locus-tag class description KDW03_00005 PF00245 Alkaline phosphatase KDW03_00015 PF00920 Dehydratase family KDW03_00025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KDW03_00035 PF00731 AIR carboxylase KDW03_00045 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KDW03_00050 PF00625 Guanylate kinase KDW03_00055 PF08340 Domain of unknown function (DUF1732) KDW03_00055 PF03755 YicC-like family, N-terminal region KDW03_00060 PF00035 Double-stranded RNA binding motif KDW03_00060 PF14622 Ribonuclease-III-like KDW03_00065 PF00109 Beta-ketoacyl synthase, N-terminal domain KDW03_00065 PF02801 Beta-ketoacyl synthase, C-terminal domain KDW03_00075 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KDW03_00075 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KDW03_00080 PF02504 Fatty acid synthesis protein KDW03_00085 PF01783 Ribosomal L32p protein family KDW03_00100 PF00128 Alpha amylase, catalytic domain KDW03_00100 PF03423 Carbohydrate binding domain (family 25) KDW03_00100 PF01373 Glycosyl hydrolase family 14 KDW03_00105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KDW03_00105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KDW03_00105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KDW03_00105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KDW03_00110 PF00180 Isocitrate/isopropylmalate dehydrogenase KDW03_00175 PF00872 Transposase, Mutator family KDW03_00250 PF01554 MatE KDW03_00255 PF02631 RecX family KDW03_00260 PF03641 Possible lysine decarboxylase KDW03_00265 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_00265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KDW03_00270 PF00512 His Kinase A (phospho-acceptor) domain KDW03_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_00270 PF00672 HAMP domain KDW03_00280 PF02091 Glycyl-tRNA synthetase alpha subunit KDW03_00285 PF00472 RF-1 domain KDW03_00285 PF03462 PCRF domain KDW03_00295 PF00672 HAMP domain KDW03_00295 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_00310 PF00149 Calcineurin-like phosphoesterase KDW03_00320 PF01795 MraW methylase family KDW03_00350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KDW03_00370 PF16198 tRNA pseudouridylate synthase B C-terminal domain KDW03_00370 PF09157 Pseudouridine synthase II TruB, C-terminal KDW03_00370 PF01509 TruB family pseudouridylate synthase (N terminal domain) KDW03_00390 PF13476 AAA domain KDW03_00395 PF01513 ATP-NAD kinase KDW03_00420 PF02445 Quinolinate synthetase A protein KDW03_00425 PF00675 Insulinase (Peptidase family M16) KDW03_00425 PF05193 Peptidase M16 inactive domain KDW03_00430 PF00128 Alpha amylase, catalytic domain KDW03_00430 PF02806 Alpha amylase, C-terminal all-beta domain KDW03_00430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_00450 PF00872 Transposase, Mutator family KDW03_00455 PF00872 Transposase, Mutator family KDW03_00480 PF00654 Voltage gated chloride channel KDW03_00485 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_00490 PF02384 N-6 DNA Methylase KDW03_00495 PF01555 DNA methylase KDW03_00515 PF11867 Domain of unknown function (DUF3387) KDW03_00515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KDW03_00515 PF18766 SWI2/SNF2 ATPase KDW03_00535 PF00563 EAL domain KDW03_00535 PF08668 HDOD domain KDW03_00555 PF08471 Class II vitamin B12-dependent ribonucleotide reductase KDW03_00555 PF02867 Ribonucleotide reductase, barrel domain KDW03_00645 PF13579 Glycosyl transferase 4-like domain KDW03_00645 PF00534 Glycosyl transferases group 1 KDW03_00650 PF17384 RimP C-terminal SH3 domain KDW03_00650 PF02576 RimP N-terminal domain KDW03_00655 PF00575 S1 RNA binding domain KDW03_00655 PF13184 NusA-like KH domain KDW03_00655 PF08529 NusA N-terminal domain KDW03_00660 PF04760 Translation initiation factor IF-2, N-terminal region KDW03_00660 PF11987 Translation-initiation factor 2 KDW03_00660 PF00009 Elongation factor Tu GTP binding domain KDW03_00665 PF02033 Ribosome-binding factor A KDW03_00680 PF12850 Calcineurin-like phosphoesterase superfamily domain KDW03_00685 PF02130 Uncharacterized protein family UPF0054 KDW03_00700 PF07698 7TM receptor with intracellular HD hydrolase KDW03_00700 PF07697 7TM-HD extracellular KDW03_00700 PF01966 HD domain KDW03_00705 PF02562 PhoH-like protein KDW03_00720 PF02954 Bacterial regulatory protein, Fis family KDW03_00720 PF00072 Response regulator receiver domain KDW03_00720 PF00158 Sigma-54 interaction domain KDW03_00725 PF02895 Signal transducing histidine kinase, homodimeric domain KDW03_00725 PF01584 CheW-like domain KDW03_00725 PF01627 Hpt domain KDW03_00725 PF09078 CheY binding KDW03_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_00730 PF00672 HAMP domain KDW03_00730 PF17200 Single Cache domain 2 KDW03_00730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_00735 PF02743 Cache domain KDW03_00735 PF00672 HAMP domain KDW03_00735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_00740 PF01584 CheW-like domain KDW03_00745 PF01739 CheR methyltransferase, SAM binding domain KDW03_00745 PF03705 CheR methyltransferase, all-alpha domain KDW03_00750 PF01339 CheB methylesterase KDW03_00750 PF00072 Response regulator receiver domain KDW03_00755 PF03975 CheD chemotactic sensory transduction KDW03_00760 PF00072 Response regulator receiver domain KDW03_00775 PF00072 Response regulator receiver domain KDW03_00790 PF01790 Prolipoprotein diacylglyceryl transferase KDW03_00795 PF01119 DNA mismatch repair protein, C-terminal domain KDW03_00795 PF08676 MutL C terminal dimerisation domain KDW03_00800 PF08497 Radical SAM N-terminal KDW03_00800 PF04055 Radical SAM superfamily KDW03_00805 PF04193 PQ loop repeat KDW03_00810 PF00551 Formyl transferase KDW03_00815 PF17820 PDZ domain KDW03_00815 PF02163 Peptidase family M50 KDW03_00820 PF05681 Fumarate hydratase (Fumerase) KDW03_00820 PF05683 Fumarase C-terminus KDW03_00825 PF02386 Cation transport protein KDW03_00840 PF02272 DHHA1 domain KDW03_00840 PF01411 tRNA synthetases class II (A) KDW03_00840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KDW03_00860 PF00872 Transposase, Mutator family KDW03_00875 PF00196 Bacterial regulatory proteins, luxR family KDW03_00875 PF17874 MalT-like TPR region KDW03_00885 PF01709 Transcriptional regulator KDW03_00900 PF01220 Dehydroquinase class II KDW03_00910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_00910 PF00512 His Kinase A (phospho-acceptor) domain KDW03_00910 PF00989 PAS fold KDW03_00935 PF00027 Cyclic nucleotide-binding domain KDW03_00935 PF13545 Crp-like helix-turn-helix domain KDW03_00945 PF01979 Amidohydrolase family KDW03_00950 PF07228 Stage II sporulation protein E (SpoIIE) KDW03_00950 PF13426 PAS domain KDW03_00970 PF07714 Protein tyrosine kinase KDW03_01000 PF00872 Transposase, Mutator family KDW03_01020 PF01523 Putative modulator of DNA gyrase KDW03_01025 PF04298 Putative neutral zinc metallopeptidase KDW03_01030 PF01098 Cell cycle protein KDW03_01035 PF03717 Penicillin-binding Protein dimerisation domain KDW03_01035 PF00905 Penicillin binding protein transpeptidase domain KDW03_01040 PF04851 Type III restriction enzyme, res subunit KDW03_01040 PF18074 Primosomal protein N C-terminal domain KDW03_01040 PF17764 3′ DNA-binding domain (3′BD) KDW03_01040 PF00271 Helicase conserved C-terminal domain KDW03_01040 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KDW03_01045 PF03167 Uracil DNA glycosylase superfamily KDW03_01050 PF01725 Ham1 family KDW03_01060 PF04371 Porphyromonas-type peptidyl-arginine deiminase KDW03_01065 PF02127 Aminopeptidase I zinc metalloprotease (M18) KDW03_01110 PF00696 Amino acid kinase family KDW03_01110 PF01842 ACT domain KDW03_01110 PF13840 ACT domain KDW03_01115 PF01467 Cytidylyltransferase-like KDW03_01120 PF00294 pfkB family carbohydrate kinase KDW03_01125 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KDW03_01140 PF00753 Metallo-beta-lactamase superfamily KDW03_01140 PF00258 Flavodoxin KDW03_01145 PF00301 Rubredoxin KDW03_01145 PF01613 Flavin reductase like domain KDW03_01150 PF01925 Sulfite exporter TauE/SafE KDW03_01155 PF01699 Sodium/calcium exchanger protein KDW03_01195 PF00579 tRNA synthetases class I (W and Y) KDW03_01195 PF01479 S4 domain KDW03_01205 PF01207 Dihydrouridine synthase (Dus) KDW03_01230 PF01515 Phosphate acetyl/butaryl transferase KDW03_01235 PF01467 Cytidylyltransferase-like KDW03_01280 PF18073 Rubredoxin metal binding domain KDW03_01295 PF08267 Cobalamin-independent synthase, N-terminal domain KDW03_01295 PF01717 Cobalamin-independent synthase, Catalytic domain KDW03_01300 PF00005 ABC transporter KDW03_01310 PF00392 Bacterial regulatory proteins, gntR family KDW03_01315 PF02603 HPr Serine kinase N terminus KDW03_01315 PF07475 HPr Serine kinase C-terminal domain KDW03_01325 PF04539 Sigma-70 region 3 KDW03_01325 PF04545 Sigma-70, region 4 KDW03_01325 PF04542 Sigma-70 region 2 KDW03_01330 PF01389 OmpA-like transmembrane domain KDW03_01330 PF00691 OmpA family KDW03_01340 PF02906 Iron only hydrogenase large subunit, C-terminal domain KDW03_01340 PF02256 Iron hydrogenase small subunit KDW03_01340 PF00037 4Fe-4S binding domain KDW03_01340 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KDW03_01345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KDW03_01345 PF00037 4Fe-4S binding domain KDW03_01345 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KDW03_01370 PF00128 Alpha amylase, catalytic domain KDW03_01370 PF11896 Domain of unknown function (DUF3416) KDW03_01390 PF00501 AMP-binding enzyme KDW03_01395 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase KDW03_01395 PF01676 Metalloenzyme superfamily KDW03_01410 PF04620 Flagellar filament outer layer protein Flaa KDW03_01415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KDW03_01415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KDW03_01415 PF00205 Thiamine pyrophosphate enzyme, central domain KDW03_01420 PF10369 Small subunit of acetolactate synthase KDW03_01425 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KDW03_01425 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KDW03_01480 PF02561 Flagellar protein FliS KDW03_01500 PF04324 BFD-like [2Fe-2S] binding domain KDW03_01500 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_01505 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KDW03_01505 PF01266 FAD dependent oxidoreductase KDW03_01510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KDW03_01510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KDW03_01515 PF12146 Serine aminopeptidase, S33 KDW03_01520 PF01050 Mannose-6-phosphate isomerase KDW03_01520 PF00483 Nucleotidyl transferase KDW03_01525 PF01050 Mannose-6-phosphate isomerase KDW03_01525 PF00483 Nucleotidyl transferase KDW03_01540 PF01343 Peptidase family S49 KDW03_01550 PF00885 6,7-dimethyl-8-ribityllumazine synthase KDW03_01555 PF01029 NusB family KDW03_01560 PF03819 MazG nucleotide pyrophosphohydrolase domain KDW03_01560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KDW03_01645 PF00872 Transposase, Mutator family KDW03_01650 PF00872 Transposase, Mutator family KDW03_01735 PF04233 Phage Mu protein F like protein KDW03_01745 PF00872 Transposase, Mutator family KDW03_01750 PF00872 Transposase, Mutator family KDW03_01760 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_01765 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_01770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KDW03_01775 PF01812 5-formyltetrahydrofolate cyclo-ligase family KDW03_01795 PF01523 Putative modulator of DNA gyrase KDW03_01805 PF17864 RuvB AAA lid domain KDW03_01805 PF05491 RuvB C-terminal winged helix domain KDW03_01805 PF05496 Holliday junction DNA helicase RuvB P-loop domain KDW03_01810 PF00436 Single-strand binding protein family KDW03_01840 PF00535 Glycosyl transferase family 2 KDW03_01845 PF02875 Mur ligase family, glutamate ligase domain KDW03_01845 PF08245 Mur ligase middle domain KDW03_01855 