locus-tag class description THA_100 PF00575 S1 RNA binding domain THA_100 PF10150 Ribonuclease E/G family THA_1000 PF04542 Sigma-70 region 2 THA_1000 PF08281 Sigma-70, region 4 THA_1003 PF04055 Radical SAM superfamily THA_1003 PF00919 Uncharacterized protein family UPF0004 THA_1003 PF01938 TRAM domain THA_1004 PF08447 PAS fold THA_1004 PF13426 PAS domain THA_1004 PF08448 PAS fold THA_1004 PF05231 MASE1 THA_1004 PF00990 Diguanylate cyclase, GGDEF domain THA_1004 PF00563 EAL domain THA_1007 PF09178 Domain of unknown function (DUF1945) THA_1007 PF00128 Alpha amylase, catalytic domain THA_1008 PF01119 DNA mismatch repair protein, C-terminal domain THA_1008 PF08676 MutL C terminal dimerisation domain THA_1009 PF00672 HAMP domain THA_1009 PF17202 Single cache domain 3 THA_1009 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_101 PF00485 Phosphoribulokinase / Uridine kinase family THA_1010 PF00665 Integrase core domain THA_1010 PF13276 HTH-like domain THA_1014 PF00291 Pyridoxal-phosphate dependent enzyme THA_1016 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_1017 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_1017 PF00005 ABC transporter THA_1018 PF00005 ABC transporter THA_1018 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_1019 PF00528 Binding-protein-dependent transport system inner membrane component THA_1019 PF12911 N-terminal TM domain of oligopeptide transport permease C THA_1021 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THA_1024 PF02567 Phenazine biosynthesis-like protein THA_1025 PF00578 AhpC/TSA family THA_1027 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THA_1027 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THA_1027 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THA_1027 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THA_1038 PF00082 Subtilase family THA_1039 PF12557 Cob(I)alamin adenosyltransferase N terminal THA_1039 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP THA_104 PF17209 Hfq protein THA_1040 PF00155 Aminotransferase class I and II THA_1041 PF03186 CobD/Cbib protein THA_1042 PF07685 CobB/CobQ-like glutamine amidotransferase domain THA_1043 PF02654 Cobalamin-5-phosphate synthase THA_1045 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase THA_1046 PF02277 Phosphoribosyltransferase THA_1049 PF17155 Gammaproteobacterial periplasmic sensor domain THA_1049 PF00990 Diguanylate cyclase, GGDEF domain THA_105 PF01926 50S ribosome-binding GTPase THA_105 PF13167 GTP-binding GTPase N-terminal THA_105 PF16360 GTP-binding GTPase Middle Region THA_1054 PF00464 Serine hydroxymethyltransferase THA_1059 PF01915 Glycosyl hydrolase family 3 C-terminal domain THA_1059 PF00933 Glycosyl hydrolase family 3 N terminal domain THA_1060 PF13416 Bacterial extracellular solute-binding protein THA_1061 PF00528 Binding-protein-dependent transport system inner membrane component THA_1062 PF00528 Binding-protein-dependent transport system inner membrane component THA_1064 PF01979 Amidohydrolase family THA_1065 PF02277 Phosphoribosyltransferase THA_1067 PF02570 Precorrin-8X methylmutase THA_1068 PF01888 CbiD THA_1069 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THA_1072 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THA_1073 PF11760 Cobalamin synthesis G N-terminal THA_1073 PF11761 Cobalamin biosynthesis central region THA_1073 PF01890 Cobalamin synthesis G C-terminus THA_1074 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THA_1074 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THA_1075 PF02571 Precorrin-6x reductase CbiJ/CobK THA_1076 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain THA_1076 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THA_1076 PF01488 Shikimate / quinate 5-dehydrogenase THA_1077 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THA_1077 PF03900 Porphobilinogen deaminase, C-terminal domain THA_1079 PF00490 Delta-aminolevulinic acid dehydratase THA_108 PF02773 S-adenosylmethionine synthetase, C-terminal domain THA_108 PF02772 S-adenosylmethionine synthetase, central domain THA_108 PF00438 S-adenosylmethionine synthetase, N-terminal domain THA_1081 PF00202 Aminotransferase class-III THA_1082 PF01891 Cobalt uptake substrate-specific transmembrane region THA_1083 PF02553 Cobalt transport protein component CbiN THA_1085 PF00005 ABC transporter THA_109 PF01649 Ribosomal protein S20 THA_1090 PF02540 NAD synthase THA_1090 PF00117 Glutamine amidotransferase class-I THA_1090 PF00958 GMP synthase C terminal domain THA_1091 PF04011 LemA family THA_1093 PF00881 Nitroreductase family THA_1094 PF02574 Homocysteine S-methyltransferase THA_1094 PF02310 B12 binding domain THA_1094 PF00809 Pterin binding enzyme THA_1094 PF02607 B12 binding domain THA_1094 PF02965 Vitamin B12 dependent methionine synthase, activation domain THA_1096 PF02219 Methylenetetrahydrofolate reductase THA_1099 PF03447 Homoserine dehydrogenase, NAD binding domain THA_1099 PF00742 Homoserine dehydrogenase THA_1099 PF00696 Amino acid kinase family THA_1104 PF00696 Amino acid kinase family THA_1105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THA_1105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THA_1107 PF00665 Integrase core domain THA_1107 PF13276 HTH-like domain THA_1109 PF00563 EAL domain THA_1109 PF08448 PAS fold THA_1109 PF08447 PAS fold THA_1109 PF00990 Diguanylate cyclase, GGDEF domain THA_1110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_1113 PF00483 Nucleotidyl transferase THA_1116 PF13393 Histidyl-tRNA synthetase THA_1116 PF03129 Anticodon binding domain THA_1118 PF03553 Na+/H+ antiporter family THA_112 PF00665 Integrase core domain THA_112 PF13276 HTH-like domain THA_1121 PF00005 ABC transporter THA_1123 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded THA_1124 PF00849 RNA pseudouridylate synthase THA_1124 PF01479 S4 domain THA_1125 PF00809 Pterin binding enzyme THA_1126 PF12146 Serine aminopeptidase, S33 THA_1127 PF00266 Aminotransferase class-V THA_1128 PF00132 Bacterial transferase hexapeptide (six repeats) THA_1128 PF14602 Hexapeptide repeat of succinyl-transferase THA_1128 PF12804 MobA-like NTP transferase domain THA_1132 PF01139 tRNA-splicing ligase RtcB THA_1133 PF00005 ABC transporter THA_1133 PF12857 TOBE-like domain THA_1136 PF00756 Putative esterase THA_114 PF00270 DEAD/DEAH box helicase THA_114 PF01131 DNA topoisomerase THA_114 PF01751 Toprim domain THA_114 PF17915 Reverse gyrase zinc finger THA_1141 PF01594 AI-2E family transporter THA_1142 PF00710 Asparaginase, N-terminal THA_1142 PF17763 Glutaminase/Asparaginase C-terminal domain THA_1147 PF06470 SMC proteins Flexible Hinge Domain THA_1147 PF02463 RecF/RecN/SMC N terminal domain THA_1148 PF01225 Mur ligase family, catalytic domain THA_1148 PF02875 Mur ligase family, glutamate ligase domain THA_1148 PF08245 Mur ligase middle domain THA_1149 PF04101 Glycosyltransferase family 28 C-terminal domain THA_1149 PF03033 Glycosyltransferase family 28 N-terminal domain THA_115 PF06745 KaiC THA_1150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THA_1150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THA_1159 PF00672 HAMP domain THA_1159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_1159 PF02743 Cache domain THA_1160 PF01113 Dihydrodipicolinate reductase, N-terminus THA_1162 PF00291 Pyridoxal-phosphate dependent enzyme THA_1163 PF16552 D-ornithine 4,5-aminomutase alpha-subunit THA_1164 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase THA_1164 PF02310 B12 binding domain THA_1164 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit THA_1165 PF01026 TatD related DNase THA_1166 PF07499 RuvA, C-terminal domain THA_1166 PF01330 RuvA N terminal domain THA_1171 PF01119 DNA mismatch repair protein, C-terminal domain THA_1171 PF08676 MutL C terminal dimerisation domain THA_1173 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THA_1173 PF01411 tRNA synthetases class II (A) THA_1173 PF02272 DHHA1 domain THA_1175 PF01425 Amidase THA_1176 PF02637 GatB domain THA_1176 PF02934 GatB/GatE catalytic domain THA_1178 PF06969 HemN C-terminal domain THA_1178 PF04055 Radical SAM superfamily THA_1179 PF01098 Cell cycle protein THA_118 PF00512 His Kinase A (phospho-acceptor) domain THA_118 PF16736 Single Cache-like THA_118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_118 PF00989 PAS fold THA_1181 PF07726 ATPase family associated with various cellular activities (AAA) THA_1181 PF17863 AAA lid domain THA_1184 PF08439 Oligopeptidase F THA_1184 PF01432 Peptidase family M3 THA_1186 PF01416 tRNA pseudouridine synthase THA_1188 PF01728 FtsJ-like methyltransferase THA_1188 PF01479 S4 domain THA_119 PF00072 Response regulator receiver domain THA_119 PF00486 Transcriptional regulatory protein, C terminal THA_1190 PF02895 Signal transducing histidine kinase, homodimeric domain THA_1190 PF01584 CheW-like domain THA_1190 PF01627 Hpt domain THA_1190 PF07194 P2 response regulator binding domain THA_1190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_1191 PF01584 CheW-like domain THA_1192 PF00072 Response regulator receiver domain THA_1194 PF00813 FliP family THA_1195 PF01313 Bacterial export proteins, family 3 THA_1196 PF02223 Thymidylate kinase THA_1197 PF00318 Ribosomal protein S2 THA_1198 PF00453 Ribosomal protein L20 THA_1199 PF01632 Ribosomal protein L35 THA_120 PF01895 PhoU domain THA_1200 PF00707 Translation initiation factor IF-3, C-terminal domain THA_1200 PF05198 Translation initiation factor IF-3, N-terminal domain THA_1204 PF02887 Pyruvate kinase, alpha/beta domain THA_1204 PF00224 Pyruvate kinase, barrel domain THA_1207 PF00849 RNA pseudouridylate synthase THA_121 PF00005 ABC transporter THA_1210 PF00164 Ribosomal protein S12/S23 THA_1211 PF00177 Ribosomal protein S7p/S5e THA_1212 PF03144 Elongation factor Tu domain 2 THA_1212 PF00679 Elongation factor G C-terminus THA_1212 PF14492 Elongation Factor G, domain II THA_1212 PF03764 Elongation factor G, domain IV THA_1212 PF00009 Elongation factor Tu GTP binding domain THA_1213 PF00009 Elongation factor Tu GTP binding domain THA_1213 PF03144 Elongation factor Tu domain 2 THA_1213 PF03143 Elongation factor Tu C-terminal domain THA_1214 PF00338 Ribosomal protein S10p/S20e THA_1215 PF00297 Ribosomal protein L3 THA_1216 PF00573 Ribosomal protein L4/L1 family THA_1217 PF00276 Ribosomal protein L23 THA_1218 PF00181 Ribosomal Proteins L2, RNA binding domain THA_1218 PF03947 Ribosomal Proteins L2, C-terminal domain THA_1219 PF00203 Ribosomal protein S19 THA_122 PF00528 Binding-protein-dependent transport system inner membrane component THA_1220 PF00237 Ribosomal protein L22p/L17e THA_1221 PF07650 KH domain THA_1221 PF00189 Ribosomal protein S3, C-terminal domain THA_1222 PF00252 Ribosomal protein L16p/L10e THA_1223 PF00831 Ribosomal L29 protein THA_1224 PF00366 Ribosomal protein S17 THA_1225 PF00238 Ribosomal protein L14p/L23e THA_1226 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THA_1226 PF00467 KOW motif THA_1227 PF00673 ribosomal L5P family C-terminus THA_1227 PF00281 Ribosomal protein L5 THA_1228 PF00253 Ribosomal protein S14p/S29e THA_1229 PF00410 Ribosomal protein S8 THA_123 PF00528 Binding-protein-dependent transport system inner membrane component THA_1230 PF00347 Ribosomal protein L6 THA_1231 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THA_1232 PF00333 Ribosomal protein S5, N-terminal domain THA_1232 PF03719 Ribosomal protein S5, C-terminal domain THA_1233 PF00327 Ribosomal protein L30p/L7e THA_1234 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THA_1235 PF00344 SecY translocase THA_1236 PF05191 Adenylate kinase, active site lid THA_1237 PF00557 Metallopeptidase family M24 THA_1238 PF01176 Translation