locus-tag	class	description
D3A95_00005	PF02481	DNA recombination-mediator protein A
D3A95_00005	PF17782	DprA winged helix domain
D3A95_00015	PF00684	DnaJ central domain
D3A95_00015	PF00226	DnaJ domain
D3A95_00015	PF01556	DnaJ C terminal domain
D3A95_00020	PF03808	Glycosyl transferase WecB/TagA/CpsF family
D3A95_00030	PF00977	Histidine biosynthesis protein
D3A95_00035	PF00664	ABC transporter transmembrane region
D3A95_00035	PF00005	ABC transporter
D3A95_00040	PF13089	Polyphosphate kinase N-terminal domain
D3A95_00040	PF02503	Polyphosphate kinase middle domain
D3A95_00040	PF13090	Polyphosphate kinase C-terminal domain 2
D3A95_00040	PF17941	Polyphosphate kinase C-terminal domain 1
D3A95_00045	PF01336	OB-fold nucleic acid binding domain
D3A95_00045	PF00152	tRNA synthetases class II (D, K and N) 
D3A95_00050	PF02617	ATP-dependent Clp protease adaptor protein ClpS
D3A95_00060	PF01029	NusB family
D3A95_00060	PF01189	16S rRNA methyltransferase RsmB/F
D3A95_00070	PF02798	Glutathione S-transferase, N-terminal domain
D3A95_00085	PF02779	Transketolase, pyrimidine binding domain
D3A95_00085	PF02780	Transketolase, C-terminal domain
D3A95_00085	PF00364	Biotin-requiring enzyme
D3A95_00090	PF07549	SecD/SecF GG Motif
D3A95_00090	PF02355	Protein export membrane protein
D3A95_00095	PF02355	Protein export membrane protein
D3A95_00095	PF07549	SecD/SecF GG Motif
D3A95_00120	PF07465	Photosystem I protein M (PsaM)
D3A95_00130	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_00130	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_00130	PF00672	HAMP domain
D3A95_00145	PF01475	Ferric uptake regulator family
D3A95_00155	PF02875	Mur ligase family, glutamate ligase domain
D3A95_00155	PF08245	Mur ligase middle domain
D3A95_00165	PF00909	Ammonium Transporter Family
D3A95_00170	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_00175	PF00166	Chaperonin 10 Kd subunit
D3A95_00180	PF00118	TCP-1/cpn60 chaperonin family
D3A95_00185	PF17755	UvrA DNA-binding domain
D3A95_00185	PF17760	UvrA interaction domain
D3A95_00190	PF01842	ACT domain
D3A95_00190	PF00551	Formyl transferase
D3A95_00200	PF14489	QueF-like protein
D3A95_00210	PF02469	Fasciclin domain
D3A95_00215	PF00171	Aldehyde dehydrogenase family
D3A95_00220	PF00005	ABC transporter
D3A95_00220	PF06472	ABC transporter transmembrane region 2
D3A95_00235	PF04055	Radical SAM superfamily
D3A95_00240	PF00465	Iron-containing alcohol dehydrogenase 
D3A95_00240	PF00171	Aldehyde dehydrogenase family
D3A95_00245	PF03099	Biotin/lipoate A/B protein ligase family
D3A95_00260	PF02445	Quinolinate synthetase A protein
D3A95_00265	PF01593	Flavin containing amine oxidoreductase
D3A95_00270	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
D3A95_00270	PF01502	Phosphoribosyl-AMP cyclohydrolase
D3A95_00290	PF00498	FHA domain
D3A95_00290	PF00005	ABC transporter
D3A95_00290	PF01061	ABC-2 type transporter
D3A95_00295	PF01367	5'-3' exonuclease, C-terminal SAM fold
D3A95_00295	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
D3A95_00295	PF01612	3'-5' exonuclease
D3A95_00295	PF00476	DNA polymerase family A
D3A95_00300	PF05193	Peptidase M16 inactive domain
D3A95_00300	PF00675	Insulinase (Peptidase family M16)
D3A95_00305	PF02654	Cobalamin-5-phosphate synthase
D3A95_00335	PF00155	Aminotransferase class I and II
D3A95_00340	PF00486	Transcriptional regulatory protein, C terminal
D3A95_00340	PF00072	Response regulator receiver domain
D3A95_00345	PF01061	ABC-2 type transporter
D3A95_00345	PF00005	ABC transporter
D3A95_00345	PF00498	FHA domain
D3A95_00350	PF00202	Aminotransferase class-III
D3A95_00355	PF17975	Ribonucleotide reductase alpha domain
D3A95_00355	PF02867	Ribonucleotide reductase, barrel domain
D3A95_00365	PF00069	Protein kinase domain
D3A95_00365	PF00805	Pentapeptide repeats (8 copies)
D3A95_00385	PF01895	PhoU domain
D3A95_00440	PF01168	Alanine racemase, N-terminal domain
D3A95_00475	PF13288	DXP reductoisomerase C-terminal domain
D3A95_00475	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
D3A95_00475	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
D3A95_00480	PF02401	LytB protein
D3A95_00485	PF00588	SpoU rRNA Methylase family
D3A95_00485	PF08032	RNA 2'-O ribose methyltransferase substrate binding
D3A95_00495	PF00933	Glycosyl hydrolase family 3 N terminal domain
D3A95_00495	PF01915	Glycosyl hydrolase family 3 C-terminal domain
D3A95_00500	PF14306	PUA-like domain
D3A95_00500	PF01747	ATP-sulfurylase
D3A95_00505	PF00561	alpha/beta hydrolase fold
D3A95_00505	PF00364	Biotin-requiring enzyme
D3A95_00515	PF00534	Glycosyl transferases group 1
D3A95_00515	PF00862	Sucrose synthase
D3A95_00520	PF00072	Response regulator receiver domain
D3A95_00520	PF00486	Transcriptional regulatory protein, C terminal
D3A95_00525	PF00072	Response regulator receiver domain
D3A95_00525	PF01627	Hpt domain
D3A95_00525	PF00486	Transcriptional regulatory protein, C terminal
D3A95_00530	PF00421	Photosystem II protein
D3A95_00540	PF11780	Protein of unknown function (DUF3318)
D3A95_00560	PF02421	Ferrous iron transport protein B
D3A95_00560	PF07664	Ferrous iron transport protein B C terminus
D3A95_00560	PF07670	Nucleoside recognition
D3A95_00570	PF00210	Ferritin-like domain
D3A95_00580	PF00248	Aldo/keto reductase family
D3A95_00590	PF02571	Precorrin-6x reductase CbiJ/CobK
D3A95_00595	PF00920	Dehydratase family
D3A95_00615	PF01008	Initiation factor 2 subunit family
D3A95_00635	PF11987	Translation-initiation factor 2
D3A95_00635	PF04760	Translation initiation factor IF-2, N-terminal region
D3A95_00635	PF00009	Elongation factor Tu GTP binding domain
D3A95_00640	PF00497	Bacterial extracellular solute-binding proteins, family 3
D3A95_00655	PF00675	Insulinase (Peptidase family M16)
D3A95_00655	PF05193	Peptidase M16 inactive domain
D3A95_00660	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_00660	PF00498	FHA domain
D3A95_00660	PF00563	EAL domain
D3A95_00665	PF02397	Bacterial sugar transferase
D3A95_00680	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
D3A95_00680	PF02780	Transketolase, C-terminal domain
D3A95_00680	PF02779	Transketolase, pyrimidine binding domain
D3A95_00685	PF02801	Beta-ketoacyl synthase, C-terminal domain
D3A95_00685	PF00109	Beta-ketoacyl synthase, N-terminal domain
D3A95_00720	PF03099	Biotin/lipoate A/B protein ligase family
D3A95_00720	PF02237	Biotin protein ligase C terminal domain
D3A95_00740	PF02660	Glycerol-3-phosphate acyltransferase
D3A95_00745	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
D3A95_00745	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
D3A95_00750	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_00750	PF12911	N-terminal TM domain of oligopeptide transport permease C
D3A95_00760	PF06745	KaiC
D3A95_00760	PF18073	Rubredoxin metal binding domain
D3A95_00765	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
D3A95_00795	PF00069	Protein kinase domain
D3A95_00795	PF08239	Bacterial SH3 domain
D3A95_00825	PF10726	Protein of function (DUF2518)
D3A95_00840	PF01613	Flavin reductase like domain
D3A95_00840	PF00753	Metallo-beta-lactamase superfamily
D3A95_00845	PF02617	ATP-dependent Clp protease adaptor protein ClpS
D3A95_00865	PF01612	3'-5' exonuclease
D3A95_00865	PF00570	HRDC domain
D3A95_00885	PF01791	DeoC/LacD family aldolase
D3A95_00895	PF00633	Helix-hairpin-helix motif
D3A95_00895	PF14815	NUDIX domain
D3A95_00895	PF00730	HhH-GPD superfamily base excision DNA repair protein
D3A95_00900	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
D3A95_00910	PF02532	Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
D3A95_00915	PF16166	Chloroplast import apparatus Tic20-like
D3A95_00925	PF00574	Clp protease
D3A95_00930	PF10017	Histidine-specific methyltransferase, SAM-dependent
D3A95_00935	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_00945	PF00226	DnaJ domain
D3A95_00945	PF01556	DnaJ C terminal domain
D3A95_00945	PF00684	DnaJ central domain
D3A95_00950	PF13393	Histidyl-tRNA synthetase
D3A95_00955	PF01634	ATP phosphoribosyltransferase
D3A95_00960	PF03437	BtpA family
D3A95_00965	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
D3A95_00970	PF14437	MafB19-like deaminase
D3A95_00975	PF02533	Photosystem II 4 kDa reaction centre component
D3A95_00980	PF01709	Transcriptional regulator
D3A95_00985	PF10141	Single-strand DNA-specific exonuclease, C terminal domain
D3A95_00985	PF17768	RecJ OB domain
D3A95_00985	PF02272	DHHA1 domain
D3A95_00985	PF01368	DHH family
D3A95_00995	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
D3A95_00995	PF13378	Enolase C-terminal domain-like
D3A95_01000	PF17767	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
D3A95_01000	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
D3A95_01005	PF01467	Cytidylyltransferase-like
D3A95_01015	PF00795	Carbon-nitrogen hydrolase
D3A95_01015	PF02540	NAD synthase
D3A95_01020	PF00535	Glycosyl transferase family 2
D3A95_01020	PF13181	Tetratricopeptide repeat
D3A95_01025	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
D3A95_01025	PF01565	FAD binding domain 
D3A95_01030	PF01225	Mur ligase family, catalytic domain
D3A95_01030	PF02875	Mur ligase family, glutamate ligase domain
D3A95_01030	PF08245	Mur ligase middle domain
D3A95_01055	PF01116	Fructose-bisphosphate aldolase class-II
D3A95_01080	PF01169	Uncharacterized protein family UPF0016
D3A95_01095	PF08486	Stage II sporulation protein
D3A95_01100	PF00534	Glycosyl transferases group 1
D3A95_01105	PF00231	ATP synthase
D3A95_01135	PF04122	Putative cell wall binding repeat 2
D3A95_01135	PF01520	N-acetylmuramoyl-L-alanine amidase
D3A95_01190	PF01432	Peptidase family M3
D3A95_01195	PF10145	Phage-related minor tail protein
D3A95_01195	PF01551	Peptidase family M23
D3A95_01195	PF01464	Transglycosylase SLT domain
D3A95_01200	PF00905	Penicillin binding protein transpeptidase domain
D3A95_01200	PF03717	Penicillin-binding Protein dimerisation domain
D3A95_01210	PF00977	Histidine biosynthesis protein
D3A95_01215	PF09364	XFP N-terminal domain
D3A95_01215	PF03894	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
D3A95_01215	PF09363	XFP C-terminal domain
D3A95_01220	PF01026	TatD related DNase
D3A95_01225	PF01649	Ribosomal protein S20
D3A95_01230	PF00731	AIR carboxylase
D3A95_01240	PF00183	Hsp90 protein
D3A95_01245	PF04055	Radical SAM superfamily
D3A95_01255	PF00124	Photosynthetic reaction centre protein
D3A95_01275	PF00005	ABC transporter
D3A95_01285	PF00117	Glutamine amidotransferase class-I
D3A95_01285	PF00591	Glycosyl transferase family, a/b domain
D3A95_01285	PF02885	Glycosyl transferase family, helical bundle domain
D3A95_01305	PF08865	Domain of unknown function (DUF1830)
D3A95_01310	PF00919	Uncharacterized protein family UPF0004
D3A95_01310	PF01938	TRAM domain
D3A95_01310	PF04055	Radical SAM superfamily
D3A95_01315	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
D3A95_01315	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
D3A95_01320	PF00266	Aminotransferase class-V
D3A95_01335	PF01063	Amino-transferase class IV
D3A95_01345	PF00069	Protein kinase domain
D3A95_01375	PF01479	S4 domain
D3A95_01375	PF01728	FtsJ-like methyltransferase
D3A95_01380	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_01385	PF00578	AhpC/TSA family
D3A95_01385	PF10417	C-terminal domain of 1-Cys peroxiredoxin
D3A95_01400	PF00578	AhpC/TSA family
D3A95_01405	PF00293	NUDIX domain
D3A95_01405	PF09297	NADH pyrophosphatase zinc ribbon domain
D3A95_01410	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
D3A95_01415	PF07670	Nucleoside recognition
D3A95_01415	PF02421	Ferrous iron transport protein B
D3A95_01415	PF07664	Ferrous iron transport protein B C terminus
D3A95_01430	PF02405	Permease MlaE
D3A95_01440	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
D3A95_01450	PF00390	Malic enzyme, N-terminal domain
D3A95_01450	PF03949	Malic enzyme, NAD binding domain
D3A95_01460	PF00999	Sodium/hydrogen exchanger family
D3A95_01460	PF03471	Transporter associated domain
D3A95_01465	PF10693	Protein of unknown function (DUF2499)
D3A95_01470	PF08240	Alcohol dehydrogenase GroES-like domain
D3A95_01470	PF00107	Zinc-binding dehydrogenase
D3A95_01475	PF00145	C-5 cytosine-specific DNA methylase
D3A95_01475	PF13411	MerR HTH family regulatory protein
D3A95_01485	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
D3A95_01490	PF01066	CDP-alcohol phosphatidyltransferase
D3A95_01500	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
D3A95_01525	PF09150	Orange carotenoid protein, N-terminal 
D3A95_01540	PF00300	Histidine phosphatase superfamily (branch 1)
D3A95_01555	PF00072	Response regulator receiver domain
D3A95_01555	PF00486	Transcriptional regulatory protein, C terminal
D3A95_01570	PF01467	Cytidylyltransferase-like
D3A95_01580	PF14403	Circularly permuted ATP-grasp type 2 
D3A95_01580	PF04168	A predicted alpha-helical domain with a conserved ER motif.
