILY SSF54373 217 318 5.1E-22 T 13-10-2018 trd_0546 bb6e093d6089cbe171aa57a595bcae67 197 Pfam PF00692 dUTPase 74 175 8.6E-9 T 13-10-2018 IPR029054 dUTPase-like trd_0546 bb6e093d6089cbe171aa57a595bcae67 197 SUPERFAMILY SSF51283 1 186 5.1E-49 T 13-10-2018 IPR036157 dUTPase-like superfamily trd_0546 bb6e093d6089cbe171aa57a595bcae67 197 Hamap MF_00146 dCTP deaminase [dcd]. 1 185 30.699 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 trd_0546 bb6e093d6089cbe171aa57a595bcae67 197 Gene3D G3DSA:2.70.40.10 1 189 9.1E-55 T 13-10-2018 IPR036157 dUTPase-like superfamily trd_0546 bb6e093d6089cbe171aa57a595bcae67 197 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 184 2.5E-57 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 trd_1348 962629ea6960eb47ed7576f5ef98dbb6 117 Pfam PF07883 Cupin domain 34 98 1.7E-14 T 13-10-2018 IPR013096 Cupin 2, conserved barrel trd_1348 962629ea6960eb47ed7576f5ef98dbb6 117 SUPERFAMILY SSF51182 20 101 3.37E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily trd_1348 962629ea6960eb47ed7576f5ef98dbb6 117 Gene3D G3DSA:2.60.120.10 21 111 7.1E-27 T 13-10-2018 IPR014710 RmlC-like jelly roll fold trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 Gene3D G3DSA:3.20.20.80 1 451 2.2E-171 T 13-10-2018 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 Pfam PF00232 Glycosyl hydrolase family 1 4 447 2.0E-166 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 TIGRFAM TIGR03356 BGL: beta-galactosidase 6 440 6.1E-190 T 13-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 373 384 5.4E-23 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 353 361 5.4E-23 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 284 298 5.4E-23 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 394 411 5.4E-23 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 418 430 5.4E-23 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 SUPERFAMILY SSF51445 5 448 4.29E-165 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site trd_1758 4304ad170cbd10cb4d08fa92242dfe4a 452 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 353 361 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site trd_A0114 2b260c8bb6c31acb75bfdd1c80867ea2 356 Gene3D G3DSA:3.30.70.2940 1 56 1.9E-8 T 13-10-2018 trd_A0114 2b260c8bb6c31acb75bfdd1c80867ea2 356 Pfam PF09700 CRISPR-associated protein (Cas_Cmr3) 6 356 4.3E-57 T 13-10-2018 IPR019117 CRISPR-associated protein, Cmr3 trd_A0114 2b260c8bb6c31acb75bfdd1c80867ea2 356 Gene3D G3DSA:3.30.70.2950 251 356 1.3E-7 T 13-10-2018 trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 Pfam PF13344 Haloacid dehalogenase-like hydrolase 38 133 2.7E-27 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 Gene3D G3DSA:3.40.50.1000 39 275 1.8E-84 T 13-10-2018 IPR023214 HAD superfamily trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 SUPERFAMILY SSF56784 37 286 8.15E-69 T 13-10-2018 IPR036412 HAD-like superfamily trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 PIRSF PIRSF000915 134 291 1.4E-36 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 PIRSF PIRSF000915 10 144 5.7E-25 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 Gene3D G3DSA:3.40.50.1000 116 212 1.8E-84 T 13-10-2018 IPR023214 HAD superfamily trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 38 261 2.9E-47 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1070 d608d9df8f4de8ab73616066b5e0a2ab 294 Pfam PF13242 HAD-hyrolase-like 211 285 7.2E-22 T 13-10-2018 trd_0131 9b7e322160197618ea2cf1fdf0a5ef71 441 Pfam PF07005 Putative sugar-binding N-terminal domain 6 240 5.9E-45 T 13-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain trd_0131 9b7e322160197618ea2cf1fdf0a5ef71 441 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 267 431 9.1E-33 T 13-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain trd_0131 9b7e322160197618ea2cf1fdf0a5ef71 441 Gene3D G3DSA:3.40.980.20 257 439 5.8E-40 T 13-10-2018 trd_0131 9b7e322160197618ea2cf1fdf0a5ef71 441 SUPERFAMILY SSF142764 6 437 5.36E-84 T 13-10-2018 trd_0131 9b7e322160197618ea2cf1fdf0a5ef71 441 Gene3D G3DSA:3.40.50.10840 2 245 1.4E-57 T 13-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily trd_0437 f483fed54d9bff552aa40de462674388 282 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 230 3.0E-48 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 trd_0437 f483fed54d9bff552aa40de462674388 282 Gene3D G3DSA:3.30.70.1560 135 212 9.7E-54 T 13-10-2018 trd_0437 f483fed54d9bff552aa40de462674388 282 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 trd_0437 f483fed54d9bff552aa40de462674388 282 SMART SM00363 8 70 9.8E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0437 f483fed54d9bff552aa40de462674388 282 Pfam PF00849 RNA pseudouridylate synthase 69 199 7.1E-17 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_0437 f483fed54d9bff552aa40de462674388 282 Gene3D G3DSA:3.10.290.10 4 64 5.3E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 trd_0437 f483fed54d9bff552aa40de462674388 282 Gene3D G3DSA:3.30.70.580 70 234 9.7E-54 T 13-10-2018 trd_0437 f483fed54d9bff552aa40de462674388 282 SUPERFAMILY SSF55174 3 74 1.26E-14 T 13-10-2018 trd_0437 f483fed54d9bff552aa40de462674388 282 Pfam PF01479 S4 domain 8 51 1.6E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0437 f483fed54d9bff552aa40de462674388 282 SUPERFAMILY SSF55120 54 244 4.52E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 trd_A0280 15d04f2a510bc82acd1d85d24a393791 979 Gene3D G3DSA:3.40.50.150 194 281 1.5E-5 T 13-10-2018 trd_A0280 15d04f2a510bc82acd1d85d24a393791 979 Pfam PF06634 Protein of unknown function (DUF1156) 31 91 1.3E-19 T 13-10-2018 IPR009537 Domain of unknown function DUF1156 trd_A0280 15d04f2a510bc82acd1d85d24a393791 979 SUPERFAMILY SSF53335 154 266 4.11E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 PRINTS PR00059 Ribosomal protein L6 signature 72 97 9.6E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 PRINTS PR00059 Ribosomal protein L6 signature 142 163 9.6E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 PRINTS PR00059 Ribosomal protein L6 signature 100 116 9.6E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 Gene3D G3DSA:3.90.930.12 1 83 6.5E-31 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 Gene3D G3DSA:3.90.930.12 84 181 6.4E-39 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 Pfam PF00347 Ribosomal protein L6 11 83 1.4E-16 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 Pfam PF00347 Ribosomal protein L6 92 165 9.1E-17 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 37.84 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 SUPERFAMILY SSF56053 84 178 6.91E-35 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 SUPERFAMILY SSF56053 1 83 2.75E-24 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 1.3E-72 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 trd_0970 02b50c8449b3ab8ca7830f39cfa6c001 184 PIRSF PIRSF002162 1 178 4.6E-42 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_A0441 c036d9926fc7c0987c4ad9e4645c89b5 137 SUPERFAMILY SSF54427 8 130 4.19E-30 T 13-10-2018 IPR032710 NTF2-like domain superfamily trd_A0441 c036d9926fc7c0987c4ad9e4645c89b5 137 Gene3D G3DSA:3.10.450.50 6 130 1.1E-32 T 13-10-2018 trd_A0441 c036d9926fc7c0987c4ad9e4645c89b5 137 Pfam PF12680 SnoaL-like domain 14 117 3.6E-23 T 13-10-2018 IPR037401 SnoaL-like domain trd_A0917 89a0e5a1532ceb949c0ef62279f69b1a 332 SMART SM01130 9 318 6.4E-20 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_A0917 89a0e5a1532ceb949c0ef62279f69b1a 332 PIRSF PIRSF001365 6 321 2.5E-39 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_A0917 89a0e5a1532ceb949c0ef62279f69b1a 332 Gene3D G3DSA:3.20.20.70 9 315 1.5E-43 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0917 89a0e5a1532ceb949c0ef62279f69b1a 332 Pfam PF00701 Dihydrodipicolinate synthetase family 30 258 6.4E-14 T 13-10-2018 IPR002220 DapA-like GO:0016829 trd_A0917 89a0e5a1532ceb949c0ef62279f69b1a 332 SUPERFAMILY SSF51569 10 314 2.3E-41 T 13-10-2018 trd_A0425 f43b7723e713cefc840eaab62e96e1ca 535 Pfam PF01145 SPFH domain / Band 7 family 35 227 6.6E-28 T 13-10-2018 IPR001107 Band 7 domain trd_A0425 f43b7723e713cefc840eaab62e96e1ca 535 Gene3D G3DSA:3.30.479.30 84 199 9.2E-38 T 13-10-2018 trd_A0425 f43b7723e713cefc840eaab62e96e1ca 535 SUPERFAMILY SSF117892 75 217 3.01E-36 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily trd_A0425 f43b7723e713cefc840eaab62e96e1ca 535 Pfam PF15975 Flotillin 404 477 2.6E-12 T 13-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 trd_A0425 f43b7723e713cefc840eaab62e96e1ca 535 SMART SM00244 31 210 9.3E-10 T 13-10-2018 IPR001107 Band 7 domain trd_0943 3c4adc9e85d9048239c053fdac68859d 133 SUPERFAMILY SSF57716 91 125 3.28E-8 T 13-10-2018 trd_0943 3c4adc9e85d9048239c053fdac68859d 133 Gene3D G3DSA:1.20.120.910 2 131 2.1E-27 T 13-10-2018 trd_0943 3c4adc9e85d9048239c053fdac68859d 133 SUPERFAMILY SSF109635 13 90 1.44E-6 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily trd_0943 3c4adc9e85d9048239c053fdac68859d 133 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 89 124 5.4E-12 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 trd_0367 936958faad32a8db77dd082fd529e3e1 332 Gene3D G3DSA:3.30.360.10 139 299 9.7E-107 T 13-10-2018 trd_0367 936958faad32a8db77dd082fd529e3e1 332 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 6.7E-21 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 trd_0367 936958faad32a8db77dd082fd529e3e1 332 Pfam PF00742 Homoserine dehydrogenase 137 315 4.5E-58 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 trd_0367 936958faad32a8db77dd082fd529e3e1 332 Gene3D G3DSA:3.40.50.720 5 315 9.7E-107 T 13-10-2018 trd_0367 936958faad32a8db77dd082fd529e3e1 332 SUPERFAMILY SSF55347 137 302 9.15E-46 T 13-10-2018 trd_0367 936958faad32a8db77dd082fd529e3e1 332 SUPERFAMILY SSF51735 1 158 3.19E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0367 936958faad32a8db77dd082fd529e3e1 332 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 trd_0367 936958faad32a8db77dd082fd529e3e1 332 PIRSF PIRSF036497 1 323 1.6E-91 T 13-10-2018 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 trd_A0692 35e5e215a68f94e0d00e267960d15812 685 PRINTS PR00723 Subtilisin serine protease family (S8) signature 149 168 3.2E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_A0692 35e5e215a68f94e0d00e267960d15812 685 PRINTS PR00723 Subtilisin serine protease family (S8) signature 343 359 3.2E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_A0692 35e5e215a68f94e0d00e267960d15812 685 PRINTS PR00723 Subtilisin serine protease family (S8) signature 187 200 3.2E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related trd_A0692 35e5e215a68f94e0d00e267960d15812 685 Gene3D G3DSA:3.40.50.200 113 406 4.6E-78 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 trd_A0692 35e5e215a68f94e0d00e267960d15812 685 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 191 201 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site trd_A0692 35e5e215a68f94e0d00e267960d15812 685 Pfam PF00082 Subtilase family 151 386 1.7E-40 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 trd_A0692 35e5e215a68f94e0d00e267960d15812 685 SUPERFAMILY SSF52743 132 403 2.62E-72 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 trd_A0692 35e5e215a68f94e0d00e267960d15812 685 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 154 165 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site trd_A0692 35e5e215a68f94e0d00e267960d15812 685 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 344 354 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site trd_0423 77f3e06d63104e95e21ccfe64697587b 360 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 47 175 9.8E-50 T 13-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 trd_0423 77f3e06d63104e95e21ccfe64697587b 360 Pfam PF01966 HD domain 84 201 6.5E-17 T 13-10-2018 IPR006674 HD domain trd_0423 77f3e06d63104e95e21ccfe64697587b 360 SUPERFAMILY SSF109604 37 357 1.13E-79 T 13-10-2018 trd_0423 77f3e06d63104e95e21ccfe64697587b 360 Pfam PF13286 Phosphohydrolase-associated domain 262 348 5.5E-24 T 13-10-2018 IPR026875 Phosphohydrolase-associated domain trd_0423 77f3e06d63104e95e21ccfe64697587b 360 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 25 351 30.977 T 13-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 trd_0423 77f3e06d63104e95e21ccfe64697587b 360 SMART SM00471 80 212 4.9E-13 T 13-10-2018 IPR003607 HD/PDEase domain trd_0423 77f3e06d63104e95e21ccfe64697587b 360 Gene3D G3DSA:1.10.3210.10 12 351 2.4E-112 T 13-10-2018 trd_A0275 765c44476dae463c2d4a9d2516a54ee7 557 Gene3D G3DSA:3.30.1360.170 309 517 6.5E-17 T 13-10-2018 trd_A0275 765c44476dae463c2d4a9d2516a54ee7 557 SUPERFAMILY SSF69796 310 513 5.62E-21 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 trd_A0275 765c44476dae463c2d4a9d2516a54ee7 557 Pfam PF02511 Thymidylate synthase complementing protein 30 258 2.3E-44 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 trd_A0275 765c44476dae463c2d4a9d2516a54ee7 557 Pfam PF02511 Thymidylate synthase complementing protein 312 508 1.6E-30 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 trd_A0275 765c44476dae463c2d4a9d2516a54ee7 557 SUPERFAMILY SSF69796 29 263 4.45E-27 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 trd_1610 3c9ca3fa16fd43fe6c590ea04030c297 320 Pfam PF01063 Amino-transferase class IV 35 268 9.5E-42 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 trd_1610 3c9ca3fa16fd43fe6c590ea04030c297 320 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 2.3E-84 T 13-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 trd_1610 3c9ca3fa16fd43fe6c590ea04030c297 320 Gene3D G3DSA:3.30.470.10 1 132 1.1E-28 T 13-10-2018 trd_1610 3c9ca3fa16fd43fe6c590ea04030c297 320 Gene3D G3DSA:3.20.10.10 133 302 2.4E-49 T 13-10-2018 trd_1610 3c9ca3fa16fd43fe6c590ea04030c297 320 SUPERFAMILY SSF56752 7 303 5.62E-76 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 trd_1319 97dfdeacc0f5a337b42cfcce002a96d8 326 SUPERFAMILY SSF56300 17 322 7.45E-67 T 13-10-2018 trd_1319 97dfdeacc0f5a337b42cfcce002a96d8 326 Pfam PF00149 Calcineurin-like phosphoesterase 20 282 7.7E-5 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_1319 97dfdeacc0f5a337b42cfcce002a96d8 326 Gene3D G3DSA:3.60.21.10 102 321 1.3E-17 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 107 8.6E-37 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 Gene3D G3DSA:3.10.20.30 1 102 1.3E-36 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 SUPERFAMILY SSF54292 1 102 2.85E-30 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 223 1.7E-82 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 Pfam PF13237 4Fe-4S dicluster domain 138 210 2.7E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 Gene3D G3DSA:1.10.1060.10 103 230 9.1E-47 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0330 4b99789517c2c6b9b1cf38ec54cad2d7 231 SUPERFAMILY SSF46548 103 227 5.76E-33 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_A0681 cff43d21aeb71523c66f7f9648391720 282 SUPERFAMILY SSF52467 25 269 9.81E-75 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_A0681 cff43d21aeb71523c66f7f9648391720 282 Gene3D G3DSA:3.30.1600.10 54 191 6.1E-70 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily trd_A0681 cff43d21aeb71523c66f7f9648391720 282 Gene3D G3DSA:3.40.50.1220 41 263 6.1E-70 T 13-10-2018 trd_A0681 cff43d21aeb71523c66f7f9648391720 282 Pfam PF02146 Sir2 family 45 221 4.3E-41 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 trd_0189 c11f79938841fa87534d3654c4910a88 112 Gene3D G3DSA:3.30.70.120 1 103 4.5E-33 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal trd_0189 c11f79938841fa87534d3654c4910a88 112 SUPERFAMILY SSF54913 2 110 1.74E-9 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_0189 c11f79938841fa87534d3654c4910a88 112 Pfam PF06153 Cyclic-di-AMP receptor 1 108 3.8E-32 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor trd_0903 a070aac168270fe9663ecd99a6269e8f 309 PIRSF PIRSF021898 9 306 8.2E-58 T 13-10-2018 IPR016797 Uncharacterised conserved protein UCP021898 trd_0903 a070aac168270fe9663ecd99a6269e8f 309 Gene3D G3DSA:3.20.20.140 158 304 2.8E-9 T 13-10-2018 trd_0903 a070aac168270fe9663ecd99a6269e8f 309 SUPERFAMILY SSF51556 18 303 9.79E-33 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0744 015607c5106245c580b0ee25455fcbe1 421 PRINTS PR00758 Arsenical pump membrane protein signature 274 298 1.1E-30 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 trd_A0744 015607c5106245c580b0ee25455fcbe1 421 PRINTS PR00758 Arsenical pump membrane protein signature 175 198 1.1E-30 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 trd_A0744 015607c5106245c580b0ee25455fcbe1 421 PRINTS PR00758 Arsenical pump membrane protein signature 319 341 1.1E-30 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 trd_A0744 015607c5106245c580b0ee25455fcbe1 421 PRINTS PR00758 Arsenical pump membrane protein signature 360 385 1.1E-30 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 trd_A0744 015607c5106245c580b0ee25455fcbe1 421 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 1.1E-30 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 trd_A0744 015607c5106245c580b0ee25455fcbe1 421 Pfam PF02040 Arsenical pump membrane protein 8 419 3.7E-43 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 trd_1080 d55db125b8c8db563d4e9a74b1c4ec70 451 Gene3D G3DSA:3.40.640.10 69 344 9.7E-172 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1080 d55db125b8c8db563d4e9a74b1c4ec70 451 SUPERFAMILY SSF53383 14 448 3.7E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1080 d55db125b8c8db563d4e9a74b1c4ec70 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1080 d55db125b8c8db563d4e9a74b1c4ec70 451 Pfam PF00202 Aminotransferase class-III 34 446 1.5E-103 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1080 d55db125b8c8db563d4e9a74b1c4ec70 451 Gene3D G3DSA:3.90.1150.10 15 446 9.7E-172 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1080 d55db125b8c8db563d4e9a74b1c4ec70 451 PIRSF PIRSF000521 35 449 6.4E-38 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1847 61760c885d7a0764297f958072b319fa 775 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 145 2.0E-28 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_1847 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.90.1170.50 36 145 4.6E-126 T 13-10-2018 trd_1847 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 467 622 4.3E-145 T 13-10-2018 trd_1847 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 20 297 4.6E-126 T 13-10-2018 trd_1847 61760c885d7a0764297f958072b319fa 775 SUPERFAMILY SSF54665 5 168 1.7E-44 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily trd_1847 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 146 372 4.6E-126 T 13-10-2018 trd_1847 61760c885d7a0764297f958072b319fa 775 SUPERFAMILY SSF56003 137 771 6.15E-205 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 trd_1847 61760c885d7a0764297f958072b319fa 775 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 163 704 3.1E-187 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 trd_1847 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 380 747 4.3E-145 T 13-10-2018 trd_1847 61760c885d7a0764297f958072b319fa 775 SMART SM01008 21 145 6.6E-49 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead trd_A0457 fbb2b3162b3c36f0a4a23af6bd0d18a6 439 SUPERFAMILY SSF54373 275 378 3.6E-12 T 13-10-2018 trd_A0457 fbb2b3162b3c36f0a4a23af6bd0d18a6 439 Pfam PF01593 Flavin containing amine oxidoreductase 17 428 2.2E-62 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 trd_A0457 fbb2b3162b3c36f0a4a23af6bd0d18a6 439 Gene3D G3DSA:3.50.50.60 6 437 4.3E-82 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0457 fbb2b3162b3c36f0a4a23af6bd0d18a6 439 SUPERFAMILY SSF51905 9 429 2.51E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0457 fbb2b3162b3c36f0a4a23af6bd0d18a6 439 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 1.2E-5 T 13-10-2018 trd_A0457 fbb2b3162b3c36f0a4a23af6bd0d18a6 439 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 396 411 1.2E-5 T 13-10-2018 trd_1809 26a95991dedaf44ac4fad014082612ee 291 PRINTS PR01438 Universal stress protein signature 261 283 1.0E-14 T 13-10-2018 IPR006015 Universal stress protein A trd_1809 26a95991dedaf44ac4fad014082612ee 291 PRINTS PR01438 Universal stress protein signature 2 20 1.0E-14 T 13-10-2018 IPR006015 Universal stress protein A trd_1809 26a95991dedaf44ac4fad014082612ee 291 PRINTS PR01438 Universal stress protein signature 243 255 1.0E-14 T 13-10-2018 IPR006015 Universal stress protein A trd_1809 26a95991dedaf44ac4fad014082612ee 291 Gene3D G3DSA:3.40.50.620 1 126 8.5E-29 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1809 26a95991dedaf44ac4fad014082612ee 291 Gene3D G3DSA:3.40.50.620 135 283 7.5E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1809 26a95991dedaf44ac4fad014082612ee 291 SUPERFAMILY SSF52402 137 285 1.26E-36 T 13-10-2018 trd_1809 26a95991dedaf44ac4fad014082612ee 291 SUPERFAMILY SSF52402 1 125 9.07E-30 T 13-10-2018 trd_1809 26a95991dedaf44ac4fad014082612ee 291 Pfam PF00582 Universal stress protein family 137 283 1.4E-29 T 13-10-2018 IPR006016 UspA trd_1809 26a95991dedaf44ac4fad014082612ee 291 Pfam PF00582 Universal stress protein family 1 125 4.1E-20 T 13-10-2018 IPR006016 UspA trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 SUPERFAMILY SSF50249 2 63 7.42E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 SMART SM00278 108 127 0.07 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 SMART SM00278 73 92 100.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 Gene3D G3DSA:2.40.50.140 1 66 2.9E-20 T 13-10-2018 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 Pfam PF07499 RuvA, C-terminal domain 146 188 2.3E-6 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 188 6.8E-44 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 SUPERFAMILY SSF47781 65 134 2.32E-17 T 13-10-2018 IPR010994 RuvA domain 2-like trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 SUPERFAMILY SSF46929 145 189 5.89E-5 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 Pfam PF01330 RuvA N terminal domain 2 62 2.5E-15 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 Gene3D G3DSA:1.10.150.20 67 139 1.2E-20 T 13-10-2018 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 Pfam PF14520 Helix-hairpin-helix domain 72 129 1.9E-13 T 13-10-2018 trd_0636 a67d3d14320cd3b40644d37a8c423af1 191 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 189 27.098 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 trd_1353 eb33834d2eff06ed7b5e31f43a3b31e8 269 SUPERFAMILY SSF56601 1 254 2.41E-49 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_1353 eb33834d2eff06ed7b5e31f43a3b31e8 269 Pfam PF13354 Beta-lactamase enzyme family 24 228 1.5E-52 T 13-10-2018 trd_1353 eb33834d2eff06ed7b5e31f43a3b31e8 269 Gene3D G3DSA:3.40.710.10 1 266 7.9E-62 T 13-10-2018 trd_0984 6698870c11973fc9b0a010a55cf09687 214 Gene3D G3DSA:2.40.30.10 120 208 5.7E-18 T 13-10-2018 trd_0984 6698870c11973fc9b0a010a55cf09687 214 SUPERFAMILY SSF50447 2 209 3.8E-75 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_0984 6698870c11973fc9b0a010a55cf09687 214 Pfam PF00297 Ribosomal protein L3 96 180 5.0E-16 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0984 6698870c11973fc9b0a010a55cf09687 214 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 202 1.1E-82 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0984 6698870c11973fc9b0a010a55cf09687 214 Gene3D G3DSA:2.40.50.620 32 94 1.5E-12 T 13-10-2018 trd_0984 6698870c11973fc9b0a010a55cf09687 214 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 205 38.295 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_A0256 25fefffe93d8e3fb0927ad5b66cbf2c3 343 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 100 253 1.4E-36 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain trd_A0256 25fefffe93d8e3fb0927ad5b66cbf2c3 343 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 99 254 8.5E-31 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain trd_A0256 25fefffe93d8e3fb0927ad5b66cbf2c3 343 Gene3D G3DSA:1.10.260.150 73 341 9.3E-68 T 13-10-2018 trd_1955 db748c8570d05dcb162cee375df678a1 347 Pfam PF00005 ABC transporter 39 181 2.4E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1955 db748c8570d05dcb162cee375df678a1 347 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1955 db748c8570d05dcb162cee375df678a1 347 SMART SM00382 37 239 1.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1955 db748c8570d05dcb162cee375df678a1 347 SUPERFAMILY SSF52540 4 261 4.85E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1955 db748c8570d05dcb162cee375df678a1 347 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 299 1.1E-12 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1955 db748c8570d05dcb162cee375df678a1 347 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 319 3.4E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 trd_1955 db748c8570d05dcb162cee375df678a1 347 Gene3D G3DSA:3.40.50.300 2 333 7.8E-78 T 13-10-2018 trd_0729 f9e84ae68bcf2f49aaa09e1cb18e2213 161 SMART SM00732 7 105 2.3E-31 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 trd_0729 f9e84ae68bcf2f49aaa09e1cb18e2213 161 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 7 140 25.22 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 trd_0729 f9e84ae68bcf2f49aaa09e1cb18e2213 161 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 10 137 1.2E-33 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 trd_0729 f9e84ae68bcf2f49aaa09e1cb18e2213 161 Pfam PF03652 Holliday junction resolvase 8 137 4.3E-41 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 trd_0729 f9e84ae68bcf2f49aaa09e1cb18e2213 161 Gene3D G3DSA:3.30.420.140 7 150 7.8E-47 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 trd_0729 f9e84ae68bcf2f49aaa09e1cb18e2213 161 SUPERFAMILY SSF53098 7 139 6.83E-39 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily trd_0080 27c5baca9dbc757551bde81596a20e2a 672 Pfam PF13520 Amino acid permease 85 489 5.0E-29 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_0080 27c5baca9dbc757551bde81596a20e2a 672 Gene3D G3DSA:1.20.1740.10 107 530 2.2E-22 T 13-10-2018 trd_A0598 aa578ed64f647155f515db3614ab9fb2 306 PIRSF PIRSF000196 3 306 1.1E-98 T 13-10-2018 IPR008219 Proline dehydrogenase, bacteria and archaea GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 trd_A0598 aa578ed64f647155f515db3614ab9fb2 306 Pfam PF01619 Proline dehydrogenase 45 298 1.7E-31 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 trd_A0598 aa578ed64f647155f515db3614ab9fb2 306 SUPERFAMILY SSF51730 37 301 7.45E-69 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like trd_A0598 aa578ed64f647155f515db3614ab9fb2 306 Gene3D G3DSA:3.20.20.530 17 306 1.6E-92 T 13-10-2018 trd_1896 949aaab9658c37d08174810a975cab12 115 Gene3D G3DSA:3.30.428.10 2 115 2.5E-37 T 13-10-2018 IPR036265 HIT-like superfamily trd_1896 949aaab9658c37d08174810a975cab12 115 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 13-10-2018 IPR019808 Histidine triad, conserved site trd_1896 949aaab9658c37d08174810a975cab12 115 Pfam PF01230 HIT domain 14 108 3.8E-24 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_1896 949aaab9658c37d08174810a975cab12 115 SUPERFAMILY SSF54197 2 109 8.2E-35 T 13-10-2018 IPR036265 HIT-like superfamily trd_1896 949aaab9658c37d08174810a975cab12 115 PRINTS PR00332 Histidine triad family signature 27 45 1.9E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_1896 949aaab9658c37d08174810a975cab12 115 PRINTS PR00332 Histidine triad family signature 95 105 1.9E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_1896 949aaab9658c37d08174810a975cab12 115 PRINTS PR00332 Histidine triad family signature 6 22 1.9E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein trd_1744 4b432fd7bc3924f04163f3f4f4ff9925 276 Pfam PF05853 beta-keto acid cleavage enzyme 3 271 1.8E-107 T 13-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 trd_1744 4b432fd7bc3924f04163f3f4f4ff9925 276 Gene3D G3DSA:3.20.20.70 1 272 7.4E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0072 8393fdae1bebc7e1d724c2bf2e2b81df 329 Gene3D G3DSA:3.90.850.10 57 325 2.1E-82 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_A0072 8393fdae1bebc7e1d724c2bf2e2b81df 329 SUPERFAMILY SSF56529 109 325 8.37E-68 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_A0072 8393fdae1bebc7e1d724c2bf2e2b81df 329 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 108 324 2.2E-62 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 trd_A0133 bd37e816b13f7c7ffe62e895a2ed2d81 247 Pfam PF13490 Putative zinc-finger 16 49 6.5E-11 T 13-10-2018 IPR027383 Putative zinc-finger trd_A0133 bd37e816b13f7c7ffe62e895a2ed2d81 247 Gene3D G3DSA:1.10.10.1320 13 85 1.7E-12 T 13-10-2018 trd_A0133 bd37e816b13f7c7ffe62e895a2ed2d81 247 Pfam PF10099 Anti-sigma-K factor rskA 71 236 9.1E-21 T 13-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 trd_1460 a33f0c8406008b790cfb381c9d8831ed 198 Gene3D G3DSA:3.40.50.1010 4 160 5.1E-45 T 13-10-2018 trd_1460 a33f0c8406008b790cfb381c9d8831ed 198 Pfam PF01936 NYN domain 9 157 1.1E-28 T 13-10-2018 IPR021139 NYN domain, limkain-b1-type trd_1470 8817885845ea71b918443fb5b1872c27 220 Gene3D G3DSA:3.30.70.3270 94 213 1.7E-32 T 13-10-2018 trd_1470 8817885845ea71b918443fb5b1872c27 220 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 68 206 25.495 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1470 8817885845ea71b918443fb5b1872c27 220 Pfam PF12838 4Fe-4S dicluster domain 122 175 5.5E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_1470 8817885845ea71b918443fb5b1872c27 220 SUPERFAMILY SSF54862 94 199 1.17E-21 T 13-10-2018 trd_1470 8817885845ea71b918443fb5b1872c27 220 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 77 199 1.5E-37 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1470 8817885845ea71b918443fb5b1872c27 220 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 161 172 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_A0035 c049cbc2ec1888de2135c311c15a5152 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 85 1.1E-27 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 trd_A0035 c049cbc2ec1888de2135c311c15a5152 89 PIRSF PIRSF004669 1 89 5.4E-28 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 trd_A0035 c049cbc2ec1888de2135c311c15a5152 89 Pfam PF01313 Bacterial export proteins, family 3 7 77 5.8E-26 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 trd_A0035 c049cbc2ec1888de2135c311c15a5152 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.4E-20 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 trd_A0035 c049cbc2ec1888de2135c311c15a5152 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.4E-20 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 trd_A0035 c049cbc2ec1888de2135c311c15a5152 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.4E-20 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 trd_1022 12c9f798cc49db64499c084b7932f808 258 SUPERFAMILY SSF52317 28 242 3.21E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_1022 12c9f798cc49db64499c084b7932f808 258 Pfam PF07722 Peptidase C26 4 220 3.8E-68 T 13-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 trd_1022 12c9f798cc49db64499c084b7932f808 258 Gene3D G3DSA:3.40.50.880 1 249 1.1E-78 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_A0508 bdd527bb6586bdf8db2c51f67ca55c66 259 Pfam PF03099 Biotin/lipoate A/B protein ligase family 61 173 6.3E-9 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 trd_A0508 bdd527bb6586bdf8db2c51f67ca55c66 259 Gene3D G3DSA:3.30.930.10 11 257 3.1E-63 T 13-10-2018 trd_A0508 bdd527bb6586bdf8db2c51f67ca55c66 259 SUPERFAMILY SSF55681 8 255 7.81E-71 T 13-10-2018 trd_0176 a3a7fe318708299cea6774ca0ffc00ee 236 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 109 199 1.1E-30 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 trd_0176 a3a7fe318708299cea6774ca0ffc00ee 236 Pfam PF00583 Acetyltransferase (GNAT) family 40 179 1.0E-14 T 13-10-2018 IPR000182 GNAT domain trd_0176 a3a7fe318708299cea6774ca0ffc00ee 236 SUPERFAMILY SSF55729 29 200 1.03E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_0334 2877c49502cf9648ee410c2052223104 373 SUPERFAMILY SSF53187 17 370 1.46E-46 T 13-10-2018 trd_0334 2877c49502cf9648ee410c2052223104 373 Gene3D G3DSA:3.30.70.360 179 289 2.2E-55 T 13-10-2018 trd_0334 2877c49502cf9648ee410c2052223104 373 Gene3D G3DSA:3.40.630.10 20 349 2.2E-55 T 13-10-2018 trd_0334 2877c49502cf9648ee410c2052223104 373 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 trd_0334 2877c49502cf9648ee410c2052223104 373 SUPERFAMILY SSF55031 179 286 4.49E-16 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_0334 2877c49502cf9648ee410c2052223104 373 Pfam PF07687 Peptidase dimerisation domain 179 273 1.7E-14 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_0334 2877c49502cf9648ee410c2052223104 373 Pfam PF01546 Peptidase family M20/M25/M40 74 368 1.1E-19 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_1086 a3bda5b84c551ca4df72badec858ccc6 69 SMART SM01234 1 68 2.9E-47 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor trd_1086 a3bda5b84c551ca4df72badec858ccc6 69 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 69 3.9E-29 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor trd_1086 a3bda5b84c551ca4df72badec858ccc6 69 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.83 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor trd_1086 a3bda5b84c551ca4df72badec858ccc6 69 Pfam PF01809 Haemolytic domain 3 68 2.1E-32 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor trd_1086 a3bda5b84c551ca4df72badec858ccc6 69 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 4.0E-18 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor trd_1910 3faddda8fbd01e6ffb817542744175d9 45 Gene3D G3DSA:3.40.30.10 2 45 2.5E-6 T 13-10-2018 trd_1910 3faddda8fbd01e6ffb817542744175d9 45 SUPERFAMILY SSF52833 3 44 8.0E-6 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1910 3faddda8fbd01e6ffb817542744175d9 45 Pfam PF00578 AhpC/TSA family 5 44 1.8E-4 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 trd_0963 701779f17f95bac4c39ead389fc5b727 249 Gene3D G3DSA:3.90.230.10 1 249 1.3E-92 T 13-10-2018 trd_0963 701779f17f95bac4c39ead389fc5b727 249 SUPERFAMILY SSF55920 4 247 1.31E-79 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like trd_0963 701779f17f95bac4c39ead389fc5b727 249 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 248 1.7E-88 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_0963 701779f17f95bac4c39ead389fc5b727 249 Pfam PF00557 Metallopeptidase family M24 13 239 9.2E-51 T 13-10-2018 IPR000994 Peptidase M24 trd_0963 701779f17f95bac4c39ead389fc5b727 249 Hamap MF_01974 Methionine aminopeptidase [map]. 3 249 37.68 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_0963 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 6.2E-18 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_0963 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 6.2E-18 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_0963 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 6.2E-18 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_0963 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 6.2E-18 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 trd_1635 b8f2f515db1c7e24e8152d19b1e02321 146 Gene3D G3DSA:1.10.10.10 1 144 2.0E-50 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1635 b8f2f515db1c7e24e8152d19b1e02321 146 SUPERFAMILY SSF46785 2 136 7.48E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1635 b8f2f515db1c7e24e8152d19b1e02321 146 Pfam PF02082 Transcriptional regulator 1 82 9.6E-26 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type trd_1635 b8f2f515db1c7e24e8152d19b1e02321 146 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 134 4.8E-37 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type trd_1635 b8f2f515db1c7e24e8152d19b1e02321 146 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 SUPERFAMILY SSF50494 42 249 4.46E-59 T 13-10-2018 IPR009003 Peptidase S1, PA clan trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 SUPERFAMILY SSF50156 215 330 8.68E-20 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 Pfam PF13180 PDZ domain 268 337 1.7E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 Gene3D G3DSA:2.30.42.10 241 347 8.0E-22 T 13-10-2018 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 PRINTS PR00834 HtrA/DegQ protease family signature 142 166 2.9E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 PRINTS PR00834 HtrA/DegQ protease family signature 102 122 2.9E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 PRINTS PR00834 HtrA/DegQ protease family signature 81 93 2.9E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 PRINTS PR00834 HtrA/DegQ protease family signature 286 298 2.9E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 PRINTS PR00834 HtrA/DegQ protease family signature 179 196 2.9E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 PRINTS PR00834 HtrA/DegQ protease family signature 201 218 2.9E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 SMART SM00228 244 328 2.3E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 Gene3D G3DSA:2.40.10.120 33 240 7.6E-70 T 13-10-2018 trd_A0315 7d4cb80b813e462d9c3af4e4cb5e00d4 349 Pfam PF13365 Trypsin-like peptidase domain 72 208 1.3E-36 T 13-10-2018 trd_1525 6a9b50c0e3aed1379246d07a9156de95 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 1.2E-26 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1525 6a9b50c0e3aed1379246d07a9156de95 299 Gene3D G3DSA:1.10.3720.10 87 291 1.7E-24 T 13-10-2018 IPR035906 MetI-like superfamily trd_1525 6a9b50c0e3aed1379246d07a9156de95 299 SUPERFAMILY SSF161098 91 276 1.31E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_1584 b393f0e2b2fd73267addf2e2ddc7e221 489 Gene3D G3DSA:3.30.420.240 278 476 2.7E-8 T 13-10-2018 trd_0143 41af3ba86320493ba1366499675ef7ed 154 Gene3D G3DSA:2.40.50.100 3 138 2.1E-27 T 13-10-2018 trd_0143 41af3ba86320493ba1366499675ef7ed 154 Pfam PF01597 Glycine cleavage H-protein 22 134 1.0E-28 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate trd_0143 41af3ba86320493ba1366499675ef7ed 154 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 60 89 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 trd_0143 41af3ba86320493ba1366499675ef7ed 154 SUPERFAMILY SSF51230 21 135 9.82E-24 T 13-10-2018 IPR011053 Single hybrid motif trd_A0475 49d13f9ad706757ae9bc72340044ce3f 316 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 108 312 1.9E-78 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 trd_A0475 49d13f9ad706757ae9bc72340044ce3f 316 Gene3D G3DSA:3.90.850.10 103 316 1.6E-92 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_A0475 49d13f9ad706757ae9bc72340044ce3f 316 SUPERFAMILY SSF56529 97 314 1.83E-87 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_A0076 a45590dfb2ef5c635804071c6ef0e81d 240 SUPERFAMILY SSF102198 3 238 1.23E-53 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_A0076 a45590dfb2ef5c635804071c6ef0e81d 240 Gene3D G3DSA:3.50.30.50 1 240 6.6E-52 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_A0076 a45590dfb2ef5c635804071c6ef0e81d 240 Pfam PF04199 Putative cyclase 6 174 2.7E-35 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 9.4E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.4E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.4E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.4E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 SUPERFAMILY SSF52172 5 135 7.4E-29 T 13-10-2018 IPR011006 CheY-like superfamily trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 SUPERFAMILY SSF46894 145 217 5.1E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 Pfam PF00072 Response regulator receiver domain 8 119 1.9E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 Gene3D G3DSA:3.40.50.12740 6 216 1.2E-60 T 13-10-2018 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 SMART SM00448 6 118 1.1E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1816 b1b90cf62b186642cfd3a4848a6d3a9f 221 SMART SM00421 153 210 3.5E-26 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1374 ce54bc6f2cf1d88263bb2323513ab050 517 Gene3D G3DSA:3.50.50.60 7 88 5.7E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1374 ce54bc6f2cf1d88263bb2323513ab050 517 Gene3D G3DSA:3.50.50.60 196 298 1.2E-5 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1374 ce54bc6f2cf1d88263bb2323513ab050 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 391 407 9.7E-5 T 13-10-2018 trd_1374 ce54bc6f2cf1d88263bb2323513ab050 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 9.7E-5 T 13-10-2018 trd_1374 ce54bc6f2cf1d88263bb2323513ab050 517 SUPERFAMILY SSF51905 4 490 9.79E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1374 ce54bc6f2cf1d88263bb2323513ab050 517 Pfam PF01593 Flavin containing amine oxidoreductase 16 487 4.1E-16 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 trd_0149 d66c7e07553ba66bc4945fdc6b5899f8 255 SUPERFAMILY SSF52402 1 250 2.09E-42 T 13-10-2018 trd_0149 d66c7e07553ba66bc4945fdc6b5899f8 255 SMART SM00893 23 211 1.1E-21 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_0149 d66c7e07553ba66bc4945fdc6b5899f8 255 Gene3D G3DSA:3.40.50.620 1 248 1.7E-52 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0149 d66c7e07553ba66bc4945fdc6b5899f8 255 Pfam PF01012 Electron transfer flavoprotein domain 26 209 2.6E-25 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 trd_1785 154ab0c278e11ce589409c9d02c14e52 241 Gene3D G3DSA:1.20.120.1200 5 169 3.8E-39 T 13-10-2018 trd_1785 154ab0c278e11ce589409c9d02c14e52 241 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 167 9.5E-34 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 16 118 1.2E-12 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 11 325 1.5E-41 T 13-10-2018 trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 SMART SM00922 140 233 1.8E-25 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 185 216 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 Pfam PF13378 Enolase C-terminal domain-like 144 350 6.9E-42 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 Gene3D G3DSA:3.30.390.10 3 117 2.8E-22 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 Gene3D G3DSA:3.20.20.120 118 350 5.6E-61 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 SUPERFAMILY SSF51604 126 351 5.9E-55 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 SUPERFAMILY SSF54826 5 119 1.73E-16 T 13-10-2018 trd_A0306 c7f6a6fb70d6f26967f3cac1ac7a4118 361 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 6 332 21.718 T 13-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 trd_0014 3e651dd8041a6449e0e72f2e63b4b592 217 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 6 202 35.165 T 13-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 trd_0014 3e651dd8041a6449e0e72f2e63b4b592 217 Pfam PF00588 SpoU rRNA Methylase family 24 166 4.9E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 trd_0014 3e651dd8041a6449e0e72f2e63b4b592 217 SUPERFAMILY SSF75217 7 189 2.94E-45 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases trd_0014 3e651dd8041a6449e0e72f2e63b4b592 217 Gene3D G3DSA:3.40.1280.10 3 198 3.7E-60 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal trd_0638 5f8bc774121daf6543c707fce93a5805 339 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 217 321 1.2E-15 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 trd_0638 5f8bc774121daf6543c707fce93a5805 339 Gene3D G3DSA:3.40.190.10 6 220 2.5E-57 T 13-10-2018 trd_0638 5f8bc774121daf6543c707fce93a5805 339 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 5 207 6.2E-61 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 trd_0638 5f8bc774121daf6543c707fce93a5805 339 SUPERFAMILY SSF54913 238 320 5.56E-7 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_0638 5f8bc774121daf6543c707fce93a5805 339 Pfam PF08029 HisG, C-terminal domain 236 316 1.8E-15 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 trd_0638 5f8bc774121daf6543c707fce93a5805 339 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 164 185 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 trd_0638 5f8bc774121daf6543c707fce93a5805 339 Gene3D G3DSA:3.40.190.10 97 201 2.5E-57 T 13-10-2018 trd_0638 5f8bc774121daf6543c707fce93a5805 339 SUPERFAMILY SSF53850 4 220 2.88E-50 T 13-10-2018 trd_0638 5f8bc774121daf6543c707fce93a5805 339 Pfam PF01634 ATP phosphoribosyltransferase 54 227 2.1E-40 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 trd_0638 5f8bc774121daf6543c707fce93a5805 339 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 4 322 26.447 T 13-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 trd_0804 d92e5b1de1a7ffa43718aec2607702fc 136 Pfam PF02310 B12 binding domain 5 116 2.0E-23 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 trd_0804 d92e5b1de1a7ffa43718aec2607702fc 136 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 4 131 3.1E-58 T 13-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 trd_0804 d92e5b1de1a7ffa43718aec2607702fc 136 Gene3D G3DSA:3.40.50.280 1 134 2.2E-58 T 13-10-2018 trd_0804 d92e5b1de1a7ffa43718aec2607702fc 136 SUPERFAMILY SSF52242 3 127 4.45E-50 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 134 150 4.7E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 152 172 4.7E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 4.7E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 103 116 4.7E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 95 183 6.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 185 7.6E-26 T 13-10-2018 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 80 189 9.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 SUPERFAMILY SSF56784 8 220 3.8E-54 T 13-10-2018 IPR036412 HAD-like superfamily trd_A0624 be7e0a8466df9f53845ddfa6ace26b6d 237 Gene3D G3DSA:1.10.150.240 24 85 4.7E-28 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 trd_1661 44cc66ecea50722569c2d128a24f2bc0 216 SMART SM00014 89 202 7.0E-10 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase trd_1661 44cc66ecea50722569c2d128a24f2bc0 216 SUPERFAMILY SSF48317 16 203 9.29E-28 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily trd_1661 44cc66ecea50722569c2d128a24f2bc0 216 Pfam PF01569 PAP2 superfamily 90 202 9.4E-18 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase trd_1661 44cc66ecea50722569c2d128a24f2bc0 216 Gene3D G3DSA:1.20.144.10 114 215 1.3E-16 T 13-10-2018 trd_0620 9497a5138713da2c6685cae39dff99b5 279 Pfam PF00733 Asparagine synthase 15 130 5.3E-6 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 trd_0620 9497a5138713da2c6685cae39dff99b5 279 Gene3D G3DSA:3.40.50.620 2 170 9.8E-26 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0620 9497a5138713da2c6685cae39dff99b5 279 PIRSF PIRSF006661 2 272 2.8E-102 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 trd_0620 9497a5138713da2c6685cae39dff99b5 279 SUPERFAMILY SSF52402 21 223 9.04E-37 T 13-10-2018 trd_0620 9497a5138713da2c6685cae39dff99b5 279 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 8 261 2.9E-77 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 trd_1219 4474898151a4d9777a9607e2452bbef9 248 SUPERFAMILY SSF52540 15 229 9.87E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1219 4474898151a4d9777a9607e2452bbef9 248 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 19 207 4.4E-45 T 13-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 trd_1219 4474898151a4d9777a9607e2452bbef9 248 Pfam PF00005 ABC transporter 34 174 1.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1219 4474898151a4d9777a9607e2452bbef9 248 SMART SM00382 43 224 1.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1219 4474898151a4d9777a9607e2452bbef9 248 Gene3D G3DSA:3.40.50.300 11 239 1.9E-64 T 13-10-2018 trd_1088 7aebf08e2fbf06ad937709713ef17620 56 ProSitePatterns PS00784 Ribosomal protein L34 signature. 3 22 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1088 7aebf08e2fbf06ad937709713ef17620 56 Pfam PF00468 Ribosomal protein L34 3 45 2.3E-23 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1088 7aebf08e2fbf06ad937709713ef17620 56 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 45 3.4E-21 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1088 7aebf08e2fbf06ad937709713ef17620 56 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 3 31 1.0E-6 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1088 7aebf08e2fbf06ad937709713ef17620 56 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 2 45 14.633 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0422 4d8acd00f75e3254a7ca6e59ff46fce7 472 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 471 201.232 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 trd_0422 4d8acd00f75e3254a7ca6e59ff46fce7 472 Pfam PF03841 L-seryl-tRNA selenium transferase 86 453 4.5E-138 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 trd_0422 4d8acd00f75e3254a7ca6e59ff46fce7 472 SUPERFAMILY SSF53383 76 469 8.31E-47 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0422 4d8acd00f75e3254a7ca6e59ff46fce7 472 Gene3D G3DSA:3.40.640.10 98 361 3.3E-156 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0422 4d8acd00f75e3254a7ca6e59ff46fce7 472 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 16 466 3.5E-165 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 trd_0422 4d8acd00f75e3254a7ca6e59ff46fce7 472 Gene3D G3DSA:3.90.1150.110 19 457 3.3E-156 T 13-10-2018 trd_1326 fdec45947ab23c0c6488c47a1b0c6a2c 123 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 119 2.1E-38 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 trd_1326 fdec45947ab23c0c6488c47a1b0c6a2c 123 TIGRFAM TIGR00526 folB_dom: FolB domain 3 121 4.2E-31 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 trd_1326 fdec45947ab23c0c6488c47a1b0c6a2c 123 Pfam PF02152 Dihydroneopterin aldolase 6 118 6.6E-37 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 trd_1326 fdec45947ab23c0c6488c47a1b0c6a2c 123 SMART SM00905 5 119 2.6E-51 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 trd_1326 fdec45947ab23c0c6488c47a1b0c6a2c 123 Gene3D G3DSA:3.30.1130.10 2 123 1.2E-43 T 13-10-2018 trd_1326 fdec45947ab23c0c6488c47a1b0c6a2c 123 SUPERFAMILY SSF55620 1 121 1.02E-38 T 13-10-2018 trd_A0663 d619ae1decc15cd352457b8c144cf700 152 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 4 145 3.9E-27 T 13-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like trd_A0663 d619ae1decc15cd352457b8c144cf700 152 SUPERFAMILY SSF55298 2 151 2.67E-57 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 trd_A0663 d619ae1decc15cd352457b8c144cf700 152 Gene3D G3DSA:3.30.1330.40 1 152 5.1E-65 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 trd_0888 df74e0d78fe78950659a95130f6cd10f 162 SMART SM00116 76 123 2.5E-11 T 13-10-2018 IPR000644 CBS domain trd_0888 df74e0d78fe78950659a95130f6cd10f 162 SMART SM00116 18 66 3.0E-14 T 13-10-2018 IPR000644 CBS domain trd_0888 df74e0d78fe78950659a95130f6cd10f 162 SUPERFAMILY SSF57802 124 151 1.82E-5 T 13-10-2018 trd_0888 df74e0d78fe78950659a95130f6cd10f 162 Gene3D G3DSA:3.10.580.10 3 64 1.6E-17 T 13-10-2018 trd_0888 df74e0d78fe78950659a95130f6cd10f 162 Pfam PF00571 CBS domain 69 122 9.0E-15 T 13-10-2018 IPR000644 CBS domain trd_0888 df74e0d78fe78950659a95130f6cd10f 162 Pfam PF00571 CBS domain 11 64 1.5E-16 T 13-10-2018 IPR000644 CBS domain trd_0888 df74e0d78fe78950659a95130f6cd10f 162 Gene3D G3DSA:2.20.28.10 125 156 1.0E-6 T 13-10-2018 trd_0888 df74e0d78fe78950659a95130f6cd10f 162 SUPERFAMILY SSF54631 6 121 1.39E-35 T 13-10-2018 trd_0888 df74e0d78fe78950659a95130f6cd10f 162 Gene3D G3DSA:3.10.580.10 65 124 1.8E-17 T 13-10-2018 trd_0605 7520b04ccec858f695fe2c739594f65f 161 Pfam PF11290 Protein of unknown function (DUF3090) 3 151 1.4E-37 T 13-10-2018 IPR021441 Protein of unknown function DUF3090 trd_1961 24eec684e53e351d393d8ffd0cda65b2 121 SMART SM00257 74 118 1.7E-18 T 13-10-2018 IPR018392 LysM domain trd_1961 24eec684e53e351d393d8ffd0cda65b2 121 SUPERFAMILY SSF54106 73 118 8.37E-14 T 13-10-2018 trd_1961 24eec684e53e351d393d8ffd0cda65b2 121 Pfam PF01476 LysM domain 75 118 1.5E-17 T 13-10-2018 IPR018392 LysM domain trd_1961 24eec684e53e351d393d8ffd0cda65b2 121 Gene3D G3DSA:3.10.350.10 60 121 5.8E-20 T 13-10-2018 IPR036779 LysM domain superfamily trd_A0699 a2e506e48fed32f688b0764496404a28 557 PIRSF PIRSF002741 9 556 9.2E-136 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_A0699 a2e506e48fed32f688b0764496404a28 557 Gene3D G3DSA:3.40.190.10 228 543 3.9E-168 T 13-10-2018 trd_A0699 a2e506e48fed32f688b0764496404a28 557 SUPERFAMILY SSF53850 63 553 1.02E-157 T 13-10-2018 trd_A0699 a2e506e48fed32f688b0764496404a28 557 Gene3D G3DSA:3.90.76.10 77 227 3.9E-168 T 13-10-2018 trd_A0699 a2e506e48fed32f688b0764496404a28 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 105 471 9.1E-110 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_A0699 a2e506e48fed32f688b0764496404a28 557 Gene3D G3DSA:3.10.105.10 309 530 3.9E-168 T 13-10-2018 trd_1647 6af0874e20a02f8ac99395ce1a87d556 413 SMART SM00644 178 322 6.8E-22 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1647 6af0874e20a02f8ac99395ce1a87d556 413 SUPERFAMILY SSF55846 172 322 1.54E-35 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1647 6af0874e20a02f8ac99395ce1a87d556 413 Gene3D G3DSA:3.40.80.10 167 322 1.6E-37 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_1647 6af0874e20a02f8ac99395ce1a87d556 413 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 35 159 3.3E-5 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 trd_1647 6af0874e20a02f8ac99395ce1a87d556 413 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 189 308 1.3E-18 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 SUPERFAMILY SSF52467 183 380 5.05E-61 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 449 468 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 Gene3D G3DSA:3.40.50.970 382 587 1.1E-65 T 13-10-2018 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 221 356 1.7E-48 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 34 195 1.4E-57 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 Gene3D G3DSA:3.40.50.970 24 204 2.9E-72 T 13-10-2018 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 Gene3D G3DSA:3.40.50.1220 216 378 4.2E-61 T 13-10-2018 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 SUPERFAMILY SSF52518 30 208 1.03E-62 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 412 558 3.1E-44 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 34 582 7.2E-231 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 trd_0627 ae4b8b68a5a61858c6b5a8007036deaa 590 SUPERFAMILY SSF52518 390 584 1.68E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0522 b63e4e73458ac6fb4fdb60d214ca20d2 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 295 3.5E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0522 b63e4e73458ac6fb4fdb60d214ca20d2 304 SUPERFAMILY SSF161098 29 298 1.03E-56 T 13-10-2018 IPR035906 MetI-like superfamily trd_0522 b63e4e73458ac6fb4fdb60d214ca20d2 304 Gene3D G3DSA:1.10.3720.10 32 303 6.2E-56 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0355 e9ccf8542afe610131e8e399fe833133 267 SUPERFAMILY SSF52540 24 241 1.81E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0355 e9ccf8542afe610131e8e399fe833133 267 Pfam PF00005 ABC transporter 41 181 6.0E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0355 e9ccf8542afe610131e8e399fe833133 267 Gene3D G3DSA:3.40.50.300 14 258 1.0E-60 T 13-10-2018 trd_A0355 e9ccf8542afe610131e8e399fe833133 267 SMART SM00382 49 228 1.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1916 e00f83b30fe59f6fe1041c09f8345042 593 SUPERFAMILY SSF51445 51 399 2.15E-32 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1916 e00f83b30fe59f6fe1041c09f8345042 593 Gene3D G3DSA:3.20.20.80 56 399 2.9E-36 T 13-10-2018 trd_1916 e00f83b30fe59f6fe1041c09f8345042 593 Pfam PF11790 Glycosyl hydrolase catalytic core 206 356 4.6E-7 T 13-10-2018 IPR024655 Uncharacterised protein family, glycosyl hydrolase catalytic domain trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 18 556 9.8E-139 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 273 292 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 438 453 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 383 401 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 462 479 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 244 260 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 40 65 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 425 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 141 160 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 123 141 4.3E-71 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 Gene3D G3DSA:3.60.20.40 383 564 9.1E-54 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 Pfam PF01019 Gamma-glutamyltranspeptidase 33 532 5.4E-144 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 Gene3D G3DSA:1.10.246.130 260 375 2.3E-32 T 13-10-2018 trd_1331 31b2bbf4c7a8d7b139808bf01fa485c3 566 SUPERFAMILY SSF56235 11 556 1.62E-158 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 Gene3D G3DSA:3.20.20.120 105 350 1.2E-130 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 SMART SM00922 132 237 3.6E-25 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 Gene3D G3DSA:3.30.390.10 5 360 1.2E-130 T 13-10-2018 IPR029017 Enolase-like, N-terminal trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 Pfam PF13378 Enolase C-terminal domain-like 136 356 2.4E-66 T 13-10-2018 IPR029065 Enolase C-terminal domain-like trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 SUPERFAMILY SSF54826 1 116 1.84E-28 T 13-10-2018 trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 111 1.1E-17 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain trd_A0591 b20f4caf08a6f837efd28b4550ae5aab 384 SUPERFAMILY SSF51604 99 365 1.02E-84 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily trd_1072 fa62b7bf058cfbc6a34b0a98976d1905 244 Pfam PF03737 Aldolase/RraA 36 187 1.0E-29 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein trd_1072 fa62b7bf058cfbc6a34b0a98976d1905 244 SUPERFAMILY SSF89562 20 197 2.35E-39 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily trd_1072 fa62b7bf058cfbc6a34b0a98976d1905 244 Gene3D G3DSA:3.50.30.100 8 208 6.2E-52 T 13-10-2018 trd_A0788 b1d5506931bcf7791cca2e8e0e50be64 584 Gene3D G3DSA:3.40.50.12780 34 468 1.0E-129 T 13-10-2018 trd_A0788 b1d5506931bcf7791cca2e8e0e50be64 584 ProSitePatterns PS00455 Putative AMP-binding domain signature. 225 236 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_A0788 b1d5506931bcf7791cca2e8e0e50be64 584 Pfam PF00501 AMP-binding enzyme 46 475 8.1E-115 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_A0788 b1d5506931bcf7791cca2e8e0e50be64 584 SUPERFAMILY SSF56801 18 569 3.66E-168 T 13-10-2018 trd_A0788 b1d5506931bcf7791cca2e8e0e50be64 584 Gene3D G3DSA:3.30.300.310 471 574 1.4E-31 T 13-10-2018 trd_A0788 b1d5506931bcf7791cca2e8e0e50be64 584 Pfam PF13193 AMP-binding enzyme C-terminal domain 484 559 8.1E-21 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_0547 b244bac7e9badb0df24961015aecadce 179 Pfam PF01923 Cobalamin adenosyltransferase 3 164 1.8E-46 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 trd_0547 b244bac7e9badb0df24961015aecadce 179 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 3 171 1.6E-42 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 trd_0547 b244bac7e9badb0df24961015aecadce 179 Gene3D G3DSA:1.20.1200.10 11 178 4.8E-49 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 trd_0547 b244bac7e9badb0df24961015aecadce 179 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 8 142 2.0E-19 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 trd_0547 b244bac7e9badb0df24961015aecadce 179 SUPERFAMILY SSF89028 2 172 4.71E-50 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 trd_1517 e25ee87e11239811eeda7dc5ebc1236e 216 Pfam PF13847 Methyltransferase domain 57 168 2.5E-17 T 13-10-2018 IPR025714 Methyltransferase domain trd_1517 e25ee87e11239811eeda7dc5ebc1236e 216 SUPERFAMILY SSF53335 39 208 1.15E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1517 e25ee87e11239811eeda7dc5ebc1236e 216 Gene3D G3DSA:3.40.50.150 26 203 2.0E-37 T 13-10-2018 trd_A0336 4f8df09c60a4ef887d9adb0b496de14d 196 Gene3D G3DSA:3.30.1330.110 2 194 5.9E-68 T 13-10-2018 IPR035936 BB2672 superfamily trd_A0336 4f8df09c60a4ef887d9adb0b496de14d 196 SUPERFAMILY SSF160519 6 188 5.62E-62 T 13-10-2018 IPR035936 BB2672 superfamily trd_A0336 4f8df09c60a4ef887d9adb0b496de14d 196 Pfam PF06684 Amino acid synthesis 8 182 1.1E-64 T 13-10-2018 IPR009569 Amino acid synthesis, putative trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 Gene3D G3DSA:3.40.50.970 1 166 7.0E-36 T 13-10-2018 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 Gene3D G3DSA:3.40.50.970 354 544 1.7E-41 T 13-10-2018 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 164 1.9E-37 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 Gene3D G3DSA:3.40.50.1220 176 353 3.6E-47 T 13-10-2018 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 184 318 2.9E-34 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 423 442 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 SUPERFAMILY SSF52518 2 176 3.34E-30 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 533 6.4E-25 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 SUPERFAMILY SSF52467 149 351 1.18E-44 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily trd_A0791 474f178a4f58700f8fd8485f1b60c6c8 545 SUPERFAMILY SSF52518 362 539 1.84E-38 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0742 99854bd2fa510e6cd44d64fe41a4cb76 259 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 253 1.2E-80 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 trd_0742 99854bd2fa510e6cd44d64fe41a4cb76 259 Gene3D G3DSA:3.20.20.140 1 254 4.4E-94 T 13-10-2018 trd_0742 99854bd2fa510e6cd44d64fe41a4cb76 259 SUPERFAMILY SSF51556 3 254 1.4E-88 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0742 99854bd2fa510e6cd44d64fe41a4cb76 259 Pfam PF01026 TatD related DNase 4 252 4.6E-81 T 13-10-2018 IPR001130 TatD family GO:0016788 trd_0742 99854bd2fa510e6cd44d64fe41a4cb76 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 trd_0742 99854bd2fa510e6cd44d64fe41a4cb76 259 PIRSF PIRSF005902 1 257 1.4E-79 T 13-10-2018 IPR001130 TatD family GO:0016788 trd_A0279 aae992f5cb96b41ca50512bc9edefc65 207 Pfam PF12635 Protein of unknown function (DUF3780) 5 203 6.7E-66 T 13-10-2018 IPR024220 Protein of unknown function DUF3780 trd_0276 2d974afd6239cf034e805f9f913cf932 38 Gene3D G3DSA:1.10.10.10 1 38 3.