initiation factor 1A / IF-1 THA_1239 PF00416 Ribosomal protein S13/S18 THA_124 PF12849 PBP superfamily domain THA_1240 PF00411 Ribosomal protein S11 THA_1241 PF01479 S4 domain THA_1241 PF00163 Ribosomal protein S4/S9 N-terminal domain THA_1242 PF01000 RNA polymerase Rpb3/RpoA insert domain THA_1242 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THA_1242 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THA_1243 PF01196 Ribosomal protein L17 THA_1244 PF05698 Bacterial trigger factor protein (TF) C-terminus THA_1244 PF05697 Bacterial trigger factor protein (TF) THA_1245 PF00574 Clp protease THA_1246 PF01709 Transcriptional regulator THA_1248 PF01739 CheR methyltransferase, SAM binding domain THA_1248 PF03705 CheR methyltransferase, all-alpha domain THA_1249 PF01252 Signal peptidase (SPase) II THA_125 PF00171 Aldehyde dehydrogenase family THA_1250 PF01479 S4 domain THA_1250 PF00849 RNA pseudouridylate synthase THA_1251 PF03951 Glutamine synthetase, beta-Grasp domain THA_1251 PF00120 Glutamine synthetase, catalytic domain THA_1252 PF09827 CRISPR associated protein Cas2 THA_1253 PF01867 CRISPR associated protein Cas1 THA_1257 PF18395 Cas3 C-terminal domain THA_1257 PF18019 HD domain THA_1257 PF00270 DEAD/DEAH box helicase THA_126 PF01636 Phosphotransferase enzyme family THA_1262 PF03537 Glycoside-hydrolase family GH114 THA_1266 PF00534 Glycosyl transferases group 1 THA_1266 PF13439 Glycosyltransferase Family 4 THA_1267 PF00665 Integrase core domain THA_1267 PF13276 HTH-like domain THA_127 PF01047 MarR family THA_1272 PF00072 Response regulator receiver domain THA_1273 PF17248 Family of unknown function (DUF5317) THA_1274 PF00814 Glycoprotease family THA_1275 PF01624 MutS domain I THA_1275 PF00488 MutS domain V THA_1275 PF05192 MutS domain III THA_1275 PF05190 MutS family domain IV THA_1275 PF05188 MutS domain II THA_1278 PF00665 Integrase core domain THA_1278 PF13276 HTH-like domain THA_1279 PF00072 Response regulator receiver domain THA_1280 PF01871 AMMECR1 THA_1285 PF01171 PP-loop family THA_1286 PF03313 Serine dehydratase alpha chain THA_1288 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THA_1288 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THA_129 PF00294 pfkB family carbohydrate kinase THA_1291 PF00392 Bacterial regulatory proteins, gntR family THA_1292 PF04041 beta-1,4-mannooligosaccharide phosphorylase THA_1293 PF00528 Binding-protein-dependent transport system inner membrane component THA_1294 PF00528 Binding-protein-dependent transport system inner membrane component THA_1300 PF05233 PHB accumulation regulatory domain THA_1300 PF07879 PHB/PHA accumulation regulator DNA-binding domain THA_1304 PF01131 DNA topoisomerase THA_1304 PF01751 Toprim domain THA_1305 PF01966 HD domain THA_1306 PF00842 Alanine racemase, C-terminal domain THA_1306 PF01168 Alanine racemase, N-terminal domain THA_1307 PF00830 Ribosomal L28 family THA_1309 PF04539 Sigma-70 region 3 THA_1309 PF04542 Sigma-70 region 2 THA_1309 PF04545 Sigma-70, region 4 THA_1309 PF00140 Sigma-70 factor, region 1.2 THA_1309 PF03979 Sigma-70 factor, region 1.1 THA_131 PF02361 Cobalt transport protein THA_1310 PF01807 CHC2 zinc finger THA_1310 PF08275 DNA primase catalytic core, N-terminal domain THA_1311 PF00380 Ribosomal protein S9/S16 THA_1312 PF00572 Ribosomal protein L13 THA_1313 PF12822 ECF transporter, substrate-specific component THA_1314 PF01016 Ribosomal L27 protein THA_1315 PF04327 Cysteine protease Prp THA_1316 PF00829 Ribosomal prokaryotic L21 protein THA_1318 PF02075 Crossover junction endodeoxyribonuclease RuvC THA_1319 PF07733 Bacterial DNA polymerase III alpha NTPase domain THA_1319 PF00929 Exonuclease THA_1319 PF14579 Helix-hairpin-helix motif THA_1319 PF02811 PHP domain THA_1319 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THA_132 PF03030 Inorganic H+ pyrophosphatase THA_1320 PF04232 Stage V sporulation protein S (SpoVS) THA_1322 PF07136 Protein of unknown function (DUF1385) THA_1323 PF00005 ABC transporter THA_1324 PF11849 Domain of unknown function (DUF3369) THA_1325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THA_1325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THA_1326 PF01546 Peptidase family M20/M25/M40 THA_1326 PF07687 Peptidase dimerisation domain THA_1327 PF01409 tRNA synthetases class II core domain (F) THA_1327 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THA_1328 PF16198 tRNA pseudouridylate synthase B C-terminal domain THA_1328 PF01509 TruB family pseudouridylate synthase (N terminal domain) THA_1329 PF06071 Protein of unknown function (DUF933) THA_1329 PF01926 50S ribosome-binding GTPase THA_1330 PF04025 Domain of unknown function (DUF370) THA_1331 PF00919 Uncharacterized protein family UPF0004 THA_1331 PF01938 TRAM domain THA_1331 PF04055 Radical SAM superfamily THA_1332 PF00795 Carbon-nitrogen hydrolase THA_1333 PF02535 ZIP Zinc transporter THA_1334 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THA_1334 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THA_1335 PF13419 Haloacid dehalogenase-like hydrolase THA_1337 PF11849 Domain of unknown function (DUF3369) THA_1338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_1338 PF00512 His Kinase A (phospho-acceptor) domain THA_1338 PF18698 Histidine kinase sensor domain THA_1338 PF00672 HAMP domain THA_134 PF00072 Response regulator receiver domain THA_134 PF00486 Transcriptional regulatory protein, C terminal THA_1340 PF00497 Bacterial extracellular solute-binding proteins, family 3 THA_1341 PF00534 Glycosyl transferases group 1 THA_1341 PF00862 Sucrose synthase THA_1342 PF00294 pfkB family carbohydrate kinase THA_1343 PF01979 Amidohydrolase family THA_1344 PF04997 RNA polymerase Rpb1, domain 1 THA_1344 PF00623 RNA polymerase Rpb1, domain 2 THA_1344 PF04983 RNA polymerase Rpb1, domain 3 THA_1344 PF04998 RNA polymerase Rpb1, domain 5 THA_1344 PF05000 RNA polymerase Rpb1, domain 4 THA_1345 PF04560 RNA polymerase Rpb2, domain 7 THA_1345 PF10385 RNA polymerase beta subunit external 1 domain THA_1345 PF04565 RNA polymerase Rpb2, domain 3 THA_1345 PF00562 RNA polymerase Rpb2, domain 6 THA_1345 PF04563 RNA polymerase beta subunit THA_1346 PF16320 Ribosomal protein L7/L12 dimerisation domain THA_1346 PF00542 Ribosomal protein L7/L12 C-terminal domain THA_1347 PF00466 Ribosomal protein L10 THA_135 PF00512 His Kinase A (phospho-acceptor) domain THA_135 PF16736 Single Cache-like THA_135 PF00989 PAS fold THA_135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_1350 PF00700 Bacterial flagellin C-terminal helical region THA_1350 PF00669 Bacterial flagellin N-terminal helical region THA_1351 PF00535 Glycosyl transferase family 2 THA_1351 PF13181 Tetratricopeptide repeat THA_1352 PF01467 Cytidylyltransferase-like THA_1353 PF03796 DnaB-like helicase C terminal domain THA_1353 PF00772 DnaB-like helicase N terminal domain THA_1355 PF01042 Endoribonuclease L-PSP THA_1358 PF02142 MGS-like domain THA_136 PF02885 Glycosyl transferase family, helical bundle domain THA_136 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain THA_136 PF00591 Glycosyl transferase family, a/b domain THA_1362 PF01336 OB-fold nucleic acid binding domain THA_1362 PF00152 tRNA synthetases class II (D, K and N) THA_1363 PF02074 Carboxypeptidase Taq (M32) metallopeptidase THA_1366 PF02649 Type I GTP cyclohydrolase folE2 THA_1368 PF02767 DNA polymerase III beta subunit, central domain THA_1368 PF02768 DNA polymerase III beta subunit, C-terminal domain THA_1368 PF00712 DNA polymerase III beta subunit, N-terminal domain THA_1369 PF07963 Prokaryotic N-terminal methylation motif THA_1369 PF00114 Pilin (bacterial filament) THA_1370 PF00005 ABC transporter THA_1373 PF02424 ApbE family THA_1374 PF02575 YbaB/EbfC DNA-binding family THA_1378 PF01476 LysM domain THA_1378 PF03734 L,D-transpeptidase catalytic domain THA_1379 PF00106 short chain dehydrogenase THA_138 PF00156 Phosphoribosyl transferase domain THA_1380 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THA_1380 PF00128 Alpha amylase, catalytic domain THA_1382 PF02683 Cytochrome C biogenesis protein transmembrane region THA_1384 PF00462 Glutaredoxin THA_1385 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_1386 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_1386 PF13192 Thioredoxin domain THA_1388 PF00293 NUDIX domain THA_139 PF00342 Phosphoglucose isomerase THA_1390 PF02561 Flagellar protein FliS THA_1393 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_1393 PF00005 ABC transporter THA_1394 PF00005 ABC transporter THA_1394 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_1395 PF12911 N-terminal TM domain of oligopeptide transport permease C THA_1395 PF00528 Binding-protein-dependent transport system inner membrane component THA_1396 PF00528 Binding-protein-dependent transport system inner membrane component THA_1397 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THA_1399 PF00528 Binding-protein-dependent transport system inner membrane component THA_14 PF13683 Integrase core domain THA_14 PF13276 HTH-like domain THA_1400 PF00528 Binding-protein-dependent transport system inner membrane component THA_1401 PF08402 TOBE domain THA_1401 PF00005 ABC transporter THA_1402 PF13416 Bacterial extracellular solute-binding protein THA_1403 PF17284 Spermidine synthase tetramerisation domain THA_1404 PF02675 S-adenosylmethionine decarboxylase THA_1406 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THA_1406 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THA_1406 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THA_1406 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THA_1408 PF04474 Protein of unknown function (DUF554) THA_141 PF01121 Dephospho-CoA kinase THA_1410 PF02130 Uncharacterized protein family UPF0054 THA_1411 PF07697 7TM-HD extracellular THA_1411 PF01966 HD domain THA_1411 PF07698 7TM receptor with intracellular HD hydrolase THA_1412 PF02562 PhoH-like protein THA_1415 PF02310 B12 binding domain THA_1416 PF00364 Biotin-requiring enzyme THA_1418 PF01039 Carboxyl transferase domain THA_142 PF00990 Diguanylate cyclase, GGDEF domain THA_142 PF17155 Gammaproteobacterial periplasmic sensor domain THA_1422 PF07517 SecA DEAD-like domain THA_1422 PF07516 SecA Wing and Scaffold domain THA_1422 PF01043 SecA preprotein cross-linking domain THA_1423 PF03775 Septum formation inhibitor MinC, C-terminal domain THA_1425 PF00581 Rhodanese-like domain THA_1425 PF00899 ThiF family THA_1427 PF00149 Calcineurin-like phosphoesterase THA_1429 PF00460 Flagella basal body rod protein THA_143 PF00271 Helicase conserved C-terminal domain THA_143 PF04851 Type III restriction enzyme, res subunit THA_143 PF02151 UvrB/uvrC motif THA_143 PF12344 Ultra-violet resistance protein B THA_143 PF17757 UvrB interaction domain THA_1430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THA_1430 PF00460 Flagella basal body rod protein THA_1431 PF02049 Flagellar hook-basal body complex protein FliE THA_1432 PF00011 Hsp20/alpha crystallin family THA_1433 PF00012 Hsp70 protein THA_1434 PF01906 Putative heavy-metal-binding THA_1435 PF13026 Protein of unknown function (DUF3887) THA_1435 PF12146 Serine aminopeptidase, S33 THA_1436 PF13276 HTH-like domain THA_1436 PF00665 Integrase core domain THA_1439 PF00392 Bacterial regulatory proteins, gntR family THA_1440 PF02803 Thiolase, C-terminal domain THA_1440 PF00108 Thiolase, N-terminal domain THA_1441 PF01144 Coenzyme A transferase THA_1442 PF01144 Coenzyme A transferase THA_1443 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THA_1443 PF13247 4Fe-4S dicluster domain THA_1443 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_1444 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THA_1444 PF00175 