D3A95_01595	PF00676	Dehydrogenase E1 component
D3A95_01600	PF01569	PAP2 superfamily
D3A95_01610	PF13580	SIS domain
D3A95_01625	PF02570	Precorrin-8X methylmutase
D3A95_01630	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
D3A95_01645	PF02082	Transcriptional regulator
D3A95_01655	PF00829	Ribosomal prokaryotic L21 protein
D3A95_01660	PF01016	Ribosomal L27 protein
D3A95_01680	PF00005	ABC transporter
D3A95_01680	PF08402	TOBE domain
D3A95_01705	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
D3A95_01720	PF00330	Aconitase family (aconitate hydratase)
D3A95_01720	PF06434	Aconitate hydratase 2 N-terminus
D3A95_01720	PF11791	Aconitate B N-terminal domain
D3A95_01725	PF13614	AAA domain
D3A95_01730	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
D3A95_01730	PF01409	tRNA synthetases class II core domain (F)
D3A95_01755	PF01218	Coproporphyrinogen III oxidase
D3A95_01760	PF05140	ResB-like family 
D3A95_01770	PF00403	Heavy-metal-associated domain
D3A95_01820	PF11805	Protein of unknown function (DUF3326)
D3A95_01825	PF13180	PDZ domain
D3A95_01830	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
D3A95_01835	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
D3A95_01840	PF12838	4Fe-4S dicluster domain
D3A95_01845	PF00146	NADH dehydrogenase
D3A95_01850	PF01979	Amidohydrolase family
D3A95_01855	PF01370	NAD dependent epimerase/dehydratase family
D3A95_01860	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
D3A95_01860	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
D3A95_01860	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
D3A95_01865	PF01351	Ribonuclease HII
D3A95_01875	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
D3A95_01875	PF03483	B3/4 domain
D3A95_01875	PF03484	tRNA synthetase B5 domain
D3A95_01875	PF03147	Ferredoxin-fold anticodon binding domain
D3A95_01875	PF01588	Putative tRNA binding domain
D3A95_01880	PF06968	Biotin and Thiamin Synthesis associated domain
D3A95_01880	PF04055	Radical SAM superfamily
D3A95_01890	PF00398	Ribosomal RNA adenine dimethylase
D3A95_01895	PF00113	Enolase, C-terminal TIM barrel domain
D3A95_01895	PF03952	Enolase, N-terminal domain
D3A95_01900	PF00403	Heavy-metal-associated domain
D3A95_01905	PF01479	S4 domain
D3A95_01905	PF00849	RNA pseudouridylate synthase
D3A95_01910	PF00664	ABC transporter transmembrane region
D3A95_01910	PF00005	ABC transporter
D3A95_01925	PF00773	RNB domain
D3A95_01940	PF00117	Glutamine amidotransferase class-I
D3A95_01940	PF00958	GMP synthase C terminal domain
D3A95_01960	PF01751	Toprim domain
D3A95_01960	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_01960	PF00986	DNA gyrase B subunit, carboxyl terminus
D3A95_01960	PF00204	DNA gyrase B
D3A95_01970	PF00849	RNA pseudouridylate synthase
D3A95_01975	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
D3A95_01975	PF00529	HlyD membrane-fusion protein of T1SS
D3A95_01985	PF00005	ABC transporter
D3A95_01985	PF12704	MacB-like periplasmic core domain
D3A95_01985	PF02687	FtsX-like permease family
D3A95_01990	PF00562	RNA polymerase Rpb2, domain 6
D3A95_01990	PF10385	RNA polymerase beta subunit external 1 domain
D3A95_01990	PF04560	RNA polymerase Rpb2, domain 7
D3A95_01990	PF04561	RNA polymerase Rpb2, domain 2
D3A95_01990	PF04565	RNA polymerase Rpb2, domain 3
D3A95_01990	PF04563	RNA polymerase beta subunit
D3A95_01995	PF04983	RNA polymerase Rpb1, domain 3
D3A95_01995	PF04997	RNA polymerase Rpb1, domain 1
D3A95_01995	PF00623	RNA polymerase Rpb1, domain 2
D3A95_02000	PF04983	RNA polymerase Rpb1, domain 3
D3A95_02000	PF05000	RNA polymerase Rpb1, domain 4
D3A95_02000	PF04998	RNA polymerase Rpb1, domain 5
D3A95_02005	PF01435	Peptidase family M48
D3A95_02035	PF16363	GDP-mannose 4,6 dehydratase
D3A95_02040	PF01370	NAD dependent epimerase/dehydratase family
D3A95_02055	PF13614	AAA domain
D3A95_02080	PF00069	Protein kinase domain
D3A95_02085	PF00498	FHA domain
D3A95_02085	PF12773	Double zinc ribbon
D3A95_02090	PF00005	ABC transporter
D3A95_02095	PF00873	AcrB/AcrD/AcrF family
D3A95_02100	PF00343	Carbohydrate phosphorylase
D3A95_02100	PF11897	Protein of unknown function (DUF3417)
D3A95_02110	PF13636	RNA-binding PUA-like domain of methyltransferase RsmF
D3A95_02110	PF01189	16S rRNA methyltransferase RsmB/F
D3A95_02110	PF17125	N-terminal domain of 16S rRNA methyltransferase RsmF
D3A95_02120	PF07683	Cobalamin synthesis protein cobW C-terminal domain
D3A95_02120	PF02492	CobW/HypB/UreG, nucleotide-binding domain
D3A95_02125	PF00395	S-layer homology domain
D3A95_02125	PF04966	Carbohydrate-selective porin, OprB family
D3A95_02130	PF02272	DHHA1 domain
D3A95_02130	PF17768	RecJ OB domain
D3A95_02130	PF01368	DHH family
D3A95_02130	PF10141	Single-strand DNA-specific exonuclease, C terminal domain
D3A95_02135	PF05969	Photosystem II complex subunit Ycf12
D3A95_02140	PF02540	NAD synthase
D3A95_02150	PF01225	Mur ligase family, catalytic domain
D3A95_02150	PF02875	Mur ligase family, glutamate ligase domain
D3A95_02150	PF08245	Mur ligase middle domain
D3A95_02160	PF01380	SIS domain
D3A95_02170	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_02185	PF02222	ATP-grasp domain
D3A95_02185	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain
D3A95_02190	PF13607	Succinyl-CoA ligase like flavodoxin domain
D3A95_02190	PF13380	CoA binding domain
D3A95_02190	PF00583	Acetyltransferase (GNAT) family
D3A95_02200	PF00561	alpha/beta hydrolase fold
D3A95_02210	PF00005	ABC transporter
D3A95_02210	PF00498	FHA domain
D3A95_02210	PF01061	ABC-2 type transporter
D3A95_02230	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
D3A95_02230	PF12706	Beta-lactamase superfamily domain
D3A95_02240	PF00486	Transcriptional regulatory protein, C terminal
D3A95_02240	PF00072	Response regulator receiver domain
D3A95_02245	PF12911	N-terminal TM domain of oligopeptide transport permease C
D3A95_02245	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_02255	PF03309	Type III pantothenate kinase
D3A95_02270	PF00924	Mechanosensitive ion channel
D3A95_02280	PF02938	GAD domain
D3A95_02280	PF01336	OB-fold nucleic acid binding domain
D3A95_02280	PF00152	tRNA synthetases class II (D, K and N) 
D3A95_02305	PF02075	Crossover junction endodeoxyribonuclease RuvC
D3A95_02310	PF07992	Pyridine nucleotide-disulphide oxidoreductase
D3A95_02320	PF11264	Thylakoid formation protein
D3A95_02330	PF12169	DNA polymerase III subunits gamma and tau domain III
D3A95_02340	PF11909	NADH-quinone oxidoreductase cyanobacterial subunit N
D3A95_02350	PF00069	Protein kinase domain
D3A95_02350	PF00805	Pentapeptide repeats (8 copies)
D3A95_02360	PF00069	Protein kinase domain
D3A95_02375	PF02153	Prephenate dehydrogenase
D3A95_02380	PF13180	PDZ domain
D3A95_02390	PF00072	Response regulator receiver domain
D3A95_02395	PF00005	ABC transporter
D3A95_02405	PF02553	Cobalt transport protein component CbiN
D3A95_02410	PF01891	Cobalt uptake substrate-specific transmembrane region
D3A95_02415	PF04472	Cell division protein SepF
D3A95_02425	PF02463	RecF/RecN/SMC N terminal domain
D3A95_02435	PF00072	Response regulator receiver domain
D3A95_02440	PF01546	Peptidase family M20/M25/M40
D3A95_02440	PF07687	Peptidase dimerisation domain
D3A95_02455	PF02224	Cytidylate kinase
D3A95_02455	PF02569	Pantoate-beta-alanine ligase
D3A95_02475	PF00140	Sigma-70 factor, region 1.2
D3A95_02475	PF04542	Sigma-70 region 2 
D3A95_02475	PF04539	Sigma-70 region 3
D3A95_02475	PF04545	Sigma-70, region 4
D3A95_02480	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
D3A95_02480	PF12557	Cob(I)alamin adenosyltransferase N terminal 
D3A95_02485	PF02567	Phenazine biosynthesis-like protein
D3A95_02490	PF00334	Nucleoside diphosphate kinase
D3A95_02495	PF03741	Integral membrane protein TerC family
D3A95_02510	PF00005	ABC transporter
D3A95_02515	PF11965	Domain of unknown function (DUF3479)
D3A95_02515	PF02514	CobN/Magnesium Chelatase
D3A95_02530	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_02535	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_02540	PF01842	ACT domain
D3A95_02540	PF03447	Homoserine dehydrogenase, NAD binding domain
D3A95_02540	PF00742	Homoserine dehydrogenase
D3A95_02550	PF02548	Ketopantoate hydroxymethyltransferase
D3A95_02555	PF00226	DnaJ domain
D3A95_02555	PF01556	DnaJ C terminal domain
D3A95_02560	PF00155	Aminotransferase class I and II
D3A95_02570	PF04012	PspA/IM30 family
D3A95_02575	PF02361	Cobalt transport protein
D3A95_02580	PF04715	Anthranilate synthase component I, N terminal region
D3A95_02580	PF00425	chorismate binding enzyme
D3A95_02595	PF07992	Pyridine nucleotide-disulphide oxidoreductase
D3A95_02600	PF00436	Single-strand binding protein family
D3A95_02605	PF01797	Transposase IS200 like
D3A95_02615	PF05685	Putative restriction endonuclease
D3A95_02630	PF01925	Sulfite exporter TauE/SafE
D3A95_02635	PF07992	Pyridine nucleotide-disulphide oxidoreductase
D3A95_02640	PF01555	DNA methylase
D3A95_02650	PF06470	SMC proteins Flexible Hinge Domain
D3A95_02650	PF02463	RecF/RecN/SMC N terminal domain
D3A95_02660	PF01668	SmpB protein
D3A95_02665	PF01081	KDPG and KHG aldolase
D3A95_02690	PF04029	2-phosphosulpholactate phosphatase
D3A95_02695	PF01040	UbiA prenyltransferase family
D3A95_02700	PF01544	CorA-like Mg2+ transporter protein
D3A95_02715	PF07085	DRTGG domain
D3A95_02740	PF00534	Glycosyl transferases group 1
D3A95_02740	PF13579	Glycosyl transferase 4-like domain
D3A95_02745	PF06838	Methionine gamma-lyase 
D3A95_02755	PF03776	Septum formation topological specificity factor MinE
D3A95_02760	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
D3A95_02765	PF03775	Septum formation inhibitor MinC, C-terminal domain
D3A95_02775	PF07444	Ycf66 protein N-terminus
D3A95_02780	PF06596	Photosystem II reaction centre X protein (PsbX)
D3A95_02790	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
D3A95_02790	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
D3A95_02795	PF00115	Cytochrome C and Quinol oxidase polypeptide I
D3A95_02800	PF00510	Cytochrome c oxidase subunit III
D3A95_02820	PF00005	ABC transporter
D3A95_02830	PF03707	Bacterial signalling protein N terminal repeat
D3A95_02830	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_02830	PF00563	EAL domain
D3A95_02845	PF00579	tRNA synthetases class I (W and Y)
D3A95_02850	PF01433	Peptidase family M1 domain
D3A95_02850	PF11838	ERAP1-like C-terminal domain
D3A95_02855	PF02594	Uncharacterised ACR, YggU family COG1872
D3A95_02890	PF01113	Dihydrodipicolinate reductase, N-terminus
D3A95_02890	PF05173	Dihydrodipicolinate reductase, C-terminus
D3A95_02900	PF00909	Ammonium Transporter Family
D3A95_02905	PF02390	Putative methyltransferase 
D3A95_02915	PF12706	Beta-lactamase superfamily domain
D3A95_02945	PF12320	Type 5 capsule protein repressor C-terminal domain
D3A95_02945	PF00149	Calcineurin-like phosphoesterase
D3A95_02950	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