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0276 2d974afd6239cf034e805f9f913cf932 38 SUPERFAMILY SSF46767 3 36 1.31E-8 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 trd_0276 2d974afd6239cf034e805f9f913cf932 38 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 3 35 1.2E-8 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 trd_0971 1fc38e2347efe80823b362110979fed6 135 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 5 135 31.975 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0971 1fc38e2347efe80823b362110979fed6 135 ProSitePatterns PS00053 Ribosomal protein S8 signature. 105 122 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0971 1fc38e2347efe80823b362110979fed6 135 Pfam PF00410 Ribosomal protein S8 8 135 1.3E-49 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0971 1fc38e2347efe80823b362110979fed6 135 Gene3D G3DSA:3.30.1490.10 82 135 2.0E-26 T 13-10-2018 trd_0971 1fc38e2347efe80823b362110979fed6 135 Gene3D G3DSA:3.30.1370.30 7 81 2.0E-25 T 13-10-2018 trd_0971 1fc38e2347efe80823b362110979fed6 135 SUPERFAMILY SSF56047 6 135 2.88E-45 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 PIRSF PIRSF001529 1 424 4.0E-168 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 SUPERFAMILY SSF55681 115 416 1.39E-97 T 13-10-2018 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 219 398 8.2E-33 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 Gene3D G3DSA:3.30.930.10 104 426 8.6E-124 T 13-10-2018 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 106 2.5E-29 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 SUPERFAMILY SSF46589 1 111 1.2E-29 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 Gene3D G3DSA:1.10.287.40 1 103 1.7E-26 T 13-10-2018 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 262 274 2.7E-26 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 349 365 2.7E-26 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 331 347 2.7E-26 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 314 327 2.7E-26 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 274 287 2.7E-26 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 420 41.501 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1742 36d489aacc7c6a288db5cc3f6e0aed8e 445 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 415 4.0E-154 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 trd_1797 84cc561a1b7ff6555530599e796280c4 210 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 71 179 1.2E-10 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase trd_A0056 ba42f6d96291346c570a13da8490fe31 192 Gene3D G3DSA:2.20.25.90 42 105 7.8E-22 T 13-10-2018 trd_A0056 ba42f6d96291346c570a13da8490fe31 192 SUPERFAMILY SSF53706 41 192 1.31E-47 T 13-10-2018 trd_A0056 ba42f6d96291346c570a13da8490fe31 192 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 48 98 4.9E-19 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0056 ba42f6d96291346c570a13da8490fe31 192 SMART SM00926 47 101 1.7E-20 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0056 ba42f6d96291346c570a13da8490fe31 192 Gene3D G3DSA:3.40.50.740 106 192 4.5E-32 T 13-10-2018 trd_A0056 ba42f6d96291346c570a13da8490fe31 192 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 39 6.2E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal trd_0312 e616c4029f7a887a55028d02af5da12d 304 Pfam PF10778 Halocarboxylic acid dehydrogenase DehI 42 173 1.7E-29 T 13-10-2018 IPR019714 2-haloacid dehalogenase, DehI GO:0019120 trd_1118 4b5f9548dc41c49b9d5270656bc0a80e 326 SUPERFAMILY SSF103481 207 308 1.57E-11 T 13-10-2018 trd_1118 4b5f9548dc41c49b9d5270656bc0a80e 326 Pfam PF00892 EamA-like transporter family 30 158 5.5E-11 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_1118 4b5f9548dc41c49b9d5270656bc0a80e 326 Pfam PF00892 EamA-like transporter family 170 303 5.4E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0252 d5044e689cd4789ef99ea72367ffb90f 245 Pfam PF04199 Putative cyclase 16 160 4.2E-14 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_A0252 d5044e689cd4789ef99ea72367ffb90f 245 SUPERFAMILY SSF102198 14 146 8.63E-14 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_A0252 d5044e689cd4789ef99ea72367ffb90f 245 Gene3D G3DSA:3.50.30.50 4 169 3.0E-11 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 trd_0441 15f1501db643235cd7676343b4949ed3 503 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 38 49 1.4E-6 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_0441 15f1501db643235cd7676343b4949ed3 503 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 85 102 1.4E-6 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_0441 15f1501db643235cd7676343b4949ed3 503 SUPERFAMILY SSF56601 3 250 1.35E-59 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_0441 15f1501db643235cd7676343b4949ed3 503 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 5 231 7.8E-45 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 trd_0441 15f1501db643235cd7676343b4949ed3 503 Gene3D G3DSA:3.40.710.10 1 275 4.4E-84 T 13-10-2018 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 Gene3D G3DSA:1.10.150.530 26 86 7.9E-14 T 13-10-2018 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 Pfam PF04055 Radical SAM superfamily 132 295 4.6E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 26 370 70.874 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 Gene3D G3DSA:3.20.20.70 91 355 1.1E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 SUPERFAMILY SSF102114 118 339 3.01E-17 T 13-10-2018 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 24 373 4.6E-124 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 PIRSF PIRSF006004 19 379 1.2E-134 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 trd_0314 00333c8f848f4abd2375fdf0a42e8161 379 SMART SM00729 126 341 0.0058 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 SUPERFAMILY SSF56235 11 543 2.32E-155 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 376 394 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 45 70 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 130 149 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 352 370 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 228 244 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 257 276 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 112 130 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 422 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 430 447 1.8E-44 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 Gene3D G3DSA:3.60.20.40 354 543 9.0E-55 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 Pfam PF01019 Gamma-glutamyltranspeptidase 38 537 1.9E-141 T 13-10-2018 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 25 535 9.9E-111 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 trd_0358 1c3b8204a998a7f0be1fe342a73ec606 543 Gene3D G3DSA:1.10.246.130 244 353 6.2E-25 T 13-10-2018 trd_0661 f6f8875c7fb50924d5cf68f79524f55c 149 Pfam PF07977 FabA-like domain 11 133 1.8E-34 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 trd_0661 f6f8875c7fb50924d5cf68f79524f55c 149 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 4 138 4.2E-56 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 trd_0661 f6f8875c7fb50924d5cf68f79524f55c 149 SUPERFAMILY SSF54637 2 138 6.63E-49 T 13-10-2018 IPR029069 HotDog domain superfamily trd_0661 f6f8875c7fb50924d5cf68f79524f55c 149 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 141 34.192 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 trd_0661 f6f8875c7fb50924d5cf68f79524f55c 149 Gene3D G3DSA:3.10.129.10 1 140 7.7E-57 T 13-10-2018 trd_A0676 8b530d538cd7224aa0b7bc334ad73afb 347 Pfam PF00296 Luciferase-like monooxygenase 7 300 4.9E-58 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_A0676 8b530d538cd7224aa0b7bc334ad73afb 347 SUPERFAMILY SSF51679 3 328 6.15E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_A0676 8b530d538cd7224aa0b7bc334ad73afb 347 TIGRFAM TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family 4 327 1.5E-91 T 13-10-2018 IPR019945 F420-dependent glucose-6-phosphate dehydrogenase-related trd_A0676 8b530d538cd7224aa0b7bc334ad73afb 347 Gene3D G3DSA:3.20.20.30 1 327 2.2E-72 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_0093 08254e55e5a2f2fc341c1eca18228dd1 191 SUPERFAMILY SSF55144 5 190 3.66E-44 T 13-10-2018 IPR009097 Cyclic phosphodiesterase trd_0093 08254e55e5a2f2fc341c1eca18228dd1 191 Pfam PF13563 2'-5' RNA ligase superfamily 20 173 2.4E-19 T 13-10-2018 trd_0093 08254e55e5a2f2fc341c1eca18228dd1 191 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 190 25.644 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 trd_0093 08254e55e5a2f2fc341c1eca18228dd1 191 Gene3D G3DSA:3.90.1140.10 5 191 1.3E-50 T 13-10-2018 trd_0093 08254e55e5a2f2fc341c1eca18228dd1 191 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 189 1.9E-43 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 Pfam PF02926 THUMP domain 42 165 7.4E-19 T 13-10-2018 IPR004114 THUMP domain GO:0003723 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 SUPERFAMILY SSF52402 178 384 2.43E-45 T 13-10-2018 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 407 121.589 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 SMART SM00981 78 168 3.4E-15 T 13-10-2018 IPR004114 THUMP domain GO:0003723 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 178 373 1.3E-63 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 Gene3D G3DSA:3.40.50.620 178 390 6.8E-65 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 Gene3D G3DSA:3.30.2130.30 3 177 3.0E-44 T 13-10-2018 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 SUPERFAMILY SSF143437 8 176 4.71E-38 T 13-10-2018 trd_A0421 cbef7306f843f98b9f850b5a9df84ed4 407 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 9 375 4.9E-102 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 trd_A0074 100828dc04efca71704efadd7db74931 205 Gene3D G3DSA:1.10.3210.10 5 175 8.6E-10 T 13-10-2018 trd_A0074 100828dc04efca71704efadd7db74931 205 SUPERFAMILY SSF109604 8 178 2.83E-12 T 13-10-2018 trd_A0092 2b251d18d305b3f68db331da3a33bd17 423 SUPERFAMILY SSF103473 5 390 1.2E-42 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0092 2b251d18d305b3f68db331da3a33bd17 423 Gene3D G3DSA:1.20.1250.20 2 394 1.8E-36 T 13-10-2018 trd_A0092 2b251d18d305b3f68db331da3a33bd17 423 Pfam PF07690 Major Facilitator Superfamily 31 357 5.8E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0708 462225fb222a441df462443341e43ff7 371 SUPERFAMILY SSF56601 6 360 2.82E-78 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_A0708 462225fb222a441df462443341e43ff7 371 Pfam PF00144 Beta-lactamase 19 356 6.1E-65 T 13-10-2018 IPR001466 Beta-lactamase-related trd_A0708 462225fb222a441df462443341e43ff7 371 Gene3D G3DSA:3.40.710.10 2 366 3.0E-84 T 13-10-2018 trd_0792 7de5b38970bba38f5bd66208ce1c4dce 182 SUPERFAMILY SSF52833 19 172 5.81E-37 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0792 7de5b38970bba38f5bd66208ce1c4dce 182 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 30 168 1.2E-35 T 13-10-2018 trd_0792 7de5b38970bba38f5bd66208ce1c4dce 182 Gene3D G3DSA:3.40.30.10 86 181 1.9E-18 T 13-10-2018 trd_0792 7de5b38970bba38f5bd66208ce1c4dce 182 PIRSF PIRSF000216 3 181 3.9E-40 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_0792 7de5b38970bba38f5bd66208ce1c4dce 182 Gene3D G3DSA:1.10.10.1590 15 84 6.7E-11 T 13-10-2018 trd_A0468 76caffad9a3d1ccabb9585034c3a47fb 281 Gene3D G3DSA:1.10.3720.10 6 272 1.2E-55 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0468 76caffad9a3d1ccabb9585034c3a47fb 281 SUPERFAMILY SSF161098 12 281 7.85E-65 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0468 76caffad9a3d1ccabb9585034c3a47fb 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 272 6.1E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1530 b77b236f1c753c285b99b414f277e06b 584 Pfam PF09334 tRNA synthetases class I (M) 7 397 6.3E-149 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1530 b77b236f1c753c285b99b414f277e06b 584 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1530 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:2.20.28.20 140 174 1.3E-156 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 trd_1530 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF52374 3 385 1.45E-95 T 13-10-2018 trd_1530 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF47323 390 578 1.53E-32 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1530 b77b236f1c753c285b99b414f277e06b 584 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 10 514 2.3E-154 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_1530 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:3.40.50.620 7 380 1.3E-156 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1530 b77b236f1c753c285b99b414f277e06b 584 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 578 39.597 T 13-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 trd_1530 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF57770 140 174 6.15E-12 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 trd_1530 b77b236f1c753c285b99b414f277e06b 584 Pfam PF08264 Anticodon-binding domain of tRNA 421 513 4.3E-7 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 trd_1530 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:1.10.730.10 381 572 8.3E-40 T 13-10-2018 trd_1530 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 2.9E-22 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_1530 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 2.9E-22 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_1530 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 2.9E-22 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_1530 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 2.9E-22 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_1530 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 2.9E-22 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_1530 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 2.9E-22 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 trd_A0582 c91cab133ec9fa7b1f9e19ff325b93e1 527 Pfam PF02734 DAK2 domain 50 214 4.1E-32 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 trd_A0582 c91cab133ec9fa7b1f9e19ff325b93e1 527 Gene3D G3DSA:1.25.40.340 24 219 1.8E-9 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 trd_A0582 c91cab133ec9fa7b1f9e19ff325b93e1 527 SUPERFAMILY SSF101473 21 215 7.59E-34 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 trd_A0582 c91cab133ec9fa7b1f9e19ff325b93e1 527 Pfam PF13684 Dihydroxyacetone kinase family 242 437 1.3E-18 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain trd_A0582 c91cab133ec9fa7b1f9e19ff325b93e1 527 SMART SM01120 50 215 8.6E-40 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 trd_A0582 c91cab133ec9fa7b1f9e19ff325b93e1 527 SMART SM01121 241 527 1.1E-8 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain trd_1519 6741d3a8e25517edb601379a548640e1 294 SUPERFAMILY SSF52440 5 91 1.87E-18 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_1519 6741d3a8e25517edb601379a548640e1 294 SUPERFAMILY SSF56059 92 279 4.77E-45 T 13-10-2018 trd_1519 6741d3a8e25517edb601379a548640e1 294 Gene3D G3DSA:3.30.470.80 176 284 9.2E-39 T 13-10-2018 trd_1519 6741d3a8e25517edb601379a548640e1 294 TIGRFAM TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX 6 282 6.1E-93 T 13-10-2018 IPR011870 Lysine biosynthesis enzyme LysX GO:0003824|GO:0005524|GO:0009085 trd_1519 6741d3a8e25517edb601379a548640e1 294 Gene3D G3DSA:3.40.50.20 2 106 2.1E-32 T 13-10-2018 trd_1519 6741d3a8e25517edb601379a548640e1 294 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 6 278 3.0E-83 T 13-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 trd_1519 6741d3a8e25517edb601379a548640e1 294 Gene3D G3DSA:3.30.1490.20 108 175 8.8E-30 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_1519 6741d3a8e25517edb601379a548640e1 294 Pfam PF08443 RimK-like ATP-grasp domain 89 277 3.2E-32 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 trd_0171 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Pfam PF13439 Glycosyltransferase Family 4 20 177 7.5E-17 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_0171 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Gene3D G3DSA:3.40.50.2000 175 353 8.0E-76 T 13-10-2018 trd_0171 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Pfam PF00534 Glycosyl transferases group 1 197 349 1.8E-37 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0171 7d0a05e9237dc2d1f057cc0776bbf2e7 385 SUPERFAMILY SSF53756 18 371 1.61E-85 T 13-10-2018 trd_0171 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Gene3D G3DSA:3.40.50.2000 103 369 8.0E-76 T 13-10-2018 trd_0679 616193972ef5e14f1647b08e1384b2c3 89 Gene3D G3DSA:1.20.5.1030 31 86 2.0E-13 T 13-10-2018 IPR038379 SecE superfamily trd_0679 616193972ef5e14f1647b08e1384b2c3 89 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 36 86 1.5E-14 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0679 616193972ef5e14f1647b08e1384b2c3 89 PRINTS PR01650 Bacterial translocase SecE signature 53 73 6.0E-5 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 trd_0679 616193972ef5e14f1647b08e1384b2c3 89 PRINTS PR01650 Bacterial translocase SecE signature 29 49 6.0E-5 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 trd_0679 616193972ef5e14f1647b08e1384b2c3 89 PRINTS PR01650 Bacterial translocase SecE signature 73 89 6.0E-5 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 trd_0679 616193972ef5e14f1647b08e1384b2c3 89 Hamap MF_00422 Protein translocase subunit SecE [secE]. 30 85 11.237 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 trd_0679 616193972ef5e14f1647b08e1384b2c3 89 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 34 86 5.3E-11 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 trd_0157 1d9d8445306105bb2155b567717bd50b 160 Pfam PF01597 Glycine cleavage H-protein 21 135 1.3E-29 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate trd_0157 1d9d8445306105bb2155b567717bd50b 160 SUPERFAMILY SSF51230 20 133 6.75E-26 T 13-10-2018 IPR011053 Single hybrid motif trd_0157 1d9d8445306105bb2155b567717bd50b 160 Gene3D G3DSA:2.40.50.100 14 145 3.6E-30 T 13-10-2018 trd_A0842 9628b2601e3cbb023e6c49bd7605786f 53 TIGRFAM TIGR03969 mycofactocin: mycofactocin precursor 33 53 2.1E-10 T 13-10-2018 IPR023988 Mycofactocin trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 718 736 2.8E-11 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 577 593 2.8E-11 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 69 88 2.8E-11 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 688 707 2.8E-11 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 658 677 2.8E-11 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 Pfam PF13654 AAA domain 33 551 2.8E-198 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 661 763 2.1E-8 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 Gene3D G3DSA:3.40.50.300 13 173 9.2E-28 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 Gene3D G3DSA:3.40.50.300 234 461 5.6E-63 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 Gene3D G3DSA:1.10.8.60 462 549 1.6E-12 T 13-10-2018 trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 Gene3D G3DSA:3.30.230.10 552 789 1.0E-97 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 SUPERFAMILY SSF52540 42 550 6.37E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0412 3b04ed325431bff13ad80b1b9cdef6b6 827 SUPERFAMILY SSF54211 575 769 1.59E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0418 9207331f042ad50f84f64f937054a297 435 Pfam PF00534 Glycosyl transferases group 1 222 400 2.3E-36 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0418 9207331f042ad50f84f64f937054a297 435 Pfam PF13439 Glycosyltransferase Family 4 37 214 7.8E-32 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_0418 9207331f042ad50f84f64f937054a297 435 SUPERFAMILY SSF53756 18 422 2.62E-91 T 13-10-2018 trd_0418 9207331f042ad50f84f64f937054a297 435 Gene3D G3DSA:3.40.50.2000 211 403 5.0E-129 T 13-10-2018 trd_0418 9207331f042ad50f84f64f937054a297 435 Gene3D G3DSA:3.40.50.2000 21 419 5.0E-129 T 13-10-2018 trd_0113 34620e9fdb707e76d78c3cb311e487e6 115 Pfam PF13083 KH domain 32 103 7.5E-17 T 13-10-2018 trd_0113 34620e9fdb707e76d78c3cb311e487e6 115 SUPERFAMILY SSF54814 55 90 1.18E-6 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 trd_0113 34620e9fdb707e76d78c3cb311e487e6 115 Hamap MF_00088 UPF0109 protein . 30 104 16.266 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 trd_A0915 ad33995f1fe6663c07c0bbcd762fd226 351 Gene3D G3DSA:3.90.25.10 199 327 9.2E-144 T 13-10-2018 trd_A0915 ad33995f1fe6663c07c0bbcd762fd226 351 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 18 332 4.4E-130 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 trd_A0915 ad33995f1fe6663c07c0bbcd762fd226 351 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 18 335 53.19 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 trd_A0915 ad33995f1fe6663c07c0bbcd762fd226 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 21 325 7.7E-128 T 13-10-2018 IPR016040 NAD(P)-binding domain trd_A0915 ad33995f1fe6663c07c0bbcd762fd226 351 Gene3D G3DSA:3.40.50.720 20 315 9.2E-144 T 13-10-2018 trd_A0915 ad33995f1fe6663c07c0bbcd762fd226 351 SUPERFAMILY SSF51735 18 331 2.24E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0988 b0f157584addc8bd5471f1967954be72 156 SUPERFAMILY SSF47973 1 149 1.31E-61 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily trd_0988 b0f157584addc8bd5471f1967954be72 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.727 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 trd_0988 b0f157584addc8bd5471f1967954be72 156 Gene3D G3DSA:1.10.455.10 2 156 5.0E-65 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily trd_0988 b0f157584addc8bd5471f1967954be72 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.1E-68 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 trd_0988 b0f157584addc8bd5471f1967954be72 156 PIRSF PIRSF002122 3 156 6.7E-64 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 trd_0988 b0f157584addc8bd5471f1967954be72 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0988 b0f157584addc8bd5471f1967954be72 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.8E-65 T 13-10-2018 IPR023798 Ribosomal protein S7 domain trd_0439 8569007a3af2aab4f9e0560fc8a67a93 253 SUPERFAMILY SSF69593 19 244 4.71E-51 T 13-10-2018 trd_0439 8569007a3af2aab4f9e0560fc8a67a93 253 SMART SM00563 52 165 4.7E-37 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 trd_0439 8569007a3af2aab4f9e0560fc8a67a93 253 Pfam PF01553 Acyltransferase 38 162 2.2E-26 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 Gene3D G3DSA:2.40.50.140 260 300 1.5E-7 T 13-10-2018 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 Gene3D G3DSA:2.40.50.100 301 368 1.5E-7 T 13-10-2018 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 SUPERFAMILY SSF52540 25 263 4.34E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0881 3db19a69d49881983f6afcc389cd78e3 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 55 372 1.9E-121 T 13-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 Pfam PF08402 TOBE domain 298 373 1.1E-15 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 SMART SM00382 49 232 3.4E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0881 3db19a69d49881983f6afcc389cd78e3 377 Pfam PF00005 ABC transporter 41 182 6.8E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 SUPERFAMILY SSF50331 257 373 1.67E-18 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal trd_0881 3db19a69d49881983f6afcc389cd78e3 377 Gene3D G3DSA:3.40.50.300 21 259 1.5E-78 T 13-10-2018 trd_0881 3db19a69d49881983f6afcc389cd78e3 377 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1095 5b0e95289966ed7c0c5c7f8816f6f871 333 Gene3D G3DSA:3.20.20.140 1 327 2.0E-99 T 13-10-2018 trd_1095 5b0e95289966ed7c0c5c7f8816f6f871 333 Pfam PF04909 Amidohydrolase 3 325 8.3E-47 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_1095 5b0e95289966ed7c0c5c7f8816f6f871 333 SUPERFAMILY SSF51556 2 326 9.87E-86 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0455 f4ac0549c66912c8378f003252bbccc3 304 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 5 237 5.7E-44 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 trd_0455 f4ac0549c66912c8378f003252bbccc3 304 SUPERFAMILY SSF51621 3 248 1.18E-65 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_0455 f4ac0549c66912c8378f003252bbccc3 304 Gene3D G3DSA:3.20.20.60 1 303 1.4E-106 T 13-10-2018 trd_0455 f4ac0549c66912c8378f003252bbccc3 304 PIRSF PIRSF015582 1 303 4.5E-89 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 SUPERFAMILY SSF53383 10 397 2.53E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 Pfam PF00155 Aminotransferase class I and II 38 345 1.8E-50 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 Gene3D G3DSA:3.40.640.10 51 286 4.7E-116 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 119 140 5.5E-13 T 13-10-2018 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 165 189 5.5E-13 T 13-10-2018 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 97 117 5.5E-13 T 13-10-2018 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 231 255 5.5E-13 T 13-10-2018 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 Gene3D G3DSA:3.90.1150.10 21 389 4.7E-116 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0812 44fdf5ad579372bd43df29b94d1e9bf9 403 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 trd_A0652 724c8bf69bd4e667b7536c2103c30075 99 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 23 98 3.4E-18 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 trd_A0652 724c8bf69bd4e667b7536c2103c30075 99 Pfam PF02049 Flagellar hook-basal body complex protein FliE 18 99 4.7E-26 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 trd_A0652 724c8bf69bd4e667b7536c2103c30075 99 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 99 16.159 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 trd_A0652 724c8bf69bd4e667b7536c2103c30075 99 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 29 45 2.6E-10 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 trd_A0652 724c8bf69bd4e667b7536c2103c30075 99 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 63 79 2.6E-10 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 trd_A0652 724c8bf69bd4e667b7536c2103c30075 99 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 84 97 2.6E-10 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 Pfam PF12802 MarR family 46 106 9.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 ProSitePatterns PS01117 MarR-type HTH domain signature. 82 116 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 SMART SM00347 41 142 1.1E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 SUPERFAMILY SSF46785 22 156 5.46E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 Gene3D G3DSA:1.10.10.10 12 159 1.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 PRINTS PR00598 Bacterial regulatory protein MarR family signature 132 152 3.7E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 83 3.7E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 PRINTS PR00598 Bacterial regulatory protein MarR family signature 103 119 3.7E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1705 8702e76be818e1c0d4075c4f3c71185d 221 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 99 3.7E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1508 d31f7186c5fc737bf9a7f2d0026fc9c5 421 Pfam PF05977 Transmembrane secretion effector 13 410 4.0E-27 T 13-10-2018 IPR010290 Transmembrane secretion effector trd_1508 d31f7186c5fc737bf9a7f2d0026fc9c5 421 SUPERFAMILY SSF103473 13 408 1.83E-36 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1508 d31f7186c5fc737bf9a7f2d0026fc9c5 421 Gene3D G3DSA:1.20.1250.20 11 403 7.6E-31 T 13-10-2018 trd_1792 f659527f16dbf7817fb633b3c441de1d 400 Pfam PF00155 Aminotransferase class I and II 66 386 6.7E-32 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_1792 f659527f16dbf7817fb633b3c441de1d 400 Gene3D G3DSA:3.90.1150.10 27 390 5.5E-124 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1792 f659527f16dbf7817fb633b3c441de1d 400 SUPERFAMILY SSF53383 3 392 6.12E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1792 f659527f16dbf7817fb633b3c441de1d 400 Gene3D G3DSA:3.40.640.10 67 284 5.5E-124 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 Gene3D G3DSA:3.90.1150.10 27 382 3.2E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 PIRSF PIRSF000521 170 392 2.1E-30 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 PIRSF PIRSF000521 125 155 4.6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 PIRSF PIRSF000521 21 133 2.7E-10 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 Pfam PF00202 Aminotransferase class-III 26 389 3.8E-114 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 Hamap MF_02084 [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase [lysJ]. 18 390 45.316 T 13-10-2018 IPR037537 [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase GO:0008483 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 219 255 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 SUPERFAMILY SSF53383 21 390 5.03E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1515 af114b4a0fa359d1e32abe2be85b5833 395 Gene3D G3DSA:3.40.640.10 60 300 3.2E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1862 43f822d33cb90cd310644dddad77977e 604 PIRSF PIRSF002741 53 602 5.5E-88 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1862 43f822d33cb90cd310644dddad77977e 604 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 150 519 2.4E-84 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1862 43f822d33cb90cd310644dddad77977e 604 Gene3D G3DSA:3.40.190.10 280 592 2.0E-122 T 13-10-2018 trd_1862 43f822d33cb90cd310644dddad77977e 604 Gene3D G3DSA:3.10.105.10 359 580 2.0E-122 T 13-10-2018 trd_1862 43f822d33cb90cd310644dddad77977e 604 Gene3D G3DSA:3.90.76.10 117 279 2.0E-122 T 13-10-2018 trd_1862 43f822d33cb90cd310644dddad77977e 604 SUPERFAMILY SSF53850 97 600 4.21E-122 T 13-10-2018 trd_A0659 e23dc2e7d6dcac350d65972c956b10db 310 SUPERFAMILY SSF103481 44 144 6.02E-18 T 13-10-2018 trd_A0659 e23dc2e7d6dcac350d65972c956b10db 310 SUPERFAMILY SSF103481 214 293 6.15E-13 T 13-10-2018 trd_A0659 e23dc2e7d6dcac350d65972c956b10db 310 Pfam PF00892 EamA-like transporter family 153 288 9.6E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0659 e23dc2e7d6dcac350d65972c956b10db 310 Pfam PF00892 EamA-like transporter family 14 141 3.7E-24 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 SMART SM00881 79 180 4.6E-12 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 Pfam PF02629 CoA binding domain 82 178 2.3E-16 T 13-10-2018 IPR003781 CoA-binding GO:0048037 trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 Gene3D G3DSA:1.10.10.10 2 78 6.1E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 SUPERFAMILY SSF51735 82 205 2.31E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 1 209 33.984 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 Gene3D G3DSA:3.40.50.720 79 208 3.5E-41 T 13-10-2018 trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 SUPERFAMILY SSF46785 7 78 4.68E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0457 d9f3589f17fee6d7dbcc674a0e68a55f 237 Pfam PF06971 Putative DNA-binding protein N-terminus 6 53 2.9E-20 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 342 364 1.7E-30 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 163 182 1.7E-30 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 304 327 1.7E-30 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 370 393 1.7E-30 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 267 278 1.7E-30 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 411 438 1.7E-30 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 Pfam PF02867 Ribonucleotide reductase, barrel domain 89 557 2.0E-127 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 SUPERFAMILY SSF48168 11 86 9.29E-13 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 Gene3D G3DSA:3.20.70.20 1 570 5.3E-193 T 13-10-2018 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 SUPERFAMILY SSF51998 87 568 2.56E-129 T 13-10-2018 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 12 567 1.1E-180 T 13-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 trd_0949 3dc04d021e3ea0b35afc0874375f0725 589 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 6 85 4.7E-22 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 trd_A0590 a426bd67e897c8cf334b1a0e04d3b558 278 SMART SM00849 24 222 0.001 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_A0590 a426bd67e897c8cf334b1a0e04d3b558 278 Gene3D G3DSA:3.60.15.10 3 273 6.6E-58 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_A0590 a426bd67e897c8cf334b1a0e04d3b558 278 SUPERFAMILY SSF56281 18 242 1.97E-24 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_A0590 a426bd67e897c8cf334b1a0e04d3b558 278 Pfam PF12706 Beta-lactamase superfamily domain 37 233 2.1E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_A0123 1983037e89281c463aa854d41b538d99 702 SUPERFAMILY SSF52540 343 695 6.12E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0123 1983037e89281c463aa854d41b538d99 702 Gene3D G3DSA:3.40.50.300 544 697 2.6E-10 T 13-10-2018 trd_A0123 1983037e89281c463aa854d41b538d99 702 Gene3D G3DSA:3.40.50.300 338 532 5.8E-21 T 13-10-2018 trd_A0123 1983037e89281c463aa854d41b538d99 702 Pfam PF02562 PhoH-like protein 345 390 2.3E-4 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 trd_A0123 1983037e89281c463aa854d41b538d99 702 Pfam PF08378 Nuclease-related domain 153 267 7.7E-12 T 13-10-2018 IPR011528 Nuclease-related domain, NERD trd_1160 c4ee21fa693455f73eda6f5984936f12 275 PIRSF PIRSF017388 14 148 2.8E-24 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 trd_1160 c4ee21fa693455f73eda6f5984936f12 275 PIRSF PIRSF017388 159 241 0.0023 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 trd_1160 c4ee21fa693455f73eda6f5984936f12 275 Pfam PF12146 Serine aminopeptidase, S33 29 238 8.0E-17 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 trd_1160 c4ee21fa693455f73eda6f5984936f12 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 3.3E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1160 c4ee21fa693455f73eda6f5984936f12 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 3.3E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1160 c4ee21fa693455f73eda6f5984936f12 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 3.3E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1160 c4ee21fa693455f73eda6f5984936f12 275 Gene3D G3DSA:3.40.50.1820 13 259 2.2E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1160 c4ee21fa693455f73eda6f5984936f12 275 SUPERFAMILY SSF53474 22 258 1.14E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0920 a943250b1ba0f91f6261bfdf9e4437d7 82 Pfam PF06234 Toluene-4-monooxygenase system protein B (TmoB) 3 80 1.6E-34 T 13-10-2018 IPR009355 Toluene-4-monooxygenase system B trd_A0920 a943250b1ba0f91f6261bfdf9e4437d7 82 Gene3D G3DSA:3.10.20.270 1 82 2.9E-34 T 13-10-2018 IPR036713 TmoB-like superfamily trd_A0920 a943250b1ba0f91f6261bfdf9e4437d7 82 SUPERFAMILY SSF110814 4 80 1.31E-22 T 13-10-2018 IPR036713 TmoB-like superfamily trd_A0335 b4c03e17c4b4ca9d7105398cbce3959a 393 Pfam PF01979 Amidohydrolase family 61 346 9.8E-7 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_A0335 b4c03e17c4b4ca9d7105398cbce3959a 393 SUPERFAMILY SSF51338 26 378 3.14E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_A0335 b4c03e17c4b4ca9d7105398cbce3959a 393 Gene3D G3DSA:3.20.20.140 64 320 1.8E-149 T 13-10-2018 trd_A0335 b4c03e17c4b4ca9d7105398cbce3959a 393 Gene3D G3DSA:2.30.40.10 6 382 1.8E-149 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_A0335 b4c03e17c4b4ca9d7105398cbce3959a 393 SUPERFAMILY SSF51556 61 321 1.53E-17 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_0142 be7dd78a4cc979d5e7d39767678ab7a4 357 SUPERFAMILY SSF82649 269 349 3.87E-5 T 13-10-2018 trd_0142 be7dd78a4cc979d5e7d39767678ab7a4 357 SUPERFAMILY SSF55681 3 249 1.85E-53 T 13-10-2018 trd_0142 be7dd78a4cc979d5e7d39767678ab7a4 357 Gene3D G3DSA:3.30.390.50 260 350 7.3E-21 T 13-10-2018 trd_0142 be7dd78a4cc979d5e7d39767678ab7a4 357 Gene3D G3DSA:3.30.930.10 9 251 2.0E-41 T 13-10-2018 trd_1395 096e6c717d7a4d472c912906d8062078 511 SUPERFAMILY SSF47203 270 489 1.69E-41 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 trd_1395 096e6c717d7a4d472c912906d8062078 511 SUPERFAMILY SSF56645 11 279 1.19E-67 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 trd_1395 096e6c717d7a4d472c912906d8062078 511 PIRSF PIRSF500125 2 509 6.0E-213 T 13-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein trd_1395 096e6c717d7a4d472c912906d8062078 511 Gene3D G3DSA:1.10.3140.10 11 145 9.9E-43 T 13-10-2018 trd_1395 096e6c717d7a4d472c912906d8062078 511 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 285 485 7.9E-60 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal trd_1395 096e6c717d7a4d472c912906d8062078 511 PIRSF PIRSF000331 9 497 2.1E-159 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH trd_1395 096e6c717d7a4d472c912906d8062078 511 Gene3D G3DSA:2.40.110.10 148 277 6.7E-34 T 13-10-2018 trd_1395 096e6c717d7a4d472c912906d8062078 511 Gene3D G3DSA:1.20.140.10 278 472 1.4E-55 T 13-10-2018 trd_1395 096e6c717d7a4d472c912906d8062078 511 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 13 278 3.1E-85 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 SUPERFAMILY SSF51726 395 756 9.68E-122 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 757 35.915 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 430 752 2.8E-152 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 PIRSF PIRSF000382 1 762 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 756 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 313 1.6E-112 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 Gene3D G3DSA:3.20.20.210 6 523 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 Gene3D G3DSA:3.20.20.210 388 755 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1349 dbfcf462c3fd140b5e236d0e5149ce63 763 SUPERFAMILY SSF51726 4 382 1.22E-102 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1092 665cab3886ecf614d54ff7b14cb5e527 420 SUPERFAMILY SSF103473 8 396 2.88E-52 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1092 665cab3886ecf614d54ff7b14cb5e527 420 Pfam PF07690 Major Facilitator Superfamily 26 241 6.4E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1092 665cab3886ecf614d54ff7b14cb5e527 420 Gene3D G3DSA:1.20.1250.20 3 398 2.6E-43 T 13-10-2018 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 3.7E-44 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 Gene3D G3DSA:1.10.287.990 20 90 9.5E-32 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.4E-26 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 4.4E-26 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.4E-26 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 4.4E-26 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 4.4E-26 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 1.1E-30 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 SUPERFAMILY SSF54719 90 201 1.31E-48 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 PIRSF PIRSF000349 1 205 3.5E-86 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 Gene3D G3DSA:2.40.500.20 91 205 6.2E-51 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_0308 52b3fe2b93370ab8786893fe48e29f1d 205 SUPERFAMILY SSF46609 1 91 2.75E-36 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 73 98 4.7E-31 T 13-10-2018 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 101 121 4.7E-31 T 13-10-2018 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 235 261 4.7E-31 T 13-10-2018 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 213 234 4.7E-31 T 13-10-2018 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 303 315 4.7E-31 T 13-10-2018 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 Pfam PF00361 Proton-conducting membrane transporter 124 402 5.2E-66 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 59 109 3.4E-10 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0375 da676d74076dfbcf6ed3a45a4ea0af83 776 Pfam PF13244 Domain of unknown function (DUF4040) 613 678 1.2E-18 T 13-10-2018 IPR025383 Domain of unknown function DUF4040 trd_1534 86b04e27a3269b4a82c80513dd9988c4 157 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 65 153 1.1E-6 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1534 86b04e27a3269b4a82c80513dd9988c4 157 SUPERFAMILY SSF46626 13 157 1.43E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_1534 86b04e27a3269b4a82c80513dd9988c4 157 Gene3D G3DSA:1.10.760.10 25 157 6.3E-12 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_1832 edf588898fcd18a52e9171f76fd380c7 388 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 66 350 5.3E-98 T 13-10-2018 IPR011862 Phosphate binding protein GO:0042301 trd_1832 edf588898fcd18a52e9171f76fd380c7 388 Gene3D G3DSA:3.40.190.10 167 312 2.3E-99 T 13-10-2018 trd_1832 edf588898fcd18a52e9171f76fd380c7 388 SUPERFAMILY SSF53850 85 363 4.17E-83 T 13-10-2018 trd_1832 edf588898fcd18a52e9171f76fd380c7 388 Gene3D G3DSA:3.40.190.10 87 348 2.3E-99 T 13-10-2018 trd_1832 edf588898fcd18a52e9171f76fd380c7 388 Pfam PF12849 PBP superfamily domain 79 337 2.9E-38 T 13-10-2018 IPR024370 PBP domain trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 Gene3D G3DSA:3.40.50.450 9 328 4.3E-102 T 13-10-2018 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PIRSF PIRSF000532 5 371 8.0E-110 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 Gene3D G3DSA:3.40.50.460 157 294 4.3E-102 T 13-10-2018 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 11 30 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 137 154 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 229 241 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 110 126 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 155 173 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 175 191 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 193 210 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 278 300 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 37 50 4.2E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 SUPERFAMILY SSF53784 5 361 7.72E-112 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 7 370 39.5 T 13-10-2018 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 Pfam PF00365 Phosphofructokinase 8 314 7.4E-97 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_0608 59d063072bb5d4c44e35c0b8a36a4f53 375 ProSitePatterns PS00433 Phosphofructokinase signature. 282 300 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 SUPERFAMILY SSF55031 185 294 7.46E-22 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 Gene3D G3DSA:3.30.70.360 185 292 1.1E-114 T 13-10-2018 trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 Gene3D G3DSA:3.40.630.10 19 367 1.1E-114 T 13-10-2018 trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 SUPERFAMILY SSF53187 12 378 1.57E-49 T 13-10-2018 trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 PIRSF PIRSF037238 1 378 2.8E-129 T 13-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 Pfam PF07687 Peptidase dimerisation domain 182 273 3.7E-19 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_1459 cbc3ecff7933bd978fe4964dd42462eb 378 Pfam PF01546 Peptidase family M20/M25/M40 83 376 1.2E-24 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_A0428 faf29fdcebbe72347b7dfd4f042b0752 512 TIGRFAM TIGR00908 2A0305: ethanolamine permease 24 480 3.8E-131 T 13-10-2018 IPR004757 Ethanolamine permease trd_A0428 faf29fdcebbe72347b7dfd4f042b0752 512 Gene3D G3DSA:1.20.1740.10 26 486 3.6E-54 T 13-10-2018 trd_A0428 faf29fdcebbe72347b7dfd4f042b0752 512 Pfam PF00324 Amino acid permease 43 470 1.9E-40 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 trd_A0428 faf29fdcebbe72347b7dfd4f042b0752 512 PIRSF PIRSF006060 9 489 3.1E-73 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 PRINTS PR00412 Epoxide hydrolase signature 34 52 4.9E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 PRINTS PR00412 Epoxide hydrolase signature 259 281 4.9E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 PRINTS PR00412 Epoxide hydrolase signature 98 111 4.9E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 Pfam PF00561 alpha/beta hydrolase fold 29 127 3.0E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 Gene3D G3DSA:3.40.50.1820 2 284 4.0E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0736 bce74812560d00e3ce374c862bcf036f 292 SUPERFAMILY SSF53474 10 284 4.93E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0736 bce74812560d00e3ce374c862bcf036f 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 7.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 7.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0736 bce74812560d00e3ce374c862bcf036f 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 7.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1413 964c145384d47d0ac72cb13685d9c0cc 589 Gene3D G3DSA:3.40.50.300 159 257 1.0E-8 T 13-10-2018 trd_1413 964c145384d47d0ac72cb13685d9c0cc 589 SUPERFAMILY SSF52540 148 505 5.84E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1413 964c145384d47d0ac72cb13685d9c0cc 589 Pfam PF01935 Domain of unknown function DUF87 179 268 3.7E-11 T 13-10-2018 IPR002789 Helicase HerA, central domain trd_1413 964c145384d47d0ac72cb13685d9c0cc 589 Gene3D G3DSA:3.40.50.300 366 505 1.2E-13 T 13-10-2018 trd_1413 964c145384d47d0ac72cb13685d9c0cc 589 SMART SM00382 176 508 9.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0236 dd47695e98b6436be2e5c4fa5ebc02cb 269 Gene3D G3DSA:3.40.630.10 81 234 4.1E-8 T 13-10-2018 trd_1365 e425096bca99b06630353c4fa287827a 264 Pfam PF12822 ECF transporter, substrate-specific component 70 238 6.3E-14 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 trd_1365 e425096bca99b06630353c4fa287827a 264 Gene3D G3DSA:1.10.1760.20 67 247 1.1E-7 T 13-10-2018 trd_1365 e425096bca99b06630353c4fa287827a 264 PIRSF PIRSF037395 1 259 5.7E-54 T 13-10-2018 IPR017196 ECF transporter, predicted substrate-specific component UCP037395 trd_0812 bc8f057e808c95bf1cdd42cc68cf7a71 95 Pfam PF00708 Acylphosphatase 9 93 4.4E-26 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 trd_0812 bc8f057e808c95bf1cdd42cc68cf7a71 95 Gene3D G3DSA:3.30.70.100 1 95 1.5E-29 T 13-10-2018 trd_0812 bc8f057e808c95bf1cdd42cc68cf7a71 95 SUPERFAMILY SSF54975 2 94 1.59E-28 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 trd_0812 bc8f057e808c95bf1cdd42cc68cf7a71 95 ProSitePatterns PS00150 Acylphosphatase signature 1. 12 22 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 trd_0340 83f223915159c81becfc68a98e360599 65 Pfam PF09818 Predicted ATPase of the ABC class 6 62 2.3E-13 T 13-10-2018 IPR019195 ABC transporter, ATPase, putative trd_0018 43d86085c276e7c7c3d0320830f5810b 355 TIGRFAM TIGR02585 cas_Cst2_DevR: CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP 18 342 7.6E-48 T 13-10-2018 IPR013414 CRISPR-associated protein Cas7, subtype I-B/Tneap trd_0018 43d86085c276e7c7c3d0320830f5810b 355 Pfam PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 45 254 1.3E-9 T 13-10-2018 IPR010154 CRISPR-associated protein Cas7/Cst2/DevR trd_0018 43d86085c276e7c7c3d0320830f5810b 355 TIGRFAM TIGR01875 cas_MJ0381: CRISPR-associated autoregulator DevR family 22 256 2.8E-27 T 13-10-2018 IPR010154 CRISPR-associated protein Cas7/Cst2/DevR trd_1369 7c3c8fda70cff239c305877f5ec9a652 254 SUPERFAMILY SSF56281 4 253 4.85E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1369 7c3c8fda70cff239c305877f5ec9a652 254 Pfam PF12706 Beta-lactamase superfamily domain 46 225 2.5E-34 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1369 7c3c8fda70cff239c305877f5ec9a652 254 Gene3D G3DSA:3.60.15.10 2 254 5.1E-76 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1369 7c3c8fda70cff239c305877f5ec9a652 254 SMART SM00849 35 225 6.7E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1620 9f1569bff41413672802449ff85cca27 450 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.9E-41 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_1620 9f1569bff41413672802449ff85cca27 450 Gene3D G3DSA:3.30.470.130 1 448 5.5E-195 T 13-10-2018 trd_1620 9f1569bff41413672802449ff85cca27 450 SUPERFAMILY SSF51246 330 445 1.52E-43 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 trd_1620 9f1569bff41413672802449ff85cca27 450 SUPERFAMILY SSF56059 83 352 6.89E-74 T 13-10-2018 trd_1620 9f1569bff41413672802449ff85cca27 450 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 4.1E-40 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_1620 9f1569bff41413672802449ff85cca27 450 SMART SM00878 336 442 1.7E-62 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_1620 9f1569bff41413672802449ff85cca27 450 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 8.2E-201 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 trd_1620 9f1569bff41413672802449ff85cca27 450 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_1620 9f1569bff41413672802449ff85cca27 450 SUPERFAMILY SSF52440 1 113 2.16E-44 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily trd_1620 9f1569bff41413672802449ff85cca27 450 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 1.8E-80 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 trd_A0363 1c102d0c415d9b17b1066624aacca0c6 426 Gene3D G3DSA:1.20.1250.20 24 212 4.1E-20 T 13-10-2018 trd_A0363 1c102d0c415d9b17b1066624aacca0c6 426 Pfam PF05977 Transmembrane secretion effector 24 418 5.3E-50 T 13-10-2018 IPR010290 Transmembrane secretion effector trd_A0363 1c102d0c415d9b17b1066624aacca0c6 426 Gene3D G3DSA:1.20.1250.20 223 412 5.0E-14 T 13-10-2018 trd_A0363 1c102d0c415d9b17b1066624aacca0c6 426 SUPERFAMILY SSF103473 24 412 1.96E-45 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0318 b835ce49fd5aa31be21eb4f412c8691c 282 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 12 246 2.1E-45 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 trd_A0492 0bb6468df7ff4526a53dc9e2c54dd42f 456 SUPERFAMILY SSF50969 95 436 7.46E-7 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like trd_A0492 0bb6468df7ff4526a53dc9e2c54dd42f 456 Gene3D G3DSA:2.130.10.10 181 438 6.4E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1068 90be0eca782804e8657b20c3f692c928 321 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 5 316 2.5E-104 T 13-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 trd_1068 90be0eca782804e8657b20c3f692c928 321 Gene3D G3DSA:3.20.20.140 2 321 3.9E-114 T 13-10-2018 trd_1068 90be0eca782804e8657b20c3f692c928 321 SUPERFAMILY SSF51556 5 319 6.65E-90 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_1397 a7a1aca2ad1592a7eb7a0103c3f90404 478 Gene3D G3DSA:3.40.50.2300 233 449 1.6E-118 T 13-10-2018 trd_1397 a7a1aca2ad1592a7eb7a0103c3f90404 478 SUPERFAMILY SSF53822 113 460 1.5E-95 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_1397 a7a1aca2ad1592a7eb7a0103c3f90404 478 Pfam PF13458 Periplasmic binding protein 113 455 1.3E-81 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_1397 a7a1aca2ad1592a7eb7a0103c3f90404 478 Gene3D G3DSA:3.40.50.2300 114 447 1.6E-118 T 13-10-2018 trd_1396 615524b15032518607fec462d40c3c4f 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 120 1.7E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_1396 615524b15032518607fec462d40c3c4f 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 153 271 6.6E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_1396 615524b15032518607fec462d40c3c4f 326 SUPERFAMILY SSF54593 10 272 1.43E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1396 615524b15032518607fec462d40c3c4f 326 Gene3D G3DSA:3.10.180.10 9 143 2.1E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1396 615524b15032518607fec462d40c3c4f 326 Gene3D G3DSA:3.10.180.10 152 324 7.1E-42 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1396 615524b15032518607fec462d40c3c4f 326 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 249 270 - T 13-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 SMART SM00859 64 177 9.3E-12 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 SUPERFAMILY SSF51735 62 209 2.78E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1393 809ddce3a054038e241b4a821cc3ef73 364 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 364 165.144 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 63 356 3.0E-137 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 Gene3D G3DSA:3.30.360.10 185 331 1.5E-120 T 13-10-2018 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 64 171 1.3E-12 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 SUPERFAMILY SSF55347 185 331 7.19E-59 T 13-10-2018 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 185 331 2.5E-60 T 13-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 trd_1393 809ddce3a054038e241b4a821cc3ef73 364 Gene3D G3DSA:3.40.50.720 64 349 1.5E-120 T 13-10-2018 trd_1664 607b2261a492480917bd765567ceb2dd 281 Pfam PF04321 RmlD substrate binding domain 3 278 2.2E-93 T 13-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 trd_1664 607b2261a492480917bd765567ceb2dd 281 Gene3D G3DSA:3.40.50.720 4 265 3.6E-100 T 13-10-2018 trd_1664 607b2261a492480917bd765567ceb2dd 281 SUPERFAMILY SSF51735 3 277 2.61E-90 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1664 607b2261a492480917bd765567ceb2dd 281 Gene3D G3DSA:3.90.25.10 159 271 3.6E-100 T 13-10-2018 trd_1664 607b2261a492480917bd765567ceb2dd 281 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 276 5.2E-93 T 13-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 trd_1607 185abe758bf8fae854a17755b3bb87ca 325 Gene3D G3DSA:3.30.420.40 5 309 2.4E-94 T 13-10-2018 trd_1607 185abe758bf8fae854a17755b3bb87ca 325 SUPERFAMILY SSF53067 3 314 1.95E-63 T 13-10-2018 trd_1607 185abe758bf8fae854a17755b3bb87ca 325 Gene3D G3DSA:3.30.420.40 127 297 2.4E-94 T 13-10-2018 trd_1607 185abe758bf8fae854a17755b3bb87ca 325 ProSitePatterns PS01125 ROK family signature. 136 163 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 trd_1607 185abe758bf8fae854a17755b3bb87ca 325 Pfam PF00480 ROK family 5 309 2.2E-64 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 trd_1594 155a48bf5b0c8a0a3c839e7e0e41553b 382 Pfam PF13579 Glycosyl transferase 4-like domain 17 170 8.9E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_1594 155a48bf5b0c8a0a3c839e7e0e41553b 382 Gene3D G3DSA:3.40.50.2000 171 355 7.5E-53 T 13-10-2018 trd_1594 155a48bf5b0c8a0a3c839e7e0e41553b 382 Pfam PF13692 Glycosyl transferases group 1 195 340 1.3E-14 T 13-10-2018 trd_1594 155a48bf5b0c8a0a3c839e7e0e41553b 382 Gene3D G3DSA:3.40.50.2000 8 371 7.5E-53 T 13-10-2018 trd_1594 155a48bf5b0c8a0a3c839e7e0e41553b 382 SUPERFAMILY SSF53756 5 372 2.16E-50 T 13-10-2018 trd_0179 a2e1b2ad9c6e91ba45179449844ebd48 319 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 1.0E-16 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_0179 a2e1b2ad9c6e91ba45179449844ebd48 319 PRINTS PR01270 Histone deacetylase superfamily signature 123 146 1.0E-16 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_0179 a2e1b2ad9c6e91ba45179449844ebd48 319 PRINTS PR01270 Histone deacetylase superfamily signature 241 251 1.0E-16 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_0179 a2e1b2ad9c6e91ba45179449844ebd48 319 Pfam PF00850 Histone deacetylase domain 22 310 2.3E-90 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_0179 a2e1b2ad9c6e91ba45179449844ebd48 319 Gene3D G3DSA:3.40.800.20 2 318 3.2E-126 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 trd_0179 a2e1b2ad9c6e91ba45179449844ebd48 319 SUPERFAMILY SSF52768 5 311 1.34E-113 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 9 848 4.8E-222 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 387 402 3.7E-17 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 223 246 3.7E-17 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 43 54 3.7E-17 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 515 528 3.7E-17 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 Pfam PF08264 Anticodon-binding domain of tRNA 682 833 2.7E-33 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:1.10.730.10 636 826 2.5E-58 T 13-10-2018 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 633 5.9E-137 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF50677 202 389 1.15E-44 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF52374 9 644 2.68E-98 T 13-10-2018 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF47323 649 893 1.53E-62 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:3.40.50.620 16 621 6.3E-203 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1093 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:3.90.740.10 199 393 6.3E-203 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 trd_0575 84115b6b29e9fa4b97768af2014316d4 283 Pfam PF11392 Protein of unknown function (DUF2877) 165 274 1.2E-23 T 13-10-2018 IPR021530 Protein of unknown function DUF2877 trd_A0078 0ad3b9198dca7758ce0b1001212998df 281 PIRSF PIRSF034452 3 279 2.3E-143 T 13-10-2018 IPR009215 TIM-barrel domain, IGPS-like trd_A0078 0ad3b9198dca7758ce0b1001212998df 281 SUPERFAMILY SSF51621 5 199 7.85E-87 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_A0078 0ad3b9198dca7758ce0b1001212998df 281 Gene3D G3DSA:3.20.20.70 2 254 5.6E-124 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0078 0ad3b9198dca7758ce0b1001212998df 281 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 11 275 1.1E-136 T 13-10-2018 IPR009215 TIM-barrel domain, IGPS-like trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 Gene3D G3DSA:3.40.1030.10 72 344 2.3E-113 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 64 1.9E-17 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 Pfam PF00591 Glycosyl transferase family, a/b domain 74 328 3.8E-100 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 SUPERFAMILY SSF52418 74 340 2.09E-97 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 SUPERFAMILY SSF47648 2 68 8.63E-18 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 Gene3D G3DSA:1.20.970.10 4 68 3.0E-22 T 13-10-2018 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 4 337 39.721 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 trd_0104 387a1754ae252d73c9c382d19f3d6e94 348 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 6 334 1.0E-127 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 SUPERFAMILY SSF56784 1068 1445 4.71E-54 T 13-10-2018 IPR036412 HAD-like superfamily trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1070 1084 1.2E-34 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1240 1251 1.2E-34 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1341 1360 1.2E-34 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1364 1376 1.2E-34 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 915 929 1.2E-34 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1262 1272 1.2E-34 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Pfam PF00689 Cation transporting ATPase, C-terminus 1424 1576 2.0E-13 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:1.20.1110.10 808 1066 9.3E-76 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1341 1357 7.7E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1204 1222 7.7E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1372 1397 7.7E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:3.40.50.1000 1248 1385 4.2E-99 T 13-10-2018 IPR023214 HAD superfamily trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:3.40.50.1000 1067 1079 9.3E-76 T 13-10-2018 IPR023214 HAD superfamily trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Pfam PF00122 E1-E2 ATPase 865 1050 8.8E-47 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:2.70.150.10 778 973 9.3E-76 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 SMART SM00831 761 830 5.0E-4 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:3.40.1110.10 1080 1092 9.3E-76 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:3.40.1110.10 1167 1247 4.2E-99 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 SUPERFAMILY SSF81653 868 968 8.11E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Gene3D G3DSA:1.20.1110.10 1386 1511 4.2E-99 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 Pfam PF00702 haloacid dehalogenase-like hydrolase 1068 1355 6.6E-25 T 13-10-2018 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 837 1089 1.1E-33 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 1311 1418 3.4E-26 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 SUPERFAMILY SSF81660 1077 1244 5.56E-18 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 SUPERFAMILY SSF81665 766 1579 3.66E-52 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 trd_A0479 885f63c16b0dfe1da26d8ba138035bd6 1607 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 1072 1078 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 trd_A0455 40b7937ed9a8bc76e874e71eca70e819 290 Pfam PF01226 Formate/nitrite transporter 39 285 2.7E-64 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 trd_A0455 40b7937ed9a8bc76e874e71eca70e819 290 Gene3D G3DSA:1.20.1080.10 37 290 3.4E-67 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 trd_A0358 cab872fff9420853f88ecb346a047f90 710 Gene3D G3DSA:3.30.420.40 465 710 4.5E-94 T 13-10-2018 trd_A0358 cab872fff9420853f88ecb346a047f90 710 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 210 707 1.3E-219 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 trd_A0358 cab872fff9420853f88ecb346a047f90 710 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 471 661 1.1E-65 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 trd_A0358 cab872fff9420853f88ecb346a047f90 710 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 211 462 8.0E-77 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 trd_A0358 cab872fff9420853f88ecb346a047f90 710 SUPERFAMILY SSF53067 211 463 1.3E-90 T 13-10-2018 trd_A0358 cab872fff9420853f88ecb346a047f90 710 Hamap MF_00186 Glycerol kinase [glpK]. 