Oxidoreductase NAD-binding domain THA_1444 PF00970 Oxidoreductase FAD-binding domain THA_1445 PF00294 pfkB family carbohydrate kinase THA_1446 PF00480 ROK family THA_145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THA_1450 PF00072 Response regulator receiver domain THA_1451 PF00072 Response regulator receiver domain THA_1451 PF01339 CheB methylesterase THA_1452 PF01584 CheW-like domain THA_1452 PF00072 Response regulator receiver domain THA_1452 PF01627 Hpt domain THA_1452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_1459 PF00919 Uncharacterized protein family UPF0004 THA_1459 PF18693 TRAM domain THA_1459 PF04055 Radical SAM superfamily THA_1460 PF01066 CDP-alcohol phosphatidyltransferase THA_1462 PF00154 recA bacterial DNA recombination protein THA_1463 PF02631 RecX family THA_1464 PF00013 KH domain THA_1464 PF12072 Domain of unknown function (DUF3552) THA_1464 PF01966 HD domain THA_1465 PF00155 Aminotransferase class I and II THA_1466 PF09186 Domain of unknown function (DUF1949) THA_1466 PF01205 Uncharacterized protein family UPF0029 THA_1467 PF12850 Calcineurin-like phosphoesterase superfamily domain THA_1468 PF04227 Indigoidine synthase A like protein THA_1470 PF01293 Phosphoenolpyruvate carboxykinase THA_1471 PF16904 Phosphoribosylformylglycinamidine synthase II C-terminus THA_1471 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THA_1471 PF02769 AIR synthase related protein, C-terminal domain THA_1471 PF00586 AIR synthase related protein, N-terminal domain THA_1473 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase THA_1474 PF01259 SAICAR synthetase THA_1475 PF00731 AIR carboxylase THA_1476 PF00291 Pyridoxal-phosphate dependent enzyme THA_1477 PF00132 Bacterial transferase hexapeptide (six repeats) THA_1478 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THA_1478 PF00056 lactate/malate dehydrogenase, NAD binding domain THA_1487 PF07690 Major Facilitator Superfamily THA_1488 PF12804 MobA-like NTP transferase domain THA_1488 PF00132 Bacterial transferase hexapeptide (six repeats) THA_1488 PF14602 Hexapeptide repeat of succinyl-transferase THA_1489 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain THA_1489 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain THA_149 PF05636 HIGH Nucleotidyl Transferase THA_1490 PF12146 Serine aminopeptidase, S33 THA_1492 PF00990 Diguanylate cyclase, GGDEF domain THA_1493 PF03009 Glycerophosphoryl diester phosphodiesterase family THA_1494 PF00155 Aminotransferase class I and II THA_1495 PF00107 Zinc-binding dehydrogenase THA_1495 PF08240 Alcohol dehydrogenase GroES-like domain THA_1499 PF01554 MatE THA_150 PF00270 DEAD/DEAH box helicase THA_150 PF00271 Helicase conserved C-terminal domain THA_150 PF17757 UvrB interaction domain THA_150 PF03461 TRCF domain THA_150 PF02559 CarD-like/TRCF domain THA_1501 PF00005 ABC transporter THA_1505 PF00206 Lyase THA_1505 PF10415 Fumarase C C-terminus THA_1510 PF00485 Phosphoribulokinase / Uridine kinase family THA_1511 PF01966 HD domain THA_1512 PF03309 Type III pantothenate kinase THA_1517 PF01177 Asp/Glu/Hydantoin racemase THA_1518 PF03668 P-loop ATPase protein family THA_1519 PF01933 Uncharacterised protein family UPF0052 THA_152 PF02457 DisA bacterial checkpoint controller nucleotide-binding THA_152 PF10635 DisA bacterial checkpoint controller linker region THA_152 PF00633 Helix-hairpin-helix motif THA_1520 PF02650 WhiA C-terminal HTH domain THA_1520 PF14527 WhiA LAGLIDADG-like domain THA_1521 PF03477 ATP cone domain THA_1522 PF01272 Transcription elongation factor, GreA/GreB, C-term THA_1522 PF03449 Transcription elongation factor, N-terminal THA_1523 PF00152 tRNA synthetases class II (D, K and N) THA_1523 PF01336 OB-fold nucleic acid binding domain THA_1525 PF01479 S4 domain THA_1527 PF00664 ABC transporter transmembrane region THA_1527 PF00005 ABC transporter THA_1529 PF00005 ABC transporter THA_1529 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_153 PF01174 SNO glutamine amidotransferase family THA_1530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_1530 PF00005 ABC transporter THA_1531 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THA_1532 PF00528 Binding-protein-dependent transport system inner membrane component THA_1533 PF00528 Binding-protein-dependent transport system inner membrane component THA_1533 PF12911 N-terminal TM domain of oligopeptide transport permease C THA_154 PF01680 SOR/SNZ family THA_1545 PF01545 Cation efflux family THA_1545 PF16916 Dimerisation domain of Zinc Transporter THA_1546 PF01022 Bacterial regulatory protein, arsR family THA_1547 PF00206 Lyase THA_1547 PF10397 Adenylosuccinate lyase C-terminus THA_1548 PF17912 MalK OB fold domain THA_1548 PF00005 ABC transporter THA_1548 PF03459 TOBE domain THA_155 PF01642 Methylmalonyl-CoA mutase THA_155 PF02310 B12 binding domain THA_1551 PF08362 YcdC-like protein, C-terminal region THA_1551 PF00440 Bacterial regulatory proteins, tetR family THA_1552 PF01197 Ribosomal protein L31 THA_1553 PF00575 S1 RNA binding domain THA_1553 PF03725 3' exoribonuclease family, domain 2 THA_1553 PF01138 3' exoribonuclease family, domain 1 THA_1553 PF00013 KH domain THA_1553 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THA_1554 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THA_1554 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THA_1554 PF00037 4Fe-4S binding domain THA_1556 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THA_1556 PF00037 4Fe-4S binding domain THA_1556 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THA_156 PF00596 Class II Aldolase and Adducin N-terminal domain THA_1560 PF02971 Formiminotransferase domain THA_1560 PF07837 Formiminotransferase domain, N-terminal subdomain THA_1561 PF00459 Inositol monophosphatase family THA_1562 PF00905 Penicillin binding protein transpeptidase domain THA_1562 PF03717 Penicillin-binding Protein dimerisation domain THA_1563 PF00749 tRNA synthetases class I (E and Q), catalytic domain THA_1565 PF01008 Initiation factor 2 subunit family THA_1567 PF09424 Yqey-like protein THA_1568 PF02502 Ribose/Galactose Isomerase THA_1569 PF01740 STAS domain THA_1570 PF01726 LexA DNA binding domain THA_1570 PF00717 Peptidase S24-like THA_1572 PF00521 DNA gyrase/topoisomerase IV, subunit A THA_1572 PF03989 DNA gyrase C-terminal domain, beta-propeller THA_1573 PF01588 Putative tRNA binding domain THA_1573 PF08264 Anticodon-binding domain of tRNA THA_1573 PF09334 tRNA synthetases class I (M) THA_1574 PF13416 Bacterial extracellular solute-binding protein THA_1575 PF00528 Binding-protein-dependent transport system inner membrane component THA_1576 PF00528 Binding-protein-dependent transport system inner membrane component THA_1577 PF00356 Bacterial regulatory proteins, lacI family THA_1578 PF16353 Domain of unknown function(DUF4981) THA_1578 PF02929 Beta galactosidase small chain THA_1578 PF02837 Glycosyl hydrolases family 2, sugar binding domain THA_1578 PF02836 Glycosyl hydrolases family 2, TIM barrel domain THA_1578 PF00703 Glycosyl hydrolases family 2 THA_158 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THA_1580 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain THA_1580 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain THA_1581 PF10509 Galactokinase galactose-binding signature THA_1581 PF08544 GHMP kinases C terminal THA_1581 PF00288 GHMP kinases N terminal domain THA_1582 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain THA_1582 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THA_1582 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain THA_1582 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THA_1583 PF00072 Response regulator receiver domain THA_1583 PF01966 HD domain THA_1584 PF01475 Ferric uptake regulator family THA_1585 PF10417 C-terminal domain of 1-Cys peroxiredoxin THA_1585 PF00578 AhpC/TSA family THA_1586 PF00301 Rubredoxin THA_1587 PF00301 Rubredoxin THA_1587 PF00753 Metallo-beta-lactamase superfamily THA_1587 PF00258 Flavodoxin THA_1588 PF00210 Ferritin-like domain THA_159 PF00682 HMGL-like THA_159 PF00364 Biotin-requiring enzyme THA_159 PF02436 Conserved carboxylase domain THA_1590 PF01880 Desulfoferrodoxin THA_1590 PF06397 Desulfoferrodoxin, N-terminal domain THA_1592 PF04972 BON domain THA_1592 PF00263 Bacterial type II and III secretion system protein THA_1592 PF13629 Pilus formation protein N terminal region THA_160 PF04760 Translation initiation factor IF-2, N-terminal region THA_160 PF00009 Elongation factor Tu GTP binding domain THA_160 PF11987 Translation-initiation factor 2 THA_1600 PF01242 6-pyruvoyl tetrahydropterin synthase THA_1604 PF00486 Transcriptional regulatory protein, C terminal THA_1604 PF00072 Response regulator receiver domain THA_1605 PF00162 Phosphoglycerate kinase THA_1605 PF00121 Triosephosphate isomerase THA_1606 PF00162 Phosphoglycerate kinase THA_1607 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THA_1607 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THA_1610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THA_1610 PF02874 ATP synthase alpha/beta family, beta-barrel domain THA_1610 PF18269 T3SS EscN ATPase C-terminal domain THA_1612 PF00871 Acetokinase family THA_1613 PF01116 Fructose-bisphosphate aldolase class-II THA_1615 PF02491 SHS2 domain inserted in FTSA THA_1616 PF00091 Tubulin/FtsZ family, GTPase domain THA_1616 PF12327 FtsZ family, C-terminal domain THA_1617 PF00437 Type II/IV secretion system protein THA_1619 PF01765 Ribosome recycling factor THA_162 PF00672 HAMP domain THA_162 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_162 PF02743 Cache domain THA_1620 PF01255 Putative undecaprenyl diphosphate synthase THA_1622 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THA_1622 PF01411 tRNA synthetases class II (A) THA_1622 PF02272 DHHA1 domain THA_1626 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THA_1627 PF02719 Polysaccharide biosynthesis protein THA_1630 PF00679 Elongation factor G C-terminus THA_1630 PF14492 Elongation Factor G, domain II THA_1630 PF00009 Elongation factor Tu GTP binding domain THA_1630 PF03764 Elongation factor G, domain IV THA_1633 PF13861 FlgD Tudor-like domain THA_1633 PF03963 Flagellar hook capping protein - N-terminal region THA_1633 PF13860 FlgD Ig-like domain THA_1634 PF07196 Flagellin hook IN motif THA_1634 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THA_1634 PF00460 Flagella basal body rod protein THA_1634 PF07559 Flagellar basal body protein FlaE THA_1635 PF06289 Flagellar and Swarming motility proteins THA_1636 PF01618 MotA/TolQ/ExbB proton channel family THA_1637 PF13677 Membrane MotB of proton-channel complex MotA/MotB THA_1637 PF00691 OmpA family THA_1639 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THA_1639 PF02154 Flagellar motor switch protein FliM THA_1640 PF04509 CheC-like family THA_1640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THA_1642 PF04079 Segregation and condensation complex subunit ScpB THA_1643 PF02616 Segregation and condensation protein ScpA THA_1644 PF00571 CBS domain THA_1644 PF01769 Divalent cation transporter THA_1644 PF03448 MgtE intracellular N domain THA_1646 PF02441 Flavoprotein THA_1646 PF04127 DNA / pantothenate metabolism flavoprotein THA_1647 PF02548 Ketopantoate hydroxymethyltransferase THA_1648 PF16123 Hydroxyacylglutathione hydrolase C-terminus THA_1648 PF00753 Metallo-beta-lactamase superfamily THA_1650 PF00005 ABC transporter THA_1653 PF13581 Histidine kinase-like ATPase domain THA_1654 PF02677 Epoxyqueuosine reductase QueH THA_1655 PF02580 D-Tyr-tRNA(Tyr) deacylase THA_1656 PF04607 Region found in RelA / SpoT proteins THA_1656 PF13291 ACT domain THA_1656 PF02824 TGS domain THA_1658 