PF01584 CheW-like domain KDW03_01865 PF08463 EcoEI R protein C-terminal KDW03_01865 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KDW03_01865 PF00271 Helicase conserved C-terminal domain KDW03_01865 PF04851 Type III restriction enzyme, res subunit KDW03_01870 PF02661 Fic/DOC family KDW03_01870 PF13784 Fic/DOC family N-terminal KDW03_02055 PF17762 HTH domain found in ParB protein KDW03_02055 PF02195 ParB-like nuclease domain KDW03_02210 PF17191 RecG wedge domain KDW03_02210 PF00270 DEAD/DEAH box helicase KDW03_02210 PF13749 Putative ATP-dependent DNA helicase recG C-terminal KDW03_02220 PF00672 HAMP domain KDW03_02220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_02225 PF00872 Transposase, Mutator family KDW03_02230 PF00872 Transposase, Mutator family KDW03_02235 PF00342 Phosphoglucose isomerase KDW03_02240 PF02580 D-Tyr-tRNA(Tyr) deacylase KDW03_02245 PF01171 PP-loop family KDW03_02250 PF00749 tRNA synthetases class I (E and Q), catalytic domain KDW03_02265 PF00679 Elongation factor G C-terminus KDW03_02265 PF14492 Elongation Factor G, domain II KDW03_02265 PF03764 Elongation factor G, domain IV KDW03_02265 PF00009 Elongation factor Tu GTP binding domain KDW03_02265 PF03144 Elongation factor Tu domain 2 KDW03_02275 PF03699 Uncharacterised protein family (UPF0182) KDW03_02285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KDW03_02285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KDW03_02290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KDW03_02310 PF04055 Radical SAM superfamily KDW03_02310 PF16199 Radical_SAM C-terminal domain KDW03_02330 PF00121 Triosephosphate isomerase KDW03_02335 PF00162 Phosphoglycerate kinase KDW03_02360 PF00872 Transposase, Mutator family KDW03_02385 PF07745 Glycosyl hydrolase family 53 KDW03_02390 PF00004 ATPase family associated with various cellular activities (AAA) KDW03_02390 PF07724 AAA domain (Cdc48 subfamily) KDW03_02390 PF17871 AAA lid domain KDW03_02390 PF02861 Clp amino terminal domain, pathogenicity island component KDW03_02390 PF10431 C-terminal, D2-small domain, of ClpB protein KDW03_02425 PF02096 60Kd inner membrane protein KDW03_02425 PF14849 YidC periplasmic domain KDW03_02430 PF12631 MnmE helical domain KDW03_02430 PF10396 GTP-binding protein TrmE N-terminus KDW03_02430 PF01926 50S ribosome-binding GTPase KDW03_02435 PF01416 tRNA pseudouridine synthase KDW03_02465 PF02547 Queuosine biosynthesis protein KDW03_02470 PF00753 Metallo-beta-lactamase superfamily KDW03_02480 PF00484 Carbonic anhydrase KDW03_02490 PF02954 Bacterial regulatory protein, Fis family KDW03_02490 PF00072 Response regulator receiver domain KDW03_02490 PF00158 Sigma-54 interaction domain KDW03_02500 PF00309 Sigma-54 factor, Activator interacting domain (AID) KDW03_02500 PF04552 Sigma-54, DNA binding domain KDW03_02500 PF04963 Sigma-54 factor, core binding domain KDW03_02505 PF02896 PEP-utilising enzyme, TIM barrel domain KDW03_02505 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KDW03_02505 PF00391 PEP-utilising enzyme, mobile domain KDW03_02520 PF02548 Ketopantoate hydroxymethyltransferase KDW03_02540 PF02472 Biopolymer transport protein ExbD/TolR KDW03_02570 PF00580 UvrD/REP helicase N-terminal domain KDW03_02570 PF13361 UvrD-like helicase C-terminal domain KDW03_02580 PF01588 Putative tRNA binding domain KDW03_02580 PF03483 B3/4 domain KDW03_02580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KDW03_02580 PF03147 Ferredoxin-fold anticodon binding domain KDW03_02580 PF03484 tRNA synthetase B5 domain KDW03_02585 PF01409 tRNA synthetases class II core domain (F) KDW03_02585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KDW03_02590 PF13419 Haloacid dehalogenase-like hydrolase KDW03_02595 PF00521 DNA gyrase/topoisomerase IV, subunit A KDW03_02595 PF03989 DNA gyrase C-terminal domain, beta-propeller KDW03_02600 PF04055 Radical SAM superfamily KDW03_02600 PF00919 Uncharacterized protein family UPF0004 KDW03_02615 PF00027 Cyclic nucleotide-binding domain KDW03_02615 PF13545 Crp-like helix-turn-helix domain KDW03_02620 PF00291 Pyridoxal-phosphate dependent enzyme KDW03_02625 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KDW03_02625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KDW03_02630 PF04997 RNA polymerase Rpb1, domain 1 KDW03_02630 PF04998 RNA polymerase Rpb1, domain 5 KDW03_02630 PF05000 RNA polymerase Rpb1, domain 4 KDW03_02630 PF04983 RNA polymerase Rpb1, domain 3 KDW03_02630 PF00623 RNA polymerase Rpb1, domain 2 KDW03_02635 PF00562 RNA polymerase Rpb2, domain 6 KDW03_02635 PF10385 RNA polymerase beta subunit external 1 domain KDW03_02635 PF04565 RNA polymerase Rpb2, domain 3 KDW03_02635 PF04561 RNA polymerase Rpb2, domain 2 KDW03_02635 PF04563 RNA polymerase beta subunit KDW03_02635 PF04560 RNA polymerase Rpb2, domain 7 KDW03_02640 PF16320 Ribosomal protein L7/L12 dimerisation domain KDW03_02640 PF00542 Ribosomal protein L7/L12 C-terminal domain KDW03_02645 PF00466 Ribosomal protein L10 KDW03_02650 PF00687 Ribosomal protein L1p/L10e family KDW03_02655 PF03946 Ribosomal protein L11, N-terminal domain KDW03_02655 PF00298 Ribosomal protein L11, RNA binding domain KDW03_02660 PF02357 Transcription termination factor nusG KDW03_02660 PF00467 KOW motif KDW03_02665 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KDW03_02675 PF00471 Ribosomal protein L33 KDW03_02695 PF09587 Bacterial capsule synthesis protein PGA_cap KDW03_02700 PF00206 Lyase KDW03_02700 PF14698 Argininosuccinate lyase C-terminal KDW03_02705 PF00180 Isocitrate/isopropylmalate dehydrogenase KDW03_02745 PF04324 BFD-like [2Fe-2S] binding domain KDW03_02745 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_02745 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KDW03_02745 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KDW03_02745 PF18267 Rubredoxin NAD+ reductase C-terminal domain KDW03_02750 PF12798 4Fe-4S binding domain KDW03_02750 PF00037 4Fe-4S binding domain KDW03_02755 PF13187 4Fe-4S dicluster domain KDW03_02755 PF01645 Conserved region in glutamate synthase KDW03_02765 PF00310 Glutamine amidotransferases class-II KDW03_02770 PF00534 Glycosyl transferases group 1 KDW03_02770 PF13439 Glycosyltransferase Family 4 KDW03_02780 PF01312 FlhB HrpN YscU SpaS Family KDW03_02785 PF00072 Response regulator receiver domain KDW03_02785 PF01966 HD domain KDW03_02790 PF02021 Uncharacterised protein family UPF0102 KDW03_02805 PF00270 DEAD/DEAH box helicase KDW03_02805 PF17191 RecG wedge domain KDW03_02805 PF00271 Helicase conserved C-terminal domain KDW03_02810 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KDW03_02810 PF00970 Oxidoreductase FAD-binding domain KDW03_02810 PF00175 Oxidoreductase NAD-binding domain KDW03_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_02840 PF00512 His Kinase A (phospho-acceptor) domain KDW03_02840 PF08448 PAS fold KDW03_02840 PF13188 PAS domain KDW03_02840 PF00072 Response regulator receiver domain KDW03_02845 PF01966 HD domain KDW03_02890 PF00436 Single-strand binding protein family KDW03_02895 PF01084 Ribosomal protein S18 KDW03_02905 PF03948 Ribosomal protein L9, C-terminal domain KDW03_02905 PF01281 Ribosomal protein L9, N-terminal domain KDW03_02910 PF03796 DnaB-like helicase C terminal domain KDW03_02910 PF00772 DnaB-like helicase N terminal domain KDW03_02915 PF02405 Permease MlaE KDW03_02920 PF00005 ABC transporter KDW03_02975 PF03481 Putative GTP-binding controlling metal-binding KDW03_02975 PF01300 Telomere recombination KDW03_02980 PF03692 Putative zinc- or iron-chelating domain KDW03_02985 PF01554 MatE KDW03_02990 PF01551 Peptidase family M23 KDW03_02990 PF10145 Phage-related minor tail protein KDW03_02990 PF01464 Transglycosylase SLT domain KDW03_03005 PF01142 tRNA pseudouridine synthase D (TruD) KDW03_03010 PF00128 Alpha amylase, catalytic domain KDW03_03010 PF17999 Pullulanase N1-terminal domain KDW03_03010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_03015 PF02508 Rnf-Nqr subunit, membrane protein KDW03_03020 PF02508 Rnf-Nqr subunit, membrane protein KDW03_03025 PF04205 FMN-binding domain KDW03_03030 PF03116 NQR2, RnfD, RnfE family KDW03_03035 PF13375 RnfC Barrel sandwich hybrid domain KDW03_03035 PF10531 SLBB domain KDW03_03035 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KDW03_03035 PF13237 4Fe-4S dicluster domain KDW03_03040 PF00005 ABC transporter KDW03_03040 PF17912 MalK OB fold domain KDW03_03040 PF03459 TOBE domain KDW03_03045 PF01121 Dephospho-CoA kinase KDW03_03065 PF00781 Diacylglycerol kinase catalytic domain KDW03_03075 PF00781 Diacylglycerol kinase catalytic domain KDW03_03110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_03110 PF00128 Alpha amylase, catalytic domain KDW03_03110 PF03714 Bacterial pullanase-associated domain KDW03_03135 PF00753 Metallo-beta-lactamase superfamily KDW03_03135 PF12706 Beta-lactamase superfamily domain KDW03_03155 PF11871 Domain of unknown function (DUF3391) KDW03_03155 PF01966 HD domain KDW03_03170 PF01464 Transglycosylase SLT domain KDW03_03180 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_03200 PF00196 Bacterial regulatory proteins, luxR family KDW03_03215 PF02163 Peptidase family M50 KDW03_03235 PF02574 Homocysteine S-methyltransferase KDW03_03235 PF00809 Pterin binding enzyme KDW03_03235 PF02965 Vitamin B12 dependent methionine synthase, activation domain KDW03_03235 PF02607 B12 binding domain KDW03_03235 PF02310 B12 binding domain KDW03_03240 PF02896 PEP-utilising enzyme, TIM barrel domain KDW03_03240 PF00391 PEP-utilising enzyme, mobile domain KDW03_03240 PF05524 PEP-utilising enzyme, N-terminal KDW03_03245 PF00990 Diguanylate cyclase, GGDEF domain KDW03_03250 PF00482 Type II secretion system (T2SS), protein F KDW03_03255 PF00437 Type II/IV secretion system protein KDW03_03255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KDW03_03260 PF07690 Major Facilitator Superfamily KDW03_03270 PF04138 GtrA-like protein KDW03_03275 PF00535 Glycosyl transferase family 2 KDW03_03280 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase KDW03_03305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KDW03_03335 PF00535 Glycosyl transferase family 2 KDW03_03350 PF16363 GDP-mannose 4,6 dehydratase KDW03_03355 PF01370 NAD dependent epimerase/dehydratase family KDW03_03360 PF00535 Glycosyl transferase family 2 KDW03_03370 PF00535 Glycosyl transferase family 2 KDW03_03385 PF13439 Glycosyltransferase Family 4 KDW03_03385 PF00534 Glycosyl transferases group 1 KDW03_03390 PF00535 Glycosyl transferase family 2 KDW03_03410 PF13439 Glycosyltransferase Family 4 KDW03_03410 PF00534 Glycosyl transferases group 1 KDW03_03415 PF08323 Starch synthase catalytic domain KDW03_03415 PF00534 Glycosyl transferases group 1 KDW03_03430 PF01593 Flavin containing amine oxidoreductase KDW03_03450 PF00365 Phosphofructokinase KDW03_03455 PF02742 Iron dependent repressor, metal binding and dimerisation domain KDW03_03455 PF01325 Iron dependent repressor, N-terminal DNA binding domain KDW03_03460 PF04023 FeoA domain KDW03_03460 PF07664 Ferrous iron transport protein B C terminus KDW03_03460 PF17910 FeoB cytosolic helical domain KDW03_03460 PF02421 Ferrous iron transport protein B KDW03_03460 PF07670 Nucleoside recognition KDW03_03465 PF01544 CorA-like Mg2+ transporter protein KDW03_03480 PF00005 ABC transporter KDW03_03485 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_03490 PF00497 Bacterial extracellular solute-binding proteins, family 3 KDW03_03560 PF00271 Helicase conserved C-terminal domain KDW03_03560 PF00176 SNF2 family N-terminal domain KDW03_03575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_03575 PF00306 ATP synthase alpha/beta chain, C terminal domain KDW03_03575 PF02874 ATP synthase alpha/beta family, beta-barrel domain KDW03_03585 PF01541 GIY-YIG catalytic domain KDW03_03590 PF02653 Branched-chain amino acid transport system / permease component