208 708 55.229 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 trd_A0358 cab872fff9420853f88ecb346a047f90 710 Gene3D G3DSA:3.30.420.40 206 463 1.8E-104 T 13-10-2018 trd_A0358 cab872fff9420853f88ecb346a047f90 710 SUPERFAMILY SSF53067 466 708 3.74E-85 T 13-10-2018 trd_A0358 cab872fff9420853f88ecb346a047f90 710 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 573 593 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 trd_0026 130c6fd472ef223f2ffe5431121b8ff4 300 Gene3D G3DSA:3.20.20.70 7 300 7.1E-148 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0026 130c6fd472ef223f2ffe5431121b8ff4 300 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 16 300 2.8E-146 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0026 130c6fd472ef223f2ffe5431121b8ff4 300 Pfam PF01680 SOR/SNZ family 13 218 3.3E-107 T 13-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0026 130c6fd472ef223f2ffe5431121b8ff4 300 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 10 300 52.263 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0026 130c6fd472ef223f2ffe5431121b8ff4 300 SUPERFAMILY SSF51366 24 274 1.84E-66 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0026 130c6fd472ef223f2ffe5431121b8ff4 300 PIRSF PIRSF029271 1 300 1.3E-150 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 Gene3D G3DSA:1.10.8.540 500 588 6.2E-26 T 13-10-2018 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PIRSF PIRSF005419 11 691 2.6E-267 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 Gene3D G3DSA:3.40.30.60 356 499 2.2E-57 T 13-10-2018 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 13-10-2018 IPR025505 FHIPEP conserved site trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 25 689 3.5E-265 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 Gene3D G3DSA:1.10.490.80 591 689 7.9E-15 T 13-10-2018 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 80 99 8.6E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 8.6E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 8.6E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 8.6E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 43 56 8.6E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 8.6E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0038 09bc4190a1e361eaf2a45e4eacac4e8b 691 Pfam PF00771 FHIPEP family 36 681 4.6E-269 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 trd_A0527 dabbcc392f57b994bf042491373c554d 357 SUPERFAMILY SSF52540 76 221 1.59E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0527 dabbcc392f57b994bf042491373c554d 357 Pfam PF00154 recA bacterial DNA recombination protein 82 191 7.0E-25 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_A0527 dabbcc392f57b994bf042491373c554d 357 Gene3D G3DSA:3.40.50.300 73 285 3.2E-26 T 13-10-2018 trd_A0527 dabbcc392f57b994bf042491373c554d 357 PRINTS PR00142 RecA protein signature 315 332 3.2E-8 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_A0527 dabbcc392f57b994bf042491373c554d 357 PRINTS PR00142 RecA protein signature 169 198 3.2E-8 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_A0527 dabbcc392f57b994bf042491373c554d 357 PRINTS PR00142 RecA protein signature 135 164 3.2E-8 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 trd_1748 a2bda13dc6a6d24c5a838f8ba653d6d3 226 Pfam PF00719 Inorganic pyrophosphatase 85 208 3.2E-22 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 trd_1748 a2bda13dc6a6d24c5a838f8ba653d6d3 226 Gene3D G3DSA:3.90.80.10 73 226 1.1E-31 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 trd_1748 a2bda13dc6a6d24c5a838f8ba653d6d3 226 SUPERFAMILY SSF50324 65 223 4.58E-29 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 trd_A0053 f4280a6ff9ef3acd7b3bb9adc807f7f0 223 Gene3D G3DSA:1.20.120.450 102 223 2.4E-6 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_A0053 f4280a6ff9ef3acd7b3bb9adc807f7f0 223 SUPERFAMILY SSF143100 10 64 7.85E-10 T 13-10-2018 IPR035069 TTHA1013/TTHA0281-like trd_A0053 f4280a6ff9ef3acd7b3bb9adc807f7f0 223 Gene3D G3DSA:3.30.160.250 4 78 2.6E-7 T 13-10-2018 trd_A0053 f4280a6ff9ef3acd7b3bb9adc807f7f0 223 SUPERFAMILY SSF109854 105 221 8.09E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_0446 2d206270d406ce03a081836977386de9 325 Pfam PF14257 Domain of unknown function (DUF4349) 85 300 7.2E-49 T 13-10-2018 IPR025645 Domain of unknown function DUF4349 trd_0357 dbff43331c8f8db4128225d6ad30416f 270 PIRSF PIRSF006779 6 268 6.0E-69 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase trd_0357 dbff43331c8f8db4128225d6ad30416f 270 Gene3D G3DSA:3.40.50.10790 90 169 6.8E-23 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal trd_0357 dbff43331c8f8db4128225d6ad30416f 270 Gene3D G3DSA:3.40.50.10790 2 89 2.9E-33 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal trd_0357 dbff43331c8f8db4128225d6ad30416f 270 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 11 263 5.0E-77 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase trd_0357 dbff43331c8f8db4128225d6ad30416f 270 Gene3D G3DSA:2.40.30.90 173 266 2.4E-21 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal trd_0357 dbff43331c8f8db4128225d6ad30416f 270 SUPERFAMILY SSF102522 9 168 4.32E-54 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal trd_0357 dbff43331c8f8db4128225d6ad30416f 270 SUPERFAMILY SSF101852 173 265 1.28E-19 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal trd_1732 c35c0701f30068d57a04b562e019efd2 167 Pfam PF04008 Adenosine specific kinase 8 161 6.6E-72 T 13-10-2018 IPR007153 Adenosine specific kinase trd_1732 c35c0701f30068d57a04b562e019efd2 167 SUPERFAMILY SSF103165 3 162 4.45E-68 T 13-10-2018 IPR036902 Ta1353-like superfamily trd_1732 c35c0701f30068d57a04b562e019efd2 167 Gene3D G3DSA:3.40.1520.10 1 162 5.3E-71 T 13-10-2018 IPR036902 Ta1353-like superfamily trd_1926 f18804215a48e9a2b1cbe1d3c3395935 235 SUPERFAMILY SSF63848 127 231 1.57E-30 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 trd_1926 f18804215a48e9a2b1cbe1d3c3395935 235 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 10 231 20.45 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 trd_1926 f18804215a48e9a2b1cbe1d3c3395935 235 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 9 93 3.5E-5 T 13-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 trd_1926 f18804215a48e9a2b1cbe1d3c3395935 235 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 129 228 2.9E-29 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 trd_1926 f18804215a48e9a2b1cbe1d3c3395935 235 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 13 229 3.8E-32 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 trd_1926 f18804215a48e9a2b1cbe1d3c3395935 235 Gene3D G3DSA:2.160.20.70 123 235 7.4E-37 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 trd_1285 68d6816535c826c9634f3db248c13b1f 333 Pfam PF00535 Glycosyl transferase family 2 28 186 1.7E-30 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_1285 68d6816535c826c9634f3db248c13b1f 333 Gene3D G3DSA:3.90.550.10 6 248 2.7E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1285 68d6816535c826c9634f3db248c13b1f 333 SUPERFAMILY SSF53448 16 270 5.0E-53 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0711 0cb43339af893a4133bc37d23161effb 662 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 18 654 52.904 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 trd_0711 0cb43339af893a4133bc37d23161effb 662 Pfam PF13193 AMP-binding enzyme C-terminal domain 542 620 3.0E-28 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_0711 0cb43339af893a4133bc37d23161effb 662 SUPERFAMILY SSF56801 39 651 1.1E-180 T 13-10-2018 trd_0711 0cb43339af893a4133bc37d23161effb 662 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 40 90 2.4E-20 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 trd_0711 0cb43339af893a4133bc37d23161effb 662 ProSitePatterns PS00455 Putative AMP-binding domain signature. 271 282 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_0711 0cb43339af893a4133bc37d23161effb 662 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 39 652 2.5E-297 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 trd_0711 0cb43339af893a4133bc37d23161effb 662 Pfam PF00501 AMP-binding enzyme 99 533 1.1E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_0711 0cb43339af893a4133bc37d23161effb 662 Gene3D G3DSA:3.40.50.12780 65 526 2.4E-113 T 13-10-2018 trd_0711 0cb43339af893a4133bc37d23161effb 662 Gene3D G3DSA:3.30.300.30 529 657 3.5E-29 T 13-10-2018 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 26 583 2.7E-210 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 SUPERFAMILY SSF55681 194 479 1.27E-85 T 13-10-2018 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.980.10 24 172 4.7E-64 T 13-10-2018 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 275 481 1.5E-34 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.930.10 174 484 6.5E-121 T 13-10-2018 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 SUPERFAMILY SSF55186 23 192 3.27E-63 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.40.50.800 485 595 2.0E-33 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.54.20 84 138 4.7E-64 T 13-10-2018 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 SUPERFAMILY SSF52954 483 587 3.02E-31 T 13-10-2018 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Pfam PF03129 Anticodon binding domain 494 583 2.3E-24 T 13-10-2018 IPR004154 Anticodon-binding trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 20 587 33.592 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 SMART SM00863 121 170 3.8E-23 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 417 445 1.9E-50 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 487 499 1.9E-50 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 314 337 1.9E-50 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 460 473 1.9E-50 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 281 309 1.9E-50 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 trd_1067 28d540550ad2546fb0e51e1d32f7caff 596 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 122 170 9.0E-13 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 417 481 5.4E-13 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 Gene3D G3DSA:3.90.100.10 406 490 1.4E-19 T 13-10-2018 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 223 237 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 Gene3D G3DSA:3.40.640.10 8 285 5.0E-79 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 SUPERFAMILY SSF55904 344 493 3.27E-34 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 9 316 3.7E-52 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 trd_1581 dcc5287ce6e6de58aeac1affe23f8ab7 495 SUPERFAMILY SSF53383 9 384 3.16E-77 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1644 1b5a1ff00d587e484d2b48723e634fce 295 SUPERFAMILY SSF56563 11 291 6.41E-21 T 13-10-2018 trd_1644 1b5a1ff00d587e484d2b48723e634fce 295 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 18 230 1.7E-8 T 13-10-2018 IPR024455 Phage capsid trd_1644 1b5a1ff00d587e484d2b48723e634fce 295 Pfam PF05065 Phage capsid family 18 289 1.8E-11 T 13-10-2018 IPR024455 Phage capsid trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 TIGRFAM TIGR01499 folC: bifunctional protein FolC 35 437 6.7E-120 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 Gene3D G3DSA:3.90.190.20 307 442 2.7E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 PIRSF PIRSF001563 25 444 8.9E-132 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 155 170 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 55 78 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 SUPERFAMILY SSF53244 305 445 6.56E-29 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 Gene3D G3DSA:3.40.1190.10 25 306 4.6E-98 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 305 379 4.1E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 Pfam PF08245 Mur ligase middle domain 57 280 1.4E-12 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_A0255 f38754c56b43bdd01a459b968d811bf9 454 SUPERFAMILY SSF53623 27 305 8.36E-89 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0735 54ef1ee3c26a58b75c586cbea065dec7 192 Gene3D G3DSA:1.20.120.680 3 191 2.0E-20 T 13-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 trd_0735 54ef1ee3c26a58b75c586cbea065dec7 192 SUPERFAMILY SSF101262 9 171 8.24E-18 T 13-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 trd_0735 54ef1ee3c26a58b75c586cbea065dec7 192 Pfam PF04961 Formiminotransferase-cyclodeaminase 13 170 1.4E-18 T 13-10-2018 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 trd_1307 891025cc04d66d41b9616c60a70aa288 294 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 11 277 24.722 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 trd_1307 891025cc04d66d41b9616c60a70aa288 294 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 12 263 2.2E-46 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 trd_1307 891025cc04d66d41b9616c60a70aa288 294 Pfam PF00288 GHMP kinases N terminal domain 87 139 1.2E-4 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 trd_1307 891025cc04d66d41b9616c60a70aa288 294 Gene3D G3DSA:3.30.70.890 159 279 4.9E-11 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily trd_1307 891025cc04d66d41b9616c60a70aa288 294 SUPERFAMILY SSF55060 161 274 1.77E-7 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily trd_1307 891025cc04d66d41b9616c60a70aa288 294 Gene3D G3DSA:3.30.230.10 3 156 3.7E-41 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1307 891025cc04d66d41b9616c60a70aa288 294 SUPERFAMILY SSF54211 10 156 1.75E-27 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1307 891025cc04d66d41b9616c60a70aa288 294 PIRSF PIRSF010376 10 288 5.8E-54 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 trd_A0201 c497bfb95846ea65f727d23ad97e4153 328 SUPERFAMILY SSF160240 225 292 3.79E-9 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 trd_A0201 c497bfb95846ea65f727d23ad97e4153 328 Gene3D G3DSA:1.20.1510.10 18 215 3.8E-45 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily trd_A0201 c497bfb95846ea65f727d23ad97e4153 328 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 19 293 7.7E-89 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 trd_A0201 c497bfb95846ea65f727d23ad97e4153 328 SUPERFAMILY SSF161111 16 216 5.75E-59 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily trd_A0201 c497bfb95846ea65f727d23ad97e4153 328 Pfam PF01545 Cation efflux family 25 215 5.1E-48 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 SUPERFAMILY SSF56801 3 486 1.11E-145 T 13-10-2018 trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 Gene3D G3DSA:3.40.50.12780 2 387 6.8E-118 T 13-10-2018 trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 28 479 4.1E-122 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 Pfam PF00501 AMP-binding enzyme 8 390 9.4E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 Hamap MF_00731 2-succinylbenzoate--CoA ligase [menE]. 3 483 42.172 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 ProSitePatterns PS00455 Putative AMP-binding domain signature. 148 159 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 Pfam PF13193 AMP-binding enzyme C-terminal domain 399 474 3.1E-25 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_A0308 1e938e8074edc2ff044e546ed0681dc7 487 Gene3D G3DSA:3.30.300.310 388 487 1.1E-35 T 13-10-2018 trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 Pfam PF00364 Biotin-requiring enzyme 4 77 3.5E-11 T 13-10-2018 IPR000089 Biotin/lipoyl attachment trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 25 39 9.9E-9 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 8 21 9.9E-9 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 40 53 9.9E-9 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 Gene3D G3DSA:2.40.50.100 1 78 4.1E-21 T 13-10-2018 trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 SUPERFAMILY SSF51230 4 78 1.2E-16 T 13-10-2018 IPR011053 Single hybrid motif trd_A0771 3245ac030e9c343bb32ca088517ec38d 82 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 35 52 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 trd_0516 b52bb3a42bdb7425727a18af01c2cde2 208 Gene3D G3DSA:3.40.50.150 2 195 8.0E-33 T 13-10-2018 trd_0516 b52bb3a42bdb7425727a18af01c2cde2 208 SUPERFAMILY SSF53335 11 193 3.28E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0516 b52bb3a42bdb7425727a18af01c2cde2 208 Pfam PF08241 Methyltransferase domain 49 143 1.7E-21 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 trd_A0444 f85098a332a588d99fd9163f604c625d 653 Pfam PF05787 Bacterial protein of unknown function (DUF839) 82 617 4.8E-184 T 13-10-2018 IPR008557 Protein of unknown function DUF839 trd_A0444 f85098a332a588d99fd9163f604c625d 653 SUPERFAMILY SSF63829 324 617 9.16E-11 T 13-10-2018 trd_0381 66fa4ab6615d28fed3198c797f47d171 275 SMART SM00382 46 252 0.0011 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0381 66fa4ab6615d28fed3198c797f47d171 275 SUPERFAMILY SSF52540 20 253 1.86E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0381 66fa4ab6615d28fed3198c797f47d171 275 Gene3D G3DSA:3.40.50.300 22 270 3.4E-55 T 13-10-2018 trd_0381 66fa4ab6615d28fed3198c797f47d171 275 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 24 266 2.6E-106 T 13-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 trd_0381 66fa4ab6615d28fed3198c797f47d171 275 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0381 66fa4ab6615d28fed3198c797f47d171 275 Pfam PF00005 ABC transporter 37 194 2.9E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0779 f2da5caea25377960080b362bdd8e007 360 Gene3D G3DSA:3.30.470.20 191 340 7.0E-40 T 13-10-2018 trd_A0779 f2da5caea25377960080b362bdd8e007 360 Gene3D G3DSA:3.30.1490.20 1 189 8.8E-58 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 trd_A0779 f2da5caea25377960080b362bdd8e007 360 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 19 332 3.1E-91 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 trd_A0779 f2da5caea25377960080b362bdd8e007 360 SUPERFAMILY SSF56059 4 341 1.02E-84 T 13-10-2018 trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 5 193 37.165 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 SUPERFAMILY SSF52317 3 193 2.17E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 Gene3D G3DSA:3.40.50.880 1 201 2.0E-72 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 ProSitePatterns PS01236 PdxT/SNO family family signature. 42 52 - T 13-10-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 5 191 7.6E-64 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 Pfam PF01174 SNO glutamine amidotransferase family 7 193 4.0E-55 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0025 f085cc2a6a04174c71f77e3d328f061a 202 PIRSF PIRSF005639 1 198 8.7E-72 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 trd_0011 664529ba7400e51527dbf4837ecdffd5 179 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 9 171 6.2E-59 T 13-10-2018 IPR006286 Deglycase PfpI trd_0011 664529ba7400e51527dbf4837ecdffd5 179 Pfam PF01965 DJ-1/PfpI family 7 169 6.2E-56 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 trd_0011 664529ba7400e51527dbf4837ecdffd5 179 SUPERFAMILY SSF52317 6 171 1.36E-50 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0011 664529ba7400e51527dbf4837ecdffd5 179 Gene3D G3DSA:3.40.50.880 2 175 6.9E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_0078 5e21761fbfb3e19f912bc5d75f2496da 287 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 34 273 4.3E-67 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related trd_1299 addb16b14414e622290e4f10109fb493 390 SUPERFAMILY SSF53756 101 374 1.15E-33 T 13-10-2018 trd_1299 addb16b14414e622290e4f10109fb493 390 Gene3D G3DSA:3.40.50.2000 33 193 5.3E-8 T 13-10-2018 trd_1299 addb16b14414e622290e4f10109fb493 390 Pfam PF13692 Glycosyl transferases group 1 203 344 2.6E-17 T 13-10-2018 trd_1299 addb16b14414e622290e4f10109fb493 390 Gene3D G3DSA:3.40.50.2000 194 362 6.7E-25 T 13-10-2018 trd_1097 cf005696f8faee04b829ac34de8e506a 97 SUPERFAMILY SSF54909 1 66 9.97E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_1097 cf005696f8faee04b829ac34de8e506a 97 Gene3D G3DSA:3.30.70.100 5 94 1.2E-12 T 13-10-2018 trd_1097 cf005696f8faee04b829ac34de8e506a 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 67 2.1E-13 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain trd_1477 8968e3456a5527ae4dd4014e034bd77b 356 SUPERFAMILY SSF57997 51 207 7.85E-13 T 13-10-2018 trd_1477 8968e3456a5527ae4dd4014e034bd77b 356 Gene3D G3DSA:1.20.5.340 140 218 4.5E-10 T 13-10-2018 trd_1477 8968e3456a5527ae4dd4014e034bd77b 356 Gene3D G3DSA:3.90.20.10 38 132 7.1E-8 T 13-10-2018 trd_1477 8968e3456a5527ae4dd4014e034bd77b 356 Pfam PF13166 AAA domain 51 201 1.0E-10 T 13-10-2018 IPR026866 Protein CR006, P-loop domain trd_A0889 8cb471b0b9e9a62cb91d1f7907c7be20 503 SUPERFAMILY SSF53474 169 498 5.6E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0889 8cb471b0b9e9a62cb91d1f7907c7be20 503 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 192 391 1.1E-9 T 13-10-2018 IPR010520 UPF0255 family trd_A0889 8cb471b0b9e9a62cb91d1f7907c7be20 503 Gene3D G3DSA:3.40.50.1820 162 501 3.7E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 SUPERFAMILY SSF88946 2 108 2.15E-30 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 77 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 Pfam PF08281 Sigma-70, region 4 119 172 1.5E-19 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 Gene3D G3DSA:1.10.1740.10 1 109 7.5E-30 T 13-10-2018 trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 SUPERFAMILY SSF88659 115 177 1.5E-18 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 Gene3D G3DSA:1.10.10.10 118 186 3.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 Pfam PF04542 Sigma-70 region 2 25 91 1.9E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_1752 b60dffcfeb9d995358f96cb9a1b38d6c 207 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 175 4.4E-31 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1725 1c3d0b68502494e2a84a7c6d7e5a7353 377 SUPERFAMILY SSF88723 180 304 6.17E-18 T 13-10-2018 IPR029060 PIN-like domain superfamily trd_1725 1c3d0b68502494e2a84a7c6d7e5a7353 377 Gene3D G3DSA:3.40.50.1010 178 308 3.3E-31 T 13-10-2018 trd_1725 1c3d0b68502494e2a84a7c6d7e5a7353 377 SMART SM00670 179 285 1.3E-5 T 13-10-2018 IPR002716 PIN domain trd_0514 90b02502f82ab210cbfc2f8854bd0da0 141 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 101 119 - T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 trd_0514 90b02502f82ab210cbfc2f8854bd0da0 141 SUPERFAMILY SSF111038 6 139 4.84E-41 T 13-10-2018 IPR035917 YjbQ-like superfamily trd_0514 90b02502f82ab210cbfc2f8854bd0da0 141 Gene3D G3DSA:2.60.120.460 1 140 7.8E-47 T 13-10-2018 IPR035917 YjbQ-like superfamily trd_0514 90b02502f82ab210cbfc2f8854bd0da0 141 PIRSF PIRSF004681 3 140 2.7E-39 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 trd_0514 90b02502f82ab210cbfc2f8854bd0da0 141 Pfam PF01894 Uncharacterised protein family UPF0047 21 137 1.1E-36 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 trd_0514 90b02502f82ab210cbfc2f8854bd0da0 141 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 139 1.1E-34 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 trd_0912 e445cb8d93c4347bdfae0af25b8746da 349 PIRSF PIRSF016049 154 346 1.3E-64 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 trd_0912 e445cb8d93c4347bdfae0af25b8746da 349 PIRSF PIRSF016049 54 164 1.5E-19 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 trd_0912 e445cb8d93c4347bdfae0af25b8746da 349 SUPERFAMILY SSF51658 51 338 5.94E-49 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily trd_0912 e445cb8d93c4347bdfae0af25b8746da 349 Pfam PF03786 D-mannonate dehydratase (UxuA) 58 158 1.5E-20 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 trd_0912 e445cb8d93c4347bdfae0af25b8746da 349 Pfam PF03786 D-mannonate dehydratase (UxuA) 161 340 6.1E-59 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 trd_0912 e445cb8d93c4347bdfae0af25b8746da 349 Gene3D G3DSA:3.20.20.150 48 347 1.6E-106 T 13-10-2018 trd_A0534 c02344905dd5bef6459e3b18fcdec338 382 SUPERFAMILY SSF53850 76 370 3.37E-59 T 13-10-2018 trd_A0534 c02344905dd5bef6459e3b18fcdec338 382 Pfam PF13343 Bacterial extracellular solute-binding protein 124 351 1.9E-20 T 13-10-2018 trd_A0534 c02344905dd5bef6459e3b18fcdec338 382 PIRSF PIRSF002825 14 382 1.6E-89 T 13-10-2018 IPR026045 Ferric binding protein trd_A0534 c02344905dd5bef6459e3b18fcdec338 382 Gene3D G3DSA:3.40.190.10 171 364 1.6E-102 T 13-10-2018 trd_A0534 c02344905dd5bef6459e3b18fcdec338 382 Gene3D G3DSA:3.40.190.10 77 351 1.6E-102 T 13-10-2018 trd_A0833 4b6b19f2d1d3b995eb6aaf036cac0c0a 133 PIRSF PIRSF021774 3 132 3.4E-47 T 13-10-2018 IPR016796 Uncharacterised conserved protein UCP021774 trd_A0833 4b6b19f2d1d3b995eb6aaf036cac0c0a 133 Gene3D G3DSA:3.30.310.70 6 130 1.6E-51 T 13-10-2018 IPR035923 TT1751-like domain superfamily trd_A0833 4b6b19f2d1d3b995eb6aaf036cac0c0a 133 Pfam PF03625 Domain of unknown function DUF302 38 100 9.8E-28 T 13-10-2018 IPR005180 Domain of unknown function DUF302 trd_A0833 4b6b19f2d1d3b995eb6aaf036cac0c0a 133 SUPERFAMILY SSF103247 8 130 6.8E-39 T 13-10-2018 IPR035923 TT1751-like domain superfamily trd_A0031 856fea053b9ad9079a48de92882990a2 237 Gene3D G3DSA:3.30.1330.60 80 234 7.5E-49 T 13-10-2018 IPR036737 OmpA-like domain superfamily trd_A0031 856fea053b9ad9079a48de92882990a2 237 SUPERFAMILY SSF103088 112 229 1.22E-33 T 13-10-2018 IPR036737 OmpA-like domain superfamily trd_A0031 856fea053b9ad9079a48de92882990a2 237 Pfam PF00691 OmpA family 124 223 2.3E-20 T 13-10-2018 IPR006665 OmpA-like domain trd_A0031 856fea053b9ad9079a48de92882990a2 237 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 58 9.4E-23 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain trd_0916 b1fcf5a4acd66f30e0c74ab85f780171 333 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 305 1.1E-59 T 13-10-2018 IPR016040 NAD(P)-binding domain trd_0916 b1fcf5a4acd66f30e0c74ab85f780171 333 Gene3D G3DSA:3.40.50.720 4 295 1.6E-86 T 13-10-2018 trd_0916 b1fcf5a4acd66f30e0c74ab85f780171 333 Gene3D G3DSA:3.90.25.10 179 302 1.6E-86 T 13-10-2018 trd_0916 b1fcf5a4acd66f30e0c74ab85f780171 333 SUPERFAMILY SSF51735 1 312 3.38E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0856 476f96eb1ad77d37115ed91093e36380 295 Gene3D G3DSA:1.10.3730.10 180 286 1.4E-38 T 13-10-2018 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 179 283 1.4E-35 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 Gene3D G3DSA:3.40.50.720 12 179 8.2E-46 T 13-10-2018 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 20 283 25.957 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 SUPERFAMILY SSF48179 178 284 5.61E-35 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 PIRSF PIRSF000193 19 286 4.2E-73 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 SUPERFAMILY SSF51735 20 176 7.89E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0856 476f96eb1ad77d37115ed91093e36380 295 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 22 283 1.1E-77 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 trd_A0856 476f96eb1ad77d37115ed91093e36380 295 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 21 116 6.4E-19 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 PIRSF PIRSF019345 1 184 1.6E-44 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 SUPERFAMILY SSF46785 4 78 1.77E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 7 167 1.4E-32 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 Gene3D G3DSA:1.10.10.10 81 175 2.9E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 164 9.9E-46 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 Gene3D G3DSA:1.10.10.10 2 80 1.6E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1633 f7ae7ff8bfaffb3447b38f6dcb0e0b26 188 SUPERFAMILY SSF46785 83 155 4.7E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0981 8051968b88755312719cf1bc4dccb620 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 48.019 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 trd_0981 8051968b88755312719cf1bc4dccb620 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 4.5E-132 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 trd_0981 8051968b88755312719cf1bc4dccb620 275 PIRSF PIRSF002158 5 274 6.6E-97 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0981 8051968b88755312719cf1bc4dccb620 275 Gene3D G3DSA:2.30.30.30 118 195 3.3E-33 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 trd_0981 8051968b88755312719cf1bc4dccb620 275 SMART SM01382 124 252 1.3E-84 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 trd_0981 8051968b88755312719cf1bc4dccb620 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.5E-31 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0981 8051968b88755312719cf1bc4dccb620 275 SMART SM01383 42 118 1.3E-45 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0981 8051968b88755312719cf1bc4dccb620 275 Gene3D G3DSA:4.10.950.10 196 274 1.6E-31 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0981 8051968b88755312719cf1bc4dccb620 275 SUPERFAMILY SSF50104 126 272 5.3E-61 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily trd_0981 8051968b88755312719cf1bc4dccb620 275 SUPERFAMILY SSF50249 3 124 6.85E-52 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0981 8051968b88755312719cf1bc4dccb620 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 3.8E-54 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 trd_0981 8051968b88755312719cf1bc4dccb620 275 Gene3D G3DSA:2.40.50.140 1 114 1.7E-47 T 13-10-2018 trd_A0675 da5f23c45e9c8b8bc61ecbc118e43e5f 397 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 394 9.7E-108 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_A0675 da5f23c45e9c8b8bc61ecbc118e43e5f 397 PIRSF PIRSF001434 1 397 5.0E-124 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_A0675 da5f23c45e9c8b8bc61ecbc118e43e5f 397 SUPERFAMILY SSF53383 30 395 6.86E-100 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0675 da5f23c45e9c8b8bc61ecbc118e43e5f 397 Gene3D G3DSA:3.40.640.10 7 258 2.1E-77 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0675 da5f23c45e9c8b8bc61ecbc118e43e5f 397 Gene3D G3DSA:3.90.1150.10 263 397 8.5E-46 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0563 7be80ab458353f5593d7046261433c9a 368 SMART SM00746 322 360 5.5E-9 T 13-10-2018 IPR011017 TRASH domain trd_A0563 7be80ab458353f5593d7046261433c9a 368 Pfam PF02625 XdhC and CoxI family 55 120 3.2E-17 T 13-10-2018 IPR003777 XdhC- CoxI trd_A0563 7be80ab458353f5593d7046261433c9a 368 Gene3D G3DSA:1.10.620.20 298 368 6.7E-10 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 trd_A0563 7be80ab458353f5593d7046261433c9a 368 Pfam PF04945 YHS domain 321 366 3.4E-17 T 13-10-2018 IPR007029 YHS domain trd_A0563 7be80ab458353f5593d7046261433c9a 368 SUPERFAMILY SSF47240 322 363 6.76E-10 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_A0563 7be80ab458353f5593d7046261433c9a 368 Pfam PF13478 XdhC Rossmann domain 160 293 2.8E-23 T 13-10-2018 IPR027051 XdhC Rossmann domain trd_A0563 7be80ab458353f5593d7046261433c9a 368 Gene3D G3DSA:3.40.50.720 159 297 1.1E-21 T 13-10-2018 trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 44 63 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 63 79 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 267 293 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 417 434 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 143 167 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 365 384 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 167 188 3.2E-27 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 Pfam PF03023 MviN-like protein 39 464 7.6E-81 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 14 473 16.363 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 PIRSF PIRSF002869 9 522 7.5E-104 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0850 a29f82d395835f06aedb5490d78cc3f9 539 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 15 510 6.0E-90 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 Gene3D G3DSA:3.40.50.300 192 503 7.1E-60 T 13-10-2018 trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 405 500 5.0E-34 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 SMART SM00382 212 395 1.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 SUPERFAMILY SSF54211 4 167 9.48E-39 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 141 9.1E-46 T 13-10-2018 trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 SUPERFAMILY SSF52540 191 502 8.18E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 Pfam PF01078 Magnesium chelatase, subunit ChlI 192 398 3.7E-92 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 292 306 6.1E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 320 333 6.1E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 344 356 6.1E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 211 226 6.1E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 5 500 8.7E-181 T 13-10-2018 IPR004482 Mg chelatase-related protein trd_A0017 d25168c03656fd917d4f9d96f65b4dfb 505 Gene3D G3DSA:3.30.230.10 4 168 2.4E-14 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_0088 40d87a5f43c5d83be24c961e4440f9f1 446 Gene3D G3DSA:3.40.50.2000 224 408 1.4E-70 T 13-10-2018 trd_0088 40d87a5f43c5d83be24c961e4440f9f1 446 Gene3D G3DSA:3.40.50.2000 68 424 1.4E-70 T 13-10-2018 trd_0088 40d87a5f43c5d83be24c961e4440f9f1 446 Pfam PF00534 Glycosyl transferases group 1 248 404 1.2E-27 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0088 40d87a5f43c5d83be24c961e4440f9f1 446 Pfam PF13439 Glycosyltransferase Family 4 69 225 1.8E-20 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_0088 40d87a5f43c5d83be24c961e4440f9f1 446 SUPERFAMILY SSF53756 67 429 1.26E-81 T 13-10-2018 trd_1592 c4f8136e285fbe15f868aa933bc52387 312 SUPERFAMILY SSF53448 5 262 5.44E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1592 c4f8136e285fbe15f868aa933bc52387 312 Gene3D G3DSA:3.90.550.10 3 241 4.3E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1592 c4f8136e285fbe15f868aa933bc52387 312 Pfam PF00535 Glycosyl transferase family 2 7 191 3.3E-22 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_1781 b0752c733a27d05e51f50cf43cb87448 185 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 12 151 5.8E-68 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1781 b0752c733a27d05e51f50cf43cb87448 185 SUPERFAMILY SSF56770 10 155 3.92E-62 T 13-10-2018 trd_1781 b0752c733a27d05e51f50cf43cb87448 185 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 38 146 8.6E-24 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1781 b0752c733a27d05e51f50cf43cb87448 185 Gene3D G3DSA:3.40.50.12280 3 172 1.2E-71 T 13-10-2018 trd_1781 b0752c733a27d05e51f50cf43cb87448 185 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 152 41.259 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1675 b816a0a61011ace79908136a11a0508c 299 Gene3D G3DSA:1.10.3720.10 20 286 1.2E-63 T 13-10-2018 IPR035906 MetI-like superfamily trd_1675 b816a0a61011ace79908136a11a0508c 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 288 5.2E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1675 b816a0a61011ace79908136a11a0508c 299 SUPERFAMILY SSF161098 25 298 2.71E-70 T 13-10-2018 IPR035906 MetI-like superfamily trd_0075 a34c02312f14f31b4de1315d21274d4e 112 SMART SM00418 25 103 9.3E-28 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0075 a34c02312f14f31b4de1315d21274d4e 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 42 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0075 a34c02312f14f31b4de1315d21274d4e 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0075 a34c02312f14f31b4de1315d21274d4e 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 76 91 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0075 a34c02312f14f31b4de1315d21274d4e 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 59 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0075 a34c02312f14f31b4de1315d21274d4e 112 Pfam PF01022 Bacterial regulatory protein, arsR family 32 79 3.0E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 trd_0075 a34c02312f14f31b4de1315d21274d4e 112 Gene3D G3DSA:1.10.10.10 11 108 1.7E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0075 a34c02312f14f31b4de1315d21274d4e 112 SUPERFAMILY SSF46785 21 106 1.57E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 SUPERFAMILY SSF51735 181 346 4.96E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 Gene3D G3DSA:3.40.50.720 192 343 2.8E-84 T 13-10-2018 trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 SUPERFAMILY SSF50129 24 214 6.24E-37 T 13-10-2018 IPR011032 GroES-like superfamily trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 86 100 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 Pfam PF00107 Zinc-binding dehydrogenase 216 350 2.3E-21 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 47 175 2.5E-22 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 SMART SM00829 32 405 0.0019 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_1942 5de86ae07a4c8a292c1f75929bd2f8a8 413 Gene3D G3DSA:3.90.180.10 34 391 2.8E-84 T 13-10-2018 trd_1762 c7095ec854085d8a169e0cdc8ca6198d 261 Gene3D G3DSA:3.90.226.10 1 201 2.1E-68 T 13-10-2018 trd_1762 c7095ec854085d8a169e0cdc8ca6198d 261 Gene3D G3DSA:1.10.12.10 203 256 1.6E-11 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal trd_1762 c7095ec854085d8a169e0cdc8ca6198d 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 258 3.2E-52 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 trd_1762 c7095ec854085d8a169e0cdc8ca6198d 261 SUPERFAMILY SSF52096 3 257 4.04E-75 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_A0050 acd0d90f6dfa13033ba0c877e50fc252 142 Gene3D G3DSA:2.30.290.10 10 142 6.0E-27 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily trd_A0050 acd0d90f6dfa13033ba0c877e50fc252 142 SUPERFAMILY SSF141457 15 140 4.05E-21 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily trd_A0050 acd0d90f6dfa13033ba0c877e50fc252 142 Pfam PF02623 FliW protein 20 139 9.3E-21 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 trd_0262 86092d5052c9e54456ec818ac31c9946 449 Pfam PF02754 Cysteine-rich domain 325 409 2.3E-16 T 13-10-2018 IPR004017 Cysteine-rich domain trd_0262 86092d5052c9e54456ec818ac31c9946 449 Pfam PF02754 Cysteine-rich domain 196 279 1.4E-16 T 13-10-2018 IPR004017 Cysteine-rich domain trd_0262 86092d5052c9e54456ec818ac31c9946 449 Gene3D G3DSA:1.10.1060.10 10 114 5.7E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0262 86092d5052c9e54456ec818ac31c9946 449 SUPERFAMILY SSF46548 18 108 6.8E-20 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0262 86092d5052c9e54456ec818ac31c9946 449 Pfam PF13183 4Fe-4S dicluster domain 24 93 1.2E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0262 86092d5052c9e54456ec818ac31c9946 449 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 79 90 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_0262 86092d5052c9e54456ec818ac31c9946 449 PIRSF PIRSF000139 14 439 3.2E-130 T 13-10-2018 trd_A0565 64ae0e1a30c89c0faed712743219c1ac 166 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 55 2.2E-4 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 trd_A0565 64ae0e1a30c89c0faed712743219c1ac 166 Pfam PF01799 [2Fe-2S] binding domain 76 148 5.9E-33 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 trd_A0565 64ae0e1a30c89c0faed712743219c1ac 166 Gene3D G3DSA:1.10.150.120 78 163 3.1E-36 T 13-10-2018 trd_A0565 64ae0e1a30c89c0faed712743219c1ac 166 SUPERFAMILY SSF54292 4 81 3.41E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_A0565 64ae0e1a30c89c0faed712743219c1ac 166 Gene3D G3DSA:3.10.20.30 1 77 4.8E-29 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_A0565 64ae0e1a30c89c0faed712743219c1ac 166 SUPERFAMILY SSF47741 87 156 1.13E-35 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily trd_A0505 2557126ee4d4c523463b8d72544b6d3f 466 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 136 230 1.0E-4 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 trd_A0505 2557126ee4d4c523463b8d72544b6d3f 466 Gene3D G3DSA:3.40.50.300 38 247 1.8E-30 T 13-10-2018 trd_A0505 2557126ee4d4c523463b8d72544b6d3f 466 SUPERFAMILY SSF52540 39 326 1.34E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1014 bed5091e4d324c600dba58a8b94bebcb 923 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 597 889 7.8E-71 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal trd_1014 bed5091e4d324c600dba58a8b94bebcb 923 SUPERFAMILY SSF55729 712 886 1.42E-10 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_1014 bed5091e4d324c600dba58a8b94bebcb 923 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 79 358 2.9E-20 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 Pfam PF01614 Bacterial transcriptional regulator 126 250 4.9E-34 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 Gene3D G3DSA:1.10.10.10 2 79 2.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 SUPERFAMILY SSF55781 73 254 5.3E-50 T 13-10-2018 trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 Pfam PF09339 IclR helix-turn-helix domain 7 57 4.0E-17 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 SMART SM00346 5 98 1.9E-15 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 Gene3D G3DSA:3.30.450.40 80 258 3.3E-57 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_A0594 270fdc49a5bd1c847c1aaea7d5a4bc1e 278 SUPERFAMILY SSF46785 5 81 1.52E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1290 df1431b1f123b0a123e571521f0a66b3 721 SUPERFAMILY SSF109604 477 658 1.0E-16 T 13-10-2018 trd_1290 df1431b1f123b0a123e571521f0a66b3 721 Gene3D G3DSA:1.10.3210.10 461 647 1.4E-19 T 13-10-2018 trd_1290 df1431b1f123b0a123e571521f0a66b3 721 Pfam PF07698 7TM receptor with intracellular HD hydrolase 274 463 1.7E-14 T 13-10-2018 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain trd_1290 df1431b1f123b0a123e571521f0a66b3 721 Pfam PF01966 HD domain 488 629 4.6E-18 T 13-10-2018 IPR006674 HD domain trd_1290 df1431b1f123b0a123e571521f0a66b3 721 SMART SM00471 484 639 4.0E-10 T 13-10-2018 IPR003607 HD/PDEase domain trd_1290 df1431b1f123b0a123e571521f0a66b3 721 TIGRFAM TIGR00277 HDIG: HDIG domain 485 583 9.3E-22 T 13-10-2018 IPR006675 HDIG domain trd_1290 df1431b1f123b0a123e571521f0a66b3 721 Pfam PF07697 7TM-HD extracellular 56 268 4.9E-49 T 13-10-2018 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain trd_1438 4c48c9c03005feba74fbc066e43c1136 511 Pfam PF00571 CBS domain 117 162 1.0E-11 T 13-10-2018 IPR000644 CBS domain trd_1438 4c48c9c03005feba74fbc066e43c1136 511 Pfam PF00571 CBS domain 171 226 3.6E-9 T 13-10-2018 IPR000644 CBS domain trd_1438 4c48c9c03005feba74fbc066e43c1136 511 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 30 509 89.542 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 30 496 5.6E-171 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 SUPERFAMILY SSF54631 115 226 3.79E-33 T 13-10-2018 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 SMART SM00116 118 166 8.6E-10 T 13-10-2018 IPR000644 CBS domain trd_1438 4c48c9c03005feba74fbc066e43c1136 511 SMART SM00116 179 227 6.5E-8 T 13-10-2018 IPR000644 CBS domain trd_1438 4c48c9c03005feba74fbc066e43c1136 511 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 30 477 6.2E-197 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 Gene3D G3DSA:3.20.20.70 21 509 9.9E-229 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 SMART SM01240 29 496 0.0 T 13-10-2018 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 315 327 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 SUPERFAMILY SSF51412 28 500 1.57E-129 T 13-10-2018 trd_1438 4c48c9c03005feba74fbc066e43c1136 511 PIRSF PIRSF000130 21 510 4.7E-217 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 trd_A0071 32b7a8009703cae8f4d52553e513eb17 98 Gene3D G3DSA:3.30.70.100 1 93 1.7E-27 T 13-10-2018 trd_A0071 32b7a8009703cae8f4d52553e513eb17 98 SUPERFAMILY SSF54909 2 92 5.7E-28 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_A0071 32b7a8009703cae8f4d52553e513eb17 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 74 7.4E-19 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain trd_0392 91a0f3be0c3712d4f50b6bc5c8167f38 402 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 398 9.0E-126 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_0392 91a0f3be0c3712d4f50b6bc5c8167f38 402 SUPERFAMILY SSF53383 30 399 7.29E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0392 91a0f3be0c3712d4f50b6bc5c8167f38 402 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 206 220 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_0392 91a0f3be0c3712d4f50b6bc5c8167f38 402 Gene3D G3DSA:3.90.1150.10 265 402 4.1E-48 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0392 91a0f3be0c3712d4f50b6bc5c8167f38 402 PIRSF PIRSF001434 2 402 1.3E-137 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 trd_0392 91a0f3be0c3712d4f50b6bc5c8167f38 402 Gene3D G3DSA:3.40.640.10 7 261 3.4E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 Gene3D G3DSA:2.40.50.140 21 100 2.4E-33 T 13-10-2018 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 22 90 1.0E-23 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 SUPERFAMILY SSF50249 22 100 1.03E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 Pfam PF00366 Ribosomal protein S17 27 92 1.2E-31 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 24 92 1.5E-32 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 ProSitePatterns PS00056 Ribosomal protein S17 signature. 73 85 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 20 97 23.624 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 PRINTS PR00973 Ribosomal protein S17 family signature 73 83 2.2E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 PRINTS PR00973 Ribosomal protein S17 family signature 41 64 2.2E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0975 d3c7b4200e874d62addd7b01f4629d4b 119 PRINTS PR00973 Ribosomal protein S17 family signature 83 90 2.2E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0225 1f7de86aa601eb0545ac7cc2eda97b23 86 Pfam PF04226 Transglycosylase associated protein 38 86 3.3E-11 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 trd_0433 3c619584ea42eb639e1bd5952a833edf 243 Pfam PF01138 3' exoribonuclease family, domain 1 16 143 6.0E-19 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0433 3c619584ea42eb639e1bd5952a833edf 243 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 10 240 2.7E-102 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 trd_0433 3c619584ea42eb639e1bd5952a833edf 243 Gene3D G3DSA:3.30.230.70 15 241 5.4E-58 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0433 3c619584ea42eb639e1bd5952a833edf 243 Hamap MF_00564 Ribonuclease PH [rph]. 17 241 44.155 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 trd_0433 3c619584ea42eb639e1bd5952a833edf 243 SUPERFAMILY SSF54211 11 186 5.06E-39 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0433 3c619584ea42eb639e1bd5952a833edf 243 SUPERFAMILY SSF55666 157 240 3.53E-22 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_0433 3c619584ea42eb639e1bd5952a833edf 243 Pfam PF03725 3' exoribonuclease family, domain 2 163 227 7.2E-11 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 trd_1481 5dd09d1e52301296109983b3f42899c3 243 PIRSF PIRSF000883 1 243 1.6E-60 T 13-10-2018 IPR011152 Phosphoesterase MJ0912 trd_1481 5dd09d1e52301296109983b3f42899c3 243 Gene3D G3DSA:3.60.21.10 1 243 8.2E-80 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_1481 5dd09d1e52301296109983b3f42899c3 243 SUPERFAMILY SSF56300 1 242 2.43E-61 T 13-10-2018 trd_1481 5dd09d1e52301296109983b3f42899c3 243 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 200 2.6E-27 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 trd_A0660 76e67c65a663b0db82d640cb5823da7f 158 Gene3D G3DSA:3.10.20.30 74 158 1.3E-8 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_A0660 76e67c65a663b0db82d640cb5823da7f 158 SUPERFAMILY SSF54285 75 158 3.92E-8 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp trd_1596 d000a9b75d2c2d83044a37b74a9a2009 433 Pfam PF06245 Protein of unknown function (DUF1015) 21 424 1.3E-78 T 13-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 trd_1052 2657814130dced0580b26bb86d2d5b96 304 Pfam PF02517 CAAX protease self-immunity 216 294 7.6E-8 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 6 111 9.5E-18 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 SUPERFAMILY SSF54211 3 112 2.43E-23 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 Gene3D G3DSA:3.30.230.10 2 111 1.7E-29 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 13-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 Pfam PF00825 Ribonuclease P 3 110 2.4E-26 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 2 113 18.317 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 trd_1087 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 33 109 3.0E-13 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 Gene3D G3DSA:3.40.50.720 4 311 2.5E-131 T 13-10-2018 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 SUPERFAMILY SSF52283 2 137 1.7E-36 T 13-10-2018 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 Gene3D G3DSA:3.40.50.720 98 286 2.5E-131 T 13-10-2018 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 319 1.7E-34 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 SUPERFAMILY SSF51735 100 288 6.37E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 287 1.5E-69 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 trd_0796 ad5a9d3ffe19ced70af9b99127dbf19c 328 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site trd_A0058 41807b49224685b966a4da77cd472e2a 271 SUPERFAMILY SSF54862 5 219 6.8E-64 T 13-10-2018 trd_A0058 41807b49224685b966a4da77cd472e2a 271 PIRSF PIRSF036298 2 269 6.5E-64 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 trd_A0058 41807b49224685b966a4da77cd472e2a 271 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 113 124 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_A0058 41807b49224685b966a4da77cd472e2a 271 Gene3D G3DSA:3.30.70.20 6 186 1.1E-55 T 13-10-2018 trd_A0058 41807b49224685b966a4da77cd472e2a 271 Pfam PF13247 4Fe-4S dicluster domain 73 167 2.8E-26 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_A0058 41807b49224685b966a4da77cd472e2a 271 Gene3D G3DSA:3.30.70.20 83 141 1.1E-55 T 13-10-2018 trd_A0466 08aed88b7308f10e1f6a8b0f0baccdb2 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 108 133 8.2E-8 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_A0466 08aed88b7308f10e1f6a8b0f0baccdb2 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 203 222 8.2E-8 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_A0466 08aed88b7308f10e1f6a8b0f0baccdb2 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 183 202 8.2E-8 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_A0466 08aed88b7308f10e1f6a8b0f0baccdb2 261 Pfam PF01061 ABC-2 type transporter 16 223 1.0E-27 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 trd_A0466 08aed88b7308f10e1f6a8b0f0baccdb2 261 PIRSF PIRSF006648 1 257 2.1E-24 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0739 c137153ee82a8eb663a2ef506cc0d913 343 Gene3D G3DSA:3.90.190.20 211 337 3.1E-6 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0739 c137153ee82a8eb663a2ef506cc0d913 343 SUPERFAMILY SSF53623 39 194 1.83E-9 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0739 c137153ee82a8eb663a2ef506cc0d913 343 SUPERFAMILY SSF53244 210 325 3.05E-5 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_1878 8fe40a1b8f8d03e34ed33582226020b8 346 PIRSF PIRSF000310 1 343 1.3E-92 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 trd_1878 8fe40a1b8f8d03e34ed33582226020b8 346 Gene3D G3DSA:4.10.480.10 214 294 5.0E-26 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily trd_1878 8fe40a1b8f8d03e34ed33582226020b8 346 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 214 292 2.3E-24 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal trd_1878 8fe40a1b8f8d03e34ed33582226020b8 346 Gene3D G3DSA:3.40.50.700 5 213 3.4E-53 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily trd_1878 8fe40a1b8f8d03e34ed33582226020b8 346 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 23 191 1.7E-27 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1878 8fe40a1b8f8d03e34ed33582226020b8 346 SUPERFAMILY SSF56770 11 293 3.92E-69 T 13-10-2018 trd_0946 b25936c0ff68813ce882fe35518378f5 233 Gene3D G3DSA:1.10.10.10 148 228 5.8E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0946 b25936c0ff68813ce882fe35518378f5 233 SUPERFAMILY SSF88659 144 227 1.85E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_0946 b25936c0ff68813ce882fe35518378f5 233 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 43 221 3.6E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_0946 b25936c0ff68813ce882fe35518378f5 233 Pfam PF08281 Sigma-70, region 4 169 209 4.9E-6 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_1110 50b7e5dd45c605266e8e0ce16da662d0 420 Pfam PF07690 Major Facilitator Superfamily 23 237 5.4E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1110 50b7e5dd45c605266e8e0ce16da662d0 420 SUPERFAMILY SSF103473 14 398 3.53E-54 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1110 50b7e5dd45c605266e8e0ce16da662d0 420 Gene3D G3DSA:1.20.1250.20 15 202 6.2E-25 T 13-10-2018 trd_1110 50b7e5dd45c605266e8e0ce16da662d0 420 Gene3D G3DSA:1.20.1250.20 212 413 1.3E-20 T 13-10-2018 trd_0823 961c51473e2f3b56926d8fa1bbb6ce91 242 Pfam PF04493 Endonuclease V 26 229 1.6E-70 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 trd_0823 961c51473e2f3b56926d8fa1bbb6ce91 242 Gene3D G3DSA:3.30.2170.10 12 238 2.3E-74 T 13-10-2018 trd_0823 961c51473e2f3b56926d8fa1bbb6ce91 242 Hamap MF_00801 Endonuclease V [nfi]. 17 238 32.638 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 trd_0424 4f5323c689474f10aa3405242f629381 469 Pfam PF01571 Aminomethyltransferase folate-binding domain 30 255 1.3E-40 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain trd_0424 4f5323c689474f10aa3405242f629381 469 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 316 423 1.0E-7 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 trd_0424 4f5323c689474f10aa3405242f629381 469 SUPERFAMILY SSF103025 21 330 4.87E-51 T 13-10-2018 trd_0424 4f5323c689474f10aa3405242f629381 469 PIRSF PIRSF006487 355 428 30.0 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_0424 4f5323c689474f10aa3405242f629381 469 PIRSF PIRSF006487 5 362 4.4E-24 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 trd_1506 3bbdf1e98aa812884dde9a74b7aebce8 211 SMART SM00849 14 190 4.8E-40 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1506 3bbdf1e98aa812884dde9a74b7aebce8 211 SUPERFAMILY SSF56281 9 200 6.63E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1506 3bbdf1e98aa812884dde9a74b7aebce8 211 Pfam PF00753 Metallo-beta-lactamase superfamily 11 190 7.8E-28 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1506 3bbdf1e98aa812884dde9a74b7aebce8 211 Gene3D G3DSA:3.60.15.10 3 207 1.5E-56 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0251 32eeca13c1f0365de0bf707592101eb9 511 Gene3D G3DSA:3.40.190.10 168 483 8.1E-72 T 13-10-2018 trd_0251 32eeca13c1f0365de0bf707592101eb9 511 Gene3D G3DSA:3.40.190.10 67 443 8.1E-72 T 13-10-2018 trd_0251 32eeca13c1f0365de0bf707592101eb9 511 SUPERFAMILY SSF53850 24 502 8.15E-66 T 13-10-2018 trd_0251 32eeca13c1f0365de0bf707592101eb9 511 Pfam PF01547 Bacterial extracellular solute-binding protein 61 394 4.3E-36 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_1206 63aa6e4f301c36cafb7cc97fe3a2f530 156 Pfam PF01799 [2Fe-2S] binding domain 73 145 1.1E-33 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 trd_1206 63aa6e4f301c36cafb7cc97fe3a2f530 156 SUPERFAMILY SSF54292 1 78 5.24E-26 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_1206 63aa6e4f301c36cafb7cc97fe3a2f530 156 Gene3D G3DSA:1.10.150.120 75 156 2.8E-36 T 13-10-2018 trd_1206 63aa6e4f301c36cafb7cc97fe3a2f530 156 Gene3D G3DSA:3.10.20.30 1 74 2.6E-30 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_1206 63aa6e4f301c36cafb7cc97fe3a2f530 156 SUPERFAMILY SSF47741 84 153 1.57E-35 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily trd_1206 63aa6e4f301c36cafb7cc97fe3a2f530 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 59 2.3E-5 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 trd_1567 b9c56552314dc377e16656e6bb1adbc5 388 PIRSF PIRSF005572 1 387 1.2E-59 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 trd_1567 b9c56552314dc377e16656e6bb1adbc5 388 Pfam PF00266 Aminotransferase class-V 4 372 1.9E-82 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_1567 b9c56552314dc377e16656e6bb1adbc5 388 Gene3D G3DSA:3.40.640.10 17 270 1.2E-106 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1567 b9c56552314dc377e16656e6bb1adbc5 388 SUPERFAMILY SSF53383 3 380 1.14E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_1567 b9c56552314dc377e16656e6bb1adbc5 388 Gene3D G3DSA:3.90.1150.10 4 374 1.2E-106 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1157 03721c037a35a450bd3197a05382989c 407 Pfam PF07690 Major Facilitator Superfamily 22 333 1.8E-33 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1157 03721c037a35a450bd3197a05382989c 407 Gene3D G3DSA:1.20.1250.20 9 396 3.1E-54 T 13-10-2018 trd_1157 03721c037a35a450bd3197a05382989c 407 SUPERFAMILY SSF103473 14 400 1.01E-52 T 13-10-2018 IPR036259 MFS transporter superfamily trd_0836 66aefd6ded9b4bca12de09d94fe6ce67 434 Pfam PF01098 Cell cycle protein 73 433 8.9E-72 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_0803 d039c2c0af998bdc4d0457417c6c910a 318 Pfam PF03308 ArgK protein 20 265 3.3E-62 T 13-10-2018 trd_0803 d039c2c0af998bdc4d0457417c6c910a 318 Gene3D G3DSA:3.40.50.300 43 245 2.1E-58 T 13-10-2018 trd_0803 d039c2c0af998bdc4d0457417c6c910a 318 SUPERFAMILY SSF52540 4 268 2.87E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 SUPERFAMILY SSF53383 16 423 5.83E-143 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 275 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 Gene3D G3DSA:3.90.1150.10 5 418 6.2E-160 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 Pfam PF00202 Aminotransferase class-III 21 421 2.9E-121 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 Gene3D G3DSA:3.40.640.10 56 321 6.2E-160 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 PIRSF PIRSF000521 8 128 2.1E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_A0362 c035d3fe0bed74a0ba25b50f1f0f1cd5 429 PIRSF PIRSF000521 124 426 3.5E-39 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1537 63d2e0671378b5f38cb953bbae4fe342 417 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 28 397 2.3E-60 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 trd_1537 63d2e0671378b5f38cb953bbae4fe342 417 SUPERFAMILY SSF103473 22 413 5.1E-58 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1537 63d2e0671378b5f38cb953bbae4fe342 417 Gene3D G3DSA:1.20.1720.10 26 405 2.9E-82 T 13-10-2018 trd_1537 63d2e0671378b5f38cb953bbae4fe342 417 Pfam PF07690 Major Facilitator Superfamily 32 371 7.8E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1780 0c8eb969864c88f50ec7d03063c7b7ff 119 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 2 119 19.139 T 13-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 trd_1780 0c8eb969864c88f50ec7d03063c7b7ff 119 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 22 118 7.6E-35 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_1780 0c8eb969864c88f50ec7d03063c7b7ff 119 Gene3D G3DSA:1.20.58.1610 2 119 4.4E-41 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0934 8716eae1e2f1e760f7609fe78302b9f3 299 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 95 8.7E-12 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0934 8716eae1e2f1e760f7609fe78302b9f3 299 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 142 260 1.7E-13 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0934 8716eae1e2f1e760f7609fe78302b9f3 299 SUPERFAMILY SSF54593 1 262 3.17E-43 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0934 8716eae1e2f1e760f7609fe78302b9f3 299 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 trd_A0934 8716eae1e2f1e760f7609fe78302b9f3 299 Gene3D G3DSA:3.10.180.10 142 298 1.2E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0934 8716eae1e2f1e760f7609fe78302b9f3 299 Gene3D G3DSA:3.10.180.10 2 129 6.1E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1516 11f24ae420dfcad987475c527f3f6364 281 TIGRFAM TIGR00761 argB: acetylglutamate kinase 4 250 2.7E-56 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_1516 11f24ae420dfcad987475c527f3f6364 281 PIRSF PIRSF000728 1 275 1.5E-65 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 trd_1516 11f24ae420dfcad987475c527f3f6364 281 Gene3D G3DSA:3.40.1160.10 4 272 3.5E-64 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_1516 11f24ae420dfcad987475c527f3f6364 281 PRINTS PR00474 Glutamate 5-kinase family signature 226 246 3.3E-9 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 trd_1516 11f24ae420dfcad987475c527f3f6364 281 PRINTS PR00474 Glutamate 5-kinase family signature 51 65 3.3E-9 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 trd_1516 11f24ae420dfcad987475c527f3f6364 281 PRINTS PR00474 Glutamate 5-kinase family signature 172 199 3.3E-9 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 trd_1516 11f24ae420dfcad987475c527f3f6364 281 SUPERFAMILY SSF53633 4 273 2.49E-49 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily trd_1516 11f24ae420dfcad987475c527f3f6364 281 Pfam PF00696 Amino acid kinase family 4 247 3.0E-33 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 trd_1516 11f24ae420dfcad987475c527f3f6364 281 Hamap MF_02082 [LysW]-aminoadipate/[LysW]-glutamate kinase [lysZ]. 