locus-tag class description JYK00_00005 PF00308 Bacterial dnaA protein JYK00_00005 PF08299 Bacterial dnaA protein helix-turn-helix JYK00_00005 PF11638 DnaA N-terminal domain JYK00_00015 PF00171 Aldehyde dehydrogenase family JYK00_00025 PF02608 ABC transporter substrate-binding protein PnrA-like JYK00_00030 PF00005 ABC transporter JYK00_00035 PF02653 Branched-chain amino acid transport system / permease component JYK00_00040 PF02653 Branched-chain amino acid transport system / permease component JYK00_00050 PF00708 Acylphosphatase JYK00_00080 PF04232 Stage V sporulation protein S (SpoVS) JYK00_00085 PF02872 5'-nucleotidase, C-terminal domain JYK00_00085 PF00149 Calcineurin-like phosphoesterase JYK00_00090 PF00005 ABC transporter JYK00_00090 PF00664 ABC transporter transmembrane region JYK00_00110 PF02577 Bifunctional nuclease JYK00_00120 PF02568 Thiamine biosynthesis protein (ThiI) JYK00_00120 PF02926 THUMP domain JYK00_00135 PF02508 Rnf-Nqr subunit, membrane protein JYK00_00140 PF02508 Rnf-Nqr subunit, membrane protein JYK00_00150 PF03116 NQR2, RnfD, RnfE family JYK00_00155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JYK00_00155 PF13237 4Fe-4S dicluster domain JYK00_00155 PF13375 RnfC Barrel sandwich hybrid domain JYK00_00155 PF10531 SLBB domain JYK00_00165 PF08264 Anticodon-binding domain of tRNA JYK00_00165 PF00133 tRNA synthetases class I (I, L, M and V) JYK00_00165 PF10458 Valyl tRNA synthetase tRNA binding arm JYK00_00170 PF08245 Mur ligase middle domain JYK00_00170 PF02875 Mur ligase family, glutamate ligase domain JYK00_00180 PF01979 Amidohydrolase family JYK00_00185 PF04055 Radical SAM superfamily JYK00_00185 PF16199 Radical_SAM C-terminal domain JYK00_00195 PF09820 Predicted AAA-ATPase JYK00_00195 PF08011 PD-(D/E)XK nuclease superfamily JYK00_00200 PF00005 ABC transporter JYK00_00215 PF04055 Radical SAM superfamily JYK00_00215 PF13186 Iron-sulfur cluster-binding domain JYK00_00240 PF01471 Putative peptidoglycan binding domain JYK00_00240 PF17820 PDZ domain JYK00_00240 PF03572 Peptidase family S41 JYK00_00245 PF12826 Helix-hairpin-helix motif JYK00_00245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JYK00_00245 PF03120 NAD-dependent DNA ligase OB-fold domain JYK00_00245 PF00533 BRCA1 C Terminus (BRCT) domain JYK00_00245 PF01653 NAD-dependent DNA ligase adenylation domain JYK00_00260 PF13476 AAA domain JYK00_00265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JYK00_00270 PF00571 CBS domain JYK00_00270 PF03471 Transporter associated domain JYK00_00280 PF16745 RsgA N-terminal domain JYK00_00280 PF03193 RsgA GTPase JYK00_00290 PF04055 Radical SAM superfamily JYK00_00295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JYK00_00300 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_00305 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_00305 PF12911 N-terminal TM domain of oligopeptide transport permease C JYK00_00310 PF00005 ABC transporter JYK00_00310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_00315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_00315 PF00005 ABC transporter JYK00_00325 PF00072 Response regulator receiver domain JYK00_00345 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_00350 PF01012 Electron transfer flavoprotein domain JYK00_00350 PF00766 Electron transfer flavoprotein FAD-binding domain JYK00_00355 PF01012 Electron transfer flavoprotein domain JYK00_00360 PF01578 Cytochrome C assembly protein JYK00_00365 PF05140 ResB-like family JYK00_00370 PF03264 NapC/NirT cytochrome c family, N-terminal region JYK00_00380 PF00753 Metallo-beta-lactamase superfamily JYK00_00380 PF12706 Beta-lactamase superfamily domain JYK00_00390 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_00390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JYK00_00395 PF01883 Iron-sulfur cluster assembly protein JYK00_00395 PF10609 NUBPL iron-transfer P-loop NTPase JYK00_00415 PF00265 Thymidine kinase JYK00_00420 PF02872 5'-nucleotidase, C-terminal domain JYK00_00420 PF00149 Calcineurin-like phosphoesterase JYK00_00430 PF06971 Putative DNA-binding protein N-terminus JYK00_00430 PF02629 CoA binding domain JYK00_00435 PF01899 Na+/H+ ion antiporter subunit JYK00_00440 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JYK00_00455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JYK00_00455 PF00361 Proton-conducting membrane transporter JYK00_00455 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JYK00_00455 PF13244 Domain of unknown function (DUF4040) JYK00_00460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JYK00_00465 PF00361 Proton-conducting membrane transporter JYK00_00470 PF13244 Domain of unknown function (DUF4040) JYK00_00470 PF00361 Proton-conducting membrane transporter JYK00_00470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JYK00_00475 PF00146 NADH dehydrogenase JYK00_00480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JYK00_00485 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JYK00_00485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JYK00_00490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JYK00_00495 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JYK00_00495 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JYK00_00495 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_00515 PF01381 Helix-turn-helix JYK00_00525 PF00005 ABC transporter JYK00_00525 PF13732 Domain of unknown function (DUF4162) JYK00_00535 PF00440 Bacterial regulatory proteins, tetR family JYK00_00535 PF16295 Tetracyclin repressor-like, C-terminal domain JYK00_00545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JYK00_00545 PF00056 lactate/malate dehydrogenase, NAD binding domain JYK00_00560 PF05636 HIGH Nucleotidyl Transferase JYK00_00565 PF17757 UvrB interaction domain JYK00_00565 PF02559 CarD-like/TRCF domain JYK00_00565 PF00270 DEAD/DEAH box helicase JYK00_00565 PF00271 Helicase conserved C-terminal domain JYK00_00565 PF03461 TRCF domain JYK00_00575 PF02457 DisA bacterial checkpoint controller nucleotide-binding JYK00_00575 PF10635 DisA bacterial checkpoint controller linker region JYK00_00575 PF00633 Helix-hairpin-helix motif JYK00_00585 PF00128 Alpha amylase, catalytic domain JYK00_00585 PF02806 Alpha amylase, C-terminal all-beta domain JYK00_00585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JYK00_00605 PF00128 Alpha amylase, catalytic domain JYK00_00625 PF01609 Transposase DDE domain JYK00_00655 PF13302 Acetyltransferase (GNAT) domain JYK00_00660 PF00005 ABC transporter JYK00_00670 PF02768 DNA polymerase III beta subunit, C-terminal domain JYK00_00670 PF00712 DNA polymerase III beta subunit, N-terminal domain JYK00_00670 PF02767 DNA polymerase III beta subunit, central domain JYK00_00675 PF00294 pfkB family carbohydrate kinase JYK00_00680 PF00534 Glycosyl transferases group 1 JYK00_00680 PF00862 Sucrose synthase JYK00_00690 PF02649 Type I GTP cyclohydrolase folE2 JYK00_00705 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JYK00_00715 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JYK00_00715 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JYK00_00720 PF00288 GHMP kinases N terminal domain JYK00_00720 PF10509 Galactokinase galactose-binding signature JYK00_00720 PF08544 GHMP kinases C terminal JYK00_00725 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JYK00_00725 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JYK00_00730 PF00550 Phosphopantetheine attachment site JYK00_00740 PF01230 HIT domain JYK00_00745 PF00709 Adenylosuccinate synthetase JYK00_00755 PF12706 Beta-lactamase superfamily domain JYK00_00765 PF01297 Zinc-uptake complex component A periplasmic JYK00_00770 PF00005 ABC transporter JYK00_00775 PF00950 ABC 3 transport family JYK00_00785 PF17912 MalK OB fold domain JYK00_00785 PF03459 TOBE domain JYK00_00785 PF00005 ABC transporter JYK00_00800 PF00440 Bacterial regulatory proteins, tetR family JYK00_00805 PF01197 Ribosomal protein L31 JYK00_00810 PF00575 S1 RNA binding domain JYK00_00815 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JYK00_00815 PF00037 4Fe-4S binding domain JYK00_00815 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JYK00_00825 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JYK00_00825 PF00037 4Fe-4S binding domain JYK00_00825 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JYK00_00845 PF02592 Putative vitamin uptake transporter JYK00_00850 PF02645 Uncharacterised protein, DegV family COG1307 JYK00_00855 PF18073 Rubredoxin metal binding domain JYK00_00860 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_00860 PF17871 AAA lid domain JYK00_00860 PF02861 Clp amino terminal domain, pathogenicity island component JYK00_00860 PF10431 C-terminal, D2-small domain, of ClpB protein JYK00_00860 PF07724 AAA domain (Cdc48 subfamily) JYK00_00870 PF00106 short chain dehydrogenase JYK00_00880 PF00672 HAMP domain JYK00_00880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_00880 PF12729 Four helix bundle sensory module for signal transduction JYK00_00885 PF01966 HD domain JYK00_00895 PF00672 HAMP domain JYK00_00895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_00905 PF00009 Elongation factor Tu GTP binding domain JYK00_00905 PF04760 Translation initiation factor IF-2, N-terminal region JYK00_00905 PF11987 Translation-initiation factor 2 JYK00_00910 PF00364 Biotin-requiring enzyme JYK00_00910 PF00682 HMGL-like JYK00_00910 PF02436 Conserved carboxylase domain JYK00_00915 PF02152 Dihydroneopterin aldolase JYK00_00915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JYK00_00925 PF00596 Class II Aldolase and Adducin N-terminal domain JYK00_00930 PF01642 Methylmalonyl-CoA mutase JYK00_00930 PF02310 B12 binding domain JYK00_00935 PF01680 SOR/SNZ family JYK00_00940 PF01174 SNO glutamine amidotransferase family JYK00_00965 PF00919 Uncharacterized protein family UPF0004 JYK00_00965 PF18693 TRAM domain JYK00_00965 PF04055 Radical SAM superfamily JYK00_00970 PF01066 CDP-alcohol phosphatidyltransferase JYK00_00980 PF00154 recA bacterial DNA recombination protein JYK00_00985 PF02631 RecX family JYK00_00990 PF01966 HD domain JYK00_00990 PF00013 KH domain JYK00_00990 PF12072 Domain of unknown function (DUF3552) JYK00_00995 PF02049 Flagellar hook-basal body complex protein FliE JYK00_01000 PF00460 Flagella basal body rod protein JYK00_01000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JYK00_01005 PF00460 Flagella basal body rod protein JYK00_01020 PF03775 Septum formation inhibitor MinC, C-terminal domain JYK00_01025 PF07516 SecA Wing and Scaffold domain JYK00_01025 PF07517 SecA DEAD-like domain JYK00_01025 PF01043 SecA preprotein cross-linking domain JYK00_01045 PF01039 Carboxyl transferase domain JYK00_01055 PF00364 Biotin-requiring enzyme JYK00_01060 PF02310 B12 binding domain JYK00_01060 PF01642 Methylmalonyl-CoA mutase JYK00_01070 PF13181 Tetratricopeptide repeat JYK00_01075 PF02562 PhoH-like protein JYK00_01080 PF07698 7TM receptor with intracellular HD hydrolase JYK00_01080 PF07697 7TM-HD extracellular JYK00_01080 PF01966 HD domain JYK00_01085 PF02130 Uncharacterized protein family UPF0054 JYK00_01090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JYK00_01090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JYK00_01090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JYK00_01100 PF00578 AhpC/TSA family JYK00_01125 PF03787 RAMP superfamily JYK00_01140 PF12801 4Fe-4S binding domain JYK00_01150 PF02447 GntP family permease JYK00_01155 PF13660 Domain of unknown function (DUF4147) JYK00_01155 PF05161 MOFRL family JYK00_01165 PF13941 MutL protein JYK00_01175 PF00288 GHMP kinases N terminal domain JYK00_01180 PF13654 AAA domain JYK00_01180 PF05362 Lon protease (S16) C-terminal proteolytic domain JYK00_01185 PF00579 tRNA synthetases class I (W and Y) JYK00_01190 PF00924 Mechanosensitive ion channel JYK00_01190 PF05552 Conserved TM helix JYK00_01195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_01195 PF02743 Cache domain JYK00_01195 PF00672 HAMP domain JYK00_01200 PF01609 Transposase DDE domain JYK00_01205 PF01609 Transposase DDE domain JYK00_01215 PF01966 HD domain JYK00_01215 PF00072 Response regulator receiver domain JYK00_01230 PF11849 Domain of unknown function (DUF3369) JYK00_01235 