KDW03_03595 PF00005 ABC transporter KDW03_03600 PF00285 Citrate synthase, C-terminal domain KDW03_03610 PF00691 OmpA family KDW03_03610 PF13677 Membrane MotB of proton-channel complex MotA/MotB KDW03_03615 PF01618 MotA/TolQ/ExbB proton channel family KDW03_03625 PF07559 Flagellar basal body protein FlaE KDW03_03625 PF00460 Flagella basal body rod protein KDW03_03625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KDW03_03630 PF03963 Flagellar hook capping protein - N-terminal region KDW03_03690 PF00294 pfkB family carbohydrate kinase KDW03_03695 PF01272 Transcription elongation factor, GreA/GreB, C-term KDW03_03695 PF03449 Transcription elongation factor, N-terminal KDW03_03715 PF00571 CBS domain KDW03_03715 PF00005 ABC transporter KDW03_03720 PF09334 tRNA synthetases class I (M) KDW03_03720 PF01588 Putative tRNA binding domain KDW03_03720 PF08264 Anticodon-binding domain of tRNA KDW03_03725 PF00871 Acetokinase family KDW03_03730 PF00483 Nucleotidyl transferase KDW03_03740 PF02581 Thiamine monophosphate synthase KDW03_03740 PF08543 Phosphomethylpyrimidine kinase KDW03_03745 PF01964 Radical SAM ThiC family KDW03_03750 PF16325 Peptidase family U32 C-terminal domain KDW03_03750 PF01136 Peptidase family U32 KDW03_03790 PF12705 PD-(D/E)XK nuclease superfamily KDW03_03790 PF13361 UvrD-like helicase C-terminal domain KDW03_03790 PF00580 UvrD/REP helicase N-terminal domain KDW03_03800 PF01625 Peptide methionine sulfoxide reductase KDW03_03800 PF01641 SelR domain KDW03_03820 PF05690 Thiazole biosynthesis protein ThiG KDW03_03825 PF00860 Permease family KDW03_03830 PF13614 AAA domain KDW03_03835 PF02195 ParB-like nuclease domain KDW03_03835 PF17762 HTH domain found in ParB protein KDW03_03840 PF00155 Aminotransferase class I and II KDW03_03855 PF00696 Amino acid kinase family KDW03_03865 PF01740 STAS domain KDW03_03895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KDW03_03900 PF01351 Ribonuclease HII KDW03_03905 PF01458 Uncharacterized protein family (UPF0051) KDW03_03910 PF00005 ABC transporter KDW03_03915 PF00899 ThiF family KDW03_03920 PF04055 Radical SAM superfamily KDW03_03920 PF13186 Iron-sulfur cluster-binding domain KDW03_03925 PF01451 Low molecular weight phosphotyrosine protein phosphatase KDW03_03940 PF00486 Transcriptional regulatory protein, C terminal KDW03_03940 PF00072 Response regulator receiver domain KDW03_03945 PF01368 DHH family KDW03_03945 PF17768 RecJ OB domain KDW03_03945 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KDW03_03945 PF02272 DHHA1 domain KDW03_03950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KDW03_03950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KDW03_03960 PF03030 Inorganic H+ pyrophosphatase KDW03_03995 PF00128 Alpha amylase, catalytic domain KDW03_03995 PF02806 Alpha amylase, C-terminal all-beta domain KDW03_04010 PF00171 Aldehyde dehydrogenase family KDW03_04030 PF16363 GDP-mannose 4,6 dehydratase KDW03_04035 PF04321 RmlD substrate binding domain KDW03_04040 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KDW03_04045 PF00483 Nucleotidyl transferase KDW03_04070 PF13186 Iron-sulfur cluster-binding domain KDW03_04075 PF00291 Pyridoxal-phosphate dependent enzyme KDW03_04085 PF00152 tRNA synthetases class II (D, K and N) KDW03_04085 PF01336 OB-fold nucleic acid binding domain KDW03_04090 PF00330 Aconitase family (aconitate hydratase) KDW03_04090 PF00694 Aconitase C-terminal domain KDW03_04095 PF00117 Glutamine amidotransferase class-I KDW03_04095 PF00958 GMP synthase C terminal domain KDW03_04095 PF02540 NAD synthase KDW03_04105 PF02152 Dihydroneopterin aldolase KDW03_04105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KDW03_04115 PF00128 Alpha amylase, catalytic domain KDW03_04120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KDW03_04120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KDW03_04125 PF02768 DNA polymerase III beta subunit, C-terminal domain KDW03_04125 PF00712 DNA polymerase III beta subunit, N-terminal domain KDW03_04125 PF02767 DNA polymerase III beta subunit, central domain KDW03_04135 PF00005 ABC transporter KDW03_04155 PF00005 ABC transporter KDW03_04155 PF02687 FtsX-like permease family KDW03_04155 PF12704 MacB-like periplasmic core domain KDW03_04180 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding KDW03_04245 PF06470 SMC proteins Flexible Hinge Domain KDW03_04245 PF02463 RecF/RecN/SMC N terminal domain KDW03_04265 PF04542 Sigma-70 region 2 KDW03_04265 PF08281 Sigma-70, region 4 KDW03_04275 PF04055 Radical SAM superfamily KDW03_04275 PF06969 HemN C-terminal domain KDW03_04285 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KDW03_04285 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KDW03_04290 PF02082 Transcriptional regulator KDW03_04295 PF00291 Pyridoxal-phosphate dependent enzyme KDW03_04300 PF01053 Cys/Met metabolism PLP-dependent enzyme KDW03_04305 PF05690 Thiazole biosynthesis protein ThiG KDW03_04305 PF02597 ThiS family KDW03_04325 PF00486 Transcriptional regulatory protein, C terminal KDW03_04325 PF00072 Response regulator receiver domain KDW03_04330 PF01882 Protein of unknown function DUF58 KDW03_04340 PF00578 AhpC/TSA family KDW03_04345 PF02683 Cytochrome C biogenesis protein transmembrane region KDW03_04365 PF01022 Bacterial regulatory protein, arsR family KDW03_04370 PF00872 Transposase, Mutator family KDW03_04380 PF00381 PTS HPr component phosphorylation site KDW03_04390 PF00672 HAMP domain KDW03_04390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_04390 PF00512 His Kinase A (phospho-acceptor) domain KDW03_04390 PF00989 PAS fold KDW03_04395 PF02954 Bacterial regulatory protein, Fis family KDW03_04395 PF00072 Response regulator receiver domain KDW03_04395 PF00158 Sigma-54 interaction domain KDW03_04400 PF02677 Epoxyqueuosine reductase QueH KDW03_04405 PF04452 RNA methyltransferase KDW03_04410 PF01502 Phosphoribosyl-AMP cyclohydrolase KDW03_04410 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KDW03_04415 PF00158 Sigma-54 interaction domain KDW03_04415 PF00072 Response regulator receiver domain KDW03_04415 PF02954 Bacterial regulatory protein, Fis family KDW03_04440 PF10458 Valyl tRNA synthetase tRNA binding arm KDW03_04440 PF00133 tRNA synthetases class I (I, L, M and V) KDW03_04440 PF08264 Anticodon-binding domain of tRNA KDW03_04450 PF01966 HD domain KDW03_04450 PF11871 Domain of unknown function (DUF3391) KDW03_04455 PF00158 Sigma-54 interaction domain KDW03_04455 PF00072 Response regulator receiver domain KDW03_04455 PF02954 Bacterial regulatory protein, Fis family KDW03_04465 PF02481 DNA recombination-mediator protein A KDW03_04465 PF17782 DprA winged helix domain KDW03_04480 PF01256 Carbohydrate kinase KDW03_04480 PF03853 YjeF-related protein N-terminus KDW03_04495 PF07055 Enoyl reductase FAD binding domain KDW03_04495 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KDW03_04495 PF12241 Trans-2-enoyl-CoA reductase catalytic region KDW03_04505 PF00085 Thioredoxin KDW03_04550 PF02080 TrkA-C domain KDW03_04550 PF02254 TrkA-N domain KDW03_04555 PF00586 AIR synthase related protein, N-terminal domain KDW03_04555 PF02769 AIR synthase related protein, C-terminal domain KDW03_04560 PF00691 OmpA family KDW03_04585 PF01678 Diaminopimelate epimerase KDW03_04595 PF01165 Ribosomal protein S21 KDW03_04600 PF01230 HIT domain KDW03_04605 PF00488 MutS domain V KDW03_04605 PF05190 MutS family domain IV KDW03_04605 PF05192 MutS domain III KDW03_04605 PF01624 MutS domain I KDW03_04605 PF05188 MutS domain II KDW03_04610 PF00364 Biotin-requiring enzyme KDW03_04615 PF00563 EAL domain KDW03_04615 PF08495 FIST N domain KDW03_04615 PF10442 FIST C domain KDW03_04615 PF00990 Diguanylate cyclase, GGDEF domain KDW03_04650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KDW03_04655 PF02719 Polysaccharide biosynthesis protein KDW03_04660 PF00588 SpoU rRNA Methylase family KDW03_04665 PF02424 ApbE family KDW03_04670 PF00815 Histidinol dehydrogenase KDW03_04685 PF00085 Thioredoxin KDW03_04700 PF00814 Glycoprotease family KDW03_04715 PF01966 HD domain KDW03_04715 PF13286 Phosphohydrolase-associated domain KDW03_04730 PF01171 PP-loop family KDW03_04735 PF03979 Sigma-70 factor, region 1.1 KDW03_04735 PF00140 Sigma-70 factor, region 1.2 KDW03_04735 PF04542 Sigma-70 region 2 KDW03_04735 PF04539 Sigma-70 region 3 KDW03_04735 PF04545 Sigma-70, region 4 KDW03_04765 PF00460 Flagella basal body rod protein KDW03_04765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KDW03_04770 PF00270 DEAD/DEAH box helicase KDW03_04770 PF00271 Helicase conserved C-terminal domain KDW03_04805 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KDW03_04805 PF17810 Arginine decarboxylase helical bundle domain KDW03_04805 PF17944 Arginine decarboxylase C-terminal helical extension KDW03_04810 PF03435 Saccharopine dehydrogenase NADP binding domain KDW03_04810 PF16653 Saccharopine dehydrogenase C-terminal domain KDW03_04815 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KDW03_04820 PF02457 DisA bacterial checkpoint controller nucleotide-binding KDW03_04850 PF00829 Ribosomal prokaryotic L21 protein KDW03_04860 PF01016 Ribosomal L27 protein KDW03_04870 PF02774 Semialdehyde dehydrogenase, dimerisation domain KDW03_04870 PF01118 Semialdehyde dehydrogenase, NAD binding domain KDW03_04875 PF13393 Histidyl-tRNA synthetase KDW03_04875 PF03129 Anticodon binding domain KDW03_04880 PF02545 Maf-like protein KDW03_04885 PF00679 Elongation factor G C-terminus KDW03_04885 PF06421 GTP-binding protein LepA C-terminus KDW03_04885 PF03144 Elongation factor Tu domain 2 KDW03_04885 PF00009 Elongation factor Tu GTP binding domain KDW03_04890 PF00834 Ribulose-phosphate 3 epimerase family KDW03_04895 PF03793 PASTA domain KDW03_04895 PF00069 Protein kinase domain KDW03_04900 PF02911 Formyl transferase, C-terminal domain KDW03_04900 PF00551 Formyl transferase KDW03_04905 PF01327 Polypeptide deformylase KDW03_04910 PF00246 Zinc carboxypeptidase KDW03_04915 PF00535 Glycosyl transferase family 2 KDW03_04920 PF02583 Metal-sensitive transcriptional repressor KDW03_04935 PF00403 Heavy-metal-associated domain KDW03_04950 PF00563 EAL domain KDW03_04950 PF08495 FIST N domain KDW03_04950 PF00990 Diguanylate cyclase, GGDEF domain KDW03_04950 PF10442 FIST C domain KDW03_04960 PF00128 Alpha amylase, catalytic domain KDW03_04980 PF17674 HHH domain KDW03_04980 PF00575 S1 RNA binding domain KDW03_04980 PF09371 Tex-like protein N-terminal domain KDW03_04980 PF16921 Tex protein YqgF-like domain KDW03_04985 PF02673 Bacitracin resistance protein BacA KDW03_04990 PF01580 FtsK/SpoIIIE family KDW03_04990 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KDW03_04990 PF09397 Ftsk gamma domain KDW03_04990 PF17854 FtsK alpha domain KDW03_05000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KDW03_05015 PF00155 Aminotransferase class I and II KDW03_05020 PF00989 PAS fold KDW03_05020 PF00512 His Kinase A (phospho-acceptor) domain KDW03_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_05020 PF16736 Single Cache-like KDW03_05025 PF00106 short chain dehydrogenase KDW03_05090 PF18395 Cas3 C-terminal domain KDW03_05090 PF00270 DEAD/DEAH box helicase KDW03_05090 PF18019 HD domain KDW03_05115 PF00872 Transposase, Mutator family KDW03_05120 PF00872 Transposase, Mutator family KDW03_05125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KDW03_05125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KDW03_05130 PF13407 Periplasmic binding protein domain KDW03_05135 PF00005 ABC transporter KDW03_05140 PF02653 Branched-chain amino acid transport system / permease component KDW03_05145 PF00483 Nucleotidyl transferase KDW03_05150 PF00672 HAMP domain KDW03_05150 PF07228 Stage II sporulation protein E (SpoIIE) KDW03_05160 PF00005 ABC transporter KDW03_05170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_05170 PF00128 Alpha amylase, catalytic domain KDW03_05185 PF00202 