4 272 49.297 T 13-10-2018 IPR037529 [LysW]-aminoadipate/[LysW]-glutamate kinase GO:0016301 trd_0699 9bb6fea1cbcc553d7e048fa2f2f76e08 81 SMART SM00834 1 41 2.9E-17 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_0699 9bb6fea1cbcc553d7e048fa2f2f76e08 81 Pfam PF09723 Zinc ribbon domain 1 39 5.6E-18 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_0699 9bb6fea1cbcc553d7e048fa2f2f76e08 81 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 51 5.7E-22 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_1901 a0535de09a450d3d3415223c7ca0f538 109 Gene3D G3DSA:3.40.50.450 8 100 4.8E-10 T 13-10-2018 trd_1901 a0535de09a450d3d3415223c7ca0f538 109 Pfam PF02481 DNA recombination-mediator protein A 35 92 4.2E-10 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 trd_0755 9df12faa720adab8f717ca0a4bdccded 426 Gene3D G3DSA:3.90.1150.10 8 389 4.3E-181 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0755 9df12faa720adab8f717ca0a4bdccded 426 PIRSF PIRSF000412 1 417 8.0E-170 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 trd_0755 9df12faa720adab8f717ca0a4bdccded 426 Pfam PF00464 Serine hydroxymethyltransferase 7 381 9.6E-169 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 trd_0755 9df12faa720adab8f717ca0a4bdccded 426 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 4 412 53.099 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 trd_0755 9df12faa720adab8f717ca0a4bdccded 426 Gene3D G3DSA:3.40.640.10 34 284 4.3E-181 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0755 9df12faa720adab8f717ca0a4bdccded 426 SUPERFAMILY SSF53383 3 413 6.6E-179 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_A0901 d3ec816ff535e0cd9ea4be429a2eae08 456 Pfam PF11013 Protein of unknown function (DUF2851) 14 308 8.5E-57 T 13-10-2018 IPR021272 Protein of unknown function DUF2851 trd_1880 fcb7229910c7f7460b9dd2ac2eb00e0a 115 TIGRFAM TIGR04272 cxxc_cxxc_Mbark: CxxC-x17-CxxC domain 73 109 1.3E-20 T 13-10-2018 IPR026363 CxxC-x17-CxxC domain trd_1880 fcb7229910c7f7460b9dd2ac2eb00e0a 115 Pfam PF13451 Probable zinc-ribbon domain 7 52 1.2E-24 T 13-10-2018 IPR025306 Probable zinc-binding domain trd_A0245 2ebddd375a5845103adb90608374575c 143 Gene3D G3DSA:2.30.110.10 8 140 1.2E-42 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_A0245 2ebddd375a5845103adb90608374575c 143 TIGRFAM TIGR03668 Rv0121_F420: PPOX class probable F420-dependent enzyme, Rv0121 family 8 139 1.8E-59 T 13-10-2018 IPR019967 F420-dependent enzyme, PPOX class, family Rv0121, probable trd_A0245 2ebddd375a5845103adb90608374575c 143 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 6 100 9.4E-16 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0245 2ebddd375a5845103adb90608374575c 143 SUPERFAMILY SSF50475 5 140 6.17E-27 T 13-10-2018 trd_A0754 4439b687d00821492beb58609f46ecd8 334 Gene3D G3DSA:3.40.50.720 150 284 8.3E-99 T 13-10-2018 trd_A0754 4439b687d00821492beb58609f46ecd8 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 132 3.3E-31 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 trd_A0754 4439b687d00821492beb58609f46ecd8 334 SUPERFAMILY SSF50129 1 166 2.43E-51 T 13-10-2018 IPR011032 GroES-like superfamily trd_A0754 4439b687d00821492beb58609f46ecd8 334 Gene3D G3DSA:3.90.180.10 19 329 8.3E-99 T 13-10-2018 trd_A0754 4439b687d00821492beb58609f46ecd8 334 SMART SM00829 8 332 7.6E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 trd_A0754 4439b687d00821492beb58609f46ecd8 334 Pfam PF00107 Zinc-binding dehydrogenase 175 298 1.1E-18 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 trd_A0754 4439b687d00821492beb58609f46ecd8 334 SUPERFAMILY SSF51735 137 306 2.15E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0754 4439b687d00821492beb58609f46ecd8 334 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 7 292 6.8E-97 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 Hamap MF_00815 ATP synthase gamma chain [atpG]. 4 292 34.775 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 Gene3D G3DSA:3.40.1380.10 64 211 3.7E-103 T 13-10-2018 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 SUPERFAMILY SSF52943 7 292 2.49E-87 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 278 291 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 Gene3D G3DSA:1.10.287.80 9 288 3.7E-103 T 13-10-2018 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 80 99 6.5E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 174 191 6.5E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 239 258 6.5E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 270 291 6.5E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_1229 cef61cb444e9a248da6a01732fcaacf4 296 Pfam PF00231 ATP synthase 8 292 8.6E-95 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 trd_A0086 5b7439adf895b78b7ecefad234c805df 129 Gene3D G3DSA:3.10.180.10 8 121 1.7E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0086 5b7439adf895b78b7ecefad234c805df 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 119 8.0E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0086 5b7439adf895b78b7ecefad234c805df 129 SUPERFAMILY SSF54593 4 124 2.82E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0005 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 228 335 4.8E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 341 455 4.2E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 456 683 2.8E-27 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SUPERFAMILY SSF48452 457 665 3.98E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 305 338 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 145 178 71.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 185 218 220.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 225 258 59.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 465 498 350.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 345 378 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 585 618 0.02 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 545 578 15.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 265 298 48.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 505 538 27.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SUPERFAMILY SSF48452 260 470 4.78E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 Pfam PF13424 Tetratricopeptide repeat 265 330 9.8E-8 T 13-10-2018 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 Pfam PF13424 Tetratricopeptide repeat 548 617 1.3E-9 T 13-10-2018 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 SUPERFAMILY SSF48452 127 260 3.97E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_0005 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 97 227 8.2E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_A0182 2fd26568cf880b283a8d1eb907af21e8 166 Gene3D G3DSA:3.30.1490.190 107 161 1.2E-16 T 13-10-2018 trd_A0182 2fd26568cf880b283a8d1eb907af21e8 166 SUPERFAMILY SSF46785 25 155 3.24E-37 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0182 2fd26568cf880b283a8d1eb907af21e8 166 Gene3D G3DSA:1.10.10.10 22 104 1.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0182 2fd26568cf880b283a8d1eb907af21e8 166 Pfam PF01475 Ferric uptake regulator family 33 150 3.5E-28 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 trd_1793 6041bcd07d7db569e882b1d798321cb6 251 Gene3D G3DSA:2.40.30.130 1 91 1.4E-24 T 13-10-2018 trd_1793 6041bcd07d7db569e882b1d798321cb6 251 Gene3D G3DSA:3.30.980.10 92 249 4.2E-38 T 13-10-2018 trd_1793 6041bcd07d7db569e882b1d798321cb6 251 SUPERFAMILY SSF55186 95 241 1.57E-38 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 trd_1793 6041bcd07d7db569e882b1d798321cb6 251 SUPERFAMILY SSF50447 1 87 3.18E-14 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily trd_1793 6041bcd07d7db569e882b1d798321cb6 251 Pfam PF01411 tRNA synthetases class II (A) 16 95 9.2E-10 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 trd_1793 6041bcd07d7db569e882b1d798321cb6 251 SMART SM00863 193 236 2.6E-11 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 trd_1793 6041bcd07d7db569e882b1d798321cb6 251 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 193 236 5.5E-9 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 trd_0834 bd89a52d23184321a00b425432bfc753 125 Gene3D G3DSA:3.30.2010.20 2 124 3.1E-37 T 13-10-2018 IPR038555 Zincin-like metallopeptidase superfamily trd_0834 bd89a52d23184321a00b425432bfc753 125 Pfam PF06262 Zincin-like metallopeptidase 29 123 2.2E-27 T 13-10-2018 IPR010428 Zincin-like metallopeptidase trd_0834 bd89a52d23184321a00b425432bfc753 125 SUPERFAMILY SSF55486 6 122 4.23E-32 T 13-10-2018 trd_1937 e95cd459c440e2a3adfc01c8b7b4aee8 272 Gene3D G3DSA:2.40.10.350 175 254 5.6E-30 T 13-10-2018 trd_1937 e95cd459c440e2a3adfc01c8b7b4aee8 272 PIRSF PIRSF038471 2 272 3.4E-47 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 trd_1937 e95cd459c440e2a3adfc01c8b7b4aee8 272 Pfam PF04085 rod shape-determining protein MreC 118 266 9.2E-29 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 trd_1937 e95cd459c440e2a3adfc01c8b7b4aee8 272 Gene3D G3DSA:2.40.10.340 116 262 5.6E-30 T 13-10-2018 trd_1717 87fe380206c26b84a4f9fd064aac1cfd 357 Gene3D G3DSA:3.20.20.140 18 357 7.4E-99 T 13-10-2018 trd_1717 87fe380206c26b84a4f9fd064aac1cfd 357 SUPERFAMILY SSF51556 41 356 1.2E-77 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_1717 87fe380206c26b84a4f9fd064aac1cfd 357 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 35 354 9.7E-84 T 13-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 trd_1384 a28396b60b621e04a91e851d6af7811b 376 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 169 185 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_1384 a28396b60b621e04a91e851d6af7811b 376 SUPERFAMILY SSF51726 34 373 4.36E-110 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1384 a28396b60b621e04a91e851d6af7811b 376 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 38 369 5.2E-126 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_1384 a28396b60b621e04a91e851d6af7811b 376 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 35 371 48.444 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_1384 a28396b60b621e04a91e851d6af7811b 376 Gene3D G3DSA:3.20.20.210 23 376 1.4E-141 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1384 a28396b60b621e04a91e851d6af7811b 376 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 35 370 3.5E-127 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_1384 a28396b60b621e04a91e851d6af7811b 376 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 51 60 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_1279 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 SUPERFAMILY SSF161098 93 319 1.7E-22 T 13-10-2018 IPR035906 MetI-like superfamily trd_1279 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 334 2.7E-46 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1279 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 Gene3D G3DSA:1.10.3720.10 92 327 1.6E-29 T 13-10-2018 IPR035906 MetI-like superfamily trd_0878 d138fbb066329ce359a12012b8723e86 407 Pfam PF13416 Bacterial extracellular solute-binding protein 118 367 3.0E-34 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_0878 d138fbb066329ce359a12012b8723e86 407 SUPERFAMILY SSF53850 84 405 2.99E-58 T 13-10-2018 trd_0878 d138fbb066329ce359a12012b8723e86 407 Gene3D G3DSA:3.40.190.10 185 314 3.6E-118 T 13-10-2018 trd_0878 d138fbb066329ce359a12012b8723e86 407 Gene3D G3DSA:3.40.190.10 88 404 3.6E-118 T 13-10-2018 trd_0425 c5d0106b32b2231bbb7b32457e72eb8b 41 Pfam PF13453 Transcription factor zinc-finger 6 37 5.1E-10 T 13-10-2018 IPR027392 Transcription factor zinc-finger trd_1405 f4c2f09abe1e5506461380484ee89083 590 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 284 4.7E-23 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_1405 f4c2f09abe1e5506461380484ee89083 590 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 563 585 2.1E-6 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal trd_1405 f4c2f09abe1e5506461380484ee89083 590 Gene3D G3DSA:3.40.50.300 341 588 5.0E-57 T 13-10-2018 trd_1405 f4c2f09abe1e5506461380484ee89083 590 Pfam PF00005 ABC transporter 368 514 1.5E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1405 f4c2f09abe1e5506461380484ee89083 590 SUPERFAMILY SSF52540 350 586 1.71E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1405 f4c2f09abe1e5506461380484ee89083 590 SMART SM00382 376 571 1.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0922 38062e71782143320be598f0c6d9e7f5 303 SUPERFAMILY SSF103481 53 153 7.85E-15 T 13-10-2018 trd_0922 38062e71782143320be598f0c6d9e7f5 303 SUPERFAMILY SSF103481 205 303 9.81E-11 T 13-10-2018 trd_0922 38062e71782143320be598f0c6d9e7f5 303 Pfam PF00892 EamA-like transporter family 163 301 3.1E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_0922 38062e71782143320be598f0c6d9e7f5 303 Pfam PF00892 EamA-like transporter family 20 151 1.5E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_0476 249ba924f8ec60b4d037b9747ec00e4a 280 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 27 273 2.2E-50 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 trd_0476 249ba924f8ec60b4d037b9747ec00e4a 280 SUPERFAMILY SSF52518 8 277 2.03E-89 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0476 249ba924f8ec60b4d037b9747ec00e4a 280 Gene3D G3DSA:3.40.50.970 7 280 5.7E-109 T 13-10-2018 trd_0859 152871975eb450e841447d02d27d8bf9 311 SUPERFAMILY SSF51569 10 275 1.03E-7 T 13-10-2018 trd_0859 152871975eb450e841447d02d27d8bf9 311 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 12 302 2.1E-45 T 13-10-2018 IPR018659 Protein of unknown function DUF2090 trd_0859 152871975eb450e841447d02d27d8bf9 311 Gene3D G3DSA:3.20.20.70 4 310 1.2E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0288 76e5dd2adb550ae0bd9865806af86af2 191 SUPERFAMILY SSF52980 8 188 1.5E-19 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 trd_A0288 76e5dd2adb550ae0bd9865806af86af2 191 Gene3D G3DSA:3.90.1570.10 9 190 2.4E-12 T 13-10-2018 trd_A0288 76e5dd2adb550ae0bd9865806af86af2 191 Pfam PF05685 Putative restriction endonuclease 30 185 4.8E-32 T 13-10-2018 IPR008538 Domain of unknown function DUF820 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 PRINTS PR00971 Ribosomal protein S10 family signature 64 78 7.8E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 PRINTS PR00971 Ribosomal protein S10 family signature 43 58 7.8E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 PRINTS PR00971 Ribosomal protein S10 family signature 8 21 7.8E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 SUPERFAMILY SSF54999 8 105 2.09E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 ProSitePatterns PS00361 Ribosomal protein S10 signature. 32 47 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 Gene3D G3DSA:3.30.70.600 5 105 8.8E-39 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 7 104 5.7E-45 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 6 105 27.551 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 SMART SM01403 10 104 6.9E-58 T 13-10-2018 IPR027486 Ribosomal protein S10 domain trd_0985 5c32222c25b5064b9fc9f8cec616074d 105 Pfam PF00338 Ribosomal protein S10p/S20e 10 104 1.4E-36 T 13-10-2018 IPR027486 Ribosomal protein S10 domain trd_A0620 73fc1b4230c7166bc0213ad419f06de3 218 Pfam PF13578 Methyltransferase domain 75 173 4.7E-12 T 13-10-2018 trd_A0620 73fc1b4230c7166bc0213ad419f06de3 218 SUPERFAMILY SSF53335 56 203 3.65E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_A0620 73fc1b4230c7166bc0213ad419f06de3 218 Gene3D G3DSA:3.40.50.150 34 211 2.6E-29 T 13-10-2018 trd_A0923 d3be4b2cce367acc396cad71c3e9e37e 335 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 52 272 3.3E-52 T 13-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 trd_A0923 d3be4b2cce367acc396cad71c3e9e37e 335 Gene3D G3DSA:1.10.620.20 5 324 5.6E-90 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 trd_A0923 d3be4b2cce367acc396cad71c3e9e37e 335 PIRSF PIRSF000040 2 335 1.3E-70 T 13-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 trd_A0923 d3be4b2cce367acc396cad71c3e9e37e 335 SUPERFAMILY SSF47240 9 312 2.03E-63 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_1199 eb52325548f0ffd2b1e941f87d1e0a64 230 Pfam PF04298 Putative neutral zinc metallopeptidase 8 223 2.4E-89 T 13-10-2018 IPR007395 Putative neutral zinc metallopeptidase trd_1037 caed527c2c31058f7093deb7eb206a03 372 Gene3D G3DSA:3.40.640.10 17 259 1.1E-122 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1037 caed527c2c31058f7093deb7eb206a03 372 PIRSF PIRSF000524 1 370 5.0E-120 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 trd_1037 caed527c2c31058f7093deb7eb206a03 372 Gene3D G3DSA:3.90.1150.10 12 360 1.1E-122 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1037 caed527c2c31058f7093deb7eb206a03 372 Pfam PF00266 Aminotransferase class-V 8 344 5.8E-39 T 13-10-2018 IPR000192 Aminotransferase class V domain trd_1037 caed527c2c31058f7093deb7eb206a03 372 SUPERFAMILY SSF53383 6 359 2.72E-95 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0537 7d0bb97c409c43375e908281a968b9cc 74 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 4 60 15.334 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 16 25 8.0E-6 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 28 38 8.0E-6 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 40 50 8.0E-6 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 8 16 8.0E-6 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 6 62 2.7E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 Pfam PF01165 Ribosomal protein S21 6 60 2.6E-14 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0537 7d0bb97c409c43375e908281a968b9cc 74 Gene3D G3DSA:1.20.5.1150 19 57 1.0E-6 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_A0497 d58b330bd8c0d34dcec47b76f213aa5c 400 Gene3D G3DSA:2.130.10.10 42 364 2.2E-9 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_A0497 d58b330bd8c0d34dcec47b76f213aa5c 400 SUPERFAMILY SSF50969 56 328 1.18E-7 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like trd_1041 689648cdb76068862a270a39380e69be 349 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 27 349 2.2E-116 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1041 689648cdb76068862a270a39380e69be 349 Pfam PF13353 4Fe-4S single cluster domain 41 138 9.7E-7 T 13-10-2018 trd_1041 689648cdb76068862a270a39380e69be 349 SUPERFAMILY SSF102114 27 301 7.98E-77 T 13-10-2018 trd_1041 689648cdb76068862a270a39380e69be 349 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 25 349 39.735 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1041 689648cdb76068862a270a39380e69be 349 Pfam PF04055 Radical SAM superfamily 39 197 7.4E-30 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 trd_1041 689648cdb76068862a270a39380e69be 349 Gene3D G3DSA:3.20.20.70 24 349 2.7E-95 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_1041 689648cdb76068862a270a39380e69be 349 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 40 51 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1041 689648cdb76068862a270a39380e69be 349 SMART SM00729 34 238 8.2E-15 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 trd_1041 689648cdb76068862a270a39380e69be 349 Pfam PF06463 Molybdenum Cofactor Synthesis C 206 332 6.4E-37 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1840 26775ed4556992039a2e872f69224f9c 301 SUPERFAMILY SSF161098 92 281 5.49E-24 T 13-10-2018 IPR035906 MetI-like superfamily trd_1840 26775ed4556992039a2e872f69224f9c 301 Gene3D G3DSA:1.10.3720.10 88 295 4.0E-19 T 13-10-2018 IPR035906 MetI-like superfamily trd_1840 26775ed4556992039a2e872f69224f9c 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 1.6E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0111 75f439adb3e4f6a25d9b0bea16b0b99b 315 Pfam PF03787 RAMP superfamily 153 312 5.6E-6 T 13-10-2018 IPR005537 CRISPR type III-associated RAMP protein trd_A0111 75f439adb3e4f6a25d9b0bea16b0b99b 315 TIGRFAM TIGR01898 cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6 137 311 1.2E-34 T 13-10-2018 IPR010172 CRISPR-associated protein, TM1791 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 PRINTS PR00063 Ribosomal protein L27 signature 4 28 8.5E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 PRINTS PR00063 Ribosomal protein L27 signature 54 78 8.5E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 PRINTS PR00063 Ribosomal protein L27 signature 29 53 8.5E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 Gene3D G3DSA:2.40.50.100 20 85 6.7E-28 T 13-10-2018 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 83 3.0E-13 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 6.1E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 28.382 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 SUPERFAMILY SSF110324 2 83 8.37E-34 T 13-10-2018 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 Pfam PF01016 Ribosomal L27 protein 2 81 2.1E-37 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1425 46a7ee921d33dcfa3f45cec26c31a979 99 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_1390 ac34c68b02d1929165d974f40d779bb2 281 Gene3D G3DSA:3.40.50.1820 2 280 1.7E-80 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1390 ac34c68b02d1929165d974f40d779bb2 281 Pfam PF12697 Alpha/beta hydrolase family 26 271 1.7E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1390 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 6.7E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1390 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 6.7E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1390 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 223 237 6.7E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1390 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 6.7E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_1390 ac34c68b02d1929165d974f40d779bb2 281 SUPERFAMILY SSF53474 8 278 3.95E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1660 c37937b85983441c8d3a4dcf782f93fb 164 Gene3D G3DSA:3.30.450.40 23 163 8.2E-51 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1660 c37937b85983441c8d3a4dcf782f93fb 164 SUPERFAMILY SSF55781 11 155 1.64E-38 T 13-10-2018 trd_1660 c37937b85983441c8d3a4dcf782f93fb 164 Pfam PF13185 GAF domain 27 153 5.0E-17 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1660 c37937b85983441c8d3a4dcf782f93fb 164 SMART SM00065 22 164 6.2E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_A0904 9425b9cd5a8866c0037f25b26caf6990 251 Gene3D G3DSA:3.40.50.10780 1 200 8.7E-34 T 13-10-2018 IPR027476 D-aminopeptidase, N-terminal trd_A0904 9425b9cd5a8866c0037f25b26caf6990 251 Pfam PF04951 D-aminopeptidase 1 212 7.0E-28 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase trd_A0904 9425b9cd5a8866c0037f25b26caf6990 251 SUPERFAMILY SSF63992 1 212 1.44E-30 T 13-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily trd_A0521 1597df2a6f384d8a4cfc29398acc1f9e 319 Gene3D G3DSA:3.60.20.30 175 312 1.1E-36 T 13-10-2018 trd_A0521 1597df2a6f384d8a4cfc29398acc1f9e 319 SUPERFAMILY SSF56235 21 307 2.7E-72 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_A0521 1597df2a6f384d8a4cfc29398acc1f9e 319 Pfam PF01112 Asparaginase 22 300 3.0E-70 T 13-10-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 trd_0342 9597dd665e6bad35627b2a2394acdfee 499 Pfam PF09818 Predicted ATPase of the ABC class 2 363 6.5E-155 T 13-10-2018 IPR019195 ABC transporter, ATPase, putative trd_0342 9597dd665e6bad35627b2a2394acdfee 499 Gene3D G3DSA:3.40.50.300 162 367 1.6E-5 T 13-10-2018 trd_0342 9597dd665e6bad35627b2a2394acdfee 499 SUPERFAMILY SSF52540 166 342 4.07E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 SMART SM00283 289 551 7.6E-47 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 Gene3D G3DSA:1.10.490.10 29 200 4.5E-43 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 SUPERFAMILY SSF58104 296 549 2.49E-52 T 13-10-2018 trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 Gene3D G3DSA:1.10.287.950 274 569 2.2E-53 T 13-10-2018 trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 Pfam PF11563 Protoglobin 28 196 1.6E-28 T 13-10-2018 trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 358 518 4.9E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 trd_1385 e4a2981d96e9a15db567269bafa3ed4d 615 SUPERFAMILY SSF46458 16 190 2.45E-25 T 13-10-2018 IPR009050 Globin-like superfamily trd_A0324 185713ddb54227e2f102b084c8d2735e 308 SUPERFAMILY SSF161098 99 305 5.89E-31 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0324 185713ddb54227e2f102b084c8d2735e 308 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 27 71 8.9E-14 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain trd_A0324 185713ddb54227e2f102b084c8d2735e 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 306 8.0E-35 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0324 185713ddb54227e2f102b084c8d2735e 308 Gene3D G3DSA:1.10.3720.10 93 307 5.8E-25 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0384 79b66df70da8582069956bcfd9ad5de7 333 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 134 294 4.5E-54 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 trd_A0384 79b66df70da8582069956bcfd9ad5de7 333 Gene3D G3DSA:3.40.91.30 19 117 5.9E-9 T 13-10-2018 IPR011578 T7 endonuclease I-like GO:0003677|GO:0004536 trd_A0384 79b66df70da8582069956bcfd9ad5de7 333 Gene3D G3DSA:3.40.50.2020 123 307 4.2E-58 T 13-10-2018 trd_A0384 79b66df70da8582069956bcfd9ad5de7 333 Pfam PF00156 Phosphoribosyl transferase domain 140 280 2.5E-21 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_A0384 79b66df70da8582069956bcfd9ad5de7 333 SUPERFAMILY SSF53271 112 299 1.16E-48 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_A0276 3621ff09d1802ddcebf6d2da1b3e9f9f 309 ProDom PD040045 PLASMID ORF2 ORF2' 14 297 2.0E-40 T 13-10-2018 trd_A0738 c8850837ff00194f22edba5833d493dc 160 SMART SM00903 11 157 1.6E-55 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 trd_A0738 c8850837ff00194f22edba5833d493dc 160 SUPERFAMILY SSF50475 3 157 2.85E-48 T 13-10-2018 trd_A0738 c8850837ff00194f22edba5833d493dc 160 Gene3D G3DSA:2.30.110.10 1 159 6.7E-51 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_A0738 c8850837ff00194f22edba5833d493dc 160 Pfam PF01613 Flavin reductase like domain 11 158 2.0E-38 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 trd_1196 2f9d3191375027e55b98a21f4057bc30 319 SUPERFAMILY SSF56300 49 290 7.06E-27 T 13-10-2018 trd_1196 2f9d3191375027e55b98a21f4057bc30 319 Pfam PF00149 Calcineurin-like phosphoesterase 50 217 5.3E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_1196 2f9d3191375027e55b98a21f4057bc30 319 Gene3D G3DSA:3.60.21.10 49 232 8.3E-16 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_A0331 9ff1a22e7732a049b07e7b18a39d833e 370 Gene3D G3DSA:3.40.190.10 150 252 6.4E-31 T 13-10-2018 trd_A0331 9ff1a22e7732a049b07e7b18a39d833e 370 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 96 254 1.2E-7 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF trd_A0331 9ff1a22e7732a049b07e7b18a39d833e 370 SUPERFAMILY SSF53850 79 351 4.21E-35 T 13-10-2018 trd_A0331 9ff1a22e7732a049b07e7b18a39d833e 370 Gene3D G3DSA:3.40.190.10 95 292 6.4E-31 T 13-10-2018 trd_A0331 9ff1a22e7732a049b07e7b18a39d833e 370 Gene3D G3DSA:1.10.8.450 293 326 6.4E-31 T 13-10-2018 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 101 327 8.0E-41 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.10.10 261 339 5.7E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.10.10 179 254 3.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 SUPERFAMILY SSF88946 67 176 2.09E-52 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 314 325 2.3E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 299 314 2.3E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 154 162 2.3E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 278 290 2.3E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 130 143 2.3E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF04545 Sigma-70, region 4 275 327 1.2E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF04539 Sigma-70 region 3 187 260 5.2E-23 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 SUPERFAMILY SSF88659 237 336 4.3E-29 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 299 325 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF04542 Sigma-70 region 2 106 175 6.1E-23 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 130 143 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 SUPERFAMILY SSF88659 179 253 3.97E-19 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.601.10 102 178 4.9E-50 T 13-10-2018 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.601.10 66 101 3.3E-9 T 13-10-2018 trd_1265 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF00140 Sigma-70 factor, region 1.2 68 100 5.7E-16 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 1.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 3.7E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 3.7E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 3.7E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0298 82573249aebbaa94585d4f9e812ac488 273 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 256 2.3E-56 T 13-10-2018 trd_0298 82573249aebbaa94585d4f9e812ac488 273 Gene3D G3DSA:3.40.50.720 1 263 2.0E-75 T 13-10-2018 trd_0298 82573249aebbaa94585d4f9e812ac488 273 SUPERFAMILY SSF51735 11 259 7.83E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0250 b17f53bf4478b41619423394ce30ef7b 416 SUPERFAMILY SSF53850 63 295 2.58E-40 T 13-10-2018 trd_A0250 b17f53bf4478b41619423394ce30ef7b 416 Gene3D G3DSA:3.40.190.10 199 403 1.2E-38 T 13-10-2018 trd_A0250 b17f53bf4478b41619423394ce30ef7b 416 Gene3D G3DSA:3.40.190.10 61 152 5.1E-16 T 13-10-2018 trd_A0250 b17f53bf4478b41619423394ce30ef7b 416 Pfam PF13379 NMT1-like family 60 298 7.6E-49 T 13-10-2018 trd_A0408 c4cffb2f473df3c8d4e7d3c83934c2cd 174 SUPERFAMILY SSF51283 25 174 8.45E-33 T 13-10-2018 IPR036157 dUTPase-like superfamily trd_A0408 c4cffb2f473df3c8d4e7d3c83934c2cd 174 Pfam PF00692 dUTPase 84 160 4.3E-12 T 13-10-2018 IPR029054 dUTPase-like trd_A0408 c4cffb2f473df3c8d4e7d3c83934c2cd 174 Gene3D G3DSA:2.70.40.10 7 174 6.5E-30 T 13-10-2018 IPR036157 dUTPase-like superfamily trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SUPERFAMILY SSF52172 31 160 2.13E-31 T 13-10-2018 IPR011006 CheY-like superfamily trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 ProSitePatterns PS00622 LuxR-type HTH domain signature. 204 231 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SMART SM00421 187 244 8.6E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Pfam PF00196 Bacterial regulatory proteins, luxR family 189 242 9.1E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Pfam PF00072 Response regulator receiver domain 34 145 4.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 220 232 2.7E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 204 2.7E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 220 2.7E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SUPERFAMILY SSF46894 179 250 7.14E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SMART SM00448 32 145 7.5E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1185 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Gene3D G3DSA:3.40.50.12740 32 250 8.5E-61 T 13-10-2018 trd_0460 69a977631f1e2f7389685d4cfefec874 580 PIRSF PIRSF003128 1 569 1.3E-176 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 trd_0460 69a977631f1e2f7389685d4cfefec874 580 SUPERFAMILY SSF52540 1 519 2.17E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0460 69a977631f1e2f7389685d4cfefec874 580 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 519 9.8E-20 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal trd_0460 69a977631f1e2f7389685d4cfefec874 580 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 564 3.2E-170 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 trd_0460 69a977631f1e2f7389685d4cfefec874 580 Gene3D G3DSA:3.40.50.300 1 273 5.2E-51 T 13-10-2018 trd_0460 69a977631f1e2f7389685d4cfefec874 580 Gene3D G3DSA:3.40.50.300 274 565 8.7E-57 T 13-10-2018 trd_0820 eeb7e244b6567defc54cc942d3b50d79 256 Gene3D G3DSA:3.60.140.10 15 255 1.0E-71 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily trd_0820 eeb7e244b6567defc54cc942d3b50d79 256 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 40 255 2.3E-47 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase trd_0820 eeb7e244b6567defc54cc942d3b50d79 256 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 42 253 1.4E-60 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase trd_0820 eeb7e244b6567defc54cc942d3b50d79 256 SUPERFAMILY SSF64438 12 255 1.26E-65 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic trd_0816 e4e93cb42ad7454171a32681f28dec71 166 Gene3D G3DSA:3.10.580.10 1 161 8.2E-42 T 13-10-2018 trd_0816 e4e93cb42ad7454171a32681f28dec71 166 SUPERFAMILY SSF54631 4 147 2.65E-37 T 13-10-2018 trd_0816 e4e93cb42ad7454171a32681f28dec71 166 SMART SM00116 14 62 5.6E-12 T 13-10-2018 IPR000644 CBS domain trd_0816 e4e93cb42ad7454171a32681f28dec71 166 SMART SM00116 103 151 3.2E-8 T 13-10-2018 IPR000644 CBS domain trd_0816 e4e93cb42ad7454171a32681f28dec71 166 Pfam PF00571 CBS domain 7 59 2.9E-14 T 13-10-2018 IPR000644 CBS domain trd_0816 e4e93cb42ad7454171a32681f28dec71 166 Pfam PF00571 CBS domain 97 147 1.9E-14 T 13-10-2018 IPR000644 CBS domain trd_1008 13b383a4f21864a42a7b6f2049284a3e 711 Pfam PF04234 CopC domain 35 131 6.5E-19 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 trd_1008 13b383a4f21864a42a7b6f2049284a3e 711 SUPERFAMILY SSF81296 34 131 1.12E-17 T 13-10-2018 IPR014756 Immunoglobulin E-set trd_1008 13b383a4f21864a42a7b6f2049284a3e 711 Gene3D G3DSA:2.60.40.1220 35 136 1.2E-18 T 13-10-2018 trd_0749 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.90.650.10 25 349 4.2E-130 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF56042 195 421 1.09E-54 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF56042 569 730 1.92E-34 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 Pfam PF02769 AIR synthase related protein, C-terminal domain 571 706 6.5E-16 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_0749 caed10f54a6124c5e73358a654c76f96 733 Pfam PF02769 AIR synthase related protein, C-terminal domain 197 344 1.2E-31 T 13-10-2018 IPR010918 PurM-like, C-terminal domain trd_0749 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF55326 391 561 2.88E-55 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 PIRSF PIRSF001587 3 731 5.9E-287 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0749 caed10f54a6124c5e73358a654c76f96 733 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 733 295.933 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0749 caed10f54a6124c5e73358a654c76f96 733 Pfam PF00586 AIR synthase related protein, N-terminal domain 83 184 9.2E-23 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_0749 caed10f54a6124c5e73358a654c76f96 733 Pfam PF00586 AIR synthase related protein, N-terminal domain 437 553 1.5E-23 T 13-10-2018 IPR016188 PurM-like, N-terminal domain trd_0749 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.30.1330.10 387 557 6.4E-63 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF55326 10 186 9.27E-47 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.30.1330.10 40 187 4.2E-130 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily trd_0749 caed10f54a6124c5e73358a654c76f96 733 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 13 719 8.5E-272 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 trd_0749 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.90.650.10 566 732 3.2E-36 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily trd_A0611 07c8c5b021d0944a642df349118bcade 217 SUPERFAMILY SSF88659 127 211 2.8E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_A0611 07c8c5b021d0944a642df349118bcade 217 Pfam PF08281 Sigma-70, region 4 151 204 9.0E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 trd_A0611 07c8c5b021d0944a642df349118bcade 217 Gene3D G3DSA:1.10.1740.10 31 111 9.8E-33 T 13-10-2018 trd_A0611 07c8c5b021d0944a642df349118bcade 217 SUPERFAMILY SSF88946 27 129 1.07E-31 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0611 07c8c5b021d0944a642df349118bcade 217 Pfam PF04542 Sigma-70 region 2 49 118 8.0E-24 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 trd_A0611 07c8c5b021d0944a642df349118bcade 217 Gene3D G3DSA:1.10.10.10 112 209 2.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0611 07c8c5b021d0944a642df349118bcade 217 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 45 208 2.4E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 trd_1177 021e2bd2699f3c2d9310d00c2bc3d6da 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 239 1.7E-53 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 trd_1177 021e2bd2699f3c2d9310d00c2bc3d6da 252 Gene3D G3DSA:3.40.1390.30 98 223 8.8E-73 T 13-10-2018 trd_1177 021e2bd2699f3c2d9310d00c2bc3d6da 252 SUPERFAMILY SSF102705 4 251 1.09E-64 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily trd_1177 021e2bd2699f3c2d9310d00c2bc3d6da 252 Gene3D G3DSA:3.40.1390.30 7 240 8.8E-73 T 13-10-2018 trd_1177 021e2bd2699f3c2d9310d00c2bc3d6da 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 250 3.2E-53 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 trd_0966 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0966 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 SUPERFAMILY SSF52080 4 145 4.84E-43 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily trd_0966 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 145 20.369 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 trd_0966 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 143 6.2E-32 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P trd_0966 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 5.6E-46 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0966 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 Gene3D G3DSA:3.100.10.10 66 146 4.3E-21 T 13-10-2018 trd_0919 487af021872a689038cc417516cd55d9 365 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 10 334 4.4E-120 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 trd_0919 487af021872a689038cc417516cd55d9 365 Gene3D G3DSA:1.20.120.420 8 151 1.8E-32 T 13-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 trd_0919 487af021872a689038cc417516cd55d9 365 Gene3D G3DSA:3.40.50.10470 152 349 1.9E-68 T 13-10-2018 trd_0919 487af021872a689038cc417516cd55d9 365 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 35 335 1.9E-102 T 13-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 trd_0919 487af021872a689038cc417516cd55d9 365 Pfam PF01008 Initiation factor 2 subunit family 50 335 2.7E-76 T 13-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 trd_0919 487af021872a689038cc417516cd55d9 365 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 346 36.689 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 trd_0919 487af021872a689038cc417516cd55d9 365 SUPERFAMILY SSF100950 8 338 1.05E-110 T 13-10-2018 IPR037171 NagB/RpiA transferase-like trd_1737 30f3c1882be945a803ea06bac3a4aaa3 124 Pfam PF01594 AI-2E family transporter 4 82 2.4E-11 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like trd_0408 3df16180dfc7a7f24daf0df2f9ca8a90 234 SUPERFAMILY SSF110087 107 233 1.31E-45 T 13-10-2018 IPR036182 Copper chaperone PCuAC superfamily trd_0408 3df16180dfc7a7f24daf0df2f9ca8a90 234 Pfam PF04314 Copper chaperone PCu(A)C 119 227 1.8E-43 T 13-10-2018 IPR007410 Copper chaperone PCuAC trd_0408 3df16180dfc7a7f24daf0df2f9ca8a90 234 Gene3D G3DSA:2.60.40.1890 123 234 3.0E-41 T 13-10-2018 IPR036182 Copper chaperone PCuAC superfamily trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 Gene3D G3DSA:3.30.420.40 1 88 3.5E-26 T 13-10-2018 trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 SUPERFAMILY SSF53067 124 251 8.03E-35 T 13-10-2018 trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 Pfam PF03309 Type III pantothenate kinase 2 206 5.6E-62 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 Gene3D G3DSA:3.30.420.40 91 257 5.4E-55 T 13-10-2018 trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 SUPERFAMILY SSF53067 2 122 1.62E-29 T 13-10-2018 trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 32.492 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 trd_1062 e05305e82f9925d3f911720ed7e8b0f8 259 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 249 1.9E-66 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 trd_1113 5785f2d53f2e880339a2615386baffcb 638 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 55 613 2.1E-223 T 13-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily trd_1113 5785f2d53f2e880339a2615386baffcb 638 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 80 550 1.6E-60 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 trd_1113 5785f2d53f2e880339a2615386baffcb 638 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 532 552 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site trd_1113 5785f2d53f2e880339a2615386baffcb 638 Pfam PF00474 Sodium:solute symporter family 80 365 9.7E-37 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 trd_1113 5785f2d53f2e880339a2615386baffcb 638 Pfam PF00474 Sodium:solute symporter family 435 550 6.2E-22 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 trd_1094 f50afcea0d358830e4f8244140bb8594 253 SUPERFAMILY SSF53335 70 232 1.94E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1094 f50afcea0d358830e4f8244140bb8594 253 Pfam PF13489 Methyltransferase domain 95 218 2.3E-8 T 13-10-2018 trd_1094 f50afcea0d358830e4f8244140bb8594 253 Gene3D G3DSA:3.40.50.150 56 230 3.8E-35 T 13-10-2018 trd_0660 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 68 296 2.6E-35 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 trd_0660 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 Gene3D G3DSA:3.40.50.2000 158 341 9.2E-46 T 13-10-2018 trd_0660 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 Gene3D G3DSA:3.40.50.2000 3 144 5.0E-35 T 13-10-2018 trd_0660 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 4 337 3.6E-41 T 13-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 trd_0660 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 SUPERFAMILY SSF53756 2 338 1.95E-83 T 13-10-2018 trd_A0329 aad14ac8e13d7514a3fed5ec1ab0b5fb 266 Pfam PF00005 ABC transporter 28 171 1.3E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0329 aad14ac8e13d7514a3fed5ec1ab0b5fb 266 SMART SM00382 37 231 2.6E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0329 aad14ac8e13d7514a3fed5ec1ab0b5fb 266 SUPERFAMILY SSF52540 14 227 6.97E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0329 aad14ac8e13d7514a3fed5ec1ab0b5fb 266 Gene3D G3DSA:3.40.50.300 11 257 6.8E-66 T 13-10-2018 trd_A0329 aad14ac8e13d7514a3fed5ec1ab0b5fb 266 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_0033 8edd34336463ff7b4ac1fdb577395105 420 SMART SM00116 204 253 2.7E-6 T 13-10-2018 IPR000644 CBS domain trd_0033 8edd34336463ff7b4ac1fdb577395105 420 SMART SM00116 267 315 2.4 T 13-10-2018 IPR000644 CBS domain trd_0033 8edd34336463ff7b4ac1fdb577395105 420 Pfam PF00571 CBS domain 261 315 2.6E-6 T 13-10-2018 IPR000644 CBS domain trd_0033 8edd34336463ff7b4ac1fdb577395105 420 Pfam PF00571 CBS domain 196 253 1.1E-7 T 13-10-2018 IPR000644 CBS domain trd_0033 8edd34336463ff7b4ac1fdb577395105 420 Gene3D G3DSA:3.30.465.10 323 408 1.5E-25 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_0033 8edd34336463ff7b4ac1fdb577395105 420 SUPERFAMILY SSF56176 328 416 2.73E-21 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_0033 8edd34336463ff7b4ac1fdb577395105 420 Pfam PF03471 Transporter associated domain 332 407 7.4E-22 T 13-10-2018 IPR005170 Transporter-associated domain trd_0033 8edd34336463ff7b4ac1fdb577395105 420 Gene3D G3DSA:3.10.580.10 175 322 1.7E-56 T 13-10-2018 trd_0033 8edd34336463ff7b4ac1fdb577395105 420 SMART SM01091 330 408 5.3E-26 T 13-10-2018 IPR005170 Transporter-associated domain trd_0033 8edd34336463ff7b4ac1fdb577395105 420 SUPERFAMILY SSF54631 190 331 8.72E-39 T 13-10-2018 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 SUPERFAMILY SSF52540 111 382 2.42E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 150 313 7.0E-27 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 Gene3D G3DSA:1.10.8.60 316 384 1.6E-11 T 13-10-2018 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 Pfam PF01434 Peptidase family M41 376 502 5.5E-36 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 SMART SM00382 146 316 2.1E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 Gene3D G3DSA:1.20.58.760 388 574 1.4E-52 T 13-10-2018 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 Gene3D G3DSA:3.40.50.300 102 315 7.4E-43 T 13-10-2018 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 ProSitePatterns PS00674 AAA-protein family signature. 284 302 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 trd_A0888 66bd34dfd746842780f3b5c9e8db81fc 632 SUPERFAMILY SSF140990 396 575 3.27E-47 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 trd_0501 a7ecd9b08d018b5ea32934ee10a08846 506 Gene3D G3DSA:3.50.50.60 2 73 1.7E-9 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0501 a7ecd9b08d018b5ea32934ee10a08846 506 SUPERFAMILY SSF51905 5 474 3.02E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0501 a7ecd9b08d018b5ea32934ee10a08846 506 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 62 2.0E-9 T 13-10-2018 trd_1723 51366abc5aed4cc6c13f7021d9daf18d 169 Pfam PF02542 YgbB family 2 156 5.0E-59 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 trd_1723 51366abc5aed4cc6c13f7021d9daf18d 169 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 34.614 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 trd_1723 51366abc5aed4cc6c13f7021d9daf18d 169 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 156 1.3E-58 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 trd_1723 51366abc5aed4cc6c13f7021d9daf18d 169 Gene3D G3DSA:3.30.1330.50 1 166 8.5E-65 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 trd_1723 51366abc5aed4cc6c13f7021d9daf18d 169 SUPERFAMILY SSF69765 1 158 2.49E-61 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 trd_1723 51366abc5aed4cc6c13f7021d9daf18d 169 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 trd_A0575 2d2bcc1316d102cb93ecdd47a6948f4d 427 SUPERFAMILY SSF103473 15 401 5.75E-43 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0575 2d2bcc1316d102cb93ecdd47a6948f4d 427 Pfam PF05977 Transmembrane secretion effector 10 392 2.9E-53 T 13-10-2018 IPR010290 Transmembrane secretion effector trd_A0575 2d2bcc1316d102cb93ecdd47a6948f4d 427 Gene3D G3DSA:1.20.1250.20 11 393 2.2E-36 T 13-10-2018 trd_A0011 724cda6f4e0ea31563560c3021c774d0 431 Gene3D G3DSA:3.40.710.10 1 314 4.7E-80 T 13-10-2018 trd_A0011 724cda6f4e0ea31563560c3021c774d0 431 Pfam PF00144 Beta-lactamase 7 302 7.2E-62 T 13-10-2018 IPR001466 Beta-lactamase-related trd_A0011 724cda6f4e0ea31563560c3021c774d0 431 SUPERFAMILY SSF56601 13 305 8.72E-75 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_1078 32bb3a60c714b4cd5f80e3808200059a 166 Gene3D G3DSA:3.30.70.640 1 161 2.6E-71 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1078 32bb3a60c714b4cd5f80e3808200059a 166 SUPERFAMILY SSF55040 11 155 3.27E-60 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1078 32bb3a60c714b4cd5f80e3808200059a 166 Pfam PF01967 MoaC family 15 150 1.6E-56 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1078 32bb3a60c714b4cd5f80e3808200059a 166 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 37.825 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_1078 32bb3a60c714b4cd5f80e3808200059a 166 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 3.9E-67 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 trd_A0020 90f850711a10abd4575c3fd1f468510a 149 SUPERFAMILY SSF49764 24 147 1.62E-33 T 13-10-2018 IPR008978 HSP20-like chaperone trd_A0020 90f850711a10abd4575c3fd1f468510a 149 Pfam PF00011 Hsp20/alpha crystallin family 44 146 8.9E-19 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain trd_A0020 90f850711a10abd4575c3fd1f468510a 149 Gene3D G3DSA:2.60.40.790 2 147 3.5E-33 T 13-10-2018 IPR008978 HSP20-like chaperone trd_0760 885f8605ea86d8f6470a9da0f7a1fe5f 298 Hamap MF_00188 Protease HtpX [htpX]. 14 290 26.243 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 trd_0760 885f8605ea86d8f6470a9da0f7a1fe5f 298 Gene3D G3DSA:3.30.2010.10 73 159 1.1E-28 T 13-10-2018 trd_0760 885f8605ea86d8f6470a9da0f7a1fe5f 298 Pfam PF01435 Peptidase family M48 78 290 2.4E-38 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 trd_1535 664ae2f6548e48e276db04bc8bd31264 263 SUPERFAMILY SSF53448 4 225 1.13E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1535 664ae2f6548e48e276db04bc8bd31264 263 Gene3D G3DSA:3.90.550.10 1 258 1.3E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1535 664ae2f6548e48e276db04bc8bd31264 263 Pfam PF00535 Glycosyl transferase family 2 6 173 4.9E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 trd_A0640 1119a064778f7500aba4ecce7c0b24aa 220 Gene3D G3DSA:2.40.260.10 42 219 6.3E-31 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0640 1119a064778f7500aba4ecce7c0b24aa 220 TIGRFAM TIGR01076 sortase_fam: sortase 76 205 1.0E-10 T 13-10-2018 IPR005754 Sortase family trd_A0640 1119a064778f7500aba4ecce7c0b24aa 220 Pfam PF04203 Sortase family 77 215 1.1E-21 T 13-10-2018 IPR005754 Sortase family trd_A0640 1119a064778f7500aba4ecce7c0b24aa 220 SUPERFAMILY SSF63817 73 216 4.71E-22 T 13-10-2018 IPR023365 Sortase domain superfamily trd_A0753 14caf6b282eb53bbe94a6b0ea62189b0 271 Pfam PF14344 Domain of unknown function (DUF4397) 29 144 3.4E-26 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 trd_A0323 69c6630345a916b70f8388f4aac5119f 614 PIRSF PIRSF002741 77 600 3.9E-84 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_A0323 69c6630345a916b70f8388f4aac5119f 614 Gene3D G3DSA:3.90.76.10 129 253 1.1E-130 T 13-10-2018 trd_A0323 69c6630345a916b70f8388f4aac5119f 614 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 139 521 1.6E-84 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_A0323 69c6630345a916b70f8388f4aac5119f 614 SUPERFAMILY SSF53850 96 595 5.43E-113 T 13-10-2018 trd_A0323 69c6630345a916b70f8388f4aac5119f 614 Gene3D G3DSA:3.40.190.10 126 586 1.1E-130 T 13-10-2018 trd_A0323 69c6630345a916b70f8388f4aac5119f 614 Gene3D G3DSA:3.10.105.10 356 575 1.1E-130 T 13-10-2018 trd_1574 c6d7988f11ff0cf2ab756f897e69af5c 292 Pfam PF00296 Luciferase-like monooxygenase 14 252 1.8E-50 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_1574 c6d7988f11ff0cf2ab756f897e69af5c 292 SUPERFAMILY SSF51679 1 285 1.96E-60 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1574 c6d7988f11ff0cf2ab756f897e69af5c 292 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 21 263 4.5E-92 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted trd_1574 c6d7988f11ff0cf2ab756f897e69af5c 292 Gene3D G3DSA:3.20.20.30 1 286 8.6E-72 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1843 24777da236654fc82fa0cb7ae5515bb3 544 Pfam PF03023 MviN-like protein 55 493 7.9E-64 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_1843 24777da236654fc82fa0cb7ae5515bb3 544 PRINTS PR01806 Virulence factor MviN signature 283 309 2.0E-6 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_1843 24777da236654fc82fa0cb7ae5515bb3 544 PRINTS PR01806 Virulence factor MviN signature 76 92 2.0E-6 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_1843 24777da236654fc82fa0cb7ae5515bb3 544 PRINTS PR01806 Virulence factor MviN signature 161 185 2.0E-6 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_1843 24777da236654fc82fa0cb7ae5515bb3 544 PRINTS PR01806 Virulence factor MviN signature 185 206 2.0E-6 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_1843 24777da236654fc82fa0cb7ae5515bb3 544 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 28 535 3.3E-71 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 230 1.8E-90 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 PIRSF PIRSF002155 1 230 5.6E-67 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 Gene3D G3DSA:3.30.190.20 21 228 4.6E-75 T 13-10-2018 trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 SUPERFAMILY SSF56808 6 229 5.62E-73 T 13-10-2018 IPR023674 Ribosomal protein L1-like trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 Gene3D G3DSA:3.40.50.790 68 162 4.6E-75 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 Pfam PF00687 Ribosomal protein L1p/L10e family 31 223 6.1E-45 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein trd_0682 8071ce5f1f13c20022ae908357aa7db0 241 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 232 39.485 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 trd_0544 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 140 294 5.0E-44 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain trd_0544 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 139 294 4.2E-37 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain trd_0544 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 Gene3D G3DSA:1.10.260.150 111 383 5.1E-78 T 13-10-2018 trd_A0155 e7bd592683e915e6c51f0ed8d31b0665 770 SUPERFAMILY SSF52172 6 130 3.13E-33 T 13-10-2018 IPR011006 CheY-like superfamily trd_A0155 e7bd592683e915e6c51f0ed8d31b0665 770 Pfam PF00072 Response regulator receiver domain 8 120 5.8E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0155 e7bd592683e915e6c51f0ed8d31b0665 770 Gene3D G3DSA:3.40.50.12740 6 171 3.8E-40 T 13-10-2018 trd_A0155 e7bd592683e915e6c51f0ed8d31b0665 770 SMART SM00448 6 119 6.2E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1859 60ed439525375dfbac02682a971c142d 438 SUPERFAMILY SSF103473 23 436 6.15E-38 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1859 60ed439525375dfbac02682a971c142d 438 Pfam PF07690 Major Facilitator Superfamily 31 398 2.8E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1859 60ed439525375dfbac02682a971c142d 438 Gene3D G3DSA:1.20.1250.20 22 431 9.7E-36 T 13-10-2018 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.3E-55 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 123 28.643 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 Gene3D G3DSA:1.10.8.50 1 72 8.3E-31 T 13-10-2018 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 SUPERFAMILY SSF46946 2 121 1.16E-48 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 Gene3D G3DSA:4.10.910.10 73 125 1.4E-25 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 PIRSF PIRSF002134 1 125 5.1E-49 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0960 74d5bf348e7baecd11253dfcd6ce6faf 128 Pfam PF00416 Ribosomal protein S13/S18 3 109 7.6E-35 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_1260 1146adfaf60bafbec824b1a09324586a 300 SUPERFAMILY SSF52096 26 285 8.5E-77 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_1260 1146adfaf60bafbec824b1a09324586a 300 Pfam PF01039 Carboxyl transferase domain 57 242 1.3E-13 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 trd_1260 1146adfaf60bafbec824b1a09324586a 300 Gene3D G3DSA:3.90.226.10 26 282 7.1E-80 T 13-10-2018 trd_1260 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 3.7E-29 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1260 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 3.7E-29 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1260 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 3.7E-29 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1260 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 3.7E-29 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1260 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 3.7E-29 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1260 1146adfaf60bafbec824b1a09324586a 300 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 10 281 1.4E-101 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_1260 1146adfaf60bafbec824b1a09324586a 300 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 283 37.24 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 trd_A0711 5433e238633b442e67e7ce3522390e1c 560 Gene3D G3DSA:3.20.20.80 2 299 3.3E-74 T 13-10-2018 trd_A0711 5433e238633b442e67e7ce3522390e1c 560 SUPERFAMILY SSF51445 3 302 1.81E-59 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_A0711 5433e238633b442e67e7ce3522390e1c 560 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 5 215 7.8E-10 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 trd_1042 acf2658badb575b3d8cc99fffe50fb9c 234 SUPERFAMILY SSF102588 10 230 1.83E-57 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_1042 acf2658badb575b3d8cc99fffe50fb9c 234 Gene3D G3DSA:3.40.50.10320 2 233 6.0E-80 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_1042 acf2658badb575b3d8cc99fffe50fb9c 234 Pfam PF02585 GlcNAc-PI de-N-acetylase 13 139 5.6E-31 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 trd_A0603 6b44f0f1a66d78294a0b8f75b19d13d0 273 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 37 233 5.3E-38 T 13-10-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 trd_A0603 6b44f0f1a66d78294a0b8f75b19d13d0 273 Pfam PF02361 Cobalt transport protein 33 238 2.5E-30 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component trd_A0121 24f524131d8dc30fb47bdbb78c9a0f61 464 Pfam PF07687 Peptidase dimerisation domain 199 357 3.6E-20 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain trd_A0121 24f524131d8dc30fb47bdbb78c9a0f61 464 Pfam PF01546 Peptidase family M20/M25/M40 86 454 8.1E-36 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 trd_A0121 24f524131d8dc30fb47bdbb78c9a0f61 464 Gene3D G3DSA:3.40.630.10 16 448 1.1E-156 T 13-10-2018 trd_A0121 24f524131d8dc30fb47bdbb78c9a0f61 464 Gene3D G3DSA:3.30.70.360 200 371 1.1E-156 T 13-10-2018 trd_A0121 24f524131d8dc30fb47bdbb78c9a0f61 464 SUPERFAMILY SSF53187 6 458 3.01E-62 T 13-10-2018 trd_1100 dff05bceeb2eda6e2491ad98b92d23ad 479 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 231 242 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_1100 dff05bceeb2eda6e2491ad98b92d23ad 479 SUPERFAMILY SSF54862 160 248 8.38E-5 T 13-10-2018 trd_0066 c5cbedff840e715e05834e9fcc632f49 239 Pfam PF03799 Cell division protein FtsQ 114 226 6.5E-6 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB trd_0066 c5cbedff840e715e05834e9fcc632f49 239 Pfam PF08478 POTRA domain, FtsQ-type 44 109 8.4E-13 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type trd_1012 41cca7b4842fc5992c46f28c740cacac 419 Gene3D G3DSA:3.40.50.300 149 388 2.7E-50 T 13-10-2018 trd_1012 41cca7b4842fc5992c46f28c740cacac 419 Gene3D G3DSA:3.40.50.2300 1 129 9.3E-29 T 13-10-2018 trd_1012 41cca7b4842fc5992c46f28c740cacac 419 SMART SM00448 1 114 4.8E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1012 41cca7b4842fc5992c46f28c740cacac 419 SUPERFAMILY SSF52172 1 119 8.97E-29 T 13-10-2018 IPR011006 CheY-like superfamily trd_1012 41cca7b4842fc5992c46f28c740cacac 419 Pfam PF00072 Response regulator receiver domain 3 115 3.4E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1012 41cca7b4842fc5992c46f28c740cacac 419 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 153 342 1.2E-9 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain trd_1012 41cca7b4842fc5992c46f28c740cacac 419 SUPERFAMILY SSF52540 150 389 2.95E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0047 eff75297cd97b71ac46534c14a2669b9 167 Pfam PF00583 Acetyltransferase (GNAT) family 31 137 9.9E-14 T 13-10-2018 IPR000182 GNAT domain trd_0047 eff75297cd97b71ac46534c14a2669b9 167 SUPERFAMILY SSF55729 19 160 7.98E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_0047 eff75297cd97b71ac46534c14a2669b9 167 Gene3D G3DSA:3.40.630.30 11 165 6.4E-29 T 13-10-2018 trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 SUPERFAMILY SSF47741 93 162 4.84E-35 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 67 6.6E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Gene3D G3DSA:1.10.150.120 84 164 3.6E-35 T 13-10-2018 trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Gene3D G3DSA:3.10.20.30 3 83 1.2E-29 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Pfam PF01799 [2Fe-2S] binding domain 81 154 5.1E-33 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 trd_0578 e50fd85e9d8a3b4d4d9c392ffca73d95 164 SUPERFAMILY SSF54292 11 86 3.28E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 trd_1489 bec2897c24f732e0d9c5f70745a8cf88 407 Gene3D G3DSA:1.20.1250.20 218 398 1.5E-22 T 13-10-2018 trd_1489 bec2897c24f732e0d9c5f70745a8cf88 407 Pfam PF07690 Major Facilitator Superfamily 35 304 2.7E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1489 bec2897c24f732e0d9c5f70745a8cf88 407 SUPERFAMILY SSF103473 19 401 8.63E-49 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1489 bec2897c24f732e0d9c5f70745a8cf88 407 Gene3D G3DSA:1.20.1250.20 18 202 2.5E-16 T 13-10-2018 trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 Gene3D G3DSA:3.40.50.2300 1 118 2.3E-40 T 13-10-2018 trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 Pfam PF00072 Response regulator receiver domain 4 114 4.6E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 Gene3D G3DSA:1.10.10.10 119 225 1.