D3A95_02950	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
D3A95_02950	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
D3A95_02950	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
D3A95_02960	PF00730	HhH-GPD superfamily base excision DNA repair protein
D3A95_02960	PF00633	Helix-hairpin-helix motif
D3A95_02965	PF02163	Peptidase family M50
D3A95_02965	PF13180	PDZ domain
D3A95_02970	PF01039	Carboxyl transferase domain
D3A95_02970	PF17848	Acetyl-coA carboxylase zinc finger domain
D3A95_02985	PF03900	Porphobilinogen deaminase, C-terminal domain
D3A95_02985	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
D3A95_02990	PF17820	PDZ domain
D3A95_02990	PF02163	Peptidase family M50
D3A95_03000	PF00664	ABC transporter transmembrane region
D3A95_03000	PF00005	ABC transporter
D3A95_03005	PF00027	Cyclic nucleotide-binding domain
D3A95_03005	PF13545	Crp-like helix-turn-helix domain
D3A95_03040	PF00111	2Fe-2S iron-sulfur cluster binding domain
D3A95_03045	PF00459	Inositol monophosphatase family
D3A95_03055	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_03055	PF00672	HAMP domain
D3A95_03055	PF13426	PAS domain
D3A95_03055	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_03060	PF03109	ABC1 family
D3A95_03075	PF02754	Cysteine-rich domain
D3A95_03075	PF13183	4Fe-4S dicluster domain
D3A95_03080	PF01565	FAD binding domain 
D3A95_03085	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_03085	PF00072	Response regulator receiver domain
D3A95_03095	PF00795	Carbon-nitrogen hydrolase
D3A95_03125	PF13545	Crp-like helix-turn-helix domain
D3A95_03130	PF00425	chorismate binding enzyme
D3A95_03130	PF04715	Anthranilate synthase component I, N terminal region
D3A95_03150	PF01327	Polypeptide deformylase
D3A95_03160	PF01597	Glycine cleavage H-protein
D3A95_03165	PF02653	Branched-chain amino acid transport system / permease component
D3A95_03170	PF02541	Ppx/GppA phosphatase family
D3A95_03180	PF00583	Acetyltransferase (GNAT) family
D3A95_03185	PF00586	AIR synthase related protein, N-terminal domain
D3A95_03185	PF02769	AIR synthase related protein, C-terminal domain
D3A95_03185	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
D3A95_03190	PF13537	Glutamine amidotransferase domain
D3A95_03190	PF00156	Phosphoribosyl transferase domain
D3A95_03195	PF00326	Prolyl oligopeptidase family
D3A95_03200	PF00677	Lumazine binding domain
D3A95_03205	PF00889	Elongation factor TS
D3A95_03210	PF00318	Ribosomal protein S2
D3A95_03215	PF13614	AAA domain
D3A95_03225	PF03459	TOBE domain
D3A95_03225	PF00005	ABC transporter
D3A95_03245	PF04012	PspA/IM30 family
D3A95_03255	PF00355	Rieske [2Fe-2S] domain
D3A95_03260	PF14870	Photosynthesis system II assembly factor YCF48
D3A95_03265	PF00301	Rubredoxin
D3A95_03270	PF17746	SfsA N-terminal OB domain
D3A95_03270	PF03749	Sugar fermentation stimulation protein RE domain
D3A95_03275	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
D3A95_03280	PF09367	CpeS-like protein
D3A95_03285	PF10792	Protein of unknown function (DUF2605)
D3A95_03290	PF01926	50S ribosome-binding GTPase
D3A95_03290	PF12631	MnmE helical domain
D3A95_03290	PF10396	GTP-binding protein TrmE N-terminus
D3A95_03305	PF02527	rRNA small subunit methyltransferase G
D3A95_03315	PF04966	Carbohydrate-selective porin, OprB family
D3A95_03315	PF00395	S-layer homology domain
D3A95_03320	PF04002	RadC-like JAB domain
D3A95_03320	PF00633	Helix-hairpin-helix motif
D3A95_03325	PF03976	Polyphosphate kinase 2 (PPK2)
D3A95_03335	PF00171	Aldehyde dehydrogenase family
D3A95_03340	PF09366	Protein of unknown function (DUF1997)
D3A95_03345	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_03350	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
D3A95_03350	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
D3A95_03355	PF00591	Glycosyl transferase family, a/b domain
D3A95_03355	PF02885	Glycosyl transferase family, helical bundle domain
D3A95_03365	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
D3A95_03365	PF07685	CobB/CobQ-like glutamine amidotransferase domain
D3A95_03380	PF00300	Histidine phosphatase superfamily (branch 1)
D3A95_03385	PF00291	Pyridoxal-phosphate dependent enzyme
D3A95_03395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_03395	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_03395	PF18698	Histidine kinase sensor domain
D3A95_03395	PF00989	PAS fold
D3A95_03395	PF00672	HAMP domain
D3A95_03400	PF00072	Response regulator receiver domain
D3A95_03400	PF00486	Transcriptional regulatory protein, C terminal
D3A95_03405	PF00689	Cation transporting ATPase, C-terminus
D3A95_03405	PF00690	Cation transporter/ATPase, N-terminus
D3A95_03425	PF00501	AMP-binding enzyme
D3A95_03425	PF13193	AMP-binding enzyme C-terminal domain
D3A95_03430	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
D3A95_03430	PF17770	Ribonuclease J C-terminal domain
D3A95_03430	PF00753	Metallo-beta-lactamase superfamily
D3A95_03435	PF00701	Dihydrodipicolinate synthetase family
D3A95_03445	PF14748	Pyrroline-5-carboxylate reductase dimerisation
D3A95_03445	PF03807	NADP oxidoreductase coenzyme F420-dependent
D3A95_03450	PF04472	Cell division protein SepF
D3A95_03455	PF00672	HAMP domain
D3A95_03455	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_03455	PF08448	PAS fold
D3A95_03455	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_03455	PF16767	Sensor domain of alginate biosynthesis sensor protein KinB
D3A95_03460	PF01641	SelR domain
D3A95_03465	PF00425	chorismate binding enzyme
D3A95_03475	PF00970	Oxidoreductase FAD-binding domain
D3A95_03475	PF01383	CpcD/allophycocyanin linker domain
D3A95_03475	PF00175	Oxidoreductase NAD-binding domain 
D3A95_03480	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_03480	PF05230	MASE2 domain
D3A95_03495	PF00312	Ribosomal protein S15
D3A95_03500	PF03466	LysR substrate binding domain
D3A95_03500	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
D3A95_03505	PF00805	Pentapeptide repeats (8 copies)
D3A95_03505	PF00069	Protein kinase domain
D3A95_03515	PF06418	CTP synthase N-terminus
D3A95_03515	PF00117	Glutamine amidotransferase class-I
D3A95_03525	PF04055	Radical SAM superfamily
D3A95_03525	PF02310	B12 binding domain
D3A95_03525	PF13282	Domain of unknown function (DUF4070)
D3A95_03530	PF00149	Calcineurin-like phosphoesterase
D3A95_03535	PF00892	EamA-like transporter family
D3A95_03550	PF04073	Aminoacyl-tRNA editing domain
D3A95_03550	PF03129	Anticodon binding domain
D3A95_03550	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
D3A95_03565	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
D3A95_03575	PF00343	Carbohydrate phosphorylase
D3A95_03580	PF07690	Major Facilitator Superfamily
D3A95_03585	PF01761	3-dehydroquinate synthase
D3A95_03600	PF01029	NusB family
D3A95_03615	PF00684	DnaJ central domain
D3A95_03615	PF01556	DnaJ C terminal domain
D3A95_03615	PF00226	DnaJ domain
D3A95_03620	PF00012	Hsp70 protein
D3A95_03625	PF11016	Protein of unknown function (DUF2854)
D3A95_03630	PF04461	Protein of unknown function (DUF520)
D3A95_03635	PF13458	Periplasmic binding protein
D3A95_03645	PF00033	Cytochrome b/b6/petB
D3A95_03650	PF00032	Cytochrome b(C-terminal)/b6/petD
D3A95_03665	PF00270	DEAD/DEAH box helicase
D3A95_03665	PF00271	Helicase conserved C-terminal domain
D3A95_03665	PF16124	RecQ zinc-binding
D3A95_03680	PF13419	Haloacid dehalogenase-like hydrolase
D3A95_03695	PF01553	Acyltransferase
D3A95_03705	PF01430	Hsp33 protein
D3A95_03710	PF03819	MazG nucleotide pyrophosphohydrolase domain
D3A95_03715	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
D3A95_03725	PF00085	Thioredoxin
D3A95_03730	PF08078	PsaX family
D3A95_03740	PF00924	Mechanosensitive ion channel
D3A95_03745	PF00462	Glutaredoxin
D3A95_03745	PF08534	Redoxin
D3A95_03760	PF01916	Deoxyhypusine synthase
D3A95_03765	PF00005	ABC transporter
D3A95_03770	PF01297	Zinc-uptake complex component A periplasmic
D3A95_03775	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
D3A95_03785	PF10396	GTP-binding protein TrmE N-terminus
D3A95_03785	PF01926	50S ribosome-binding GTPase
D3A95_03785	PF12631	MnmE helical domain
D3A95_03790	PF00692	dUTPase
D3A95_03800	PF03485	Arginyl tRNA synthetase N terminal domain
D3A95_03800	PF05746	DALR anticodon binding domain
D3A95_03800	PF00750	tRNA synthetases class I (R)
D3A95_03810	PF03742	PetN 
D3A95_03820	PF00924	Mechanosensitive ion channel
D3A95_03820	PF12795	Mechanosensitive ion channel porin domain
D3A95_03820	PF12794	Mechanosensitive ion channel inner membrane domain 1
D3A95_03830	PF04545	Sigma-70, region 4
D3A95_03830	PF04542	Sigma-70 region 2 
D3A95_03830	PF04539	Sigma-70 region 3
D3A95_03830	PF00140	Sigma-70 factor, region 1.2
D3A95_03835	PF03099	Biotin/lipoate A/B protein ligase family
D3A95_03840	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
D3A95_03840	PF16321	Sigma 54 modulation/S30EA ribosomal protein C terminus
D3A95_03855	PF06298	Photosystem II protein Y (PsbY)
D3A95_03865	PF01098	Cell cycle protein
D3A95_03870	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
D3A95_03895	PF00132	Bacterial transferase hexapeptide (six repeats)
D3A95_03900	PF02504	Fatty acid synthesis protein
D3A95_03905	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
D3A95_03905	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
D3A95_03930	PF00682	HMGL-like
D3A95_03930	PF08502	LeuA allosteric (dimerisation) domain
D3A95_03935	PF00132	Bacterial transferase hexapeptide (six repeats)
D3A95_03935	PF06426	Serine acetyltransferase, N-terminal 
D3A95_03965	PF12826	Helix-hairpin-helix motif
D3A95_03965	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
D3A95_03965	PF03120	NAD-dependent DNA ligase OB-fold domain
D3A95_03965	PF01653	NAD-dependent DNA ligase adenylation domain
D3A95_03965	PF00533	BRCA1 C Terminus (BRCT) domain
D3A95_03970	PF01513	ATP-NAD kinase
D3A95_03975	PF05368	NmrA-like family
D3A95_03985	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
D3A95_04010	PF01521	Iron-sulphur cluster biosynthesis
D3A95_04015	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
D3A95_04015	PF07992	Pyridine nucleotide-disulphide oxidoreductase
D3A95_04020	PF04015	Domain of unknown function (DUF362) 
D3A95_04040	PF00011	Hsp20/alpha crystallin family
D3A95_04050	PF00072	Response regulator receiver domain
D3A95_04050	PF01627	Hpt domain
D3A95_04050	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_04050	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_04050	PF00672	HAMP domain
D3A95_04050	PF09984	Uncharacterised signal transduction histidine kinase domain (DUF2222)
D3A95_04055	PF02529	Cytochrome B6-F complex subunit 5
D3A95_04060	PF01926	50S ribosome-binding GTPase
D3A95_04060	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
D3A95_04075	PF10369	Small subunit of acetolactate synthase
D3A95_04080	PF00684	DnaJ central domain
D3A95_04080	PF01556	DnaJ C terminal domain
D3A95_04080	PF00226	DnaJ domain
D3A95_04085	PF01202	Shikimate kinase