Aminotransferase class-III KDW03_05195 PF08245 Mur ligase middle domain KDW03_05195 PF01225 Mur ligase family, catalytic domain KDW03_05195 PF02875 Mur ligase family, glutamate ligase domain KDW03_05215 PF00534 Glycosyl transferases group 1 KDW03_05215 PF13439 Glycosyltransferase Family 4 KDW03_05220 PF00575 S1 RNA binding domain KDW03_05230 PF02686 Glu-tRNAGln amidotransferase C subunit KDW03_05235 PF02390 Putative methyltransferase KDW03_05240 PF01026 TatD related DNase KDW03_05245 PF08525 Opacity-associated protein A N-terminal motif KDW03_05245 PF01476 LysM domain KDW03_05245 PF01551 Peptidase family M23 KDW03_05260 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KDW03_05260 PF00132 Bacterial transferase hexapeptide (six repeats) KDW03_05265 PF02684 Lipid-A-disaccharide synthetase KDW03_05270 PF03652 Holliday junction resolvase KDW03_05275 PF00356 Bacterial regulatory proteins, lacI family KDW03_05280 PF16338 Domain of unknown function (DUF4968) KDW03_05280 PF17137 Domain of unknown function (DUF5110) KDW03_05280 PF13802 Galactose mutarotase-like KDW03_05280 PF01055 Glycosyl hydrolases family 31 KDW03_05285 PF00128 Alpha amylase, catalytic domain KDW03_05285 PF02903 Alpha amylase, N-terminal ig-like domain KDW03_05290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KDW03_05290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KDW03_05315 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KDW03_05315 PF05221 S-adenosyl-L-homocysteine hydrolase KDW03_05325 PF01209 ubiE/COQ5 methyltransferase family KDW03_05330 PF00872 Transposase, Mutator family KDW03_05340 PF00356 Bacterial regulatory proteins, lacI family KDW03_05345 PF08486 Stage II sporulation protein KDW03_05350 PF02660 Glycerol-3-phosphate acyltransferase KDW03_05355 PF00005 ABC transporter KDW03_05355 PF16326 ABC transporter C-terminal domain KDW03_05355 PF12848 ABC transporter KDW03_05365 PF01496 V-type ATPase 116kDa subunit family KDW03_05375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_05375 PF02874 ATP synthase alpha/beta family, beta-barrel domain KDW03_05380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_05380 PF02874 ATP synthase alpha/beta family, beta-barrel domain KDW03_05380 PF16886 ATPsynthase alpha/beta subunit N-term extension KDW03_05390 PF01991 ATP synthase (E/31 kDa) subunit KDW03_05395 PF01618 MotA/TolQ/ExbB proton channel family KDW03_05400 PF02660 Glycerol-3-phosphate acyltransferase KDW03_05405 PF01425 Amidase KDW03_05410 PF00037 4Fe-4S binding domain KDW03_05430 PF12282 Signal transduction histidine kinase KDW03_05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_05430 PF07568 Histidine kinase KDW03_05450 PF00543 Nitrogen regulatory protein P-II KDW03_05455 PF00909 Ammonium Transporter Family KDW03_05460 PF01252 Signal peptidase (SPase) II KDW03_05485 PF00881 Nitroreductase family KDW03_05490 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_05505 PF00128 Alpha amylase, catalytic domain KDW03_05505 PF02806 Alpha amylase, C-terminal all-beta domain KDW03_05520 PF00005 ABC transporter KDW03_05525 PF00171 Aldehyde dehydrogenase family KDW03_05530 PF04101 Glycosyltransferase family 28 C-terminal domain KDW03_05530 PF03033 Glycosyltransferase family 28 N-terminal domain KDW03_05545 PF01966 HD domain KDW03_05545 PF00013 KH domain KDW03_05545 PF12072 Domain of unknown function (DUF3552) KDW03_05550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KDW03_05550 PF00460 Flagella basal body rod protein KDW03_05560 PF02583 Metal-sensitive transcriptional repressor KDW03_05575 PF00403 Heavy-metal-associated domain KDW03_05585 PF00460 Flagella basal body rod protein KDW03_05585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KDW03_05590 PF00872 Transposase, Mutator family KDW03_05600 PF00872 Transposase, Mutator family KDW03_05605 PF08241 Methyltransferase domain KDW03_05630 PF00155 Aminotransferase class I and II KDW03_05635 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KDW03_05635 PF12826 Helix-hairpin-helix motif KDW03_05635 PF03120 NAD-dependent DNA ligase OB-fold domain KDW03_05635 PF00533 BRCA1 C Terminus (BRCT) domain KDW03_05635 PF01653 NAD-dependent DNA ligase adenylation domain KDW03_05640 PF00005 ABC transporter KDW03_05645 PF01061 ABC-2 type transporter KDW03_05665 PF00750 tRNA synthetases class I (R) KDW03_05665 PF05746 DALR anticodon binding domain KDW03_05665 PF03485 Arginyl tRNA synthetase N terminal domain KDW03_05680 PF12857 TOBE-like domain KDW03_05680 PF00005 ABC transporter KDW03_05685 PF01979 Amidohydrolase family KDW03_05695 PF00166 Chaperonin 10 Kd subunit KDW03_05700 PF04002 RadC-like JAB domain KDW03_05705 PF04011 LemA family KDW03_05720 PF17820 PDZ domain KDW03_05720 PF13180 PDZ domain KDW03_05780 PF02540 NAD synthase KDW03_05780 PF00795 Carbon-nitrogen hydrolase KDW03_05790 PF01960 ArgJ family KDW03_05795 PF01118 Semialdehyde dehydrogenase, NAD binding domain KDW03_05795 PF02774 Semialdehyde dehydrogenase, dimerisation domain KDW03_05800 PF00154 recA bacterial DNA recombination protein KDW03_05810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KDW03_05810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KDW03_05810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KDW03_05810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KDW03_05815 PF00133 tRNA synthetases class I (I, L, M and V) KDW03_05815 PF06827 Zinc finger found in FPG and IleRS KDW03_05815 PF08264 Anticodon-binding domain of tRNA KDW03_05835 PF00436 Single-strand binding protein family KDW03_05870 PF00164 Ribosomal protein S12/S23 KDW03_05875 PF00177 Ribosomal protein S7p/S5e KDW03_05880 PF14492 Elongation Factor G, domain II KDW03_05880 PF03144 Elongation factor Tu domain 2 KDW03_05880 PF03764 Elongation factor G, domain IV KDW03_05880 PF00009 Elongation factor Tu GTP binding domain KDW03_05880 PF00679 Elongation factor G C-terminus KDW03_05885 PF03143 Elongation factor Tu C-terminal domain KDW03_05885 PF00009 Elongation factor Tu GTP binding domain KDW03_05885 PF03144 Elongation factor Tu domain 2 KDW03_05890 PF00338 Ribosomal protein S10p/S20e KDW03_05895 PF00297 Ribosomal protein L3 KDW03_05900 PF00573 Ribosomal protein L4/L1 family KDW03_05905 PF00276 Ribosomal protein L23 KDW03_05910 PF00181 Ribosomal Proteins L2, RNA binding domain KDW03_05910 PF03947 Ribosomal Proteins L2, C-terminal domain KDW03_05915 PF00203 Ribosomal protein S19 KDW03_05920 PF00237 Ribosomal protein L22p/L17e KDW03_05925 PF00189 Ribosomal protein S3, C-terminal domain KDW03_05925 PF07650 KH domain KDW03_05930 PF00252 Ribosomal protein L16p/L10e KDW03_05935 PF00831 Ribosomal L29 protein KDW03_05940 PF00366 Ribosomal protein S17 KDW03_05945 PF00238 Ribosomal protein L14p/L23e KDW03_05950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KDW03_05950 PF00467 KOW motif KDW03_05955 PF00281 Ribosomal protein L5 KDW03_05955 PF00673 ribosomal L5P family C-terminus KDW03_05960 PF00253 Ribosomal protein S14p/S29e KDW03_05965 PF00410 Ribosomal protein S8 KDW03_05970 PF00347 Ribosomal protein L6 KDW03_05975 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KDW03_05980 PF00333 Ribosomal protein S5, N-terminal domain KDW03_05980 PF03719 Ribosomal protein S5, C-terminal domain KDW03_05985 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KDW03_05990 PF00344 SecY translocase KDW03_05995 PF05191 Adenylate kinase, active site lid KDW03_06000 PF01176 Translation initiation factor 1A / IF-1 KDW03_06005 PF00444 Ribosomal protein L36 KDW03_06010 PF00416 Ribosomal protein S13/S18 KDW03_06015 PF00411 Ribosomal protein S11 KDW03_06020 PF01479 S4 domain KDW03_06020 PF00163 Ribosomal protein S4/S9 N-terminal domain KDW03_06025 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KDW03_06025 PF01000 RNA polymerase Rpb3/RpoA insert domain KDW03_06025 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KDW03_06030 PF01196 Ribosomal protein L17 KDW03_06060 PF00072 Response regulator receiver domain KDW03_06060 PF01966 HD domain KDW03_06075 PF00534 Glycosyl transferases group 1 KDW03_06075 PF13439 Glycosyltransferase Family 4 KDW03_06080 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KDW03_06090 PF00128 Alpha amylase, catalytic domain KDW03_06090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_06090 PF03714 Bacterial pullanase-associated domain KDW03_06105 PF10509 Galactokinase galactose-binding signature KDW03_06105 PF08544 GHMP kinases C terminal KDW03_06105 PF00288 GHMP kinases N terminal domain KDW03_06110 PF00128 Alpha amylase, catalytic domain KDW03_06110 PF00686 Starch binding domain KDW03_06110 PF01833 IPT/TIG domain KDW03_06115 PF00005 ABC transporter KDW03_06115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KDW03_06120 PF00005 ABC transporter KDW03_06120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KDW03_06125 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_06125 PF12911 N-terminal TM domain of oligopeptide transport permease C KDW03_06130 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_06135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KDW03_06140 PF00872 Transposase, Mutator family KDW03_06145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KDW03_06145 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_06155 PF00872 Transposase, Mutator family KDW03_06165 PF00872 Transposase, Mutator family KDW03_06170 PF00813 FliP family KDW03_06175 PF01313 Bacterial export proteins, family 3 KDW03_06180 PF01311 Bacterial export proteins, family 1 KDW03_06185 PF01312 FlhB HrpN YscU SpaS Family KDW03_06190 PF00771 FHIPEP family KDW03_06195 PF00448 SRP54-type protein, GTPase domain KDW03_06200 PF10609 NUBPL iron-transfer P-loop NTPase KDW03_06205 PF00588 SpoU rRNA Methylase family KDW03_06205 PF08032 RNA 2'-O ribose methyltransferase substrate binding KDW03_06210 PF02618 YceG-like family KDW03_06215 PF13277 YmdB-like protein KDW03_06230 PF00682 HMGL-like KDW03_06230 PF08502 LeuA allosteric (dimerisation) domain KDW03_06235 PF08245 Mur ligase middle domain KDW03_06250 PF12419 SNF2 Helicase protein KDW03_06250 PF00176 SNF2 family N-terminal domain KDW03_06250 PF00271 Helicase conserved C-terminal domain KDW03_06265 PF00872 Transposase, Mutator family KDW03_06280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KDW03_06280 PF00925 GTP cyclohydrolase II KDW03_06285 PF02594 Uncharacterised ACR, YggU family COG1872 KDW03_06295 PF03807 NADP oxidoreductase coenzyme F420-dependent KDW03_06295 PF14748 Pyrroline-5-carboxylate reductase dimerisation KDW03_06300 PF00202 Aminotransferase class-III KDW03_06305 PF02938 GAD domain KDW03_06305 PF00152 tRNA synthetases class II (D, K and N) KDW03_06305 PF01336 OB-fold nucleic acid binding domain KDW03_06315 PF02542 YgbB family KDW03_06320 PF10502 Signal peptidase, peptidase S26 KDW03_06325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_06325 PF12282 Signal transduction histidine kinase KDW03_06325 PF07568 Histidine kinase KDW03_06340 PF02599 Global regulator protein family KDW03_06345 PF02623 FliW protein KDW03_06350 PF00700 Bacterial flagellin C-terminal helical region KDW03_06350 PF00669 Bacterial flagellin N-terminal helical region KDW03_06355 PF07196 Flagellin hook IN motif KDW03_06355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KDW03_06480 PF00698 Acyl transferase domain KDW03_06485 PF07977 FabA-like domain KDW03_06495 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KDW03_06500 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KDW03_06500 PF10135 Rod binding protein KDW03_06505 PF02511 Thymidylate synthase complementing protein KDW03_06510 PF00155 Aminotransferase class I and II KDW03_06515 PF01078 Magnesium chelatase, subunit ChlI KDW03_06515 PF13335 Magnesium chelatase, subunit ChlI C-terminal KDW03_06525 PF02154 Flagellar motor switch protein FliM KDW03_06525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KDW03_06530 PF04509 CheC-like