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 SUPERFAMILY SSF52172 1 127 2.13E-43 T 13-10-2018 IPR011006 CheY-like superfamily trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 SMART SM00448 2 113 1.0E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 SUPERFAMILY SSF46894 124 223 2.58E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 SMART SM00862 147 222 1.9E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_A0608 6a259eac2270ba22e1a8e6090989bb4f 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 222 2.0E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 Gene3D G3DSA:3.50.50.60 1 370 4.1E-72 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 SUPERFAMILY SSF51905 4 379 8.08E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 SUPERFAMILY SSF54373 183 284 2.94E-17 T 13-10-2018 trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 310 8.2E-12 T 13-10-2018 trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 8.2E-12 T 13-10-2018 trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 8.2E-12 T 13-10-2018 trd_0044 7ebc839623d8372d7fcbb081f8a6ef1d 432 Pfam PF12831 FAD dependent oxidoreductase 7 147 2.4E-8 T 13-10-2018 IPR039649 Digeranylgeranylglycerophospholipid reductase, N-terminal trd_0871 fa5aef93baca98d1fdbfabe59fd8d139 127 SUPERFAMILY SSF55298 2 126 1.88E-50 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 trd_0871 fa5aef93baca98d1fdbfabe59fd8d139 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 125 6.0E-50 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 trd_0871 fa5aef93baca98d1fdbfabe59fd8d139 127 Pfam PF01042 Endoribonuclease L-PSP 10 126 5.2E-43 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 trd_0871 fa5aef93baca98d1fdbfabe59fd8d139 127 Gene3D G3DSA:3.30.1330.40 1 127 9.4E-57 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 trd_0794 0c11c7906b7c76354f6d8016311a9b80 329 Gene3D G3DSA:3.40.50.720 125 302 6.0E-105 T 13-10-2018 trd_0794 0c11c7906b7c76354f6d8016311a9b80 329 Gene3D G3DSA:3.30.1780.10 4 324 6.0E-105 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 trd_0794 0c11c7906b7c76354f6d8016311a9b80 329 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 2 317 4.0E-79 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 trd_0794 0c11c7906b7c76354f6d8016311a9b80 329 PIRSF PIRSF001439 1 329 1.6E-85 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 trd_0794 0c11c7906b7c76354f6d8016311a9b80 329 SUPERFAMILY SSF51735 1 328 1.2E-95 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 108 134 2.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 314 333 2.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 136 155 2.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 211 234 2.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 161 182 2.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 Pfam PF01566 Natural resistance-associated macrophage protein 50 398 1.2E-126 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 29 392 8.2E-105 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0239 c5568a5019d354273b7dd0c9b774b13c 429 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 20 424 37.96 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 trd_A0795 bee6e5a61af83240946cd526a540bd2a 525 Gene3D G3DSA:1.20.1740.10 25 517 1.1E-22 T 13-10-2018 trd_A0795 bee6e5a61af83240946cd526a540bd2a 525 Pfam PF13520 Amino acid permease 28 479 6.9E-21 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_A0795 bee6e5a61af83240946cd526a540bd2a 525 PIRSF PIRSF006060 8 516 8.5E-28 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 trd_1212 3b3c78aab3134e9001b3975c92b3840d 262 Pfam PF13478 XdhC Rossmann domain 94 236 2.7E-45 T 13-10-2018 IPR027051 XdhC Rossmann domain trd_1212 3b3c78aab3134e9001b3975c92b3840d 262 SUPERFAMILY SSF51905 75 151 8.39E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1212 3b3c78aab3134e9001b3975c92b3840d 262 Pfam PF02625 XdhC and CoxI family 13 73 1.0E-12 T 13-10-2018 IPR003777 XdhC- CoxI trd_1212 3b3c78aab3134e9001b3975c92b3840d 262 Gene3D G3DSA:3.40.50.720 93 242 1.0E-54 T 13-10-2018 trd_1716 fb088792505a0b7575652162a71a00b4 249 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 7 190 2.7E-55 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 trd_1716 fb088792505a0b7575652162a71a00b4 249 Pfam PF01121 Dephospho-CoA kinase 6 183 1.5E-57 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 trd_1716 fb088792505a0b7575652162a71a00b4 249 Gene3D G3DSA:3.40.50.300 1 202 4.4E-80 T 13-10-2018 trd_1716 fb088792505a0b7575652162a71a00b4 249 SUPERFAMILY SSF52540 4 201 1.26E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1716 fb088792505a0b7575652162a71a00b4 249 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 5 199 27.884 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 trd_A0184 2a081eec3f1cc6c06f4d93d0ee7639dc 274 Pfam PF00005 ABC transporter 36 180 3.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0184 2a081eec3f1cc6c06f4d93d0ee7639dc 274 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0184 2a081eec3f1cc6c06f4d93d0ee7639dc 274 SMART SM00382 45 268 2.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0184 2a081eec3f1cc6c06f4d93d0ee7639dc 274 Gene3D G3DSA:3.40.50.300 17 266 1.1E-67 T 13-10-2018 trd_A0184 2a081eec3f1cc6c06f4d93d0ee7639dc 274 SUPERFAMILY SSF52540 16 241 1.01E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1214 d4a059080eeddcb0b06650a3fcfb5372 169 PRINTS PR00502 NUDIX hydrolase family signature 85 100 3.7E-8 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 trd_1214 d4a059080eeddcb0b06650a3fcfb5372 169 PRINTS PR00502 NUDIX hydrolase family signature 71 85 3.7E-8 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 trd_1214 d4a059080eeddcb0b06650a3fcfb5372 169 ProSitePatterns PS00893 Nudix box signature. 76 97 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 trd_1214 d4a059080eeddcb0b06650a3fcfb5372 169 SUPERFAMILY SSF55811 10 166 6.36E-41 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_1214 d4a059080eeddcb0b06650a3fcfb5372 169 Gene3D G3DSA:3.90.79.10 42 168 4.9E-39 T 13-10-2018 trd_1214 d4a059080eeddcb0b06650a3fcfb5372 169 Pfam PF00293 NUDIX domain 44 160 1.7E-20 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_1382 d23387eef71be7349f5e99fe040372a6 259 SUPERFAMILY SSF89550 1 197 1.88E-15 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 trd_1382 d23387eef71be7349f5e99fe040372a6 259 Gene3D G3DSA:3.20.20.140 1 254 6.6E-74 T 13-10-2018 trd_1382 d23387eef71be7349f5e99fe040372a6 259 PIRSF PIRSF016557 1 247 1.5E-60 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 trd_A0332 4dd2d490c81f52a6562e125dbe3e76d3 269 Gene3D G3DSA:1.10.3720.10 65 264 6.6E-22 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0332 4dd2d490c81f52a6562e125dbe3e76d3 269 SUPERFAMILY SSF161098 70 254 3.53E-25 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0332 4dd2d490c81f52a6562e125dbe3e76d3 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 267 7.4E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0242 c5df332e850472f318023ca8b39f73ae 158 SUPERFAMILY SSF88697 5 146 1.41E-18 T 13-10-2018 IPR015947 PUA-like superfamily trd_0242 c5df332e850472f318023ca8b39f73ae 158 Pfam PF01878 EVE domain 5 145 2.1E-15 T 13-10-2018 IPR002740 EVE domain trd_0242 c5df332e850472f318023ca8b39f73ae 158 Gene3D G3DSA:3.10.590.10 5 148 2.8E-33 T 13-10-2018 trd_1367 a2e155a29aa073f2cddd91e6ada16ccf 731 Gene3D G3DSA:3.30.565.10 603 728 6.6E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily trd_1367 a2e155a29aa073f2cddd91e6ada16ccf 731 Gene3D G3DSA:3.30.450.40 49 186 7.8E-9 T 13-10-2018 IPR029016 GAF-like domain superfamily trd_1367 a2e155a29aa073f2cddd91e6ada16ccf 731 SMART SM00065 44 191 0.0039 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1367 a2e155a29aa073f2cddd91e6ada16ccf 731 Pfam PF01590 GAF domain 52 179 5.4E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 trd_1367 a2e155a29aa073f2cddd91e6ada16ccf 731 SUPERFAMILY SSF55781 50 183 1.4E-9 T 13-10-2018 trd_1495 282557ff4fea68c6c34636d00d7703d0 337 SUPERFAMILY SSF111331 13 151 8.11E-8 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily trd_1495 282557ff4fea68c6c34636d00d7703d0 337 Pfam PF01513 ATP-NAD kinase 14 161 3.4E-10 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 trd_1568 839ae4674bc5aba2812f4b7ec9f4183b 343 Pfam PF00899 ThiF family 12 245 2.2E-59 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 trd_1568 839ae4674bc5aba2812f4b7ec9f4183b 343 SUPERFAMILY SSF69572 3 330 9.16E-80 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 trd_1568 839ae4674bc5aba2812f4b7ec9f4183b 343 Gene3D G3DSA:3.40.50.720 2 254 3.6E-76 T 13-10-2018 trd_1455 61157dd19e5771b042ae8aa181c6f748 71 Pfam PF04964 Flp/Fap pilin component 27 61 4.1E-8 T 13-10-2018 IPR007047 Flp/Fap pilin component trd_0333 fc5b7c8ffe35e25cdca69f4033c0d511 139 PIRSF PIRSF000178 11 135 2.5E-9 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0333 fc5b7c8ffe35e25cdca69f4033c0d511 139 SUPERFAMILY SSF81343 22 129 9.37E-21 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0333 fc5b7c8ffe35e25cdca69f4033c0d511 139 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 21 121 2.8E-20 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0333 fc5b7c8ffe35e25cdca69f4033c0d511 139 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 23 126 1.3E-20 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_0333 fc5b7c8ffe35e25cdca69f4033c0d511 139 Gene3D G3DSA:1.20.1300.10 26 135 3.9E-15 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 trd_A0809 905e7eb72e1d1d6167626467b55de4c7 625 Pfam PF00583 Acetyltransferase (GNAT) family 267 331 1.9E-5 T 13-10-2018 IPR000182 GNAT domain trd_A0809 905e7eb72e1d1d6167626467b55de4c7 625 SMART SM00382 438 617 2.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0809 905e7eb72e1d1d6167626467b55de4c7 625 Pfam PF00005 ABC transporter 429 565 3.4E-15 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0809 905e7eb72e1d1d6167626467b55de4c7 625 Gene3D G3DSA:3.40.50.300 408 625 1.2E-34 T 13-10-2018 trd_A0809 905e7eb72e1d1d6167626467b55de4c7 625 SUPERFAMILY SSF52540 417 624 1.68E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0809 905e7eb72e1d1d6167626467b55de4c7 625 SUPERFAMILY SSF55729 113 334 2.96E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_1868 6901cabeca503c68c90a3c961bdd37d7 87 Pfam PF01455 HupF/HypC family 29 85 2.3E-10 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC trd_1868 6901cabeca503c68c90a3c961bdd37d7 87 Gene3D G3DSA:2.40.50.970 29 80 6.0E-9 T 13-10-2018 IPR037254 HupF/HypC superfamily trd_1868 6901cabeca503c68c90a3c961bdd37d7 87 SUPERFAMILY SSF159127 29 85 6.8E-10 T 13-10-2018 IPR037254 HupF/HypC superfamily trd_1329 401c1fd7abcc54206afbf5132c843c63 326 Gene3D G3DSA:1.10.150.130 48 132 2.1E-10 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal trd_1329 401c1fd7abcc54206afbf5132c843c63 326 Gene3D G3DSA:1.10.443.10 137 314 2.2E-18 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 trd_1329 401c1fd7abcc54206afbf5132c843c63 326 SUPERFAMILY SSF56349 49 293 4.41E-35 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_1329 401c1fd7abcc54206afbf5132c843c63 326 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 50 121 1.8E-10 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 trd_1329 401c1fd7abcc54206afbf5132c843c63 326 Pfam PF00589 Phage integrase family 148 297 1.5E-11 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 trd_0380 cae5b166f48fabf84f500bcfab5eff27 471 Pfam PF01458 Uncharacterized protein family (UPF0051) 217 442 4.2E-76 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 trd_0380 cae5b166f48fabf84f500bcfab5eff27 471 SUPERFAMILY SSF101960 38 468 1.44E-143 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily trd_0380 cae5b166f48fabf84f500bcfab5eff27 471 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 17 462 5.7E-224 T 13-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 trd_1687 eb15f97e0a74f2b219070a42b91ebbac 322 SUPERFAMILY SSF53474 45 320 1.79E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1687 eb15f97e0a74f2b219070a42b91ebbac 322 Gene3D G3DSA:3.40.50.1820 1 322 7.7E-100 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_1687 eb15f97e0a74f2b219070a42b91ebbac 322 Pfam PF07859 alpha/beta hydrolase fold 87 295 8.8E-70 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 trd_1722 f684d99b9825143b527aac1655c43d42 154 Gene3D G3DSA:3.50.80.10 1 148 8.7E-58 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily trd_1722 f684d99b9825143b527aac1655c43d42 154 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 36.21 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 trd_1722 f684d99b9825143b527aac1655c43d42 154 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.4E-58 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 trd_1722 f684d99b9825143b527aac1655c43d42 154 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 145 1.3E-55 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 trd_1722 f684d99b9825143b527aac1655c43d42 154 SUPERFAMILY SSF69500 1 145 1.31E-57 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SMART SM00919 164 387 4.2E-86 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SMART SM00919 585 809 9.2E-117 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Pfam PF00390 Malic enzyme, N-terminal domain 477 572 6.3E-19 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Pfam PF00390 Malic enzyme, N-terminal domain 27 114 6.5E-8 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SMART SM01274 18 151 2.9E-38 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SMART SM01274 439 573 1.9E-61 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SUPERFAMILY SSF53223 11 160 5.61E-30 T 13-10-2018 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SUPERFAMILY SSF51735 164 420 3.51E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Pfam PF03949 Malic enzyme, NAD binding domain 165 386 6.1E-18 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Pfam PF03949 Malic enzyme, NAD binding domain 587 808 8.2E-22 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SUPERFAMILY SSF53223 432 583 2.52E-45 T 13-10-2018 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 ProSitePatterns PS00331 Malic enzymes signature. 581 597 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Gene3D G3DSA:3.40.50.720 162 424 1.6E-67 T 13-10-2018 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 SUPERFAMILY SSF51735 585 833 2.34E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Gene3D G3DSA:3.40.50.720 583 834 1.8E-82 T 13-10-2018 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Gene3D G3DSA:3.40.50.10380 2 160 1.1E-45 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 trd_A0309 1b07a58edd16abedecd3ec7540d1d4ad 837 Gene3D G3DSA:3.40.50.10380 425 582 1.7E-63 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 trd_0244 82d5794ee32382e862160ce908b3da7c 193 Pfam PF10025 Uncharacterized conserved protein (DUF2267) 67 186 1.2E-36 T 13-10-2018 IPR018727 Protein of unknown function DUF2267 trd_0244 82d5794ee32382e862160ce908b3da7c 193 Gene3D G3DSA:1.10.490.110 61 189 1.8E-26 T 13-10-2018 trd_A0044 c6e1a3c0e6d31f1425a95723fe99cf3e 248 SUPERFAMILY SSF117143 87 203 4.84E-21 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like trd_A0044 c6e1a3c0e6d31f1425a95723fe99cf3e 248 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 172 240 9.9E-16 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain trd_A0044 c6e1a3c0e6d31f1425a95723fe99cf3e 248 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site trd_A0044 c6e1a3c0e6d31f1425a95723fe99cf3e 248 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 130 2.0E-34 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G trd_A0044 c6e1a3c0e6d31f1425a95723fe99cf3e 248 Pfam PF00460 Flagella basal body rod protein 5 35 3.8E-5 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 trd_1734 3d402867440ee5bc7081fe1e159973e5 334 SMART SM00861 5 179 1.5E-56 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1734 3d402867440ee5bc7081fe1e159973e5 334 Pfam PF02780 Transketolase, C-terminal domain 196 316 8.3E-39 T 13-10-2018 IPR033248 Transketolase, C-terminal domain trd_1734 3d402867440ee5bc7081fe1e159973e5 334 SUPERFAMILY SSF52922 188 324 9.95E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1734 3d402867440ee5bc7081fe1e159973e5 334 SUPERFAMILY SSF52518 3 204 4.12E-65 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1734 3d402867440ee5bc7081fe1e159973e5 334 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 5.1E-42 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_1734 3d402867440ee5bc7081fe1e159973e5 334 Gene3D G3DSA:3.40.50.920 191 325 9.2E-50 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_1734 3d402867440ee5bc7081fe1e159973e5 334 Gene3D G3DSA:3.40.50.970 4 190 2.3E-77 T 13-10-2018 trd_1794 e1f90720f0f142efc009b400a4668d9f 224 SUPERFAMILY SSF53271 1 208 9.05E-49 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_1794 e1f90720f0f142efc009b400a4668d9f 224 Pfam PF00156 Phosphoribosyl transferase domain 9 175 3.8E-26 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_1794 e1f90720f0f142efc009b400a4668d9f 224 Gene3D G3DSA:3.30.1310.20 52 114 1.3E-72 T 13-10-2018 trd_1794 e1f90720f0f142efc009b400a4668d9f 224 Gene3D G3DSA:3.40.50.2020 2 202 1.3E-72 T 13-10-2018 trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 Hamap MF_00158 Pantothenate synthetase [panC]. 2 277 40.525 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 Pfam PF02569 Pantoate-beta-alanine ligase 3 275 9.3E-104 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 Gene3D G3DSA:3.30.1300.10 176 281 4.2E-31 T 13-10-2018 trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 Gene3D G3DSA:3.40.50.620 5 175 1.4E-77 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 277 1.9E-106 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 24 75 2.7E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_A0785 f691888282fb952f8eedffd0ba2c9537 282 SUPERFAMILY SSF52374 1 278 1.82E-105 T 13-10-2018 trd_1388 425d8fadb8266bfaa885e2907458d360 242 Gene3D G3DSA:3.90.850.10 4 235 8.5E-48 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_1388 425d8fadb8266bfaa885e2907458d360 242 SUPERFAMILY SSF56529 8 228 1.44E-38 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_0200 74ae92d914879260115c15f3505d5c27 114 Gene3D G3DSA:3.30.70.120 5 107 5.0E-37 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal trd_0200 74ae92d914879260115c15f3505d5c27 114 Pfam PF06153 Cyclic-di-AMP receptor 6 112 1.9E-38 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor trd_0200 74ae92d914879260115c15f3505d5c27 114 SUPERFAMILY SSF54913 6 113 1.05E-10 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta trd_1963 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 Gene3D G3DSA:3.60.15.10 28 289 7.5E-68 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1963 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 SUPERFAMILY SSF56281 29 292 9.57E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1963 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 Pfam PF00753 Metallo-beta-lactamase superfamily 39 241 1.8E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_1963 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 SMART SM00849 40 244 8.4E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_A0234 e7883e2d022530a8d093f55906aeb331 292 PIRSF PIRSF004846 6 282 3.1E-62 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 trd_A0234 e7883e2d022530a8d093f55906aeb331 292 Pfam PF13531 Bacterial extracellular solute-binding protein 49 279 1.0E-48 T 13-10-2018 trd_A0234 e7883e2d022530a8d093f55906aeb331 292 Gene3D G3DSA:3.40.190.10 127 241 2.4E-59 T 13-10-2018 trd_A0234 e7883e2d022530a8d093f55906aeb331 292 Gene3D G3DSA:3.40.190.10 51 278 2.4E-59 T 13-10-2018 trd_A0234 e7883e2d022530a8d093f55906aeb331 292 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 54 277 2.3E-38 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 trd_A0234 e7883e2d022530a8d093f55906aeb331 292 SUPERFAMILY SSF53850 48 280 4.12E-54 T 13-10-2018 trd_1538 314c4c33d93535b6e55d938ac66303f6 395 Pfam PF11611 Domain of unknown function (DUF4352) 283 386 6.9E-13 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 trd_1538 314c4c33d93535b6e55d938ac66303f6 395 Pfam PF11611 Domain of unknown function (DUF4352) 116 213 2.6E-13 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 trd_1538 314c4c33d93535b6e55d938ac66303f6 395 Gene3D G3DSA:2.60.40.1240 92 220 7.3E-14 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily trd_1538 314c4c33d93535b6e55d938ac66303f6 395 Gene3D G3DSA:2.60.40.1240 272 390 2.0E-17 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily trd_0703 1c0b2836627de16e4753ba6740c685d6 917 Pfam PF13559 Domain of unknown function (DUF4129) 812 881 3.2E-8 T 13-10-2018 IPR025403 Domain of unknown function DUF4129 trd_0703 1c0b2836627de16e4753ba6740c685d6 917 Gene3D G3DSA:3.10.620.30 568 736 2.1E-22 T 13-10-2018 trd_0703 1c0b2836627de16e4753ba6740c685d6 917 SMART SM00460 643 714 4.3E-21 T 13-10-2018 IPR002931 Transglutaminase-like trd_0703 1c0b2836627de16e4753ba6740c685d6 917 Pfam PF01841 Transglutaminase-like superfamily 596 712 5.9E-28 T 13-10-2018 IPR002931 Transglutaminase-like trd_0703 1c0b2836627de16e4753ba6740c685d6 917 SUPERFAMILY SSF54001 570 818 4.35E-40 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily trd_0979 9f097a905cdc6e46c44a0950a2ff2fc8 118 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 trd_0979 9f097a905cdc6e46c44a0950a2ff2fc8 118 SUPERFAMILY SSF54843 1 111 5.62E-43 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0979 9f097a905cdc6e46c44a0950a2ff2fc8 118 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 27.274 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0979 9f097a905cdc6e46c44a0950a2ff2fc8 118 Gene3D G3DSA:3.90.470.10 1 114 1.1E-44 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 trd_0979 9f097a905cdc6e46c44a0950a2ff2fc8 118 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 106 1.1E-36 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0979 9f097a905cdc6e46c44a0950a2ff2fc8 118 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 2.6E-35 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 trd_A0766 754d75e077be4c11470314866f2ea15c 296 Gene3D G3DSA:3.90.1570.30 4 134 1.2E-7 T 13-10-2018 trd_1209 4de1b54c5e62c62cc80a69c04c50113c 298 Pfam PF07728 AAA domain (dynein-related subfamily) 40 193 5.1E-12 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 trd_1209 4de1b54c5e62c62cc80a69c04c50113c 298 Gene3D G3DSA:3.40.50.300 22 211 1.8E-29 T 13-10-2018 trd_1209 4de1b54c5e62c62cc80a69c04c50113c 298 SUPERFAMILY SSF52540 27 257 4.91E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1696 01d4c2d8112fca162c55da52510c588a 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 7 144 1.6E-60 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_1696 01d4c2d8112fca162c55da52510c588a 151 PIRSF PIRSF001399 3 148 5.5E-60 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_1696 01d4c2d8112fca162c55da52510c588a 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 69.633 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_1696 01d4c2d8112fca162c55da52510c588a 151 Pfam PF01220 Dehydroquinase class II 7 142 8.4E-60 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_1696 01d4c2d8112fca162c55da52510c588a 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 20 135 2.0E-34 T 13-10-2018 trd_1696 01d4c2d8112fca162c55da52510c588a 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_1696 01d4c2d8112fca162c55da52510c588a 151 Gene3D G3DSA:3.40.50.9100 1 150 2.0E-64 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_1696 01d4c2d8112fca162c55da52510c588a 151 SUPERFAMILY SSF52304 6 146 9.68E-61 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 trd_A0370 54a00cef2ddcf352cab7066edb003b9b 98 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 40 92 1.4E-14 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 trd_A0875 23ed244950ca57335dc4f31b810a1825 683 Gene3D G3DSA:3.40.50.300 113 372 1.0E-8 T 13-10-2018 trd_A0875 23ed244950ca57335dc4f31b810a1825 683 Pfam PF08298 PrkA AAA domain 60 421 1.6E-128 T 13-10-2018 IPR013153 PrkA AAA domain trd_A0875 23ed244950ca57335dc4f31b810a1825 683 SUPERFAMILY SSF52540 107 434 2.0E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0875 23ed244950ca57335dc4f31b810a1825 683 SMART SM00763 59 423 3.8E-190 T 13-10-2018 IPR013153 PrkA AAA domain trd_A0875 23ed244950ca57335dc4f31b810a1825 683 Pfam PF06798 PrkA serine protein kinase C-terminal domain 427 676 4.8E-96 T 13-10-2018 IPR010650 PrkA C-terminal domain trd_A0875 23ed244950ca57335dc4f31b810a1825 683 PIRSF PIRSF000549 38 683 4.9E-257 T 13-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 trd_A0322 7da9c413977c33c57429753040c7713e 248 Gene3D G3DSA:1.10.10.1320 8 135 1.0E-12 T 13-10-2018 trd_A0322 7da9c413977c33c57429753040c7713e 248 Pfam PF13490 Putative zinc-finger 13 40 9.0E-5 T 13-10-2018 IPR027383 Putative zinc-finger trd_A0322 7da9c413977c33c57429753040c7713e 248 Pfam PF10099 Anti-sigma-K factor rskA 62 235 2.8E-26 T 13-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 trd_0147 371ddb4914bec986ebf86e90352e9d56 678 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 345 356 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_0147 371ddb4914bec986ebf86e90352e9d56 678 Gene3D G3DSA:1.10.1060.10 254 378 5.7E-13 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0147 371ddb4914bec986ebf86e90352e9d56 678 SUPERFAMILY SSF103501 12 252 5.1E-8 T 13-10-2018 IPR036197 NarG-like superfamily trd_0147 371ddb4914bec986ebf86e90352e9d56 678 Pfam PF02754 Cysteine-rich domain 436 509 0.0029 T 13-10-2018 IPR004017 Cysteine-rich domain trd_0147 371ddb4914bec986ebf86e90352e9d56 678 Pfam PF02754 Cysteine-rich domain 549 631 2.8E-11 T 13-10-2018 IPR004017 Cysteine-rich domain trd_0147 371ddb4914bec986ebf86e90352e9d56 678 Pfam PF13183 4Fe-4S dicluster domain 281 359 2.4E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0147 371ddb4914bec986ebf86e90352e9d56 678 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 284 295 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_0147 371ddb4914bec986ebf86e90352e9d56 678 SUPERFAMILY SSF46548 270 374 1.57E-16 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_1192 09689f5dcf120a20b0b20e0752573867 141 Gene3D G3DSA:1.10.1660.10 12 141 1.2E-24 T 13-10-2018 trd_1192 09689f5dcf120a20b0b20e0752573867 141 SUPERFAMILY SSF46955 10 77 6.87E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily trd_1192 09689f5dcf120a20b0b20e0752573867 141 SMART SM00422 10 78 9.7E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_1192 09689f5dcf120a20b0b20e0752573867 141 Pfam PF13411 MerR HTH family regulatory protein 11 77 3.7E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 trd_0672 55fd19df6dee3f5b6d9e006e15c3f272 445 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 204 369 1.6E-19 T 13-10-2018 IPR004477 ComEC/Rec2-related protein trd_0672 55fd19df6dee3f5b6d9e006e15c3f272 445 Pfam PF03772 Competence protein 182 437 4.9E-42 T 13-10-2018 IPR004477 ComEC/Rec2-related protein trd_0884 b2a06f9888d3705f0792280d69eacd2d 263 Gene3D G3DSA:3.40.50.1000 19 208 1.8E-38 T 13-10-2018 IPR023214 HAD superfamily trd_0884 b2a06f9888d3705f0792280d69eacd2d 263 SUPERFAMILY SSF56784 19 256 2.01E-33 T 13-10-2018 IPR036412 HAD-like superfamily trd_0884 b2a06f9888d3705f0792280d69eacd2d 263 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 19 209 8.6E-15 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 trd_0884 b2a06f9888d3705f0792280d69eacd2d 263 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 19 253 8.1E-37 T 13-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 trd_0884 b2a06f9888d3705f0792280d69eacd2d 263 Pfam PF02358 Trehalose-phosphatase 21 211 2.6E-33 T 13-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 trd_0884 b2a06f9888d3705f0792280d69eacd2d 263 Gene3D G3DSA:3.30.70.1020 99 172 1.8E-38 T 13-10-2018 trd_1747 ff07f224356122e88479c9f24ccc1f67 329 Gene3D G3DSA:3.90.25.10 175 307 2.5E-112 T 13-10-2018 trd_1747 ff07f224356122e88479c9f24ccc1f67 329 SUPERFAMILY SSF51735 6 327 3.97E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1747 ff07f224356122e88479c9f24ccc1f67 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 253 3.4E-58 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 trd_1747 ff07f224356122e88479c9f24ccc1f67 329 Gene3D G3DSA:3.40.50.720 7 253 2.5E-112 T 13-10-2018 trd_1747 ff07f224356122e88479c9f24ccc1f67 329 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 7 326 1.3E-102 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 trd_A0139 16aae463a186161e00dd6f14b23c07bd 164 Pfam PF07884 Vitamin K epoxide reductase family 10 132 1.5E-26 T 13-10-2018 IPR012932 Vitamin K epoxide reductase Reactome: R-HSA-6806664 trd_A0139 16aae463a186161e00dd6f14b23c07bd 164 Gene3D G3DSA:1.20.1440.130 3 151 4.7E-36 T 13-10-2018 IPR038354 VKOR domain superfamily Reactome: R-HSA-6806664 trd_A0139 16aae463a186161e00dd6f14b23c07bd 164 SMART SM00756 5 137 2.3E-21 T 13-10-2018 IPR012932 Vitamin K epoxide reductase Reactome: R-HSA-6806664 trd_A0643 36456bd34a4ff6ebe1bf57b2448c74d8 146 Pfam PF03963 Flagellar hook capping protein - N-terminal region 22 72 9.7E-21 T 13-10-2018 IPR005648 Flagellar hook capping protein trd_1798 ac09d2ec997fc19de18dcfcaf65bae29 226 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 10 210 7.9E-61 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 trd_1798 ac09d2ec997fc19de18dcfcaf65bae29 226 Gene3D G3DSA:3.40.50.620 7 221 8.4E-69 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1798 ac09d2ec997fc19de18dcfcaf65bae29 226 Pfam PF06508 Queuosine biosynthesis protein QueC 9 217 4.0E-68 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 trd_1798 ac09d2ec997fc19de18dcfcaf65bae29 226 PIRSF PIRSF006293 6 226 6.2E-69 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 trd_1798 ac09d2ec997fc19de18dcfcaf65bae29 226 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 8 223 49.859 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 trd_1798 ac09d2ec997fc19de18dcfcaf65bae29 226 SUPERFAMILY SSF52402 8 223 1.26E-56 T 13-10-2018 trd_1412 028cd057c277a3722ad888fe9e2423ee 383 Pfam PF09376 NurA domain 66 341 2.6E-7 T 13-10-2018 IPR018977 NurA domain trd_1412 028cd057c277a3722ad888fe9e2423ee 383 SMART SM00933 65 342 3.1E-20 T 13-10-2018 IPR018977 NurA domain trd_A0774 96d8ca583c9ecf27cfd937996a362f4f 427 SUPERFAMILY SSF53822 120 405 8.41E-35 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_A0774 96d8ca583c9ecf27cfd937996a362f4f 427 Gene3D G3DSA:3.40.50.2300 124 396 1.1E-97 T 13-10-2018 trd_A0774 96d8ca583c9ecf27cfd937996a362f4f 427 Gene3D G3DSA:3.40.50.2300 230 406 1.1E-97 T 13-10-2018 trd_A0774 96d8ca583c9ecf27cfd937996a362f4f 427 Pfam PF13407 Periplasmic binding protein domain 124 382 7.6E-19 T 13-10-2018 IPR025997 Periplasmic binding protein trd_A0844 e6e923bf40ea197ee133435b7559a3a6 409 Pfam PF01070 FMN-dependent dehydrogenase 18 380 1.2E-114 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 trd_A0844 e6e923bf40ea197ee133435b7559a3a6 409 TIGRFAM TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system 4 387 4.5E-216 T 13-10-2018 IPR023989 Heme/flavin dehydrogenase, Rv0694 trd_A0844 e6e923bf40ea197ee133435b7559a3a6 409 Gene3D G3DSA:3.20.20.70 9 383 1.8E-116 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_A0844 e6e923bf40ea197ee133435b7559a3a6 409 PIRSF PIRSF000138 2 385 4.3E-110 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 trd_A0844 e6e923bf40ea197ee133435b7559a3a6 409 SUPERFAMILY SSF51395 10 381 7.94E-87 T 13-10-2018 trd_0159 cde3c9eeddf3d8c56cc9746f52a95d46 173 Gene3D G3DSA:3.40.1260.10 7 173 1.6E-38 T 13-10-2018 IPR027396 DsrEFH-like trd_0159 cde3c9eeddf3d8c56cc9746f52a95d46 173 Pfam PF13686 DsrE/DsrF/DrsH-like family 11 172 2.2E-47 T 13-10-2018 IPR032836 DsrE2-like family trd_0159 cde3c9eeddf3d8c56cc9746f52a95d46 173 SUPERFAMILY SSF75169 11 172 4.45E-21 T 13-10-2018 IPR027396 DsrEFH-like trd_1948 a7e849473f711507ef68a4625eaf2900 238 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 165 3.0E-23 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 trd_1948 a7e849473f711507ef68a4625eaf2900 238 Gene3D G3DSA:3.40.50.720 3 230 1.3E-57 T 13-10-2018 trd_1948 a7e849473f711507ef68a4625eaf2900 238 SUPERFAMILY SSF51735 1 233 3.42E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0317 f469da9523b234b5138ab2d4f00d46cb 323 Gene3D G3DSA:3.40.710.10 40 322 1.3E-75 T 13-10-2018 trd_A0317 f469da9523b234b5138ab2d4f00d46cb 323 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 95 106 2.4E-7 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_A0317 f469da9523b234b5138ab2d4f00d46cb 323 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 145 162 2.4E-7 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_A0317 f469da9523b234b5138ab2d4f00d46cb 323 SUPERFAMILY SSF56601 58 313 1.26E-52 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_A0317 f469da9523b234b5138ab2d4f00d46cb 323 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 62 299 7.2E-37 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 trd_0263 1595707f0ece7de43a7261ad6bf42822 392 SUPERFAMILY SSF49452 25 119 2.55E-6 T 13-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 trd_0263 1595707f0ece7de43a7261ad6bf42822 392 Pfam PF13620 Carboxypeptidase regulatory-like domain 33 119 1.4E-10 T 13-10-2018 trd_0209 60c3b9025d033d8b8702bc32679a7c76 190 Pfam PF00156 Phosphoribosyl transferase domain 34 144 2.7E-18 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_0209 60c3b9025d033d8b8702bc32679a7c76 190 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 190 21.704 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 trd_0209 60c3b9025d033d8b8702bc32679a7c76 190 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 2 181 1.6E-46 T 13-10-2018 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_0209 60c3b9025d033d8b8702bc32679a7c76 190 SUPERFAMILY SSF53271 2 182 3.02E-34 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_0209 60c3b9025d033d8b8702bc32679a7c76 190 Gene3D G3DSA:3.40.50.2020 1 184 9.3E-54 T 13-10-2018 trd_0948 b86859a7e8e9089f2f6215cd4dd18197 143 Pfam PF00011 Hsp20/alpha crystallin family 41 140 2.4E-19 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain trd_0948 b86859a7e8e9089f2f6215cd4dd18197 143 Gene3D G3DSA:2.60.40.790 2 141 1.3E-37 T 13-10-2018 IPR008978 HSP20-like chaperone trd_0948 b86859a7e8e9089f2f6215cd4dd18197 143 SUPERFAMILY SSF49764 20 141 1.63E-35 T 13-10-2018 IPR008978 HSP20-like chaperone trd_A0798 936edf6ee7be4b41905e44a185576e6d 602 Gene3D G3DSA:3.60.110.10 296 535 9.9E-44 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_A0798 936edf6ee7be4b41905e44a185576e6d 602 SUPERFAMILY SSF56317 5 268 3.01E-70 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_A0798 936edf6ee7be4b41905e44a185576e6d 602 Gene3D G3DSA:3.60.110.10 5 268 4.0E-78 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_A0798 936edf6ee7be4b41905e44a185576e6d 602 Pfam PF00795 Carbon-nitrogen hydrolase 297 508 8.6E-21 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 trd_A0798 936edf6ee7be4b41905e44a185576e6d 602 Pfam PF00795 Carbon-nitrogen hydrolase 6 245 8.9E-46 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 trd_A0798 936edf6ee7be4b41905e44a185576e6d 602 SUPERFAMILY SSF56317 298 530 6.02E-42 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 Pfam PF03449 Transcription elongation factor, N-terminal 7 76 1.4E-19 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 156 3.0E-25 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 Gene3D G3DSA:3.10.50.30 80 156 1.1E-25 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 156 23.896 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 SUPERFAMILY SSF54534 83 155 2.09E-19 T 13-10-2018 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 PIRSF PIRSF006092 1 156 9.8E-45 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 SUPERFAMILY SSF46557 6 78 1.22E-16 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 trd_0873 44d8c56fd3eb027e790e8c0bf58515da 156 Gene3D G3DSA:1.10.287.180 5 78 1.3E-19 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 trd_1269 d4587242713dec1fb95d22d16a08be8b 321 SUPERFAMILY SSF52096 41 253 4.68E-43 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily trd_1269 d4587242713dec1fb95d22d16a08be8b 321 Pfam PF01343 Peptidase family S49 117 267 1.5E-52 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 trd_1269 d4587242713dec1fb95d22d16a08be8b 321 Gene3D G3DSA:3.90.226.10 51 259 7.7E-77 T 13-10-2018 trd_1269 d4587242713dec1fb95d22d16a08be8b 321 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 48 265 6.8E-70 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 trd_1269 d4587242713dec1fb95d22d16a08be8b 321 Gene3D G3DSA:3.40.1750.20 157 223 7.7E-77 T 13-10-2018 trd_0250 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 Gene3D G3DSA:1.10.3720.10 165 391 8.5E-54 T 13-10-2018 IPR035906 MetI-like superfamily trd_0250 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 187 389 1.2E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0250 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 Gene3D G3DSA:1.10.3720.10 31 164 9.3E-6 T 13-10-2018 IPR035906 MetI-like superfamily trd_0250 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 SUPERFAMILY SSF161098 167 375 2.22E-50 T 13-10-2018 IPR035906 MetI-like superfamily trd_0964 ea4fb820f4263ccb311758924efafd99 233 Gene3D G3DSA:3.40.50.300 2 228 3.1E-73 T 13-10-2018 trd_0964 ea4fb820f4263ccb311758924efafd99 233 Pfam PF00406 Adenylate kinase 9 198 2.3E-41 T 13-10-2018 trd_0964 ea4fb820f4263ccb311758924efafd99 233 Pfam PF05191 Adenylate kinase, active site lid 136 171 2.7E-17 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 trd_0964 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 90 106 1.8E-27 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 169 184 1.8E-27 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 36 50 1.8E-27 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 8 21 1.8E-27 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 186 200 1.8E-27 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 TIGRFAM TIGR01351 adk: adenylate kinase 7 221 2.1E-68 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 trd_0964 ea4fb820f4263ccb311758924efafd99 233 ProSitePatterns PS00113 Adenylate kinase signature. 90 101 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 Hamap MF_00235 Adenylate kinase [adk]. 5 222 42.46 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 trd_0964 ea4fb820f4263ccb311758924efafd99 233 SUPERFAMILY SSF52540 6 225 5.33E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1364 a48263a278d3e1850e9a77af0e45231c 413 Pfam PF02515 CoA-transferase family III 23 390 1.7E-143 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 trd_1364 a48263a278d3e1850e9a77af0e45231c 413 SUPERFAMILY SSF89796 21 413 4.84E-158 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily trd_1364 a48263a278d3e1850e9a77af0e45231c 413 Gene3D G3DSA:3.30.1540.10 250 341 4.3E-155 T 13-10-2018 trd_1364 a48263a278d3e1850e9a77af0e45231c 413 Gene3D G3DSA:3.40.50.10540 22 406 4.3E-155 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 Pfam PF13481 AAA domain 284 445 2.4E-21 T 13-10-2018 trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 SUPERFAMILY SSF52540 297 512 1.3E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 SMART SM00942 191 256 3.2E-10 T 13-10-2018 IPR014820 Primase, C-terminal 1 trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 SUPERFAMILY SSF46785 528 588 6.83E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 Pfam PF08708 Primase C terminal 1 (PriCT-1) 195 254 4.5E-9 T 13-10-2018 IPR014820 Primase, C-terminal 1 trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 Gene3D G3DSA:1.10.10.10 525 588 3.4E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 SUPERFAMILY SSF56747 9 154 1.44E-13 T 13-10-2018 trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 Gene3D G3DSA:3.40.50.300 282 519 1.1E-21 T 13-10-2018 trd_0550 027bc8a454bd61d1d35f0ba664b724bb 781 SMART SM00943 12 174 4.5E-4 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal trd_A0851 04d511d82b275c8e9ddc1c9a4bfa02a4 434 Pfam PF01425 Amidase 25 415 3.6E-83 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_A0851 04d511d82b275c8e9ddc1c9a4bfa02a4 434 Gene3D G3DSA:3.90.1300.10 7 427 7.1E-129 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_A0851 04d511d82b275c8e9ddc1c9a4bfa02a4 434 SUPERFAMILY SSF75304 2 425 2.22E-118 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_1888 19da52428578bfe2218a4aa29cf27e28 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 191 7.0E-27 T 13-10-2018 trd_1888 19da52428578bfe2218a4aa29cf27e28 222 Gene3D G3DSA:1.10.150.240 18 91 1.2E-48 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 trd_1888 19da52428578bfe2218a4aa29cf27e28 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 130 189 6.4E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 trd_1888 19da52428578bfe2218a4aa29cf27e28 222 Gene3D G3DSA:3.40.50.1000 7 206 1.2E-48 T 13-10-2018 IPR023214 HAD superfamily trd_1888 19da52428578bfe2218a4aa29cf27e28 222 SUPERFAMILY SSF56784 6 214 7.27E-46 T 13-10-2018 IPR036412 HAD-like superfamily trd_1757 4c55f413cb6570d5d912ef6fe043e717 97 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 8.7E-26 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 trd_1757 4c55f413cb6570d5d912ef6fe043e717 97 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 8.1E-22 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 trd_1757 4c55f413cb6570d5d912ef6fe043e717 97 Gene3D G3DSA:1.10.20.60 1 93 2.4E-29 T 13-10-2018 trd_1757 4c55f413cb6570d5d912ef6fe043e717 97 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.3 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 trd_1757 4c55f413cb6570d5d912ef6fe043e717 97 SUPERFAMILY SSF141000 3 91 2.62E-27 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 trd_1031 05023b914126ec2f0fc54377e4138185 436 Gene3D G3DSA:3.40.1480.10 269 431 3.9E-125 T 13-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily trd_1031 05023b914126ec2f0fc54377e4138185 436 Gene3D G3DSA:3.40.50.10180 26 268 3.9E-125 T 13-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 trd_1031 05023b914126ec2f0fc54377e4138185 436 SUPERFAMILY SSF82544 7 435 4.05E-121 T 13-10-2018 trd_1031 05023b914126ec2f0fc54377e4138185 436 Pfam PF05161 MOFRL family 324 429 4.1E-32 T 13-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 trd_1031 05023b914126ec2f0fc54377e4138185 436 Pfam PF13660 Domain of unknown function (DUF4147) 10 248 2.1E-71 T 13-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 trd_0594 5a65cfcc2065a30a52a1786aa408d6f8 139 Gene3D G3DSA:1.10.760.10 35 139 7.9E-31 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0594 5a65cfcc2065a30a52a1786aa408d6f8 139 SUPERFAMILY SSF46626 1 138 6.58E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 trd_0594 5a65cfcc2065a30a52a1786aa408d6f8 139 Pfam PF00034 Cytochrome c 40 138 1.2E-7 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0406 e69edd530dd3fca283cc84ccdae307af 274 Pfam PF01927 Mut7-C RNAse domain 100 243 1.2E-46 T 13-10-2018 IPR002782 Mut7-C RNAse domain trd_A0406 e69edd530dd3fca283cc84ccdae307af 274 SUPERFAMILY SSF54285 10 80 4.74E-9 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp trd_A0406 e69edd530dd3fca283cc84ccdae307af 274 Pfam PF14451 Mut7-C ubiquitin 8 85 2.4E-21 T 13-10-2018 IPR027798 Ubiquitin Mut7-C domain trd_A0406 e69edd530dd3fca283cc84ccdae307af 274 Gene3D G3DSA:3.10.20.30 4 82 6.6E-8 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_1665 526c19d3c952318a388343f923d99b8f 578 SUPERFAMILY SSF51445 74 400 8.41E-56 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1665 526c19d3c952318a388343f923d99b8f 578 Gene3D G3DSA:3.20.20.80 75 403 1.2E-53 T 13-10-2018 trd_1665 526c19d3c952318a388343f923d99b8f 578 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 61 233 8.3E-12 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 36 204 1.6E-47 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 Gene3D G3DSA:1.10.10.2830 116 230 1.3E-17 T 13-10-2018 trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 SUPERFAMILY SSF110849 39 150 5.06E-29 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 SUPERFAMILY SSF109709 122 231 1.44E-19 T 13-10-2018 trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 SMART SM00470 38 129 9.4E-36 T 13-10-2018 IPR003115 ParB/Sulfiredoxin trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 Gene3D G3DSA:3.90.1530.30 51 115 3.6E-27 T 13-10-2018 trd_A0765 35d84adca147baf2c2c5dd47df0096d5 328 Pfam PF02195 ParB-like nuclease domain 39 129 6.4E-28 T 13-10-2018 IPR003115 ParB/Sulfiredoxin trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 Gene3D G3DSA:1.10.569.10 239 427 4.3E-105 T 13-10-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 SMART SM00790 4 205 3.2E-77 T 13-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 Gene3D G3DSA:1.10.599.10 237 591 4.3E-105 T 13-10-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 231 591 2.3E-102 T 13-10-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 Gene3D G3DSA:3.60.9.10 1 209 5.4E-60 T 13-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 6 204 9.9E-58 T 13-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 SUPERFAMILY SSF48310 211 593 6.54E-95 T 13-10-2018 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 trd_A0661 86b1bffaccb86e1f155fbdc51230c4d2 602 SUPERFAMILY SSF56228 2 207 7.46E-56 T 13-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily trd_0173 e228d9de9bf08d1af10ad84d5309c807 475 Pfam PF01425 Amidase 29 449 9.8E-111 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_0173 e228d9de9bf08d1af10ad84d5309c807 475 Gene3D G3DSA:3.90.1300.10 2 471 2.2E-156 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_0173 e228d9de9bf08d1af10ad84d5309c807 475 SUPERFAMILY SSF75304 5 458 1.83E-142 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 trd_0173 e228d9de9bf08d1af10ad84d5309c807 475 ProSitePatterns PS00571 Amidases signature. 156 187 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 trd_A0546 c42d407ad4a04671d264d3c8e1cea063 374 Gene3D G3DSA:3.10.28.20 309 374 5.4E-8 T 13-10-2018 trd_A0546 c42d407ad4a04671d264d3c8e1cea063 374 SUPERFAMILY SSF141130 19 372 3.92E-82 T 13-10-2018 trd_A0546 c42d407ad4a04671d264d3c8e1cea063 374 Pfam PF03069 Acetamidase/Formamidase family 9 372 3.3E-125 T 13-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 trd_A0546 c42d407ad4a04671d264d3c8e1cea063 374 Gene3D G3DSA:2.60.120.580 17 133 2.2E-21 T 13-10-2018 trd_A0546 c42d407ad4a04671d264d3c8e1cea063 374 Gene3D G3DSA:2.60.120.580 182 268 4.8E-24 T 13-10-2018 trd_0462 f4a017a6189933b9e58a343f67b58619 322 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 5 227 4.7E-76 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c trd_0462 f4a017a6189933b9e58a343f67b58619 322 Gene3D G3DSA:3.20.20.30 1 320 1.8E-77 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_0462 f4a017a6189933b9e58a343f67b58619 322 Pfam PF00296 Luciferase-like monooxygenase 9 292 3.3E-56 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_0462 f4a017a6189933b9e58a343f67b58619 322 SUPERFAMILY SSF51679 2 319 3.4E-74 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1025 e5de9db3bac99ab9d35b19ff13697e5c 313 Pfam PF01040 UbiA prenyltransferase family 51 274 1.1E-17 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 trd_1025 e5de9db3bac99ab9d35b19ff13697e5c 313 Gene3D G3DSA:1.10.357.140 33 177 1.5E-10 T 13-10-2018 trd_A0420 a5f12fc40018c5e7761009228f2756d2 60 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 3 54 6.9E-14 T 13-10-2018 IPR011893 Selenoprotein, Rdx-type trd_A0420 a5f12fc40018c5e7761009228f2756d2 60 Gene3D G3DSA:3.40.30.10 1 58 1.1E-13 T 13-10-2018 trd_A0420 a5f12fc40018c5e7761009228f2756d2 60 Pfam PF10262 Rdx family 3 53 6.9E-15 T 13-10-2018 IPR011893 Selenoprotein, Rdx-type trd_A0420 a5f12fc40018c5e7761009228f2756d2 60 SUPERFAMILY SSF52833 3 57 4.25E-11 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 1.4E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 SMART SM00895 87 212 3.9E-20 T 13-10-2018 IPR011711 GntR, C-terminal trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 3.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 3.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 SUPERFAMILY SSF46785 11 81 6.45E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 Pfam PF07729 FCD domain 87 211 1.5E-25 T 13-10-2018 IPR011711 GntR, C-terminal trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 Gene3D G3DSA:1.20.120.530 80 220 9.1E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 Gene3D G3DSA:1.10.10.10 10 78 6.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 SUPERFAMILY SSF48008 83 218 7.59E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal trd_0129 4e06ffd42bccfd14d6f89190309194c5 227 SMART SM00345 19 77 2.6E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 trd_A0509 4749b414a32a2f132155db5d351083fd 95 Gene3D G3DSA:3.30.390.50 1 92 6.3E-23 T 13-10-2018 trd_0137 10f77329c99615ccd5451c11fef590a7 302 Gene3D G3DSA:1.10.3720.10 18 292 9.1E-57 T 13-10-2018 IPR035906 MetI-like superfamily trd_0137 10f77329c99615ccd5451c11fef590a7 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 294 1.1E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0137 10f77329c99615ccd5451c11fef590a7 302 SUPERFAMILY SSF161098 27 299 8.04E-64 T 13-10-2018 IPR035906 MetI-like superfamily trd_0691 3af9caf0959241af961cab7c1f960401 234 Gene3D G3DSA:1.10.10.630 137 205 3.4E-11 T 13-10-2018 IPR034829 DnaD-like domain superfamily trd_0691 3af9caf0959241af961cab7c1f960401 234 SUPERFAMILY SSF158499 141 201 1.07E-13 T 13-10-2018 IPR034829 DnaD-like domain superfamily trd_0691 3af9caf0959241af961cab7c1f960401 234 Pfam PF07261 Replication initiation and membrane attachment 143 201 2.9E-10 T 13-10-2018 IPR006343 DnaD domain trd_0691 3af9caf0959241af961cab7c1f960401 234 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 142 201 3.1E-11 T 13-10-2018 IPR006343 DnaD domain trd_0880 f8e6e86135cf71ef140ee69dbd2e5337 409 Pfam PF01266 FAD dependent oxidoreductase 8 365 4.5E-53 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0880 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.30.9.10 88 325 5.6E-102 T 13-10-2018 trd_0880 f8e6e86135cf71ef140ee69dbd2e5337 409 SUPERFAMILY SSF51905 6 384 7.77E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0880 f8e6e86135cf71ef140ee69dbd2e5337 409 SUPERFAMILY SSF54373 223 325 8.63E-18 T 13-10-2018 trd_0880 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.50.50.60 9 380 5.6E-102 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1718 0f11b722b51e507ec7552a905ed84f01 389 SMART SM00116 316 363 2.8E-10 T 13-10-2018 IPR000644 CBS domain trd_1718 0f11b722b51e507ec7552a905ed84f01 389 SMART SM00116 252 299 1.6E-11 T 13-10-2018 IPR000644 CBS domain trd_1718 0f11b722b51e507ec7552a905ed84f01 389 Gene3D G3DSA:3.10.580.10 299 375 1.8E-14 T 13-10-2018 trd_1718 0f11b722b51e507ec7552a905ed84f01 389 Pfam PF02163 Peptidase family M50 136 196 1.2E-6 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 trd_1718 0f11b722b51e507ec7552a905ed84f01 389 Pfam PF00571 CBS domain 307 363 6.8E-12 T 13-10-2018 IPR000644 CBS domain trd_1718 0f11b722b51e507ec7552a905ed84f01 389 Pfam PF00571 CBS domain 245 297 4.7E-15 T 13-10-2018 IPR000644 CBS domain trd_1718 0f11b722b51e507ec7552a905ed84f01 389 Gene3D G3DSA:3.10.580.10 217 298 2.8E-15 T 13-10-2018 trd_1718 0f11b722b51e507ec7552a905ed84f01 389 SUPERFAMILY SSF54631 235 363 1.11E-31 T 13-10-2018 trd_1718 0f11b722b51e507ec7552a905ed84f01 389 PIRSF PIRSF006404 1 371 3.4E-105 T 13-10-2018 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS trd_1170 fa079ef2921fec5dec3417cc864169e2 542 Gene3D G3DSA:1.20.1720.10 28 265 1.1E-53 T 13-10-2018 trd_1170 fa079ef2921fec5dec3417cc864169e2 542 SUPERFAMILY SSF103473 16 528 1.2E-74 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1170 fa079ef2921fec5dec3417cc864169e2 542 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 524 2.1E-90 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 trd_1170 fa079ef2921fec5dec3417cc864169e2 542 Gene3D G3DSA:1.20.1250.20 272 444 2.8E-21 T 13-10-2018 trd_1170 fa079ef2921fec5dec3417cc864169e2 542 Pfam PF07690 Major Facilitator Superfamily 31 424 1.0E-55 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_0133 af0e78e8c6ecfa4eba4dfd18815f2610 350 SUPERFAMILY SSF51735 4 155 5.7E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0133 af0e78e8c6ecfa4eba4dfd18815f2610 350 Gene3D G3DSA:3.30.360.10 134 335 4.3E-75 T 13-10-2018 trd_0133 af0e78e8c6ecfa4eba4dfd18815f2610 350 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 124 2.1E-28 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 trd_0133 af0e78e8c6ecfa4eba4dfd18815f2610 350 SUPERFAMILY SSF55347 134 284 1.7E-17 T 13-10-2018 trd_0133 af0e78e8c6ecfa4eba4dfd18815f2610 350 Gene3D G3DSA:3.40.50.720 11 318 4.3E-75 T 13-10-2018 trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 TIGRFAM TIGR00444 mazG: MazG family protein 248 389 3.4E-53 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 SUPERFAMILY SSF101386 243 341 1.83E-23 T 13-10-2018 trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Gene3D G3DSA:1.10.287.1080 239 361 1.1E-44 T 13-10-2018 trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 218 8.9E-20 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Gene3D G3DSA:3.40.1010.10 2 120 8.8E-9 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 264 337 6.1E-28 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core trd_0852 ed6fa9dbfbf88f26d6ccdb58c2230066 456 SUPERFAMILY SSF53790 6 272 3.49E-21 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 trd_A0781 8dc934c72da5d79d7b288918c4120055 77 Gene3D G3DSA:3.30.70.920 2 75 3.4E-22 T 13-10-2018 trd_A0781 8dc934c72da5d79d7b288918c4120055 77 SUPERFAMILY SSF54909 4 76 1.88E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_A0781 8dc934c72da5d79d7b288918c4120055 77 Pfam PF01037 Lrp/AsnC ligand binding domain 7 76 2.6E-15 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain trd_1076 ca232352a6844fba77955fe912a7be06 153 SUPERFAMILY SSF46785 7 144 1.8E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_1076 ca232352a6844fba77955fe912a7be06 153 SMART SM00347 27 128 5.5E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1076 ca232352a6844fba77955fe912a7be06 153 Pfam PF01047 MarR family 34 84 1.9E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 trd_1076 ca232352a6844fba77955fe912a7be06 153 Gene3D G3DSA:1.10.10.10 2 141 9.