PF00211 Adenylate and Guanylate cyclase catalytic domain JYK00_01240 PF02527 rRNA small subunit methyltransferase G JYK00_01245 PF00669 Bacterial flagellin N-terminal helical region JYK00_01245 PF00700 Bacterial flagellin C-terminal helical region JYK00_01250 PF00460 Flagella basal body rod protein JYK00_01250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JYK00_01250 PF00460 Flagella basal body rod protein JYK00_01250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JYK00_01270 PF01609 Transposase DDE domain JYK00_01290 PF00664 ABC transporter transmembrane region JYK00_01290 PF00005 ABC transporter JYK00_01295 PF00356 Bacterial regulatory proteins, lacI family JYK00_01300 PF13416 Bacterial extracellular solute-binding protein JYK00_01305 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01310 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01320 PF00480 ROK family JYK00_01320 PF01325 Iron dependent repressor, N-terminal DNA binding domain JYK00_01325 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01330 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01350 PF07837 Formiminotransferase domain, N-terminal subdomain JYK00_01350 PF02971 Formiminotransferase domain JYK00_01355 PF00459 Inositol monophosphatase family JYK00_01360 PF03717 Penicillin-binding Protein dimerisation domain JYK00_01360 PF00905 Penicillin binding protein transpeptidase domain JYK00_01365 PF00749 tRNA synthetases class I (E and Q), catalytic domain JYK00_01375 PF01008 Initiation factor 2 subunit family JYK00_01390 PF00850 Histone deacetylase domain JYK00_01395 PF02502 Ribose/Galactose Isomerase JYK00_01400 PF01740 STAS domain JYK00_01405 PF01740 STAS domain JYK00_01410 PF01726 LexA DNA binding domain JYK00_01410 PF00717 Peptidase S24-like JYK00_01420 PF03989 DNA gyrase C-terminal domain, beta-propeller JYK00_01420 PF00521 DNA gyrase/topoisomerase IV, subunit A JYK00_01425 PF01588 Putative tRNA binding domain JYK00_01425 PF09334 tRNA synthetases class I (M) JYK00_01425 PF08264 Anticodon-binding domain of tRNA JYK00_01430 PF01934 Protein of unknown function DUF86 JYK00_01445 PF01934 Protein of unknown function DUF86 JYK00_01460 PF00313 'Cold-shock' DNA-binding domain JYK00_01475 PF02445 Quinolinate synthetase A protein JYK00_01480 PF01958 Domain of unknown function DUF108 JYK00_01480 PF03447 Homoserine dehydrogenase, NAD binding domain JYK00_01485 PF00005 ABC transporter JYK00_01485 PF13732 Domain of unknown function (DUF4162) JYK00_01510 PF00005 ABC transporter JYK00_01515 PF12399 Branched-chain amino acid ATP-binding cassette transporter JYK00_01515 PF00005 ABC transporter JYK00_01520 PF02653 Branched-chain amino acid transport system / permease component JYK00_01520 PF11862 Domain of unknown function (DUF3382) JYK00_01525 PF02653 Branched-chain amino acid transport system / permease component JYK00_01545 PF04551 GcpE protein JYK00_01550 PF17820 PDZ domain JYK00_01550 PF02163 Peptidase family M50 JYK00_01555 PF01584 CheW-like domain JYK00_01555 PF02895 Signal transducing histidine kinase, homodimeric domain JYK00_01555 PF07194 P2 response regulator binding domain JYK00_01555 PF01627 Hpt domain JYK00_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_01565 PF00155 Aminotransferase class I and II JYK00_01570 PF01242 6-pyruvoyl tetrahydropterin synthase JYK00_01575 PF01048 Phosphorylase superfamily JYK00_01580 PF13690 Chemotaxis phosphatase CheX JYK00_01585 PF01926 50S ribosome-binding GTPase JYK00_01590 PF00696 Amino acid kinase family JYK00_01595 PF13514 AAA domain JYK00_01605 PF02562 PhoH-like protein JYK00_01605 PF13638 PIN domain JYK00_01610 PF07733 Bacterial DNA polymerase III alpha NTPase domain JYK00_01610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JYK00_01610 PF14579 Helix-hairpin-helix motif JYK00_01610 PF02811 PHP domain JYK00_01610 PF00929 Exonuclease JYK00_01615 PF01706 FliG C-terminal domain JYK00_01615 PF14842 FliG N-terminal domain JYK00_01615 PF14841 FliG middle domain JYK00_01635 PF01783 Ribosomal L32p protein family JYK00_01640 PF02504 Fatty acid synthesis protein JYK00_01645 PF01380 SIS domain JYK00_01655 PF00497 Bacterial extracellular solute-binding proteins, family 3 JYK00_01660 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01665 PF00005 ABC transporter JYK00_01680 PF00005 ABC transporter JYK00_01690 PF02080 TrkA-C domain JYK00_01690 PF06826 Predicted Permease Membrane Region JYK00_01695 PF00549 CoA-ligase JYK00_01695 PF02629 CoA binding domain JYK00_01700 PF00549 CoA-ligase JYK00_01700 PF08442 ATP-grasp domain JYK00_01720 PF02119 Flagellar P-ring protein JYK00_01725 PF02107 Flagellar L-ring protein JYK00_01730 PF13144 Chaperone for flagella basal body P-ring formation JYK00_01735 PF01751 Toprim domain JYK00_01735 PF00204 DNA gyrase B JYK00_01735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_01735 PF00986 DNA gyrase B subunit, carboxyl terminus JYK00_01745 PF01063 Amino-transferase class IV JYK00_01750 PF00919 Uncharacterized protein family UPF0004 JYK00_01750 PF04055 Radical SAM superfamily JYK00_01755 PF00571 CBS domain JYK00_01755 PF00478 IMP dehydrogenase / GMP reductase domain JYK00_01760 PF00294 pfkB family carbohydrate kinase JYK00_01765 PF00005 ABC transporter JYK00_01780 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JYK00_01780 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JYK00_01785 PF00072 Response regulator receiver domain JYK00_01790 PF01712 Deoxynucleoside kinase JYK00_01795 PF01712 Deoxynucleoside kinase JYK00_01800 PF07724 AAA domain (Cdc48 subfamily) JYK00_01800 PF10431 C-terminal, D2-small domain, of ClpB protein JYK00_01800 PF06689 ClpX C4-type zinc finger JYK00_01805 PF00814 Glycoprotease family JYK00_01815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JYK00_01815 PF02843 Phosphoribosylglycinamide synthetase, C domain JYK00_01815 PF02844 Phosphoribosylglycinamide synthetase, N domain JYK00_01820 PF02142 MGS-like domain JYK00_01820 PF01808 AICARFT/IMPCHase bienzyme JYK00_01825 PF00551 Formyl transferase JYK00_01830 PF00586 AIR synthase related protein, N-terminal domain JYK00_01830 PF02769 AIR synthase related protein, C-terminal domain JYK00_01835 PF00156 Phosphoribosyl transferase domain JYK00_01840 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JYK00_01840 PF02769 AIR synthase related protein, C-terminal domain JYK00_01840 PF00586 AIR synthase related protein, N-terminal domain JYK00_01850 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JYK00_01855 PF01259 SAICAR synthetase JYK00_01860 PF00731 AIR carboxylase JYK00_01865 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JYK00_01865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JYK00_01865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JYK00_01865 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JYK00_01870 PF01979 Amidohydrolase family JYK00_01875 PF00175 Oxidoreductase NAD-binding domain JYK00_01875 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JYK00_01880 PF01180 Dihydroorotate dehydrogenase JYK00_01885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JYK00_01890 PF00156 Phosphoribosyl transferase domain JYK00_01895 PF04997 RNA polymerase Rpb1, domain 1 JYK00_01895 PF00623 RNA polymerase Rpb1, domain 2 JYK00_01895 PF04983 RNA polymerase Rpb1, domain 3 JYK00_01895 PF05000 RNA polymerase Rpb1, domain 4 JYK00_01895 PF04998 RNA polymerase Rpb1, domain 5 JYK00_01900 PF04560 RNA polymerase Rpb2, domain 7 JYK00_01900 PF04565 RNA polymerase Rpb2, domain 3 JYK00_01900 PF10385 RNA polymerase beta subunit external 1 domain JYK00_01900 PF00562 RNA polymerase Rpb2, domain 6 JYK00_01900 PF04563 RNA polymerase beta subunit JYK00_01905 PF00542 Ribosomal protein L7/L12 C-terminal domain JYK00_01905 PF16320 Ribosomal protein L7/L12 dimerisation domain JYK00_01910 PF00466 Ribosomal protein L10 JYK00_01920 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JYK00_01925 PF01479 S4 domain JYK00_01925 PF00849 RNA pseudouridylate synthase JYK00_01930 PF00809 Pterin binding enzyme JYK00_01940 PF01547 Bacterial extracellular solute-binding protein JYK00_01945 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01950 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01955 PF00535 Glycosyl transferase family 2 JYK00_01960 PF01380 SIS domain JYK00_01960 PF01418 Helix-turn-helix domain, rpiR family JYK00_01970 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01975 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_01975 PF14785 Maltose transport system permease protein MalF P2 domain JYK00_01980 PF01547 Bacterial extracellular solute-binding protein JYK00_01985 PF17871 AAA lid domain JYK00_01985 PF02861 Clp amino terminal domain, pathogenicity island component JYK00_01985 PF10431 C-terminal, D2-small domain, of ClpB protein JYK00_01985 PF07724 AAA domain (Cdc48 subfamily) JYK00_01985 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_02000 PF00005 ABC transporter JYK00_02005 PF12399 Branched-chain amino acid ATP-binding cassette transporter JYK00_02005 PF00005 ABC transporter JYK00_02010 PF11862 Domain of unknown function (DUF3382) JYK00_02010 PF02653 Branched-chain amino acid transport system / permease component JYK00_02015 PF02653 Branched-chain amino acid transport system / permease component JYK00_02020 PF13458 Periplasmic binding protein JYK00_02035 PF00005 ABC transporter JYK00_02040 PF00664 ABC transporter transmembrane region JYK00_02040 PF00005 ABC transporter JYK00_02070 PF03477 ATP cone domain JYK00_02070 PF00317 Ribonucleotide reductase, all-alpha domain JYK00_02070 PF02867 Ribonucleotide reductase, barrel domain JYK00_02085 PF01225 Mur ligase family, catalytic domain JYK00_02085 PF02875 Mur ligase family, glutamate ligase domain JYK00_02085 PF08245 Mur ligase middle domain JYK00_02090 PF00561 alpha/beta hydrolase fold JYK00_02090 PF08386 TAP-like protein JYK00_02095 PF07478 D-ala D-ala ligase C-terminus JYK00_02095 PF01820 D-ala D-ala ligase N-terminus JYK00_02110 PF00291 Pyridoxal-phosphate dependent enzyme JYK00_02115 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_02120 PF00403 Heavy-metal-associated domain JYK00_02125 PF00403 Heavy-metal-associated domain JYK00_02140 PF01871 AMMECR1 JYK00_02145 PF00072 Response regulator receiver domain JYK00_02150 PF00488 MutS domain V JYK00_02150 PF05190 MutS family domain IV JYK00_02150 PF05192 MutS domain III JYK00_02150 PF05188 MutS domain II JYK00_02150 PF01624 MutS domain I JYK00_02155 PF00814 Glycoprotease family JYK00_02160 PF17248 Family of unknown function (DUF5317) JYK00_02165 PF00072 Response regulator receiver domain JYK00_02170 PF00120 Glutamine synthetase, catalytic domain JYK00_02170 PF03951 Glutamine synthetase, beta-Grasp domain JYK00_02180 PF00994 Probable molybdopterin binding domain JYK00_02185 PF01967 MoaC family JYK00_02190 PF06463 Molybdenum Cofactor Synthesis C JYK00_02190 PF04055 Radical SAM superfamily JYK00_02195 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_02200 PF08402 TOBE domain JYK00_02200 PF00005 ABC transporter JYK00_02210 PF00994 Probable molybdopterin binding domain JYK00_02210 PF03454 MoeA C-terminal region (domain IV) JYK00_02210 PF03453 MoeA N-terminal region (domain I and II) JYK00_02215 PF00990 Diguanylate cyclase, GGDEF domain JYK00_02235 PF00687 Ribosomal protein L1p/L10e family JYK00_02240 PF00298 Ribosomal protein L11, RNA binding domain JYK00_02240 PF03946 Ribosomal protein L11, N-terminal domain JYK00_02245 PF18298 NusG additional domain JYK00_02245 PF02357 Transcription termination factor nusG JYK00_02245 PF00467 KOW motif JYK00_02250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JYK00_02260 PF00471 Ribosomal protein L33 JYK00_02275 PF01084 Ribosomal protein S18 JYK00_02280 PF00436 Single-strand binding protein family JYK00_02285 PF01250 Ribosomal protein S6 JYK00_02300 PF01161 Phosphatidylethanolamine-binding protein JYK00_02305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYK00_02305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYK00_02305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYK00_02305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYK00_02310 PF00216 Bacterial DNA-binding protein JYK00_02315 PF01202 Shikimate kinase JYK00_02320 PF01894 Uncharacterised