D3A95_04100	PF01625	Peptide methionine sulfoxide reductase
D3A95_04110	PF16177	Acetyl-coenzyme A synthetase N-terminus
D3A95_04110	PF00501	AMP-binding enzyme
D3A95_04110	PF13193	AMP-binding enzyme C-terminal domain
D3A95_04125	PF00005	ABC transporter
D3A95_04130	PF02627	Carboxymuconolactone decarboxylase family
D3A95_04155	PF12327	FtsZ family, C-terminal domain
D3A95_04155	PF00091	Tubulin/FtsZ family, GTPase domain
D3A95_04160	PF00950	ABC 3 transport family
D3A95_04165	PF01940	Integral membrane protein DUF92
D3A95_04170	PF00535	Glycosyl transferase family 2
D3A95_04175	PF01609	Transposase DDE domain
D3A95_04185	PF01531	Glycosyl transferase family 11
D3A95_04190	PF00535	Glycosyl transferase family 2
D3A95_04195	PF00535	Glycosyl transferase family 2
D3A95_04200	PF01207	Dihydrouridine synthase (Dus)
D3A95_04205	PF01228	Glycine radical
D3A95_04205	PF02901	Pyruvate formate lyase-like
D3A95_04210	PF12146	Serine aminopeptidase, S33
D3A95_04220	PF03193	RsgA GTPase
D3A95_04235	PF03471	Transporter associated domain
D3A95_04235	PF01595	Cyclin M transmembrane N-terminal domain
D3A95_04235	PF00571	CBS domain
D3A95_04255	PF02597	ThiS family
D3A95_04260	PF00291	Pyridoxal-phosphate dependent enzyme
D3A95_04265	PF00547	Urease, gamma subunit
D3A95_04270	PF01812	5-formyltetrahydrofolate cyclo-ligase family
D3A95_04275	PF02754	Cysteine-rich domain
D3A95_04280	PF00438	S-adenosylmethionine synthetase, N-terminal domain
D3A95_04280	PF02772	S-adenosylmethionine synthetase, central domain
D3A95_04280	PF02773	S-adenosylmethionine synthetase, C-terminal domain
D3A95_04295	PF00953	Glycosyl transferase family 4
D3A95_04295	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 
D3A95_04300	PF08240	Alcohol dehydrogenase GroES-like domain
D3A95_04300	PF00107	Zinc-binding dehydrogenase
D3A95_04305	PF06725	3D domain
D3A95_04305	PF03562	MltA specific insert domain
D3A95_04320	PF00121	Triosephosphate isomerase
D3A95_04330	PF13614	AAA domain
D3A95_04335	PF00664	ABC transporter transmembrane region
D3A95_04335	PF00005	ABC transporter
D3A95_04340	PF01926	50S ribosome-binding GTPase
D3A95_04340	PF12631	MnmE helical domain
D3A95_04340	PF10396	GTP-binding protein TrmE N-terminus
D3A95_04345	PF16639	Apocytochrome F, N-terminal
D3A95_04345	PF01333	Apocytochrome F, C-terminal
D3A95_04350	PF00355	Rieske [2Fe-2S] domain
D3A95_04360	PF00502	Phycobilisome protein
D3A95_04365	PF00502	Phycobilisome protein
D3A95_04370	PF01383	CpcD/allophycocyanin linker domain
D3A95_04380	PF00902	Sec-independent protein translocase protein (TatC)
D3A95_04385	PF00271	Helicase conserved C-terminal domain
D3A95_04385	PF00270	DEAD/DEAH box helicase
D3A95_04385	PF02559	CarD-like/TRCF domain
D3A95_04385	PF17757	UvrB interaction domain
D3A95_04385	PF03461	TRCF domain
D3A95_04390	PF04321	RmlD substrate binding domain
D3A95_04395	PF03109	ABC1 family
D3A95_04415	PF00936	BMC domain
D3A95_04420	PF03319	Ethanolamine utilisation protein EutN/carboxysome
D3A95_04425	PF00101	Ribulose bisphosphate carboxylase, small chain
D3A95_04435	PF05958	tRNA (Uracil-5-)-methyltransferase
D3A95_04435	PF01938	TRAM domain
D3A95_04470	PF01464	Transglycosylase SLT domain
D3A95_04470	PF14718	Soluble lytic murein transglycosylase L domain
D3A95_04485	PF00155	Aminotransferase class I and II
D3A95_04490	PF00448	SRP54-type protein, GTPase domain
D3A95_04490	PF02881	SRP54-type protein, helical bundle domain
D3A95_04495	PF00459	Inositol monophosphatase family
D3A95_04500	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
D3A95_04500	PF00005	ABC transporter
D3A95_04505	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_04505	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_04505	PF00989	PAS fold
D3A95_04510	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_04510	PF00360	Phytochrome region
D3A95_04510	PF01590	GAF domain
D3A95_04510	PF00563	EAL domain
D3A95_04520	PF02547	Queuosine biosynthesis protein
D3A95_04530	PF00795	Carbon-nitrogen hydrolase
D3A95_04540	PF00561	alpha/beta hydrolase fold
D3A95_04555	PF12706	Beta-lactamase superfamily domain
D3A95_04565	PF00266	Aminotransferase class-V
D3A95_04575	PF03707	Bacterial signalling protein N terminal repeat
D3A95_04575	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_04575	PF00563	EAL domain
D3A95_04590	PF03448	MgtE intracellular N domain
D3A95_04590	PF01769	Divalent cation transporter
D3A95_04590	PF00571	CBS domain
D3A95_04595	PF02308	MgtC family
D3A95_04600	PF00330	Aconitase family (aconitate hydratase)
D3A95_04610	PF01555	DNA methylase
D3A95_04615	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
D3A95_04615	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
D3A95_04620	PF00462	Glutaredoxin
D3A95_04630	PF00361	Proton-conducting membrane transporter
D3A95_04635	PF00361	Proton-conducting membrane transporter
D3A95_04635	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
D3A95_04635	PF01010	NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
D3A95_04650	PF02632	BioY family
D3A95_04655	PF02514	CobN/Magnesium Chelatase
D3A95_04660	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_04660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_04665	PF01121	Dephospho-CoA kinase
D3A95_04680	PF04055	Radical SAM superfamily
D3A95_04690	PF03707	Bacterial signalling protein N terminal repeat
D3A95_04690	PF00563	EAL domain
D3A95_04690	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_04695	PF03186	CobD/Cbib protein
D3A95_04715	PF02887	Pyruvate kinase, alpha/beta domain
D3A95_04715	PF00224	Pyruvate kinase, barrel domain
D3A95_04720	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
D3A95_04725	PF09115	DNA polymerase III, delta subunit, C terminal
D3A95_04730	PF00571	CBS domain
D3A95_04730	PF01743	Poly A polymerase head domain
D3A95_04745	PF01820	D-ala D-ala ligase N-terminus
D3A95_04745	PF07478	D-ala D-ala ligase C-terminus
D3A95_04755	PF02874	ATP synthase alpha/beta family, beta-barrel domain
D3A95_04755	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
D3A95_04760	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
D3A95_04760	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
D3A95_04770	PF01434	Peptidase family M41
D3A95_04770	PF17862	AAA+ lid domain
D3A95_04770	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_04770	PF06480	FtsH Extracellular
D3A95_04775	PF01523	Putative modulator of DNA gyrase
D3A95_04780	PF01386	Ribosomal L25p family
D3A95_04785	PF00709	Adenylosuccinate synthetase
D3A95_04795	PF01330	RuvA N terminal domain
D3A95_04795	PF07499	RuvA, C-terminal domain
D3A95_04800	PF18284	DNA methylase N-terminal domain
D3A95_04800	PF00145	C-5 cytosine-specific DNA methylase
D3A95_04815	PF01134	Glucose inhibited division protein A
D3A95_04815	PF13932	GidA associated domain
D3A95_04820	PF01774	UreD urease accessory protein
D3A95_04830	PF02254	TrkA-N domain
D3A95_04830	PF00999	Sodium/hydrogen exchanger family
D3A95_04835	PF01471	Putative peptidoglycan binding domain
D3A95_04835	PF10128	Glucose-6-phosphate dehydrogenase subunit
D3A95_04840	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
D3A95_04840	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
D3A95_04845	PF00316	Fructose-1-6-bisphosphatase, N-terminal domain
D3A95_04885	PF03441	FAD binding domain of DNA photolyase
D3A95_04885	PF00875	DNA photolyase
D3A95_04890	PF07689	KaiB domain
D3A95_04895	PF00437	Type II/IV secretion system protein
D3A95_04905	PF07690	Major Facilitator Superfamily
D3A95_04910	PF00664	ABC transporter transmembrane region
D3A95_04910	PF00005	ABC transporter
D3A95_04925	PF01965	DJ-1/PfpI family
D3A95_04930	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
D3A95_04935	PF01809	Putative membrane protein insertion efficiency factor
D3A95_04945	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
D3A95_04950	PF02719	Polysaccharide biosynthesis protein
D3A95_04965	PF00534	Glycosyl transferases group 1
D3A95_04965	PF08323	Starch synthase catalytic domain
D3A95_04970	PF00850	Histone deacetylase domain
D3A95_04980	PF02348	Cytidylyltransferase
D3A95_04995	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system
D3A95_05010	PF03102	NeuB family
D3A95_05010	PF08666	SAF domain
D3A95_05025	PF00072	Response regulator receiver domain
D3A95_05025	PF01627	Hpt domain
D3A95_05025	PF01584	CheW-like domain
D3A95_05025	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_05025	PF02895	Signal transducing histidine kinase, homodimeric domain
D3A95_05030	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
D3A95_05030	PF01590	GAF domain
D3A95_05040	PF00072	Response regulator receiver domain
D3A95_05045	PF14332	Domain of unknown function (DUF4388)
D3A95_05045	PF00072	Response regulator receiver domain
D3A95_05055	PF00395	S-layer homology domain
D3A95_05055	PF04966	Carbohydrate-selective porin, OprB family
D3A95_05070	PF04055	Radical SAM superfamily
D3A95_05075	PF00106	short chain dehydrogenase
D3A95_05080	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
D3A95_05080	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
D3A95_05085	PF00664	ABC transporter transmembrane region
D3A95_05085	PF00005	ABC transporter
D3A95_05090	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
D3A95_05090	PF00128	Alpha amylase, catalytic domain
D3A95_05090	PF02806	Alpha amylase, C-terminal all-beta domain
D3A95_05095	PF01180	Dihydroorotate dehydrogenase
D3A95_05105	PF00005	ABC transporter
D3A95_05110	PF00534	Glycosyl transferases group 1
D3A95_05110	PF00862	Sucrose synthase
D3A95_05115	PF01522	Polysaccharide deacetylase
D3A95_05130	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
D3A95_05130	PF00391	PEP-utilising enzyme, mobile domain
D3A95_05130	PF02896	PEP-utilising enzyme, TIM barrel domain
D3A95_05135	PF13291	ACT domain
D3A95_05135	PF04607	Region found in RelA / SpoT proteins
D3A95_05135	PF02824	TGS domain
D3A95_05145	PF00731	AIR carboxylase
D3A95_05150	PF08331	Domain of unknown function (DUF1730)
D3A95_05155	PF07884	Vitamin K epoxide reductase family
D3A95_05160	PF00072	Response regulator receiver domain
D3A95_05160	PF00486	Transcriptional regulatory protein, C terminal
D3A95_05165	PF18317	Shikimate 5'-dehydrogenase C-terminal domain
D3A95_05165	PF08501	Shikimate dehydrogenase substrate binding domain
D3A95_05170	PF00543	Nitrogen regulatory protein P-II
D3A95_05175	PF03725	3' exoribonuclease family, domain 2
D3A95_05175	PF01138	3' exoribonuclease family, domain 1
D3A95_05185	PF13335	Magnesium chelatase, subunit ChlI C-terminal
D3A95_05185	PF01078	Magnesium chelatase, subunit ChlI
D3A95_05195	PF04055	Radical SAM superfamily
D3A95_05195	PF06463	Molybdenum Cofactor Synthesis C
D3A95_05200	PF10150	Ribonuclease E/G family
D3A95_05205	PF04960	Glutaminase
D3A95_05215	PF02096	60Kd inner membrane protein
D3A95_05220	PF00825	Ribonuclease P
D3A95_05225	PF00468	Ribosomal protein L34
D3A95_05230	PF08299	Bacterial dnaA protein helix-turn-helix