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0138 3ad4f2b4e1a8a0e17e57c7ed8e5d19bc 101 SUPERFAMILY SSF54909 1 85 1.27E-6 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_A0104 9faafc117a9198be269ff79a735c4bf5 184 Pfam PF13182 Protein of unknown function (DUF4007) 2 181 9.9E-7 T 13-10-2018 IPR025248 Domain of unknown function DUF4007 trd_0491 df7255a314141aa6af34d53b9bc9ded7 278 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 6 267 2.2E-71 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 trd_0491 df7255a314141aa6af34d53b9bc9ded7 278 Pfam PF02673 Bacitracin resistance protein BacA 6 269 2.8E-76 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 trd_0491 df7255a314141aa6af34d53b9bc9ded7 278 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 274 17.816 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 trd_1965 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Gene3D G3DSA:3.40.50.2000 173 350 1.6E-110 T 13-10-2018 trd_1965 ef0f3d0b1b84f61745a09c8a81e93ee9 395 SUPERFAMILY SSF53756 2 368 9.07E-85 T 13-10-2018 trd_1965 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Pfam PF00534 Glycosyl transferases group 1 188 346 3.3E-39 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_1965 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Gene3D G3DSA:3.40.50.2000 13 363 1.6E-110 T 13-10-2018 trd_1965 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Pfam PF13439 Glycosyltransferase Family 4 14 176 3.0E-22 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_A0169 1ee68e8f7c1c094c9004c7264ae8b8ee 308 SUPERFAMILY SSF58104 53 169 2.09E-7 T 13-10-2018 trd_A0169 1ee68e8f7c1c094c9004c7264ae8b8ee 308 Gene3D G3DSA:1.20.5.170 78 163 2.9E-7 T 13-10-2018 trd_0127 1d4a1e44f06f8d30310b86c4486acf1b 316 Gene3D G3DSA:1.10.443.10 102 300 1.3E-52 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 trd_0127 1d4a1e44f06f8d30310b86c4486acf1b 316 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 6 49 4.2E-8 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 trd_0127 1d4a1e44f06f8d30310b86c4486acf1b 316 Gene3D G3DSA:1.10.150.130 4 99 1.5E-22 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal trd_0127 1d4a1e44f06f8d30310b86c4486acf1b 316 SUPERFAMILY SSF56349 7 292 1.53E-65 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_0127 1d4a1e44f06f8d30310b86c4486acf1b 316 Pfam PF00589 Phage integrase family 99 284 9.9E-26 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 trd_A0251 133349c11e8cd129e810745a391c248d 271 Gene3D G3DSA:1.10.3720.10 53 249 4.1E-24 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0251 133349c11e8cd129e810745a391c248d 271 SUPERFAMILY SSF161098 57 240 2.62E-30 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0251 133349c11e8cd129e810745a391c248d 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 240 4.7E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0793 d5e19f96de9623c42ba191ece6f0e7d4 455 Pfam PF13458 Periplasmic binding protein 87 432 4.2E-65 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_A0793 d5e19f96de9623c42ba191ece6f0e7d4 455 SUPERFAMILY SSF53822 87 448 3.62E-80 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_A0793 d5e19f96de9623c42ba191ece6f0e7d4 455 Gene3D G3DSA:3.40.50.2300 207 426 3.0E-117 T 13-10-2018 trd_A0793 d5e19f96de9623c42ba191ece6f0e7d4 455 Gene3D G3DSA:3.40.50.2300 88 424 3.0E-117 T 13-10-2018 trd_0810 4555380ec7878fcf24bf62bee8ebec46 224 SUPERFAMILY SSF53335 29 185 3.1E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0810 4555380ec7878fcf24bf62bee8ebec46 224 Pfam PF08241 Methyltransferase domain 65 156 2.4E-18 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 trd_0810 4555380ec7878fcf24bf62bee8ebec46 224 Gene3D G3DSA:3.40.50.150 32 181 9.4E-28 T 13-10-2018 trd_A0552 28fbc34d016ed2cc7d73a52853cb73d3 104 SUPERFAMILY SSF52833 1 100 4.9E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_A0552 28fbc34d016ed2cc7d73a52853cb73d3 104 Gene3D G3DSA:3.40.30.10 1 103 1.3E-20 T 13-10-2018 trd_A0552 28fbc34d016ed2cc7d73a52853cb73d3 104 Pfam PF00578 AhpC/TSA family 1 77 2.8E-14 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 trd_A0580 e65e63971c246aeba6a3098b64bc045b 280 SUPERFAMILY SSF82549 3 277 1.1E-76 T 13-10-2018 trd_A0580 e65e63971c246aeba6a3098b64bc045b 280 Gene3D G3DSA:3.30.1180.10 152 278 3.2E-33 T 13-10-2018 trd_A0580 e65e63971c246aeba6a3098b64bc045b 280 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 274 4.9E-85 T 13-10-2018 IPR003797 DegV trd_A0580 e65e63971c246aeba6a3098b64bc045b 280 Gene3D G3DSA:3.40.50.10170 1 151 8.1E-46 T 13-10-2018 trd_A0580 e65e63971c246aeba6a3098b64bc045b 280 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 276 8.3E-76 T 13-10-2018 IPR003797 DegV trd_0384 82d73becb12a7476e1961731522681c1 156 Gene3D G3DSA:3.90.1010.10 1 144 4.8E-32 T 13-10-2018 trd_0384 82d73becb12a7476e1961731522681c1 156 SUPERFAMILY SSF82649 2 124 8.89E-29 T 13-10-2018 trd_0384 82d73becb12a7476e1961731522681c1 156 Pfam PF01592 NifU-like N terminal domain 2 124 1.3E-20 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 trd_1924 b46966f6a818038a1bdddfdd3eb01d08 96 SUPERFAMILY SSF55229 37 86 3.14E-7 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 trd_1924 b46966f6a818038a1bdddfdd3eb01d08 96 Pfam PF03776 Septum formation topological specificity factor MinE 19 85 1.6E-15 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 trd_1924 b46966f6a818038a1bdddfdd3eb01d08 96 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 7 86 3.4E-14 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 trd_1924 b46966f6a818038a1bdddfdd3eb01d08 96 Gene3D G3DSA:3.30.1070.10 23 85 8.7E-7 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 trd_A0874 5639dcb38b235652570b3da4afedbadc 389 TIGRFAM TIGR02877 spore_yhbH: sporulation protein YhbH 9 378 1.1E-160 T 13-10-2018 IPR014230 Sporulation protein YhbH trd_A0874 5639dcb38b235652570b3da4afedbadc 389 SUPERFAMILY SSF53300 211 324 5.01E-6 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily trd_A0874 5639dcb38b235652570b3da4afedbadc 389 Pfam PF04285 Protein of unknown function (DUF444) 13 179 8.1E-37 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 trd_A0874 5639dcb38b235652570b3da4afedbadc 389 Pfam PF04285 Protein of unknown function (DUF444) 188 378 1.8E-72 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 trd_1415 0f0780e258f9f9af6f7e6bfd119681b7 103 Pfam PF02583 Metal-sensitive transcriptional repressor 20 97 4.9E-28 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 trd_1415 0f0780e258f9f9af6f7e6bfd119681b7 103 Gene3D G3DSA:1.20.58.1000 2 100 5.9E-30 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily trd_1055 30af08b6bbe3b849298c8d174269430a 331 Gene3D G3DSA:1.10.443.10 127 303 1.1E-54 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 trd_1055 30af08b6bbe3b849298c8d174269430a 331 SUPERFAMILY SSF56349 20 298 8.24E-56 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_1055 30af08b6bbe3b849298c8d174269430a 331 Gene3D G3DSA:1.10.150.130 13 123 2.3E-27 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal trd_1055 30af08b6bbe3b849298c8d174269430a 331 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 22 106 8.9E-21 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 trd_1055 30af08b6bbe3b849298c8d174269430a 331 Pfam PF00589 Phage integrase family 130 298 2.1E-40 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 trd_1871 cab91c24dbcd105c024c94f10ed089c4 131 Gene3D G3DSA:2.20.28.10 69 118 4.1E-23 T 13-10-2018 trd_1871 cab91c24dbcd105c024c94f10ed089c4 131 Gene3D G3DSA:3.30.2320.50 2 123 4.1E-23 T 13-10-2018 trd_1871 cab91c24dbcd105c024c94f10ed089c4 131 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site trd_1871 cab91c24dbcd105c024c94f10ed089c4 131 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 129 20.098 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 trd_1871 cab91c24dbcd105c024c94f10ed089c4 131 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 127 5.5E-26 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 trd_1871 cab91c24dbcd105c024c94f10ed089c4 131 PIRSF PIRSF004761 1 130 2.0E-24 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 trd_0569 fe6dab7a4e662afcbb409192f9461c22 256 SUPERFAMILY SSF88659 165 247 3.92E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like trd_0569 fe6dab7a4e662afcbb409192f9461c22 256 Gene3D G3DSA:1.10.10.10 167 250 4.8E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0962 ca26daaec29d6d8a050f4ee29e463dfe 81 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.9E-37 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 trd_0962 ca26daaec29d6d8a050f4ee29e463dfe 81 SUPERFAMILY SSF50249 2 74 3.0E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_0962 ca26daaec29d6d8a050f4ee29e463dfe 81 SMART SM00316 4 72 1.9E-8 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_0962 ca26daaec29d6d8a050f4ee29e463dfe 81 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 6.7E-28 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 trd_0962 ca26daaec29d6d8a050f4ee29e463dfe 81 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.656 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 trd_0962 ca26daaec29d6d8a050f4ee29e463dfe 81 Gene3D G3DSA:2.40.50.140 2 70 2.9E-37 T 13-10-2018 trd_1354 1527377b6cc71f83ca31ff50a0809836 241 Pfam PF02585 GlcNAc-PI de-N-acetylase 19 146 4.7E-32 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 trd_1354 1527377b6cc71f83ca31ff50a0809836 241 SUPERFAMILY SSF102588 16 238 6.93E-51 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_1354 1527377b6cc71f83ca31ff50a0809836 241 Gene3D G3DSA:3.40.50.10320 3 240 9.8E-70 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_1676 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 Pfam PF01547 Bacterial extracellular solute-binding protein 98 360 3.1E-14 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_1676 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 SUPERFAMILY SSF53850 82 479 4.82E-43 T 13-10-2018 trd_1676 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 Gene3D G3DSA:3.40.190.10 81 482 5.2E-45 T 13-10-2018 trd_1533 5f805a3405aca1b174663d121a7fb577 69 Pfam PF09851 Short C-terminal domain 38 64 7.5E-12 T 13-10-2018 IPR018649 SHOCT domain trd_1161 fb14403dac561e6cd57d69a32ab60e96 392 Pfam PF13641 Glycosyltransferase like family 2 49 254 7.0E-16 T 13-10-2018 trd_1161 fb14403dac561e6cd57d69a32ab60e96 392 Gene3D G3DSA:3.90.550.10 24 258 2.2E-21 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_1161 fb14403dac561e6cd57d69a32ab60e96 392 SUPERFAMILY SSF53448 47 255 3.43E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0950 c3bc788a8109f9fc3e77d48b350064cd 263 Pfam PF12706 Beta-lactamase superfamily domain 31 224 4.5E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0950 c3bc788a8109f9fc3e77d48b350064cd 263 Gene3D G3DSA:3.60.15.10 1 256 6.6E-64 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0950 c3bc788a8109f9fc3e77d48b350064cd 263 SMART SM00849 18 201 4.1E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase trd_0950 c3bc788a8109f9fc3e77d48b350064cd 263 SUPERFAMILY SSF56281 2 256 2.36E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1941 153fb37381f9501ff4dfd79e42e76601 404 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 245 334 1.4E-10 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal trd_1941 153fb37381f9501ff4dfd79e42e76601 404 Gene3D G3DSA:3.40.225.10 238 395 4.4E-20 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily trd_1941 153fb37381f9501ff4dfd79e42e76601 404 SMART SM01007 236 401 7.4E-4 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal trd_1941 153fb37381f9501ff4dfd79e42e76601 404 SUPERFAMILY SSF53639 244 393 4.71E-20 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily trd_A0808 730aef222ac6b81d3b200877894d7cea 137 Gene3D G3DSA:2.30.130.30 18 117 2.6E-28 T 13-10-2018 trd_A0808 730aef222ac6b81d3b200877894d7cea 137 SUPERFAMILY SSF88697 21 127 3.48E-22 T 13-10-2018 IPR015947 PUA-like superfamily trd_A0808 730aef222ac6b81d3b200877894d7cea 137 Pfam PF04266 ASCH domain 23 114 1.6E-10 T 13-10-2018 IPR007374 ASCH domain trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 SUPERFAMILY SSF51445 171 557 7.68E-86 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:3.20.20.80 195 559 2.9E-160 T 13-10-2018 trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 SMART SM00642 200 550 0.005 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Pfam PF00128 Alpha amylase, catalytic domain 227 324 2.1E-4 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:1.20.58.280 101 175 9.5E-52 T 13-10-2018 trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:2.60.40.10 14 184 9.5E-52 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 11 653 48.912 T 13-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Pfam PF11896 Domain of unknown function (DUF3416) 13 194 2.0E-59 T 13-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 trd_1930 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:2.60.40.1180 562 662 5.0E-35 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta trd_1407 8b6a650bdd2c91511dceb167768ad048 447 SUPERFAMILY SSF53822 72 438 1.91E-58 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_1407 8b6a650bdd2c91511dceb167768ad048 447 Gene3D G3DSA:3.40.50.2300 196 330 8.8E-57 T 13-10-2018 trd_1407 8b6a650bdd2c91511dceb167768ad048 447 Pfam PF13458 Periplasmic binding protein 72 420 2.5E-48 T 13-10-2018 IPR028081 Leucine-binding protein domain trd_1407 8b6a650bdd2c91511dceb167768ad048 447 Gene3D G3DSA:3.40.50.2300 80 402 8.8E-57 T 13-10-2018 trd_0506 674ac4e6f3c6675d386ae3dac34681c0 549 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 106 123 6.7E-10 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_0506 674ac4e6f3c6675d386ae3dac34681c0 549 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 6.7E-10 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_0506 674ac4e6f3c6675d386ae3dac34681c0 549 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 249 4.3E-48 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 trd_0506 674ac4e6f3c6675d386ae3dac34681c0 549 SUPERFAMILY SSF56601 5 269 2.11E-62 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_0506 674ac4e6f3c6675d386ae3dac34681c0 549 Gene3D G3DSA:3.40.710.10 16 291 2.2E-84 T 13-10-2018 trd_0819 4a6bd982e12cc566ab9d15762f677ecf 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 9 230 2.0E-53 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 trd_0819 4a6bd982e12cc566ab9d15762f677ecf 230 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 9 230 29.28 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 trd_0819 4a6bd982e12cc566ab9d15762f677ecf 230 PIRSF PIRSF004848 1 230 4.0E-70 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 trd_0819 4a6bd982e12cc566ab9d15762f677ecf 230 SUPERFAMILY SSF51419 4 229 9.95E-74 T 13-10-2018 IPR029066 PLP-binding barrel trd_0819 4a6bd982e12cc566ab9d15762f677ecf 230 Pfam PF01168 Alanine racemase, N-terminal domain 11 230 2.7E-24 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 trd_0819 4a6bd982e12cc566ab9d15762f677ecf 230 Gene3D G3DSA:3.20.20.10 1 230 1.8E-82 T 13-10-2018 IPR029066 PLP-binding barrel trd_0524 e941297b223278b4b1b29eb3e03a6387 484 TIGRFAM TIGR01499 folC: bifunctional protein FolC 45 448 6.0E-104 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 trd_0524 e941297b223278b4b1b29eb3e03a6387 484 Gene3D G3DSA:3.40.1190.10 35 314 1.5E-84 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0524 e941297b223278b4b1b29eb3e03a6387 484 SUPERFAMILY SSF53623 41 314 2.75E-75 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0524 e941297b223278b4b1b29eb3e03a6387 484 Pfam PF08245 Mur ligase middle domain 67 289 1.1E-13 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 trd_0524 e941297b223278b4b1b29eb3e03a6387 484 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 384 5.2E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 trd_0524 e941297b223278b4b1b29eb3e03a6387 484 SUPERFAMILY SSF53244 316 449 2.09E-29 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_0524 e941297b223278b4b1b29eb3e03a6387 484 Gene3D G3DSA:3.90.190.20 317 451 1.2E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 ProSitePatterns PS00455 Putative AMP-binding domain signature. 262 273 - T 13-10-2018 IPR020845 AMP-binding, conserved site trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 SUPERFAMILY SSF56801 21 634 2.49E-158 T 13-10-2018 trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 Gene3D G3DSA:3.30.300.30 516 645 1.1E-26 T 13-10-2018 trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 Gene3D G3DSA:3.40.50.12780 72 515 7.9E-93 T 13-10-2018 trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 31 84 1.7E-7 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 Pfam PF00501 AMP-binding enzyme 93 519 8.8E-78 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 trd_1139 7db58b1d6719f9246020ef0317db5e4d 654 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 6.6E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain trd_1730 d636d568f6dc884d8f62ce88957f66b7 119 Gene3D G3DSA:3.40.50.720 18 78 3.9E-12 T 13-10-2018 trd_1730 d636d568f6dc884d8f62ce88957f66b7 119 SUPERFAMILY SSF51735 8 79 1.04E-8 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1029 ce802c46fa5de3f6d287a052f2be6f23 309 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 5 292 1.5E-71 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain trd_1029 ce802c46fa5de3f6d287a052f2be6f23 309 Gene3D G3DSA:3.90.245.10 1 304 3.9E-90 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like trd_1029 ce802c46fa5de3f6d287a052f2be6f23 309 SUPERFAMILY SSF53590 4 302 1.57E-79 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 SUPERFAMILY SSF56235 11 253 3.17E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 PIRSF PIRSF000485 7 465 6.8E-172 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 SUPERFAMILY SSF53271 247 462 2.88E-72 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 Gene3D G3DSA:3.40.50.2020 271 435 3.4E-154 T 13-10-2018 trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 Pfam PF13522 Glutamine amidotransferase domain 75 204 2.5E-18 T 13-10-2018 trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 11 453 2.2E-153 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 Pfam PF00156 Phosphoribosyl transferase domain 275 382 3.0E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 Gene3D G3DSA:3.60.20.10 11 454 3.4E-154 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal trd_0750 a9f1d49b774fcf701b201f322612e0ba 490 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 10 452 46.75 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 trd_0016 c511d161a7d5f21797bc023b91c6e47c 287 PIRSF PIRSF005054 1 270 1.5E-49 T 13-10-2018 IPR010156 CRISPR-associated protein, Cas6 GO:0016788 trd_0016 c511d161a7d5f21797bc023b91c6e47c 287 Gene3D G3DSA:3.30.70.1900 124 270 1.0E-22 T 13-10-2018 trd_0016 c511d161a7d5f21797bc023b91c6e47c 287 Gene3D G3DSA:3.30.70.1890 1 121 4.5E-10 T 13-10-2018 trd_0016 c511d161a7d5f21797bc023b91c6e47c 287 Pfam PF01881 CRISPR associated protein Cas6 95 265 3.7E-32 T 13-10-2018 IPR010156 CRISPR-associated protein, Cas6 GO:0016788 trd_0085 bd6e07979144d1a241c9f2d7b435e03e 200 SMART SM00903 14 159 1.5E-29 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 trd_0085 bd6e07979144d1a241c9f2d7b435e03e 200 Gene3D G3DSA:2.30.110.10 3 180 3.7E-47 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_0085 bd6e07979144d1a241c9f2d7b435e03e 200 Pfam PF01613 Flavin reductase like domain 18 154 2.4E-26 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 trd_0085 bd6e07979144d1a241c9f2d7b435e03e 200 SUPERFAMILY SSF50475 6 176 5.4E-45 T 13-10-2018 trd_A0456 929acfed0867be67d31afb208e5c78a9 291 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 37 280 5.7E-55 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related trd_1450 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.30.9.10 164 395 3.5E-95 T 13-10-2018 trd_1450 36a27b8a87ec572ca3e0d9a2ce4d2042 471 SUPERFAMILY SSF51905 83 457 1.86E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1450 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Pfam PF01266 FAD dependent oxidoreductase 85 432 4.6E-62 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_1450 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.50.50.60 85 439 3.5E-95 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0452 c3b29a2fd8d2d815a054ee0cad0f13d7 401 Pfam PF13692 Glycosyl transferases group 1 223 358 4.0E-28 T 13-10-2018 trd_0452 c3b29a2fd8d2d815a054ee0cad0f13d7 401 Gene3D G3DSA:3.40.50.2000 217 376 1.2E-20 T 13-10-2018 trd_0452 c3b29a2fd8d2d815a054ee0cad0f13d7 401 SUPERFAMILY SSF53756 3 394 1.57E-44 T 13-10-2018 trd_0452 c3b29a2fd8d2d815a054ee0cad0f13d7 401 Gene3D G3DSA:3.40.50.2000 1 213 1.5E-15 T 13-10-2018 trd_0452 c3b29a2fd8d2d815a054ee0cad0f13d7 401 Pfam PF13579 Glycosyl transferase 4-like domain 16 205 1.1E-27 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_A0522 7e11a1b72a2fa0dc7ab9b7f93c5db77f 216 SUPERFAMILY SSF50346 136 209 1.77E-6 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_A0522 7e11a1b72a2fa0dc7ab9b7f93c5db77f 216 Gene3D G3DSA:2.30.30.240 4 76 1.8E-5 T 13-10-2018 trd_A0522 7e11a1b72a2fa0dc7ab9b7f93c5db77f 216 SUPERFAMILY SSF50346 5 83 1.06E-9 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_1611 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Gene3D G3DSA:3.40.640.10 120 369 7.6E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_1611 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Pfam PF00202 Aminotransferase class-III 80 391 2.7E-55 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1611 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Gene3D G3DSA:3.90.1150.10 62 482 7.6E-142 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_1611 f08e4b9b0bf7fd7ad4e05f0289477f24 498 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 280 316 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 trd_1611 f08e4b9b0bf7fd7ad4e05f0289477f24 498 SUPERFAMILY SSF53383 54 485 2.7E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0786 3c982f362432f051fea5a66013931004 100 SUPERFAMILY SSF56112 9 98 6.41E-16 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_0786 3c982f362432f051fea5a66013931004 100 Pfam PF00069 Protein kinase domain 8 98 3.4E-9 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 trd_0786 3c982f362432f051fea5a66013931004 100 Gene3D G3DSA:1.10.510.10 6 100 3.3E-14 T 13-10-2018 trd_A0126 a69463e7c6c176e68a0ab7520d01012a 317 Gene3D G3DSA:1.20.5.340 65 170 3.5E-5 T 13-10-2018 trd_1560 05b103b35dafe72a38b613aefee0e02e 524 SUPERFAMILY SSF51703 8 520 2.88E-211 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 trd_1560 05b103b35dafe72a38b613aefee0e02e 524 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 11 521 2.4E-230 T 13-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 trd_1560 05b103b35dafe72a38b613aefee0e02e 524 Gene3D G3DSA:3.20.20.240 2 524 2.5E-246 T 13-10-2018 trd_1560 05b103b35dafe72a38b613aefee0e02e 524 Pfam PF01642 Methylmalonyl-CoA mutase 11 518 7.0E-227 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 trd_1846 ec95d3ff5d7041129f3e770bb2a01384 209 SUPERFAMILY SSF52980 28 206 1.29E-17 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 trd_1846 ec95d3ff5d7041129f3e770bb2a01384 209 Pfam PF05685 Putative restriction endonuclease 34 203 5.9E-31 T 13-10-2018 IPR008538 Domain of unknown function DUF820 trd_1846 ec95d3ff5d7041129f3e770bb2a01384 209 Gene3D G3DSA:3.90.1570.10 26 208 2.7E-13 T 13-10-2018 trd_1982 6695029aa8ed2749ff2a94267d89b0cb 288 Gene3D G3DSA:3.30.70.100 177 266 1.2E-21 T 13-10-2018 trd_1982 6695029aa8ed2749ff2a94267d89b0cb 288 Pfam PF00924 Mechanosensitive ion channel 69 267 1.1E-44 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 trd_1982 6695029aa8ed2749ff2a94267d89b0cb 288 SUPERFAMILY SSF50182 111 173 1.37E-14 T 13-10-2018 IPR010920 LSM domain superfamily trd_1982 6695029aa8ed2749ff2a94267d89b0cb 288 SUPERFAMILY SSF82861 19 109 1.7E-13 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 trd_1982 6695029aa8ed2749ff2a94267d89b0cb 288 SUPERFAMILY SSF82689 174 277 9.55E-16 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 trd_1982 6695029aa8ed2749ff2a94267d89b0cb 288 Gene3D G3DSA:2.30.30.60 126 175 3.4E-19 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily trd_0809 d990d7710bb1c4695c755ac61bb2f9de 171 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 3 23 7.3E-7 T 13-10-2018 trd_0809 d990d7710bb1c4695c755ac61bb2f9de 171 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 23 42 7.3E-7 T 13-10-2018 trd_0809 d990d7710bb1c4695c755ac61bb2f9de 171 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 51 1.8E-16 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 trd_0809 d990d7710bb1c4695c755ac61bb2f9de 171 Pfam PF02416 mttA/Hcf106 family 6 54 4.5E-16 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 trd_0809 d990d7710bb1c4695c755ac61bb2f9de 171 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 79 16.939 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 trd_0318 bceadd5a092689d0407c7d5261b0d003 277 SUPERFAMILY SSF161098 74 255 7.33E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_0318 bceadd5a092689d0407c7d5261b0d003 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 271 1.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0318 bceadd5a092689d0407c7d5261b0d003 277 Gene3D G3DSA:1.10.3720.10 70 268 2.7E-20 T 13-10-2018 IPR035906 MetI-like superfamily trd_1291 09e5cc3f724354d67617700cba968529 192 SUPERFAMILY SSF89095 43 186 2.51E-34 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 trd_1291 09e5cc3f724354d67617700cba968529 192 Gene3D G3DSA:1.10.10.410 131 187 3.2E-13 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal trd_1291 09e5cc3f724354d67617700cba968529 192 Gene3D G3DSA:1.10.1510.10 41 130 9.3E-29 T 13-10-2018 trd_1291 09e5cc3f724354d67617700cba968529 192 Pfam PF09424 Yqey-like protein 45 186 1.0E-43 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 trd_1341 9036f1c7bbe90e31add59261c8953402 176 SUPERFAMILY SSF52949 4 172 6.06E-45 T 13-10-2018 trd_1341 9036f1c7bbe90e31add59261c8953402 176 Pfam PF01661 Macro domain 22 136 3.6E-26 T 13-10-2018 IPR002589 Macro domain trd_1341 9036f1c7bbe90e31add59261c8953402 176 Gene3D G3DSA:3.40.220.10 3 174 9.3E-50 T 13-10-2018 trd_1341 9036f1c7bbe90e31add59261c8953402 176 SMART SM00506 5 137 4.9E-34 T 13-10-2018 IPR002589 Macro domain trd_0092 48f2de638c075982667e1d0382bed436 169 TIGRFAM TIGR00725 TIGR00725: TIGR00725 family protein 6 155 1.8E-38 T 13-10-2018 IPR005268 Conserved hypothetical protein CHP00725 trd_0092 48f2de638c075982667e1d0382bed436 169 Gene3D G3DSA:3.40.50.450 1 161 2.6E-44 T 13-10-2018 trd_0092 48f2de638c075982667e1d0382bed436 169 Pfam PF03641 Possible lysine decarboxylase 46 116 1.3E-4 T 13-10-2018 IPR031100 LOG family trd_0092 48f2de638c075982667e1d0382bed436 169 SUPERFAMILY SSF102405 4 134 2.44E-30 T 13-10-2018 trd_0266 0c3f623357549386e5bdbed996240fb5 541 SUPERFAMILY SSF52540 146 520 7.53E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0266 0c3f623357549386e5bdbed996240fb5 541 Gene3D G3DSA:3.40.50.300 135 281 1.2E-10 T 13-10-2018 trd_0266 0c3f623357549386e5bdbed996240fb5 541 Gene3D G3DSA:3.40.50.300 332 520 6.3E-33 T 13-10-2018 trd_0266 0c3f623357549386e5bdbed996240fb5 541 Pfam PF01935 Domain of unknown function DUF87 151 379 9.4E-28 T 13-10-2018 IPR002789 Helicase HerA, central domain trd_1038 fe58e9711417af0990cacef5c7e56ab2 487 Pfam PF04932 O-Antigen ligase 278 404 2.3E-9 T 13-10-2018 IPR007016 O-antigen ligase-related trd_A0018 a01184ae9fa77ab1be06e3c9bd453b25 124 Gene3D G3DSA:3.30.460.10 12 101 7.0E-11 T 13-10-2018 trd_A0018 a01184ae9fa77ab1be06e3c9bd453b25 124 Pfam PF01909 Nucleotidyltransferase domain 18 62 2.6E-7 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 trd_A0018 a01184ae9fa77ab1be06e3c9bd453b25 124 SUPERFAMILY SSF81301 8 111 8.45E-15 T 13-10-2018 trd_1263 4d68475097481c267d6035e68a194849 394 Pfam PF02163 Peptidase family M50 146 211 2.1E-7 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 trd_1263 4d68475097481c267d6035e68a194849 394 Pfam PF00571 CBS domain 315 367 3.6E-7 T 13-10-2018 IPR000644 CBS domain trd_1263 4d68475097481c267d6035e68a194849 394 PIRSF PIRSF006404 14 378 1.8E-65 T 13-10-2018 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS trd_1263 4d68475097481c267d6035e68a194849 394 SUPERFAMILY SSF54631 279 369 2.19E-14 T 13-10-2018 trd_1263 4d68475097481c267d6035e68a194849 394 Gene3D G3DSA:3.10.580.10 268 377 2.9E-13 T 13-10-2018 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 438 2.0E-160 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 209 437 2.3E-83 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 SUPERFAMILY SSF51230 1 92 3.01E-24 T 13-10-2018 IPR011053 Single hybrid motif trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 SUPERFAMILY SSF47005 117 161 1.57E-12 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 Gene3D G3DSA:2.40.50.100 2 100 3.5E-25 T 13-10-2018 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 SUPERFAMILY SSF52777 209 437 6.67E-90 T 13-10-2018 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 Gene3D G3DSA:4.10.320.10 122 165 2.0E-18 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 Gene3D G3DSA:3.30.559.10 207 438 2.6E-96 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 Pfam PF00364 Biotin-requiring enzyme 4 76 1.0E-19 T 13-10-2018 IPR000089 Biotin/lipoyl attachment trd_0561 1e2d4609cf3d64421fbac64fa107d194 439 Pfam PF02817 e3 binding domain 122 157 9.1E-16 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 SUPERFAMILY SSF54368 8 106 1.14E-33 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 Gene3D G3DSA:3.30.590.10 110 470 1.7E-141 T 13-10-2018 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 Gene3D G3DSA:3.10.20.70 7 109 8.1E-38 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 ProSitePatterns PS00180 Glutamine synthetase signature 1. 55 73 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 SUPERFAMILY SSF55931 108 481 1.86E-128 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 20 100 3.8E-30 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 SMART SM01230 107 389 1.2E-146 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 9 481 9.7E-187 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 264 279 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 trd_1558 6f757e0221cd0db4ae9ca0b093cd31aa 482 Pfam PF00120 Glutamine synthetase, catalytic domain 108 479 7.1E-126 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0453 cbe4d284b67ac3cb55fb867083a47b49 173 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 114 166 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0453 cbe4d284b67ac3cb55fb867083a47b49 173 Gene3D G3DSA:2.60.40.420 68 173 7.4E-28 T 13-10-2018 IPR008972 Cupredoxin trd_A0453 cbe4d284b67ac3cb55fb867083a47b49 173 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 96 167 2.4E-7 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_A0453 cbe4d284b67ac3cb55fb867083a47b49 173 SUPERFAMILY SSF49503 76 173 1.72E-24 T 13-10-2018 IPR008972 Cupredoxin trd_A0396 bc65782f65b4d6e8cc8193204e713a7f 344 Pfam PF02274 Amidinotransferase 131 342 3.8E-20 T 13-10-2018 trd_A0396 bc65782f65b4d6e8cc8193204e713a7f 344 SUPERFAMILY SSF55909 45 343 9.46E-60 T 13-10-2018 trd_A0396 bc65782f65b4d6e8cc8193204e713a7f 344 Gene3D G3DSA:3.75.10.10 42 344 2.1E-70 T 13-10-2018 trd_0558 57036a141e0940e757c5c0ac061ea660 562 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 34 479 3.5E-81 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 158 176 1.6E-10 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 432 453 1.6E-10 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 353 371 1.6E-10 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 67 90 1.6E-10 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 381 400 1.6E-10 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 SUPERFAMILY SSF81442 34 550 1.96E-97 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0558 57036a141e0940e757c5c0ac061ea660 562 Gene3D G3DSA:1.20.210.10 30 562 1.9E-123 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0227 e7db9c2ab330aa11a4870b186556f57d 438 SMART SM00471 252 388 3.9E-12 T 13-10-2018 IPR003607 HD/PDEase domain trd_0227 e7db9c2ab330aa11a4870b186556f57d 438 Pfam PF13487 HD domain 308 369 1.8E-19 T 13-10-2018 trd_0227 e7db9c2ab330aa11a4870b186556f57d 438 SUPERFAMILY SSF109604 248 417 1.07E-40 T 13-10-2018 trd_0227 e7db9c2ab330aa11a4870b186556f57d 438 Gene3D G3DSA:1.10.1760.20 40 210 1.2E-7 T 13-10-2018 trd_0227 e7db9c2ab330aa11a4870b186556f57d 438 Gene3D G3DSA:1.10.3210.10 231 429 1.5E-71 T 13-10-2018 trd_0763 0c1ad7366a819c4657a5e2533e64015e 246 Pfam PF04012 PspA/IM30 family 3 232 6.3E-25 T 13-10-2018 IPR007157 PspA/IM30 trd_1158 9cef069b1a740cc28180b220e353e159 192 Gene3D G3DSA:1.10.357.10 55 191 9.9E-18 T 13-10-2018 trd_1158 9cef069b1a740cc28180b220e353e159 192 SUPERFAMILY SSF46689 8 75 7.48E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 trd_1158 9cef069b1a740cc28180b220e353e159 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 trd_1158 9cef069b1a740cc28180b220e353e159 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 trd_1158 9cef069b1a740cc28180b220e353e159 192 Gene3D G3DSA:1.10.10.60 3 54 2.3E-19 T 13-10-2018 trd_1158 9cef069b1a740cc28180b220e353e159 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 2.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 trd_1158 9cef069b1a740cc28180b220e353e159 192 SUPERFAMILY SSF48498 82 190 1.81E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily trd_1465 6bca9e245b8c71c30e456e437ab8fe63 256 Pfam PF09948 Predicted metal-binding integral membrane protein (DUF2182) 54 242 7.4E-61 T 13-10-2018 IPR018688 Protein of unknown function DUF2182, transmembrane, metal-binding trd_0572 889902c760d7b22dcd8a4beb4dffca5a 486 Gene3D G3DSA:3.90.1700.10 305 470 3.4E-75 T 13-10-2018 trd_0572 889902c760d7b22dcd8a4beb4dffca5a 486 Pfam PF06545 Protein of unknown function (DUF1116) 143 357 1.4E-98 T 13-10-2018 IPR009499 Protein of unknown function DUF1116 trd_0572 889902c760d7b22dcd8a4beb4dffca5a 486 Gene3D G3DSA:3.90.1710.10 164 298 4.9E-78 T 13-10-2018 trd_0572 889902c760d7b22dcd8a4beb4dffca5a 486 Gene3D G3DSA:1.10.10.660 97 163 4.9E-78 T 13-10-2018 IPR024033 Uncharacterised domain superfamily, YlbE trd_1669 629abdd6405f890bd0c985ab28deddf6 245 Gene3D G3DSA:3.40.50.12740 4 222 2.1E-73 T 13-10-2018 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 161 216 9.5E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 SMART SM00448 4 117 4.9E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 192 9.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 176 9.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 204 9.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 ProSitePatterns PS00622 LuxR-type HTH domain signature. 176 203 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 Pfam PF00072 Response regulator receiver domain 6 117 1.4E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 SUPERFAMILY SSF46894 147 223 2.86E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 trd_1669 629abdd6405f890bd0c985ab28deddf6 245 SUPERFAMILY SSF52172 3 132 1.85E-37 T 13-10-2018 IPR011006 CheY-like superfamily trd_1669 629abdd6405f890bd0c985ab28deddf6 245 SMART SM00421 159 216 2.3E-27 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 trd_1302 798695441e4b9ac892aa183759b1e7c5 274 SUPERFAMILY SSF102705 33 255 4.45E-6 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily trd_1688 815e008377b2008e22e62b5253c12d74 291 Gene3D G3DSA:3.40.830.10 5 290 1.1E-69 T 13-10-2018 trd_1688 815e008377b2008e22e62b5253c12d74 291 SUPERFAMILY SSF53213 30 287 3.53E-22 T 13-10-2018 trd_1688 815e008377b2008e22e62b5253c12d74 291 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 33 280 2.0E-17 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 trd_1586 82f24183d0f74e675eca5a2944f7f5cf 429 Pfam PF05133 Phage portal protein, SPP1 Gp6-like 32 424 6.5E-20 T 13-10-2018 IPR021145 Portal protein trd_A0693 86162e126023e8d73230461ab15c12a5 234 Gene3D G3DSA:3.40.50.2020 21 234 1.4E-63 T 13-10-2018 trd_A0693 86162e126023e8d73230461ab15c12a5 234 SUPERFAMILY SSF53271 29 232 3.12E-51 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_A0693 86162e126023e8d73230461ab15c12a5 234 Pfam PF14681 Uracil phosphoribosyltransferase 30 233 5.0E-61 T 13-10-2018 trd_A0693 86162e126023e8d73230461ab15c12a5 234 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 28 234 1.3E-65 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 trd_1360 ae00b41def5eaeacd809fb1b6c2f476f 187 Gene3D G3DSA:2.40.128.110 12 187 2.6E-62 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily trd_1360 ae00b41def5eaeacd809fb1b6c2f476f 187 Pfam PF04264 YceI-like domain 14 180 1.1E-50 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like trd_1360 ae00b41def5eaeacd809fb1b6c2f476f 187 SUPERFAMILY SSF101874 12 184 6.28E-64 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily trd_1360 ae00b41def5eaeacd809fb1b6c2f476f 187 SMART SM00867 13 182 1.6E-79 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like trd_1461 1cd4091b05b8a8b35c55c018c1f69b05 334 Gene3D G3DSA:3.40.50.720 3 137 1.8E-18 T 13-10-2018 trd_1461 1cd4091b05b8a8b35c55c018c1f69b05 334 SUPERFAMILY SSF51735 6 145 6.27E-14 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1461 1cd4091b05b8a8b35c55c018c1f69b05 334 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 8 81 1.7E-7 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 trd_A0780 879a22be217747c7d0bd7c427503b469 604 Pfam PF00391 PEP-utilising enzyme, mobile domain 527 598 1.6E-22 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 trd_A0780 879a22be217747c7d0bd7c427503b469 604 SUPERFAMILY SSF52009 496 602 2.22E-28 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 trd_A0780 879a22be217747c7d0bd7c427503b469 604 Gene3D G3DSA:3.50.30.10 499 603 1.3E-30 T 13-10-2018 trd_A0463 63d5323aac4d39b97f5b3748d38eeef7 400 TIGRFAM TIGR02221 cas_TM1812: CRISPR-associated protein, TM1812 family 59 182 1.3E-27 T 13-10-2018 IPR011742 CRISPR-associated protein, TM1812 trd_A0463 63d5323aac4d39b97f5b3748d38eeef7 400 SUPERFAMILY SSF160980 9 125 1.96E-6 T 13-10-2018 trd_A0463 63d5323aac4d39b97f5b3748d38eeef7 400 TIGRFAM TIGR02549 CRISPR_DxTHG: CRISPR-associated DxTHG motif protein 101 121 2.7E-8 T 13-10-2018 IPR013383 CRISPR-associated protein DxTHG, conserved site trd_A0463 63d5323aac4d39b97f5b3748d38eeef7 400 Pfam PF09455 CRISPR-associated (Cas) DxTHG family 3 374 2.0E-68 T 13-10-2018 IPR019016 CRISPR-associated DxTHG protein trd_A0171 c9f957495805ffdb465031a94ff18dc2 306 SMART SM00382 28 208 6.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0171 c9f957495805ffdb465031a94ff18dc2 306 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_A0171 c9f957495805ffdb465031a94ff18dc2 306 Gene3D G3DSA:3.40.50.300 1 225 1.3E-61 T 13-10-2018 trd_A0171 c9f957495805ffdb465031a94ff18dc2 306 Pfam PF00005 ABC transporter 21 155 2.8E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0171 c9f957495805ffdb465031a94ff18dc2 306 SUPERFAMILY SSF52540 3 219 1.05E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_1162 167332b01be66301003af3fcf1ab5925 523 SUPERFAMILY SSF69593 296 488 1.83E-7 T 13-10-2018 trd_1162 167332b01be66301003af3fcf1ab5925 523 Pfam PF04240 Carotenoid biosynthesis protein 52 262 1.7E-65 T 13-10-2018 IPR007354 Carotene biosynthesis associated membrane protein trd_0947 fdcaa2f9ad22884b1b68c54cc76612b8 137 SUPERFAMILY SSF69754 3 99 3.92E-8 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like trd_0947 fdcaa2f9ad22884b1b68c54cc76612b8 137 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 13 98 2.1E-5 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 trd_0947 fdcaa2f9ad22884b1b68c54cc76612b8 137 Gene3D G3DSA:3.30.160.100 1 100 6.1E-5 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 15 69 4.3E-26 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 PIRSF PIRSF002211 10 71 7.4E-29 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 Gene3D G3DSA:3.30.1390.20 11 69 1.5E-26 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 12 69 20.354 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 ProSitePatterns PS00634 Ribosomal protein L30 signature. 33 65 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 Pfam PF00327 Ribosomal protein L30p/L7e 15 65 1.1E-18 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain trd_0967 7162bd28ef921b5ac486e0b5277b4abe 76 SUPERFAMILY SSF55129 13 70 6.93E-22 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily trd_1488 e41c28df8ef61e43f8217f6f81e68893 280 Gene3D G3DSA:3.40.50.880 14 272 2.1E-29 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like trd_A0548 93fe0d190bd58abf99e8cc5e8058b897 250 TIGRFAM TIGR01916 F420_cofE: coenzyme F420-0:L-glutamate ligase 6 250 3.3E-87 T 13-10-2018 IPR008225 Coenzyme F420:L-glutamate ligase GO:0043773|GO:0046872|GO:0051188 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 trd_A0548 93fe0d190bd58abf99e8cc5e8058b897 250 Pfam PF01996 F420-0:Gamma-glutamyl ligase 12 227 1.1E-58 T 13-10-2018 IPR002847 Coenzyme F420:L-glutamate ligase-like domain KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 trd_A0548 93fe0d190bd58abf99e8cc5e8058b897 250 Gene3D G3DSA:3.90.1660.10 57 250 8.0E-90 T 13-10-2018 trd_A0548 93fe0d190bd58abf99e8cc5e8058b897 250 Gene3D G3DSA:3.30.1330.100 8 236 8.0E-90 T 13-10-2018 trd_A0548 93fe0d190bd58abf99e8cc5e8058b897 250 SUPERFAMILY SSF144010 7 250 1.31E-77 T 13-10-2018 trd_0369 65212826c6ae279217bf4afdf4781850 366 Pfam PF07143 CrtC N-terminal lipocalin domain 66 222 4.8E-37 T 13-10-2018 IPR010791 AttH domain trd_0369 65212826c6ae279217bf4afdf4781850 366 SUPERFAMILY SSF159245 46 356 3.14E-78 T 13-10-2018 trd_0369 65212826c6ae279217bf4afdf4781850 366 Gene3D G3DSA:2.40.370.10 226 361 7.3E-43 T 13-10-2018 IPR023374 AttH-like domain superfamily trd_0369 65212826c6ae279217bf4afdf4781850 366 Pfam PF17186 Lipocalin-like domain 229 356 1.3E-37 T 13-10-2018 trd_0369 65212826c6ae279217bf4afdf4781850 366 Gene3D G3DSA:2.40.370.10 55 225 4.2E-39 T 13-10-2018 IPR023374 AttH-like domain superfamily trd_0450 fcbdc38f2bb15464e45436c817cd62dc 326 SUPERFAMILY SSF56112 72 270 3.27E-8 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily trd_0530 c879236c34b215da02b9b8715eff96e1 212 Pfam PF09347 Domain of unknown function (DUF1989) 23 185 1.1E-56 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 trd_A0207 61006fddede2f65ef2a39bd2b24b299e 230 Pfam PF07238 PilZ domain 108 218 2.5E-16 T 13-10-2018 IPR009875 PilZ domain GO:0035438 trd_A0207 61006fddede2f65ef2a39bd2b24b299e 230 Gene3D G3DSA:2.40.10.220 109 222 3.8E-17 T 13-10-2018 trd_A0207 61006fddede2f65ef2a39bd2b24b299e 230 SUPERFAMILY SSF141371 106 207 1.04E-6 T 13-10-2018 trd_A0813 055b0b7fccccdb5d1f872afcc544b058 380 Pfam PF14332 Domain of unknown function (DUF4388) 19 172 4.7E-19 T 13-10-2018 IPR025497 Domain of unknown function DUF4388 trd_0254 bf139ecdf2f3952080b59f51edab4ec2 251 Pfam PF12483 E3 Ubiquitin ligase 80 238 4.1E-42 T 13-10-2018 IPR022170 E3 Ubiquitin ligase, GIDE-type GO:0004842|GO:0006996|GO:0016567 MetaCyc: PWY-7511|Reactome: R-HSA-5689880 trd_A0637 9c40bc1dcd7835a265ad769aed371689 275 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 2.6E-12 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal trd_A0637 9c40bc1dcd7835a265ad769aed371689 275 SUPERFAMILY SSF52540 3 251 1.31E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0637 9c40bc1dcd7835a265ad769aed371689 275 SMART SM00382 28 237 4.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_A0637 9c40bc1dcd7835a265ad769aed371689 275 Pfam PF00005 ABC transporter 19 180 3.3E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_A0637 9c40bc1dcd7835a265ad769aed371689 275 Gene3D G3DSA:3.40.50.300 1 254 6.8E-60 T 13-10-2018 trd_0034 e5d7c3f41116869e3ab5b7b5ca7c9fa2 379 Pfam PF00296 Luciferase-like monooxygenase 14 341 1.5E-55 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 trd_0034 e5d7c3f41116869e3ab5b7b5ca7c9fa2 379 SUPERFAMILY SSF51679 10 347 3.14E-54 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_0034 e5d7c3f41116869e3ab5b7b5ca7c9fa2 379 Gene3D G3DSA:3.20.20.30 5 359 2.8E-72 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 trd_1563 08455cff901fba0ffeccc5678e038dd6 592 SUPERFAMILY SSF53187 15 444 2.7E-39 T 13-10-2018 trd_1563 08455cff901fba0ffeccc5678e038dd6 592 Gene3D G3DSA:3.50.30.30 73 221 1.1E-62 T 13-10-2018 trd_1563 08455cff901fba0ffeccc5678e038dd6 592 Pfam PF04389 Peptidase family M28 232 427 1.3E-14 T 13-10-2018 IPR007484 Peptidase M28 trd_1563 08455cff901fba0ffeccc5678e038dd6 592 Gene3D G3DSA:3.40.630.10 35 429 1.1E-62 T 13-10-2018 trd_1807 18494e741635c4787beca3311206185c 345 Pfam PF00676 Dehydrogenase E1 component 58 336 6.0E-74 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 trd_1807 18494e741635c4787beca3311206185c 345 SUPERFAMILY SSF52518 12 343 7.81E-89 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1807 18494e741635c4787beca3311206185c 345 Gene3D G3DSA:3.40.50.970 7 345 2.7E-111 T 13-10-2018 trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 Pfam PF01668 SmpB protein 15 156 7.0E-58 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 1.0E-39 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 3.3E-54 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 67.207 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 SUPERFAMILY SSF74982 9 139 9.16E-49 T 13-10-2018 IPR023620 Small protein B trd_0238 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 Gene3D G3DSA:2.40.280.10 7 136 8.8E-49 T 13-10-2018 IPR023620 Small protein B trd_0326 25cba321c3cf3fddac13d6d89cb9fca9 70 Pfam PF12831 FAD dependent oxidoreductase 1 65 5.4E-13 T 13-10-2018 IPR039649 Digeranylgeranylglycerophospholipid reductase, N-terminal trd_A0465 d13f48a49926e594e4bae50766a06c72 334 Pfam PF05685 Putative restriction endonuclease 167 282 9.7E-6 T 13-10-2018 IPR008538 Domain of unknown function DUF820 trd_A0465 d13f48a49926e594e4bae50766a06c72 334 SUPERFAMILY SSF52980 214 309 3.54E-9 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 trd_A0465 d13f48a49926e594e4bae50766a06c72 334 Gene3D G3DSA:3.90.1570.10 210 311 3.7E-9 T 13-10-2018 trd_0407 cf56be993de635bcc0eee6a04328ddd4 588 SUPERFAMILY SSF103647 508 566 1.83E-5 T 13-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 trd_0265 c140d094aceca3311751b46c156bbf3d 419 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 2 264 6.0E-42 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 trd_0265 c140d094aceca3311751b46c156bbf3d 419 SUPERFAMILY SSF56300 2 332 9.39E-51 T 13-10-2018 trd_0265 c140d094aceca3311751b46c156bbf3d 419 Gene3D G3DSA:3.60.21.10 1 278 4.8E-56 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_0265 c140d094aceca3311751b46c156bbf3d 419 Pfam PF00149 Calcineurin-like phosphoesterase 2 235 1.3E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_0617 f49e640e1976ecda33e4725306787186 583 Gene3D G3DSA:3.20.20.80 263 583 5.6E-54 T 13-10-2018 trd_0617 f49e640e1976ecda33e4725306787186 583 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 251 404 9.1E-9 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 trd_0617 f49e640e1976ecda33e4725306787186 583 SUPERFAMILY SSF51445 248 581 6.49E-59 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1771 bc6980874a663b786d205d0428ab9104 511 SUPERFAMILY SSF48452 11 116 9.16E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1771 bc6980874a663b786d205d0428ab9104 511 SUPERFAMILY SSF48452 129 227 3.45E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1771 bc6980874a663b786d205d0428ab9104 511 Pfam PF14559 Tetratricopeptide repeat 52 102 3.7E-7 T 13-10-2018 trd_1771 bc6980874a663b786d205d0428ab9104 511 Gene3D G3DSA:1.25.40.10 6 279 9.0E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_A0257 75cc01f6ac1f4650816f3e0a062f9635 303 Pfam PF10646 Sporulation and spore germination 72 180 4.6E-21 T 13-10-2018 IPR019606 GerMN domain trd_A0257 75cc01f6ac1f4650816f3e0a062f9635 303 SMART SM00909 94 184 1.7E-25 T 13-10-2018 IPR019606 GerMN domain trd_A0257 75cc01f6ac1f4650816f3e0a062f9635 303 Pfam PF10648 Immunoglobulin-like domain of bacterial spore germination 206 290 6.7E-25 T 13-10-2018 IPR018911 Bacterial spore germination, immunoglobulin-like domain trd_A0430 0d569e0ee2857193a2c8f85d4276980b 461 SMART SM01230 122 378 2.0E-108 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0430 0d569e0ee2857193a2c8f85d4276980b 461 Gene3D G3DSA:3.30.590.10 125 460 2.4E-105 T 13-10-2018 trd_A0430 0d569e0ee2857193a2c8f85d4276980b 461 SUPERFAMILY SSF54368 10 119 5.62E-14 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0430 0d569e0ee2857193a2c8f85d4276980b 461 SUPERFAMILY SSF55931 122 459 1.77E-107 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 trd_A0430 0d569e0ee2857193a2c8f85d4276980b 461 Pfam PF00120 Glutamine synthetase, catalytic domain 124 457 1.4E-106 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 trd_A0671 9d9c4f44821b22e22371e06739ec9a39 145 Gene3D G3DSA:1.25.10.10 12 143 1.0E-20 T 13-10-2018 IPR011989 Armadillo-like helical trd_A0671 9d9c4f44821b22e22371e06739ec9a39 145 SUPERFAMILY SSF48371 15 131 1.6E-17 T 13-10-2018 IPR016024 Armadillo-type fold trd_A0671 9d9c4f44821b22e22371e06739ec9a39 145 SMART SM00567 E-Z type HEAT repeats 58 87 1.3 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_A0671 9d9c4f44821b22e22371e06739ec9a39 145 SMART SM00567 E-Z type HEAT repeats 25 54 39.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_A0671 9d9c4f44821b22e22371e06739ec9a39 145 SMART SM00567 E-Z type HEAT repeats 89 118 23.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 trd_A0671 9d9c4f44821b22e22371e06739ec9a39 145 Pfam PF13646 HEAT repeats 59 131 8.1E-13 T 13-10-2018 trd_A0371 b696828b3fa88c6ca487b43dd552eb28 157 Pfam PF01899 Na+/H+ ion antiporter subunit 7 155 9.2E-39 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 trd_A0371 b696828b3fa88c6ca487b43dd552eb28 157 PIRSF PIRSF019239 1 157 9.8E-39 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 trd_A0674 8f7d72cc5cd4a1e53220244813fde989 469 Pfam PF13559 Domain of unknown function (DUF4129) 391 459 2.2E-9 T 13-10-2018 IPR025403 Domain of unknown function DUF4129 trd_A0913 45eaa290552e28940ad1ec21690e5c36 134 PIRSF PIRSF016498 5 134 1.2E-33 T 13-10-2018 IPR018699 Protein of unknown function DUF2203 trd_A0913 45eaa290552e28940ad1ec21690e5c36 134 Pfam PF09969 Uncharacterized conserved protein (DUF2203) 7 132 1.7E-38 T 13-10-2018 IPR018699 Protein of unknown function DUF2203 trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 12 87 2.1E-20 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 SUPERFAMILY SSF55315 8 85 2.59E-18 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 10 246 1.7E-58 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 SMART SM00967 12 88 1.9E-21 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 SUPERFAMILY SSF75217 76 249 6.28E-46 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 Gene3D G3DSA:3.30.1330.30 4 84 5.4E-13 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 Pfam PF00588 SpoU rRNA Methylase family 101 242 3.9E-35 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 trd_0696 17a982932ac6ffd12cf243ccf94d5b58 261 Gene3D G3DSA:3.40.1280.10 85 248 2.3E-49 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 34 177 9.0E-59 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 Gene3D G3DSA:3.30.230.40 1 92 1.5E-34 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 64 77 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 Gene3D G3DSA:3.30.230.40 93 200 6.2E-35 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 159 171 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 SUPERFAMILY SSF54211 5 87 4.05E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 SUPERFAMILY SSF54211 90 182 4.4E-30 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold trd_0434 80b32aff84081b6b60d9c4ee4536e387 202 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 5 198 38.75 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 trd_0069 adf929b8478abee0651a4f6096b79a9d 161 Pfam PF03477 ATP cone domain 50 135 1.3E-19 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 trd_0069 adf929b8478abee0651a4f6096b79a9d 161 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 154 79.862 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 trd_0069 adf929b8478abee0651a4f6096b79a9d 161 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 1.4E-57 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 trd_A0278 2becc3d6ee8b0981f18fa3ea084698cd 1024 Pfam PF04465 Protein of unknown function (DUF499) 125 426 1.3E-22 T 13-10-2018 IPR007555 Protein of unknown function DUF499 trd_A0278 2becc3d6ee8b0981f18fa3ea084698cd 1024 Pfam PF13287 Fn3 associated 849 898 2.3E-9 T 13-10-2018 IPR026876 Fn3 associated repeat trd_1504 f301a342c7f99166f4cb687ffd5358c3 285 Pfam PF12679 ABC-2 family transporter protein 5 285 3.0E-18 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 trd_1842 f9a0ce36eb5f3f24909a33d008feee90 181 Pfam PF01467 Cytidylyltransferase-like 26 120 1.5E-13 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_1842 f9a0ce36eb5f3f24909a33d008feee90 181 SUPERFAMILY SSF52374 22 162 1.45E-21 T 13-10-2018 trd_1842 f9a0ce36eb5f3f24909a33d008feee90 181 Gene3D G3DSA:3.40.50.620 10 167 4.1E-38 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1842 f9a0ce36eb5f3f24909a33d008feee90 181 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 24 89 2.5E-14 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 trd_A0804 49624f8d9fb1b5e20637f67f1fc5242e 225 SUPERFAMILY SSF55469 27 221 1.44E-49 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 trd_A0804 49624f8d9fb1b5e20637f67f1fc5242e 225 Pfam PF00881 Nitroreductase family 32 204 5.6E-35 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 trd_A0804 49624f8d9fb1b5e20637f67f1fc5242e 225 Gene3D G3DSA:3.40.109.10 21 223 1.4E-59 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 trd_A0783 c919d8d606ce488e5d37ce336c48e1e1 299 SUPERFAMILY SSF51735 10 168 8.69E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0783 c919d8d606ce488e5d37ce336c48e1e1 299 Gene3D G3DSA:3.40.50.720 3 163 1.5E-34 T 13-10-2018 trd_A0783 c919d8d606ce488e5d37ce336c48e1e1 299 SUPERFAMILY SSF48179 170 273 6.8E-23 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 trd_A0783 c919d8d606ce488e5d37ce336c48e1e1 299 Gene3D G3DSA:1.10.1040.20 169 273 1.9E-22 T 13-10-2018 IPR037108 TM1727-like, C-terminal domain superfamily trd_A0783 c919d8d606ce488e5d37ce336c48e1e1 299 Pfam PF10727 Rossmann-like domain 4 121 4.2E-14 T 13-10-2018 IPR019665 Putative oxidoreductase/dehydrogenase, Rossmann-like domain trd_A0783 c919d8d606ce488e5d37ce336c48e1e1 299 Pfam PF10728 Domain of unknown function (DUF2520) 138 266 5.2E-34 T 13-10-2018 IPR018931 Domain of unknown function DUF2520 trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 230 310 1.1E-6 T 13-10-2018 IPR012505 YbbR-like trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 325 403 2.3E-6 T 13-10-2018 IPR012505 YbbR-like trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 131 215 2.0E-11 T 13-10-2018 IPR012505 YbbR-like trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 46 122 5.0E-6 T 13-10-2018 IPR012505 YbbR-like trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Gene3D G3DSA:2.170.120.40 231 313 5.1E-7 T 13-10-2018 trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Gene3D G3DSA:2.170.120.40 133 218 1.4E-13 T 13-10-2018 trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Gene3D G3DSA:2.170.120.30 318 407 2.1E-18 T 13-10-2018 trd_0687 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Gene3D G3DSA:2.170.120.30 28 132 2.0E-19 T 13-10-2018 trd_A0554 0894cc4b4f35a5bff5784c43e785d549 275 SUPERFAMILY SSF51658 14 268 3.51E-33 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily trd_A0554 0894cc4b4f35a5bff5784c43e785d549 275 Gene3D G3DSA:3.20.20.150 3 269 6.1E-42 T 13-10-2018 trd_A0554 0894cc4b4f35a5bff5784c43e785d549 275 Pfam PF01261 Xylose isomerase-like TIM barrel 22 210 8.8E-22 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain trd_1750 2273df7ac90a6b698143b489a76cefca 243 Gene3D G3DSA:3.30.110.170 47 240 1.3E-52 T 13-10-2018 trd_1750 2273df7ac90a6b698143b489a76cefca 243 Gene3D G3DSA:3.30.70.2970 57 163 1.3E-52 T 13-10-2018 trd_1750 2273df7ac90a6b698143b489a76cefca 243 Pfam PF04402 Protein of unknown function (DUF541) 45 239 4.6E-41 T 13-10-2018 IPR007497 Protein of unknown function DUF541 trd_1918 db363ee88e8c37559531df0f46486dcd 271 SUPERFAMILY SSF56529 57 263 2.88E-27 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_1918 db363ee88e8c37559531df0f46486dcd 271 Gene3D G3DSA:3.90.850.10 61 271 8.4E-57 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 trd_1918 db363ee88e8c37559531df0f46486dcd 271 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 96 264 6.0E-16 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 trd_1609 7958542d9b3fb321157cbcee556cbe7c 595 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 128 500 1.2E-57 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_1609 7958542d9b3fb321157cbcee556cbe7c 595 Gene3D G3DSA:3.90.76.10 117 240 5.9E-98 T 13-10-2018 trd_1609 7958542d9b3fb321157cbcee556cbe7c 595 PIRSF PIRSF002741 108 581 1.4E-60 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1609 7958542d9b3fb321157cbcee556cbe7c 595 Gene3D G3DSA:3.40.190.10 114 563 5.9E-98 T 13-10-2018 trd_1609 7958542d9b3fb321157cbcee556cbe7c 595 Gene3D G3DSA:3.10.105.10 340 554 5.9E-98 T 13-10-2018 trd_1609 7958542d9b3fb321157cbcee556cbe7c 595 SUPERFAMILY SSF53850 115 573 1.09E-84 T 13-10-2018 trd_1324 aa1b1aaaab4d43fd35019004e31e59f7 167 SUPERFAMILY SSF55083 2 150 1.96E-54 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 trd_1324 aa1b1aaaab4d43fd35019004e31e59f7 167 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 9.1E-44 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 trd_1324 aa1b1aaaab4d43fd35019004e31e59f7 167 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 1.9E-37 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 trd_1324 aa1b1aaaab4d43fd35019004e31e59f7 167 Gene3D G3DSA:3.30.70.560 2 163 1.1E-57 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 trd_A0015 10d932fa85da6f2848e3031ac1f2869a 210 Gene3D G3DSA:3.40.109.10 4 188 7.0E-49 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 trd_A0015 10d932fa85da6f2848e3031ac1f2869a 210 Pfam PF00881 Nitroreductase family 16 166 4.5E-31 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 trd_A0015 10d932fa85da6f2848e3031ac1f2869a 210 PIRSF PIRSF000232 7 192 7.4E-54 T 13-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like trd_A0015 10d932fa85da6f2848e3031ac1f2869a 210 SUPERFAMILY SSF55469 8 187 3.4E-43 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 trd_A0152 1c23d9bf336151d6519cb9446dfd7cca 159 Gene3D G3DSA:1.20.120.450 2 157 2.8E-22 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_A0152 1c23d9bf336151d6519cb9446dfd7cca 159 Pfam PF12867 DinB superfamily 17 146 3.0E-18 T 13-10-2018 IPR024775 DinB-like domain trd_A0152 1c23d9bf336151d6519cb9446dfd7cca 159 SUPERFAMILY SSF109854 4 152 1.42E-23 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_1511 833c4e43bfc96cc8e21f9fbef228f49e 221 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 25 209 1.1E-60 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 trd_1511 833c4e43bfc96cc8e21f9fbef228f49e 221 Gene3D G3DSA:3.10.300.10 16 218 2.1E-62 T 13-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 trd_1511 833c4e43bfc96cc8e21f9fbef228f49e 221 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 23 212 29.502 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 trd_1511 833c4e43bfc96cc8e21f9fbef228f49e 221 SUPERFAMILY SSF50486 19 217 1.26E-57 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 trd_1511 833c4e43bfc96cc8e21f9fbef228f49e 221 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 21 212 5.5E-49 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 trd_1352 c0f3408fedadbb9bf377183f11795868 395 Gene3D G3DSA:3.20.70.20 14 387 4.8E-104 T 13-10-2018 trd_1352 c0f3408fedadbb9bf377183f11795868 395 SUPERFAMILY SSF51998 19 375 2.93E-87 T 13-10-2018 trd_1352 c0f3408fedadbb9bf377183f11795868 395 Pfam PF05167 Uncharacterised ACR (DUF711) 18 362 4.6E-85 T 13-10-2018 IPR007841 Uncharacterised protein family UPF0210 trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 6 173 8.5E-41 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 282 7.7E-16 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 SUPERFAMILY SSF55447 178 285 6.54E-22 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 SMART SM01092 180 283 9.1E-19 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 Gene3D G3DSA:3.30.390.50 179 286 4.2E-24 T 13-10-2018 trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 Gene3D G3DSA:3.30.465.10 1 174 6.5E-45 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 trd_A0073 7fd65468b64990b0522dddbdc2c1346d 297 SUPERFAMILY SSF56176 2 173 1.2E-44 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 trd_0373 e4ac506c5c0df8ae6c836a9a592ce55d 157 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 67 157 7.7E-9 T 13-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 trd_0373 e4ac506c5c0df8ae6c836a9a592ce55d 157 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 133 150 - T 13-10-2018 IPR028871 Blue (type 1) copper protein, binding site trd_0373 e4ac506c5c0df8ae6c836a9a592ce55d 157 SUPERFAMILY SSF49503 41 156 4.86E-23 T 13-10-2018 IPR008972 Cupredoxin trd_0373 e4ac506c5c0df8ae6c836a9a592ce55d 157 Gene3D G3DSA:2.60.40.420 110 157 3.6E-14 T 13-10-2018 IPR008972 Cupredoxin trd_0373 e4ac506c5c0df8ae6c836a9a592ce55d 157 Gene3D G3DSA:2.60.40.420 65 109 1.4E-7 T 13-10-2018 IPR008972 Cupredoxin trd_0373 e4ac506c5c0df8ae6c836a9a592ce55d 157 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 74 154 0.002 T 13-10-2018 trd_0379 04a1c168606741a15f9723043f55b1f7 445 Pfam PF01458 Uncharacterized protein family (UPF0051) 194 418 6.2E-74 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 trd_0379 04a1c168606741a15f9723043f55b1f7 445 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 161 434 1.4E-80 T 13-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 trd_0379 04a1c168606741a15f9723043f55b1f7 445 SUPERFAMILY SSF101960 15 443 3.01E-123 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily trd_0875 4ea1d99716ce8e0d10ee52dd0026e676 283 SUPERFAMILY SSF161098 26 280 1.87E-56 T 13-10-2018 IPR035906 MetI-like superfamily trd_0875 4ea1d99716ce8e0d10ee52dd0026e676 283 Gene3D G3DSA:1.10.3720.10 26 283 2.0E-57 T 13-10-2018 IPR035906 MetI-like superfamily trd_0875 4ea1d99716ce8e0d10ee52dd0026e676 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 279 1.7E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0195 5257a7602e1fd3cb0494cfdb63bdb1f1 289 SUPERFAMILY SSF53167 7 279 2.92E-68 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 trd_0195 5257a7602e1fd3cb0494cfdb63bdb1f1 289 Gene3D G3DSA:3.40.50.1580 6 279 2.7E-82 T 13-10-2018 trd_0195 5257a7602e1fd3cb0494cfdb63bdb1f1 289 Pfam PF01048 Phosphorylase superfamily 29 270 7.1E-40 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 trd_0195 5257a7602e1fd3cb0494cfdb63bdb1f1 289 PIRSF PIRSF000477 2 276 6.3E-70 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 trd_0195 5257a7602e1fd3cb0494cfdb63bdb1f1 289 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 29 269 1.3E-66 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 trd_0961 39b823ad60a28246c30b286ff91c29bf 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 1.3E-21 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0961 39b823ad60a28246c30b286ff91c29bf 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.124 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0961 39b823ad60a28246c30b286ff91c29bf 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0961 39b823ad60a28246c30b286ff91c29bf 37 SUPERFAMILY SSF57840 1 37 3.79E-16 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_0961 39b823ad60a28246c30b286ff91c29bf 37 Pfam PF00444 Ribosomal protein L36 1 37 1.5E-17 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1883 5208c979e02086000ca440b4ba1ac796 399 SUPERFAMILY SSF103473 15 386 3.53E-40 T 13-10-2018 IPR036259 MFS transporter superfamily trd_1883 5208c979e02086000ca440b4ba1ac796 399 Gene3D G3DSA:1.20.1250.20 12 200 5.1E-18 T 13-10-2018 trd_1883 5208c979e02086000ca440b4ba1ac796 399 Gene3D G3DSA:1.20.1250.20 207 388 4.1E-14 T 13-10-2018 trd_1883 5208c979e02086000ca440b4ba1ac796 399 Pfam PF07690 Major Facilitator Superfamily 20 264 2.9E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_1073 709d39445e3129d53fd74cf0d9ac356d 284 Pfam PF14257 Domain of unknown function (DUF4349) 16 272 2.3E-53 T 13-10-2018 IPR025645 Domain of unknown function DUF4349 trd_A0803 960543fc9b4d700716aeeacbe1c08e39 303 SUPERFAMILY SSF103481 183 