protein family UPF0047 JYK00_02325 PF00464 Serine hydroxymethyltransferase JYK00_02335 PF02561 Flagellar protein FliS JYK00_02345 PF00293 NUDIX domain JYK00_02355 PF01042 Endoribonuclease L-PSP JYK00_02365 PF00186 Dihydrofolate reductase JYK00_02375 PF01934 Protein of unknown function DUF86 JYK00_02380 PF01584 CheW-like domain JYK00_02385 PF17764 3′ DNA-binding domain (3′BD) JYK00_02385 PF04851 Type III restriction enzyme, res subunit JYK00_02385 PF18074 Primosomal protein N C-terminal domain JYK00_02385 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JYK00_02390 PF02861 Clp amino terminal domain, pathogenicity island component JYK00_02390 PF10431 C-terminal, D2-small domain, of ClpB protein JYK00_02390 PF17871 AAA lid domain JYK00_02390 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_02390 PF07724 AAA domain (Cdc48 subfamily) JYK00_02395 PF01098 Cell cycle protein JYK00_02405 PF02091 Glycyl-tRNA synthetase alpha subunit JYK00_02410 PF05746 DALR anticodon binding domain JYK00_02410 PF02092 Glycyl-tRNA synthetase beta subunit JYK00_02415 PF02915 Rubrerythrin JYK00_02420 PF01880 Desulfoferrodoxin JYK00_02425 PF01145 SPFH domain / Band 7 family JYK00_02430 PF01145 SPFH domain / Band 7 family JYK00_02440 PF01029 NusB family JYK00_02450 PF08207 Elongation factor P (EF-P) KOW-like domain JYK00_02450 PF09285 Elongation factor P, C-terminal JYK00_02450 PF01132 Elongation factor P (EF-P) OB domain JYK00_02455 PF00672 HAMP domain JYK00_02455 PF07228 Stage II sporulation protein E (SpoIIE) JYK00_02460 PF00072 Response regulator receiver domain JYK00_02460 PF00486 Transcriptional regulatory protein, C terminal JYK00_02475 PF00005 ABC transporter JYK00_02485 PF00270 DEAD/DEAH box helicase JYK00_02485 PF00271 Helicase conserved C-terminal domain JYK00_02490 PF01327 Polypeptide deformylase JYK00_02495 PF01975 Survival protein SurE JYK00_02505 PF10609 NUBPL iron-transfer P-loop NTPase JYK00_02510 PF12848 ABC transporter JYK00_02510 PF16326 ABC transporter C-terminal domain JYK00_02510 PF00005 ABC transporter JYK00_02515 PF01613 Flavin reductase like domain JYK00_02515 PF00301 Rubredoxin JYK00_02530 PF01435 Peptidase family M48 JYK00_02530 PF16491 CAAX prenyl protease N-terminal, five membrane helices JYK00_02535 PF08241 Methyltransferase domain JYK00_02550 PF01747 ATP-sulfurylase JYK00_02550 PF14306 PUA-like domain JYK00_02570 PF02811 PHP domain JYK00_02585 PF00117 Glutamine amidotransferase class-I JYK00_02585 PF06418 CTP synthase N-terminus JYK00_02590 PF02811 PHP domain JYK00_02595 PF00889 Elongation factor TS JYK00_02600 PF02578 Multi-copper polyphenol oxidoreductase laccase JYK00_02605 PF03239 Iron permease FTR1 family JYK00_02615 PF00672 HAMP domain JYK00_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_02615 PF02743 Cache domain JYK00_02630 PF13361 UvrD-like helicase C-terminal domain JYK00_02630 PF00580 UvrD/REP helicase N-terminal domain JYK00_02640 PF04542 Sigma-70 region 2 JYK00_02640 PF08281 Sigma-70, region 4 JYK00_02655 PF01938 TRAM domain JYK00_02655 PF04055 Radical SAM superfamily JYK00_02655 PF00919 Uncharacterized protein family UPF0004 JYK00_02660 PF00563 EAL domain JYK00_02660 PF00990 Diguanylate cyclase, GGDEF domain JYK00_02660 PF03707 Bacterial signalling protein N terminal repeat JYK00_02665 PF00072 Response regulator receiver domain JYK00_02670 PF00478 IMP dehydrogenase / GMP reductase domain JYK00_02670 PF00571 CBS domain JYK00_02685 PF01050 Mannose-6-phosphate isomerase JYK00_02685 PF00483 Nucleotidyl transferase JYK00_02695 PF13614 AAA domain JYK00_02695 PF02706 Chain length determinant protein JYK00_02695 PF13807 G-rich domain on putative tyrosine kinase JYK00_02705 PF03006 Haemolysin-III related JYK00_02740 PF00580 UvrD/REP helicase N-terminal domain JYK00_02740 PF13361 UvrD-like helicase C-terminal domain JYK00_02740 PF12705 PD-(D/E)XK nuclease superfamily JYK00_02750 PF01695 IstB-like ATP binding protein JYK00_02755 PF00665 Integrase core domain JYK00_02805 PF04255 Protein of unknown function (DUF433) JYK00_02835 PF02397 Bacterial sugar transferase JYK00_02840 PF00535 Glycosyl transferase family 2 JYK00_02845 PF16363 GDP-mannose 4,6 dehydratase JYK00_02850 PF01370 NAD dependent epimerase/dehydratase family JYK00_02855 PF13439 Glycosyltransferase Family 4 JYK00_02855 PF00534 Glycosyl transferases group 1 JYK00_02880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JYK00_02880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JYK00_02880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JYK00_02890 PF16363 GDP-mannose 4,6 dehydratase JYK00_02895 PF01370 NAD dependent epimerase/dehydratase family JYK00_02900 PF02397 Bacterial sugar transferase JYK00_02905 PF02397 Bacterial sugar transferase JYK00_02910 PF08544 GHMP kinases C terminal JYK00_02910 PF00288 GHMP kinases N terminal domain JYK00_02915 PF13580 SIS domain JYK00_02920 PF08645 Polynucleotide kinase 3 phosphatase JYK00_02925 PF02397 Bacterial sugar transferase JYK00_02935 PF00872 Transposase, Mutator family JYK00_02945 PF16363 GDP-mannose 4,6 dehydratase JYK00_02950 PF01609 Transposase DDE domain JYK00_02955 PF01370 NAD dependent epimerase/dehydratase family JYK00_02985 PF01966 HD domain JYK00_02985 PF13286 Phosphohydrolase-associated domain JYK00_03040 PF02463 RecF/RecN/SMC N terminal domain JYK00_03045 PF12705 PD-(D/E)XK nuclease superfamily JYK00_03045 PF13361 UvrD-like helicase C-terminal domain JYK00_03045 PF00580 UvrD/REP helicase N-terminal domain JYK00_03075 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system JYK00_03100 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) JYK00_03105 PF00583 Acetyltransferase (GNAT) family JYK00_03110 PF01554 MatE JYK00_03120 PF01979 Amidohydrolase family JYK00_03135 PF01979 Amidohydrolase family JYK00_03140 PF00664 ABC transporter transmembrane region JYK00_03140 PF00005 ABC transporter JYK00_03145 PF00664 ABC transporter transmembrane region JYK00_03145 PF00005 ABC transporter JYK00_03160 PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system JYK00_03190 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JYK00_03190 PF00037 4Fe-4S binding domain JYK00_03190 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JYK00_03195 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JYK00_03195 PF02256 Iron hydrogenase small subunit JYK00_03195 PF02906 Iron only hydrogenase large subunit, C-terminal domain JYK00_03195 PF00037 4Fe-4S binding domain JYK00_03200 PF06971 Putative DNA-binding protein N-terminus JYK00_03200 PF02629 CoA binding domain JYK00_03220 PF00707 Translation initiation factor IF-3, C-terminal domain JYK00_03220 PF05198 Translation initiation factor IF-3, N-terminal domain JYK00_03225 PF01632 Ribosomal protein L35 JYK00_03230 PF00453 Ribosomal protein L20 JYK00_03235 PF00318 Ribosomal protein S2 JYK00_03240 PF02223 Thymidylate kinase JYK00_03245 PF01313 Bacterial export proteins, family 3 JYK00_03250 PF00813 FliP family JYK00_03260 PF00072 Response regulator receiver domain JYK00_03265 PF01584 CheW-like domain JYK00_03270 PF07194 P2 response regulator binding domain JYK00_03270 PF01627 Hpt domain JYK00_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_03270 PF02895 Signal transducing histidine kinase, homodimeric domain JYK00_03270 PF01584 CheW-like domain JYK00_03280 PF01479 S4 domain JYK00_03280 PF01728 FtsJ-like methyltransferase JYK00_03290 PF01416 tRNA pseudouridine synthase JYK00_03300 PF03600 Citrate transporter JYK00_03305 PF01926 50S ribosome-binding GTPase JYK00_03305 PF12631 MnmE helical domain JYK00_03305 PF10396 GTP-binding protein TrmE N-terminus JYK00_03310 PF06130 Phosphate propanoyltransferase JYK00_03320 PF01048 Phosphorylase superfamily JYK00_03325 PF02743 Cache domain JYK00_03325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_03325 PF00672 HAMP domain JYK00_03330 PF01311 Bacterial export proteins, family 1 JYK00_03335 PF01312 FlhB HrpN YscU SpaS Family JYK00_03340 PF13419 Haloacid dehalogenase-like hydrolase JYK00_03350 PF00534 Glycosyl transferases group 1 JYK00_03350 PF13439 Glycosyltransferase Family 4 JYK00_03355 PF13439 Glycosyltransferase Family 4 JYK00_03355 PF00534 Glycosyl transferases group 1 JYK00_03360 PF00535 Glycosyl transferase family 2 JYK00_03370 PF00551 Formyl transferase JYK00_03370 PF02911 Formyl transferase, C-terminal domain JYK00_03380 PF16363 GDP-mannose 4,6 dehydratase JYK00_03415 PF07726 ATPase family associated with various cellular activities (AAA) JYK00_03415 PF17863 AAA lid domain JYK00_03425 PF01098 Cell cycle protein JYK00_03430 PF04055 Radical SAM superfamily JYK00_03430 PF06969 HemN C-terminal domain JYK00_03440 PF02934 GatB/GatE catalytic domain JYK00_03440 PF02637 GatB domain JYK00_03445 PF01425 Amidase JYK00_03455 PF02272 DHHA1 domain JYK00_03455 PF01411 tRNA synthetases class II (A) JYK00_03455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JYK00_03465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_03465 PF00512 His Kinase A (phospho-acceptor) domain JYK00_03485 PF07499 RuvA, C-terminal domain JYK00_03485 PF01330 RuvA N terminal domain JYK00_03490 PF01026 TatD related DNase JYK00_03495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JYK00_03495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JYK00_03500 PF02535 ZIP Zinc transporter JYK00_03505 PF00795 Carbon-nitrogen hydrolase JYK00_03505 PF00583 Acetyltransferase (GNAT) family JYK00_03510 PF02310 B12 binding domain JYK00_03510 PF13282 Domain of unknown function (DUF4070) JYK00_03510 PF04055 Radical SAM superfamily JYK00_03515 PF04025 Domain of unknown function (DUF370) JYK00_03525 PF16198 tRNA pseudouridylate synthase B C-terminal domain JYK00_03525 PF01509 TruB family pseudouridylate synthase (N terminal domain) JYK00_03530 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JYK00_03530 PF01409 tRNA synthetases class II core domain (F) JYK00_03535 PF07687 Peptidase dimerisation domain JYK00_03535 PF01546 Peptidase family M20/M25/M40 JYK00_03540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JYK00_03540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JYK00_03545 PF01966 HD domain JYK00_03550 PF00881 Nitroreductase family JYK00_03560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYK00_03560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYK00_03565 PF04101 Glycosyltransferase family 28 C-terminal domain JYK00_03565 PF03033 Glycosyltransferase family 28 N-terminal domain JYK00_03570 PF01225 Mur ligase family, catalytic domain JYK00_03570 PF02875 Mur ligase family, glutamate ligase domain JYK00_03570 PF08245 Mur ligase middle domain JYK00_03575 PF06470 SMC proteins Flexible Hinge Domain JYK00_03575 PF02463 RecF/RecN/SMC N terminal domain JYK00_03590 PF02698 DUF218 domain JYK00_03600 PF00710 Asparaginase, N-terminal JYK00_03600 PF17763 Glutaminase/Asparaginase C-terminal domain JYK00_03605 PF01594 AI-2E family transporter JYK00_03620 PF06949 Protein of unknown function (DUF1292) JYK00_03630 PF00465 Iron-containing alcohol dehydrogenase JYK00_03635 PF00365 Phosphofructokinase JYK00_03640 PF00361 Proton-conducting membrane transporter JYK00_03645 PF04029 2-phosphosulpholactate phosphatase JYK00_03650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JYK00_03665 PF00117 Glutamine amidotransferase class-I JYK00_03665 PF00958 GMP synthase C terminal domain JYK00_03665 PF02540 NAD synthase JYK00_03670 PF00483 Nucleotidyl transferase JYK00_03685 PF03129 Anticodon binding domain JYK00_03685 PF13393 Histidyl-tRNA synthetase JYK00_03690 PF00005 ABC transporter JYK00_03710 PF13538 UvrD-like helicase C-terminal domain JYK00_03710 PF14490 Helix-hairpin-helix containing domain JYK00_03710 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JYK00_03715 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_03730 PF06463 Molybdenum Cofactor Synthesis C JYK00_03730 PF04055 Radical SAM superfamily JYK00_03740 PF13537 Glutamine amidotransferase domain JYK00_03740 PF00733 Asparagine synthase JYK00_03745 PF00483 Nucleotidyl transferase JYK00_03750 PF16363 GDP-mannose 4,6 dehydratase JYK00_03755 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JYK00_03760 PF08889 WbqC-like protein family JYK00_03765 PF00669 Bacterial flagellin N-terminal helical region JYK00_03765 