D3A95_05230	PF00308	Bacterial dnaA  protein
D3A95_05230	PF11638	DnaA N-terminal domain
D3A95_05235	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
D3A95_05250	PF12849	PBP superfamily domain
D3A95_05260	PF00483	Nucleotidyl transferase
D3A95_05265	PF03773	Predicted permease
D3A95_05270	PF04055	Radical SAM superfamily
D3A95_05270	PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family
D3A95_05275	PF00210	Ferritin-like domain
D3A95_05285	PF07995	Glucose / Sorbosone dehydrogenase
D3A95_05295	PF04545	Sigma-70, region 4
D3A95_05295	PF04539	Sigma-70 region 3
D3A95_05295	PF04542	Sigma-70 region 2 
D3A95_05295	PF00140	Sigma-70 factor, region 1.2
D3A95_05305	PF12849	PBP superfamily domain
D3A95_05310	PF12849	PBP superfamily domain
D3A95_05315	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_05320	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_05325	PF00005	ABC transporter
D3A95_05330	PF01425	Amidase
D3A95_05340	PF10396	GTP-binding protein TrmE N-terminus
D3A95_05340	PF01926	50S ribosome-binding GTPase
D3A95_05340	PF12631	MnmE helical domain
D3A95_05360	PF00111	2Fe-2S iron-sulfur cluster binding domain
D3A95_05370	PF07963	Prokaryotic N-terminal methylation motif
D3A95_05370	PF00114	Pilin (bacterial filament)
D3A95_05380	PF12838	4Fe-4S dicluster domain
D3A95_05390	PF00535	Glycosyl transferase family 2
D3A95_05395	PF00535	Glycosyl transferase family 2
D3A95_05400	PF02069	Prokaryotic metallothionein
D3A95_05405	PF01022	Bacterial regulatory protein, arsR family
D3A95_05420	PF01627	Hpt domain
D3A95_05420	PF01584	CheW-like domain
D3A95_05420	PF00072	Response regulator receiver domain
D3A95_05420	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_05425	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
D3A95_05425	PF01590	GAF domain
D3A95_05435	PF00072	Response regulator receiver domain
D3A95_05440	PF00072	Response regulator receiver domain
D3A95_05455	PF00005	ABC transporter
D3A95_05460	PF12399	Branched-chain amino acid ATP-binding cassette transporter
D3A95_05460	PF00005	ABC transporter
D3A95_05470	PF02653	Branched-chain amino acid transport system / permease component
D3A95_05480	PF01230	HIT domain
D3A95_05485	PF04551	GcpE protein
D3A95_05500	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_05510	PF14698	Argininosuccinate lyase C-terminal
D3A95_05510	PF00206	Lyase
D3A95_05515	PF01126	Heme oxygenase
D3A95_05535	PF00793	DAHP synthetase I family
D3A95_05535	PF18152	DAHP synthase ferredoxin-like domain
D3A95_05550	PF00085	Thioredoxin
D3A95_05575	PF14251	Domain of unknown function (DUF4346)
D3A95_05585	PF08148	DSHCT (NUC185) domain
D3A95_05585	PF00271	Helicase conserved C-terminal domain
D3A95_05585	PF00270	DEAD/DEAH box helicase
D3A95_05590	PF01584	CheW-like domain
D3A95_05590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_05590	PF01584	CheW-like domain
D3A95_05590	PF02895	Signal transducing histidine kinase, homodimeric domain
D3A95_05590	PF00072	Response regulator receiver domain
D3A95_05590	PF02895	Signal transducing histidine kinase, homodimeric domain
D3A95_05590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_05590	PF01627	Hpt domain
D3A95_05590	PF00072	Response regulator receiver domain
D3A95_05590	PF01627	Hpt domain
D3A95_05595	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
D3A95_05595	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
D3A95_05605	PF00072	Response regulator receiver domain
D3A95_05610	PF00072	Response regulator receiver domain
D3A95_05620	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
D3A95_05635	PF12697	Alpha/beta hydrolase family
D3A95_05645	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
D3A95_05645	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
D3A95_05655	PF01593	Flavin containing amine oxidoreductase
D3A95_05665	PF01384	Phosphate transporter family
D3A95_05670	PF01964	Radical SAM ThiC family
D3A95_05675	PF03330	Lytic transglycolase
D3A95_05685	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
D3A95_05685	PF01243	Pyridoxamine 5'-phosphate oxidase
D3A95_05690	PF00699	Urease beta subunit
D3A95_05700	PF00005	ABC transporter
D3A95_05705	PF13439	Glycosyltransferase Family 4
D3A95_05705	PF00534	Glycosyl transferases group 1
D3A95_05715	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
D3A95_05715	PF01842	ACT domain
D3A95_05715	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
D3A95_05755	PF04107	Glutamate-cysteine ligase family 2(GCS2)
D3A95_05760	PF02684	Lipid-A-disaccharide synthetase
D3A95_05775	PF08281	Sigma-70, region 4
D3A95_05775	PF04542	Sigma-70 region 2 
D3A95_05780	PF01618	MotA/TolQ/ExbB proton channel family
D3A95_05790	PF13181	Tetratricopeptide repeat
D3A95_05790	PF00535	Glycosyl transferase family 2
D3A95_05800	PF13361	UvrD-like helicase C-terminal domain
D3A95_05800	PF00580	UvrD/REP helicase N-terminal domain
D3A95_05800	PF12705	PD-(D/E)XK nuclease superfamily
D3A95_05810	PF13419	Haloacid dehalogenase-like hydrolase
D3A95_05815	PF10431	C-terminal, D2-small domain, of ClpB protein 
D3A95_05815	PF17871	AAA lid domain
D3A95_05815	PF07724	AAA domain (Cdc48 subfamily)
D3A95_05815	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_05815	PF02861	Clp amino terminal domain, pathogenicity island component
D3A95_05830	PF03144	Elongation factor Tu domain 2
D3A95_05830	PF00009	Elongation factor Tu GTP binding domain
D3A95_05830	PF00679	Elongation factor G C-terminus
D3A95_05830	PF06421	GTP-binding protein LepA C-terminus
D3A95_05840	PF02386	Cation transport protein
D3A95_05845	PF00180	Isocitrate/isopropylmalate dehydrogenase
D3A95_05855	PF04839	Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
D3A95_05865	PF00075	RNase H
D3A95_05870	PF16320	Ribosomal protein L7/L12 dimerisation domain
D3A95_05870	PF00542	Ribosomal protein L7/L12 C-terminal domain
D3A95_05875	PF00466	Ribosomal protein L10
D3A95_05880	PF00687	Ribosomal protein L1p/L10e family
D3A95_05885	PF03946	Ribosomal protein L11, N-terminal domain
D3A95_05885	PF00298	Ribosomal protein L11, RNA binding domain
D3A95_05890	PF02357	Transcription termination factor nusG
D3A95_05890	PF00467	KOW motif
D3A95_05915	PF12323	Helix-turn-helix domain
D3A95_05915	PF07282	Putative transposase DNA-binding domain
D3A95_05915	PF01385	Probable transposase
D3A95_05930	PF00403	Heavy-metal-associated domain
D3A95_05955	PF01783	Ribosomal L32p protein family
D3A95_05960	PF00485	Phosphoribulokinase / Uridine kinase family
D3A95_05970	PF00311	Phosphoenolpyruvate carboxylase
D3A95_05975	PF01960	ArgJ family
D3A95_05980	PF00258	Flavodoxin
D3A95_05990	PF01458	Uncharacterized protein family (UPF0051)
D3A95_05995	PF00005	ABC transporter
D3A95_06005	PF00331	Glycosyl hydrolase family 10
D3A95_06005	PF12791	Anti-sigma factor N-terminus
D3A95_06010	PF00005	ABC transporter
D3A95_06020	PF02463	RecF/RecN/SMC N terminal domain
D3A95_06030	PF13393	Histidyl-tRNA synthetase
D3A95_06030	PF03129	Anticodon binding domain
D3A95_06050	PF02628	Cytochrome oxidase assembly protein
D3A95_06055	PF01040	UbiA prenyltransferase family
D3A95_06060	PF12697	Alpha/beta hydrolase family
D3A95_06065	PF00106	short chain dehydrogenase
D3A95_06075	PF00719	Inorganic pyrophosphatase
D3A95_06085	PF00005	ABC transporter
D3A95_06090	PF01751	Toprim domain
D3A95_06090	PF13368	Topoisomerase C-terminal repeat
D3A95_06090	PF01131	DNA topoisomerase
D3A95_06105	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_06105	PF17862	AAA+ lid domain
D3A95_06105	PF01434	Peptidase family M41
D3A95_06115	PF02911	Formyl transferase, C-terminal domain
D3A95_06115	PF00551	Formyl transferase
D3A95_06120	PF00773	RNB domain
D3A95_06120	PF17876	Cold shock domain
D3A95_06120	PF08206	Ribonuclease B OB domain
D3A95_06120	PF00575	S1 RNA binding domain
D3A95_06125	PF00550	Phosphopantetheine attachment site
D3A95_06130	PF02801	Beta-ketoacyl synthase, C-terminal domain
D3A95_06130	PF00109	Beta-ketoacyl synthase, N-terminal domain
D3A95_06135	PF02779	Transketolase, pyrimidine binding domain
D3A95_06135	PF02780	Transketolase, C-terminal domain
D3A95_06135	PF00456	Transketolase, thiamine diphosphate binding domain
D3A95_06150	PF06949	Protein of unknown function (DUF1292)
D3A95_06155	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
D3A95_06155	PF01276	Orn/Lys/Arg decarboxylase, major domain
D3A95_06160	PF00196	Bacterial regulatory proteins, luxR family
D3A95_06160	PF00072	Response regulator receiver domain
D3A95_06180	PF03477	ATP cone domain
D3A95_06190	PF01385	Probable transposase
D3A95_06190	PF12323	Helix-turn-helix domain
D3A95_06190	PF07282	Putative transposase DNA-binding domain
D3A95_06200	PF00563	EAL domain
D3A95_06200	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_06200	PF03707	Bacterial signalling protein N terminal repeat
D3A95_06205	PF00180	Isocitrate/isopropylmalate dehydrogenase
D3A95_06220	PF04055	Radical SAM superfamily
D3A95_06235	PF16416	ARM-like repeat domain, GUN4-N terminal
D3A95_06235	PF05419	GUN4-like 
D3A95_06240	PF01467	Cytidylyltransferase-like
D3A95_06240	PF00294	pfkB family carbohydrate kinase
D3A95_06250	PF13439	Glycosyltransferase Family 4
D3A95_06255	PF13439	Glycosyltransferase Family 4
D3A95_06255	PF00534	Glycosyl transferases group 1
D3A95_06265	PF03951	Glutamine synthetase, beta-Grasp domain
D3A95_06265	PF00120	Glutamine synthetase, catalytic domain
D3A95_06270	PF01926	50S ribosome-binding GTPase
D3A95_06270	PF06071	Protein of unknown function (DUF933)
D3A95_06275	PF01219	Prokaryotic diacylglycerol kinase
D3A95_06280	PF02130	Uncharacterized protein family UPF0054
D3A95_06290	PF01098	Cell cycle protein
D3A95_06310	PF00459	Inositol monophosphatase family
D3A95_06330	PF00753	Metallo-beta-lactamase superfamily
D3A95_06330	PF16123	Hydroxyacylglutathione hydrolase C-terminus
D3A95_06340	PF01497	Periplasmic binding protein
D3A95_06345	PF09210	Domain of unknown function (DUF1957)
D3A95_06345	PF03065	Glycosyl hydrolase family 57
D3A95_06350	PF02881	SRP54-type protein, helical bundle domain
D3A95_06350	PF00448	SRP54-type protein, GTPase domain
D3A95_06350	PF02978	Signal peptide binding domain
D3A95_06360	PF14403	Circularly permuted ATP-grasp type 2 
D3A95_06365	PF14159	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
D3A95_06365	PF00133	tRNA synthetases class I (I, L, M and V)
D3A95_06365	PF08264	Anticodon-binding domain of tRNA
D3A95_06365	PF10458	Valyl tRNA synthetase tRNA binding arm
D3A95_06370	PF00117	Glutamine amidotransferase class-I
D3A95_06370	PF00958	GMP synthase C terminal domain
D3A95_06370	PF02540	NAD synthase
D3A95_06375	PF08032	RNA 2'-O ribose methyltransferase substrate binding
D3A95_06375	PF00588	SpoU rRNA Methylase family
D3A95_06380	PF01737	YCF9
D3A95_06385	PF01551	Peptidase family M23
D3A95_06385	PF04225	Opacity-associated protein A LysM-like domain
D3A95_06390	PF00427	Phycobilisome Linker polypeptide
D3A95_06395	PF00427	Phycobilisome Linker polypeptide
D3A95_06400	PF00427	Phycobilisome Linker polypeptide