287 3.14E-8 T 13-10-2018 trd_A0803 960543fc9b4d700716aeeacbe1c08e39 303 SUPERFAMILY SSF103481 37 133 6.15E-12 T 13-10-2018 trd_A0803 960543fc9b4d700716aeeacbe1c08e39 303 Pfam PF00892 EamA-like transporter family 3 131 3.4E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0803 960543fc9b4d700716aeeacbe1c08e39 303 Pfam PF00892 EamA-like transporter family 150 285 1.1E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 138 2.2E-21 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 Gene3D G3DSA:3.40.350.10 1 136 1.6E-35 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 SUPERFAMILY SSF55920 138 363 2.75E-70 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 SUPERFAMILY SSF53092 3 136 7.85E-23 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 Pfam PF00557 Metallopeptidase family M24 146 349 1.3E-55 T 13-10-2018 IPR000994 Peptidase M24 trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 295 307 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site trd_A0573 399eaaa7e83f28e963b3184661af8bc3 366 Gene3D G3DSA:3.90.230.10 137 365 5.6E-76 T 13-10-2018 trd_A0892 981f9ae11802e59b9e7261acfc3fa7b6 469 Pfam PF01266 FAD dependent oxidoreductase 38 405 7.8E-57 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_A0892 981f9ae11802e59b9e7261acfc3fa7b6 469 Gene3D G3DSA:3.30.9.10 133 366 1.1E-71 T 13-10-2018 trd_A0892 981f9ae11802e59b9e7261acfc3fa7b6 469 Gene3D G3DSA:3.50.50.60 38 406 1.1E-71 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0892 981f9ae11802e59b9e7261acfc3fa7b6 469 SUPERFAMILY SSF51905 37 422 9.5E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0185 bf0d89f239968ba72be28a1f1adc3ed5 285 Pfam PF00950 ABC 3 transport family 14 266 3.0E-73 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 trd_A0185 bf0d89f239968ba72be28a1f1adc3ed5 285 SUPERFAMILY SSF81345 4 265 1.31E-38 T 13-10-2018 IPR037294 ABC transporter, BtuC-like trd_1391 f8e433c51f09b450c3459762b04b8bad 164 SMART SM00903 11 151 2.2E-49 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 trd_1391 f8e433c51f09b450c3459762b04b8bad 164 SUPERFAMILY SSF50475 2 152 1.08E-43 T 13-10-2018 trd_1391 f8e433c51f09b450c3459762b04b8bad 164 Gene3D G3DSA:2.30.110.10 1 159 4.5E-44 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_1391 f8e433c51f09b450c3459762b04b8bad 164 Pfam PF01613 Flavin reductase like domain 11 150 2.4E-33 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 trd_0774 a88934cbbc3882586698cbd5fb3f2339 130 SUPERFAMILY SSF64376 27 111 5.62E-24 T 13-10-2018 IPR035931 YlxR-like superfamily trd_0774 a88934cbbc3882586698cbd5fb3f2339 130 Pfam PF04296 Protein of unknown function (DUF448) 32 104 3.6E-24 T 13-10-2018 IPR007393 Domain of unknown function DUF448 trd_0774 a88934cbbc3882586698cbd5fb3f2339 130 Gene3D G3DSA:3.30.1230.10 23 118 4.7E-28 T 13-10-2018 IPR035931 YlxR-like superfamily trd_1082 f2e5ede491a79a3a5f0205822230bbd5 159 Gene3D G3DSA:3.90.960.10 3 158 4.5E-41 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 trd_1082 f2e5ede491a79a3a5f0205822230bbd5 159 SUPERFAMILY SSF55826 8 155 2.22E-35 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 trd_1082 f2e5ede491a79a3a5f0205822230bbd5 159 Pfam PF04073 Aminoacyl-tRNA editing domain 27 147 4.1E-30 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 trd_0902 044ef0b36136204044763c9380024173 396 SUPERFAMILY SSF53850 98 320 3.8E-26 T 13-10-2018 trd_0902 044ef0b36136204044763c9380024173 396 Pfam PF09084 NMT1/THI5 like 96 315 3.6E-19 T 13-10-2018 IPR015168 SsuA/THI5-like trd_0902 044ef0b36136204044763c9380024173 396 Gene3D G3DSA:3.40.190.10 199 395 1.5E-21 T 13-10-2018 trd_0902 044ef0b36136204044763c9380024173 396 Gene3D G3DSA:3.40.190.10 83 185 3.8E-11 T 13-10-2018 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 1.4E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 1.4E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 1.4E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 Gene3D G3DSA:3.40.50.1820 11 274 3.4E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0259 89e5ce7561c399ad800abca525ae522f 278 SUPERFAMILY SSF53474 4 274 4.75E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0259 89e5ce7561c399ad800abca525ae522f 278 Pfam PF00561 alpha/beta hydrolase fold 24 260 2.0E-28 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00412 Epoxide hydrolase signature 110 123 2.6E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00412 Epoxide hydrolase signature 217 233 2.6E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00412 Epoxide hydrolase signature 30 48 2.6E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00412 Epoxide hydrolase signature 96 109 2.6E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00412 Epoxide hydrolase signature 50 65 2.6E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 PRINTS PR00412 Epoxide hydrolase signature 249 271 2.6E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 15 273 35.185 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 trd_A0259 89e5ce7561c399ad800abca525ae522f 278 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 24 272 5.5E-78 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 trd_1262 3646a0e376df1aff8f7271439f73a69b 143 Gene3D G3DSA:2.60.40.790 15 141 1.0E-28 T 13-10-2018 IPR008978 HSP20-like chaperone trd_1262 3646a0e376df1aff8f7271439f73a69b 143 SUPERFAMILY SSF49764 31 141 1.19E-29 T 13-10-2018 IPR008978 HSP20-like chaperone trd_1262 3646a0e376df1aff8f7271439f73a69b 143 Pfam PF00011 Hsp20/alpha crystallin family 43 140 1.1E-18 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain trd_A0510 fbf6159f4ca8801b0e2d7a76d136b651 179 Pfam PF04893 Yip1 domain 35 161 1.3E-10 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 trd_1051 f060e5742ea2f1db6a20435d3c76fbe7 479 Pfam PF13490 Putative zinc-finger 6 40 3.5E-12 T 13-10-2018 IPR027383 Putative zinc-finger trd_1051 f060e5742ea2f1db6a20435d3c76fbe7 479 Gene3D G3DSA:1.10.10.1320 6 97 3.7E-10 T 13-10-2018 trd_A0879 fb7fa4f50ca3f46f78bcbe0d32fed742 315 SUPERFAMILY SSF51726 5 313 8.5E-41 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_A0879 fb7fa4f50ca3f46f78bcbe0d32fed742 315 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 61 311 7.8E-26 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 trd_A0879 fb7fa4f50ca3f46f78bcbe0d32fed742 315 Gene3D G3DSA:3.20.20.210 1 313 5.0E-53 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_1908 fb1880e80bdea59e2596db136f6fd8de 528 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 82 234 1.1E-7 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like trd_0740 64741d4399b06136ef47b588b310cb0d 67 Gene3D G3DSA:3.40.1190.10 15 66 2.6E-8 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_0740 64741d4399b06136ef47b588b310cb0d 67 SUPERFAMILY SSF53623 14 58 1.22E-9 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 trd_1541 7ea2ff721540b0c5e40aba56b21487f9 275 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 80 244 1.2E-49 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 trd_1541 7ea2ff721540b0c5e40aba56b21487f9 275 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 76 250 9.9E-40 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 trd_A0882 ca571e20a3b0b5a06afdb4333c3f159d 245 Pfam PF14378 PAP2 superfamily 35 215 4.4E-49 T 13-10-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 trd_A0882 ca571e20a3b0b5a06afdb4333c3f159d 245 Gene3D G3DSA:1.20.144.10 144 234 2.0E-7 T 13-10-2018 trd_A0882 ca571e20a3b0b5a06afdb4333c3f159d 245 SUPERFAMILY SSF48317 57 225 4.14E-9 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily trd_1597 d910b51e5de21e5136f8baba8df65bdd 120 Pfam PF03779 SPW repeat 74 114 4.2E-7 T 13-10-2018 IPR005530 SPW repeat trd_1972 9aa3b9635dd0e90d5a698c2194647ade 334 Gene3D G3DSA:1.20.1630.10 22 248 1.2E-28 T 13-10-2018 trd_1972 9aa3b9635dd0e90d5a698c2194647ade 334 Pfam PF03916 Polysulphide reductase, NrfD 36 316 5.3E-29 T 13-10-2018 IPR005614 NrfD family trd_0811 9c04aff3ab283e9dcd434849efbfa50d 430 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 45 417 1.9E-136 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 trd_0811 9c04aff3ab283e9dcd434849efbfa50d 430 Pfam PF01702 Queuine tRNA-ribosyltransferase 171 411 7.3E-79 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 trd_0811 9c04aff3ab283e9dcd434849efbfa50d 430 SUPERFAMILY SSF51713 44 415 6.15E-143 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 trd_0811 9c04aff3ab283e9dcd434849efbfa50d 430 Gene3D G3DSA:3.20.20.105 34 420 2.3E-157 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 trd_0811 9c04aff3ab283e9dcd434849efbfa50d 430 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 47 417 1.1E-141 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 trd_0811 9c04aff3ab283e9dcd434849efbfa50d 430 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 43 414 50.881 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 trd_1198 30e754dcac332644a08380a276f46045 361 Pfam PF08735 Putative pyruvate format-lyase activating enzyme (DUF1786) 64 314 2.2E-82 T 13-10-2018 IPR014846 Protein of unknown function DUF1786, putative pyruvate format-lyase activating enzyme trd_A0764 2666ca7cdd59f542cadc2fde81d8a691 260 Pfam PF13614 AAA domain 4 178 1.0E-46 T 13-10-2018 IPR025669 AAA domain trd_A0764 2666ca7cdd59f542cadc2fde81d8a691 260 SUPERFAMILY SSF52540 3 254 6.53E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0764 2666ca7cdd59f542cadc2fde81d8a691 260 Gene3D G3DSA:3.40.50.300 1 257 1.7E-70 T 13-10-2018 trd_1030 7020a0248b32ca3c434928cdde4b1e71 541 SUPERFAMILY SSF69304 62 309 4.84E-21 T 13-10-2018 trd_1030 7020a0248b32ca3c434928cdde4b1e71 541 Gene3D G3DSA:2.120.10.30 145 340 2.5E-10 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_1030 7020a0248b32ca3c434928cdde4b1e71 541 TIGRFAM TIGR04275 beta_prop_Msarc: beta propeller repeat 173 211 8.0E-14 T 13-10-2018 IPR027618 Beta propeller repeat, Msarc-type trd_0361 8b417de946ef45bb6899ae7543735e20 220 Pfam PF13483 Beta-lactamase superfamily domain 5 186 9.0E-36 T 13-10-2018 trd_0361 8b417de946ef45bb6899ae7543735e20 220 SUPERFAMILY SSF56281 4 192 1.33E-26 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_0361 8b417de946ef45bb6899ae7543735e20 220 Gene3D G3DSA:3.60.15.10 1 201 7.5E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 TIGRFAM TIGR01178 ade: adenine deaminase 28 566 1.0E-165 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 Pfam PF01979 Amidohydrolase family 76 348 1.1E-20 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 SUPERFAMILY SSF51338 22 362 3.6E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 Gene3D G3DSA:3.20.20.140 79 319 2.4E-122 T 13-10-2018 trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 SUPERFAMILY SSF51556 80 322 2.8E-26 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 Gene3D G3DSA:2.30.40.10 20 356 2.4E-122 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 Hamap MF_01518 Adenine deaminase [ade]. 28 569 35.101 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 trd_1190 2150c2cb115b52acafbd55a38f4c72c0 569 Pfam PF13382 Adenine deaminase C-terminal domain 404 566 4.8E-63 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 trd_0237 aa00524ba3d3f5110cdfed931575c456 269 Gene3D G3DSA:3.40.50.150 37 249 1.2E-52 T 13-10-2018 trd_0237 aa00524ba3d3f5110cdfed931575c456 269 Gene3D G3DSA:2.20.25.570 146 216 1.2E-52 T 13-10-2018 trd_0237 aa00524ba3d3f5110cdfed931575c456 269 Pfam PF13649 Methyltransferase domain 40 138 4.5E-21 T 13-10-2018 trd_0237 aa00524ba3d3f5110cdfed931575c456 269 SUPERFAMILY SSF53335 7 257 2.69E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_0507 a549e02d3e812c7ec8a04bc0dbc6486a 280 Gene3D G3DSA:3.40.50.10320 11 268 2.3E-56 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0507 a549e02d3e812c7ec8a04bc0dbc6486a 280 Pfam PF02585 GlcNAc-PI de-N-acetylase 16 163 4.6E-15 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 trd_0507 a549e02d3e812c7ec8a04bc0dbc6486a 280 SUPERFAMILY SSF102588 13 269 1.14E-31 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 trd_0553 a9f875f18e54932132416258ac3bca25 359 Gene3D G3DSA:1.10.443.10 166 356 4.3E-48 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 trd_0553 a9f875f18e54932132416258ac3bca25 359 Gene3D G3DSA:1.10.150.130 53 152 9.5E-24 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal trd_0553 a9f875f18e54932132416258ac3bca25 359 Pfam PF00589 Phage integrase family 161 341 8.4E-21 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 trd_0553 a9f875f18e54932132416258ac3bca25 359 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 56 112 4.3E-12 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 trd_0553 a9f875f18e54932132416258ac3bca25 359 SUPERFAMILY SSF56349 55 344 1.0E-64 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_0194 e4bc6d4c47274a178cee38d41d2616cc 428 SUPERFAMILY SSF56796 18 424 6.28E-103 T 13-10-2018 trd_0194 e4bc6d4c47274a178cee38d41d2616cc 428 Gene3D G3DSA:3.40.50.1970 9 194 5.0E-52 T 13-10-2018 trd_0194 e4bc6d4c47274a178cee38d41d2616cc 428 Gene3D G3DSA:1.20.1090.10 196 425 1.7E-62 T 13-10-2018 trd_0194 e4bc6d4c47274a178cee38d41d2616cc 428 Pfam PF00465 Iron-containing alcohol dehydrogenase 18 415 1.7E-106 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 trd_1417 601822f63f71beaba34dfb936318a78e 324 SMART SM00854 5 249 3.2E-72 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA trd_1417 601822f63f71beaba34dfb936318a78e 324 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 6 249 1.1E-65 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA trd_1417 601822f63f71beaba34dfb936318a78e 324 SUPERFAMILY SSF56300 4 302 1.73E-27 T 13-10-2018 trd_A0829 0da89e225cde2bde5afc7d7ebdd99ce1 456 Gene3D G3DSA:1.20.1250.20 21 448 1.1E-67 T 13-10-2018 trd_A0829 0da89e225cde2bde5afc7d7ebdd99ce1 456 SUPERFAMILY SSF103473 21 444 1.2E-65 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0829 0da89e225cde2bde5afc7d7ebdd99ce1 456 Pfam PF07690 Major Facilitator Superfamily 34 399 6.0E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0829 0da89e225cde2bde5afc7d7ebdd99ce1 456 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_A0829 0da89e225cde2bde5afc7d7ebdd99ce1 456 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 319 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 SUPERFAMILY SSF51735 14 261 1.14E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 Gene3D G3DSA:3.40.50.720 4 261 5.9E-75 T 13-10-2018 trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 27 257 5.2E-57 T 13-10-2018 trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 2.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 2.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 2.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 2.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 2.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_A0229 8c6dc2cb2a8f15c1faff932bc63c0867 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 2.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 220 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 Pfam PF00106 short chain dehydrogenase 7 195 7.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_1906 7f35e00d38813034ab9d128d38c38460 236 Gene3D G3DSA:3.40.50.720 4 236 3.0E-56 T 13-10-2018 trd_1906 7f35e00d38813034ab9d128d38c38460 236 SUPERFAMILY SSF51735 7 235 1.99E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_1311 927aa0993c93064cba824478c6acf84f 92 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 12 91 7.5E-15 T 13-10-2018 IPR010038 MoaD, archaeal-type trd_1311 927aa0993c93064cba824478c6acf84f 92 Gene3D G3DSA:3.10.20.30 1 91 3.7E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily trd_1311 927aa0993c93064cba824478c6acf84f 92 SUPERFAMILY SSF54285 1 91 3.2E-24 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp trd_1311 927aa0993c93064cba824478c6acf84f 92 Pfam PF02597 ThiS family 5 91 4.0E-18 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 trd_1244 a5fc99fbe4ed3bce56f535899be7284c 216 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 66 9.3E-12 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 trd_1244 a5fc99fbe4ed3bce56f535899be7284c 216 Gene3D G3DSA:1.20.120.1760 1 163 3.6E-11 T 13-10-2018 trd_1244 a5fc99fbe4ed3bce56f535899be7284c 216 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 45 67 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 trd_0887 d392fb1c0069af92d4688b92c28d9e80 400 SUPERFAMILY SSF51905 1 397 1.04E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0887 d392fb1c0069af92d4688b92c28d9e80 400 Pfam PF01266 FAD dependent oxidoreductase 3 391 2.8E-64 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 trd_0282 1a57b51fa4ff28a5149cedeed57bcfca 309 SUPERFAMILY SSF103481 55 164 6.54E-11 T 13-10-2018 trd_0282 1a57b51fa4ff28a5149cedeed57bcfca 309 Pfam PF00892 EamA-like transporter family 170 303 1.9E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_0282 1a57b51fa4ff28a5149cedeed57bcfca 309 Pfam PF00892 EamA-like transporter family 21 160 7.7E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 trd_0282 1a57b51fa4ff28a5149cedeed57bcfca 309 SUPERFAMILY SSF103481 212 306 2.48E-8 T 13-10-2018 trd_A0443 c6d68c79134e7727aca0d6b97700a228 241 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 27 221 4.9E-38 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 trd_A0443 c6d68c79134e7727aca0d6b97700a228 241 Hamap MF_02088 Probable queuosine precursor transporter. 22 228 16.713 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 trd_A0443 c6d68c79134e7727aca0d6b97700a228 241 Pfam PF02592 Putative vitamin uptake transporter 59 216 1.8E-47 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 trd_1583 6bd6f2f74fd3e4fd9af0cf26ea122cc0 215 Pfam PF07638 ECF sigma factor 48 211 4.5E-5 T 13-10-2018 IPR011517 RNA polymerase sigma-70 ECF-like trd_1583 6bd6f2f74fd3e4fd9af0cf26ea122cc0 215 Gene3D G3DSA:1.10.10.10 103 214 1.0E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0713 27d42c89dbc2019554975b32beb7d955 305 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 189 206 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 trd_A0713 27d42c89dbc2019554975b32beb7d955 305 Pfam PF13580 SIS domain 46 169 3.4E-10 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 trd_A0713 27d42c89dbc2019554975b32beb7d955 305 SUPERFAMILY SSF53697 11 253 1.15E-64 T 13-10-2018 trd_A0713 27d42c89dbc2019554975b32beb7d955 305 Gene3D G3DSA:3.40.50.10490 3 222 7.3E-76 T 13-10-2018 trd_A0713 27d42c89dbc2019554975b32beb7d955 305 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 11 300 2.6E-101 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 trd_A0713 27d42c89dbc2019554975b32beb7d955 305 Gene3D G3DSA:1.10.8.1080 223 301 4.6E-27 T 13-10-2018 trd_A0713 27d42c89dbc2019554975b32beb7d955 305 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 6 299 39.01 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 trd_0155 d70631d6e73eba63282b088ab8c79252 234 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 43 54 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site trd_0155 d70631d6e73eba63282b088ab8c79252 234 Gene3D G3DSA:1.10.1060.10 6 124 2.0E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0155 d70631d6e73eba63282b088ab8c79252 234 SUPERFAMILY SSF46548 26 119 4.19E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 trd_0155 d70631d6e73eba63282b088ab8c79252 234 Pfam PF13183 4Fe-4S dicluster domain 41 101 2.9E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain trd_0463 5e7626945187405c5f65488e1eee4e0d 521 PRINTS PR00891 Rab GDI/REP protein family signature 7 25 8.9E-5 T 13-10-2018 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 Reactome: R-HSA-8876198 trd_0463 5e7626945187405c5f65488e1eee4e0d 521 PRINTS PR00891 Rab GDI/REP protein family signature 25 42 8.9E-5 T 13-10-2018 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 Reactome: R-HSA-8876198 trd_0463 5e7626945187405c5f65488e1eee4e0d 521 PRINTS PR00891 Rab GDI/REP protein family signature 231 252 8.9E-5 T 13-10-2018 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 Reactome: R-HSA-8876198 trd_0463 5e7626945187405c5f65488e1eee4e0d 521 Gene3D G3DSA:3.50.50.60 212 327 4.7E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0463 5e7626945187405c5f65488e1eee4e0d 521 Pfam PF01593 Flavin containing amine oxidoreductase 17 328 3.9E-14 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 trd_0463 5e7626945187405c5f65488e1eee4e0d 521 SUPERFAMILY SSF51905 2 397 8.72E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_0463 5e7626945187405c5f65488e1eee4e0d 521 Gene3D G3DSA:3.50.50.60 6 72 3.0E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_A0383 c559bb37480d480111b1d58a0dc96a9b 172 Gene3D G3DSA:3.40.30.10 4 99 2.7E-21 T 13-10-2018 trd_A0383 c559bb37480d480111b1d58a0dc96a9b 172 SUPERFAMILY SSF52833 5 96 1.04E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1932 ecd65a17ed0538c9c8889eb281c3bbc4 664 SUPERFAMILY SSF51445 180 648 5.38E-94 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily trd_1932 ecd65a17ed0538c9c8889eb281c3bbc4 664 Gene3D G3DSA:3.20.20.80 177 643 3.7E-90 T 13-10-2018 trd_1932 ecd65a17ed0538c9c8889eb281c3bbc4 664 Pfam PF02446 4-alpha-glucanotransferase 187 633 6.9E-78 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 trd_A0730 ccd75119a16b946eb9bfdf345e052a36 524 Pfam PF00565 Staphylococcal nuclease homologue 341 442 2.2E-20 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 trd_A0730 ccd75119a16b946eb9bfdf345e052a36 524 SUPERFAMILY SSF50199 316 445 9.68E-33 T 13-10-2018 trd_A0730 ccd75119a16b946eb9bfdf345e052a36 524 ProSitePatterns PS01123 Thermonuclease family signature 1. 326 351 - T 13-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 trd_A0730 ccd75119a16b946eb9bfdf345e052a36 524 Gene3D G3DSA:2.40.50.90 311 445 7.1E-42 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily trd_A0730 ccd75119a16b946eb9bfdf345e052a36 524 SMART SM00318 315 444 3.7E-27 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 trd_A0027 807b33150e304a89448b824dd458f48f 226 Pfam PF04347 Flagellar biosynthesis protein, FliO 105 186 3.5E-8 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 trd_0634 99ee83360fd9af80556754038360a4d6 305 SMART SM00332 13 257 9.8E-37 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0634 99ee83360fd9af80556754038360a4d6 305 Gene3D G3DSA:3.60.40.10 2 260 2.2E-76 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0634 99ee83360fd9af80556754038360a4d6 305 SMART SM00331 32 259 3.2E-31 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_0634 99ee83360fd9af80556754038360a4d6 305 Pfam PF13672 Protein phosphatase 2C 44 227 2.7E-17 T 13-10-2018 trd_0634 99ee83360fd9af80556754038360a4d6 305 SUPERFAMILY SSF81606 18 260 2.35E-67 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 trd_A0113 50da267711c6753a41e7a8d684673d0e 307 Pfam PF03787 RAMP superfamily 10 300 7.5E-24 T 13-10-2018 IPR005537 CRISPR type III-associated RAMP protein trd_A0113 50da267711c6753a41e7a8d684673d0e 307 TIGRFAM TIGR02580 cas_RAMP_Cmr4: CRISPR type III-B/RAMP module RAMP protein Cmr4 7 300 2.7E-64 T 13-10-2018 IPR013410 CRISPR-associated RAMP Cmr4 trd_0719 3cf73177fa391130c1345c44321751a3 63 Gene3D G3DSA:2.20.25.10 15 57 2.5E-19 T 13-10-2018 trd_0719 3cf73177fa391130c1345c44321751a3 63 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 8 59 21.926 T 13-10-2018 IPR038053 Uncharacterised protein family UPF0434 trd_0719 3cf73177fa391130c1345c44321751a3 63 SUPERFAMILY SSF158997 8 58 7.72E-18 T 13-10-2018 trd_0719 3cf73177fa391130c1345c44321751a3 63 Pfam PF03966 Trm112p-like protein 9 46 1.3E-8 T 13-10-2018 IPR005651 Trm112-like trd_A0849 7e26ae80ea0c5757eee8c25105680bbf 73 SUPERFAMILY SSF53927 1 55 4.14E-9 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 trd_A0849 7e26ae80ea0c5757eee8c25105680bbf 73 Gene3D G3DSA:3.40.140.10 1 70 2.2E-11 T 13-10-2018 trd_A0247 cab23ad2683197669c1968afbae2afbf 173 Pfam PF14026 Protein of unknown function (DUF4242) 96 171 4.2E-22 T 13-10-2018 IPR025336 Protein of unknown function DUF4242 trd_1315 585e0e0882e55fcc2afe06d64c02f681 387 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 84 341 1.8E-29 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1315 585e0e0882e55fcc2afe06d64c02f681 387 SUPERFAMILY SSF81442 89 378 6.93E-33 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_1315 585e0e0882e55fcc2afe06d64c02f681 387 Gene3D G3DSA:1.20.210.10 39 385 2.7E-40 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 trd_0013 35a7221255e768ebc3155305e4e81382 308 SMART SM00382 31 208 9.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_0013 35a7221255e768ebc3155305e4e81382 308 SUPERFAMILY SSF52540 5 222 7.76E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0013 35a7221255e768ebc3155305e4e81382 308 Pfam PF00005 ABC transporter 24 161 9.3E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_0013 35a7221255e768ebc3155305e4e81382 308 Gene3D G3DSA:3.40.50.300 1 233 1.3E-58 T 13-10-2018 trd_0618 62e677666925b18eadbf8bf7a4cfa07d 102 SMART SM01152 9 85 1.7E-28 T 13-10-2018 IPR003746 Protein of unknown function DUF167 trd_0618 62e677666925b18eadbf8bf7a4cfa07d 102 SUPERFAMILY SSF69786 6 95 3.4E-23 T 13-10-2018 IPR036591 YggU-like superfamily trd_0618 62e677666925b18eadbf8bf7a4cfa07d 102 Hamap MF_00634 UPF0235 protein YggU [yggU]. 9 97 19.426 T 13-10-2018 IPR003746 Protein of unknown function DUF167 trd_0618 62e677666925b18eadbf8bf7a4cfa07d 102 Gene3D G3DSA:3.30.1200.10 3 101 5.5E-24 T 13-10-2018 IPR036591 YggU-like superfamily trd_0618 62e677666925b18eadbf8bf7a4cfa07d 102 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 15 83 5.9E-22 T 13-10-2018 IPR003746 Protein of unknown function DUF167 trd_A0886 300a8316721d20151dfb81ad090ded47 71 Gene3D G3DSA:3.30.70.100 5 66 1.6E-16 T 13-10-2018 trd_A0886 300a8316721d20151dfb81ad090ded47 71 SUPERFAMILY SSF55008 1 66 1.57E-15 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 trd_A0886 300a8316721d20151dfb81ad090ded47 71 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 trd_A0886 300a8316721d20151dfb81ad090ded47 71 Pfam PF00403 Heavy-metal-associated domain 5 65 1.2E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 trd_0352 030b4b442661e5f5c51017a89007a58a 288 Pfam PF13464 Domain of unknown function (DUF4115) 222 280 4.5E-12 T 13-10-2018 IPR025194 Domain of unknown function DUF4115 trd_0352 030b4b442661e5f5c51017a89007a58a 288 Pfam PF13413 Helix-turn-helix domain 8 67 4.2E-20 T 13-10-2018 trd_0352 030b4b442661e5f5c51017a89007a58a 288 Gene3D G3DSA:1.10.260.40 1 84 7.9E-23 T 13-10-2018 trd_0723 d1705e81db5f91e1c1c446f09f10f398 574 Gene3D G3DSA:3.40.50.720 413 572 1.3E-37 T 13-10-2018 trd_0723 d1705e81db5f91e1c1c446f09f10f398 574 Pfam PF00999 Sodium/hydrogen exchanger family 11 377 5.1E-49 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 trd_0723 d1705e81db5f91e1c1c446f09f10f398 574 SUPERFAMILY SSF51735 412 554 1.38E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0723 d1705e81db5f91e1c1c446f09f10f398 574 Pfam PF02254 TrkA-N domain 416 531 1.6E-26 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 trd_0723 d1705e81db5f91e1c1c446f09f10f398 574 Gene3D G3DSA:1.20.1530.20 4 384 5.5E-65 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily trd_A0862 649355ea2a012e4833d3ec0507616cae 638 Pfam PF07676 WD40-like Beta Propeller Repeat 144 156 0.21 T 13-10-2018 IPR011659 WD40-like Beta Propeller trd_A0862 649355ea2a012e4833d3ec0507616cae 638 Gene3D G3DSA:2.120.10.30 209 457 3.1E-6 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_A0862 649355ea2a012e4833d3ec0507616cae 638 Gene3D G3DSA:2.120.10.30 21 193 1.1E-11 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like trd_A0862 649355ea2a012e4833d3ec0507616cae 638 SUPERFAMILY SSF82171 40 365 1.83E-24 T 13-10-2018 trd_A0645 4df9a1a29f8ca147dd0457e3c09e434f 138 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 8 129 2.2E-27 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 trd_A0645 4df9a1a29f8ca147dd0457e3c09e434f 138 Pfam PF00460 Flagella basal body rod protein 10 38 2.0E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 trd_A0645 4df9a1a29f8ca147dd0457e3c09e434f 138 PIRSF PIRSF002889 4 135 2.3E-27 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 trd_A0645 4df9a1a29f8ca147dd0457e3c09e434f 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 14 34 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site trd_1837 b24e48bd7f82209856b08adcacceedfc 245 Pfam PF01904 Protein of unknown function DUF72 19 235 9.2E-51 T 13-10-2018 IPR002763 Protein of unknown function DUF72 trd_1837 b24e48bd7f82209856b08adcacceedfc 245 SUPERFAMILY SSF117396 3 238 3.79E-64 T 13-10-2018 IPR036520 UPF0759 superfamily trd_1837 b24e48bd7f82209856b08adcacceedfc 245 Gene3D G3DSA:3.20.20.410 1 240 1.0E-59 T 13-10-2018 IPR036520 UPF0759 superfamily trd_1277 0eaacbfba3cc5d353796ca168d524d99 254 Gene3D G3DSA:3.40.50.150 7 248 6.0E-69 T 13-10-2018 trd_1277 0eaacbfba3cc5d353796ca168d524d99 254 Pfam PF02527 rRNA small subunit methyltransferase G 28 208 3.3E-44 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 trd_1277 0eaacbfba3cc5d353796ca168d524d99 254 SUPERFAMILY SSF53335 12 247 2.67E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_1277 0eaacbfba3cc5d353796ca168d524d99 254 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 30 210 6.0E-43 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 trd_1277 0eaacbfba3cc5d353796ca168d524d99 254 PIRSF PIRSF003078 7 229 2.2E-45 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 trd_1277 0eaacbfba3cc5d353796ca168d524d99 254 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 19 208 24.635 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 trd_A0810 c780698abff80daa224cdfef59391447 433 Gene3D G3DSA:1.20.1250.20 232 427 5.1E-27 T 13-10-2018 trd_A0810 c780698abff80daa224cdfef59391447 433 SUPERFAMILY SSF103473 30 427 1.09E-53 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0810 c780698abff80daa224cdfef59391447 433 Pfam PF07690 Major Facilitator Superfamily 54 268 3.9E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 trd_A0810 c780698abff80daa224cdfef59391447 433 PIRSF PIRSF002808 21 429 3.1E-41 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 trd_A0810 c780698abff80daa224cdfef59391447 433 Gene3D G3DSA:1.20.1250.20 31 220 6.7E-28 T 13-10-2018 trd_1841 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 2.9E-38 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1841 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 Gene3D G3DSA:1.10.3720.10 85 296 1.5E-21 T 13-10-2018 IPR035906 MetI-like superfamily trd_1841 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 SUPERFAMILY SSF161098 93 289 3.71E-18 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0004 a9a59d735df1d82cf738ed433ec31cd8 487 Pfam PF01594 AI-2E family transporter 17 346 1.2E-60 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like trd_A0083 e05c08141a566c7413ec4abd903826ab 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 290 7.9E-33 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_1761 bd60c0c244ab1095869bd671865965a2 412 SUPERFAMILY SSF89796 11 402 9.29E-141 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily trd_1761 bd60c0c244ab1095869bd671865965a2 412 Gene3D G3DSA:3.40.50.10540 12 396 2.1E-137 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily trd_1761 bd60c0c244ab1095869bd671865965a2 412 Pfam PF02515 CoA-transferase family III 13 379 6.3E-132 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 trd_1761 bd60c0c244ab1095869bd671865965a2 412 Gene3D G3DSA:3.30.1540.10 239 330 2.1E-137 T 13-10-2018 trd_A0290 df5f305f162f5f20414ebba3bfc97f0b 154 Pfam PF03631 Virulence factor BrkB 6 145 6.7E-17 T 13-10-2018 IPR017039 Virulence factor BrkB trd_0021 c4b7435c08df595e71d3df5a66020ac9 195 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 13 170 1.6E-19 T 13-10-2018 IPR013343 CRISPR-associated protein Cas4 trd_0021 c4b7435c08df595e71d3df5a66020ac9 195 Gene3D G3DSA:3.90.320.10 55 171 4.2E-5 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal trd_0021 c4b7435c08df595e71d3df5a66020ac9 195 Pfam PF01930 Domain of unknown function DUF83 6 170 1.2E-42 T 13-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 14 217 41.368 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 45 123 6.2E-29 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 186 199 - T 13-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 12 217 4.7E-83 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 PIRSF PIRSF000190 6 217 1.4E-84 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 SUPERFAMILY SSF50475 19 217 2.24E-71 T 13-10-2018 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 Gene3D G3DSA:2.30.110.10 7 217 6.9E-89 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_A0007 75e0d3f64b5d80a75db0977c75e4b942 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 176 217 1.4E-20 T 13-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0673 5a4b438f3ea0ff1eece03bc290048a9c 412 Pfam PF01882 Protein of unknown function DUF58 215 298 1.2E-15 T 13-10-2018 IPR002881 Domain of unknown function DUF58 trd_A0517 4361afc628f82284a5f2055844b55951 245 Pfam PF04474 Protein of unknown function (DUF554) 9 238 1.5E-72 T 13-10-2018 IPR007563 Protein of unknown function DUF554 trd_1406 6e0043ad8f2aa3e391a04652e0a624f6 239 Pfam PF00005 ABC transporter 18 166 8.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 trd_1406 6e0043ad8f2aa3e391a04652e0a624f6 239 SMART SM00382 26 239 8.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain trd_1406 6e0043ad8f2aa3e391a04652e0a624f6 239 Gene3D G3DSA:3.40.50.300 1 239 2.5E-58 T 13-10-2018 trd_1406 6e0043ad8f2aa3e391a04652e0a624f6 239 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 trd_1406 6e0043ad8f2aa3e391a04652e0a624f6 239 SUPERFAMILY SSF52540 2 237 2.72E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0409 dc2aa0a942048528905178c500557bf4 135 Gene3D G3DSA:3.40.50.1390 12 120 2.6E-5 T 13-10-2018 trd_A0409 dc2aa0a942048528905178c500557bf4 135 SUPERFAMILY SSF53041 29 117 2.22E-5 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 trd_1950 1f7f4d481f25698f4089233a87f502eb 279 Gene3D G3DSA:1.10.3720.10 61 277 7.1E-16 T 13-10-2018 IPR035906 MetI-like superfamily trd_1950 1f7f4d481f25698f4089233a87f502eb 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 275 1.7E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1950 1f7f4d481f25698f4089233a87f502eb 279 SUPERFAMILY SSF161098 68 256 1.44E-19 T 13-10-2018 IPR035906 MetI-like superfamily trd_1967 3da89e15f647fc4e1b0b5ed1e9080672 168 Gene3D G3DSA:2.30.30.240 75 148 4.2E-10 T 13-10-2018 trd_1967 3da89e15f647fc4e1b0b5ed1e9080672 168 SUPERFAMILY SSF50346 76 145 9.61E-13 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_1967 3da89e15f647fc4e1b0b5ed1e9080672 168 Pfam PF05239 PRC-barrel domain 77 147 5.6E-10 T 13-10-2018 IPR027275 PRC-barrel domain trd_1967 3da89e15f647fc4e1b0b5ed1e9080672 168 Pfam PF05239 PRC-barrel domain 1 61 1.2E-5 T 13-10-2018 IPR027275 PRC-barrel domain trd_1967 3da89e15f647fc4e1b0b5ed1e9080672 168 SUPERFAMILY SSF50346 1 62 3.14E-7 T 13-10-2018 IPR011033 PRC-barrel-like superfamily trd_1564 deaf6515bbf54044aabcb58f5b20db3d 157 Gene3D G3DSA:3.90.79.10 8 146 7.4E-19 T 13-10-2018 trd_1564 deaf6515bbf54044aabcb58f5b20db3d 157 SUPERFAMILY SSF55811 11 140 1.14E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 trd_1564 deaf6515bbf54044aabcb58f5b20db3d 157 Pfam PF00293 NUDIX domain 24 129 1.7E-12 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 trd_0589 c461d45c4dba0c7d186b6a87f7e93d1d 51 Gene3D G3DSA:1.10.443.10 3 51 3.1E-5 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 trd_0589 c461d45c4dba0c7d186b6a87f7e93d1d 51 SUPERFAMILY SSF56349 11 51 1.02E-5 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 trd_1496 4572332124abf054a7de9b1e64a09ebe 161 Pfam PF02308 MgtC family 11 141 7.6E-39 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 trd_1496 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 33 51 2.2E-43 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 trd_1496 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 14 33 2.2E-43 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 trd_1496 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 95 119 2.2E-43 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 trd_1496 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 68 90 2.2E-43 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 trd_A0220 26a04d47e29c67d8e23008b90a0d7c6b 658 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 325 643 4.0E-48 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 trd_A0220 26a04d47e29c67d8e23008b90a0d7c6b 658 Pfam PF07196 Flagellin hook IN motif 249 297 1.2E-7 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 trd_A0220 26a04d47e29c67d8e23008b90a0d7c6b 658 Pfam PF07196 Flagellin hook IN motif 138 188 1.3E-6 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 trd_A0220 26a04d47e29c67d8e23008b90a0d7c6b 658 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 10 106 1.4E-21 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 trd_1612 63072fba48ba9e4bec6bc3e8a30ffb1c 340 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 315 9.0E-52 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_1612 63072fba48ba9e4bec6bc3e8a30ffb1c 340 Gene3D G3DSA:3.40.50.1100 14 321 6.0E-115 T 13-10-2018 trd_1612 63072fba48ba9e4bec6bc3e8a30ffb1c 340 PIRSF PIRSF006278 1 334 8.8E-96 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase trd_1612 63072fba48ba9e4bec6bc3e8a30ffb1c 340 SUPERFAMILY SSF53686 5 326 8.23E-85 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_1612 63072fba48ba9e4bec6bc3e8a30ffb1c 340 Gene3D G3DSA:3.40.50.1100 48 152 6.0E-115 T 13-10-2018 trd_1612 63072fba48ba9e4bec6bc3e8a30ffb1c 340 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 11 327 6.4E-88 T 13-10-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 trd_0477 ee2f4984b5261e700bc378b340629fe8 320 Gene3D G3DSA:3.40.50.920 189 319 3.5E-38 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_0477 ee2f4984b5261e700bc378b340629fe8 320 Gene3D G3DSA:3.40.50.970 7 184 4.2E-61 T 13-10-2018 trd_0477 ee2f4984b5261e700bc378b340629fe8 320 SUPERFAMILY SSF52518 13 180 2.8E-53 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_0477 ee2f4984b5261e700bc378b340629fe8 320 Pfam PF02779 Transketolase, pyrimidine binding domain 14 174 1.0E-33 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_0477 ee2f4984b5261e700bc378b340629fe8 320 Pfam PF02780 Transketolase, C-terminal domain 189 309 4.7E-29 T 13-10-2018 IPR033248 Transketolase, C-terminal domain trd_0477 ee2f4984b5261e700bc378b340629fe8 320 SUPERFAMILY SSF52922 186 316 5.37E-33 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 trd_0477 ee2f4984b5261e700bc378b340629fe8 320 SMART SM00861 13 178 2.9E-51 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain trd_A0319 cc39c9431c677b4cf925e822f44b3dc6 264 SUPERFAMILY SSF53335 56 244 1.93E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase trd_A0319 cc39c9431c677b4cf925e822f44b3dc6 264 Pfam PF13649 Methyltransferase domain 55 139 1.6E-8 T 13-10-2018 trd_A0319 cc39c9431c677b4cf925e822f44b3dc6 264 Gene3D G3DSA:3.40.50.150 56 233 6.1E-22 T 13-10-2018 trd_A0319 cc39c9431c677b4cf925e822f44b3dc6 264 Gene3D G3DSA:2.20.25.570 147 204 6.1E-22 T 13-10-2018 trd_0398 2aefd3c1116e29020fbd7f6de6efb968 277 Gene3D G3DSA:3.40.1190.20 1 273 1.3E-110 T 13-10-2018 IPR029056 Ribokinase-like trd_0398 2aefd3c1116e29020fbd7f6de6efb968 277 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 8 261 7.8E-108 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 trd_0398 2aefd3c1116e29020fbd7f6de6efb968 277 SUPERFAMILY SSF53613 3 265 2.34E-87 T 13-10-2018 IPR029056 Ribokinase-like trd_0398 2aefd3c1116e29020fbd7f6de6efb968 277 Pfam PF08543 Phosphomethylpyrimidine kinase 15 259 4.0E-100 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 trd_1964 0d9e2bcbbcf6041a66d091dbcf887cca 193 Gene3D G3DSA:1.20.120.1760 10 193 4.7E-54 T 13-10-2018 trd_1964 0d9e2bcbbcf6041a66d091dbcf887cca 193 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 90 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 trd_1964 0d9e2bcbbcf6041a66d091dbcf887cca 193 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 90 5.2E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 trd_0835 66f8419fec9a50f20d4360c5101b433c 546 SUPERFAMILY SSF56601 158 542 1.82E-81 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_0835 66f8419fec9a50f20d4360c5101b433c 546 Pfam PF00905 Penicillin binding protein transpeptidase domain 217 539 1.7E-58 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 trd_0835 66f8419fec9a50f20d4360c5101b433c 546 Gene3D G3DSA:3.90.1310.10 123 447 4.2E-103 T 13-10-2018 trd_0835 66f8419fec9a50f20d4360c5101b433c 546 Gene3D G3DSA:3.40.710.10 199 538 4.2E-103 T 13-10-2018 trd_A0352 04608c3c382ee203d4d29f4dcb3d8ae8 193 SUPERFAMILY SSF52972 9 171 1.13E-32 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like trd_A0352 04608c3c382ee203d4d29f4dcb3d8ae8 193 Pfam PF01931 Protein of unknown function DUF84 13 172 3.5E-40 T 13-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 trd_A0352 04608c3c382ee203d4d29f4dcb3d8ae8 193 Gene3D G3DSA:3.90.950.10 3 177 1.1E-39 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like trd_A0514 266fe11248dbb6bddba724c6584c9d44 683 Pfam PF01968 Hydantoinase/oxoprolinase 193 472 4.0E-99 T 13-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 trd_A0514 266fe11248dbb6bddba724c6584c9d44 683 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 3 174 3.6E-53 T 13-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 trd_1812 4e9841dead9fc036fbe47a9a28ed7ce7 167 Gene3D G3DSA:3.40.30.10 5 155 2.5E-13 T 13-10-2018 trd_1812 4e9841dead9fc036fbe47a9a28ed7ce7 167 SUPERFAMILY SSF52833 4 164 1.3E-15 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1812 4e9841dead9fc036fbe47a9a28ed7ce7 167 Pfam PF00578 AhpC/TSA family 8 128 2.4E-9 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 trd_A0141 797af843b8d7b61322f17b56050fc46e 251 Gene3D G3DSA:3.40.30.10 57 251 1.0E-56 T 13-10-2018 trd_A0141 797af843b8d7b61322f17b56050fc46e 251 SUPERFAMILY SSF52833 80 247 1.07E-41 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_A0141 797af843b8d7b61322f17b56050fc46e 251 Pfam PF13462 Thioredoxin 83 246 4.4E-37 T 13-10-2018 IPR012336 Thioredoxin-like fold trd_1824 fb37aef046bd4a4b51273dbd1d3e6a07 665 Gene3D G3DSA:1.50.10.10 270 653 3.2E-100 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 trd_1824 fb37aef046bd4a4b51273dbd1d3e6a07 665 SUPERFAMILY SSF48208 237 649 2.04E-106 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 trd_1824 fb37aef046bd4a4b51273dbd1d3e6a07 665 Pfam PF00723 Glycosyl hydrolases family 15 376 584 9.2E-13 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 trd_1824 fb37aef046bd4a4b51273dbd1d3e6a07 665 SUPERFAMILY SSF74650 63 191 7.85E-5 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 trd_1684 ed3f159e29b6b0b28e3aa16e140a9bad 285 SUPERFAMILY SSF56784 11 270 6.11E-46 T 13-10-2018 IPR036412 HAD-like superfamily trd_1684 ed3f159e29b6b0b28e3aa16e140a9bad 285 Gene3D G3DSA:3.40.50.1000 98 198 3.4E-56 T 13-10-2018 IPR023214 HAD superfamily trd_1684 ed3f159e29b6b0b28e3aa16e140a9bad 285 Pfam PF13242 HAD-hyrolase-like 198 268 4.0E-9 T 13-10-2018 trd_1684 ed3f159e29b6b0b28e3aa16e140a9bad 285 Pfam PF13344 Haloacid dehalogenase-like hydrolase 14 120 1.5E-24 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA trd_1684 ed3f159e29b6b0b28e3aa16e140a9bad 285 Gene3D G3DSA:3.40.50.1000 13 248 3.4E-56 T 13-10-2018 IPR023214 HAD superfamily trd_1853 fa6188504eedc178f3e8e660cc67a752 378 Pfam PF06032 Protein of unknown function (DUF917) 8 356 1.3E-131 T 13-10-2018 IPR010318 Protein of unknown function DUF917 trd_1853 fa6188504eedc178f3e8e660cc67a752 378 SUPERFAMILY SSF160991 1 355 9.55E-123 T 13-10-2018 trd_1853 fa6188504eedc178f3e8e660cc67a752 378 Gene3D G3DSA:3.40.1610.10 1 220 1.0E-62 T 13-10-2018 IPR027479 Protein of unknown function DUF917, N-terminal trd_1853 fa6188504eedc178f3e8e660cc67a752 378 Gene3D G3DSA:2.40.390.10 221 342 2.1E-7 T 13-10-2018 IPR024071 Protein of unknown function DUF917, C-terminal trd_1456 d99f6d0401e558e04309231526ce7625 354 Pfam PF05384 Sensor protein DegS 14 123 3.4E-11 T 13-10-2018 IPR008595 Sensor DegS GO:0007165|GO:0016301 trd_1379 552747233088816a8d97542b8f686810 125 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 117 1.6E-25 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 trd_1379 552747233088816a8d97542b8f686810 125 TIGRFAM TIGR00494 crcB: protein CrcB 9 120 5.1E-28 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 trd_1379 552747233088816a8d97542b8f686810 125 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 122 18.868 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 trd_1981 e4f0d9bd66b19ce42eace71aaeea71db 275 SUPERFAMILY SSF58104 12 113 3.79E-5 T 13-10-2018 trd_0913 27ad83252bcb94be1901115b2f6949c7 420 Pfam PF13535 ATP-grasp domain 145 295 7.9E-32 T 13-10-2018 trd_0913 27ad83252bcb94be1901115b2f6949c7 420 SMART SM01209 109 286 0.0014 T 13-10-2018 trd_0913 27ad83252bcb94be1901115b2f6949c7 420 Gene3D G3DSA:3.30.470.20 103 414 9.4E-78 T 13-10-2018 trd_0913 27ad83252bcb94be1901115b2f6949c7 420 SUPERFAMILY SSF56059 92 342 4.24E-36 T 13-10-2018 trd_1249 847ca90e7888ba8fd8346f873708e78b 105 Pfam PF01250 Ribosomal protein S6 11 102 1.7E-26 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1249 847ca90e7888ba8fd8346f873708e78b 105 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 8 105 20.118 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 trd_1249 847ca90e7888ba8fd8346f873708e78b 105 SUPERFAMILY SSF54995 9 105 1.7E-29 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1249 847ca90e7888ba8fd8346f873708e78b 105 TIGRFAM TIGR00166 S6: ribosomal protein bS6 10 104 1.1E-23 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1249 847ca90e7888ba8fd8346f873708e78b 105 Gene3D G3DSA:3.30.70.60 4 105 6.6E-32 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 Gene3D G3DSA:3.50.50.100 8 408 8.8E-126 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 1.2E-13 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 1.2E-13 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 1.2E-13 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 1.2E-13 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 338 1.8E-53 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 SUPERFAMILY SSF51905 4 347 3.71E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 5.3E-6 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 5.3E-6 T 13-10-2018 trd_1911 1c17fe56a243f9f43f6c454649b6e5b9 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 5.3E-6 T 13-10-2018 trd_0339 063842c9cbce0c1f64ea2573218edb84 252 Pfam PF00561 alpha/beta hydrolase fold 20 128 1.5E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 trd_0339 063842c9cbce0c1f64ea2573218edb84 252 Gene3D G3DSA:3.40.50.1820 2 248 2.3E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_0339 063842c9cbce0c1f64ea2573218edb84 252 SUPERFAMILY SSF53474 1 244 1.71E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold trd_A0669 b5ce61ebdea82975fbdf260f41af66bb 301 SUPERFAMILY SSF51556 17 289 3.55E-67 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0669 b5ce61ebdea82975fbdf260f41af66bb 301 ProSitePatterns PS00482 Dihydroorotase signature 1. 19 27 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 trd_A0669 b5ce61ebdea82975fbdf260f41af66bb 301 Gene3D G3DSA:3.20.20.140 14 295 1.4E-70 T 13-10-2018 trd_A0669 b5ce61ebdea82975fbdf260f41af66bb 301 Pfam PF04909 Amidohydrolase 18 289 6.4E-57 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_A0197 88bf98813c97dba2934c64108ae304e5 251 Gene3D G3DSA:3.40.470.10 7 243 3.6E-67 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_A0197 88bf98813c97dba2934c64108ae304e5 251 SMART SM00986 50 235 4.9E-32 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_A0197 88bf98813c97dba2934c64108ae304e5 251 Pfam PF03167 Uracil DNA glycosylase superfamily 50 236 1.7E-32 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_A0197 88bf98813c97dba2934c64108ae304e5 251 SUPERFAMILY SSF52141 18 243 3.6E-46 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_A0197 88bf98813c97dba2934c64108ae304e5 251 SMART SM00987 50 235 4.9E-32 T 13-10-2018 trd_1239 556268291608154c9955b6b649aa9fe2 210 Pfam PF02698 DUF218 domain 54 179 2.7E-26 T 13-10-2018 IPR003848 Domain of unknown function DUF218 trd_1154 d343ee137c54044471b24d6ff84514a3 158 Pfam PF14353 CpXC protein 24 94 2.1E-10 T 13-10-2018 IPR025682 CpXC domain trd_1915 6279cf93d14c158ecf5958be4f304b07 185 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 46 76 1.4E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_1915 6279cf93d14c158ecf5958be4f304b07 185 Gene3D G3DSA:3.10.180.10 43 180 3.5E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1915 6279cf93d14c158ecf5958be4f304b07 185 ProSitePatterns PS00934 Glyoxalase I signature 1. 48 69 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 trd_1915 6279cf93d14c158ecf5958be4f304b07 185 SUPERFAMILY SSF54593 46 178 1.75E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1532 560cb8132e97def3175849ef6a9fe0ff 89 Pfam PF09851 Short C-terminal domain 60 85 7.0E-8 T 13-10-2018 IPR018649 SHOCT domain trd_0473 00bf4a367578e16d5407671608f9db8e 646 SUPERFAMILY SSF46785 29 115 1.58E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0504 b0dcef29322129d8a8d98400e7c0972f 302 SUPERFAMILY SSF52540 69 264 4.79E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0504 b0dcef29322129d8a8d98400e7c0972f 302 Gene3D G3DSA:3.40.50.300 31 92 6.5E-11 T 13-10-2018 trd_A0504 b0dcef29322129d8a8d98400e7c0972f 302 Gene3D G3DSA:3.40.50.300 127 284 2.2E-8 T 13-10-2018 trd_1281 f6cccaa1d423ddc15a2309fdea709184 578 SUPERFAMILY SSF53850 78 575 1.99E-109 T 13-10-2018 trd_1281 f6cccaa1d423ddc15a2309fdea709184 578 Gene3D G3DSA:3.90.76.10 105 249 1.5E-102 T 13-10-2018 trd_1281 f6cccaa1d423ddc15a2309fdea709184 578 Gene3D G3DSA:3.40.190.10 250 562 1.5E-102 T 13-10-2018 trd_1281 f6cccaa1d423ddc15a2309fdea709184 578 PIRSF PIRSF002741 32 577 5.9E-79 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 trd_1281 f6cccaa1d423ddc15a2309fdea709184 578 Gene3D G3DSA:3.10.105.10 331 549 1.5E-102 T 13-10-2018 trd_1281 f6cccaa1d423ddc15a2309fdea709184 578 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 123 490 1.3E-80 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_0286 4fc26de35b3c486d51ddab6761c46b3e 271 ProDom PD065237 RESTRICTION MA4585 ORF11 MM1264 PRECURSOR HGICIIM SYSTEM 5'REGION SIGNAL SIMILAR 176 262 3.0E-12 T 13-10-2018 IPR020391 Uncharacterised protein family 10.2kDa trd_0206 738177b859010b0705449cf00f52982d 230 SMART SM00986 53 198 3.7E-40 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_0206 738177b859010b0705449cf00f52982d 230 SMART SM00987 53 198 3.7E-40 T 13-10-2018 trd_0206 738177b859010b0705449cf00f52982d 230 SUPERFAMILY SSF52141 28 204 7.19E-65 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_0206 738177b859010b0705449cf00f52982d 230 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 39 204 5.3E-65 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 trd_0206 738177b859010b0705449cf00f52982d 230 Gene3D G3DSA:3.40.470.10 28 224 6.9E-73 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_0206 738177b859010b0705449cf00f52982d 230 Pfam PF03167 Uracil DNA glycosylase superfamily 53 191 2.3E-46 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 trd_1205 c4ca45a9754b4832116836b2c5b63eb2 148 SUPERFAMILY SSF55961 2 144 1.9E-39 T 13-10-2018 trd_1205 c4ca45a9754b4832116836b2c5b63eb2 148 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 144 4.0E-33 T 13-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G trd_1205 c4ca45a9754b4832116836b2c5b63eb2 148 Gene3D G3DSA:3.30.530.20 1 148 3.2E-45 T 13-10-2018 IPR023393 START-like domain superfamily trd_1133 35c66703fe5ad1ced4a0d5398178db0c 164 Gene3D G3DSA:3.30.240.20 85 156 1.1E-15 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily trd_1133 35c66703fe5ad1ced4a0d5398178db0c 164 Pfam PF04239 Protein of unknown function (DUF421) 93 156 5.8E-9 T 13-10-2018 IPR007353 Protein of unknown function DUF421 trd_1344 f6fb9cf572c1e6fbcdfdff7c9e1838f0 302 Pfam PF09335 SNARE associated Golgi protein 115 240 3.7E-18 T 13-10-2018 IPR032816 SNARE associated Golgi protein trd_0268 ff3ec66c7e0938a35ec95840d3f2214e 252 Gene3D G3DSA:3.40.50.720 1 251 1.3E-57 T 13-10-2018 trd_0268 ff3ec66c7e0938a35ec95840d3f2214e 252 SUPERFAMILY SSF51735 1 248 3.16E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily trd_0268 ff3ec66c7e0938a35ec95840d3f2214e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 4.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0268 ff3ec66c7e0938a35ec95840d3f2214e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0268 ff3ec66c7e0938a35ec95840d3f2214e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR trd_0268 ff3ec66c7e0938a35ec95840d3f2214e 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 4 247 3.1E-46 T 13-10-2018 trd_A0905 658097c61303c3951dd699e2b702d1d2 170 Pfam PF02577 Bifunctional nuclease 9 134 2.5E-13 T 13-10-2018 IPR003729 Bifunctional nuclease domain GO:0004518 trd_A0905 658097c61303c3951dd699e2b702d1d2 170 SUPERFAMILY SSF103256 5 129 9.94E-6 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 Gene3D G3DSA:3.40.190.10 182 396 4.8E-115 T 13-10-2018 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PIRSF PIRSF019574 41 401 3.7E-113 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 299 318 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 99 120 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 255 274 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 140 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 83 99 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 142 155 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 346 372 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 173 189 9.8E-46 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 Gene3D G3DSA:3.40.190.10 80 370 4.8E-115 T 13-10-2018 trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 Pfam PF13416 Bacterial extracellular solute-binding protein 93 358 4.2E-35 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_0520 e0a4f99e319c41b0c24e1d0b726ba982 401 SUPERFAMILY SSF53850 77 401 9.83E-88 T 13-10-2018 trd_A0549 959b43fb2aca141434a1b80c3f7b979a 137 Gene3D G3DSA:2.30.110.10 1 133 1.2E-31 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 trd_A0549 959b43fb2aca141434a1b80c3f7b979a 137 SUPERFAMILY SSF50475 5 133 2.06E-28 T 13-10-2018 trd_A0549 959b43fb2aca141434a1b80c3f7b979a 137 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 6 88 2.1E-16 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 trd_A0549 959b43fb2aca141434a1b80c3f7b979a 137 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 8 130 2.4E-30 T 13-10-2018 IPR019920 F420-binding domain, putative trd_A0191 489cc692d2c2bd2e87a6ddfa0a07e281 275 Pfam PF12679 ABC-2 family transporter protein 8 271 1.1E-19 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 trd_1033 c353e4dbd3a64662a89c9c6c453afdb0 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 2 152 16.229 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 trd_1033 c353e4dbd3a64662a89c9c6c453afdb0 169 TIGRFAM TIGR00077 lspA: signal peptidase II 9 146 6.9E-35 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 trd_1033 c353e4dbd3a64662a89c9c6c453afdb0 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 127 143 2.8E-17 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 trd_1033 c353e4dbd3a64662a89c9c6c453afdb0 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 95 110 2.8E-17 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 trd_1033 c353e4dbd3a64662a89c9c6c453afdb0 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 52 60 2.8E-17 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 trd_1033 c353e4dbd3a64662a89c9c6c453afdb0 169 Pfam PF01252 Signal peptidase (SPase) II 11 146 8.0E-36 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 trd_0053 9e731d6b3db42252d07adbace4998bdb 88 Gene3D G3DSA:1.25.40.10 7 88 4.1E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 trd_1923 c9fea306fe76e3334d96735aac22ad9c 140 SUPERFAMILY SSF54593 3 133 3.52E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_1923 c9fea306fe76e3334d96735aac22ad9c 140 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 116 6.0E-20 T 13-10-2018 trd_1923 c9fea306fe76e3334d96735aac22ad9c 140 Gene3D G3DSA:3.10.180.10 3 131 4.6E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0019 899c1b3997280b27fd7196f35ab0c0c8 133 Pfam PF05168 HEPN domain 5 124 1.4E-27 T 13-10-2018 IPR007842 HEPN domain trd_A0019 899c1b3997280b27fd7196f35ab0c0c8 133 SMART SM00748 8 119 1.1E-24 T 13-10-2018 IPR007842 HEPN domain trd_A0019 899c1b3997280b27fd7196f35ab0c0c8 133 SUPERFAMILY SSF81593 2 125 3.77E-36 T 13-10-2018 trd_A0019 899c1b3997280b27fd7196f35ab0c0c8 133 Gene3D G3DSA:1.20.120.330 1 129 1.1E-33 T 13-10-2018 trd_0995 6f7a85254af79f05bd2eb83da3e099f8 186 Pfam PF04519 Polymer-forming cytoskeletal 72 168 1.2E-24 T 13-10-2018 IPR007607 Bactofilin A/B trd_0515 bc0fc3d93acee6f514c19606d78a5b21 116 SMART SM00530 12 67 1.9E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 trd_0515 bc0fc3d93acee6f514c19606d78a5b21 116 Gene3D G3DSA:1.10.260.40 5 90 8.9E-17 T 13-10-2018 trd_0515 bc0fc3d93acee6f514c19606d78a5b21 116 Pfam PF13560 Helix-turn-helix domain 9 62 1.7E-12 T 13-10-2018 trd_0515 bc0fc3d93acee6f514c19606d78a5b21 116 SUPERFAMILY SSF47413 6 70 1.58E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 PRINTS PR01438 Universal stress protein signature 122 144 7.5E-15 T 13-10-2018 IPR006015 Universal stress protein A trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 PRINTS PR01438 Universal stress protein signature 104 116 7.5E-15 T 13-10-2018 IPR006015 Universal stress protein A trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 PRINTS PR01438 Universal stress protein signature 2 20 7.5E-15 T 13-10-2018 IPR006015 Universal stress protein A trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 SUPERFAMILY SSF52402 154 297 3.1E-30 T 13-10-2018 trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 SUPERFAMILY SSF52402 1 144 1.67E-32 T 13-10-2018 trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 Pfam PF00582 Universal stress protein family 154 296 9.1E-26 T 13-10-2018 IPR006016 UspA trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 Pfam PF00582 Universal stress protein family 1 144 9.6E-28 T 13-10-2018 IPR006016 UspA trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 Gene3D G3DSA:3.40.50.620 1 145 4.3E-31 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_A0545 9322c9f90c4ad7d5ce1927db4977cb0c 307 Gene3D G3DSA:3.40.50.620 151 297 1.5E-34 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_0789 7a7169f5fe60ff473303d49f2cb32ab0 181 SUPERFAMILY SSF103256 2 138 3.01E-44 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 trd_0789 7a7169f5fe60ff473303d49f2cb32ab0 181 Pfam PF02577 Bifunctional nuclease 6 131 5.9E-44 T 13-10-2018 IPR003729 Bifunctional nuclease domain GO:0004518 trd_0789 7a7169f5fe60ff473303d49f2cb32ab0 181 Gene3D G3DSA:3.10.690.10 1 142 3.2E-50 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 trd_1398 e9eb1877ab7edd9ec401021b8f6c7dda 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 269 1.1E-37 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_0221 fb5d661aa69998b96f614dc11271f9ed 783 Pfam PF02687 FtsX-like permease family 683 775 5.0E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 trd_0221 fb5d661aa69998b96f614dc11271f9ed 783 Pfam PF02687 FtsX-like permease family 285 377 1.4E-7 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 trd_0221 fb5d661aa69998b96f614dc11271f9ed 783 Pfam PF12704 MacB-like periplasmic core domain 426 626 6.8E-10 T 13-10-2018 IPR025857 MacB-like periplasmic core domain trd_0135 3239033302da81bb883a46a5bf4a2c1e 510 Pfam PF01547 Bacterial extracellular solute-binding protein 83 392 5.1E-23 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_0135 3239033302da81bb883a46a5bf4a2c1e 510 Gene3D G3DSA:3.40.190.10 179 476 4.8E-54 T 13-10-2018 trd_0135 3239033302da81bb883a46a5bf4a2c1e 510 SUPERFAMILY SSF53850 23 483 1.69E-52 T 13-10-2018 trd_0135 3239033302da81bb883a46a5bf4a2c1e 510 Gene3D G3DSA:3.40.190.10 85 433 4.8E-54 T 13-10-2018 trd_0474 2774e1c77771fc733406cc7daf92a4bc 393 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 70 359 3.5E-22 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0436 2878e7a8343b1ec941441bad93457f96 364 Gene3D G3DSA:3.40.710.10 15 299 1.0E-69 T 13-10-2018 trd_0436 2878e7a8343b1ec941441bad93457f96 364 SUPERFAMILY SSF56601 25 289 8.45E-48 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like trd_0436 2878e7a8343b1ec941441bad93457f96 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 69 80 2.4E-8 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_0436 2878e7a8343b1ec941441bad93457f96 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 2.4E-8 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 trd_0436 2878e7a8343b1ec941441bad93457f96 364 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 37 270 5.8E-37 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 trd_0396 d076854c4588a5d28a395acf54470629 329 SUPERFAMILY SSF161098 106 308 4.19E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_0396 d076854c4588a5d28a395acf54470629 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 326 2.3E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0396 d076854c4588a5d28a395acf54470629 329 Gene3D G3DSA:1.10.3720.10 99 327 2.6E-24 T 13-10-2018 IPR035906 MetI-like superfamily trd_0396 d076854c4588a5d28a395acf54470629 329 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 67 1.1E-14 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain trd_0175 e62370bc9355664829b57fc0eb8c1350 242 Gene3D G3DSA:3.30.420.40 99 188 3.3E-41 T 13-10-2018 trd_0175 e62370bc9355664829b57fc0eb8c1350 242 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 8 218 8.8E-43 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 trd_0175 e62370bc9355664829b57fc0eb8c1350 242 Pfam PF00814 Glycoprotease family 35 136 2.1E-25 T 13-10-2018 IPR000905 Gcp-like domain trd_0175 e62370bc9355664829b57fc0eb8c1350 242 Gene3D G3DSA:3.30.420.40 8 218 3.3E-41 T 13-10-2018 trd_0175 e62370bc9355664829b57fc0eb8c1350 242 SUPERFAMILY SSF53067 8 106 7.48E-26 T 13-10-2018 trd_0316 0028b3f65e1f954d9df3fd261a272465 274 Pfam PF02535 ZIP Zinc transporter 120 269 2.8E-17 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 trd_A0568 673b1c8e8b9854a06bbbd7fa998fc8c4 204 SUPERFAMILY SSF53448 7 197 9.66E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_A0568 673b1c8e8b9854a06bbbd7fa998fc8c4 204 Pfam PF12804 MobA-like NTP transferase domain 9 173 3.2E-37 T 13-10-2018 IPR025877 MobA-like NTP transferase trd_A0568 673b1c8e8b9854a06bbbd7fa998fc8c4 204 Gene3D G3DSA:3.90.550.10 3 201 1.7E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases trd_0249 65bd5ab73c391a07f68ba7327753a01d 341 SUPERFAMILY SSF161098 12 134 2.13E-10 T 13-10-2018 IPR035906 MetI-like superfamily trd_0249 65bd5ab73c391a07f68ba7327753a01d 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 177 334 7.4E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0249 65bd5ab73c391a07f68ba7327753a01d 341 SUPERFAMILY SSF161098 142 341 1.14E-45 T 13-10-2018 IPR035906 MetI-like superfamily trd_0313 f6c9fdc577439161c27b8a293bcb31fb 371 Pfam PF13367 Protease prsW family 52 248 6.7E-47 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 trd_1632 e8c54d0cce626a6d316741b34a864447 239 Pfam PF02616 Segregation and condensation protein ScpA 31 128 3.3E-12 T 13-10-2018 IPR003768 Segregation and condensation protein A trd_1632 e8c54d0cce626a6d316741b34a864447 239 Pfam PF02616 Segregation and condensation protein ScpA 175 231 1.3E-6 T 13-10-2018 IPR003768 Segregation and condensation protein A trd_A0805 d9dafa6f58635ddab5b5192cf6b3364e 271 Gene3D G3DSA:2.40.50.90 61 207 4.8E-40 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily trd_A0805 d9dafa6f58635ddab5b5192cf6b3364e 271 SMART SM00318 67 203 3.0E-23 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 trd_A0805 d9dafa6f58635ddab5b5192cf6b3364e 271 Pfam PF00565 Staphylococcal nuclease homologue 93 202 7.7E-22 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 trd_A0805 d9dafa6f58635ddab5b5192cf6b3364e 271 SUPERFAMILY SSF50199 70 203 3.27E-32 T 13-10-2018 trd_A0805 d9dafa6f58635ddab5b5192cf6b3364e 271 ProSitePatterns PS01123 Thermonuclease family signature 1. 