PF00082 Subtilase family THA_1659 PF00082 Subtilase family THA_1660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain THA_1660 PF01799 [2Fe-2S] binding domain THA_1660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase THA_1661 PF01799 [2Fe-2S] binding domain THA_1661 PF00111 2Fe-2S iron-sulfur cluster binding domain THA_1664 PF00111 2Fe-2S iron-sulfur cluster binding domain THA_1664 PF01799 [2Fe-2S] binding domain THA_1665 PF00291 Pyridoxal-phosphate dependent enzyme THA_1668 PF03129 Anticodon binding domain THA_1668 PF02824 TGS domain THA_1668 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THA_1668 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THA_1669 PF00072 Response regulator receiver domain THA_1669 PF01966 HD domain THA_1671 PF01145 SPFH domain / Band 7 family THA_1673 PF07670 Nucleoside recognition THA_1674 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THA_1674 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THA_1676 PF03808 Glycosyl transferase WecB/TagA/CpsF family THA_1677 PF02527 rRNA small subunit methyltransferase G THA_1678 PF12631 MnmE helical domain THA_1678 PF01926 50S ribosome-binding GTPase THA_1678 PF10396 GTP-binding protein TrmE N-terminus THA_1681 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THA_1681 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THA_1681 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THA_1683 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_1683 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THA_1684 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THA_1685 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THA_1686 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THA_1687 PF00146 NADH dehydrogenase THA_1689 PF00361 Proton-conducting membrane transporter THA_169 PF06826 Predicted Permease Membrane Region THA_169 PF02080 TrkA-C domain THA_1691 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THA_1692 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THA_1692 PF13244 Domain of unknown function (DUF4040) THA_1692 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THA_1692 PF00361 Proton-conducting membrane transporter THA_1695 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) THA_1696 PF01899 Na+/H+ ion antiporter subunit THA_1697 PF02629 CoA binding domain THA_1697 PF06971 Putative DNA-binding protein N-terminus THA_1699 PF00155 Aminotransferase class I and II THA_170 PF02774 Semialdehyde dehydrogenase, dimerisation domain THA_170 PF01118 Semialdehyde dehydrogenase, NAD binding domain THA_1701 PF02872 5'-nucleotidase, C-terminal domain THA_1701 PF00149 Calcineurin-like phosphoesterase THA_1702 PF00265 Thymidine kinase THA_1703 PF01966 HD domain THA_1703 PF00672 HAMP domain THA_1709 PF07498 Rho termination factor, N-terminal domain THA_1709 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THA_1709 PF07497 Rho termination factor, RNA-binding domain THA_171 PF01678 Diaminopimelate epimerase THA_1711 PF00472 RF-1 domain THA_1711 PF03462 PCRF domain THA_1712 PF00437 Type II/IV secretion system protein THA_1713 PF12169 DNA polymerase III subunits gamma and tau domain III THA_1717 PF01734 Patatin-like phospholipase THA_1718 PF01261 Xylose isomerase-like TIM barrel THA_172 PF00701 Dihydrodipicolinate synthetase family THA_1720 PF02540 NAD synthase THA_1720 PF00795 Carbon-nitrogen hydrolase THA_1724 PF01790 Prolipoprotein diacylglyceryl transferase THA_1725 PF01676 Metalloenzyme superfamily THA_1725 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase THA_1726 PF03772 Competence protein THA_1727 PF13184 NusA-like KH domain THA_1727 PF08529 NusA N-terminal domain THA_1727 PF00575 S1 RNA binding domain THA_1728 PF17384 RimP C-terminal SH3 domain THA_1728 PF02576 RimP N-terminal domain THA_173 PF05173 Dihydrodipicolinate reductase, C-terminus THA_173 PF01113 Dihydrodipicolinate reductase, N-terminus THA_1733 PF01702 Queuine tRNA-ribosyltransferase THA_1735 PF00156 Phosphoribosyl transferase domain THA_1736 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THA_1736 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THA_1736 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THA_1736 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THA_1737 PF01883 Iron-sulfur cluster assembly protein THA_1738 PF17827 PrmC N-terminal domain THA_1738 PF05175 Methyltransferase small domain THA_1739 PF01281 Ribosomal protein L9, N-terminal domain THA_1739 PF03948 Ribosomal protein L9, C-terminal domain THA_174 PF00132 Bacterial transferase hexapeptide (six repeats) THA_174 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal THA_174 PF14602 Hexapeptide repeat of succinyl-transferase THA_1742 PF12627 Probable RNA and SrmB- binding site of polymerase A THA_1742 PF01743 Poly A polymerase head domain THA_1742 PF01966 HD domain THA_1748 PF04542 Sigma-70 region 2 THA_1748 PF04545 Sigma-70, region 4 THA_1748 PF04539 Sigma-70 region 3 THA_1749 PF03975 CheD chemotactic sensory transduction THA_175 PF13840 ACT domain THA_175 PF00696 Amino acid kinase family THA_1750 PF04509 CheC-like family THA_1753 PF10609 NUBPL iron-transfer P-loop NTPase THA_1754 PF00448 SRP54-type protein, GTPase domain THA_1755 PF00771 FHIPEP family THA_176 PF00202 Aminotransferase class-III THA_1764 PF01594 AI-2E family transporter THA_1765 PF03819 MazG nucleotide pyrophosphohydrolase domain THA_1766 PF08032 RNA 2'-O ribose methyltransferase substrate binding THA_1766 PF00588 SpoU rRNA Methylase family THA_1767 PF00486 Transcriptional regulatory protein, C terminal THA_1767 PF00072 Response regulator receiver domain THA_1768 PF04298 Putative neutral zinc metallopeptidase THA_1769 PF01029 NusB family THA_1769 PF01189 16S rRNA methyltransferase RsmB/F THA_1770 PF08206 Ribonuclease B OB domain THA_1770 PF17876 Cold shock domain THA_1770 PF00575 S1 RNA binding domain THA_1770 PF00773 RNB domain THA_1772 PF12826 Helix-hairpin-helix motif THA_1772 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THA_1772 PF03120 NAD-dependent DNA ligase OB-fold domain THA_1772 PF01653 NAD-dependent DNA ligase adenylation domain THA_1772 PF00533 BRCA1 C Terminus (BRCT) domain THA_1774 PF02463 RecF/RecN/SMC N terminal domain THA_1775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THA_1776 PF00571 CBS domain THA_1776 PF03471 Transporter associated domain THA_1777 PF08497 Radical SAM N-terminal THA_1777 PF04055 Radical SAM superfamily THA_1777 PF11842 Domain of unknown function (DUF3362) THA_1778 PF03193 RsgA GTPase THA_1778 PF16745 RsgA N-terminal domain THA_178 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THA_1780 PF04055 Radical SAM superfamily THA_1781 PF02465 Flagellar hook-associated protein 2 N-terminus THA_1781 PF07196 Flagellin hook IN motif THA_1781 PF07195 Flagellar hook-associated protein 2 C-terminus THA_1783 PF02033 Ribosome-binding factor A THA_1784 PF08668 HDOD domain THA_1785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_1785 PF00512 His Kinase A (phospho-acceptor) domain THA_1785 PF16736 Single Cache-like THA_1785 PF00989 PAS fold THA_1786 PF00750 tRNA synthetases class I (R) THA_1786 PF03485 Arginyl tRNA synthetase N terminal domain THA_1786 PF05746 DALR anticodon binding domain THA_1787 PF01926 50S ribosome-binding GTPase THA_1788 PF00004 ATPase family associated with various cellular activities (AAA) THA_1788 PF05362 Lon protease (S16) C-terminal proteolytic domain THA_1788 PF02190 ATP-dependent protease La (LON) substrate-binding domain THA_1789 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THA_179 PF00795 Carbon-nitrogen hydrolase THA_1791 PF04468 PSP1 C-terminal conserved region THA_1792 PF02801 Beta-ketoacyl synthase, C-terminal domain THA_1792 PF00109 Beta-ketoacyl synthase, N-terminal domain THA_1793 PF07977 FabA-like domain THA_1794 PF03060 Nitronate monooxygenase THA_1795 PF02632 BioY family THA_1796 PF00698 Acyl transferase domain THA_1799 PF01964 Radical SAM ThiC family THA_1801 PF08543 Phosphomethylpyrimidine kinase THA_1801 PF10120 Thiamine-phosphate synthase THA_1802 PF00365 Phosphofructokinase THA_1803 PF01979 Amidohydrolase family THA_1803 PF13382 Adenine deaminase C-terminal domain THA_1804 PF06968 Biotin and Thiamin Synthesis associated domain THA_1804 PF04055 Radical SAM superfamily THA_1808 PF00037 4Fe-4S binding domain THA_1808 PF02256 Iron hydrogenase small subunit THA_1808 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THA_1808 PF02906 Iron only hydrogenase large subunit, C-terminal domain THA_181 PF01571 Aminomethyltransferase folate-binding domain THA_181 PF08669 Glycine cleavage T-protein C-terminal barrel domain THA_1811 PF00035 Double-stranded RNA binding motif THA_1811 PF14622 Ribonuclease-III-like THA_1812 PF00117 Glutamine amidotransferase class-I THA_1812 PF02540 NAD synthase THA_1812 PF00958 GMP synthase C terminal domain THA_1813 PF08279 HTH domain THA_1813 PF02237 Biotin protein ligase C terminal domain THA_1813 PF03099 Biotin/lipoate A/B protein ligase family THA_1814 PF03023 Lipid II flippase MurJ THA_1815 PF04060 Putative Fe-S cluster THA_1816 PF02481 DNA recombination-mediator protein A THA_1816 PF18255 DNA processing protein A sterile alpha motif domain THA_1817 PF02569 Pantoate-beta-alanine ligase THA_1818 PF13802 Galactose mutarotase-like THA_1818 PF17137 Domain of unknown function (DUF5110) THA_1818 PF01055 Glycosyl hydrolases family 31 THA_1818 PF16338 Domain of unknown function (DUF4968) THA_1819 PF00575 S1 RNA binding domain THA_1819 PF03725 3' exoribonuclease family, domain 2 THA_1819 PF00013 KH domain THA_1819 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THA_1819 PF01138 3' exoribonuclease family, domain 1 THA_182 PF02347 Glycine cleavage system P-protein THA_1820 PF05193 Peptidase M16 inactive domain THA_1820 PF00675 Insulinase (Peptidase family M16) THA_1821 PF01966 HD domain THA_1821 PF00072 Response regulator receiver domain THA_1822 PF10431 C-terminal, D2-small domain, of ClpB protein THA_1822 PF07724 AAA domain (Cdc48 subfamily) THA_1822 PF00004 ATPase family associated with various cellular activities (AAA) THA_1823 PF00528 Binding-protein-dependent transport system inner membrane component THA_1824 PF00528 Binding-protein-dependent transport system inner membrane component THA_1825 PF00923 Transaldolase/Fructose-6-phosphate aldolase THA_1826 PF00152 tRNA synthetases class II (D, K and N) THA_1826 PF02938 GAD domain THA_1826 PF01336 OB-fold nucleic acid binding domain THA_1827 PF01740 STAS domain THA_1828 PF02224 Cytidylate kinase THA_1829 PF00575 S1 RNA binding domain THA_1829 PF02401 LytB protein THA_183 PF02347 Glycine cleavage system P-protein THA_1830 PF01926 50S ribosome-binding GTPase THA_1830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THA_1831 PF02608 ABC transporter substrate-binding protein PnrA-like THA_1833 PF00072 Response regulator receiver domain THA_1833 PF01966 HD domain THA_1834 PF00468 Ribosomal protein L34 THA_1835 PF00825 Ribonuclease P THA_1836 PF02096 60Kd inner membrane protein THA_184 PF00465 Iron-containing alcohol dehydrogenase THA_1841 PF00120 Glutamine synthetase, catalytic domain THA_1841 PF03951 Glutamine synthetase, beta-Grasp domain THA_1842 PF00990 Diguanylate cyclase, GGDEF domain THA_1844 PF00270 DEAD/DEAH box helicase THA_1844 PF00570 HRDC domain THA_1844 PF00271 Helicase conserved C-terminal domain THA_1844 PF16124 RecQ zinc-binding THA_1844 PF09382 RQC domain THA_1847 PF00664 ABC transporter transmembrane region THA_1847 PF00005 ABC transporter THA_1849 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THA_185 PF17785 PUA-like domain THA_185 PF10672 S-adenosylmethionine-dependent methyltransferase THA_1857 PF14579 Helix-hairpin-helix