family KDW03_06530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KDW03_06545 PF00579 tRNA synthetases class I (W and Y) KDW03_06550 PF02616 Segregation and condensation protein ScpA KDW03_06555 PF04079 Segregation and condensation complex subunit ScpB KDW03_06560 PF00800 Prephenate dehydratase KDW03_06560 PF01817 Chorismate mutase type II KDW03_06560 PF01842 ACT domain KDW03_06565 PF00572 Ribosomal protein L13 KDW03_06570 PF00380 Ribosomal protein S9/S16 KDW03_06575 PF00589 Phage integrase family KDW03_06575 PF02899 Phage integrase, N-terminal SAM-like domain KDW03_06580 PF00950 ABC 3 transport family KDW03_06585 PF00005 ABC transporter KDW03_06590 PF01297 Zinc-uptake complex component A periplasmic KDW03_06595 PF02811 PHP domain KDW03_06595 PF14579 Helix-hairpin-helix motif KDW03_06595 PF07733 Bacterial DNA polymerase III alpha NTPase domain KDW03_06595 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KDW03_06605 PF04055 Radical SAM superfamily KDW03_06615 PF03477 ATP cone domain KDW03_06615 PF13597 Anaerobic ribonucleoside-triphosphate reductase KDW03_06640 PF07726 ATPase family associated with various cellular activities (AAA) KDW03_06640 PF17863 AAA lid domain KDW03_06645 PF00682 HMGL-like KDW03_06645 PF08502 LeuA allosteric (dimerisation) domain KDW03_06650 PF01177 Asp/Glu/Hydantoin racemase KDW03_06670 PF01894 Uncharacterised protein family UPF0047 KDW03_06675 PF00149 Calcineurin-like phosphoesterase KDW03_06695 PF00912 Transglycosylase KDW03_06695 PF00905 Penicillin binding protein transpeptidase domain KDW03_06700 PF00872 Transposase, Mutator family KDW03_06705 PF00872 Transposase, Mutator family KDW03_06715 PF07703 Alpha-2-macroglobulin bait region domain KDW03_06715 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain KDW03_06715 PF01835 MG2 domain KDW03_06715 PF00207 Alpha-2-macroglobulin family KDW03_06735 PF00872 Transposase, Mutator family KDW03_06740 PF00872 Transposase, Mutator family KDW03_06765 PF01555 DNA methylase KDW03_06775 PF05173 Dihydrodipicolinate reductase, C-terminus KDW03_06775 PF01113 Dihydrodipicolinate reductase, N-terminus KDW03_06780 PF00571 CBS domain KDW03_06780 PF00478 IMP dehydrogenase / GMP reductase domain KDW03_06790 PF09382 RQC domain KDW03_06790 PF00570 HRDC domain KDW03_06790 PF00271 Helicase conserved C-terminal domain KDW03_06790 PF16124 RecQ zinc-binding KDW03_06790 PF00270 DEAD/DEAH box helicase KDW03_06800 PF12392 Collagenase KDW03_06800 PF01136 Peptidase family U32 KDW03_06830 PF06968 Biotin and Thiamin Synthesis associated domain KDW03_06830 PF04055 Radical SAM superfamily KDW03_06855 PF00202 Aminotransferase class-III KDW03_06860 PF00490 Delta-aminolevulinic acid dehydratase KDW03_06865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KDW03_06865 PF10414 Sirohaem synthase dimerisation region KDW03_06865 PF14824 Sirohaem biosynthesis protein central KDW03_06870 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KDW03_06870 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KDW03_06870 PF01488 Shikimate / quinate 5-dehydrogenase KDW03_06875 PF10414 Sirohaem synthase dimerisation region KDW03_06875 PF14824 Sirohaem biosynthesis protein central KDW03_06875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KDW03_06880 PF00009 Elongation factor Tu GTP binding domain KDW03_06885 PF01507 Phosphoadenosine phosphosulfate reductase family KDW03_06890 PF00291 Pyridoxal-phosphate dependent enzyme KDW03_06905 PF01507 Phosphoadenosine phosphosulfate reductase family KDW03_06910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KDW03_06910 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KDW03_06930 PF13686 DsrE/DsrF/DrsH-like family KDW03_06935 PF00899 ThiF family KDW03_06940 PF01053 Cys/Met metabolism PLP-dependent enzyme KDW03_06950 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KDW03_06950 PF04324 BFD-like [2Fe-2S] binding domain KDW03_06950 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KDW03_06950 PF18267 Rubredoxin NAD+ reductase C-terminal domain KDW03_06950 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_06955 PF01226 Formate/nitrite transporter KDW03_06975 PF01098 Cell cycle protein KDW03_06980 PF01555 DNA methylase KDW03_06990 PF04851 Type III restriction enzyme, res subunit KDW03_07000 PF00982 Glycosyltransferase family 20 KDW03_07005 PF00534 Glycosyl transferases group 1 KDW03_07025 PF01479 S4 domain KDW03_07025 PF00849 RNA pseudouridylate synthase KDW03_07030 PF02903 Alpha amylase, N-terminal ig-like domain KDW03_07030 PF00128 Alpha amylase, catalytic domain KDW03_07035 PF01875 Memo-like protein KDW03_07040 PF00266 Aminotransferase class-V KDW03_07045 PF01648 4'-phosphopantetheinyl transferase superfamily KDW03_07050 PF00398 Ribosomal RNA adenine dimethylase KDW03_07055 PF00132 Bacterial transferase hexapeptide (six repeats) KDW03_07055 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KDW03_07065 PF00872 Transposase, Mutator family KDW03_07070 PF00872 Transposase, Mutator family KDW03_07095 PF02562 PhoH-like protein KDW03_07095 PF13638 PIN domain KDW03_07100 PF00849 RNA pseudouridylate synthase KDW03_07105 PF04055 Radical SAM superfamily KDW03_07110 PF00719 Inorganic pyrophosphatase KDW03_07115 PF00440 Bacterial regulatory proteins, tetR family KDW03_07125 PF00529 HlyD membrane-fusion protein of T1SS KDW03_07125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KDW03_07130 PF00873 AcrB/AcrD/AcrF family KDW03_07140 PF00468 Ribosomal protein L34 KDW03_07145 PF00825 Ribonuclease P KDW03_07150 PF01809 Putative membrane protein insertion efficiency factor KDW03_07155 PF00005 ABC transporter KDW03_07170 PF00535 Glycosyl transferase family 2 KDW03_07175 PF00117 Glutamine amidotransferase class-I KDW03_07175 PF06418 CTP synthase N-terminus KDW03_07180 PF02569 Pantoate-beta-alanine ligase KDW03_07185 PF00692 dUTPase KDW03_07190 PF01926 50S ribosome-binding GTPase KDW03_07190 PF01018 GTP1/OBG KDW03_07195 PF01472 PUA domain KDW03_07195 PF00696 Amino acid kinase family KDW03_07200 PF01784 NIF3 (NGG1p interacting factor 3) KDW03_07205 PF01361 Tautomerase enzyme KDW03_07230 PF02502 Ribose/Galactose Isomerase KDW03_07235 PF08501 Shikimate dehydrogenase substrate binding domain KDW03_07235 PF01488 Shikimate / quinate 5-dehydrogenase KDW03_07235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KDW03_07245 PF17862 AAA+ lid domain KDW03_07245 PF00004 ATPase family associated with various cellular activities (AAA) KDW03_07245 PF01434 Peptidase family M41 KDW03_07245 PF06480 FtsH Extracellular KDW03_07275 PF08334 Type II secretion system (T2SS), protein G KDW03_07275 PF07963 Prokaryotic N-terminal methylation motif KDW03_07305 PF00263 Bacterial type II and III secretion system protein KDW03_07305 PF03958 Bacterial type II/III secretion system short domain KDW03_07315 PF04055 Radical SAM superfamily KDW03_07315 PF01938 TRAM domain KDW03_07315 PF00919 Uncharacterized protein family UPF0004 KDW03_07335 PF00571 CBS domain KDW03_07335 PF00478 IMP dehydrogenase / GMP reductase domain KDW03_07350 PF00589 Phage integrase family KDW03_07350 PF02899 Phage integrase, N-terminal SAM-like domain KDW03_07360 PF07499 RuvA, C-terminal domain KDW03_07360 PF01330 RuvA N terminal domain KDW03_07400 PF05698 Bacterial trigger factor protein (TF) C-terminus KDW03_07400 PF05697 Bacterial trigger factor protein (TF) KDW03_07410 PF00633 Helix-hairpin-helix motif KDW03_07410 PF00730 HhH-GPD superfamily base excision DNA repair protein KDW03_07410 PF14815 NUDIX domain KDW03_07415 PF00929 Exonuclease KDW03_07415 PF13307 Helicase C-terminal domain KDW03_07415 PF04851 Type III restriction enzyme, res subunit KDW03_07420 PF09190 DALR domain KDW03_07420 PF01406 tRNA synthetases class I (C) catalytic domain KDW03_07425 PF18073 Rubredoxin metal binding domain KDW03_07430 PF18073 Rubredoxin metal binding domain KDW03_07440 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_07445 PF00700 Bacterial flagellin C-terminal helical region KDW03_07445 PF00669 Bacterial flagellin N-terminal helical region KDW03_07450 PF00700 Bacterial flagellin C-terminal helical region KDW03_07450 PF00669 Bacterial flagellin N-terminal helical region KDW03_07455 PF03772 Competence protein KDW03_07455 PF13567 Domain of unknown function (DUF4131) KDW03_07455 PF00753 Metallo-beta-lactamase superfamily KDW03_07465 PF00872 Transposase, Mutator family KDW03_07480 PF01569 PAP2 superfamily KDW03_07490 PF00753 Metallo-beta-lactamase superfamily KDW03_07520 PF01367 5'-3' exonuclease, C-terminal SAM fold KDW03_07520 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KDW03_07520 PF00476 DNA polymerase family A KDW03_07520 PF01612 3'-5' exonuclease KDW03_07525 PF00912 Transglycosylase KDW03_07530 PF00248 Aldo/keto reductase family KDW03_07535 PF02690 Na+/Pi-cotransporter KDW03_07540 PF00072 Response regulator receiver domain KDW03_07540 PF00486 Transcriptional regulatory protein, C terminal KDW03_07550 PF01497 Periplasmic binding protein KDW03_07555 PF01032 FecCD transport family KDW03_07560 PF00005 ABC transporter KDW03_07565 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KDW03_07570 PF02654 Cobalamin-5-phosphate synthase KDW03_07580 PF02277 Phosphoribosyltransferase KDW03_07600 PF00842 Alanine racemase, C-terminal domain KDW03_07600 PF01168 Alanine racemase, N-terminal domain KDW03_07620 PF02261 Aspartate decarboxylase KDW03_07630 PF04620 Flagellar filament outer layer protein Flaa KDW03_07645 PF07885 Ion channel KDW03_07645 PF02254 TrkA-N domain KDW03_07650 PF00027 Cyclic nucleotide-binding domain KDW03_07650 PF07885 Ion channel KDW03_07655 PF07228 Stage II sporulation protein E (SpoIIE) KDW03_07655 PF00672 HAMP domain KDW03_07670 PF02743 Cache domain KDW03_07670 PF00672 HAMP domain KDW03_07670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_07680 PF01894 Uncharacterised protein family UPF0047 KDW03_07685 PF12801 4Fe-4S binding domain KDW03_07690 PF01476 LysM domain KDW03_07690 PF01464 Transglycosylase SLT domain KDW03_07695 PF00011 Hsp20/alpha crystallin family KDW03_07700 PF00011 Hsp20/alpha crystallin family KDW03_07705 PF00011 Hsp20/alpha crystallin family KDW03_07710 PF01161 Phosphatidylethanolamine-binding protein KDW03_07715 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_07720 PF00206 Lyase KDW03_07730 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KDW03_07730 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KDW03_07750 PF00886 Ribosomal protein S16 KDW03_07755 PF05239 PRC-barrel domain KDW03_07755 PF01782 RimM N-terminal domain KDW03_07760 PF01746 tRNA (Guanine-1)-methyltransferase KDW03_07765 PF01245 Ribosomal protein L19 KDW03_07770 PF01351 Ribonuclease HII KDW03_07775 PF04608 Phosphatidylglycerophosphatase A KDW03_07780 PF01066 CDP-alcohol phosphatidyltransferase KDW03_07785 PF04055 Radical SAM superfamily KDW03_07785 PF18693 TRAM domain KDW03_07785 PF00919 Uncharacterized protein family UPF0004 KDW03_07820 PF03129 Anticodon binding domain KDW03_07820 PF02824 TGS domain KDW03_07820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KDW03_07820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KDW03_07825 PF00707 Translation initiation factor IF-3, C-terminal domain KDW03_07825 PF05198 Translation initiation factor IF-3, N-terminal domain KDW03_07830 PF01632 Ribosomal protein L35 KDW03_07835 PF00453 Ribosomal protein L20 KDW03_07845 PF08281 Sigma-70, region 4 KDW03_07845 PF04542 Sigma-70 region 2 KDW03_07955 PF00872 Transposase, Mutator family KDW03_07960 PF00872 Transposase, Mutator family KDW03_08020 PF00343 Carbohydrate phosphorylase KDW03_08025 PF00196 Bacterial regulatory proteins, luxR family KDW03_08030 PF08323 Starch synthase catalytic domain KDW03_08030 PF00534 Glycosyl transferases group 1 KDW03_08045 PF03717 Penicillin-binding Protein dimerisation domain KDW03_08045 PF00905 Penicillin binding protein transpeptidase domain KDW03_08065 PF00919 