78 102 - T 13-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 trd_A0116 1f824a3528aca6d7e156f03c7ff18763 384 TIGRFAM TIGR01894 cas_TM1795_cmr1: CRISPR type III-B/RAMP module RAMP protein Cmr1 14 179 9.6E-13 T 13-10-2018 IPR007522 CRISPR-associated protein TM1795 trd_A0116 1f824a3528aca6d7e156f03c7ff18763 384 Pfam PF03787 RAMP superfamily 14 92 3.0E-12 T 13-10-2018 IPR005537 CRISPR type III-associated RAMP protein trd_A0148 12212dc9266f5e78e95866f25feaba57 256 Pfam PF09821 C-terminal AAA-associated domain 43 103 3.8E-5 T 13-10-2018 IPR018632 C-terminal AAA-associated domain trd_A0589 a358b43bc93447c07130cab81697995e 144 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 142 1.2E-21 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_1700 6dd0752068725b321509c1e598b407a7 405 Pfam PF02601 Exonuclease VII, large subunit 334 395 7.2E-9 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 trd_1700 6dd0752068725b321509c1e598b407a7 405 Pfam PF02601 Exonuclease VII, large subunit 125 342 1.5E-78 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 trd_1700 6dd0752068725b321509c1e598b407a7 405 Pfam PF13742 OB-fold nucleic acid binding domain 9 102 4.0E-22 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 trd_1700 6dd0752068725b321509c1e598b407a7 405 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 4 399 27.148 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 trd_1700 6dd0752068725b321509c1e598b407a7 405 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 9 398 5.2E-138 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 trd_0826 1eb70dce7ee3ebd565f8403b0cf8368f 779 Pfam PF10060 Uncharacterized membrane protein (DUF2298) 46 561 5.1E-115 T 13-10-2018 IPR018746 Protein of unknown function DUF2298 trd_0826 1eb70dce7ee3ebd565f8403b0cf8368f 779 TIGRFAM TIGR03662 Chlor_Arch_YYY: chlor_Arch_YYY domain 7 773 8.6E-116 T 13-10-2018 IPR018746 Protein of unknown function DUF2298 trd_0837 816d37badefa7d051101d654bd3b6be8 289 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 5 244 1.7E-96 T 13-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 trd_0837 816d37badefa7d051101d654bd3b6be8 289 Gene3D G3DSA:3.40.50.1580 1 284 7.8E-99 T 13-10-2018 trd_0837 816d37badefa7d051101d654bd3b6be8 289 SUPERFAMILY SSF53167 3 265 4.31E-89 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 trd_0837 816d37badefa7d051101d654bd3b6be8 289 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 3 265 43.647 T 13-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 trd_0837 816d37badefa7d051101d654bd3b6be8 289 Pfam PF01048 Phosphorylase superfamily 5 244 1.4E-47 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 trd_1218 0f11e8629caffe8a8249c84d1e28e3d5 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 57 74 9.3E-7 T 13-10-2018 trd_1218 0f11e8629caffe8a8249c84d1e28e3d5 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 159 178 9.3E-7 T 13-10-2018 trd_1218 0f11e8629caffe8a8249c84d1e28e3d5 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 80 103 9.3E-7 T 13-10-2018 trd_1218 0f11e8629caffe8a8249c84d1e28e3d5 222 Pfam PF03379 CcmB protein 8 216 1.6E-27 T 13-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1218 0f11e8629caffe8a8249c84d1e28e3d5 222 PIRSF PIRSF002764 1 220 8.0E-37 T 13-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria trd_A0581 a543be787feb439af33544ff8cc5bb6a 213 SMART SM01207 8 177 3.3E-27 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 trd_A0581 a543be787feb439af33544ff8cc5bb6a 213 Pfam PF02660 Glycerol-3-phosphate acyltransferase 10 183 1.6E-25 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 trd_A0581 a543be787feb439af33544ff8cc5bb6a 213 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 5 192 12.322 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 trd_0614 aa1b9ae40c41550cb2fa0737f4fa29e4 344 Gene3D G3DSA:3.40.980.10 143 306 1.2E-10 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_0614 aa1b9ae40c41550cb2fa0737f4fa29e4 344 SUPERFAMILY SSF53218 186 304 8.9E-12 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily trd_1536 c06e07131e3206b269f3dea17d2229fa 342 SUPERFAMILY SSF110296 3 337 5.23E-40 T 13-10-2018 trd_1536 c06e07131e3206b269f3dea17d2229fa 342 Gene3D G3DSA:2.130.10.10 78 341 7.7E-45 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_0486 c64570d1185da7b2c5bfaf05e591c5e8 131 Gene3D G3DSA:1.20.1290.10 9 131 4.1E-31 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 trd_0486 c64570d1185da7b2c5bfaf05e591c5e8 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 118 1.7E-13 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 trd_0486 c64570d1185da7b2c5bfaf05e591c5e8 131 SUPERFAMILY SSF69118 18 121 6.15E-22 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 trd_0486 c64570d1185da7b2c5bfaf05e591c5e8 131 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 53 101 1.1E-8 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 trd_0876 afb27abd745e75a0bbda1c6ecad850bb 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 287 1.2E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_0876 afb27abd745e75a0bbda1c6ecad850bb 300 Gene3D G3DSA:1.10.3720.10 26 297 1.3E-61 T 13-10-2018 IPR035906 MetI-like superfamily trd_0876 afb27abd745e75a0bbda1c6ecad850bb 300 SUPERFAMILY SSF161098 29 289 6.15E-56 T 13-10-2018 IPR035906 MetI-like superfamily trd_1643 66ab798811ba20ea8e32e5625f9af5b4 460 Gene3D G3DSA:2.60.40.10 218 305 4.6E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_1332 d3103d64661a1dd35b9581780b4c5171 281 Pfam PF01925 Sulfite exporter TauE/SafE 11 273 9.8E-45 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 trd_0510 cc6908d957a12f1dac6032c3b1605da5 307 Gene3D G3DSA:2.60.120.580 4 115 7.9E-18 T 13-10-2018 trd_0510 cc6908d957a12f1dac6032c3b1605da5 307 Gene3D G3DSA:2.60.120.580 116 214 7.8E-26 T 13-10-2018 trd_0510 cc6908d957a12f1dac6032c3b1605da5 307 Pfam PF03069 Acetamidase/Formamidase family 26 141 4.2E-6 T 13-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 trd_0510 cc6908d957a12f1dac6032c3b1605da5 307 Pfam PF03069 Acetamidase/Formamidase family 154 266 6.6E-11 T 13-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 trd_0510 cc6908d957a12f1dac6032c3b1605da5 307 SUPERFAMILY SSF141130 11 287 2.09E-56 T 13-10-2018 trd_1466 fea612db04842635ec1bdf9ee135ec60 214 Pfam PF07040 Protein of unknown function (DUF1326) 26 159 7.1E-33 T 13-10-2018 IPR009758 Protein of unknown function DUF1326 trd_1625 c34075947cb33ace662229b113ad72fc 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 169 9.3E-17 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD trd_0146 77d3f0797f9ef6140b4f858e2ff37e21 157 Gene3D G3DSA:1.10.10.10 49 140 4.3E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_0146 77d3f0797f9ef6140b4f858e2ff37e21 157 SUPERFAMILY SSF46785 58 150 4.14E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0733 5f090b7b7b4fef1a698501ceee66eb05 83 Gene3D G3DSA:3.90.25.10 1 81 4.1E-12 T 13-10-2018 trd_A0372 df1e3f34256a829618f758845b45a0c4 505 Pfam PF00361 Proton-conducting membrane transporter 128 417 1.4E-58 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0372 df1e3f34256a829618f758845b45a0c4 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 321 340 1.3E-12 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0372 df1e3f34256a829618f758845b45a0c4 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 1.3E-12 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0372 df1e3f34256a829618f758845b45a0c4 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 1.3E-12 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0372 df1e3f34256a829618f758845b45a0c4 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 373 399 1.3E-12 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0372 df1e3f34256a829618f758845b45a0c4 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 233 257 1.3E-12 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 trd_A0588 db98b12f012b2002f49e8766d960ca64 181 Pfam PF02653 Branched-chain amino acid transport system / permease component 15 163 5.9E-32 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_1359 234be0e69c0a5dd4419bd09e3d7e8318 129 Pfam PF07681 DoxX 5 85 1.8E-10 T 13-10-2018 IPR032808 DoxX family trd_1144 8dd1b28932f76aaee51faa3748f35e1a 384 Pfam PF10128 Glucose-6-phosphate dehydrogenase subunit 65 368 1.2E-56 T 13-10-2018 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA trd_1270 03ddb0d80f1ad4c2d59aefd2fb3a4a6b 285 Pfam PF03618 Kinase/pyrophosphorylase 11 266 3.5E-88 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 trd_1270 03ddb0d80f1ad4c2d59aefd2fb3a4a6b 285 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 9 272 51.056 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein trd_1246 25f34bc4e4ac30096c42f2e28e7d28de 464 SUPERFAMILY SSF109998 66 163 5.1E-6 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily trd_1246 25f34bc4e4ac30096c42f2e28e7d28de 464 Pfam PF00639 PPIC-type PPIASE domain 301 377 1.5E-22 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 trd_1246 25f34bc4e4ac30096c42f2e28e7d28de 464 Gene3D G3DSA:3.10.50.40 287 409 1.8E-33 T 13-10-2018 trd_1246 25f34bc4e4ac30096c42f2e28e7d28de 464 SUPERFAMILY SSF54534 289 379 4.84E-30 T 13-10-2018 trd_A0542 63d1d86c672a30293ec71b41f6ff1f33 204 Gene3D G3DSA:3.40.50.850 7 200 1.1E-58 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 trd_A0542 63d1d86c672a30293ec71b41f6ff1f33 204 Pfam PF00857 Isochorismatase family 23 193 1.5E-42 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 trd_A0542 63d1d86c672a30293ec71b41f6ff1f33 204 SUPERFAMILY SSF52499 16 194 3.14E-63 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 trd_0952 8de689f44a383bef423757e3b1b2ccfa 285 SUPERFAMILY SSF51658 6 241 1.93E-34 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily trd_0952 8de689f44a383bef423757e3b1b2ccfa 285 Pfam PF01261 Xylose isomerase-like TIM barrel 19 215 3.7E-16 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain trd_0952 8de689f44a383bef423757e3b1b2ccfa 285 Gene3D G3DSA:3.20.20.150 1 247 2.2E-34 T 13-10-2018 trd_0483 3cc60db0968e8d7d3e0b3b73c9aa3d7a 117 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 9 92 1.6E-28 T 13-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 trd_1960 14c012f060226835f5b0a6aa57dc19a1 371 Gene3D G3DSA:2.40.440.10 251 371 1.4E-37 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like trd_1960 14c012f060226835f5b0a6aa57dc19a1 371 Pfam PF03734 L,D-transpeptidase catalytic domain 252 369 2.1E-22 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 trd_1960 14c012f060226835f5b0a6aa57dc19a1 371 SUPERFAMILY SSF141523 250 369 5.36E-34 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like trd_A0832 515d2c4d400296d7c05b8218fc3e6680 64 Pfam PF09723 Zinc ribbon domain 2 41 2.1E-14 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_A0832 515d2c4d400296d7c05b8218fc3e6680 64 SMART SM00834 2 43 6.4E-15 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_A0832 515d2c4d400296d7c05b8218fc3e6680 64 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 2 49 4.9E-19 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain trd_A0832 515d2c4d400296d7c05b8218fc3e6680 64 Gene3D G3DSA:2.20.28.10 4 39 2.9E-5 T 13-10-2018 trd_A0832 515d2c4d400296d7c05b8218fc3e6680 64 SUPERFAMILY SSF57802 4 37 8.64E-7 T 13-10-2018 trd_1404 f2a82c98a0c000bce9fab5ed10678385 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 279 2.9E-31 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_0805 371c243cb84cedf52186cc53519471fe 181 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 10 180 1.9E-29 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 trd_0805 371c243cb84cedf52186cc53519471fe 181 Gene3D G3DSA:3.40.50.300 1 181 6.7E-29 T 13-10-2018 trd_0805 371c243cb84cedf52186cc53519471fe 181 SUPERFAMILY SSF52540 7 169 5.84E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0704 5765543a85b1ae8ddb287a9f00b1f693 396 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 14 274 4.9E-36 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain trd_A0704 5765543a85b1ae8ddb287a9f00b1f693 396 SUPERFAMILY SSF53850 14 374 1.09E-44 T 13-10-2018 trd_A0704 5765543a85b1ae8ddb287a9f00b1f693 396 Gene3D G3DSA:3.10.105.10 106 351 2.0E-41 T 13-10-2018 trd_A0704 5765543a85b1ae8ddb287a9f00b1f693 396 Gene3D G3DSA:3.40.190.10 11 100 1.5E-5 T 13-10-2018 trd_0658 a3697cdf460480dc00146c114a0e2563 368 Pfam PF13439 Glycosyltransferase Family 4 60 170 1.9E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 trd_0658 a3697cdf460480dc00146c114a0e2563 368 SUPERFAMILY SSF53756 17 364 2.55E-75 T 13-10-2018 trd_0658 a3697cdf460480dc00146c114a0e2563 368 Pfam PF00534 Glycosyl transferases group 1 191 342 5.0E-31 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 trd_0658 a3697cdf460480dc00146c114a0e2563 368 Gene3D G3DSA:3.40.50.2000 67 360 4.0E-68 T 13-10-2018 trd_0658 a3697cdf460480dc00146c114a0e2563 368 Gene3D G3DSA:3.40.50.2000 168 345 4.0E-68 T 13-10-2018 trd_0183 48b03d5696c15ed94253dc274b0371d7 260 Gene3D G3DSA:3.20.20.70 1 258 6.3E-110 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 trd_0183 48b03d5696c15ed94253dc274b0371d7 260 SUPERFAMILY SSF51366 1 252 1.26E-84 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 trd_0183 48b03d5696c15ed94253dc274b0371d7 260 Pfam PF00977 Histidine biosynthesis protein 5 234 8.4E-89 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 trd_0183 48b03d5696c15ed94253dc274b0371d7 260 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 4.3E-116 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 trd_0183 48b03d5696c15ed94253dc274b0371d7 260 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 49.37 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 trd_A0537 a8697c0637fc723cfc9caa59317ad254 249 SUPERFAMILY SSF117916 4 84 2.68E-14 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_A0537 a8697c0637fc723cfc9caa59317ad254 249 Pfam PF01883 Iron-sulfur cluster assembly protein 5 74 1.2E-9 T 13-10-2018 IPR002744 MIP18 family-like trd_A0537 a8697c0637fc723cfc9caa59317ad254 249 Gene3D G3DSA:3.30.300.130 2 93 3.8E-15 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_A0491 b1f8ff05b75c381b70fb58e4038823ec 596 SUPERFAMILY SSF50969 43 384 1.33E-14 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like trd_A0491 b1f8ff05b75c381b70fb58e4038823ec 596 Gene3D G3DSA:2.130.10.10 8 354 5.4E-9 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 129 204 4.4E-10 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 308 379 2.9E-23 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 223 293 2.1E-28 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 43 113 3.5E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 222 306 2.98E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1036 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 124 216 1.5E-14 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 36 123 4.1E-17 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 295 381 9.29E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1036 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 28 138 6.04E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 245 266 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 134 150 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 63 77 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 362 380 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 110 129 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 45 63 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 323 342 3.8E-46 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 220 303 4.7E-29 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 304 388 2.2E-26 T 13-10-2018 trd_1036 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 129 217 7.8E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold trd_1036 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 44 112 4.1E-9 T 13-10-2018 IPR003029 S1 domain GO:0003676 trd_1036 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 128 202 2.5E-11 T 13-10-2018 IPR003029 S1 domain GO:0003676 trd_1036 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 307 379 2.5E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 trd_1036 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 223 293 9.8E-23 T 13-10-2018 IPR003029 S1 domain GO:0003676 trd_1774 d84e6c96c466e20eaa418922ef3ccb06 327 Pfam PF10343 Potential Queuosine, Q, salvage protein family 56 327 4.8E-86 T 13-10-2018 IPR019438 Queuosine salvage protein family trd_0479 00010d8a041f801fc501cfa5a3f17e01 165 Pfam PF05425 Copper resistance protein D 50 154 1.8E-13 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 trd_A0033 783d637adc81eafe6fd22c9c2a64a169 76 Pfam PF06289 Flagellar protein (FlbD) 1 57 8.0E-24 T 13-10-2018 IPR009384 Swarming motility protein SwrD-like trd_A0538 2d132e7059cd5552e169055fffa90e82 344 Pfam PF04909 Amidohydrolase 12 320 1.3E-43 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 trd_A0538 2d132e7059cd5552e169055fffa90e82 344 SUPERFAMILY SSF51556 10 324 9.28E-48 T 13-10-2018 IPR032466 Metal-dependent hydrolase trd_A0538 2d132e7059cd5552e169055fffa90e82 344 Gene3D G3DSA:3.20.20.140 40 326 2.2E-45 T 13-10-2018 trd_0665 7b48419f15fb10d0c5908cfe4d7ebfd7 222 Pfam PF13197 Protein of unknown function (DUF4013) 23 184 1.8E-28 T 13-10-2018 IPR025098 Protein of unknown function DUF4013 trd_0327 af3d40534b85ea96306ca19bad085f57 119 Pfam PF12831 FAD dependent oxidoreductase 24 107 4.8E-14 T 13-10-2018 IPR039649 Digeranylgeranylglycerophospholipid reductase, N-terminal trd_1655 6573aeaeac5793b6ea71af0a6b79f1c6 781 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 221 229 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 trd_0488 f594b0fa68648d012c8df8985c0ca815 134 SUPERFAMILY SSF140663 11 112 2.88E-28 T 13-10-2018 IPR023203 TTHA0068-like superfamily trd_0488 f594b0fa68648d012c8df8985c0ca815 134 Pfam PF03745 Domain of unknown function (DUF309) 20 74 1.4E-18 T 13-10-2018 IPR005500 Protein of unknown function DUF309 trd_0488 f594b0fa68648d012c8df8985c0ca815 134 Gene3D G3DSA:1.20.58.500 13 107 4.4E-23 T 13-10-2018 trd_A0494 1476e44230184a401bdc8dedce832206 403 SUPERFAMILY SSF75011 81 357 2.62E-9 T 13-10-2018 trd_A0494 1476e44230184a401bdc8dedce832206 403 Gene3D G3DSA:2.130.10.10 165 373 1.2E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_0465 0dfadf22a8287348191a164064b311ac 179 Pfam PF11821 Protein of unknown function (DUF3341) 6 165 6.8E-34 T 13-10-2018 IPR021776 Protein of unknown function DUF3341 trd_1524 9f4d7a7f3d4e605d6016291eb63b2205 315 SUPERFAMILY SSF161098 92 299 8.34E-19 T 13-10-2018 IPR035906 MetI-like superfamily trd_1524 9f4d7a7f3d4e605d6016291eb63b2205 315 Gene3D G3DSA:1.10.3720.10 85 307 9.8E-26 T 13-10-2018 IPR035906 MetI-like superfamily trd_1524 9f4d7a7f3d4e605d6016291eb63b2205 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 313 4.6E-44 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_1741 677acf7002dee2035222f04a4d0cb3d2 206 Gene3D G3DSA:3.30.40.60 89 176 2.6E-22 T 13-10-2018 trd_1741 677acf7002dee2035222f04a4d0cb3d2 206 Pfam PF14279 HNH endonuclease 112 164 7.4E-17 T 13-10-2018 IPR029471 HNH endonuclease 5 trd_1741 677acf7002dee2035222f04a4d0cb3d2 206 SMART SM00507 99 150 2.3E-14 T 13-10-2018 IPR003615 HNH nuclease trd_A0103 c83eeed44a2141cd3a103c646525b8f4 1108 SUPERFAMILY SSF52540 37 313 7.94E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0365 c04270d5efc42582394076d2a528c8fe 147 SUPERFAMILY SSF54637 5 133 4.45E-34 T 13-10-2018 IPR029069 HotDog domain superfamily trd_A0365 c04270d5efc42582394076d2a528c8fe 147 Pfam PF13279 Thioesterase-like superfamily 12 131 2.8E-6 T 13-10-2018 trd_A0365 c04270d5efc42582394076d2a528c8fe 147 Gene3D G3DSA:3.10.129.10 2 143 1.2E-33 T 13-10-2018 trd_1399 4ffc351784fa99a088640c9d5dd5854b 350 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 299 3.2E-35 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_0864 025e93313087ab003180dd8b4601ba26 191 Pfam PF00025 ADP-ribosylation factor family 63 151 1.1E-5 T 13-10-2018 IPR006689 Small GTPase superfamily, ARF/SAR type GO:0005525 trd_0864 025e93313087ab003180dd8b4601ba26 191 SUPERFAMILY SSF52540 10 189 5.06E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_0864 025e93313087ab003180dd8b4601ba26 191 Gene3D G3DSA:3.40.50.300 1 191 7.6E-75 T 13-10-2018 trd_A0559 ccfdc99802fb5b0060d4debb55bd4623 254 SUPERFAMILY SSF54909 37 248 5.63E-53 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel trd_A0559 ccfdc99802fb5b0060d4debb55bd4623 254 Gene3D G3DSA:3.30.70.1100 136 253 1.6E-29 T 13-10-2018 trd_A0559 ccfdc99802fb5b0060d4debb55bd4623 254 Pfam PF06778 Chlorite dismutase 59 242 1.8E-54 T 13-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase trd_0664 a57027086799ed516aac63cd5fc40539 237 Pfam PF13197 Protein of unknown function (DUF4013) 23 182 9.4E-18 T 13-10-2018 IPR025098 Protein of unknown function DUF4013 trd_A0235 c6f4e7c22b4e87bcfd63c3f6dce75d10 283 TIGRFAM TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter 55 272 5.9E-68 T 13-10-2018 IPR006469 NifC-like ABC-type porter GO:0005215|GO:0016020|GO:0055085 trd_A0235 c6f4e7c22b4e87bcfd63c3f6dce75d10 283 SUPERFAMILY SSF161098 26 275 4.47E-54 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0235 c6f4e7c22b4e87bcfd63c3f6dce75d10 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 276 9.7E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0235 c6f4e7c22b4e87bcfd63c3f6dce75d10 283 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 73 276 4.0E-58 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 trd_A0235 c6f4e7c22b4e87bcfd63c3f6dce75d10 283 Gene3D G3DSA:1.10.3720.10 26 282 9.4E-62 T 13-10-2018 IPR035906 MetI-like superfamily trd_1419 4aeb7d58131f92028e2d796f791fe1ad 49 Gene3D G3DSA:3.40.30.10 13 49 4.0E-5 T 13-10-2018 trd_A0143 da35c51d8a5a08ef56a0f89d2f9e961d 316 SUPERFAMILY SSF48371 152 282 2.06E-8 T 13-10-2018 IPR016024 Armadillo-type fold trd_1657 0553fda9885e7ac9e144d4f0d31f8142 530 Gene3D G3DSA:1.10.10.2840 391 522 8.7E-25 T 13-10-2018 trd_1657 0553fda9885e7ac9e144d4f0d31f8142 530 Pfam PF13556 PucR C-terminal helix-turn-helix domain 461 517 1.5E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain trd_1024 d3de0d8a4ba221d36ea4d90431096f93 149 SUPERFAMILY SSF49764 19 139 1.88E-26 T 13-10-2018 IPR008978 HSP20-like chaperone trd_1024 d3de0d8a4ba221d36ea4d90431096f93 149 Pfam PF00011 Hsp20/alpha crystallin family 47 138 1.7E-13 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain trd_1024 d3de0d8a4ba221d36ea4d90431096f93 149 Gene3D G3DSA:2.60.40.790 2 143 2.4E-26 T 13-10-2018 IPR008978 HSP20-like chaperone trd_1980 447aef11698d644ee73c94baa6c8b16c 608 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 386 598 1.3E-13 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase trd_1980 447aef11698d644ee73c94baa6c8b16c 608 SUPERFAMILY SSF56219 381 606 6.54E-35 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily trd_1980 447aef11698d644ee73c94baa6c8b16c 608 Gene3D G3DSA:3.60.10.10 382 608 1.8E-50 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily trd_A0360 a3655542f2461c0c9b8c9f6b1d418df6 160 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 117 3.8E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain trd_A0360 a3655542f2461c0c9b8c9f6b1d418df6 160 SUPERFAMILY SSF54593 3 123 8.99E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_A0360 a3655542f2461c0c9b8c9f6b1d418df6 160 Gene3D G3DSA:3.10.180.10 3 120 3.5E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase trd_0140 5660f224eec68c4beb746c206c3d4d40 310 Gene3D G3DSA:3.60.21.10 44 304 5.5E-37 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like trd_0140 5660f224eec68c4beb746c206c3d4d40 310 Pfam PF00149 Calcineurin-like phosphoesterase 66 229 7.3E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 trd_0140 5660f224eec68c4beb746c206c3d4d40 310 SUPERFAMILY SSF56300 69 296 5.51E-42 T 13-10-2018 trd_A0021 e190098b34704f22885ad0ff536ec208 223 Pfam PF04972 BON domain 155 221 1.2E-18 T 13-10-2018 IPR007055 BON domain trd_A0021 e190098b34704f22885ad0ff536ec208 223 Pfam PF04972 BON domain 6 74 5.2E-20 T 13-10-2018 IPR007055 BON domain trd_A0021 e190098b34704f22885ad0ff536ec208 223 Pfam PF04972 BON domain 81 149 1.1E-20 T 13-10-2018 IPR007055 BON domain trd_A0021 e190098b34704f22885ad0ff536ec208 223 SMART SM00749 158 222 2.0E-8 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria trd_A0021 e190098b34704f22885ad0ff536ec208 223 SMART SM00749 11 78 0.079 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria trd_A0021 e190098b34704f22885ad0ff536ec208 223 SMART SM00749 86 149 4.9E-4 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria trd_1801 06a12b1cfad0451a54754e12fca57710 820 Pfam PF09586 Bacterial membrane protein YfhO 713 781 5.0E-12 T 13-10-2018 IPR018580 Uncharacterised protein family YfhO trd_A0268 a4a2c6568224d7214778edea7e13cc4c 476 SUPERFAMILY SSF53850 77 460 1.53E-70 T 13-10-2018 trd_A0268 a4a2c6568224d7214778edea7e13cc4c 476 Gene3D G3DSA:3.40.190.10 73 466 6.1E-97 T 13-10-2018 trd_A0268 a4a2c6568224d7214778edea7e13cc4c 476 Pfam PF13416 Bacterial extracellular solute-binding protein 95 409 1.7E-47 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein trd_1009 baa0e90fdaf2a0ed106b97628d6e6a0b 303 Pfam PF00482 Type II secretion system (T2SS), protein F 166 291 2.0E-18 T 13-10-2018 IPR018076 Type II secretion system F domain trd_1763 c7632596c95761076182bbbf74466f5a 328 SUPERFAMILY SSF55797 203 323 9.59E-18 T 13-10-2018 IPR035940 CAP superfamily trd_1763 c7632596c95761076182bbbf74466f5a 328 Pfam PF00188 Cysteine-rich secretory protein family 206 322 1.5E-14 T 13-10-2018 IPR014044 CAP domain trd_1763 c7632596c95761076182bbbf74466f5a 328 Gene3D G3DSA:3.40.33.10 187 324 1.3E-31 T 13-10-2018 IPR035940 CAP superfamily trd_1542 cb8abcb34207383659fde88d82b70d2d 183 Pfam PF00643 B-box zinc finger 7 36 1.3E-6 T 13-10-2018 IPR000315 B-box-type zinc finger GO:0005622|GO:0008270 trd_1542 cb8abcb34207383659fde88d82b70d2d 183 SUPERFAMILY SSF57845 4 36 1.03E-5 T 13-10-2018 trd_1864 a88e026377c274d2ddbd3012b09273f9 75 SUPERFAMILY SSF52833 2 64 5.24E-12 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_1864 a88e026377c274d2ddbd3012b09273f9 75 Pfam PF00462 Glutaredoxin 5 64 5.7E-12 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 trd_1864 a88e026377c274d2ddbd3012b09273f9 75 Gene3D G3DSA:3.40.30.10 2 70 1.1E-14 T 13-10-2018 trd_1007 340f1e0dfc3fe5151eb84828a93648ca 137 Gene3D G3DSA:2.60.120.1140 3 123 1.3E-10 T 13-10-2018 IPR038695 Saro_0823-like superfamily trd_1007 340f1e0dfc3fe5151eb84828a93648ca 137 Pfam PF02643 Uncharacterized ACR, COG1430 21 116 4.5E-19 T 13-10-2018 IPR003795 Protein of unknown function DUF192 trd_1751 a097ecd2a4eeff0d6f1d850bcdfce25d 223 Gene3D G3DSA:1.10.10.1320 5 75 1.2E-5 T 13-10-2018 trd_A0345 684189381a2b2fa81978a2880f7f38d0 481 Pfam PF02386 Cation transport protein 73 463 2.0E-58 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 trd_0231 1105d3752255eaad40d4301abc9e7bc3 116 Gene3D G3DSA:3.40.50.300 24 115 2.2E-8 T 13-10-2018 trd_0231 1105d3752255eaad40d4301abc9e7bc3 116 SUPERFAMILY SSF52540 1 110 2.07E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase trd_A0426 89563ae2c1467a010b467e5d427edeb6 184 Pfam PF01957 NfeD-like C-terminal, partner-binding 46 167 1.4E-8 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain trd_A0426 89563ae2c1467a010b467e5d427edeb6 184 Gene3D G3DSA:2.40.50.140 91 170 3.4E-10 T 13-10-2018 trd_1129 7bd1adc8d63ad341452c04014ec3ad8b 261 SUPERFAMILY SSF51621 1 247 6.57E-67 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 trd_1129 7bd1adc8d63ad341452c04014ec3ad8b 261 Gene3D G3DSA:3.20.20.60 1 256 1.3E-77 T 13-10-2018 trd_1129 7bd1adc8d63ad341452c04014ec3ad8b 261 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 23 238 4.0E-32 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 trd_1733 57735e5fa5eff50472223076d458136d 337 SUPERFAMILY SSF52518 16 333 1.63E-109 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold trd_1733 57735e5fa5eff50472223076d458136d 337 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 17 331 8.6E-137 T 13-10-2018 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 trd_1733 57735e5fa5eff50472223076d458136d 337 Pfam PF00676 Dehydrogenase E1 component 26 322 1.2E-96 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 trd_1733 57735e5fa5eff50472223076d458136d 337 Gene3D G3DSA:3.40.50.970 3 337 1.7E-140 T 13-10-2018 trd_A0721 ed1b530a1a498384d347bd0749d03d7b 60 SUPERFAMILY SSF89447 2 34 3.84E-6 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily trd_A0721 ed1b530a1a498384d347bd0749d03d7b 60 Gene3D G3DSA:2.10.260.10 2 38 3.0E-6 T 13-10-2018 trd_A0721 ed1b530a1a498384d347bd0749d03d7b 60 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 5 34 1.0E-5 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 trd_A0560 ac1f349496d3319291af17f91761839e 182 Pfam PF01940 Integral membrane protein DUF92 1 163 2.6E-41 T 13-10-2018 IPR002794 Protein of unknown function DUF92, TMEM19 GO:0016021 trd_0844 8400f76ec0e399ad191cde0f04b956a9 381 SUPERFAMILY SSF82171 78 301 1.1E-7 T 13-10-2018 trd_1174 49d29c7be1c40514bca52bc108ef794b 465 SUPERFAMILY SSF75011 56 403 4.05E-25 T 13-10-2018 trd_1174 49d29c7be1c40514bca52bc108ef794b 465 Pfam PF05694 56kDa selenium binding protein (SBP56) 5 463 1.4E-200 T 13-10-2018 IPR008826 Selenium-binding protein GO:0008430 trd_0027 e4e485df3381d5595da4174cdc7ac364 447 Gene3D G3DSA:3.90.1150.10 61 429 8.0E-127 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 trd_0027 e4e485df3381d5595da4174cdc7ac364 447 Gene3D G3DSA:3.40.640.10 104 322 8.0E-127 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 trd_0027 e4e485df3381d5595da4174cdc7ac364 447 SUPERFAMILY SSF53383 55 431 6.39E-107 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase trd_0027 e4e485df3381d5595da4174cdc7ac364 447 Pfam PF00155 Aminotransferase class I and II 68 410 4.9E-34 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 trd_1321 d6e01205f75ad7436d23f126283fab20 163 Pfam PF03473 MOSC domain 55 156 2.5E-11 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 trd_1321 d6e01205f75ad7436d23f126283fab20 163 Gene3D G3DSA:2.40.33.20 1 163 1.0E-33 T 13-10-2018 trd_1321 d6e01205f75ad7436d23f126283fab20 163 SUPERFAMILY SSF50800 4 159 1.62E-35 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily trd_1885 71881cbc121d0391b382cf1fc1f6f2d7 157 Gene3D G3DSA:1.20.120.450 1 152 5.2E-25 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_1885 71881cbc121d0391b382cf1fc1f6f2d7 157 SUPERFAMILY SSF109854 1 148 1.28E-19 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_1885 71881cbc121d0391b382cf1fc1f6f2d7 157 Pfam PF05163 DinB family 4 152 2.2E-15 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB trd_1085 0b09dc2d82966bcffd4116620dd8c627 312 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 24 213 5.4E-65 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 trd_1085 0b09dc2d82966bcffd4116620dd8c627 312 Pfam PF02096 60Kd inner membrane protein 26 213 5.1E-64 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 trd_1576 db58d5389cc7984d0704065ed6a56ae9 247 SUPERFAMILY SSF89392 80 243 4.71E-7 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX trd_A0609 3dd495a093aea7e8cee9778ef4513c23 268 SMART SM00867 92 265 1.1E-17 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like trd_A0609 3dd495a093aea7e8cee9778ef4513c23 268 Gene3D G3DSA:2.40.128.110 93 266 2.6E-29 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily trd_A0609 3dd495a093aea7e8cee9778ef4513c23 268 Pfam PF04264 YceI-like domain 94 263 2.5E-23 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like trd_A0609 3dd495a093aea7e8cee9778ef4513c23 268 SUPERFAMILY SSF101874 117 267 7.32E-25 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily trd_A0150 100a4fe6ddc774f4180c7b68c5db272d 360 Pfam PF02628 Cytochrome oxidase assembly protein 47 93 1.1E-7 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 trd_A0150 100a4fe6ddc774f4180c7b68c5db272d 360 Pfam PF02628 Cytochrome oxidase assembly protein 94 331 3.0E-25 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 trd_A0490 d897f57652fb2a6d9448045f441ef0d8 187 SUPERFAMILY SSF52833 42 160 4.88E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily trd_A0515 dd060ac4f8533822e3c7c9ce810afd59 533 Pfam PF02538 Hydantoinase B/oxoprolinase 8 532 1.4E-214 T 13-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 trd_A0710 c290804755e095f6f57245896e655462 102 Gene3D G3DSA:3.30.379.10 1 102 6.8E-6 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 trd_A0502 975f480c5e41c6dff46157c685b58d9f 418 Gene3D G3DSA:2.130.10.10 26 382 3.8E-15 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_A0502 975f480c5e41c6dff46157c685b58d9f 418 SUPERFAMILY SSF50998 77 373 4.32E-7 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily trd_1254 177059dda1ac3654a9d63171b5b9b6a7 319 Gene3D G3DSA:1.10.3720.10 86 311 4.0E-24 T 13-10-2018 IPR035906 MetI-like superfamily trd_1254 177059dda1ac3654a9d63171b5b9b6a7 319 SUPERFAMILY SSF161098 90 303 7.33E-20 T 13-10-2018 IPR035906 MetI-like superfamily trd_1254 177059dda1ac3654a9d63171b5b9b6a7 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 317 2.4E-41 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0130 bd985046d91c6ee3230e1993d845dd12 459 SUPERFAMILY SSF47240 49 189 1.54E-6 T 13-10-2018 IPR009078 Ferritin-like superfamily trd_A0130 bd985046d91c6ee3230e1993d845dd12 459 Pfam PF13668 Ferritin-like domain 51 185 1.4E-15 T 13-10-2018 trd_A0897 8c9073b1a6cc5a7d653ade43e8b3e218 419 SUPERFAMILY SSF103473 30 413 6.28E-40 T 13-10-2018 IPR036259 MFS transporter superfamily trd_A0897 8c9073b1a6cc5a7d653ade43e8b3e218 419 Pfam PF05977 Transmembrane secretion effector 27 409 6.8E-48 T 13-10-2018 IPR010290 Transmembrane secretion effector trd_A0897 8c9073b1a6cc5a7d653ade43e8b3e218 419 Gene3D G3DSA:1.20.1250.20 28 412 2.5E-31 T 13-10-2018 trd_0006 698986d06ab65e0f836035bb5eac18d7 341 Gene3D G3DSA:3.40.50.1100 61 157 2.3E-105 T 13-10-2018 trd_0006 698986d06ab65e0f836035bb5eac18d7 341 SUPERFAMILY SSF53686 12 317 5.76E-97 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme trd_0006 698986d06ab65e0f836035bb5eac18d7 341 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 31 313 1.6E-82 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme trd_0006 698986d06ab65e0f836035bb5eac18d7 341 Gene3D G3DSA:3.40.50.1100 18 318 2.3E-105 T 13-10-2018 trd_A0190 41da7eb8a14c5f04e77a2c32e4757b72 150 Pfam PF05573 NosL 18 141 5.1E-15 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL trd_A0190 41da7eb8a14c5f04e77a2c32e4757b72 150 SUPERFAMILY SSF160387 49 146 2.88E-23 T 13-10-2018 trd_1786 22e13177981934d8fb0ca5cb106f081a 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 102 19.816 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 trd_1786 22e13177981934d8fb0ca5cb106f081a 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 9 98 9.3E-26 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like trd_A0102 62f384abc3df5ee0d040c40ec0132e71 316 Pfam PF13182 Protein of unknown function (DUF4007) 24 308 8.2E-88 T 13-10-2018 IPR025248 Domain of unknown function DUF4007 trd_1171 e2f11be0c743fc54a93f5d55accbdc0d 188 SUPERFAMILY SSF82784 12 171 2.49E-47 T 13-10-2018 IPR036102 OsmC/Ohr superfamily trd_1171 e2f11be0c743fc54a93f5d55accbdc0d 188 Gene3D G3DSA:3.30.300.20 4 160 8.0E-51 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta trd_1171 e2f11be0c743fc54a93f5d55accbdc0d 188 Pfam PF02566 OsmC-like protein 64 168 2.9E-26 T 13-10-2018 IPR003718 OsmC/Ohr family trd_0447 c7189f233da2f4fbd47eb53239bdddaf 363 Gene3D G3DSA:3.20.20.210 1 363 2.4E-115 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_0447 c7189f233da2f4fbd47eb53239bdddaf 363 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 8 335 1.7E-21 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 trd_0447 c7189f233da2f4fbd47eb53239bdddaf 363 SUPERFAMILY SSF51726 6 362 7.59E-64 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 trd_A0030 8ba0ca581b34441442f9f8d629e9a113 181 Pfam PF03748 Flagellar basal body-associated protein FliL 62 181 1.1E-21 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 trd_0905 e968f6e40df164a8b94ea97f263f4780 227 Gene3D G3DSA:3.50.30.40 24 174 6.1E-45 T 13-10-2018 trd_0905 e968f6e40df164a8b94ea97f263f4780 227 Pfam PF03737 Aldolase/RraA 30 173 2.3E-33 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein trd_0905 e968f6e40df164a8b94ea97f263f4780 227 SUPERFAMILY SSF89562 22 184 7.72E-41 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily trd_1004 a2ef29a5e2422a3198cd33604aaa8e46 235 SUPERFAMILY SSF53271 44 232 1.06E-24 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like trd_1004 a2ef29a5e2422a3198cd33604aaa8e46 235 Gene3D G3DSA:3.40.50.2020 93 234 3.1E-12 T 13-10-2018 trd_1739 391d1808dea84bbe2fae7a910923065e 113 Pfam PF01594 AI-2E family transporter 24 107 5.0E-8 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like trd_A0587 939c6788bf7089e4dc4288c2bbfe73d4 311 Pfam PF01136 Peptidase family U32 131 221 1.1E-6 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 trd_1010 c212cd0b0dd7271cee0e313c2308d32e 323 Pfam PF00482 Type II secretion system (T2SS), protein F 158 281 4.1E-21 T 13-10-2018 IPR018076 Type II secretion system F domain trd_1010 c212cd0b0dd7271cee0e313c2308d32e 323 Gene3D G3DSA:1.20.81.30 150 259 1.1E-11 T 13-10-2018 trd_0154 8e1fa2371fa89dfe9d0a9d93ece70d4e 405 Pfam PF02754 Cysteine-rich domain 218 315 3.7E-7 T 13-10-2018 IPR004017 Cysteine-rich domain trd_A0260 a0850ba476e498f64eea7f577ffa46ab 426 SUPERFAMILY SSF50998 66 408 7.32E-13 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily trd_1335 32a4fe057107ce24e2b6d00453c25a80 280 Pfam PF01925 Sulfite exporter TauE/SafE 10 265 1.3E-44 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 trd_0186 bb0e63b2f6454552dcd6e749f8b1495b 299 Pfam PF12730 ABC-2 family transporter protein 4 203 1.4E-11 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 trd_A0558 e6158840b16aa0a506031670e32c1a6b 89 Pfam PF01940 Integral membrane protein DUF92 20 85 2.6E-12 T 13-10-2018 IPR002794 Protein of unknown function DUF92, TMEM19 GO:0016021 trd_0362 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 Gene3D G3DSA:3.20.20.370 69 297 1.5E-76 T 13-10-2018 trd_0362 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 SUPERFAMILY SSF88713 99 271 6.18E-46 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 trd_0362 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 Pfam PF01522 Polysaccharide deacetylase 134 260 1.2E-34 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 trd_1150 bee47da1e85b4236942f05e2de270407 240 Pfam PF01061 ABC-2 type transporter 11 208 3.1E-18 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 trd_1150 bee47da1e85b4236942f05e2de270407 240 PIRSF PIRSF006648 1 240 2.2E-24 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0301 56cd8184a0f40174b98eee2526f3a435 90 Gene3D G3DSA:3.30.300.130 2 86 1.5E-5 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily trd_A0787 7005db96a4162a6df2a424e3bc13d37b 286 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 7 277 15.212 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 trd_A0787 7005db96a4162a6df2a424e3bc13d37b 286 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 9 274 7.1E-39 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 trd_A0787 7005db96a4162a6df2a424e3bc13d37b 286 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 10 272 9.2E-55 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 trd_A0601 dd3a5a4dc2543959c08e390c5cf960a7 296 PRINTS PR01217 Proline rich extensin signature 109 126 4.1E-9 T 13-10-2018 trd_A0601 dd3a5a4dc2543959c08e390c5cf960a7 296 PRINTS PR01217 Proline rich extensin signature 47 59 4.1E-9 T 13-10-2018 trd_A0601 dd3a5a4dc2543959c08e390c5cf960a7 296 PRINTS PR01217 Proline rich extensin signature 89 105 4.1E-9 T 13-10-2018 trd_A0601 dd3a5a4dc2543959c08e390c5cf960a7 296 PRINTS PR01217 Proline rich extensin signature 61 82 4.1E-9 T 13-10-2018 trd_1678 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF69322 251 550 4.58E-5 T 13-10-2018 trd_1678 7730044ae351e51ce7adf611142cc76c 601 Gene3D G3DSA:2.130.10.10 16 252 4.9E-16 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 trd_1678 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF50939 109 430 3.33E-22 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 trd_A0647 f53de226d440edffac6a9a348d0b95a6 155 Pfam PF02050 Flagellar FliJ protein 24 146 3.8E-9 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 trd_A0647 f53de226d440edffac6a9a348d0b95a6 155 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 10 149 3.6E-14 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 trd_1435 80d27564c497c3392cef2bece899946c 425 Pfam PF01098 Cell cycle protein 68 418 3.4E-80 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_1435 80d27564c497c3392cef2bece899946c 425 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 66 417 5.5E-102 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 Pfam PF01578 Cytochrome C assembly protein 92 295 2.4E-39 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 317 636 8.0E-61 T 13-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 188 203 1.3E-16 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 3 27 1.3E-16 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.3E-16 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 393 412 1.3E-16 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 350 367 1.3E-16 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 79 105 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 158 180 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 243 263 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 131 148 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 273 293 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 209 235 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1222 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 293 309 1.0E-50 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 trd_1721 457829b6a570ac874c565c1f761ba6a7 202 Pfam PF12773 Double zinc ribbon 3 52 2.6E-8 T 13-10-2018 IPR025874 Double zinc ribbon trd_0653 01a85f32ed1441d36122bd862d58c96f 315 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 284 4.8E-30 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 trd_1928 6484e044967e5c306d32ddff7f3455b8 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 4 145 2.1E-9 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 trd_A0205 413891d699dd911f8b2486856ad4fe54 534 Gene3D G3DSA:1.10.10.2840 403 527 2.5E-30 T 13-10-2018 trd_A0205 413891d699dd911f8b2486856ad4fe54 534 Pfam PF07905 Purine catabolism regulatory protein-like family 5 124 1.2E-36 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain trd_A0205 413891d699dd911f8b2486856ad4fe54 534 Pfam PF13556 PucR C-terminal helix-turn-helix domain 465 523 6.5E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain trd_0440 313cf59ac81bbcb45c50d577c6d28d3b 402 Pfam PF04015 Domain of unknown function (DUF362) 44 249 2.9E-28 T 13-10-2018 IPR007160 Domain of unknown function DUF362 trd_A0374 7c33a41d035fad9020c98429c7af583d 140 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 8 132 4.5E-33 T 13-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein trd_1738 427f53d2f0a65fe1ce9781da02535977 119 Pfam PF01594 AI-2E family transporter 6 119 9.6E-12 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like trd_A0354 7417ff872c12b841acb412b9d3cfd8a7 357 Pfam PF12698 ABC-2 family transporter protein 22 349 6.2E-38 T 13-10-2018 trd_A0267 d191ae4049a708cb7c4da04d48d91f0c 280 Gene3D G3DSA:1.10.3720.10 3 271 1.1E-58 T 13-10-2018 IPR035906 MetI-like superfamily trd_A0267 d191ae4049a708cb7c4da04d48d91f0c 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 270 2.3E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 trd_A0267 d191ae4049a708cb7c4da04d48d91f0c 280 SUPERFAMILY SSF161098 9 280 2.09E-63 T 13-10-2018 IPR035906 MetI-like superfamily trd_1670 184939277cb64547340dc85a17af13fd 458 Pfam PF06271 RDD family 270 404 2.0E-20 T 13-10-2018 IPR010432 RDD trd_A0373 e31608202a72309a6869403b5af5284a 147 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 110 1.1E-27 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like trd_A0172 9f4af630b62c7e9678ba635d05e0b18f 118 Gene3D G3DSA:1.10.10.10 1 95 3.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily trd_A0172 9f4af630b62c7e9678ba635d05e0b18f 118 Pfam PF13601 Winged helix DNA-binding domain 12 92 3.2E-25 T 13-10-2018 IPR027395 Winged helix DNA-binding domain trd_A0172 9f4af630b62c7e9678ba635d05e0b18f 118 SUPERFAMILY SSF46785 5 93 1.18E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0063 5ec47708d42642e793a7c06d57f59d43 507 Pfam PF03773 Predicted permease 216 505 2.5E-27 T 13-10-2018 IPR005524 Predicted permease DUF318 trd_A0170 832858de2af02153bb58c79ada4b5f8e 247 Pfam PF01061 ABC-2 type transporter 5 213 1.5E-22 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 trd_A0170 832858de2af02153bb58c79ada4b5f8e 247 PIRSF PIRSF006648 2 247 9.9E-20 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 trd_0162 7919df5171dd27137e3f82735a5e4fbf 219 SUPERFAMILY SSF74784 7 187 1.57E-23 T 13-10-2018 IPR036081 Translin superfamily GO:0043565 Reactome: R-HSA-426486 trd_0162 7919df5171dd27137e3f82735a5e4fbf 219 Gene3D G3DSA:1.20.58.2140 7 206 5.2E-65 T 13-10-2018 trd_0259 277b2e5013f941108a959e4bfdf3c45a 77 Gene3D G3DSA:3.40.50.2300 1 46 1.1E-7 T 13-10-2018 trd_0259 277b2e5013f941108a959e4bfdf3c45a 77 SUPERFAMILY SSF53822 2 58 6.47E-5 T 13-10-2018 IPR028082 Periplasmic binding protein-like I trd_1637 3b0611d19465c26431fe6bae32e71352 413 Pfam PF13485 Peptidase MA superfamily 164 377 1.7E-32 T 13-10-2018 IPR039568 Peptidase MA-like trd_A0630 4b7da30e3430ae6713d18d45d0d1e802 92 Pfam PF02583 Metal-sensitive transcriptional repressor 12 85 1.5E-22 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 trd_A0630 4b7da30e3430ae6713d18d45d0d1e802 92 Gene3D G3DSA:1.20.58.1000 6 90 1.9E-23 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily trd_1578 266e0b82d435e6a2ed3b6f72384a3741 394 Pfam PF02646 RmuC family 120 374 9.6E-19 T 13-10-2018 IPR003798 DNA recombination RmuC trd_1578 266e0b82d435e6a2ed3b6f72384a3741 394 SUPERFAMILY SSF57997 38 161 2.06E-6 T 13-10-2018 trd_0622 0c3279e7960229a3377b41f6ef6e5279 330 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 17 317 1.4E-25 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0622 0c3279e7960229a3377b41f6ef6e5279 330 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 17 307 2.7E-36 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_A0046 279368aa485e02701d3f410a505163a5 103 SUPERFAMILY SSF101498 25 93 5.36E-8 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily trd_A0046 279368aa485e02701d3f410a505163a5 103 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 16 94 1.2E-12 T 13-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 trd_A0046 279368aa485e02701d3f410a505163a5 103 Pfam PF04316 Anti-sigma-28 factor, FlgM 47 93 1.7E-9 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal trd_A0873 a5eb6f543e406f564bbecb981c753203 456 Pfam PF04293 SpoVR like protein 8 394 3.0E-137 T 13-10-2018 IPR007390 Sporulation stage V, protein R trd_A0822 e1547d91642d8d0d153137ef76c69517 230 SUPERFAMILY SSF160246 56 116 8.37E-13 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily trd_A0822 e1547d91642d8d0d153137ef76c69517 230 Pfam PF14332 Domain of unknown function (DUF4388) 5 162 3.8E-14 T 13-10-2018 IPR025497 Domain of unknown function DUF4388 trd_A0822 e1547d91642d8d0d153137ef76c69517 230 SUPERFAMILY SSF46785 186 228 5.31E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily trd_A0618 b618d5db78c340a5c4873278d39ab3dd 440 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 8 53 4.5E-11 T 13-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal trd_0086 f9b61afeaec079fe1e44d2892f2e8716 262 SUPERFAMILY SSF53850 47 243 1.57E-7 T 13-10-2018 trd_A0853 441b5511978d67df31751c6e525fa176 321 Gene3D G3DSA:3.40.1190.20 2 321 1.1E-102 T 13-10-2018 IPR029056 Ribokinase-like trd_A0853 441b5511978d67df31751c6e525fa176 321 Pfam PF00294 pfkB family carbohydrate kinase 5 299 2.3E-50 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB trd_A0853 441b5511978d67df31751c6e525fa176 321 SUPERFAMILY SSF53613 3 312 2.03E-79 T 13-10-2018 IPR029056 Ribokinase-like trd_A0418 8aee8cda3405d3851a32cba89bfd8f82 396 Pfam PF01345 Domain of unknown function DUF11 141 230 9.5E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 trd_A0404 5790ec93c898372ba2683ab50bc2438f 252 SUPERFAMILY SSF109998 107 223 7.45E-5 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily trd_1115 e12680e26fed7e19eafca2f7e75f7daa 86 Pfam PF02325 YGGT family 10 75 2.0E-6 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 trd_A0529 a3a278c760601c68627ecd10384a2e21 69 Pfam PF02417 Chromate transporter 1 68 5.6E-17 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 trd_1480 84938a761eaf60eb7d7839abc1cc521b 145 Gene3D G3DSA:3.40.50.620 1 137 1.3E-18 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold trd_1480 84938a761eaf60eb7d7839abc1cc521b 145 SUPERFAMILY SSF52402 1 136 4.77E-18 T 13-10-2018 trd_1480 84938a761eaf60eb7d7839abc1cc521b 145 Pfam PF00582 Universal stress protein family 1 136 8.2E-17 T 13-10-2018 IPR006016 UspA trd_1904 59d57de1ccbbd61693b178464dcf7acb 84 Pfam PF02416 mttA/Hcf106 family 15 54 2.1E-10 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 trd_1577 4322b5e43156e5631c559db19d671a8c 233 SUPERFAMILY SSF89392 54 227 1.06E-5 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX trd_A0346 0065a4efea6ffccb498ea4d2264532ad 468 Pfam PF02386 Cation transport protein 65 456 2.8E-27 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 trd_1271 83dcccb8725d3e147ef4b02bbc5302cd 848 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 126 276 1.7E-12 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like trd_1271 83dcccb8725d3e147ef4b02bbc5302cd 848 TIGRFAM TIGR03663 TIGR03663: TIGR03663 family protein 79 532 3.6E-63 T 13-10-2018 IPR019962 Conserved hypothetical protein CHP03663 trd_1486 9d7b2c90ad7ebe18225221f5fe0a12a9 244 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 24 238 4.0E-20 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 trd_A0872 6afd5cdc6f2dba26eb42bc4bbb39c103 241 Pfam PF01478 Type IV leader peptidase family 101 206 1.4E-12 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 trd_1298 9b274cb8233ea3dae35106989d879c83 307 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 16 292 4.3E-29 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD trd_0346 3cb34b29a4dbb8955d3db35e437c2d38 203 Pfam PF09858 Predicted membrane protein (DUF2085) 75 164 1.6E-29 T 13-10-2018 IPR019206 Protein of unknown function DUF2085, transmembrane trd_1200 fd8ab7f3f5afa4014b674694da146eec 154 Gene3D G3DSA:1.20.120.450 1 146 2.6E-22 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_1200 fd8ab7f3f5afa4014b674694da146eec 154 Pfam PF08020 Protein of unknown function (DUF1706) 7 115 7.7E-10 T 13-10-2018 IPR012550 Protein of unknown function DUF1706 trd_1200 fd8ab7f3f5afa4014b674694da146eec 154 SUPERFAMILY SSF109854 6 134 2.75E-9 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_0081 8a99c202f869ef83955bb79ebbc549ad 318 Pfam PF03741 Integral membrane protein TerC family 70 274 5.1E-56 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 trd_0081 8a99c202f869ef83955bb79ebbc549ad 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 5 303 3.8E-130 T 13-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 trd_1371 4248c8d86d5d59eca61369471baaf8a2 457 Gene3D G3DSA:2.40.440.10 331 457 1.5E-27 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like trd_1371 4248c8d86d5d59eca61369471baaf8a2 457 SUPERFAMILY SSF141523 328 455 1.44E-23 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like trd_1371 4248c8d86d5d59eca61369471baaf8a2 457 Pfam PF03734 L,D-transpeptidase catalytic domain 331 455 8.9E-16 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 trd_A0090 2e11d4ade5425f0bca97a9584f212078 185 Pfam PF07155 ECF-type riboflavin transporter, S component 18 163 4.4E-32 T 13-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 trd_A0090 2e11d4ade5425f0bca97a9584f212078 185 Gene3D G3DSA:1.10.1760.20 16 171 1.4E-40 T 13-10-2018 trd_0203 735dd30e4796d11a3b7a14f7dada3822 328 SUPERFAMILY SSF55729 55 236 2.9E-11 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase trd_A0617 03abeb242d9e67eae31625dff298aaeb 136 Pfam PF07811 TadE-like protein 8 50 5.6E-19 T 13-10-2018 IPR012495 TadE-like trd_A0025 572708dd388430d1a40e466c36015191 390 Pfam PF02653 Branched-chain amino acid transport system / permease component 69 353 5.1E-33 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_A0118 f0903bb0ac46449413b7da46ad17ef44 219 SUPERFAMILY SSF90257 51 142 4.71E-5 T 13-10-2018 trd_A0579 88148c89c1d3a6c1897c45e6193c08c3 105 Pfam PF13798 Protein of unknown function with PCYCGC motif 38 101 2.7E-13 T 13-10-2018 IPR025673 Protein of unknown function with PCYCGC motif trd_A0636 fd14c9edf3f371c5f2c53b23221b7374 557 Pfam PF02653 Branched-chain amino acid transport system / permease component 249 520 2.0E-44 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_A0859 c9833c2ed4853051d19fefed642158e6 608 SUPERFAMILY SSF48208 204 597 3.71E-92 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 trd_A0859 c9833c2ed4853051d19fefed642158e6 608 Pfam PF00723 Glycosyl hydrolases family 15 228 538 2.6E-36 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 trd_A0859 c9833c2ed4853051d19fefed642158e6 608 Gene3D G3DSA:1.50.10.10 229 603 7.0E-86 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 trd_A0026 449382c1caefcc48122154740ef95668 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 238 1.4E-29 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 trd_0045 d1e1b1ed7c494b01272d21cba577940d 289 Pfam PF02674 Colicin V production protein 7 147 1.2E-14 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 trd_0019 39a9e228d325052f4a4720d1269b1072 235 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 5 47 1.8E-11 T 13-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal trd_1333 904a97cf293b7747784bce1f65d80ef7 144 Pfam PF07843 Protein of unknown function (DUF1634) 27 138 1.2E-26 T 13-10-2018 IPR012861 Protein of unknown function DUF1634 trd_0839 346c2e6e08b4d937283240c429aaec85 456 Pfam PF04932 O-Antigen ligase 257 389 3.7E-16 T 13-10-2018 IPR007016 O-antigen ligase-related trd_1099 38fdd94bccf8283499a1a41fda98cceb 153 Pfam PF13115 YtkA-like 32 114 1.6E-14 T 13-10-2018 IPR032693 YtkA-like domain trd_A0388 0f6c89d259da4278f03dccbd179bbc9c 158 Gene3D G3DSA:1.20.120.450 2 151 4.3E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_A0388 0f6c89d259da4278f03dccbd179bbc9c 158 SUPERFAMILY SSF109854 10 140 6.28E-6 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes trd_1962 67e0caefb6f21fb54f3b80ec9c04558f 80 Pfam PF11213 Protein of unknown function (DUF3006) 8 75 2.1E-14 T 13-10-2018 IPR021377 Protein of unknown function DUF3006 trd_A0649 e652c754142d0ad6c6a63a57870e5dc5 231 Pfam PF02108 Flagellar assembly protein FliH 95 219 2.5E-16 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE trd_0198 6c9f75502285ae6acd4ae4d89d9b9ab8 206 Pfam PF12773 Double zinc ribbon 95 138 7.8E-12 T 13-10-2018 IPR025874 Double zinc ribbon trd_0274 b966d268fbd39c7187c1856b03270c7e 384 Pfam PF07907 YibE/F-like protein 122 363 2.5E-74 T 13-10-2018 IPR012507 YibE/F-like trd_A0820 9f600ebc45f2df37a752ad0006de05fd 236 Pfam PF02706 Chain length determinant protein 2 56 2.4E-7 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 trd_1334 5d0ed4a3d20e5fb165d7dc7b1681f1ea 166 Pfam PF07843 Protein of unknown function (DUF1634) 66 154 2.5E-6 T 13-10-2018 IPR012861 Protein of unknown function DUF1634 trd_0152 7af5a811448efa8edd226d8462b58f92 80 Pfam PF11127 Protein of unknown function (DUF2892) 18 69 1.0E-11 T 13-10-2018 IPR021309 Protein of unknown function DUF2892 trd_A0664 9d49c5b9853ee6d075b34acec4da3707 217 Pfam PF09335 SNARE associated Golgi protein 34 159 5.0E-20 T 13-10-2018 IPR032816 SNARE associated Golgi protein trd_0893 0b6c447cf9941bde951213af42349ca9 290 SUPERFAMILY SSF46565 142 180 3.66E-6 T 13-10-2018 IPR036869 Chaperone J-domain superfamily trd_A0140 4b42f6aec73d05cabf33ef7c8b8dc6e1 199 ProDom PD102989 YKOP PLASMID 39 195 4.0E-10 T 13-10-2018 trd_1854 02a0e3fe40440d4af46ed6b364d88bce 84 Pfam PF02325 YGGT family 10 79 2.9E-21 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 trd_1823 c1f4d9faca741727189d91865946dbc5 287 Pfam PF09858 Predicted membrane protein (DUF2085) 63 163 1.3E-20 T 13-10-2018 IPR019206 Protein of unknown function DUF2085, transmembrane trd_0466 c17ee73623a8636dd24c1e1ff18825be 457 Pfam PF03916 Polysulphide reductase, NrfD 55 385 4.7E-20 T 13-10-2018 IPR005614 NrfD family trd_1439 9074694c83d6d44528a0e489c393050d 595 Gene3D G3DSA:2.60.40.10 247 338 1.4E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold trd_0475 b4692271a1c6b301386e5cc0644b2102 475 Pfam PF08239 Bacterial SH3 domain 46 102 5.4E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type trd_0475 b4692271a1c6b301386e5cc0644b2102 475 Gene3D G3DSA:2.30.30.40 40 103 7.4E-10 T 13-10-2018 trd_A0599 c480d7801d51856d4e65db5f171c77d5 480 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 446 475 0.001 T 13-10-2018 trd_0165 e79f23b4f5674904d736b539a3386d3b 335 Pfam PF07136 Protein of unknown function (DUF1385) 55 296 3.3E-77 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 trd_0165 e79f23b4f5674904d736b539a3386d3b 335 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 55 293 5.0E-54 T 13-10-2018 IPR010787 Protein of unknown function DUF1385