motif THA_1857 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THA_1857 PF07733 Bacterial DNA polymerase III alpha NTPase domain THA_1858 PF00834 Ribulose-phosphate 3 epimerase family THA_1859 PF01048 Phosphorylase superfamily THA_1860 PF02272 DHHA1 domain THA_1860 PF01368 DHH family THA_1861 PF00990 Diguanylate cyclase, GGDEF domain THA_1861 PF17158 Membrane-associated sensor, integral membrane domain THA_1862 PF01565 FAD binding domain THA_1862 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THA_1863 PF02127 Aminopeptidase I zinc metalloprotease (M18) THA_1868 PF01238 Phosphomannose isomerase type I THA_187 PF00293 NUDIX domain THA_1870 PF00550 Phosphopantetheine attachment site THA_1871 PF17864 RuvB AAA lid domain THA_1871 PF05496 Holliday junction DNA helicase RuvB P-loop domain THA_1871 PF05491 RuvB C-terminal winged helix domain THA_1872 PF01168 Alanine racemase, N-terminal domain THA_1873 PF02325 YGGT family THA_1874 PF01513 ATP-NAD kinase THA_1875 PF01895 PhoU domain THA_1877 PF05958 tRNA (Uracil-5-)-methyltransferase THA_1878 PF02142 MGS-like domain THA_1878 PF01808 AICARFT/IMPCHase bienzyme THA_188 PF01546 Peptidase family M20/M25/M40 THA_188 PF07687 Peptidase dimerisation domain THA_1882 PF00472 RF-1 domain THA_1882 PF03462 PCRF domain THA_1883 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THA_1888 PF00448 SRP54-type protein, GTPase domain THA_1888 PF02881 SRP54-type protein, helical bundle domain THA_189 PF01175 Urocanase Rossmann-like domain THA_189 PF17392 Urocanase C-terminal domain THA_189 PF17391 Urocanase N-terminal domain THA_1890 PF06725 3D domain THA_1890 PF01476 LysM domain THA_1893 PF01171 PP-loop family THA_1893 PF11734 TilS substrate C-terminal domain THA_1893 PF00156 Phosphoribosyl transferase domain THA_1894 PF03816 Cell envelope-related transcriptional attenuator domain THA_1895 PF04493 Endonuclease V THA_1897 PF04055 Radical SAM superfamily THA_1897 PF16199 Radical_SAM C-terminal domain THA_1898 PF01979 Amidohydrolase family THA_190 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THA_190 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THA_190 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THA_1900 PF08245 Mur ligase middle domain THA_1900 PF02875 Mur ligase family, glutamate ligase domain THA_1901 PF08264 Anticodon-binding domain of tRNA THA_1901 PF10458 Valyl tRNA synthetase tRNA binding arm THA_1901 PF00133 tRNA synthetases class I (I, L, M and V) THA_1903 PF10531 SLBB domain THA_1903 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THA_1903 PF13375 RnfC Barrel sandwich hybrid domain THA_1903 PF13237 4Fe-4S dicluster domain THA_1904 PF03116 NQR2, RnfD, RnfE family THA_1906 PF02508 Rnf-Nqr subunit, membrane protein THA_1907 PF02508 Rnf-Nqr subunit, membrane protein THA_1909 PF03600 Citrate transporter THA_1910 PF01699 Sodium/calcium exchanger protein THA_1912 PF00571 CBS domain THA_1912 PF00478 IMP dehydrogenase / GMP reductase domain THA_1915 PF00128 Alpha amylase, catalytic domain THA_1916 PF08241 Methyltransferase domain THA_1918 PF03600 Citrate transporter THA_1919 PF03063 Prismane/CO dehydrogenase family THA_192 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit THA_1920 PF01958 Domain of unknown function DUF108 THA_1920 PF03447 Homoserine dehydrogenase, NAD binding domain THA_1921 PF02445 Quinolinate synthetase A protein THA_1922 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THA_1922 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THA_1924 PF05230 MASE2 domain THA_1924 PF00990 Diguanylate cyclase, GGDEF domain THA_1926 PF00232 Glycosyl hydrolase family 1 THA_1927 PF01925 Sulfite exporter TauE/SafE THA_1929 PF01546 Peptidase family M20/M25/M40 THA_1932 PF00528 Binding-protein-dependent transport system inner membrane component THA_1933 PF00528 Binding-protein-dependent transport system inner membrane component THA_1936 PF00528 Binding-protein-dependent transport system inner membrane component THA_1937 PF00528 Binding-protein-dependent transport system inner membrane component THA_1939 PF00356 Bacterial regulatory proteins, lacI family THA_194 PF00005 ABC transporter THA_1940 PF00248 Aldo/keto reductase family THA_1944 PF13378 Enolase C-terminal domain-like THA_1944 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain THA_1946 PF00027 Cyclic nucleotide-binding domain THA_1946 PF13545 Crp-like helix-turn-helix domain THA_1947 PF01470 Pyroglutamyl peptidase THA_1948 PF00291 Pyridoxal-phosphate dependent enzyme THA_1954 PF09827 CRISPR associated protein Cas2 THA_1955 PF01867 CRISPR associated protein Cas1 THA_196 PF00365 Phosphofructokinase THA_1962 PF03073 TspO/MBR family THA_1966 PF00356 Bacterial regulatory proteins, lacI family THA_1967 PF00528 Binding-protein-dependent transport system inner membrane component THA_1968 PF00528 Binding-protein-dependent transport system inner membrane component THA_197 PF03030 Inorganic H+ pyrophosphatase THA_1970 PF11975 Family 4 glycosyl hydrolase C-terminal domain THA_1970 PF02056 Family 4 glycosyl hydrolase THA_1973 PF01022 Bacterial regulatory protein, arsR family THA_1974 PF01758 Sodium Bile acid symporter family THA_1976 PF00106 short chain dehydrogenase THA_1978 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THA_198 PF07549 SecD/SecF GG Motif THA_198 PF02355 Protein export membrane protein THA_1983 PF00665 Integrase core domain THA_1983 PF13276 HTH-like domain THA_1986 PF00528 Binding-protein-dependent transport system inner membrane component THA_1987 PF00528 Binding-protein-dependent transport system inner membrane component THA_1988 PF17912 MalK OB fold domain THA_1988 PF03459 TOBE domain THA_1988 PF00005 ABC transporter THA_1989 PF00534 Glycosyl transferases group 1 THA_199 PF02355 Protein export membrane protein THA_199 PF07549 SecD/SecF GG Motif THA_1990 PF01418 Helix-turn-helix domain, rpiR family THA_1990 PF01380 SIS domain THA_1994 PF03073 TspO/MBR family THA_20 PF01925 Sulfite exporter TauE/SafE THA_200 PF02699 Preprotein translocase subunit THA_2000 PF01555 DNA methylase THA_2001 PF02371 Transposase IS116/IS110/IS902 family THA_2001 PF01548 Transposase THA_2004 PF07282 Putative transposase DNA-binding domain THA_2004 PF01385 Probable transposase THA_2004 PF12323 Helix-turn-helix domain THA_2006 PF07282 Putative transposase DNA-binding domain THA_2006 PF12323 Helix-turn-helix domain THA_2006 PF01385 Probable transposase THA_2007 PF13276 HTH-like domain THA_2007 PF00665 Integrase core domain THA_2007 PF13333 Integrase core domain THA_201 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THA_201 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THA_2012 PF00665 Integrase core domain THA_2012 PF13276 HTH-like domain THA_2012 PF13333 Integrase core domain THA_2015 PF12323 Helix-turn-helix domain THA_2015 PF01385 Probable transposase THA_2015 PF07282 Putative transposase DNA-binding domain THA_2016 PF00665 Integrase core domain THA_2016 PF13276 HTH-like domain THA_2016 PF13333 Integrase core domain THA_2017 PF01548 Transposase THA_2017 PF02371 Transposase IS116/IS110/IS902 family THA_2018 PF00665 Integrase core domain THA_2018 PF13333 Integrase core domain THA_2018 PF13276 HTH-like domain THA_2019 PF01548 Transposase THA_2019 PF02371 Transposase IS116/IS110/IS902 family THA_2022 PF13333 Integrase core domain THA_2022 PF00665 Integrase core domain THA_2022 PF13276 HTH-like domain THA_2024 PF01548 Transposase THA_2024 PF02371 Transposase IS116/IS110/IS902 family THA_2026 PF12323 Helix-turn-helix domain THA_2026 PF01385 Probable transposase THA_2026 PF07282 Putative transposase DNA-binding domain THA_203 PF02511 Thymidylate synthase complementing protein THA_2031 PF13276 HTH-like domain THA_2031 PF00665 Integrase core domain THA_2031 PF13333 Integrase core domain THA_2033 PF13333 Integrase core domain THA_2033 PF00665 Integrase core domain THA_2033 PF13276 HTH-like domain THA_2038 PF01548 Transposase THA_2038 PF02371 Transposase IS116/IS110/IS902 family THA_204 PF01351 Ribonuclease HII THA_2040 PF13333 Integrase core domain THA_2040 PF13276 HTH-like domain THA_2040 PF00665 Integrase core domain THA_2041 PF01548 Transposase THA_2041 PF02371 Transposase IS116/IS110/IS902 family THA_2042 PF01548 Transposase THA_2042 PF02371 Transposase IS116/IS110/IS902 family THA_207 PF02146 Sir2 family THA_210 PF02601 Exonuclease VII, large subunit THA_210 PF13742 OB-fold nucleic acid binding domain THA_211 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THA_211 PF01367 5'-3' exonuclease, C-terminal SAM fold THA_211 PF00476 DNA polymerase family A THA_211 PF01612 3'-5' exonuclease THA_213 PF02491 SHS2 domain inserted in FTSA THA_214 PF00488 MutS domain V THA_214 PF01713 Smr domain THA_216 PF01384 Phosphate transporter family THA_22 PF03717 Penicillin-binding Protein dimerisation domain THA_22 PF00905 Penicillin binding protein transpeptidase domain THA_220 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THA_221 PF02954 Bacterial regulatory protein, Fis family THA_221 PF00158 Sigma-54 interaction domain THA_221 PF00072 Response regulator receiver domain THA_222 PF01515 Phosphate acetyl/butaryl transferase THA_224 PF08299 Bacterial dnaA protein helix-turn-helix THA_224 PF11638 DnaA N-terminal domain THA_224 PF00308 Bacterial dnaA protein THA_227 PF02608 ABC transporter substrate-binding protein PnrA-like THA_234 PF02592 Putative vitamin uptake transporter THA_235 PF02645 Uncharacterised protein, DegV family COG1307 THA_236 PF02645 Uncharacterised protein, DegV family COG1307 THA_237 PF18073 Rubredoxin metal binding domain THA_238 PF00004 ATPase family associated with various cellular activities (AAA) THA_238 PF07724 AAA domain (Cdc48 subfamily) THA_238 PF10431 C-terminal, D2-small domain, of ClpB protein THA_238 PF02861 Clp amino terminal domain, pathogenicity island component THA_238 PF17871 AAA lid domain THA_24 PF01795 MraW methylase family THA_243 PF01263 Aldose 1-epimerase THA_244 PF01212 Beta-eliminating lyase THA_247 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_248 PF00857 Isochorismatase family THA_249 PF06968 Biotin and Thiamin Synthesis associated domain THA_249 PF04055 Radical SAM superfamily THA_25 PF01979 Amidohydrolase family THA_250 PF00271 Helicase conserved C-terminal domain THA_250 PF17191 RecG wedge domain THA_250 PF00270 DEAD/DEAH box helicase THA_251 PF00005 ABC transporter THA_252 PF04263 Thiamin pyrophosphokinase, catalytic domain THA_252 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain THA_253 PF13288 DXP reductoisomerase C-terminal domain THA_253 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain THA_253 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase THA_254 PF01497 Periplasmic binding protein THA_255 PF01032 FecCD transport family THA_256 PF13419 Haloacid dehalogenase-like hydrolase THA_257 PF04545 Sigma-70, region 4 THA_257 PF04539 Sigma-70 region 3 THA_257 PF00140 Sigma-70 factor, region 1.2 THA_257 PF03979 Sigma-70 factor, region 1.1 THA_257 PF04542 Sigma-70 region 2 THA_259 PF00885 6,7-dimethyl-8-ribityllumazine synthase THA_26 PF00291 Pyridoxal-phosphate dependent enzyme THA_260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THA_260 PF00925 GTP cyclohydrolase II THA_261 PF00677 Lumazine binding domain THA_262 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THA_262 PF01872 RibD C-terminal domain THA_263 PF00672 HAMP domain THA_263 PF02743 Cache domain THA_263 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_264 PF01592 NifU-like N terminal domain THA_265 PF00266 Aminotransferase class-V THA_266 PF01458 Uncharacterized protein family (UPF0051) THA_267 PF01458 Uncharacterized protein family (UPF0051) THA_268 PF00005 ABC transporter THA_269 PF00118 