Uncharacterized protein family UPF0004 KDW03_08065 PF18693 TRAM domain KDW03_08065 PF04055 Radical SAM superfamily KDW03_08075 PF16363 GDP-mannose 4,6 dehydratase KDW03_08100 PF01872 RibD C-terminal domain KDW03_08100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KDW03_08105 PF00308 Bacterial dnaA protein KDW03_08105 PF08299 Bacterial dnaA protein helix-turn-helix KDW03_08105 PF11638 DnaA N-terminal domain KDW03_08115 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain KDW03_08120 PF17871 AAA lid domain KDW03_08120 PF02861 Clp amino terminal domain, pathogenicity island component KDW03_08120 PF10431 C-terminal, D2-small domain, of ClpB protein KDW03_08120 PF00004 ATPase family associated with various cellular activities (AAA) KDW03_08120 PF07724 AAA domain (Cdc48 subfamily) KDW03_08125 PF02446 4-alpha-glucanotransferase KDW03_08130 PF00700 Bacterial flagellin C-terminal helical region KDW03_08130 PF00669 Bacterial flagellin N-terminal helical region KDW03_08135 PF00293 NUDIX domain KDW03_08140 PF01261 Xylose isomerase-like TIM barrel KDW03_08145 PF00365 Phosphofructokinase KDW03_08155 PF11849 Domain of unknown function (DUF3369) KDW03_08160 PF13302 Acetyltransferase (GNAT) domain KDW03_08160 PF00027 Cyclic nucleotide-binding domain KDW03_08170 PF00245 Alkaline phosphatase KDW03_08175 PF01551 Peptidase family M23 KDW03_08175 PF08525 Opacity-associated protein A N-terminal motif KDW03_08175 PF01476 LysM domain KDW03_08180 PF00809 Pterin binding enzyme KDW03_08190 PF00118 TCP-1/cpn60 chaperonin family KDW03_08195 PF07516 SecA Wing and Scaffold domain KDW03_08195 PF07517 SecA DEAD-like domain KDW03_08195 PF02810 SEC-C motif KDW03_08195 PF01043 SecA preprotein cross-linking domain KDW03_08200 PF00575 S1 RNA binding domain KDW03_08200 PF17876 Cold shock domain KDW03_08200 PF08206 Ribonuclease B OB domain KDW03_08200 PF00773 RNB domain KDW03_08210 PF01261 Xylose isomerase-like TIM barrel KDW03_08215 PF02581 Thiamine monophosphate synthase KDW03_08225 PF01740 STAS domain KDW03_08240 PF01869 BadF/BadG/BcrA/BcrD ATPase family KDW03_08250 PF00005 ABC transporter KDW03_08250 PF17755 UvrA DNA-binding domain KDW03_08250 PF17760 UvrA interaction domain KDW03_08270 PF02403 Seryl-tRNA synthetase N-terminal domain KDW03_08270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KDW03_08280 PF00764 Arginosuccinate synthase KDW03_08285 PF12169 DNA polymerase III subunits gamma and tau domain III KDW03_08285 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KDW03_08285 PF12170 DNA polymerase III tau subunit V interacting with alpha KDW03_08295 PF02132 RecR protein KDW03_08295 PF13662 Toprim domain KDW03_08305 PF02142 MGS-like domain KDW03_08305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KDW03_08305 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KDW03_08310 PF00691 OmpA family KDW03_08320 PF00465 Iron-containing alcohol dehydrogenase KDW03_08325 PF00924 Mechanosensitive ion channel KDW03_08345 PF00501 AMP-binding enzyme KDW03_08345 PF14535 AMP-binding enzyme C-terminal domain KDW03_08370 PF13492 GAF domain KDW03_08370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_08370 PF07730 Histidine kinase KDW03_08370 PF13185 GAF domain KDW03_08375 PF01740 STAS domain KDW03_08380 PF01070 FMN-dependent dehydrogenase KDW03_08385 PF00459 Inositol monophosphatase family KDW03_08400 PF02875 Mur ligase family, glutamate ligase domain KDW03_08400 PF08245 Mur ligase middle domain KDW03_08400 PF01225 Mur ligase family, catalytic domain KDW03_08410 PF00574 Clp protease KDW03_08415 PF06689 ClpX C4-type zinc finger KDW03_08415 PF10431 C-terminal, D2-small domain, of ClpB protein KDW03_08415 PF07724 AAA domain (Cdc48 subfamily) KDW03_08420 PF05362 Lon protease (S16) C-terminal proteolytic domain KDW03_08420 PF00004 ATPase family associated with various cellular activities (AAA) KDW03_08420 PF02190 ATP-dependent protease La (LON) substrate-binding domain KDW03_08435 PF00672 HAMP domain KDW03_08435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_08435 PF02743 Cache domain KDW03_08440 PF02743 Cache domain KDW03_08440 PF00672 HAMP domain KDW03_08440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_08455 PF01739 CheR methyltransferase, SAM binding domain KDW03_08460 PF01339 CheB methylesterase KDW03_08460 PF00072 Response regulator receiver domain KDW03_08465 PF01584 CheW-like domain KDW03_08465 PF02895 Signal transducing histidine kinase, homodimeric domain KDW03_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_08465 PF01627 Hpt domain KDW03_08465 PF07194 P2 response regulator binding domain KDW03_08470 PF01584 CheW-like domain KDW03_08480 PF00072 Response regulator receiver domain KDW03_08485 PF00480 ROK family KDW03_08505 PF01842 ACT domain KDW03_08505 PF00551 Formyl transferase KDW03_08510 PF00128 Alpha amylase, catalytic domain KDW03_08510 PF02806 Alpha amylase, C-terminal all-beta domain KDW03_08510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_08520 PF00578 AhpC/TSA family KDW03_08535 PF01259 SAICAR synthetase KDW03_08540 PF02615 Malate/L-lactate dehydrogenase KDW03_08550 PF01906 Putative heavy-metal-binding KDW03_08585 PF01025 GrpE KDW03_08590 PF00012 Hsp70 protein KDW03_08595 PF00226 DnaJ domain KDW03_08595 PF01556 DnaJ C terminal domain KDW03_08595 PF00684 DnaJ central domain KDW03_08600 PF03600 Citrate transporter KDW03_08605 PF00977 Histidine biosynthesis protein KDW03_08610 PF13419 Haloacid dehalogenase-like hydrolase KDW03_08615 PF00664 ABC transporter transmembrane region KDW03_08615 PF00005 ABC transporter KDW03_08630 PF06968 Biotin and Thiamin Synthesis associated domain KDW03_08630 PF04055 Radical SAM superfamily KDW03_08635 PF00206 Lyase KDW03_08635 PF10415 Fumarase C C-terminus KDW03_08650 PF00486 Transcriptional regulatory protein, C terminal KDW03_08650 PF00072 Response regulator receiver domain KDW03_08655 PF02465 Flagellar hook-associated protein 2 N-terminus KDW03_08655 PF07195 Flagellar hook-associated protein 2 C-terminus KDW03_08705 PF00872 Transposase, Mutator family KDW03_08710 PF00872 Transposase, Mutator family KDW03_08725 PF13175 AAA ATPase domain KDW03_08730 PF00291 Pyridoxal-phosphate dependent enzyme KDW03_08755 PF01545 Cation efflux family KDW03_08755 PF16916 Dimerisation domain of Zinc Transporter KDW03_08760 PF01427 D-ala-D-ala dipeptidase KDW03_08780 PF00749 tRNA synthetases class I (E and Q), catalytic domain KDW03_08785 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KDW03_08785 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KDW03_08785 PF13288 DXP reductoisomerase C-terminal domain KDW03_08790 PF02527 rRNA small subunit methyltransferase G KDW03_08795 PF00483 Nucleotidyl transferase KDW03_08810 PF00005 ABC transporter KDW03_08815 PF01219 Prokaryotic diacylglycerol kinase KDW03_08825 PF00456 Transketolase, thiamine diphosphate binding domain KDW03_08825 PF02779 Transketolase, pyrimidine binding domain KDW03_08825 PF02780 Transketolase, C-terminal domain KDW03_08830 PF02780 Transketolase, C-terminal domain KDW03_08830 PF02779 Transketolase, pyrimidine binding domain KDW03_08835 PF01018 GTP1/OBG KDW03_08835 PF01926 50S ribosome-binding GTPase KDW03_08835 PF04055 Radical SAM superfamily KDW03_08855 PF06508 Queuosine biosynthesis protein QueC KDW03_08865 PF00677 Lumazine binding domain KDW03_08875 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KDW03_08875 PF00953 Glycosyl transferase family 4 KDW03_08880 PF01871 AMMECR1 KDW03_08895 PF00483 Nucleotidyl transferase KDW03_08900 PF00156 Phosphoribosyl transferase domain KDW03_08905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KDW03_08910 PF05746 DALR anticodon binding domain KDW03_08910 PF02092 Glycyl-tRNA synthetase beta subunit KDW03_08915 PF11849 Domain of unknown function (DUF3369) KDW03_08920 PF00005 ABC transporter KDW03_08925 PF00565 Staphylococcal nuclease homologue KDW03_08930 PF01668 SmpB protein KDW03_08950 PF00128 Alpha amylase, catalytic domain KDW03_08960 PF00460 Flagella basal body rod protein KDW03_08965 PF00460 Flagella basal body rod protein KDW03_08965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KDW03_08970 PF02049 Flagellar hook-basal body complex protein FliE KDW03_08975 PF01514 Secretory protein of YscJ/FliF family KDW03_08975 PF08345 Flagellar M-ring protein C-terminal KDW03_08980 PF01706 FliG C-terminal domain KDW03_08980 PF14841 FliG middle domain KDW03_08980 PF14842 FliG N-terminal domain KDW03_08985 PF02108 Flagellar assembly protein FliH KDW03_08990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_08990 PF02874 ATP synthase alpha/beta family, beta-barrel domain KDW03_08990 PF18269 T3SS EscN ATPase C-terminal domain KDW03_09000 PF02464 Competence-damaged protein KDW03_09000 PF18146 Damage-inducible protein CinA KH domain KDW03_09000 PF00994 Probable molybdopterin binding domain KDW03_09040 PF06397 Desulfoferrodoxin, N-terminal domain KDW03_09040 PF01880 Desulfoferrodoxin KDW03_09055 PF00210 Ferritin-like domain KDW03_09060 PF02915 Rubrerythrin KDW03_09065 PF17092 Penicillin-binding protein OB-like domain KDW03_09065 PF00912 Transglycosylase KDW03_09065 PF00905 Penicillin binding protein transpeptidase domain KDW03_09075 PF02397 Bacterial sugar transferase KDW03_09080 PF01381 Helix-turn-helix KDW03_09085 PF00330 Aconitase family (aconitate hydratase) KDW03_09090 PF00694 Aconitase C-terminal domain KDW03_09095 PF00501 AMP-binding enzyme KDW03_09100 PF01895 PhoU domain KDW03_09105 PF00005 ABC transporter KDW03_09110 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_09115 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_09120 PF12849 PBP superfamily domain KDW03_09130 PF02348 Cytidylyltransferase KDW03_09150 PF00266 Aminotransferase class-V KDW03_09160 PF10609 NUBPL iron-transfer P-loop NTPase KDW03_09165 PF00872 Transposase, Mutator family KDW03_09185 PF01966 HD domain KDW03_09190 PF00132 Bacterial transferase hexapeptide (six repeats) KDW03_09195 PF00849 RNA pseudouridylate synthase KDW03_09195 PF01479 S4 domain KDW03_09200 PF16491 CAAX prenyl protease N-terminal, five membrane helices KDW03_09200 PF01435 Peptidase family M48 KDW03_09205 PF00425 chorismate binding enzyme KDW03_09215 PF01048 Phosphorylase superfamily KDW03_09225 PF00990 Diguanylate cyclase, GGDEF domain KDW03_09225 PF00072 Response regulator receiver domain KDW03_09230 PF00232 Glycosyl hydrolase family 1 KDW03_09255 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KDW03_09255 PF01676 Metalloenzyme superfamily KDW03_09265 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KDW03_09265 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_09280 PF00872 Transposase, Mutator family KDW03_09290 PF00872 Transposase, Mutator family KDW03_09335 PF00472 RF-1 domain KDW03_09335 PF03462 PCRF domain KDW03_09340 PF05175 Methyltransferase small domain KDW03_09340 PF17827 PrmC N-terminal domain KDW03_09355 PF00872 Transposase, Mutator family KDW03_09400 PF00027 Cyclic nucleotide-binding domain KDW03_09400 PF13545 Crp-like helix-turn-helix domain KDW03_09405 PF01264 Chorismate synthase KDW03_09410 PF01242 6-pyruvoyl tetrahydropterin synthase KDW03_09415 PF00293 NUDIX domain KDW03_09420 PF00156 Phosphoribosyl transferase domain KDW03_09425 PF00534 Glycosyl transferases group 1 KDW03_09425 PF00535 Glycosyl transferase family 2 KDW03_09430 PF01938 TRAM domain KDW03_09430 PF00919 Uncharacterized protein family UPF0004 KDW03_09430 PF04055 Radical SAM superfamily KDW03_09435 PF01501 Glycosyl transferase family 8 KDW03_09435 PF00535 Glycosyl transferase family 2 KDW03_09440 PF13439 Glycosyltransferase Family 4 KDW03_09440 PF00534 Glycosyl transferases group 1 KDW03_09445 PF01966 HD domain KDW03_09470 PF02405 Permease MlaE KDW03_09475 PF00005 ABC transporter KDW03_09475 PF09383 NIL domain KDW03_09495 PF02601 Exonuclease VII, large subunit KDW03_09495 PF13742 OB-fold nucleic acid binding domain KDW03_09500 PF01197 Ribosomal