PF00700 Bacterial flagellin C-terminal helical region JYK00_03770 PF00700 Bacterial flagellin C-terminal helical region JYK00_03770 PF00669 Bacterial flagellin N-terminal helical region JYK00_03775 PF00535 Glycosyl transferase family 2 JYK00_03775 PF13181 Tetratricopeptide repeat JYK00_03800 PF00953 Glycosyl transferase family 4 JYK00_03815 PF01047 MarR family JYK00_03825 PF01139 tRNA-splicing ligase RtcB JYK00_03830 PF01467 Cytidylyltransferase-like JYK00_03835 PF00772 DnaB-like helicase N terminal domain JYK00_03835 PF03796 DnaB-like helicase C terminal domain JYK00_03845 PF01687 Riboflavin kinase JYK00_03845 PF06574 FAD synthetase JYK00_03850 PF00730 HhH-GPD superfamily base excision DNA repair protein JYK00_03850 PF10576 Iron-sulfur binding domain of endonuclease III JYK00_03850 PF00633 Helix-hairpin-helix motif JYK00_03855 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JYK00_03865 PF00860 Permease family JYK00_03870 PF01475 Ferric uptake regulator family JYK00_03875 PF10417 C-terminal domain of 1-Cys peroxiredoxin JYK00_03875 PF00578 AhpC/TSA family JYK00_03880 PF00210 Ferritin-like domain JYK00_03885 PF01880 Desulfoferrodoxin JYK00_03885 PF06397 Desulfoferrodoxin, N-terminal domain JYK00_03890 PF01695 IstB-like ATP binding protein JYK00_03895 PF00665 Integrase core domain JYK00_03900 PF06397 Desulfoferrodoxin, N-terminal domain JYK00_03900 PF01880 Desulfoferrodoxin JYK00_03905 PF11896 Domain of unknown function (DUF3416) JYK00_03905 PF00128 Alpha amylase, catalytic domain JYK00_03910 PF03714 Bacterial pullanase-associated domain JYK00_03910 PF00128 Alpha amylase, catalytic domain JYK00_03910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JYK00_03915 PF00072 Response regulator receiver domain JYK00_03920 PF08264 Anticodon-binding domain of tRNA JYK00_03920 PF06827 Zinc finger found in FPG and IleRS JYK00_03920 PF00133 tRNA synthetases class I (I, L, M and V) JYK00_03930 PF00892 EamA-like transporter family JYK00_03940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JYK00_03940 PF00460 Flagella basal body rod protein JYK00_03945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JYK00_03945 PF00460 Flagella basal body rod protein JYK00_03955 PF01134 Glucose inhibited division protein A JYK00_03955 PF13932 GidA associated domain JYK00_03960 PF02887 Pyruvate kinase, alpha/beta domain JYK00_03960 PF00224 Pyruvate kinase, barrel domain JYK00_03975 PF00849 RNA pseudouridylate synthase JYK00_03975 PF01479 S4 domain JYK00_03990 PF00164 Ribosomal protein S12/S23 JYK00_03995 PF00177 Ribosomal protein S7p/S5e JYK00_04000 PF03764 Elongation factor G, domain IV JYK00_04000 PF00009 Elongation factor Tu GTP binding domain JYK00_04000 PF14492 Elongation Factor G, domain II JYK00_04000 PF03144 Elongation factor Tu domain 2 JYK00_04000 PF00679 Elongation factor G C-terminus JYK00_04005 PF00009 Elongation factor Tu GTP binding domain JYK00_04005 PF03144 Elongation factor Tu domain 2 JYK00_04005 PF03143 Elongation factor Tu C-terminal domain JYK00_04010 PF00338 Ribosomal protein S10p/S20e JYK00_04015 PF00297 Ribosomal protein L3 JYK00_04020 PF00573 Ribosomal protein L4/L1 family JYK00_04025 PF00276 Ribosomal protein L23 JYK00_04030 PF00181 Ribosomal Proteins L2, RNA binding domain JYK00_04030 PF03947 Ribosomal Proteins L2, C-terminal domain JYK00_04035 PF00203 Ribosomal protein S19 JYK00_04040 PF00237 Ribosomal protein L22p/L17e JYK00_04045 PF00189 Ribosomal protein S3, C-terminal domain JYK00_04045 PF07650 KH domain JYK00_04050 PF00252 Ribosomal protein L16p/L10e JYK00_04055 PF00831 Ribosomal L29 protein JYK00_04060 PF00366 Ribosomal protein S17 JYK00_04065 PF00238 Ribosomal protein L14p/L23e JYK00_04070 PF00467 KOW motif JYK00_04070 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JYK00_04075 PF00673 ribosomal L5P family C-terminus JYK00_04075 PF00281 Ribosomal protein L5 JYK00_04080 PF00253 Ribosomal protein S14p/S29e JYK00_04085 PF00410 Ribosomal protein S8 JYK00_04090 PF00347 Ribosomal protein L6 JYK00_04095 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JYK00_04100 PF00333 Ribosomal protein S5, N-terminal domain JYK00_04100 PF03719 Ribosomal protein S5, C-terminal domain JYK00_04105 PF00327 Ribosomal protein L30p/L7e JYK00_04110 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JYK00_04115 PF00344 SecY translocase JYK00_04120 PF05191 Adenylate kinase, active site lid JYK00_04125 PF00557 Metallopeptidase family M24 JYK00_04130 PF01176 Translation initiation factor 1A / IF-1 JYK00_04135 PF00444 Ribosomal protein L36 JYK00_04140 PF00416 Ribosomal protein S13/S18 JYK00_04145 PF00411 Ribosomal protein S11 JYK00_04150 PF01479 S4 domain JYK00_04150 PF00163 Ribosomal protein S4/S9 N-terminal domain JYK00_04155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JYK00_04155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JYK00_04155 PF01000 RNA polymerase Rpb3/RpoA insert domain JYK00_04160 PF01196 Ribosomal protein L17 JYK00_04165 PF05697 Bacterial trigger factor protein (TF) JYK00_04165 PF05698 Bacterial trigger factor protein (TF) C-terminus JYK00_04170 PF00574 Clp protease JYK00_04175 PF01709 Transcriptional regulator JYK00_04185 PF03705 CheR methyltransferase, all-alpha domain JYK00_04185 PF01739 CheR methyltransferase, SAM binding domain JYK00_04190 PF00849 RNA pseudouridylate synthase JYK00_04190 PF01479 S4 domain JYK00_04200 PF01113 Dihydrodipicolinate reductase, N-terminus JYK00_04210 PF00291 Pyridoxal-phosphate dependent enzyme JYK00_04215 PF16552 D-ornithine 4,5-aminomutase alpha-subunit JYK00_04220 PF02310 B12 binding domain JYK00_04220 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit JYK00_04220 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase JYK00_04235 PF01476 LysM domain JYK00_04235 PF03734 L,D-transpeptidase catalytic domain JYK00_04250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JYK00_04250 PF00128 Alpha amylase, catalytic domain JYK00_04260 PF02683 Cytochrome C biogenesis protein transmembrane region JYK00_04270 PF00462 Glutaredoxin JYK00_04275 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_04280 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_04280 PF13192 Thioredoxin domain JYK00_04290 PF00933 Glycosyl hydrolase family 3 N terminal domain JYK00_04295 PF13416 Bacterial extracellular solute-binding protein JYK00_04300 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_04305 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_04310 PF01380 SIS domain JYK00_04320 PF00005 ABC transporter JYK00_04330 PF00072 Response regulator receiver domain JYK00_04330 PF08279 HTH domain JYK00_04340 PF13291 ACT domain JYK00_04340 PF04607 Region found in RelA / SpoT proteins JYK00_04340 PF02824 TGS domain JYK00_04345 PF02580 D-Tyr-tRNA(Tyr) deacylase JYK00_04355 PF13581 Histidine kinase-like ATPase domain JYK00_04370 PF00005 ABC transporter JYK00_04390 PF02548 Ketopantoate hydroxymethyltransferase JYK00_04395 PF04127 DNA / pantothenate metabolism flavoprotein JYK00_04395 PF02441 Flavoprotein JYK00_04405 PF01769 Divalent cation transporter JYK00_04405 PF00571 CBS domain JYK00_04405 PF03448 MgtE intracellular N domain JYK00_04410 PF02616 Segregation and condensation protein ScpA JYK00_04415 PF04079 Segregation and condensation complex subunit ScpB JYK00_04420 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_04420 PF07724 AAA domain (Cdc48 subfamily) JYK00_04420 PF17871 AAA lid domain JYK00_04420 PF02861 Clp amino terminal domain, pathogenicity island component JYK00_04420 PF10431 C-terminal, D2-small domain, of ClpB protein JYK00_04425 PF04509 CheC-like family JYK00_04425 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JYK00_04430 PF02154 Flagellar motor switch protein FliM JYK00_04430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JYK00_04440 PF00691 OmpA family JYK00_04440 PF13677 Membrane MotB of proton-channel complex MotA/MotB JYK00_04445 PF01618 MotA/TolQ/ExbB proton channel family JYK00_04450 PF06289 Flagellar and Swarming motility proteins JYK00_04455 PF07196 Flagellin hook IN motif JYK00_04455 PF07559 Flagellar basal body protein FlaE JYK00_04455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JYK00_04455 PF00460 Flagella basal body rod protein JYK00_04460 PF03963 Flagellar hook capping protein - N-terminal region JYK00_04460 PF13861 FlgD Tudor-like domain JYK00_04460 PF13860 FlgD Ig-like domain JYK00_04475 PF14492 Elongation Factor G, domain II JYK00_04475 PF00679 Elongation factor G C-terminus JYK00_04475 PF00009 Elongation factor Tu GTP binding domain JYK00_04475 PF03764 Elongation factor G, domain IV JYK00_04480 PF01175 Urocanase Rossmann-like domain JYK00_04480 PF17392 Urocanase C-terminal domain JYK00_04480 PF17391 Urocanase N-terminal domain JYK00_04485 PF07687 Peptidase dimerisation domain JYK00_04485 PF01546 Peptidase family M20/M25/M40 JYK00_04495 PF17785 PUA-like domain JYK00_04495 PF10672 S-adenosylmethionine-dependent methyltransferase JYK00_04500 PF00465 Iron-containing alcohol dehydrogenase JYK00_04505 PF02347 Glycine cleavage system P-protein JYK00_04510 PF02347 Glycine cleavage system P-protein JYK00_04515 PF01571 Aminomethyltransferase folate-binding domain JYK00_04515 PF08669 Glycine cleavage T-protein C-terminal barrel domain JYK00_04525 PF00795 Carbon-nitrogen hydrolase JYK00_04530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JYK00_04535 PF00202 Aminotransferase class-III JYK00_04540 PF13840 ACT domain JYK00_04540 PF01842 ACT domain JYK00_04540 PF00696 Amino acid kinase family JYK00_04545 PF14602 Hexapeptide repeat of succinyl-transferase JYK00_04545 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_04545 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal JYK00_04550 PF05173 Dihydrodipicolinate reductase, C-terminus JYK00_04550 PF01113 Dihydrodipicolinate reductase, N-terminus JYK00_04555 PF00701 Dihydrodipicolinate synthetase family JYK00_04560 PF01678 Diaminopimelate epimerase JYK00_04565 PF01118 Semialdehyde dehydrogenase, NAD binding domain JYK00_04565 PF02774 Semialdehyde dehydrogenase, dimerisation domain JYK00_04570 PF00106 short chain dehydrogenase JYK00_04585 PF03787 RAMP superfamily JYK00_04595 PF03787 RAMP superfamily JYK00_04600 PF03750 Csm2 Type III-A JYK00_04605 PF18211 Csm1 subunit domain B JYK00_04635 PF09827 CRISPR associated protein Cas2 JYK00_04640 PF01867 CRISPR associated protein Cas1 JYK00_04645 PF09827 CRISPR associated protein Cas2 JYK00_04690 PF09269 Domain of unknown function (DUF1967) JYK00_04690 PF01018 GTP1/OBG JYK00_04690 PF01926 50S ribosome-binding GTPase JYK00_04695 PF01467 Cytidylyltransferase-like JYK00_04700 PF01207 Dihydrouridine synthase (Dus) JYK00_04710 PF00155 Aminotransferase class I and II JYK00_04715 PF00753 Metallo-beta-lactamase superfamily JYK00_04720 PF00912 Transglycosylase JYK00_04720 PF00905 Penicillin binding protein transpeptidase domain JYK00_04720 PF14814 Bifunctional transglycosylase second domain JYK00_04730 PF00334 Nucleoside diphosphate kinase JYK00_04740 PF09967 VWA-like domain (DUF2201) JYK00_04740 PF13203 Putative metallopeptidase domain JYK00_04750 PF18146 Damage-inducible protein CinA KH domain JYK00_04750 PF00994 Probable molybdopterin binding domain JYK00_04750 PF02464 Competence-damaged protein JYK00_04755 PF00356 Bacterial regulatory proteins, lacI family JYK00_04760 PF01119 DNA mismatch repair protein, C-terminal domain JYK00_04760 PF08676 MutL C terminal dimerisation domain JYK00_04765 PF00128 Alpha amylase, catalytic domain JYK00_04765 PF09178 Domain of unknown function (DUF1945) JYK00_04780 PF00005 ABC transporter JYK00_04795 PF03060 Nitronate monooxygenase JYK00_04800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JYK00_04800 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JYK00_04805 PF01551 Peptidase family M23 JYK00_04825 PF17862 AAA+ lid domain JYK00_04825 PF01434 Peptidase family M41 JYK00_04825 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_04830 PF01171 PP-loop family JYK00_04830 PF11734 TilS substrate C-terminal domain JYK00_04835 PF05343 M42 glutamyl aminopeptidase JYK00_04845 PF02673 Bacitracin resistance protein BacA JYK00_04850 PF01979 Amidohydrolase family JYK00_04865 PF02545 Maf-like protein JYK00_04870 PF04002 RadC-like JAB domain