D3A95_06405	PF03130	PBS lyase HEAT-like repeat
D3A95_06410	PF03130	PBS lyase HEAT-like repeat
D3A95_06415	PF01383	CpcD/allophycocyanin linker domain
D3A95_06420	PF01383	CpcD/allophycocyanin linker domain
D3A95_06420	PF00427	Phycobilisome Linker polypeptide
D3A95_06425	PF00502	Phycobilisome protein
D3A95_06430	PF00502	Phycobilisome protein
D3A95_06435	PF03167	Uracil DNA glycosylase superfamily
D3A95_06450	PF01209	ubiE/COQ5 methyltransferase family
D3A95_06460	PF01933	Uncharacterised protein family UPF0052
D3A95_06470	PF01571	Aminomethyltransferase folate-binding domain
D3A95_06475	PF13847	Methyltransferase domain
D3A95_06480	PF02581	Thiamine monophosphate synthase
D3A95_06480	PF17792	ThiD2 family
D3A95_06490	PF01555	DNA methylase
D3A95_06500	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
D3A95_06500	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
D3A95_06515	PF02576	RimP N-terminal domain
D3A95_06520	PF13184	NusA-like KH domain
D3A95_06520	PF00575	S1 RNA binding domain
D3A95_06520	PF08529	NusA N-terminal domain
D3A95_06530	PF00202	Aminotransferase class-III
D3A95_06540	PF10502	Signal peptidase, peptidase S26 
D3A95_06555	PF00202	Aminotransferase class-III
D3A95_06575	PF02254	TrkA-N domain
D3A95_06575	PF02080	TrkA-C domain
D3A95_06590	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
D3A95_06590	PF18074	Primosomal protein N C-terminal domain
D3A95_06590	PF17764	3′ DNA-binding domain (3′BD)
D3A95_06590	PF00270	DEAD/DEAH box helicase
D3A95_06590	PF00271	Helicase conserved C-terminal domain
D3A95_06600	PF00171	Aldehyde dehydrogenase family
D3A95_06610	PF13439	Glycosyltransferase Family 4
D3A95_06610	PF00534	Glycosyl transferases group 1
D3A95_06625	PF03358	NADPH-dependent FMN reductase
D3A95_06630	PF00490	Delta-aminolevulinic acid dehydratase
D3A95_06640	PF00557	Metallopeptidase family M24
D3A95_06645	PF03441	FAD binding domain of DNA photolyase
D3A95_06645	PF00875	DNA photolyase
D3A95_06655	PF01740	STAS domain
D3A95_06660	PF00636	Ribonuclease III domain
D3A95_06665	PF12966	N-ATPase, AtpR subunit 
D3A95_06670	PF00119	ATP synthase A chain
D3A95_06675	PF00137	ATP synthase subunit C
D3A95_06685	PF00430	ATP synthase B/B' CF(0)
D3A95_06690	PF00213	ATP synthase delta (OSCP) subunit
D3A95_06695	PF02874	ATP synthase alpha/beta family, beta-barrel domain
D3A95_06695	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
D3A95_06695	PF00306	ATP synthase alpha/beta chain, C terminal domain
D3A95_06700	PF00483	Nucleotidyl transferase
D3A95_06705	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_06705	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_06705	PF00989	PAS fold
D3A95_06705	PF00672	HAMP domain
D3A95_06715	PF00290	Tryptophan synthase alpha chain
D3A95_06720	PF01098	Cell cycle protein
D3A95_06730	PF00005	ABC transporter
D3A95_06730	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
D3A95_06735	PF01716	Manganese-stabilising protein / photosystem II polypeptide
D3A95_06745	PF00069	Protein kinase domain
D3A95_06750	PF00762	Ferrochelatase
D3A95_06755	PF10664	Cyanobacterial and plastid NDH-1 subunit M
D3A95_06765	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_06765	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_06765	PF00989	PAS fold
D3A95_06765	PF16736	Single Cache-like 
D3A95_06770	PF00999	Sodium/hydrogen exchanger family
D3A95_06775	PF01134	Glucose inhibited division protein A
D3A95_06780	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
D3A95_06785	PF07109	Magnesium-protoporphyrin IX methyltransferase C-terminus
D3A95_06805	PF00005	ABC transporter
D3A95_06810	PF03808	Glycosyl transferase WecB/TagA/CpsF family
D3A95_06815	PF00124	Photosynthetic reaction centre protein
D3A95_06820	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
D3A95_06825	PF00483	Nucleotidyl transferase
D3A95_06830	PF16363	GDP-mannose 4,6 dehydratase
D3A95_06835	PF14437	MafB19-like deaminase
D3A95_06840	PF01168	Alanine racemase, N-terminal domain
D3A95_06840	PF00842	Alanine racemase, C-terminal domain
D3A95_06845	PF01177	Asp/Glu/Hydantoin racemase
D3A95_06850	PF01027	Inhibitor of apoptosis-promoting Bax1
D3A95_06855	PF01264	Chorismate synthase
D3A95_06860	PF01521	Iron-sulphur cluster biosynthesis
D3A95_06865	PF08338	Domain of unknown function (DUF1731)
D3A95_06865	PF01370	NAD dependent epimerase/dehydratase family
D3A95_06875	PF00923	Transaldolase/Fructose-6-phosphate aldolase
D3A95_06875	PF13202	EF hand
D3A95_06890	PF00578	AhpC/TSA family
D3A95_06905	PF00800	Prephenate dehydratase
D3A95_06910	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
D3A95_06910	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
D3A95_06920	PF04542	Sigma-70 region 2 
D3A95_06920	PF08281	Sigma-70, region 4
D3A95_06930	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
D3A95_06930	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
D3A95_06945	PF12399	Branched-chain amino acid ATP-binding cassette transporter
D3A95_06945	PF00005	ABC transporter
D3A95_06955	PF00588	SpoU rRNA Methylase family
D3A95_06965	PF00392	Bacterial regulatory proteins, gntR family
D3A95_06970	PF01472	PUA domain
D3A95_06970	PF00696	Amino acid kinase family
D3A95_06975	PF00459	Inositol monophosphatase family
D3A95_07000	PF01010	NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
D3A95_07000	PF00361	Proton-conducting membrane transporter
D3A95_07000	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
D3A95_07005	PF00361	Proton-conducting membrane transporter
D3A95_07015	PF00464	Serine hydroxymethyltransferase
D3A95_07020	PF00953	Glycosyl transferase family 4
D3A95_07025	PF18146	Damage-inducible protein CinA KH domain
D3A95_07025	PF02464	Competence-damaged protein
D3A95_07025	PF00994	Probable molybdopterin binding domain
D3A95_07050	PF13545	Crp-like helix-turn-helix domain
D3A95_07050	PF00027	Cyclic nucleotide-binding domain
D3A95_07100	PF01740	STAS domain
D3A95_07100	PF00916	Sulfate permease family
D3A95_07105	PF02245	Methylpurine-DNA glycosylase (MPG)
D3A95_07115	PF01556	DnaJ C terminal domain
D3A95_07115	PF00226	DnaJ domain
D3A95_07120	PF00012	Hsp70 protein
D3A95_07130	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
D3A95_07130	PF01872	RibD C-terminal domain
D3A95_07140	PF01551	Peptidase family M23
D3A95_07140	PF08525	Opacity-associated protein A N-terminal motif
D3A95_07140	PF01476	LysM domain
D3A95_07145	PF02602	Uroporphyrinogen-III synthase HemD
D3A95_07150	PF06206	CpeT/CpcT family (DUF1001)
D3A95_07155	PF01790	Prolipoprotein diacylglyceryl transferase
D3A95_07160	PF00453	Ribosomal protein L20
D3A95_07165	PF01632	Ribosomal protein L35
D3A95_07175	PF17774	Putative RNA-binding domain in YlmH
D3A95_07175	PF01479	S4 domain
D3A95_07190	PF12849	PBP superfamily domain
D3A95_07195	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_07200	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_07205	PF00005	ABC transporter
D3A95_07210	PF01522	Polysaccharide deacetylase
D3A95_07230	PF03575	Peptidase family S51
D3A95_07235	PF02875	Mur ligase family, glutamate ligase domain
D3A95_07235	PF08443	RimK-like ATP-grasp domain
D3A95_07235	PF08245	Mur ligase middle domain
D3A95_07265	PF13476	AAA domain
D3A95_07270	PF00092	von Willebrand factor type A domain
D3A95_07280	PF00106	short chain dehydrogenase
D3A95_07285	PF01565	FAD binding domain 
D3A95_07285	PF04030	D-arabinono-1,4-lactone oxidase 
D3A95_07295	PF01040	UbiA prenyltransferase family
D3A95_07305	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_07325	PF01145	SPFH domain / Band 7 family
D3A95_07330	PF02700	Phosphoribosylformylglycinamidine (FGAM) synthase
D3A95_07355	PF00877	NlpC/P60 family
D3A95_07360	PF00478	IMP dehydrogenase / GMP reductase domain
D3A95_07370	PF02092	Glycyl-tRNA synthetase beta subunit
D3A95_07375	PF03725	3' exoribonuclease family, domain 2
D3A95_07375	PF01138	3' exoribonuclease family, domain 1
D3A95_07375	PF00575	S1 RNA binding domain
D3A95_07375	PF00013	KH domain
D3A95_07375	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
D3A95_07390	PF01040	UbiA prenyltransferase family
D3A95_07395	PF17275	Family of unknown function (DUF5340)
D3A95_07400	PF00583	Acetyltransferase (GNAT) family
D3A95_07405	PF00881	Nitroreductase family
D3A95_07410	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
D3A95_07410	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
D3A95_07410	PF03129	Anticodon binding domain
D3A95_07415	PF00486	Transcriptional regulatory protein, C terminal
D3A95_07415	PF00072	Response regulator receiver domain
D3A95_07420	PF00633	Helix-hairpin-helix motif
D3A95_07420	PF13662	Toprim domain
D3A95_07420	PF02132	RecR protein
D3A95_07425	PF16658	Class II release factor RF3, C-terminal domain
D3A95_07425	PF00009	Elongation factor Tu GTP binding domain
D3A95_07430	PF16363	GDP-mannose 4,6 dehydratase
D3A95_07445	PF00762	Ferrochelatase
D3A95_07450	PF01062	Bestrophin, RFP-TM, chloride channel
D3A95_07455	PF04945	YHS domain
D3A95_07475	PF00012	Hsp70 protein
D3A95_07480	PF00762	Ferrochelatase
D3A95_07495	PF01118	Semialdehyde dehydrogenase, NAD binding domain
D3A95_07495	PF02774	Semialdehyde dehydrogenase, dimerisation domain
D3A95_07510	PF03793	PASTA domain
D3A95_07510	PF00069	Protein kinase domain
D3A95_07520	PF00132	Bacterial transferase hexapeptide (six repeats)
D3A95_07520	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
D3A95_07525	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
D3A95_07535	PF11967	Recombination protein O N terminal
D3A95_07535	PF02565	Recombination protein O C terminal
D3A95_07545	PF07228	Stage II sporulation protein E (SpoIIE)
D3A95_07545	PF08673	Phosphoserine phosphatase RsbU, N-terminal domain
D3A95_07555	PF05190	MutS family domain IV
D3A95_07555	PF00488	MutS domain V
D3A95_07555	PF05188	MutS domain II
D3A95_07555	PF05192	MutS domain III
D3A95_07555	PF01624	MutS domain I
D3A95_07565	PF03109	ABC1 family
D3A95_07580	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
D3A95_07590	PF00595	PDZ domain
D3A95_07590	PF03572	Peptidase family S41
D3A95_07640	PF00815	Histidinol dehydrogenase
D3A95_07655	PF17864	RuvB AAA lid domain
D3A95_07655	PF05491	RuvB C-terminal winged helix domain
D3A95_07655	PF05496	Holliday junction DNA helicase RuvB P-loop domain
D3A95_07660	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
D3A95_07660	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
D3A95_07665	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
D3A95_07675	PF01192	RNA polymerase Rpb6 
D3A95_07685	PF18693	TRAM domain
D3A95_07685	PF04055	Radical SAM superfamily
D3A95_07685	PF00919	Uncharacterized protein family UPF0004
D3A95_07690	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
D3A95_07695	PF10417	C-terminal domain of 1-Cys peroxiredoxin
D3A95_07695	PF00578	AhpC/TSA family
D3A95_07705	PF01594	AI-2E family transporter
D3A95_07725	PF00557	Metallopeptidase family M24
D3A95_07725	PF05195	Aminopeptidase P, N-terminal domain