TCP-1/cpn60 chaperonin family THA_27 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain THA_27 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase THA_270 PF00166 Chaperonin 10 Kd subunit THA_272 PF00636 Ribonuclease III domain THA_274 PF01523 Putative modulator of DNA gyrase THA_275 PF01523 Putative modulator of DNA gyrase THA_276 PF01168 Alanine racemase, N-terminal domain THA_278 PF02547 Queuosine biosynthesis protein THA_279 PF00312 Ribosomal protein S15 THA_28 PF13382 Adenine deaminase C-terminal domain THA_28 PF01979 Amidohydrolase family THA_280 PF04073 Aminoacyl-tRNA editing domain THA_280 PF03129 Anticodon binding domain THA_280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THA_281 PF09190 DALR domain THA_281 PF01406 tRNA synthetases class I (C) catalytic domain THA_282 PF00749 tRNA synthetases class I (E and Q), catalytic domain THA_283 PF00860 Permease family THA_288 PF00919 Uncharacterized protein family UPF0004 THA_288 PF04055 Radical SAM superfamily THA_288 PF01938 TRAM domain THA_289 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) THA_289 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 THA_29 PF00669 Bacterial flagellin N-terminal helical region THA_29 PF00700 Bacterial flagellin C-terminal helical region THA_290 PF00857 Isochorismatase family THA_291 PF16916 Dimerisation domain of Zinc Transporter THA_291 PF01545 Cation efflux family THA_294 PF00534 Glycosyl transferases group 1 THA_294 PF08323 Starch synthase catalytic domain THA_296 PF00158 Sigma-54 interaction domain THA_296 PF00989 PAS fold THA_296 PF02954 Bacterial regulatory protein, Fis family THA_297 PF01894 Uncharacterised protein family UPF0047 THA_298 PF01820 D-ala D-ala ligase N-terminus THA_298 PF07478 D-ala D-ala ligase C-terminus THA_30 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_30 PF00005 ABC transporter THA_300 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain THA_300 PF02558 Ketopantoate reductase PanE/ApbA THA_301 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THA_301 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THA_302 PF13660 Domain of unknown function (DUF4147) THA_302 PF05161 MOFRL family THA_303 PF02540 NAD synthase THA_304 PF00226 DnaJ domain THA_304 PF01556 DnaJ C terminal domain THA_304 PF00684 DnaJ central domain THA_305 PF01025 GrpE THA_306 PF01628 HrcA protein C terminal domain THA_307 PF07690 Major Facilitator Superfamily THA_308 PF08279 HTH domain THA_308 PF02829 3H domain THA_31 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_31 PF00005 ABC transporter THA_321 PF09827 CRISPR associated protein Cas2 THA_322 PF01867 CRISPR associated protein Cas1 THA_323 PF09827 CRISPR associated protein Cas2 THA_325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THA_327 PF13186 Iron-sulfur cluster-binding domain THA_327 PF04055 Radical SAM superfamily THA_328 PF05343 M42 glutamyl aminopeptidase THA_33 PF00528 Binding-protein-dependent transport system inner membrane component THA_330 PF01192 RNA polymerase Rpb6 THA_331 PF00625 Guanylate kinase THA_332 PF04025 Domain of unknown function (DUF370) THA_337 PF12838 4Fe-4S dicluster domain THA_339 PF00871 Acetokinase family THA_34 PF01541 GIY-YIG catalytic domain THA_34 PF02151 UvrB/uvrC motif THA_34 PF08459 UvrC Helix-hairpin-helix N-terminal THA_340 PF01515 Phosphate acetyl/butaryl transferase THA_341 PF00871 Acetokinase family THA_342 PF00155 Aminotransferase class I and II THA_344 PF00266 Aminotransferase class-V THA_345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THA_345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THA_347 PF01546 Peptidase family M20/M25/M40 THA_347 PF07687 Peptidase dimerisation domain THA_348 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THA_348 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THA_349 PF01979 Amidohydrolase family THA_350 PF01979 Amidohydrolase family THA_351 PF01180 Dihydroorotate dehydrogenase THA_357 PF04232 Stage V sporulation protein S (SpoVS) THA_358 PF02872 5'-nucleotidase, C-terminal domain THA_358 PF00149 Calcineurin-like phosphoesterase THA_359 PF00005 ABC transporter THA_359 PF00664 ABC transporter transmembrane region THA_36 PF01597 Glycine cleavage H-protein THA_363 PF02577 Bifunctional nuclease THA_364 PF00501 AMP-binding enzyme THA_364 PF01553 Acyltransferase THA_365 PF02926 THUMP domain THA_365 PF02568 Thiamine biosynthesis protein (ThiI) THA_366 PF03239 Iron permease FTR1 family THA_369 PF00403 Heavy-metal-associated domain THA_370 PF02583 Metal-sensitive transcriptional repressor THA_371 PF00664 ABC transporter transmembrane region THA_371 PF00005 ABC transporter THA_372 PF00664 ABC transporter transmembrane region THA_372 PF00005 ABC transporter THA_374 PF00465 Iron-containing alcohol dehydrogenase THA_375 PF13276 HTH-like domain THA_375 PF00665 Integrase core domain THA_38 PF07670 Nucleoside recognition THA_38 PF17910 FeoB cytosolic helical domain THA_38 PF07664 Ferrous iron transport protein B C terminus THA_38 PF04023 FeoA domain THA_38 PF02421 Ferrous iron transport protein B THA_380 PF08439 Oligopeptidase F THA_380 PF01432 Peptidase family M3 THA_381 PF01554 MatE THA_383 PF00248 Aldo/keto reductase family THA_384 PF02073 Thermophilic metalloprotease (M29) THA_386 PF00005 ABC transporter THA_388 PF16193 AAA C-terminal domain THA_388 PF01661 Macro domain THA_388 PF12002 MgsA AAA+ ATPase C terminal THA_388 PF05496 Holliday junction DNA helicase RuvB P-loop domain THA_389 PF12002 MgsA AAA+ ATPase C terminal THA_389 PF01661 Macro domain THA_389 PF05496 Holliday junction DNA helicase RuvB P-loop domain THA_389 PF16193 AAA C-terminal domain THA_390 PF16363 GDP-mannose 4,6 dehydratase THA_392 PF03167 Uracil DNA glycosylase superfamily THA_393 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THA_393 PF00391 PEP-utilising enzyme, mobile domain THA_393 PF02896 PEP-utilising enzyme, TIM barrel domain THA_395 PF12804 MobA-like NTP transferase domain THA_395 PF00132 Bacterial transferase hexapeptide (six repeats) THA_395 PF14602 Hexapeptide repeat of succinyl-transferase THA_396 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THA_396 PF14572 Phosphoribosyl synthetase-associated domain THA_397 PF14693 Ribosomal protein TL5, C-terminal domain THA_397 PF01386 Ribosomal L25p family THA_398 PF01195 Peptidyl-tRNA hydrolase THA_4 PF00271 Helicase conserved C-terminal domain THA_4 PF00270 DEAD/DEAH box helicase THA_403 PF17760 UvrA interaction domain THA_403 PF17755 UvrA DNA-binding domain THA_403 PF00005 ABC transporter THA_404 PF00589 Phage integrase family THA_404 PF02899 Phage integrase, N-terminal SAM-like domain THA_405 PF03952 Enolase, N-terminal domain THA_405 PF00113 Enolase, C-terminal TIM barrel domain THA_407 PF00395 S-layer homology domain THA_408 PF00579 tRNA synthetases class I (W and Y) THA_408 PF01479 S4 domain THA_41 PF10531 SLBB domain THA_410 PF04055 Radical SAM superfamily THA_410 PF00919 Uncharacterized protein family UPF0004 THA_411 PF01170 Putative RNA methylase family UPF0020 THA_411 PF02926 THUMP domain THA_412 PF02641 Uncharacterized ACR, COG1993 THA_413 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THA_415 PF01725 Ham1 family THA_416 PF02590 Predicted SPOUT methyltransferase THA_419 PF01551 Peptidase family M23 THA_419 PF04225 Opacity-associated protein A LysM-like domain THA_42 PF01875 Memo-like protein THA_421 PF03061 Thioesterase superfamily THA_422 PF05853 beta-keto acid cleavage enzyme THA_424 PF04055 Radical SAM superfamily THA_424 PF12544 Lysine-2,3-aminomutase THA_425 PF01575 MaoC like domain THA_427 PF05192 MutS domain III THA_427 PF01624 MutS domain I THA_427 PF05188 MutS domain II THA_427 PF05190 MutS family domain IV THA_427 PF00488 MutS domain V THA_428 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit THA_429 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase THA_429 PF02310 B12 binding domain THA_43 PF00263 Bacterial type II and III secretion system protein THA_43 PF03958 Bacterial type II/III secretion system short domain THA_431 PF00005 ABC transporter THA_431 PF12704 MacB-like periplasmic core domain THA_431 PF02687 FtsX-like permease family THA_432 PF00005 ABC transporter THA_438 PF04055 Radical SAM superfamily THA_438 PF00919 Uncharacterized protein family UPF0004 THA_438 PF18693 TRAM domain THA_440 PF01434 Peptidase family M41 THA_440 PF17862 AAA+ lid domain THA_440 PF00004 ATPase family associated with various cellular activities (AAA) THA_441 PF11734 TilS substrate C-terminal domain THA_441 PF01171 PP-loop family THA_444 PF02673 Bacitracin resistance protein BacA THA_445 PF01979 Amidohydrolase family THA_448 PF02545 Maf-like protein THA_449 PF04002 RadC-like JAB domain THA_452 PF00535 Glycosyl transferase family 2 THA_453 PF00535 Glycosyl transferase family 2 THA_458 PF03572 Peptidase family S41 THA_458 PF13180 PDZ domain THA_459 PF01209 ubiE/COQ5 methyltransferase family THA_462 PF01966 HD domain THA_464 PF00227 Proteasome subunit THA_465 PF01300 Telomere recombination THA_465 PF03481 Putative GTP-binding controlling metal-binding THA_467 PF06421 GTP-binding protein LepA C-terminus THA_467 PF00679 Elongation factor G C-terminus THA_467 PF03144 Elongation factor Tu domain 2 THA_467 PF00009 Elongation factor Tu GTP binding domain THA_468 PF02875 Mur ligase family, glutamate ligase domain THA_468 PF08245 Mur ligase middle domain THA_469 PF01134 Glucose inhibited division protein A THA_470 PF00551 Formyl transferase THA_470 PF02911 Formyl transferase, C-terminal domain THA_471 PF00398 Ribosomal RNA adenine dimethylase THA_473 PF02542 YgbB family THA_475 PF00483 Nucleotidyl transferase THA_475 PF00132 Bacterial transferase hexapeptide (six repeats) THA_476 PF00483 Nucleotidyl transferase THA_477 PF01791 DeoC/LacD family aldolase THA_478 PF01668 SmpB protein THA_479 PF02686 Glu-tRNAGln amidotransferase C subunit THA_480 PF02599 Global regulator protein family THA_481 PF02623 FliW protein THA_484 PF13684 Dihydroxyacetone kinase family THA_484 PF02734 DAK2 domain THA_486 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THA_486 PF02779 Transketolase, pyrimidine binding domain THA_486 PF02780 Transketolase, C-terminal domain THA_487 PF02403 Seryl-tRNA synthetase N-terminal domain THA_487 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THA_488 PF01008 Initiation factor 2 subunit family THA_489 PF00245 Alkaline phosphatase THA_49 PF00482 Type II secretion system (T2SS), protein F THA_491 PF08264 Anticodon-binding domain of tRNA THA_491 PF00133 tRNA synthetases class I (I, L, M and V) THA_491 PF13603 Leucyl-tRNA synthetase, Domain 2 THA_491 PF09334 tRNA synthetases class I (M) THA_492 PF04452 RNA methyltransferase THA_495 PF13276 HTH-like domain THA_495 PF00665 Integrase core domain THA_497 PF17868 AAA lid domain THA_497 PF12592 Protein of unknown function (DUF3763) THA_497 PF07728 AAA domain (dynein-related subfamily) THA_499 PF00665 Integrase core domain THA_499 PF13276 HTH-like domain THA_50 PF00005 ABC transporter THA_501 PF02163 Peptidase family M50 THA_501 PF17820 PDZ domain THA_502 PF00072 Response regulator receiver domain THA_502 PF00990 Diguanylate cyclase, GGDEF domain THA_503 PF13276 HTH-like domain THA_503 PF00665 Integrase core domain THA_504 PF00072 Response regulator receiver domain THA_506 PF04551 GcpE protein THA_509 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THA_51 PF05175 Methyltransferase small domain THA_510 PF01180 Dihydroorotate dehydrogenase THA_511 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THA_512 PF00156 Phosphoribosyl transferase domain THA_514 PF16921 Tex protein YqgF-like domain THA_514 PF00575 S1 RNA binding domain THA_514 PF09371 Tex-like protein N-terminal domain