JYK00_04885 PF00535 Glycosyl transferase family 2 JYK00_04890 PF00535 Glycosyl transferase family 2 JYK00_04915 PF17820 PDZ domain JYK00_04915 PF03572 Peptidase family S41 JYK00_04915 PF01471 Putative peptidoglycan binding domain JYK00_04945 PF00227 Proteasome subunit JYK00_04950 PF03481 Putative GTP-binding controlling metal-binding JYK00_04950 PF01300 Telomere recombination JYK00_04960 PF00679 Elongation factor G C-terminus JYK00_04960 PF00009 Elongation factor Tu GTP binding domain JYK00_04960 PF06421 GTP-binding protein LepA C-terminus JYK00_04960 PF03144 Elongation factor Tu domain 2 JYK00_04965 PF08245 Mur ligase middle domain JYK00_04965 PF02875 Mur ligase family, glutamate ligase domain JYK00_04970 PF01134 Glucose inhibited division protein A JYK00_04975 PF02911 Formyl transferase, C-terminal domain JYK00_04975 PF00551 Formyl transferase JYK00_04980 PF00398 Ribosomal RNA adenine dimethylase JYK00_04990 PF02542 YgbB family JYK00_04995 PF00156 Phosphoribosyl transferase domain JYK00_05000 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_05000 PF00483 Nucleotidyl transferase JYK00_05005 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_05005 PF00483 Nucleotidyl transferase JYK00_05010 PF01791 DeoC/LacD family aldolase JYK00_05015 PF01668 SmpB protein JYK00_05020 PF02021 Uncharacterised protein family UPF0102 JYK00_05025 PF02686 Glu-tRNAGln amidotransferase C subunit JYK00_05030 PF02599 Global regulator protein family JYK00_05035 PF02623 FliW protein JYK00_05050 PF13684 Dihydroxyacetone kinase family JYK00_05050 PF02734 DAK2 domain JYK00_05060 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JYK00_05060 PF02779 Transketolase, pyrimidine binding domain JYK00_05060 PF02780 Transketolase, C-terminal domain JYK00_05065 PF02403 Seryl-tRNA synthetase N-terminal domain JYK00_05065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYK00_05070 PF01008 Initiation factor 2 subunit family JYK00_05080 PF08264 Anticodon-binding domain of tRNA JYK00_05080 PF00133 tRNA synthetases class I (I, L, M and V) JYK00_05080 PF13603 Leucyl-tRNA synthetase, Domain 2 JYK00_05080 PF09334 tRNA synthetases class I (M) JYK00_05085 PF04452 RNA methyltransferase JYK00_05095 PF01266 FAD dependent oxidoreductase JYK00_05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_05100 PF17806 Sarcosine oxidase A3 domain JYK00_05110 PF02142 MGS-like domain JYK00_05125 PF01336 OB-fold nucleic acid binding domain JYK00_05125 PF00152 tRNA synthetases class II (D, K and N) JYK00_05130 PF08245 Mur ligase middle domain JYK00_05130 PF01225 Mur ligase family, catalytic domain JYK00_05130 PF02875 Mur ligase family, glutamate ligase domain JYK00_05140 PF00953 Glycosyl transferase family 4 JYK00_05145 PF00953 Glycosyl transferase family 4 JYK00_05150 PF07136 Protein of unknown function (DUF1385) JYK00_05160 PF04232 Stage V sporulation protein S (SpoVS) JYK00_05165 PF02811 PHP domain JYK00_05165 PF14579 Helix-hairpin-helix motif JYK00_05165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JYK00_05165 PF07733 Bacterial DNA polymerase III alpha NTPase domain JYK00_05165 PF00929 Exonuclease JYK00_05170 PF02075 Crossover junction endodeoxyribonuclease RuvC JYK00_05180 PF00829 Ribosomal prokaryotic L21 protein JYK00_05185 PF04327 Cysteine protease Prp JYK00_05190 PF01016 Ribosomal L27 protein JYK00_05195 PF12822 ECF transporter, substrate-specific component JYK00_05200 PF00572 Ribosomal protein L13 JYK00_05205 PF00380 Ribosomal protein S9/S16 JYK00_05210 PF08275 DNA primase catalytic core, N-terminal domain JYK00_05210 PF01807 CHC2 zinc finger JYK00_05215 PF04545 Sigma-70, region 4 JYK00_05215 PF04542 Sigma-70 region 2 JYK00_05215 PF00140 Sigma-70 factor, region 1.2 JYK00_05215 PF03979 Sigma-70 factor, region 1.1 JYK00_05215 PF04539 Sigma-70 region 3 JYK00_05225 PF00830 Ribosomal L28 family JYK00_05230 PF00842 Alanine racemase, C-terminal domain JYK00_05230 PF01168 Alanine racemase, N-terminal domain JYK00_05235 PF01966 HD domain JYK00_05235 PF01336 OB-fold nucleic acid binding domain JYK00_05240 PF01131 DNA topoisomerase JYK00_05240 PF01751 Toprim domain JYK00_05245 PF00149 Calcineurin-like phosphoesterase JYK00_05250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JYK00_05255 PF03099 Biotin/lipoate A/B protein ligase family JYK00_05270 PF02261 Aspartate decarboxylase JYK00_05275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_05275 PF00512 His Kinase A (phospho-acceptor) domain JYK00_05275 PF00989 PAS fold JYK00_05280 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JYK00_05280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JYK00_05290 PF02645 Uncharacterised protein, DegV family COG1307 JYK00_05295 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JYK00_05300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYK00_05300 PF02874 ATP synthase alpha/beta family, beta-barrel domain JYK00_05305 PF00231 ATP synthase JYK00_05310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYK00_05310 PF02874 ATP synthase alpha/beta family, beta-barrel domain JYK00_05310 PF00306 ATP synthase alpha/beta chain, C terminal domain JYK00_05315 PF00213 ATP synthase delta (OSCP) subunit JYK00_05320 PF00430 ATP synthase B/B' CF(0) JYK00_05325 PF00137 ATP synthase subunit C JYK00_05330 PF00119 ATP synthase A chain JYK00_05345 PF01321 Creatinase/Prolidase N-terminal domain JYK00_05345 PF00557 Metallopeptidase family M24 JYK00_05355 PF03652 Holliday junction resolvase JYK00_05360 PF01368 DHH family JYK00_05360 PF17768 RecJ OB domain JYK00_05360 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JYK00_05360 PF02272 DHHA1 domain JYK00_05370 PF00166 Chaperonin 10 Kd subunit JYK00_05375 PF00118 TCP-1/cpn60 chaperonin family JYK00_05380 PF00005 ABC transporter JYK00_05385 PF01458 Uncharacterized protein family (UPF0051) JYK00_05390 PF01458 Uncharacterized protein family (UPF0051) JYK00_05395 PF00266 Aminotransferase class-V JYK00_05400 PF01592 NifU-like N terminal domain JYK00_05405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JYK00_05405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JYK00_05410 PF01268 Formate--tetrahydrofolate ligase JYK00_05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_05415 PF00672 HAMP domain JYK00_05415 PF00512 His Kinase A (phospho-acceptor) domain JYK00_05420 PF01430 Hsp33 protein JYK00_05430 PF01293 Phosphoenolpyruvate carboxykinase JYK00_05440 PF04227 Indigoidine synthase A like protein JYK00_05445 PF04963 Sigma-54 factor, core binding domain JYK00_05445 PF04552 Sigma-54, DNA binding domain JYK00_05445 PF00309 Sigma-54 factor, Activator interacting domain (AID) JYK00_05450 PF12850 Calcineurin-like phosphoesterase superfamily domain JYK00_05455 PF09186 Domain of unknown function (DUF1949) JYK00_05455 PF01205 Uncharacterized protein family UPF0029 JYK00_05460 PF00155 Aminotransferase class I and II JYK00_05465 PF00206 Lyase JYK00_05465 PF10397 Adenylosuccinate lyase C-terminus JYK00_05475 PF00082 Subtilase family JYK00_05480 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JYK00_05480 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JYK00_05480 PF01799 [2Fe-2S] binding domain JYK00_05485 PF00111 2Fe-2S iron-sulfur cluster binding domain JYK00_05485 PF01799 [2Fe-2S] binding domain JYK00_05500 PF01799 [2Fe-2S] binding domain JYK00_05500 PF00111 2Fe-2S iron-sulfur cluster binding domain JYK00_05505 PF00291 Pyridoxal-phosphate dependent enzyme JYK00_05520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYK00_05520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JYK00_05520 PF03129 Anticodon binding domain JYK00_05520 PF02824 TGS domain JYK00_05525 PF00072 Response regulator receiver domain JYK00_05525 PF01966 HD domain JYK00_05535 PF01145 SPFH domain / Band 7 family JYK00_05535 PF16200 C-terminal region of band_7 JYK00_05550 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JYK00_05550 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JYK00_05560 PF03808 Glycosyl transferase WecB/TagA/CpsF family JYK00_05565 PF02527 rRNA small subunit methyltransferase G JYK00_05570 PF01926 50S ribosome-binding GTPase JYK00_05570 PF12631 MnmE helical domain JYK00_05570 PF10396 GTP-binding protein TrmE N-terminus JYK00_05575 PF02583 Metal-sensitive transcriptional repressor JYK00_05585 PF00356 Bacterial regulatory proteins, lacI family JYK00_05595 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_05600 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_05605 PF13419 Haloacid dehalogenase-like hydrolase JYK00_05610 PF03636 Glycosyl hydrolase family 65, N-terminal domain JYK00_05610 PF03633 Glycosyl hydrolase family 65, C-terminal domain JYK00_05610 PF03632 Glycosyl hydrolase family 65 central catalytic domain JYK00_05615 PF01609 Transposase DDE domain JYK00_05630 PF00990 Diguanylate cyclase, GGDEF domain JYK00_05635 PF04324 BFD-like [2Fe-2S] binding domain JYK00_05635 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_05640 PF04324 BFD-like [2Fe-2S] binding domain JYK00_05640 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_05650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JYK00_05650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JYK00_05655 PF04309 Glycerol-3-phosphate responsive antiterminator JYK00_05670 PF00245 Alkaline phosphatase JYK00_05690 PF02424 ApbE family JYK00_05695 PF02575 YbaB/EbfC DNA-binding family JYK00_05710 PF18269 T3SS EscN ATPase C-terminal domain JYK00_05710 PF02874 ATP synthase alpha/beta family, beta-barrel domain JYK00_05710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYK00_05720 PF00871 Acetokinase family JYK00_05725 PF01116 Fructose-bisphosphate aldolase class-II JYK00_05740 PF02491 SHS2 domain inserted in FTSA JYK00_05745 PF00091 Tubulin/FtsZ family, GTPase domain JYK00_05745 PF12327 FtsZ family, C-terminal domain JYK00_05750 PF00437 Type II/IV secretion system protein JYK00_05760 PF01765 Ribosome recycling factor JYK00_05765 PF01255 Putative undecaprenyl diphosphate synthase JYK00_05775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JYK00_05775 PF02272 DHHA1 domain JYK00_05775 PF01411 tRNA synthetases class II (A) JYK00_05795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JYK00_05800 PF02719 Polysaccharide biosynthesis protein JYK00_05820 PF02350 UDP-N-acetylglucosamine 2-epimerase JYK00_05830 PF02660 Glycerol-3-phosphate acyltransferase JYK00_05850 PF03484 tRNA synthetase B5 domain JYK00_05850 PF03147 Ferredoxin-fold anticodon binding domain JYK00_05850 PF01588 Putative tRNA binding domain JYK00_05850 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JYK00_05850 PF03483 B3/4 domain JYK00_05855 PF07650 KH domain JYK00_05855 PF01926 50S ribosome-binding GTPase JYK00_05875 PF00392 Bacterial regulatory proteins, gntR family JYK00_05880 PF00005 ABC transporter JYK00_05885 PF12146 Serine aminopeptidase, S33 JYK00_05885 PF13026 Protein of unknown function (DUF3887) JYK00_05895 PF01906 Putative heavy-metal-binding JYK00_05900 PF00012 Hsp70 protein JYK00_05905 PF00011 Hsp20/alpha crystallin family JYK00_05920 PF00899 ThiF family JYK00_05925 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JYK00_05930 PF07690 Major Facilitator Superfamily JYK00_05945 PF13247 4Fe-4S dicluster domain JYK00_05945 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JYK00_05945 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_05950 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JYK00_05950 PF00175 Oxidoreductase NAD-binding domain JYK00_05950 PF00970 Oxidoreductase FAD-binding domain JYK00_05955 PF00294 pfkB family carbohydrate kinase JYK00_05960 PF00480 ROK family JYK00_06010 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase JYK00_06010 PF02310 B12 binding domain JYK00_06015 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit JYK00_06020 PF01624 MutS domain I JYK00_06020 PF05188 MutS domain II JYK00_06020 PF05192 MutS domain III JYK00_06020 PF00488 MutS domain V JYK00_06020 PF05190 MutS family domain IV JYK00_06030 PF01575 MaoC like domain JYK00_06035 PF12544 Lysine-2,3-aminomutase JYK00_06035 PF04055 Radical SAM superfamily JYK00_06045 PF05853 beta-keto acid cleavage enzyme JYK00_06050 PF03061 Thioesterase superfamily JYK00_06055 PF01144 Coenzyme A transferase JYK00_06060 PF01144 Coenzyme A