D3A95_07730	PF00155	Aminotransferase class I and II
D3A95_07735	PF00216	Bacterial DNA-binding protein
D3A95_07740	PF00162	Phosphoglycerate kinase
D3A95_07745	PF00582	Universal stress protein family
D3A95_07765	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
D3A95_07770	PF01241	Photosystem I psaG / psaK
D3A95_07780	PF00391	PEP-utilising enzyme, mobile domain
D3A95_07780	PF00224	Pyruvate kinase, barrel domain
D3A95_07780	PF02887	Pyruvate kinase, alpha/beta domain
D3A95_07785	PF07683	Cobalamin synthesis protein cobW C-terminal domain
D3A95_07785	PF02492	CobW/HypB/UreG, nucleotide-binding domain
D3A95_07805	PF00211	Adenylate and Guanylate cyclase catalytic domain
D3A95_07825	PF00158	Sigma-54 interaction domain
D3A95_07825	PF02954	Bacterial regulatory protein, Fis family
D3A95_07825	PF01590	GAF domain
D3A95_07860	PF03109	ABC1 family
D3A95_07865	PF00085	Thioredoxin
D3A95_07870	PF04286	Protein of unknown function (DUF445)
D3A95_07880	PF01494	FAD binding domain
D3A95_07890	PF05684	Protein of unknown function (DUF819)
D3A95_07905	PF01678	Diaminopimelate epimerase
D3A95_07915	PF01969	Protein of unknown function DUF111
D3A95_07945	PF00111	2Fe-2S iron-sulfur cluster binding domain
D3A95_07955	PF00069	Protein kinase domain
D3A95_07955	PF03793	PASTA domain
D3A95_07960	PF04434	SWIM zinc finger
D3A95_07985	PF05996	Ferredoxin-dependent bilin reductase
D3A95_07990	PF13249	Squalene-hopene cyclase N-terminal domain
D3A95_07990	PF13243	Squalene-hopene cyclase C-terminal domain
D3A95_07995	PF01435	Peptidase family M48
D3A95_07995	PF13181	Tetratricopeptide repeat
D3A95_08000	PF00571	CBS domain
D3A95_08000	PF00291	Pyridoxal-phosphate dependent enzyme
D3A95_08010	PF01555	DNA methylase
D3A95_08015	PF00156	Phosphoribosyl transferase domain
D3A95_08025	PF12344	Ultra-violet resistance protein B
D3A95_08025	PF00271	Helicase conserved C-terminal domain
D3A95_08025	PF04851	Type III restriction enzyme, res subunit
D3A95_08025	PF17757	UvrB interaction domain
D3A95_08025	PF02151	UvrB/uvrC motif
D3A95_08030	PF00502	Phycobilisome protein
D3A95_08035	PF02542	YgbB family
D3A95_08045	PF03466	LysR substrate binding domain
D3A95_08045	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
D3A95_08060	PF02350	UDP-N-acetylglucosamine 2-epimerase
D3A95_08065	PF02577	Bifunctional nuclease
D3A95_08075	PF01411	tRNA synthetases class II (A)
D3A95_08075	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
D3A95_08075	PF02272	DHHA1 domain
D3A95_08080	PF00155	Aminotransferase class I and II
D3A95_08105	PF00486	Transcriptional regulatory protein, C terminal
D3A95_08105	PF00072	Response regulator receiver domain
D3A95_08110	PF13603	Leucyl-tRNA synthetase, Domain 2
D3A95_08110	PF08264	Anticodon-binding domain of tRNA
D3A95_08110	PF00133	tRNA synthetases class I (I, L, M and V)
D3A95_08120	PF13614	AAA domain
D3A95_08125	PF02397	Bacterial sugar transferase
D3A95_08135	PF13439	Glycosyltransferase Family 4
D3A95_08140	PF13439	Glycosyltransferase Family 4
D3A95_08140	PF00534	Glycosyl transferases group 1
D3A95_08150	PF00535	Glycosyl transferase family 2
D3A95_08170	PF00037	4Fe-4S binding domain
D3A95_08190	PF00583	Acetyltransferase (GNAT) family
D3A95_08195	PF00154	recA bacterial DNA recombination protein
D3A95_08205	PF00085	Thioredoxin
D3A95_08235	PF07726	ATPase family associated with various cellular activities (AAA)
D3A95_08235	PF17863	AAA lid domain
D3A95_08245	PF00343	Carbohydrate phosphorylase
D3A95_08255	PF06055	Exopolysaccharide synthesis, ExoD
D3A95_08265	PF01063	Amino-transferase class IV
D3A95_08275	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
D3A95_08280	PF00575	S1 RNA binding domain
D3A95_08285	PF01741	Large-conductance mechanosensitive channel, MscL
D3A95_08295	PF01025	GrpE
D3A95_08315	PF00012	Hsp70 protein
D3A95_08320	PF02705	K+ potassium transporter
D3A95_08325	PF00155	Aminotransferase class I and II
D3A95_08330	PF00465	Iron-containing alcohol dehydrogenase 
D3A95_08335	PF05151	Photosystem II reaction centre M protein (PsbM)
D3A95_08340	PF01266	FAD dependent oxidoreductase
D3A95_08340	PF05690	Thiazole biosynthesis protein ThiG
D3A95_08350	PF02223	Thymidylate kinase
D3A95_08355	PF07733	Bacterial DNA polymerase III alpha NTPase domain
D3A95_08355	PF01336	OB-fold nucleic acid binding domain
D3A95_08355	PF02811	PHP domain
D3A95_08355	PF14579	Helix-hairpin-helix motif
D3A95_08355	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
D3A95_08365	PF05670	NFACT protein RNA binding domain
D3A95_08375	PF00471	Ribosomal protein L33
D3A95_08380	PF01084	Ribosomal protein S18
D3A95_08385	PF01297	Zinc-uptake complex component A periplasmic
D3A95_08385	PF09223	ZinT (YodA) periplasmic lipocalin-like zinc-recruitment
D3A95_08390	PF00005	ABC transporter
D3A95_08410	PF00561	alpha/beta hydrolase fold
D3A95_08420	PF00266	Aminotransferase class-V
D3A95_08425	PF14579	Helix-hairpin-helix motif
D3A95_08425	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
D3A95_08425	PF01336	OB-fold nucleic acid binding domain
D3A95_08425	PF02811	PHP domain
D3A95_08425	PF07733	Bacterial DNA polymerase III alpha NTPase domain
D3A95_08450	PF01795	MraW methylase family
D3A95_08460	PF00905	Penicillin binding protein transpeptidase domain
D3A95_08460	PF03793	PASTA domain
D3A95_08460	PF03717	Penicillin-binding Protein dimerisation domain
D3A95_08480	PF12965	Domain of unknown function (DUF3854)
D3A95_08500	PF01609	Transposase DDE domain
D3A95_08505	PF01478	Type IV leader peptidase family
D3A95_08505	PF06750	Bacterial Peptidase A24 N-terminal domain
D3A95_08515	PF00202	Aminotransferase class-III
D3A95_08525	PF07688	KaiA C-terminal domain
D3A95_08530	PF07689	KaiB domain
D3A95_08535	PF06745	KaiC
D3A95_08540	PF01513	ATP-NAD kinase
D3A95_08555	PF00111	2Fe-2S iron-sulfur cluster binding domain
D3A95_08570	PF01458	Uncharacterized protein family (UPF0051)
D3A95_08580	PF12697	Alpha/beta hydrolase family
D3A95_08585	PF03912	Psb28 protein
D3A95_08590	PF01220	Dehydroquinase class II
D3A95_08605	PF13545	Crp-like helix-turn-helix domain
D3A95_08605	PF00027	Cyclic nucleotide-binding domain
D3A95_08615	PF04545	Sigma-70, region 4
D3A95_08615	PF04542	Sigma-70 region 2 
D3A95_08615	PF04539	Sigma-70 region 3
D3A95_08615	PF00140	Sigma-70 factor, region 1.2
D3A95_08620	PF08544	GHMP kinases C terminal 
D3A95_08620	PF00288	GHMP kinases N terminal domain
D3A95_08625	PF00950	ABC 3 transport family
D3A95_08630	PF00814	Glycoprotease family
D3A95_08635	PF02082	Transcriptional regulator
D3A95_08640	PF00291	Pyridoxal-phosphate dependent enzyme
D3A95_08660	PF00749	tRNA synthetases class I (E and Q), catalytic domain
D3A95_08670	PF05697	Bacterial trigger factor protein (TF)
D3A95_08670	PF05698	Bacterial trigger factor protein (TF) C-terminus
D3A95_08675	PF00574	Clp protease
D3A95_08680	PF06689	ClpX C4-type zinc finger
D3A95_08680	PF07724	AAA domain (Cdc48 subfamily)
D3A95_08680	PF10431	C-terminal, D2-small domain, of ClpB protein 
D3A95_08685	PF00106	short chain dehydrogenase
D3A95_08700	PF01209	ubiE/COQ5 methyltransferase family
D3A95_08705	PF00582	Universal stress protein family
D3A95_08720	PF00834	Ribulose-phosphate 3 epimerase family
D3A95_08725	PF05690	Thiazole biosynthesis protein ThiG
D3A95_08725	PF01266	FAD dependent oxidoreductase
D3A95_08735	PF00586	AIR synthase related protein, N-terminal domain
D3A95_08735	PF02769	AIR synthase related protein, C-terminal domain
D3A95_08740	PF00427	Phycobilisome Linker polypeptide
D3A95_08740	PF00502	Phycobilisome protein
D3A95_08745	PF00486	Transcriptional regulatory protein, C terminal
D3A95_08745	PF00072	Response regulator receiver domain
D3A95_08770	PF14492	Elongation Factor G, domain II
D3A95_08770	PF00009	Elongation factor Tu GTP binding domain
D3A95_08770	PF00679	Elongation factor G C-terminus
D3A95_08770	PF03764	Elongation factor G, domain IV
D3A95_08775	PF00535	Glycosyl transferase family 2
D3A95_08785	PF00155	Aminotransferase class I and II
D3A95_08795	PF00480	ROK family
D3A95_08800	PF03816	Cell envelope-related transcriptional attenuator domain
D3A95_08805	PF01018	GTP1/OBG
D3A95_08805	PF01926	50S ribosome-binding GTPase
D3A95_08815	PF00989	PAS fold
D3A95_08815	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_08815	PF16736	Single Cache-like 
D3A95_08815	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_08820	PF03023	Lipid II flippase MurJ
D3A95_08825	PF00712	DNA polymerase III beta subunit, N-terminal domain
D3A95_08825	PF02767	DNA polymerase III beta subunit, central domain
D3A95_08825	PF02768	DNA polymerase III beta subunit, C-terminal domain
D3A95_08835	PF00142	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
D3A95_08840	PF17265	Family of unknown function (DUF5331)
D3A95_08845	PF00148	Nitrogenase component 1 type Oxidoreductase
D3A95_08850	PF03958	Bacterial type II/III secretion system short domain
D3A95_08850	PF00263	Bacterial type II and III secretion system protein
D3A95_08870	PF17969	L,D-transpeptidase C-terminal domain
D3A95_08870	PF03734	L,D-transpeptidase catalytic domain
D3A95_08880	PF00871	Acetokinase family
D3A95_08890	PF00156	Phosphoribosyl transferase domain
D3A95_08895	PF00860	Permease family
D3A95_08920	PF02675	S-adenosylmethionine decarboxylase 
D3A95_08925	PF17284	Spermidine synthase tetramerisation domain
D3A95_08935	PF02142	MGS-like domain
D3A95_08935	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
D3A95_08935	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
D3A95_08940	PF04025	Domain of unknown function (DUF370)
D3A95_08945	PF01627	Hpt domain
D3A95_08945	PF00486	Transcriptional regulatory protein, C terminal
D3A95_08945	PF00072	Response regulator receiver domain
D3A95_08970	PF08264	Anticodon-binding domain of tRNA
D3A95_08970	PF00133	tRNA synthetases class I (I, L, M and V)
D3A95_08970	PF06827	Zinc finger found in FPG and IleRS
D3A95_08975	PF03652	Holliday junction resolvase
D3A95_08995	PF00266	Aminotransferase class-V
D3A95_09005	PF00551	Formyl transferase
D3A95_09010	PF03572	Peptidase family S41
D3A95_09010	PF00595	PDZ domain
D3A95_09015	PF04966	Carbohydrate-selective porin, OprB family
D3A95_09015	PF00395	S-layer homology domain
D3A95_09020	PF12452	Protein of unknown function (DUF3685) 
D3A95_09020	PF00072	Response regulator receiver domain
D3A95_09025	PF05685	Putative restriction endonuclease
D3A95_09035	PF16363	GDP-mannose 4,6 dehydratase
D3A95_09040	PF00581	Rhodanese-like domain
D3A95_09050	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
D3A95_09065	PF00132	Bacterial transferase hexapeptide (six repeats)
D3A95_09065	PF12804	MobA-like NTP transferase domain
D3A95_09075	PF08486	Stage II sporulation protein
D3A95_09085	PF01765	Ribosome recycling factor
D3A95_09090	PF00696	Amino acid kinase family
D3A95_09100	PF00486	Transcriptional regulatory protein, C terminal
D3A95_09100	PF00072	Response regulator receiver domain
D3A95_09110	PF02417	Chromate transporter