protein L31 KDW03_09515 PF00005 ABC transporter KDW03_09515 PF02687 FtsX-like permease family KDW03_09515 PF12704 MacB-like periplasmic core domain KDW03_09520 PF00005 ABC transporter KDW03_09520 PF02687 FtsX-like permease family KDW03_09520 PF12704 MacB-like periplasmic core domain KDW03_09540 PF03063 Prismane/CO dehydrogenase family KDW03_09545 PF12838 4Fe-4S dicluster domain KDW03_09545 PF11953 Domain of unknown function (DUF3470) KDW03_09575 PF02687 FtsX-like permease family KDW03_09575 PF00005 ABC transporter KDW03_09575 PF12704 MacB-like periplasmic core domain KDW03_09580 PF00005 ABC transporter KDW03_09600 PF01202 Shikimate kinase KDW03_09610 PF00462 Glutaredoxin KDW03_09620 PF02119 Flagellar P-ring protein KDW03_09630 PF00872 Transposase, Mutator family KDW03_09635 PF00872 Transposase, Mutator family KDW03_09690 PF01180 Dihydroorotate dehydrogenase KDW03_09695 PF17156 Gammaproteobacterial periplasmic sensor domain KDW03_09695 PF00990 Diguanylate cyclase, GGDEF domain KDW03_09705 PF08279 HTH domain KDW03_09705 PF03099 Biotin/lipoate A/B protein ligase family KDW03_09705 PF02237 Biotin protein ligase C terminal domain KDW03_09710 PF03458 UPF0126 domain KDW03_09720 PF13458 Periplasmic binding protein KDW03_09725 PF02653 Branched-chain amino acid transport system / permease component KDW03_09730 PF02653 Branched-chain amino acid transport system / permease component KDW03_09730 PF11862 Domain of unknown function (DUF3382) KDW03_09735 PF00005 ABC transporter KDW03_09735 PF12399 Branched-chain amino acid ATP-binding cassette transporter KDW03_09740 PF00005 ABC transporter KDW03_09745 PF02659 Putative manganese efflux pump KDW03_09750 PF00113 Enolase, C-terminal TIM barrel domain KDW03_09750 PF03952 Enolase, N-terminal domain KDW03_09765 PF00872 Transposase, Mutator family KDW03_09770 PF00872 Transposase, Mutator family KDW03_09780 PF03102 NeuB family KDW03_09780 PF08666 SAF domain KDW03_09850 PF00872 Transposase, Mutator family KDW03_09860 PF00266 Aminotransferase class-V KDW03_09865 PF01592 NifU-like N terminal domain KDW03_09865 PF04324 BFD-like [2Fe-2S] binding domain KDW03_09865 PF01106 NifU-like domain KDW03_09870 PF00633 Helix-hairpin-helix motif KDW03_09870 PF00730 HhH-GPD superfamily base excision DNA repair protein KDW03_09870 PF10576 Iron-sulfur binding domain of endonuclease III KDW03_09875 PF01168 Alanine racemase, N-terminal domain KDW03_09890 PF07726 ATPase family associated with various cellular activities (AAA) KDW03_09890 PF17863 AAA lid domain KDW03_09895 PF16916 Dimerisation domain of Zinc Transporter KDW03_09895 PF01545 Cation efflux family KDW03_09900 PF02559 CarD-like/TRCF domain KDW03_09915 PF00334 Nucleoside diphosphate kinase KDW03_09920 PF01965 DJ-1/PfpI family KDW03_09930 PF00133 tRNA synthetases class I (I, L, M and V) KDW03_09930 PF13603 Leucyl-tRNA synthetase, Domain 2 KDW03_09930 PF08264 Anticodon-binding domain of tRNA KDW03_09930 PF09334 tRNA synthetases class I (M) KDW03_09935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_09935 PF01751 Toprim domain KDW03_09935 PF00204 DNA gyrase B KDW03_09935 PF00986 DNA gyrase B subunit, carboxyl terminus KDW03_09945 PF02649 Type I GTP cyclohydrolase folE2 KDW03_09955 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KDW03_09960 PF01590 GAF domain KDW03_09960 PF02954 Bacterial regulatory protein, Fis family KDW03_09960 PF00158 Sigma-54 interaction domain KDW03_09965 PF00120 Glutamine synthetase, catalytic domain KDW03_09965 PF18318 Glutamine synthetase C-terminal domain KDW03_09965 PF12437 Glutamine synthetase type III N terminal KDW03_09970 PF00464 Serine hydroxymethyltransferase KDW03_09990 PF08668 HDOD domain KDW03_09995 PF16360 GTP-binding GTPase Middle Region KDW03_09995 PF13167 GTP-binding GTPase N-terminal KDW03_09995 PF01926 50S ribosome-binding GTPase KDW03_10005 PF04468 PSP1 C-terminal conserved region KDW03_10010 PF00708 Acylphosphatase KDW03_10025 PF00561 alpha/beta hydrolase fold KDW03_10035 PF18665 Tetracyclin repressor-like, C-terminal domain KDW03_10035 PF00440 Bacterial regulatory proteins, tetR family KDW03_10040 PF03176 MMPL family KDW03_10065 PF00135 Carboxylesterase family KDW03_10070 PF01557 Fumarylacetoacetate (FAA) hydrolase family KDW03_10075 PF17158 Membrane-associated sensor, integral membrane domain KDW03_10075 PF00990 Diguanylate cyclase, GGDEF domain KDW03_10085 PF02609 Exonuclease VII small subunit KDW03_10100 PF07298 NnrU protein KDW03_10110 PF00709 Adenylosuccinate synthetase KDW03_10115 PF00709 Adenylosuccinate synthetase KDW03_10120 PF13393 Histidyl-tRNA synthetase KDW03_10125 PF00795 Carbon-nitrogen hydrolase KDW03_10140 PF00872 Transposase, Mutator family KDW03_10150 PF03330 Lytic transglycolase KDW03_10165 PF01131 DNA topoisomerase KDW03_10165 PF01751 Toprim domain KDW03_10165 PF01396 Topoisomerase DNA binding C4 zinc finger KDW03_10175 PF03979 Sigma-70 factor, region 1.1 KDW03_10175 PF00140 Sigma-70 factor, region 1.2 KDW03_10175 PF04542 Sigma-70 region 2 KDW03_10175 PF04539 Sigma-70 region 3 KDW03_10175 PF04545 Sigma-70, region 4 KDW03_10180 PF10410 DnaB-helicase binding domain of primase KDW03_10180 PF01807 CHC2 zinc finger KDW03_10180 PF08275 DNA primase catalytic core, N-terminal domain KDW03_10185 PF02578 Multi-copper polyphenol oxidoreductase laccase KDW03_10210 PF01740 STAS domain KDW03_10210 PF00916 Sulfate permease family KDW03_10215 PF01026 TatD related DNase KDW03_10220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KDW03_10225 PF00571 CBS domain KDW03_10225 PF03471 Transporter associated domain KDW03_10225 PF01595 Cyclin M transmembrane N-terminal domain KDW03_10230 PF00571 CBS domain KDW03_10230 PF01595 Cyclin M transmembrane N-terminal domain KDW03_10230 PF03471 Transporter associated domain KDW03_10235 PF05958 tRNA (Uracil-5-)-methyltransferase KDW03_10235 PF01938 TRAM domain KDW03_10255 PF00216 Bacterial DNA-binding protein KDW03_10265 PF01713 Smr domain KDW03_10265 PF00488 MutS domain V KDW03_10270 PF00534 Glycosyl transferases group 1 KDW03_10270 PF13439 Glycosyltransferase Family 4 KDW03_10280 PF01098 Cell cycle protein KDW03_10290 PF00156 Phosphoribosyl transferase domain KDW03_10295 PF03840 Preprotein translocase SecG subunit KDW03_10300 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KDW03_10300 PF02542 YgbB family KDW03_10310 PF07687 Peptidase dimerisation domain KDW03_10310 PF01546 Peptidase family M20/M25/M40 KDW03_10320 PF00872 Transposase, Mutator family KDW03_10330 PF00512 His Kinase A (phospho-acceptor) domain KDW03_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_10330 PF02743 Cache domain KDW03_10335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_10335 PF00128 Alpha amylase, catalytic domain KDW03_10335 PF02806 Alpha amylase, C-terminal all-beta domain KDW03_10340 PF00672 HAMP domain KDW03_10340 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_10340 PF02743 Cache domain KDW03_10345 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_10355 PF01743 Poly A polymerase head domain KDW03_10355 PF12627 Probable RNA and SrmB- binding site of polymerase A KDW03_10355 PF13735 tRNA nucleotidyltransferase domain 2 putative KDW03_10365 PF01761 3-dehydroquinate synthase KDW03_10375 PF01103 Surface antigen KDW03_10375 PF07244 Surface antigen variable number repeat KDW03_10390 PF01555 DNA methylase KDW03_10400 PF09210 Domain of unknown function (DUF1957) KDW03_10400 PF03065 Glycosyl hydrolase family 57 KDW03_10405 PF02689 Helicase KDW03_10405 PF05970 PIF1-like helicase KDW03_10410 PF01926 50S ribosome-binding GTPase KDW03_10410 PF06071 Protein of unknown function (DUF933) KDW03_10420 PF03447 Homoserine dehydrogenase, NAD binding domain KDW03_10420 PF00742 Homoserine dehydrogenase KDW03_10420 PF01842 ACT domain KDW03_10435 PF12704 MacB-like periplasmic core domain KDW03_10435 PF02687 FtsX-like permease family KDW03_10440 PF12704 MacB-like periplasmic core domain KDW03_10440 PF02687 FtsX-like permease family KDW03_10445 PF18075 FtsX extracellular domain KDW03_10445 PF02687 FtsX-like permease family KDW03_10450 PF12704 MacB-like periplasmic core domain KDW03_10450 PF02687 FtsX-like permease family KDW03_10450 PF00005 ABC transporter KDW03_10460 PF02151 UvrB/uvrC motif KDW03_10460 PF01541 GIY-YIG catalytic domain KDW03_10460 PF08459 UvrC Helix-hairpin-helix N-terminal KDW03_10460 PF12826 Helix-hairpin-helix motif KDW03_10465 PF03544 Gram-negative bacterial TonB protein C-terminal KDW03_10485 PF00872 Transposase, Mutator family KDW03_10625 PF04055 Radical SAM superfamily KDW03_10640 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase KDW03_10660 PF00872 Transposase, Mutator family KDW03_10665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KDW03_10665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KDW03_10670 PF02743 Cache domain KDW03_10670 PF00672 HAMP domain KDW03_10670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_10680 PF02503 Polyphosphate kinase middle domain KDW03_10680 PF13090 Polyphosphate kinase C-terminal domain 2 KDW03_10680 PF13089 Polyphosphate kinase N-terminal domain KDW03_10680 PF17941 Polyphosphate kinase C-terminal domain 1 KDW03_10685 PF17820 PDZ domain KDW03_10685 PF03572 Peptidase family S41 KDW03_10685 PF01471 Putative peptidoglycan binding domain KDW03_10690 PF17848 Acetyl-coA carboxylase zinc finger domain KDW03_10690 PF01039 Carboxyl transferase domain KDW03_10695 PF00005 ABC transporter KDW03_10700 PF01556 DnaJ C terminal domain KDW03_10700 PF00684 DnaJ central domain KDW03_10700 PF00226 DnaJ domain KDW03_10705 PF02559 CarD-like/TRCF domain KDW03_10705 PF00270 DEAD/DEAH box helicase KDW03_10705 PF00271 Helicase conserved C-terminal domain KDW03_10705 PF03461 TRCF domain KDW03_10705 PF17757 UvrB interaction domain KDW03_10720 PF00672 HAMP domain KDW03_10720 PF00211 Adenylate and Guanylate cyclase catalytic domain KDW03_10740 PF00691 OmpA family KDW03_10740 PF05736 OprF membrane domain KDW03_10745 PF00550 Phosphopantetheine attachment site KDW03_10755 PF00117 Glutamine amidotransferase class-I KDW03_10755 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KDW03_10760 PF12002 MgsA AAA+ ATPase C terminal KDW03_10760 PF00004 ATPase family associated with various cellular activities (AAA) KDW03_10760 PF16193 AAA C-terminal domain KDW03_10765 PF12706 Beta-lactamase superfamily domain KDW03_10765 PF03099 Biotin/lipoate A/B protein ligase family KDW03_10795 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KDW03_10795 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KDW03_10805 PF03423 Carbohydrate binding domain (family 25) KDW03_10805 PF01373 Glycosyl hydrolase family 14 KDW03_10805 PF00128 Alpha amylase, catalytic domain KDW03_10820 PF00128 Alpha amylase, catalytic domain KDW03_10820 PF03423 Carbohydrate binding domain (family 25) KDW03_10820 PF01373 Glycosyl hydrolase family 14 KDW03_10825 PF02652 L-lactate permease KDW03_10830 PF00355 Rieske [2Fe-2S] domain KDW03_10840 PF13426 PAS domain KDW03_10840 PF13188 PAS domain KDW03_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_10840 PF00989 PAS fold KDW03_10840 PF00512 His Kinase A (phospho-acceptor) domain KDW03_10845 PF01171 PP-loop family KDW03_10855 PF00183 Hsp90 protein KDW03_10860 PF01765 Ribosome recycling factor KDW03_10865 PF01255 Putative undecaprenyl diphosphate synthase KDW03_10875 PF01416 tRNA pseudouridine synthase KDW03_10880 PF01022 Bacterial regulatory protein, arsR family KDW03_10890 PF00586 AIR synthase related protein, N-terminal domain KDW03_10890 PF02769 AIR synthase related protein, C-terminal domain KDW03_10890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KDW03_10900 PF01661 Macro domain KDW03_10920 PF08668 HDOD domain KDW03_10930 PF00475 Imidazoleglycerol-phosphate dehydratase KDW03_10935 PF00117 Glutamine amidotransferase class-I KDW03_10940 PF00977 Histidine biosynthesis protein KDW03_10945 PF04551 GcpE protein KDW03_10955 