transferase JYK00_06065 PF01551 Peptidase family M23 JYK00_06065 PF04225 Opacity-associated protein A LysM-like domain JYK00_06080 PF02590 Predicted SPOUT methyltransferase JYK00_06085 PF01725 Ham1 family JYK00_06095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JYK00_06100 PF02641 Uncharacterized ACR, COG1993 JYK00_06105 PF02926 THUMP domain JYK00_06105 PF01170 Putative RNA methylase family UPF0020 JYK00_06110 PF18693 TRAM domain JYK00_06110 PF00919 Uncharacterized protein family UPF0004 JYK00_06110 PF04055 Radical SAM superfamily JYK00_06120 PF01479 S4 domain JYK00_06120 PF00579 tRNA synthetases class I (W and Y) JYK00_06125 PF00395 S-layer homology domain JYK00_06135 PF00113 Enolase, C-terminal TIM barrel domain JYK00_06135 PF03952 Enolase, N-terminal domain JYK00_06140 PF02899 Phage integrase, N-terminal SAM-like domain JYK00_06140 PF00589 Phage integrase family JYK00_06145 PF00005 ABC transporter JYK00_06145 PF17755 UvrA DNA-binding domain JYK00_06145 PF17760 UvrA interaction domain JYK00_06155 PF01195 Peptidyl-tRNA hydrolase JYK00_06160 PF14693 Ribosomal protein TL5, C-terminal domain JYK00_06160 PF01386 Ribosomal L25p family JYK00_06165 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JYK00_06165 PF14572 Phosphoribosyl synthetase-associated domain JYK00_06170 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_06170 PF14602 Hexapeptide repeat of succinyl-transferase JYK00_06170 PF12804 MobA-like NTP transferase domain JYK00_06180 PF00391 PEP-utilising enzyme, mobile domain JYK00_06180 PF02896 PEP-utilising enzyme, TIM barrel domain JYK00_06180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JYK00_06185 PF00899 ThiF family JYK00_06195 PF10415 Fumarase C C-terminus JYK00_06195 PF00206 Lyase JYK00_06200 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JYK00_06200 PF01926 50S ribosome-binding GTPase JYK00_06210 PF00348 Polyprenyl synthetase JYK00_06220 PF00485 Phosphoribulokinase / Uridine kinase family JYK00_06225 PF01966 HD domain JYK00_06230 PF03309 Type III pantothenate kinase JYK00_06240 PF02163 Peptidase family M50 JYK00_06255 PF01177 Asp/Glu/Hydantoin racemase JYK00_06260 PF03668 P-loop ATPase protein family JYK00_06265 PF01933 Uncharacterised protein family UPF0052 JYK00_06270 PF14527 WhiA LAGLIDADG-like domain JYK00_06270 PF10298 WhiA N-terminal LAGLIDADG-like domain JYK00_06270 PF02650 WhiA C-terminal HTH domain JYK00_06275 PF03477 ATP cone domain JYK00_06280 PF01272 Transcription elongation factor, GreA/GreB, C-term JYK00_06280 PF03449 Transcription elongation factor, N-terminal JYK00_06285 PF01336 OB-fold nucleic acid binding domain JYK00_06285 PF00152 tRNA synthetases class II (D, K and N) JYK00_06295 PF08439 Oligopeptidase F JYK00_06295 PF01432 Peptidase family M3 JYK00_06300 PF01554 MatE JYK00_06305 PF00248 Aldo/keto reductase family JYK00_06310 PF02073 Thermophilic metalloprotease (M29) JYK00_06320 PF00005 ABC transporter JYK00_06330 PF16193 AAA C-terminal domain JYK00_06330 PF01661 Macro domain JYK00_06330 PF12002 MgsA AAA+ ATPase C terminal JYK00_06330 PF05496 Holliday junction DNA helicase RuvB P-loop domain JYK00_06335 PF01661 Macro domain JYK00_06335 PF12002 MgsA AAA+ ATPase C terminal JYK00_06335 PF16193 AAA C-terminal domain JYK00_06335 PF05496 Holliday junction DNA helicase RuvB P-loop domain JYK00_06340 PF16363 GDP-mannose 4,6 dehydratase JYK00_06350 PF03167 Uracil DNA glycosylase superfamily JYK00_06370 PF01695 IstB-like ATP binding protein JYK00_06375 PF00665 Integrase core domain JYK00_06385 PF00664 ABC transporter transmembrane region JYK00_06385 PF00005 ABC transporter JYK00_06420 PF00107 Zinc-binding dehydrogenase JYK00_06420 PF08240 Alcohol dehydrogenase GroES-like domain JYK00_06425 PF00155 Aminotransferase class I and II JYK00_06440 PF00403 Heavy-metal-associated domain JYK00_06445 PF01022 Bacterial regulatory protein, arsR family JYK00_06460 PF00132 Bacterial transferase hexapeptide (six repeats) JYK00_06460 PF14602 Hexapeptide repeat of succinyl-transferase JYK00_06460 PF12804 MobA-like NTP transferase domain JYK00_06465 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JYK00_06465 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JYK00_06470 PF01479 S4 domain JYK00_06475 PF13185 GAF domain JYK00_06480 PF00990 Diguanylate cyclase, GGDEF domain JYK00_06485 PF00664 ABC transporter transmembrane region JYK00_06485 PF00005 ABC transporter JYK00_06500 PF00005 ABC transporter JYK00_06500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_06505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_06505 PF00005 ABC transporter JYK00_06510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JYK00_06515 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_06520 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_06520 PF12911 N-terminal TM domain of oligopeptide transport permease C JYK00_06545 PF03600 Citrate transporter JYK00_06555 PF07498 Rho termination factor, N-terminal domain JYK00_06555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYK00_06555 PF07497 Rho termination factor, RNA-binding domain JYK00_06565 PF03462 PCRF domain JYK00_06565 PF00472 RF-1 domain JYK00_06570 PF00437 Type II/IV secretion system protein JYK00_06575 PF12169 DNA polymerase III subunits gamma and tau domain III JYK00_06595 PF01734 Patatin-like phospholipase JYK00_06600 PF01261 Xylose isomerase-like TIM barrel JYK00_06605 PF13673 Acetyltransferase (GNAT) domain JYK00_06610 PF00795 Carbon-nitrogen hydrolase JYK00_06610 PF02540 NAD synthase JYK00_06630 PF01790 Prolipoprotein diacylglyceryl transferase JYK00_06635 PF01676 Metalloenzyme superfamily JYK00_06635 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase JYK00_06645 PF01475 Ferric uptake regulator family JYK00_06650 PF13184 NusA-like KH domain JYK00_06650 PF00575 S1 RNA binding domain JYK00_06650 PF08529 NusA N-terminal domain JYK00_06655 PF02576 RimP N-terminal domain JYK00_06655 PF17384 RimP C-terminal SH3 domain JYK00_06670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JYK00_06675 PF05670 NFACT protein RNA binding domain JYK00_06680 PF17757 UvrB interaction domain JYK00_06680 PF00271 Helicase conserved C-terminal domain JYK00_06680 PF04851 Type III restriction enzyme, res subunit JYK00_06680 PF02151 UvrB/uvrC motif JYK00_06680 PF12344 Ultra-violet resistance protein B JYK00_06685 PF08448 PAS fold JYK00_06685 PF00990 Diguanylate cyclase, GGDEF domain JYK00_06690 PF01121 Dephospho-CoA kinase JYK00_06700 PF00342 Phosphoglucose isomerase JYK00_06705 PF00156 Phosphoribosyl transferase domain JYK00_06715 PF00591 Glycosyl transferase family, a/b domain JYK00_06715 PF02885 Glycosyl transferase family, helical bundle domain JYK00_06715 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JYK00_06720 PF00672 HAMP domain JYK00_06720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_06720 PF18698 Histidine kinase sensor domain JYK00_06720 PF00512 His Kinase A (phospho-acceptor) domain JYK00_06720 PF00989 PAS fold JYK00_06725 PF00072 Response regulator receiver domain JYK00_06725 PF00486 Transcriptional regulatory protein, C terminal JYK00_06730 PF03030 Inorganic H+ pyrophosphatase JYK00_06735 PF02361 Cobalt transport protein JYK00_06740 PF00294 pfkB family carbohydrate kinase JYK00_06745 PF00561 alpha/beta hydrolase fold JYK00_06750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JYK00_06750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JYK00_06755 PF08359 YsiA-like protein, C-terminal region JYK00_06755 PF00440 Bacterial regulatory proteins, tetR family JYK00_06760 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JYK00_06760 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JYK00_06765 PF00108 Thiolase, N-terminal domain JYK00_06765 PF02803 Thiolase, C-terminal domain JYK00_06780 PF00005 ABC transporter JYK00_06780 PF12399 Branched-chain amino acid ATP-binding cassette transporter JYK00_06785 PF00005 ABC transporter JYK00_06795 PF00561 alpha/beta hydrolase fold JYK00_06795 PF08386 TAP-like protein JYK00_06800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JYK00_06800 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_06810 PF00294 pfkB family carbohydrate kinase JYK00_06815 PF00356 Bacterial regulatory proteins, lacI family JYK00_06820 PF13407 Periplasmic binding protein domain JYK00_06825 PF02653 Branched-chain amino acid transport system / permease component JYK00_06830 PF00005 ABC transporter JYK00_06835 PF05025 RbsD / FucU transport protein family JYK00_06840 PF00583 Acetyltransferase (GNAT) family JYK00_06850 PF00072 Response regulator receiver domain JYK00_06855 PF00209 Sodium:neurotransmitter symporter family JYK00_06865 PF01594 AI-2E family transporter JYK00_06870 PF13335 Magnesium chelatase, subunit ChlI C-terminal JYK00_06870 PF01078 Magnesium chelatase, subunit ChlI JYK00_06875 PF03819 MazG nucleotide pyrophosphohydrolase domain JYK00_06880 PF00588 SpoU rRNA Methylase family JYK00_06880 PF08032 RNA 2'-O ribose methyltransferase substrate binding JYK00_06885 PF00072 Response regulator receiver domain JYK00_06885 PF00486 Transcriptional regulatory protein, C terminal JYK00_06895 PF01189 16S rRNA methyltransferase RsmB/F JYK00_06895 PF01029 NusB family JYK00_06900 PF00575 S1 RNA binding domain JYK00_06900 PF00773 RNB domain JYK00_06900 PF08206 Ribonuclease B OB domain JYK00_06900 PF17876 Cold shock domain JYK00_06910 PF05958 tRNA (Uracil-5-)-methyltransferase JYK00_06920 PF01895 PhoU domain JYK00_06925 PF01513 ATP-NAD kinase JYK00_06930 PF02325 YGGT family JYK00_06935 PF01168 Alanine racemase, N-terminal domain JYK00_06940 PF05496 Holliday junction DNA helicase RuvB P-loop domain JYK00_06940 PF05491 RuvB C-terminal winged helix domain JYK00_06940 PF17864 RuvB AAA lid domain JYK00_06945 PF00698 Acyl transferase domain JYK00_06950 PF02632 BioY family JYK00_06955 PF03060 Nitronate monooxygenase JYK00_06960 PF07977 FabA-like domain JYK00_06965 PF02801 Beta-ketoacyl synthase, C-terminal domain JYK00_06965 PF00109 Beta-ketoacyl synthase, N-terminal domain JYK00_06975 PF00849 RNA pseudouridylate synthase JYK00_06975 PF01479 S4 domain JYK00_07000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JYK00_07000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JYK00_07005 PF00162 Phosphoglycerate kinase JYK00_07010 PF00121 Triosephosphate isomerase JYK00_07010 PF00162 Phosphoglycerate kinase JYK00_07015 PF00072 Response regulator receiver domain JYK00_07015 PF00486 Transcriptional regulatory protein, C terminal JYK00_07020 PF02080 TrkA-C domain JYK00_07020 PF02254 TrkA-N domain JYK00_07025 PF00999 Sodium/hydrogen exchanger family JYK00_07025 PF02080 TrkA-C domain JYK00_07025 PF02254 TrkA-N domain JYK00_07070 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_07075 PF00857 Isochorismatase family JYK00_07080 PF04055 Radical SAM superfamily JYK00_07085 PF00270 DEAD/DEAH box helicase JYK00_07085 PF17191 RecG wedge domain JYK00_07085 PF00271 Helicase conserved C-terminal domain JYK00_07090 PF00005 ABC transporter JYK00_07095 PF04263 Thiamin pyrophosphokinase, catalytic domain JYK00_07095 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain JYK00_07100 PF13288 DXP reductoisomerase C-terminal domain JYK00_07100 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JYK00_07100 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JYK00_07105 PF01497 Periplasmic binding protein JYK00_07110 PF01032 FecCD transport family JYK00_07120 PF03979 Sigma-70 factor, region 1.1 JYK00_07120 PF00140 Sigma-70 factor, region 1.2 JYK00_07120 PF04542 Sigma-70 region 2 JYK00_07120 PF04539 Sigma-70 region 3 JYK00_07120 PF04545 Sigma-70, region 4 JYK00_07135 PF01609 Transposase DDE domain JYK00_07140 PF00365 Phosphofructokinase JYK00_07145 PF07969 Amidohydrolase family JYK00_07155 PF03600 Citrate transporter JYK00_07160 PF01699 Sodium/calcium exchanger protein JYK00_07165 PF00571 CBS domain JYK00_07165 PF00478 IMP dehydrogenase / GMP reductase domain JYK00_07170 PF00149 Calcineurin-like phosphoesterase JYK00_07175 PF00881 Nitroreductase family JYK00_07180 PF00672 HAMP domain JYK00_07180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_07180 PF17200 Single Cache domain 2 JYK00_07185 PF00128 Alpha amylase, catalytic domain JYK00_07190 PF08241 Methyltransferase