THA_514 PF17674 HHH domain THA_515 PF01584 CheW-like domain THA_516 PF04851 Type III restriction enzyme, res subunit THA_516 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THA_516 PF18074 Primosomal protein N C-terminal domain THA_516 PF17764 3′ DNA-binding domain (3′BD) THA_518 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THA_519 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THA_519 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THA_52 PF01613 Flavin reductase like domain THA_521 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THA_522 PF03065 Glycosyl hydrolase family 57 THA_522 PF09210 Domain of unknown function (DUF1957) THA_524 PF03313 Serine dehydratase alpha chain THA_525 PF03315 Serine dehydratase beta chain THA_527 PF01966 HD domain THA_527 PF00072 Response regulator receiver domain THA_53 PF02779 Transketolase, pyrimidine binding domain THA_53 PF00456 Transketolase, thiamine diphosphate binding domain THA_53 PF02780 Transketolase, C-terminal domain THA_530 PF11849 Domain of unknown function (DUF3369) THA_531 PF00211 Adenylate and Guanylate cyclase catalytic domain THA_533 PF00700 Bacterial flagellin C-terminal helical region THA_533 PF00669 Bacterial flagellin N-terminal helical region THA_533 PF07196 Flagellin hook IN motif THA_534 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THA_534 PF00460 Flagella basal body rod protein THA_534 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THA_534 PF00460 Flagella basal body rod protein THA_537 PF00672 HAMP domain THA_537 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_537 PF02743 Cache domain THA_538 PF00924 Mechanosensitive ion channel THA_539 PF00579 tRNA synthetases class I (W and Y) THA_540 PF05362 Lon protease (S16) C-terminal proteolytic domain THA_540 PF13654 AAA domain THA_541 PF00288 GHMP kinases N terminal domain THA_543 PF13941 MutL protein THA_544 PF12706 Beta-lactamase superfamily domain THA_546 PF00709 Adenylosuccinate synthetase THA_547 PF01230 HIT domain THA_549 PF00550 Phosphopantetheine attachment site THA_55 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THA_55 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_550 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THA_550 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain THA_553 PF00665 Integrase core domain THA_553 PF13276 HTH-like domain THA_555 PF01268 Formate--tetrahydrofolate ligase THA_556 PF00512 His Kinase A (phospho-acceptor) domain THA_556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_556 PF18698 Histidine kinase sensor domain THA_556 PF00672 HAMP domain THA_556 PF00989 PAS fold THA_557 PF01430 Hsp33 protein THA_559 PF02272 DHHA1 domain THA_559 PF17768 RecJ OB domain THA_559 PF10141 Single-strand DNA-specific exonuclease, C terminal domain THA_559 PF01368 DHH family THA_560 PF03652 Holliday junction resolvase THA_562 PF01321 Creatinase/Prolidase N-terminal domain THA_562 PF00557 Metallopeptidase family M24 THA_565 PF00119 ATP synthase A chain THA_566 PF00137 ATP synthase subunit C THA_567 PF00430 ATP synthase B/B' CF(0) THA_568 PF00213 ATP synthase delta (OSCP) subunit THA_569 PF00306 ATP synthase alpha/beta chain, C terminal domain THA_569 PF02874 ATP synthase alpha/beta family, beta-barrel domain THA_569 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THA_570 PF00231 ATP synthase THA_571 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THA_571 PF02874 ATP synthase alpha/beta family, beta-barrel domain THA_572 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THA_573 PF02645 Uncharacterised protein, DegV family COG1307 THA_575 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus THA_575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THA_576 PF00512 His Kinase A (phospho-acceptor) domain THA_576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_576 PF00989 PAS fold THA_576 PF13188 PAS domain THA_576 PF13426 PAS domain THA_577 PF02261 Aspartate decarboxylase THA_58 PF10502 Signal peptidase, peptidase S26 THA_580 PF03099 Biotin/lipoate A/B protein ligase family THA_581 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THA_582 PF00313 'Cold-shock' DNA-binding domain THA_584 PF00953 Glycosyl transferase family 4 THA_588 PF06574 FAD synthetase THA_588 PF01687 Riboflavin kinase THA_589 PF10576 Iron-sulfur binding domain of endonuclease III THA_589 PF00730 HhH-GPD superfamily base excision DNA repair protein THA_589 PF00633 Helix-hairpin-helix motif THA_59 PF01245 Ribosomal protein L19 THA_590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THA_592 PF00860 Permease family THA_595 PF17191 RecG wedge domain THA_595 PF13749 Putative ATP-dependent DNA helicase recG C-terminal THA_595 PF00270 DEAD/DEAH box helicase THA_6 PF00176 SNF2 family N-terminal domain THA_6 PF12419 SNF2 Helicase protein THA_6 PF00271 Helicase conserved C-terminal domain THA_60 PF09936 SAM-dependent RNA methyltransferase THA_600 PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system THA_61 PF01746 tRNA (Guanine-1)-methyltransferase THA_610 PF00356 Bacterial regulatory proteins, lacI family THA_611 PF02554 Carbon starvation protein CstA THA_611 PF13722 5TM C-terminal transporter carbon starvation CstA THA_612 PF04397 LytTr DNA-binding domain THA_612 PF00072 Response regulator receiver domain THA_613 PF07694 5TMR of 5TMR-LYT THA_613 PF06580 Histidine kinase THA_615 PF00528 Binding-protein-dependent transport system inner membrane component THA_616 PF00528 Binding-protein-dependent transport system inner membrane component THA_617 PF13416 Bacterial extracellular solute-binding protein THA_618 PF07703 Alpha-2-macroglobulin bait region domain THA_618 PF01835 MG2 domain THA_618 PF07678 A-macroglobulin TED domain THA_618 PF00207 Alpha-2-macroglobulin family THA_618 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain THA_62 PF05239 PRC-barrel domain THA_62 PF01782 RimM N-terminal domain THA_620 PF06672 Protein of unknown function (DUF1175) THA_621 PF00326 Prolyl oligopeptidase family THA_621 PF07676 WD40-like Beta Propeller Repeat THA_622 PF00209 Sodium:neurotransmitter symporter family THA_623 PF00990 Diguanylate cyclase, GGDEF domain THA_624 PF00186 Dihydrofolate reductase THA_626 PF00563 EAL domain THA_626 PF00990 Diguanylate cyclase, GGDEF domain THA_626 PF13426 PAS domain THA_630 PF00687 Ribosomal protein L1p/L10e family THA_631 PF03946 Ribosomal protein L11, N-terminal domain THA_631 PF00298 Ribosomal protein L11, RNA binding domain THA_632 PF02357 Transcription termination factor nusG THA_632 PF18298 NusG additional domain THA_632 PF00467 KOW motif THA_633 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THA_637 PF01084 Ribosomal protein S18 THA_638 PF00436 Single-strand binding protein family THA_639 PF01250 Ribosomal protein S6 THA_64 PF00886 Ribosomal protein S16 THA_642 PF01098 Cell cycle protein THA_644 PF02091 Glycyl-tRNA synthetase alpha subunit THA_645 PF05746 DALR anticodon binding domain THA_645 PF02092 Glycyl-tRNA synthetase beta subunit THA_646 PF02915 Rubrerythrin THA_647 PF12221 Bacterial membrane protein N terminal THA_647 PF01145 SPFH domain / Band 7 family THA_648 PF01145 SPFH domain / Band 7 family THA_649 PF00571 CBS domain THA_649 PF00478 IMP dehydrogenase / GMP reductase domain THA_65 PF00448 SRP54-type protein, GTPase domain THA_65 PF02978 Signal peptide binding domain THA_65 PF02881 SRP54-type protein, helical bundle domain THA_650 PF00814 Glycoprotease family THA_651 PF06689 ClpX C4-type zinc finger THA_651 PF10431 C-terminal, D2-small domain, of ClpB protein THA_651 PF07724 AAA domain (Cdc48 subfamily) THA_655 PF00005 ABC transporter THA_658 PF00990 Diguanylate cyclase, GGDEF domain THA_658 PF17155 Gammaproteobacterial periplasmic sensor domain THA_659 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_659 PF04324 BFD-like [2Fe-2S] binding domain THA_66 PF01547 Bacterial extracellular solute-binding protein THA_660 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_660 PF04324 BFD-like [2Fe-2S] binding domain THA_662 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THA_662 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THA_663 PF04309 Glycerol-3-phosphate responsive antiterminator THA_666 PF00565 Staphylococcal nuclease homologue THA_669 PF05025 RbsD / FucU transport protein family THA_670 PF00005 ABC transporter THA_671 PF02653 Branched-chain amino acid transport system / permease component THA_672 PF13407 Periplasmic binding protein domain THA_673 PF00356 Bacterial regulatory proteins, lacI family THA_674 PF00294 pfkB family carbohydrate kinase THA_675 PF00317 Ribonucleotide reductase, all-alpha domain THA_675 PF02867 Ribonucleotide reductase, barrel domain THA_675 PF03477 ATP cone domain THA_676 PF04055 Radical SAM superfamily THA_677 PF13597 Anaerobic ribonucleoside-triphosphate reductase THA_677 PF03477 ATP cone domain THA_68 PF00528 Binding-protein-dependent transport system inner membrane component THA_681 PF00005 ABC transporter THA_682 PF01458 Uncharacterized protein family (UPF0051) THA_685 PF01979 Amidohydrolase family THA_686 PF07724 AAA domain (Cdc48 subfamily) THA_686 PF00004 ATPase family associated with various cellular activities (AAA) THA_686 PF17871 AAA lid domain THA_686 PF10431 C-terminal, D2-small domain, of ClpB protein THA_686 PF02861 Clp amino terminal domain, pathogenicity island component THA_687 PF01547 Bacterial extracellular solute-binding protein THA_688 PF14785 Maltose transport system permease protein MalF P2 domain THA_688 PF00528 Binding-protein-dependent transport system inner membrane component THA_689 PF00528 Binding-protein-dependent transport system inner membrane component THA_694 PF00970 Oxidoreductase FAD-binding domain THA_694 PF00111 2Fe-2S iron-sulfur cluster binding domain THA_694 PF00175 Oxidoreductase NAD-binding domain THA_695 PF02508 Rnf-Nqr subunit, membrane protein THA_696 PF02508 Rnf-Nqr subunit, membrane protein THA_697 PF04205 FMN-binding domain THA_698 PF03116 NQR2, RnfD, RnfE family THA_70 PF00343 Carbohydrate phosphorylase THA_701 PF01625 Peptide methionine sulfoxide reductase THA_702 PF00535 Glycosyl transferase family 2 THA_703 PF02660 Glycerol-3-phosphate acyltransferase THA_706 PF01593 Flavin containing amine oxidoreductase THA_71 PF13180 PDZ domain THA_71 PF17820 PDZ domain THA_710 PF17158 Membrane-associated sensor, integral membrane domain THA_710 PF00990 Diguanylate cyclase, GGDEF domain THA_711 PF17871 AAA lid domain THA_711 PF07724 AAA domain (Cdc48 subfamily) THA_711 PF02861 Clp amino terminal domain, pathogenicity island component THA_711 PF00004 ATPase family associated with various cellular activities (AAA) THA_711 PF10431 C-terminal, D2-small domain, of ClpB protein THA_712 PF00578 AhpC/TSA family THA_715 PF00849 RNA pseudouridylate synthase THA_715 PF01479 S4 domain THA_716 PF16363 GDP-mannose 4,6 dehydratase THA_717 PF13361 UvrD-like helicase C-terminal domain THA_717 PF12705 PD-(D/E)XK nuclease superfamily THA_717 PF00580 UvrD/REP helicase N-terminal domain THA_722 PF00216 Bacterial DNA-binding protein THA_723 PF01202 Shikimate kinase THA_724 PF01894 Uncharacterised protein family UPF0047 THA_726 PF01297 Zinc-uptake complex component A periplasmic THA_727 PF00005 ABC transporter THA_728 PF00950 ABC 3 transport family THA_73 PF01478 Type IV leader peptidase family THA_73 PF06750 Bacterial Peptidase A24 N-terminal domain THA_730 PF02770 Acyl-CoA dehydrogenase, middle domain THA_730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain THA_730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain THA_731 PF01012 Electron transfer flavoprotein domain THA_732 PF00766 Electron transfer flavoprotein FAD-binding domain THA_732 PF01012 