PF00756 Putative esterase KDW03_10955 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase KDW03_10980 PF01808 AICARFT/IMPCHase bienzyme KDW03_10980 PF02142 MGS-like domain KDW03_10995 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_11000 PF00528 Binding-protein-dependent transport system inner membrane component KDW03_11015 PF02844 Phosphoribosylglycinamide synthetase, N domain KDW03_11015 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KDW03_11015 PF02843 Phosphoribosylglycinamide synthetase, C domain KDW03_11020 PF01926 50S ribosome-binding GTPase KDW03_11020 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KDW03_11030 PF01145 SPFH domain / Band 7 family KDW03_11035 PF14489 QueF-like protein KDW03_11050 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KDW03_11050 PF00970 Oxidoreductase FAD-binding domain KDW03_11050 PF00175 Oxidoreductase NAD-binding domain KDW03_11055 PF04620 Flagellar filament outer layer protein Flaa KDW03_11065 PF01520 N-acetylmuramoyl-L-alanine amidase KDW03_11065 PF11741 AMIN domain KDW03_11070 PF03309 Type III pantothenate kinase KDW03_11075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KDW03_11075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KDW03_11080 PF02637 GatB domain KDW03_11080 PF02934 GatB/GatE catalytic domain KDW03_11100 PF01551 Peptidase family M23 KDW03_11100 PF08460 Bacterial SH3 domain KDW03_11105 PF00563 EAL domain KDW03_11105 PF01590 GAF domain KDW03_11105 PF00990 Diguanylate cyclase, GGDEF domain KDW03_11105 PF00360 Phytochrome region KDW03_11115 PF00565 Staphylococcal nuclease homologue KDW03_11120 PF12897 Alanine-glyoxylate amino-transferase KDW03_11125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KDW03_11125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KDW03_11130 PF12327 FtsZ family, C-terminal domain KDW03_11130 PF00091 Tubulin/FtsZ family, GTPase domain KDW03_11135 PF02491 SHS2 domain inserted in FTSA KDW03_11145 PF07478 D-ala D-ala ligase C-terminus KDW03_11145 PF01820 D-ala D-ala ligase N-terminus KDW03_11150 PF10371 Domain of unknown function KDW03_11150 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KDW03_11150 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KDW03_11150 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KDW03_11150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KDW03_11160 PF01565 FAD binding domain KDW03_11160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KDW03_11175 PF02543 Carbamoyltransferase N-terminus KDW03_11175 PF16861 Carbamoyltransferase C-terminus KDW03_11185 PF01966 HD domain KDW03_11185 PF11871 Domain of unknown function (DUF3391) KDW03_11210 PF00271 Helicase conserved C-terminal domain KDW03_11210 PF02151 UvrB/uvrC motif KDW03_11210 PF12344 Ultra-violet resistance protein B KDW03_11210 PF17757 UvrB interaction domain KDW03_11210 PF04851 Type III restriction enzyme, res subunit KDW03_11215 PF01225 Mur ligase family, catalytic domain KDW03_11215 PF02875 Mur ligase family, glutamate ligase domain KDW03_11215 PF08245 Mur ligase middle domain KDW03_11230 PF00289 Biotin carboxylase, N-terminal domain KDW03_11230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KDW03_11230 PF02785 Biotin carboxylase C-terminal domain KDW03_11235 PF00364 Biotin-requiring enzyme KDW03_11240 PF01132 Elongation factor P (EF-P) OB domain KDW03_11240 PF08207 Elongation factor P (EF-P) KOW-like domain KDW03_11240 PF09285 Elongation factor P, C-terminal KDW03_11245 PF00557 Metallopeptidase family M24 KDW03_11245 PF01321 Creatinase/Prolidase N-terminal domain KDW03_11255 PF01116 Fructose-bisphosphate aldolase class-II KDW03_11260 PF00753 Metallo-beta-lactamase superfamily KDW03_11265 PF00290 Tryptophan synthase alpha chain KDW03_11290 PF01728 FtsJ-like methyltransferase KDW03_11290 PF01479 S4 domain KDW03_11295 PF00563 EAL domain KDW03_11295 PF01590 GAF domain KDW03_11295 PF00990 Diguanylate cyclase, GGDEF domain KDW03_11295 PF00360 Phytochrome region KDW03_11300 PF02779 Transketolase, pyrimidine binding domain KDW03_11300 PF02780 Transketolase, C-terminal domain KDW03_11300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KDW03_11310 PF01434 Peptidase family M41 KDW03_11310 PF17862 AAA+ lid domain KDW03_11310 PF00004 ATPase family associated with various cellular activities (AAA) KDW03_11310 PF06480 FtsH Extracellular KDW03_11315 PF00156 Phosphoribosyl transferase domain KDW03_11330 PF00365 Phosphofructokinase KDW03_11335 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KDW03_11350 PF00072 Response regulator receiver domain KDW03_11350 PF00990 Diguanylate cyclase, GGDEF domain KDW03_11370 PF04474 Protein of unknown function (DUF554) KDW03_11375 PF01134 Glucose inhibited division protein A KDW03_11375 PF13932 GidA associated domain KDW03_11380 PF00990 Diguanylate cyclase, GGDEF domain KDW03_11385 PF00128 Alpha amylase, catalytic domain KDW03_11425 PF01702 Queuine tRNA-ribosyltransferase KDW03_11440 PF01842 ACT domain KDW03_11440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KDW03_11440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KDW03_11455 PF01975 Survival protein SurE KDW03_11465 PF08668 HDOD domain KDW03_11470 PF02834 LigT like Phosphoesterase KDW03_11475 PF03471 Transporter associated domain KDW03_11475 PF00571 CBS domain KDW03_11485 PF03129 Anticodon binding domain KDW03_11485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KDW03_11485 PF04073 Aminoacyl-tRNA editing domain KDW03_11490 PF00266 Aminotransferase class-V KDW03_11505 PF00872 Transposase, Mutator family KDW03_11510 PF00872 Transposase, Mutator family KDW03_11535 PF03600 Citrate transporter KDW03_11550 PF00881 Nitroreductase family KDW03_11555 PF13344 Haloacid dehalogenase-like hydrolase KDW03_11560 PF00465 Iron-containing alcohol dehydrogenase KDW03_11575 PF01740 STAS domain KDW03_11585 PF01914 MarC family integral membrane protein KDW03_11605 PF04545 Sigma-70, region 4 KDW03_11605 PF04539 Sigma-70 region 3 KDW03_11605 PF04542 Sigma-70 region 2 KDW03_11605 PF03979 Sigma-70 factor, region 1.1 KDW03_11605 PF00140 Sigma-70 factor, region 1.2 KDW03_11610 PF00218 Indole-3-glycerol phosphate synthase KDW03_11615 PF00591 Glycosyl transferase family, a/b domain KDW03_11615 PF02885 Glycosyl transferase family, helical bundle domain KDW03_11615 PF00117 Glutamine amidotransferase class-I KDW03_11620 PF01139 tRNA-splicing ligase RtcB KDW03_11625 PF00425 chorismate binding enzyme KDW03_11625 PF04715 Anthranilate synthase component I, N terminal region KDW03_11630 PF13302 Acetyltransferase (GNAT) domain KDW03_11630 PF00027 Cyclic nucleotide-binding domain KDW03_11635 PF01496 V-type ATPase 116kDa subunit family KDW03_11655 PF01813 ATP synthase subunit D KDW03_11660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_11660 PF02874 ATP synthase alpha/beta family, beta-barrel domain KDW03_11665 PF02874 ATP synthase alpha/beta family, beta-barrel domain KDW03_11665 PF16886 ATPsynthase alpha/beta subunit N-term extension KDW03_11665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_11690 PF00132 Bacterial transferase hexapeptide (six repeats) KDW03_11690 PF12804 MobA-like NTP transferase domain KDW03_11700 PF02535 ZIP Zinc transporter KDW03_11720 PF00872 Transposase, Mutator family KDW03_11735 PF03091 CutA1 divalent ion tolerance protein KDW03_11760 PF02223 Thymidylate kinase KDW03_11765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KDW03_11765 PF00128 Alpha amylase, catalytic domain KDW03_11785 PF00005 ABC transporter KDW03_11800 PF02895 Signal transducing histidine kinase, homodimeric domain KDW03_11800 PF01584 CheW-like domain KDW03_11800 PF01627 Hpt domain KDW03_11800 PF07194 P2 response regulator binding domain KDW03_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KDW03_11810 PF01584 CheW-like domain KDW03_11815 PF00072 Response regulator receiver domain KDW03_11820 PF01739 CheR methyltransferase, SAM binding domain KDW03_11820 PF03705 CheR methyltransferase, all-alpha domain KDW03_11825 PF01339 CheB methylesterase KDW03_11825 PF00072 Response regulator receiver domain KDW03_11830 PF02743 Cache domain KDW03_11830 PF00672 HAMP domain KDW03_11830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KDW03_11845 PF02355 Protein export membrane protein KDW03_11850 PF02355 Protein export membrane protein KDW03_11855 PF02699 Preprotein translocase subunit KDW03_11860 PF00224 Pyruvate kinase, barrel domain KDW03_11860 PF00391 PEP-utilising enzyme, mobile domain KDW03_11860 PF02887 Pyruvate kinase, alpha/beta domain KDW03_11880 PF00438 S-adenosylmethionine synthetase, N-terminal domain KDW03_11880 PF02772 S-adenosylmethionine synthetase, central domain KDW03_11880 PF02773 S-adenosylmethionine synthetase, C-terminal domain KDW03_11885 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KDW03_11885 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KDW03_11885 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KDW03_11890 PF16363 GDP-mannose 4,6 dehydratase KDW03_11915 PF00890 FAD binding domain KDW03_11915 PF02910 Fumarate reductase flavoprotein C-term KDW03_11920 PF00557 Metallopeptidase family M24 KDW03_11935 PF02146 Sir2 family KDW03_11940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KDW03_11940 PF07992 Pyridine nucleotide-disulphide oxidoreductase KDW03_11945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KDW03_11945 PF07497 Rho termination factor, RNA-binding domain KDW03_11945 PF07498 Rho termination factor, N-terminal domain KDW03_11955 PF00156 Phosphoribosyl transferase domain KDW03_11960 PF01380 SIS domain KDW03_11965 PF02075 Crossover junction endodeoxyribonuclease RuvC KDW03_11970 PF04127 DNA / pantothenate metabolism flavoprotein KDW03_11970 PF02441 Flavoprotein KDW03_11980 PF00155 Aminotransferase class I and II KDW03_11985 PF01634 ATP phosphoribosyltransferase KDW03_11990 PF00830 Ribosomal L28 family KDW03_12000 PF02629 CoA binding domain KDW03_12000 PF06971 Putative DNA-binding protein N-terminus KDW03_12005 PF13419 Haloacid dehalogenase-like hydrolase KDW03_12030 PF01138 3' exoribonuclease family, domain 1 KDW03_12030 PF00013 KH domain KDW03_12030 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KDW03_12030 PF00575 S1 RNA binding domain KDW03_12030 PF03725 3' exoribonuclease family, domain 2 KDW03_12035 PF00312 Ribosomal protein S15 KDW03_12040 PF06574 FAD synthetase KDW03_12040 PF01687 Riboflavin kinase KDW03_12045 PF13419 Haloacid dehalogenase-like hydrolase KDW03_12050 PF03023 Lipid II flippase MurJ KDW03_12060 PF00701 Dihydrodipicolinate synthetase family KDW03_12065 PF00501 AMP-binding enzyme KDW03_12065 PF13193 AMP-binding enzyme C-terminal domain KDW03_12080 PF00318 Ribosomal protein S2 KDW03_12085 PF00889 Elongation factor TS KDW03_12090 PF00696 Amino acid kinase family KDW03_12100 PF00814 Glycoprotease family KDW03_12105 PF04015 Domain of unknown function (DUF362) KDW03_12110 PF02401 LytB protein KDW03_12115 PF02224 Cytidylate kinase KDW03_12120 PF01842 ACT domain KDW03_12120 PF02153 Prephenate dehydrogenase KDW03_12125 PF18152 DAHP synthase ferredoxin-like domain KDW03_12125 PF00793 DAHP synthetase I family KDW03_12145 PF01171 PP-loop family KDW03_12145 PF11734 TilS substrate C-terminal domain KDW03_12150 PF01195 Peptidyl-tRNA hydrolase KDW03_12155 PF01386 Ribosomal L25p family KDW03_12155 PF14693 Ribosomal protein TL5, C-terminal domain KDW03_12160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KDW03_12160 PF14572 Phosphoribosyl synthetase-associated domain KDW03_12170 PF04026 SpoVG KDW03_12175 PF00288 GHMP kinases N terminal domain KDW03_12180 PF01063 Amino-transferase class IV KDW03_12185 PF00005 ABC transporter KDW03_12190 PF02687 FtsX-like permease family KDW03_12190 PF12704 MacB-like periplasmic core domain KDW03_12215 PF00686 Starch binding domain KDW03_12215 PF00128 Alpha amylase, catalytic domain KDW03_12215 PF09081 Domain of unknown function (DUF1921)