domain JYK00_07195 PF00892 EamA-like transporter family JYK00_07205 PF03063 Prismane/CO dehydrogenase family JYK00_07210 PF00325 Bacterial regulatory proteins, crp family JYK00_07210 PF00027 Cyclic nucleotide-binding domain JYK00_07215 PF00120 Glutamine synthetase, catalytic domain JYK00_07215 PF03951 Glutamine synthetase, beta-Grasp domain JYK00_07225 PF02254 TrkA-N domain JYK00_07225 PF00999 Sodium/hydrogen exchanger family JYK00_07240 PF02096 60Kd inner membrane protein JYK00_07245 PF01809 Putative membrane protein insertion efficiency factor JYK00_07250 PF00825 Ribonuclease P JYK00_07255 PF00468 Ribosomal protein L34 JYK00_07260 PF01966 HD domain JYK00_07275 PF12833 Helix-turn-helix domain JYK00_07275 PF02311 AraC-like ligand binding domain JYK00_07280 PF01497 Periplasmic binding protein JYK00_07285 PF01032 FecCD transport family JYK00_07290 PF00005 ABC transporter JYK00_07295 PF04055 Radical SAM superfamily JYK00_07305 PF00990 Diguanylate cyclase, GGDEF domain JYK00_07320 PF01609 Transposase DDE domain JYK00_07325 PF00872 Transposase, Mutator family JYK00_07340 PF00664 ABC transporter transmembrane region JYK00_07340 PF00005 ABC transporter JYK00_07355 PF06672 Protein of unknown function (DUF1175) JYK00_07365 PF00207 Alpha-2-macroglobulin family JYK00_07365 PF01835 MG2 domain JYK00_07365 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JYK00_07365 PF07678 A-macroglobulin TED domain JYK00_07365 PF07703 Alpha-2-macroglobulin bait region domain JYK00_07380 PF00696 Amino acid kinase family JYK00_07380 PF01842 ACT domain JYK00_07380 PF13840 ACT domain JYK00_07395 PF02219 Methylenetetrahydrofolate reductase JYK00_07405 PF02310 B12 binding domain JYK00_07405 PF02607 B12 binding domain JYK00_07405 PF02965 Vitamin B12 dependent methionine synthase, activation domain JYK00_07405 PF00809 Pterin binding enzyme JYK00_07405 PF02574 Homocysteine S-methyltransferase JYK00_07425 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_07430 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_07435 PF17912 MalK OB fold domain JYK00_07435 PF00005 ABC transporter JYK00_07435 PF03459 TOBE domain JYK00_07440 PF00534 Glycosyl transferases group 1 JYK00_07445 PF01695 IstB-like ATP binding protein JYK00_07450 PF00665 Integrase core domain JYK00_07455 PF00085 Thioredoxin JYK00_07455 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_07460 PF03600 Citrate transporter JYK00_07465 PF00465 Iron-containing alcohol dehydrogenase JYK00_07475 PF01546 Peptidase family M20/M25/M40 JYK00_07495 PF00348 Polyprenyl synthetase JYK00_07525 PF02578 Multi-copper polyphenol oxidoreductase laccase JYK00_07560 PF01555 DNA methylase JYK00_07575 PF07728 AAA domain (dynein-related subfamily) JYK00_07575 PF12102 Domain of unknown function (DUF3578) JYK00_07600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_07600 PF00005 ABC transporter JYK00_07605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_07605 PF00005 ABC transporter JYK00_07610 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_07610 PF12911 N-terminal TM domain of oligopeptide transport permease C JYK00_07615 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_07620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JYK00_07645 PF05343 M42 glutamyl aminopeptidase JYK00_07660 PF00583 Acetyltransferase (GNAT) family JYK00_07675 PF01923 Cobalamin adenosyltransferase JYK00_07680 PF00221 Aromatic amino acid lyase JYK00_07690 PF01649 Ribosomal protein S20 JYK00_07695 PF00438 S-adenosylmethionine synthetase, N-terminal domain JYK00_07695 PF02772 S-adenosylmethionine synthetase, central domain JYK00_07695 PF02773 S-adenosylmethionine synthetase, C-terminal domain JYK00_07710 PF01926 50S ribosome-binding GTPase JYK00_07710 PF13167 GTP-binding GTPase N-terminal JYK00_07710 PF16360 GTP-binding GTPase Middle Region JYK00_07715 PF17209 Hfq protein JYK00_07730 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JYK00_07730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYK00_07730 PF02824 TGS domain JYK00_07730 PF03129 Anticodon binding domain JYK00_07735 PF10150 Ribonuclease E/G family JYK00_07735 PF00575 S1 RNA binding domain JYK00_07745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JYK00_07760 PF01339 CheB methylesterase JYK00_07760 PF00072 Response regulator receiver domain JYK00_07765 PF00395 S-layer homology domain JYK00_07770 PF00456 Transketolase, thiamine diphosphate binding domain JYK00_07770 PF02780 Transketolase, C-terminal domain JYK00_07770 PF02779 Transketolase, pyrimidine binding domain JYK00_07775 PF02574 Homocysteine S-methyltransferase JYK00_07775 PF02219 Methylenetetrahydrofolate reductase JYK00_07795 PF08241 Methyltransferase domain JYK00_07805 PF01613 Flavin reductase like domain JYK00_07810 PF05175 Methyltransferase small domain JYK00_07815 PF00005 ABC transporter JYK00_07820 PF00482 Type II secretion system (T2SS), protein F JYK00_07850 PF03958 Bacterial type II/III secretion system short domain JYK00_07850 PF00263 Bacterial type II and III secretion system protein JYK00_07855 PF01875 Memo-like protein JYK00_07860 PF10531 SLBB domain JYK00_07865 PF03793 PASTA domain JYK00_07865 PF00905 Penicillin binding protein transpeptidase domain JYK00_07865 PF03717 Penicillin-binding Protein dimerisation domain JYK00_07875 PF01795 MraW methylase family JYK00_07880 PF01979 Amidohydrolase family JYK00_07885 PF00291 Pyridoxal-phosphate dependent enzyme JYK00_07890 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JYK00_07890 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JYK00_07895 PF13382 Adenine deaminase C-terminal domain JYK00_07895 PF01979 Amidohydrolase family JYK00_07900 PF00700 Bacterial flagellin C-terminal helical region JYK00_07900 PF00669 Bacterial flagellin N-terminal helical region JYK00_07905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_07905 PF00005 ABC transporter JYK00_07910 PF00005 ABC transporter JYK00_07910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYK00_07915 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_07915 PF12911 N-terminal TM domain of oligopeptide transport permease C JYK00_07920 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_07925 PF01541 GIY-YIG catalytic domain JYK00_07925 PF02151 UvrB/uvrC motif JYK00_07925 PF08459 UvrC Helix-hairpin-helix N-terminal JYK00_07935 PF01597 Glycine cleavage H-protein JYK00_07940 PF04023 FeoA domain JYK00_07940 PF07664 Ferrous iron transport protein B C terminus JYK00_07940 PF17910 FeoB cytosolic helical domain JYK00_07940 PF02421 Ferrous iron transport protein B JYK00_07940 PF07670 Nucleoside recognition JYK00_07950 PF00753 Metallo-beta-lactamase superfamily JYK00_07950 PF00301 Rubredoxin JYK00_07950 PF00258 Flavodoxin JYK00_07955 PF02608 ABC transporter substrate-binding protein PnrA-like JYK00_07960 PF01926 50S ribosome-binding GTPase JYK00_07960 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JYK00_07965 PF00575 S1 RNA binding domain JYK00_07970 PF02401 LytB protein JYK00_07975 PF02224 Cytidylate kinase JYK00_07980 PF01740 STAS domain JYK00_07985 PF00152 tRNA synthetases class II (D, K and N) JYK00_07985 PF02938 GAD domain JYK00_07985 PF01336 OB-fold nucleic acid binding domain JYK00_07990 PF00923 Transaldolase/Fructose-6-phosphate aldolase JYK00_07995 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08000 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08005 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_08005 PF07724 AAA domain (Cdc48 subfamily) JYK00_08005 PF10431 C-terminal, D2-small domain, of ClpB protein JYK00_08010 PF00072 Response regulator receiver domain JYK00_08010 PF01966 HD domain JYK00_08015 PF00675 Insulinase (Peptidase family M16) JYK00_08015 PF05193 Peptidase M16 inactive domain JYK00_08020 PF00013 KH domain JYK00_08020 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JYK00_08020 PF01138 3' exoribonuclease family, domain 1 JYK00_08020 PF00575 S1 RNA binding domain JYK00_08020 PF03725 3' exoribonuclease family, domain 2 JYK00_08025 PF16338 Domain of unknown function (DUF4968) JYK00_08025 PF17137 Domain of unknown function (DUF5110) JYK00_08025 PF13802 Galactose mutarotase-like JYK00_08025 PF01055 Glycosyl hydrolases family 31 JYK00_08030 PF02569 Pantoate-beta-alanine ligase JYK00_08035 PF18255 DNA processing protein A sterile alpha motif domain JYK00_08035 PF02481 DNA recombination-mediator protein A JYK00_08040 PF04060 Putative Fe-S cluster JYK00_08045 PF03023 Lipid II flippase MurJ JYK00_08050 PF02237 Biotin protein ligase C terminal domain JYK00_08050 PF03099 Biotin/lipoate A/B protein ligase family JYK00_08050 PF08279 HTH domain JYK00_08060 PF00035 Double-stranded RNA binding motif JYK00_08060 PF14622 Ribonuclease-III-like JYK00_08075 PF02256 Iron hydrogenase small subunit JYK00_08075 PF00037 4Fe-4S binding domain JYK00_08075 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JYK00_08075 PF02906 Iron only hydrogenase large subunit, C-terminal domain JYK00_08085 PF04055 Radical SAM superfamily JYK00_08085 PF18693 TRAM domain JYK00_08085 PF00919 Uncharacterized protein family UPF0004 JYK00_08095 PF04055 Radical SAM superfamily JYK00_08095 PF06968 Biotin and Thiamin Synthesis associated domain JYK00_08100 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JYK00_08100 PF05221 S-adenosyl-L-homocysteine hydrolase JYK00_08110 PF01053 Cys/Met metabolism PLP-dependent enzyme JYK00_08115 PF00291 Pyridoxal-phosphate dependent enzyme JYK00_08115 PF00571 CBS domain JYK00_08140 PF00440 Bacterial regulatory proteins, tetR family JYK00_08140 PF18665 Tetracyclin repressor-like, C-terminal domain JYK00_08145 PF00589 Phage integrase family JYK00_08160 PF00392 Bacterial regulatory proteins, gntR family JYK00_08165 PF04041 beta-1,4-mannooligosaccharide phosphorylase JYK00_08170 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08175 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_08205 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08210 PF00343 Carbohydrate phosphorylase JYK00_08235 PF11700 Vacuole effluxer Atg22 like JYK00_08240 PF00301 Rubredoxin JYK00_08245 PF13180 PDZ domain JYK00_08255 PF06750 Bacterial Peptidase A24 N-terminal domain JYK00_08255 PF01478 Type IV leader peptidase family JYK00_08260 PF01551 Peptidase family M23 JYK00_08260 PF10145 Phage-related minor tail protein JYK00_08260 PF01464 Transglycosylase SLT domain JYK00_08265 PF01256 Carbohydrate kinase JYK00_08265 PF03853 YjeF-related protein N-terminus JYK00_08275 PF02390 Putative methyltransferase JYK00_08280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JYK00_08280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JYK00_08295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_08300 PF00072 Response regulator receiver domain JYK00_08305 PF03313 Serine dehydratase alpha chain JYK00_08315 PF03315 Serine dehydratase beta chain JYK00_08320 PF03313 Serine dehydratase alpha chain JYK00_08330 PF09210 Domain of unknown function (DUF1957) JYK00_08330 PF03065 Glycosyl hydrolase family 57 JYK00_08335 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JYK00_08345 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JYK00_08345 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JYK00_08350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JYK00_08355 PF00990 Diguanylate cyclase, GGDEF domain JYK00_08365 PF01546 Peptidase family M20/M25/M40 JYK00_08365 PF07687 Peptidase dimerisation domain JYK00_08370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JYK00_08370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JYK00_08375 PF01979 Amidohydrolase family JYK00_08380 PF01979 Amidohydrolase family JYK00_08385 PF01180 Dihydroorotate dehydrogenase JYK00_08390 PF00990 Diguanylate cyclase, GGDEF domain JYK00_08395 PF00636 Ribonuclease III domain JYK00_08405 PF01523 Putative modulator of DNA gyrase JYK00_08410 PF01523 Putative modulator of DNA gyrase JYK00_08415 PF00834 Ribulose-phosphate 3 epimerase family JYK00_08420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JYK00_08420 PF14579 Helix-hairpin-helix motif JYK00_08420 PF07733 Bacterial DNA polymerase III alpha NTPase domain JYK00_08440 PF03749 Sugar fermentation stimulation protein RE domain JYK00_08440 PF17746 SfsA N-terminal OB domain