Electron transfer flavoprotein domain THA_736 PF00156 Phosphoribosyl transferase domain THA_737 PF00551 Formyl transferase THA_738 PF02142 MGS-like domain THA_738 PF01808 AICARFT/IMPCHase bienzyme THA_739 PF02844 Phosphoribosylglycinamide synthetase, N domain THA_739 PF02843 Phosphoribosylglycinamide synthetase, C domain THA_739 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THA_740 PF00586 AIR synthase related protein, N-terminal domain THA_740 PF02769 AIR synthase related protein, C-terminal domain THA_742 PF00534 Glycosyl transferases group 1 THA_742 PF13439 Glycosyltransferase Family 4 THA_746 PF13439 Glycosyltransferase Family 4 THA_746 PF00534 Glycosyl transferases group 1 THA_75 PF01256 Carbohydrate kinase THA_75 PF03853 YjeF-related protein N-terminus THA_752 PF00005 ABC transporter THA_757 PF01926 50S ribosome-binding GTPase THA_757 PF01018 GTP1/OBG THA_757 PF09269 Domain of unknown function (DUF1967) THA_758 PF01467 Cytidylyltransferase-like THA_759 PF01207 Dihydrouridine synthase (Dus) THA_761 PF00155 Aminotransferase class I and II THA_762 PF04029 2-phosphosulpholactate phosphatase THA_765 PF00905 Penicillin binding protein transpeptidase domain THA_765 PF00912 Transglycosylase THA_768 PF00665 Integrase core domain THA_768 PF13276 HTH-like domain THA_77 PF02390 Putative methyltransferase THA_770 PF00528 Binding-protein-dependent transport system inner membrane component THA_772 PF00005 ABC transporter THA_772 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_773 PF00005 ABC transporter THA_773 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THA_774 PF04041 beta-1,4-mannooligosaccharide phosphorylase THA_775 PF00232 Glycosyl hydrolase family 1 THA_776 PF00356 Bacterial regulatory proteins, lacI family THA_778 PF00334 Nucleoside diphosphate kinase THA_78 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THA_78 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THA_780 PF09967 VWA-like domain (DUF2201) THA_780 PF13203 Putative metallopeptidase domain THA_786 PF00037 4Fe-4S binding domain THA_786 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THA_786 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THA_787 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THA_787 PF00037 4Fe-4S binding domain THA_787 PF02256 Iron hydrogenase small subunit THA_787 PF02906 Iron only hydrogenase large subunit, C-terminal domain THA_788 PF06971 Putative DNA-binding protein N-terminus THA_788 PF02629 CoA binding domain THA_790 PF02875 Mur ligase family, glutamate ligase domain THA_790 PF01225 Mur ligase family, catalytic domain THA_790 PF08245 Mur ligase middle domain THA_792 PF01820 D-ala D-ala ligase N-terminus THA_792 PF07478 D-ala D-ala ligase C-terminus THA_793 PF01048 Phosphorylase superfamily THA_794 PF13690 Chemotaxis phosphatase CheX THA_795 PF01926 50S ribosome-binding GTPase THA_796 PF00696 Amino acid kinase family THA_799 PF02562 PhoH-like protein THA_799 PF13638 PIN domain THA_800 PF07733 Bacterial DNA polymerase III alpha NTPase domain THA_800 PF14480 DNA polymerase III polC-type N-terminus I THA_800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THA_800 PF14579 Helix-hairpin-helix motif THA_800 PF02811 PHP domain THA_800 PF00929 Exonuclease THA_800 PF11490 DNA polymerase III polC-type N-terminus II THA_801 PF01706 FliG C-terminal domain THA_801 PF14841 FliG middle domain THA_801 PF14842 FliG N-terminal domain THA_802 PF08345 Flagellar M-ring protein C-terminal THA_802 PF01514 Secretory protein of YscJ/FliF family THA_805 PF01783 Ribosomal L32p protein family THA_806 PF02504 Fatty acid synthesis protein THA_807 PF01380 SIS domain THA_808 PF00675 Insulinase (Peptidase family M16) THA_808 PF05193 Peptidase M16 inactive domain THA_809 PF00675 Insulinase (Peptidase family M16) THA_809 PF05193 Peptidase M16 inactive domain THA_810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THA_810 PF00460 Flagella basal body rod protein THA_811 PF00460 Flagella basal body rod protein THA_811 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THA_814 PF03116 NQR2, RnfD, RnfE family THA_815 PF00293 NUDIX domain THA_818 PF13276 HTH-like domain THA_818 PF00665 Integrase core domain THA_822 PF00664 ABC transporter transmembrane region THA_822 PF00005 ABC transporter THA_824 PF03063 Prismane/CO dehydrogenase family THA_825 PF00245 Alkaline phosphatase THA_826 PF03796 DnaB-like helicase C terminal domain THA_826 PF00772 DnaB-like helicase N terminal domain THA_827 PF01467 Cytidylyltransferase-like THA_83 PF05343 M42 glutamyl aminopeptidase THA_830 PF00892 EamA-like transporter family THA_833 PF08264 Anticodon-binding domain of tRNA THA_833 PF00133 tRNA synthetases class I (I, L, M and V) THA_833 PF06827 Zinc finger found in FPG and IleRS THA_834 PF00486 Transcriptional regulatory protein, C terminal THA_834 PF00072 Response regulator receiver domain THA_835 PF03714 Bacterial pullanase-associated domain THA_835 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THA_835 PF00128 Alpha amylase, catalytic domain THA_836 PF11896 Domain of unknown function (DUF3416) THA_836 PF00128 Alpha amylase, catalytic domain THA_837 PF08360 QacR-like protein, C-terminal region THA_837 PF00440 Bacterial regulatory proteins, tetR family THA_841 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_841 PF13426 PAS domain THA_841 PF08447 PAS fold THA_843 PF00534 Glycosyl transferases group 1 THA_844 PF01547 Bacterial extracellular solute-binding protein THA_845 PF00528 Binding-protein-dependent transport system inner membrane component THA_846 PF00528 Binding-protein-dependent transport system inner membrane component THA_847 PF01425 Amidase THA_856 PF03787 RAMP superfamily THA_862 PF08378 Nuclease-related domain THA_863 PF00132 Bacterial transferase hexapeptide (six repeats) THA_864 PF00535 Glycosyl transferase family 2 THA_867 PF16363 GDP-mannose 4,6 dehydratase THA_868 PF00132 Bacterial transferase hexapeptide (six repeats) THA_869 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THA_870 PF00483 Nucleotidyl transferase THA_873 PF10531 SLBB domain THA_873 PF02563 Polysaccharide biosynthesis/export protein THA_881 PF00534 Glycosyl transferases group 1 THA_881 PF13439 Glycosyltransferase Family 4 THA_882 PF13276 HTH-like domain THA_882 PF00665 Integrase core domain THA_883 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THA_883 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THA_883 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THA_886 PF13439 Glycosyltransferase Family 4 THA_886 PF00534 Glycosyl transferases group 1 THA_889 PF02397 Bacterial sugar transferase THA_896 PF00483 Nucleotidyl transferase THA_896 PF01050 Mannose-6-phosphate isomerase THA_899 PF08245 Mur ligase middle domain THA_899 PF02875 Mur ligase family, glutamate ligase domain THA_899 PF01225 Mur ligase family, catalytic domain THA_90 PF01923 Cobalamin adenosyltransferase THA_901 PF00953 Glycosyl transferase family 4 THA_902 PF00953 Glycosyl transferase family 4 THA_903 PF08011 PD-(D/E)XK nuclease superfamily THA_903 PF09820 Predicted AAA-ATPase THA_904 PF08011 PD-(D/E)XK nuclease superfamily THA_904 PF09820 Predicted AAA-ATPase THA_905 PF08011 PD-(D/E)XK nuclease superfamily THA_905 PF09820 Predicted AAA-ATPase THA_906 PF09820 Predicted AAA-ATPase THA_906 PF08011 PD-(D/E)XK nuclease superfamily THA_908 PF02119 Flagellar P-ring protein THA_909 PF02107 Flagellar L-ring protein THA_91 PF00221 Aromatic amino acid lyase THA_911 PF00204 DNA gyrase B THA_911 PF00986 DNA gyrase B subunit, carboxyl terminus THA_911 PF01751 Toprim domain THA_911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THA_913 PF01063 Amino-transferase class IV THA_914 PF04055 Radical SAM superfamily THA_914 PF00919 Uncharacterized protein family UPF0004 THA_915 PF00571 CBS domain THA_915 PF00478 IMP dehydrogenase / GMP reductase domain THA_916 PF00294 pfkB family carbohydrate kinase THA_917 PF00005 ABC transporter THA_92 PF00672 HAMP domain THA_92 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_92 PF02743 Cache domain THA_926 PF00361 Proton-conducting membrane transporter THA_927 PF00365 Phosphofructokinase THA_928 PF00465 Iron-containing alcohol dehydrogenase THA_93 PF00395 S-layer homology domain THA_930 PF07650 KH domain THA_930 PF01926 50S ribosome-binding GTPase THA_931 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THA_931 PF03147 Ferredoxin-fold anticodon binding domain THA_931 PF01588 Putative tRNA binding domain THA_931 PF03484 tRNA synthetase B5 domain THA_931 PF03483 B3/4 domain THA_935 PF02660 Glycerol-3-phosphate acyltransferase THA_937 PF02350 UDP-N-acetylglucosamine 2-epimerase THA_94 PF01339 CheB methylesterase THA_94 PF00072 Response regulator receiver domain THA_940 PF00528 Binding-protein-dependent transport system inner membrane component THA_941 PF00528 Binding-protein-dependent transport system inner membrane component THA_942 PF03060 Nitronate monooxygenase THA_944 PF00990 Diguanylate cyclase, GGDEF domain THA_944 PF08448 PAS fold THA_945 PF13932 GidA associated domain THA_945 PF01134 Glucose inhibited division protein A THA_946 PF02463 RecF/RecN/SMC N terminal domain THA_948 PF01865 Protein of unknown function DUF47 THA_949 PF00128 Alpha amylase, catalytic domain THA_950 PF01384 Phosphate transporter family THA_951 PF01384 Phosphate transporter family THA_954 PF03600 Citrate transporter THA_955 PF01926 50S ribosome-binding GTPase THA_955 PF01018 GTP1/OBG THA_956 PF06130 Phosphate propanoyltransferase THA_957 PF01048 Phosphorylase superfamily THA_958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_959 PF01311 Bacterial export proteins, family 1 THA_960 PF01312 FlhB HrpN YscU SpaS Family THA_962 PF01029 NusB family THA_964 PF08207 Elongation factor P (EF-P) KOW-like domain THA_964 PF09285 Elongation factor P, C-terminal THA_964 PF01132 Elongation factor P (EF-P) OB domain THA_965 PF00672 HAMP domain THA_965 PF07228 Stage II sporulation protein E (SpoIIE) THA_966 PF00072 Response regulator receiver domain THA_966 PF00486 Transcriptional regulatory protein, C terminal THA_969 PF12399 Branched-chain amino acid ATP-binding cassette transporter THA_969 PF00005 ABC transporter THA_97 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THA_971 PF00270 DEAD/DEAH box helicase THA_971 PF00271 Helicase conserved C-terminal domain THA_972 PF01327 Polypeptide deformylase THA_973 PF01975 Survival protein SurE THA_975 PF10609 NUBPL iron-transfer P-loop NTPase THA_977 PF12848 ABC transporter THA_977 PF16326 ABC transporter C-terminal domain THA_977 PF00005 ABC transporter THA_978 PF01554 MatE THA_98 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THA_982 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THA_982 PF07992 Pyridine nucleotide-disulphide oxidoreductase THA_984 PF01209 ubiE/COQ5 methyltransferase family THA_985 PF00665 Integrase core domain THA_985 PF13276 HTH-like domain THA_987 PF08011 PD-(D/E)XK nuclease superfamily THA_987 PF09820 Predicted AAA-ATPase THA_989 PF00672 HAMP domain THA_989 PF16591 Helical bimodular sensor domain THA_989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THA_99 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THA_99 PF05221 S-adenosyl-L-homocysteine hydrolase THA_991 PF00889 Elongation factor TS THA_992 PF02811 PHP domain THA_993 PF06418 CTP synthase N-terminus THA_993 PF00117 Glutamine amidotransferase class-I THA_994 PF00994 Probable molybdopterin binding domain THA_994 PF02464 Competence-damaged protein THA_994 PF18146 Damage-inducible protein CinA KH domain THA_995 PF00356 Bacterial regulatory proteins, lacI family THA_998 PF13361 UvrD-like helicase C-terminal domain THA_998 PF00580 UvrD/REP helicase N-terminal domain