JYK00_08445 PF02978 Signal peptide binding domain JYK00_08445 PF02881 SRP54-type protein, helical bundle domain JYK00_08445 PF00448 SRP54-type protein, GTPase domain JYK00_08450 PF00886 Ribosomal protein S16 JYK00_08460 PF01782 RimM N-terminal domain JYK00_08460 PF05239 PRC-barrel domain JYK00_08465 PF01746 tRNA (Guanine-1)-methyltransferase JYK00_08470 PF09936 SAM-dependent RNA methyltransferase JYK00_08475 PF01245 Ribosomal protein L19 JYK00_08480 PF10502 Signal peptidase, peptidase S26 JYK00_08485 PF00990 Diguanylate cyclase, GGDEF domain JYK00_08485 PF00563 EAL domain JYK00_08485 PF03707 Bacterial signalling protein N terminal repeat JYK00_08505 PF01636 Phosphotransferase enzyme family JYK00_08515 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYK00_08515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JYK00_08520 PF00672 HAMP domain JYK00_08520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_08520 PF17200 Single Cache domain 2 JYK00_08525 PF13378 Enolase C-terminal domain-like JYK00_08525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JYK00_08535 PF00686 Starch binding domain JYK00_08535 PF00128 Alpha amylase, catalytic domain JYK00_08545 PF01695 IstB-like ATP binding protein JYK00_08550 PF00665 Integrase core domain JYK00_08575 PF00672 HAMP domain JYK00_08575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_08575 PF17200 Single Cache domain 2 JYK00_08580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JYK00_08580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JYK00_08595 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08600 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08605 PF13416 Bacterial extracellular solute-binding protein JYK00_08610 PF01865 Protein of unknown function DUF47 JYK00_08615 PF01384 Phosphate transporter family JYK00_08625 PF00027 Cyclic nucleotide-binding domain JYK00_08625 PF01734 Patatin-like phospholipase JYK00_08630 PF01425 Amidase JYK00_08635 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08640 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08645 PF01547 Bacterial extracellular solute-binding protein JYK00_08650 PF00534 Glycosyl transferases group 1 JYK00_08660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_08660 PF00512 His Kinase A (phospho-acceptor) domain JYK00_08660 PF00989 PAS fold JYK00_08660 PF16736 Single Cache-like JYK00_08665 PF00486 Transcriptional regulatory protein, C terminal JYK00_08665 PF00072 Response regulator receiver domain JYK00_08670 PF01895 PhoU domain JYK00_08675 PF00005 ABC transporter JYK00_08680 PF00528 Binding-protein-dependent transport system inner membrane component JYK00_08690 PF12849 PBP superfamily domain JYK00_08705 PF05343 M42 glutamyl aminopeptidase JYK00_08710 PF05343 M42 glutamyl aminopeptidase JYK00_08715 PF01192 RNA polymerase Rpb6 JYK00_08720 PF00625 Guanylate kinase JYK00_08725 PF04025 Domain of unknown function (DUF370) JYK00_08760 PF00871 Acetokinase family JYK00_08765 PF01515 Phosphate acetyl/butaryl transferase JYK00_08770 PF00871 Acetokinase family JYK00_08775 PF00155 Aminotransferase class I and II JYK00_08780 PF00266 Aminotransferase class-V JYK00_08785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYK00_08785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYK00_08800 PF00550 Phosphopantetheine attachment site JYK00_08810 PF01238 Phosphomannose isomerase type I JYK00_08830 PF01047 MarR family JYK00_08835 PF02127 Aminopeptidase I zinc metalloprotease (M18) JYK00_08840 PF01565 FAD binding domain JYK00_08840 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JYK00_08845 PF00990 Diguanylate cyclase, GGDEF domain JYK00_08845 PF17158 Membrane-associated sensor, integral membrane domain JYK00_08855 PF01048 Phosphorylase superfamily JYK00_08860 PF01168 Alanine racemase, N-terminal domain JYK00_08870 PF02547 Queuosine biosynthesis protein JYK00_08875 PF00312 Ribosomal protein S15 JYK00_08880 PF05343 M42 glutamyl aminopeptidase JYK00_08885 PF01925 Sulfite exporter TauE/SafE JYK00_08890 PF02465 Flagellar hook-associated protein 2 N-terminus JYK00_08890 PF07195 Flagellar hook-associated protein 2 C-terminus JYK00_08890 PF07196 Flagellin hook IN motif JYK00_08900 PF02033 Ribosome-binding factor A JYK00_08905 PF08668 HDOD domain JYK00_08910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYK00_08910 PF18698 Histidine kinase sensor domain JYK00_08910 PF00512 His Kinase A (phospho-acceptor) domain JYK00_08910 PF00672 HAMP domain JYK00_08915 PF00750 tRNA synthetases class I (R) JYK00_08915 PF05746 DALR anticodon binding domain JYK00_08915 PF03485 Arginyl tRNA synthetase N terminal domain JYK00_08920 PF01926 50S ribosome-binding GTPase JYK00_08925 PF00004 ATPase family associated with various cellular activities (AAA) JYK00_08925 PF02190 ATP-dependent protease La (LON) substrate-binding domain JYK00_08925 PF05362 Lon protease (S16) C-terminal proteolytic domain JYK00_08930 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JYK00_08935 PF11146 Protein of unknown function (DUF2905) JYK00_08940 PF04468 PSP1 C-terminal conserved region JYK00_08960 PF00771 FHIPEP family JYK00_08965 PF00448 SRP54-type protein, GTPase domain JYK00_08970 PF10609 NUBPL iron-transfer P-loop NTPase JYK00_08985 PF04509 CheC-like family JYK00_08990 PF03975 CheD chemotactic sensory transduction JYK00_08995 PF04545 Sigma-70, region 4 JYK00_08995 PF04539 Sigma-70 region 3 JYK00_08995 PF04542 Sigma-70 region 2 JYK00_09030 PF00571 CBS domain JYK00_09030 PF01368 DHH family JYK00_09030 PF02272 DHHA1 domain JYK00_09030 PF01743 Poly A polymerase head domain JYK00_09030 PF12627 Probable RNA and SrmB- binding site of polymerase A JYK00_09045 PF03948 Ribosomal protein L9, C-terminal domain JYK00_09045 PF01281 Ribosomal protein L9, N-terminal domain JYK00_09050 PF17827 PrmC N-terminal domain JYK00_09050 PF05175 Methyltransferase small domain JYK00_09055 PF01883 Iron-sulfur cluster assembly protein JYK00_09060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYK00_09060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYK00_09060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYK00_09060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYK00_09070 PF01702 Queuine tRNA-ribosyltransferase JYK00_09090 PF03129 Anticodon binding domain JYK00_09090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYK00_09090 PF04073 Aminoacyl-tRNA editing domain JYK00_09095 PF09190 DALR domain JYK00_09095 PF01406 tRNA synthetases class I (C) catalytic domain JYK00_09100 PF00749 tRNA synthetases class I (E and Q), catalytic domain JYK00_09110 PF00919 Uncharacterized protein family UPF0004 JYK00_09110 PF04055 Radical SAM superfamily JYK00_09110 PF01938 TRAM domain JYK00_09115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JYK00_09115 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JYK00_09120 PF00857 Isochorismatase family JYK00_09125 PF01545 Cation efflux family JYK00_09125 PF16916 Dimerisation domain of Zinc Transporter JYK00_09135 PF07963 Prokaryotic N-terminal methylation motif JYK00_09135 PF00114 Pilin (bacterial filament) JYK00_09145 PF00534 Glycosyl transferases group 1 JYK00_09145 PF08323 Starch synthase catalytic domain JYK00_09155 PF00158 Sigma-54 interaction domain JYK00_09155 PF00989 PAS fold JYK00_09155 PF02954 Bacterial regulatory protein, Fis family JYK00_09160 PF01894 Uncharacterised protein family UPF0047 JYK00_09165 PF07478 D-ala D-ala ligase C-terminus JYK00_09165 PF01820 D-ala D-ala ligase N-terminus JYK00_09175 PF02558 Ketopantoate reductase PanE/ApbA JYK00_09175 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain JYK00_09180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYK00_09180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYK00_09185 PF01384 Phosphate transporter family JYK00_09190 PF02540 NAD synthase JYK00_09195 PF00226 DnaJ domain JYK00_09195 PF01556 DnaJ C terminal domain JYK00_09195 PF00684 DnaJ central domain JYK00_09200 PF01025 GrpE JYK00_09205 PF01628 HrcA protein C terminal domain JYK00_09215 PF07748 Glycosyl hydrolases family 38 C-terminal domain JYK00_09215 PF01074 Glycosyl hydrolases family 38 N-terminal domain JYK00_09215 PF09261 Alpha mannosidase middle domain JYK00_09220 PF04055 Radical SAM superfamily JYK00_09230 PF01808 AICARFT/IMPCHase bienzyme JYK00_09230 PF02142 MGS-like domain JYK00_09240 PF01312 FlhB HrpN YscU SpaS Family JYK00_09250 PF03462 PCRF domain JYK00_09250 PF00472 RF-1 domain JYK00_09255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JYK00_09280 PF02881 SRP54-type protein, helical bundle domain JYK00_09280 PF00448 SRP54-type protein, GTPase domain JYK00_09290 PF06725 3D domain JYK00_09295 PF02082 Transcriptional regulator JYK00_09305 PF00156 Phosphoribosyl transferase domain JYK00_09310 PF03816 Cell envelope-related transcriptional attenuator domain JYK00_09315 PF04493 Endonuclease V JYK00_09320 PF13649 Methyltransferase domain JYK00_09325 PF00583 Acetyltransferase (GNAT) family JYK00_09335 PF14600 Cellulose-binding domain JYK00_09335 PF00150 Cellulase (glycosyl hydrolase family 5) JYK00_09355 PF12697 Alpha/beta hydrolase family JYK00_09370 PF00719 Inorganic pyrophosphatase JYK00_09375 PF13649 Methyltransferase domain JYK00_09385 PF00485 Phosphoribulokinase / Uridine kinase family JYK00_09395 PF00962 Adenosine/AMP deaminase JYK00_09415 PF00005 ABC transporter JYK00_09415 PF00664 ABC transporter transmembrane region JYK00_09420 PF00899 ThiF family JYK00_09425 PF08543 Phosphomethylpyrimidine kinase JYK00_09425 PF10120 Thiamine-phosphate synthase JYK00_09430 PF01964 Radical SAM ThiC family JYK00_09440 PF05690 Thiazole biosynthesis protein ThiG JYK00_09460 PF09827 CRISPR associated protein Cas2 JYK00_09505 PF07690 Major Facilitator Superfamily JYK00_09510 PF02829 3H domain JYK00_09510 PF08279 HTH domain JYK00_09515 PF10672 S-adenosylmethionine-dependent methyltransferase JYK00_09515 PF02926 THUMP domain JYK00_09515 PF01170 Putative RNA methylase family UPF0020 JYK00_09520 PF17284 Spermidine synthase tetramerisation domain JYK00_09525 PF02675 S-adenosylmethionine decarboxylase JYK00_09530 PF01381 Helix-turn-helix JYK00_09530 PF07883 Cupin domain JYK00_09535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYK00_09535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYK00_09535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYK00_09535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYK00_09545 PF04474 Protein of unknown function (DUF554) JYK00_09555 PF02743 Cache domain JYK00_09555 PF00672 HAMP domain JYK00_09555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYK00_09570 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JYK00_09570 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JYK00_09570 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JYK00_09580 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JYK00_09585 PF12169 DNA polymerase III subunits gamma and tau domain III JYK00_09590 PF00005 ABC transporter JYK00_09595 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JYK00_09600 PF00365 Phosphofructokinase JYK00_09605 PF03030 Inorganic H+ pyrophosphatase JYK00_09610 PF07549 SecD/SecF GG Motif JYK00_09610 PF02355 Protein export membrane protein JYK00_09615 PF02355 Protein export membrane protein JYK00_09615 PF07549 SecD/SecF GG Motif JYK00_09620 PF02699 Preprotein translocase subunit JYK00_09625 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JYK00_09625 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JYK00_09635 PF02511 Thymidylate synthase complementing protein JYK00_09640 PF01351 Ribonuclease HII JYK00_09655 PF02146 Sir2 family JYK00_09670 PF13742 OB-fold nucleic acid binding domain JYK00_09670 PF02601 Exonuclease VII, large subunit JYK00_09675 PF01612 3'-5' exonuclease JYK00_09675 PF00476 DNA polymerase family A JYK00_09675 PF01367 5'-3' exonuclease, C-terminal SAM fold JYK00_09675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JYK00_09685 PF02491 SHS2 domain inserted in FTSA JYK00_09690 PF00488 MutS domain V JYK00_09690 PF01713 Smr domain JYK00_09700 PF01384 Phosphate transporter family JYK00_09725 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JYK00_09735 PF00696 Amino acid kinase family JYK00_09740 PF01515 Phosphate acetyl/butaryl transferase