D3A95_09120	PF13614	AAA domain
D3A95_09125	PF10431	C-terminal, D2-small domain, of ClpB protein 
D3A95_09125	PF02861	Clp amino terminal domain, pathogenicity island component
D3A95_09125	PF17871	AAA lid domain
D3A95_09125	PF07724	AAA domain (Cdc48 subfamily)
D3A95_09125	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_09140	PF07885	Ion channel
D3A95_09150	PF00378	Enoyl-CoA hydratase/isomerase
D3A95_09170	PF00580	UvrD/REP helicase N-terminal domain
D3A95_09170	PF13361	UvrD-like helicase C-terminal domain
D3A95_09190	PF00830	Ribosomal L28 family
D3A95_09195	PF01427	D-ala-D-ala dipeptidase
D3A95_09200	PF13326	Photosystem II Pbs27
D3A95_09205	PF08719	Domain of unknown function (DUF1768)
D3A95_09210	PF01119	DNA mismatch repair protein, C-terminal domain
D3A95_09210	PF08676	MutL C terminal dimerisation domain
D3A95_09215	PF02441	Flavoprotein
D3A95_09215	PF04127	DNA / pantothenate metabolism flavoprotein
D3A95_09220	PF10742	Protein of unknown function (DUF2555)
D3A95_09230	PF00563	EAL domain
D3A95_09230	PF08448	PAS fold
D3A95_09230	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_09230	PF08447	PAS fold
D3A95_09250	PF00488	MutS domain V
D3A95_09250	PF01713	Smr domain
D3A95_09255	PF00152	tRNA synthetases class II (D, K and N) 
D3A95_09255	PF01336	OB-fold nucleic acid binding domain
D3A95_09260	PF00999	Sodium/hydrogen exchanger family
D3A95_09260	PF00582	Universal stress protein family
D3A95_09265	PF00291	Pyridoxal-phosphate dependent enzyme
D3A95_09285	PF05193	Peptidase M16 inactive domain
D3A95_09285	PF00675	Insulinase (Peptidase family M16)
D3A95_09295	PF00579	tRNA synthetases class I (W and Y)
D3A95_09295	PF01479	S4 domain
D3A95_09300	PF00905	Penicillin binding protein transpeptidase domain
D3A95_09300	PF00912	Transglycosylase
D3A95_09305	PF01475	Ferric uptake regulator family
D3A95_09315	PF17676	LD-carboxypeptidase C-terminal domain
D3A95_09315	PF02016	LD-carboxypeptidase N-terminal domain
D3A95_09320	PF01385	Probable transposase
D3A95_09320	PF07282	Putative transposase DNA-binding domain
D3A95_09320	PF12323	Helix-turn-helix domain
D3A95_09335	PF00361	Proton-conducting membrane transporter
D3A95_09340	PF01206	Sulfurtransferase TusA
D3A95_09340	PF00581	Rhodanese-like domain
D3A95_09345	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
D3A95_09345	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
D3A95_09350	PF01553	Acyltransferase
D3A95_09350	PF13193	AMP-binding enzyme C-terminal domain
D3A95_09350	PF00501	AMP-binding enzyme
D3A95_09355	PF00698	Acyl transferase domain
D3A95_09360	PF00886	Ribosomal protein S16
D3A95_09370	PF01165	Ribosomal protein S21
D3A95_09375	PF02562	PhoH-like protein
D3A95_09380	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
D3A95_09380	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
D3A95_09390	PF04485	Phycobilisome degradation protein nblA 
D3A95_09395	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD  
D3A95_09395	PF00132	Bacterial transferase hexapeptide (six repeats)
D3A95_09405	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_09405	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_09405	PF07689	KaiB domain
D3A95_09425	PF01475	Ferric uptake regulator family
D3A95_09435	PF04304	Protein of unknown function (DUF454)
D3A95_09445	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
D3A95_09445	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
D3A95_09450	PF00348	Polyprenyl synthetase
D3A95_09455	PF02681	Divergent PAP2 family
D3A95_09460	PF00483	Nucleotidyl transferase
D3A95_09460	PF01050	Mannose-6-phosphate isomerase
D3A95_09465	PF11910	Cyanobacterial and plant NDH-1 subunit O
D3A95_09470	PF03092	BT1 family
D3A95_09475	PF03055	Retinal pigment epithelial membrane protein
D3A95_09480	PF01928	CYTH domain
D3A95_09485	PF01546	Peptidase family M20/M25/M40
D3A95_09485	PF07687	Peptidase dimerisation domain
D3A95_09500	PF00005	ABC transporter
D3A95_09515	PF03552	Cellulose synthase
D3A95_09515	PF00535	Glycosyl transferase family 2
D3A95_09515	PF07238	PilZ domain
D3A95_09530	PF00449	Urease alpha-subunit, N-terminal domain
D3A95_09530	PF01979	Amidohydrolase family
D3A95_09540	PF13180	PDZ domain
D3A95_09550	PF08240	Alcohol dehydrogenase GroES-like domain
D3A95_09550	PF00107	Zinc-binding dehydrogenase
D3A95_09555	PF00005	ABC transporter
D3A95_09560	PF00625	Guanylate kinase
D3A95_09565	PF02472	Biopolymer transport protein ExbD/TolR
D3A95_09570	PF07650	KH domain
D3A95_09570	PF01926	50S ribosome-binding GTPase
D3A95_09575	PF02492	CobW/HypB/UreG, nucleotide-binding domain
D3A95_09580	PF13180	PDZ domain
D3A95_09590	PF00149	Calcineurin-like phosphoesterase
D3A95_09600	PF00814	Glycoprotease family
D3A95_09610	PF07238	PilZ domain
D3A95_09610	PF00535	Glycosyl transferase family 2
D3A95_09610	PF03552	Cellulose synthase
D3A95_09615	PF05690	Thiazole biosynthesis protein ThiG
D3A95_09625	PF00885	6,7-dimethyl-8-ribityllumazine synthase
D3A95_09650	PF01118	Semialdehyde dehydrogenase, NAD binding domain
D3A95_09650	PF02774	Semialdehyde dehydrogenase, dimerisation domain
D3A95_09655	PF00271	Helicase conserved C-terminal domain
D3A95_09655	PF00176	SNF2 family N-terminal domain
D3A95_09695	PF01594	AI-2E family transporter
D3A95_09700	PF02875	Mur ligase family, glutamate ligase domain
D3A95_09700	PF08245	Mur ligase middle domain
D3A95_09715	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_09715	PF17862	AAA+ lid domain
D3A95_09715	PF01434	Peptidase family M41
D3A95_09740	PF01702	Queuine tRNA-ribosyltransferase
D3A95_09745	PF00297	Ribosomal protein L3
D3A95_09750	PF00573	Ribosomal protein L4/L1 family
D3A95_09755	PF00276	Ribosomal protein L23
D3A95_09760	PF03947	Ribosomal Proteins L2, C-terminal domain
D3A95_09760	PF00181	Ribosomal Proteins L2, RNA binding domain
D3A95_09765	PF00203	Ribosomal protein S19
D3A95_09770	PF00237	Ribosomal protein L22p/L17e
D3A95_09775	PF00189	Ribosomal protein S3, C-terminal domain
D3A95_09775	PF07650	KH domain
D3A95_09780	PF00252	Ribosomal protein L16p/L10e
D3A95_09785	PF00831	Ribosomal L29 protein
D3A95_09790	PF00366	Ribosomal protein S17
D3A95_09795	PF00238	Ribosomal protein L14p/L23e
D3A95_09800	PF00467	KOW motif
D3A95_09800	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
D3A95_09805	PF00281	Ribosomal protein L5
D3A95_09805	PF00673	ribosomal L5P family C-terminus
D3A95_09810	PF00410	Ribosomal protein S8
D3A95_09815	PF00347	Ribosomal protein L6
D3A95_09820	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
D3A95_09825	PF03719	Ribosomal protein S5, C-terminal domain
D3A95_09825	PF00333	Ribosomal protein S5, N-terminal domain
D3A95_09830	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
D3A95_09835	PF00344	SecY translocase
D3A95_09845	PF01176	Translation initiation factor 1A / IF-1
D3A95_09850	PF00444	Ribosomal protein L36
D3A95_09855	PF00416	Ribosomal protein S13/S18
D3A95_09860	PF00411	Ribosomal protein S11
D3A95_09865	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
D3A95_09865	PF01000	RNA polymerase Rpb3/RpoA insert domain
D3A95_09865	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
D3A95_09870	PF01196	Ribosomal protein L17
D3A95_09875	PF01416	tRNA pseudouridine synthase
D3A95_09880	PF00572	Ribosomal protein L13
D3A95_09885	PF00380	Ribosomal protein S9/S16
D3A95_09890	PF01197	Ribosomal protein L31
D3A95_09895	PF04371	Porphyromonas-type peptidyl-arginine deiminase
D3A95_09915	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain
D3A95_09925	PF00266	Aminotransferase class-V
D3A95_09940	PF00226	DnaJ domain
D3A95_09940	PF01556	DnaJ C terminal domain
D3A95_09950	PF00437	Type II/IV secretion system protein
D3A95_09955	PF00437	Type II/IV secretion system protein
D3A95_09955	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
D3A95_09985	PF00694	Aconitase C-terminal domain
D3A95_09990	PF00962	Adenosine/AMP deaminase
D3A95_10015	PF01930	Domain of unknown function DUF83
D3A95_10015	PF01867	CRISPR associated protein Cas1
D3A95_10020	PF09827	CRISPR associated protein Cas2
D3A95_10030	PF18019	HD domain
D3A95_10040	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
D3A95_10065	PF06969	HemN C-terminal domain
D3A95_10070	PF01126	Heme oxygenase
D3A95_10075	PF02915	Rubrerythrin
D3A95_10080	PF11378	Protein of unknown function (DUF3181)
D3A95_10085	PF00350	Dynamin family
D3A95_10100	PF02531	PsaD
D3A95_10105	PF05728	Uncharacterised protein family (UPF0227)
D3A95_10110	PF08241	Methyltransferase domain
D3A95_10115	PF00925	GTP cyclohydrolase II
D3A95_10115	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
D3A95_10135	PF06508	Queuosine biosynthesis protein QueC
D3A95_10140	PF00012	Hsp70 protein
D3A95_10155	PF12794	Mechanosensitive ion channel inner membrane domain 1
D3A95_10155	PF12795	Mechanosensitive ion channel porin domain
D3A95_10155	PF00924	Mechanosensitive ion channel
D3A95_10160	PF02021	Uncharacterised protein family UPF0102
D3A95_10165	PF01488	Shikimate / quinate 5-dehydrogenase
D3A95_10165	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
D3A95_10165	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
D3A95_10175	PF00155	Aminotransferase class I and II
D3A95_10180	PF01385	Probable transposase
D3A95_10180	PF07282	Putative transposase DNA-binding domain
D3A95_10180	PF12323	Helix-turn-helix domain
D3A95_10190	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
D3A95_10200	PF00883	Cytosol aminopeptidase family, catalytic domain
D3A95_10200	PF02789	Cytosol aminopeptidase family, N-terminal domain
D3A95_10205	PF04452	RNA methyltransferase
D3A95_10210	PF00164	Ribosomal protein S12/S23
D3A95_10215	PF00177	Ribosomal protein S7p/S5e
D3A95_10220	PF03144	Elongation factor Tu domain 2
D3A95_10220	PF00009	Elongation factor Tu GTP binding domain
D3A95_10220	PF03764	Elongation factor G, domain IV
D3A95_10220	PF00679	Elongation factor G C-terminus
D3A95_10220	PF14492	Elongation Factor G, domain II
D3A95_10225	PF00009	Elongation factor Tu GTP binding domain
D3A95_10225	PF03143	Elongation factor Tu C-terminal domain
D3A95_10225	PF03144	Elongation factor Tu domain 2
D3A95_10230	PF00338	Ribosomal protein S10p/S20e
D3A95_10240	PF02151	UvrB/uvrC motif
D3A95_10240	PF12826	Helix-hairpin-helix motif
D3A95_10240	PF08459	UvrC Helix-hairpin-helix N-terminal
D3A95_10240	PF01541	GIY-YIG catalytic domain
D3A95_10260	PF02694	Uncharacterised BCR, YnfA/UPF0060 family
D3A95_10265	PF13085	2Fe-2S iron-sulfur cluster binding domain
D3A95_10270	PF00762	Ferrochelatase
D3A95_10275	PF00005	ABC transporter
D3A95_10275	PF17912	MalK OB fold domain
D3A95_10275	PF03459	TOBE domain
D3A95_10280	PF00348	Polyprenyl synthetase
D3A95_10285	PF03816	Cell envelope-related transcriptional attenuator domain
D3A95_10290	PF00574	Clp protease
D3A95_10300	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
D3A95_10300	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
D3A95_10305	PF02457	DisA bacterial checkpoint controller nucleotide-binding
D3A95_10310	PF01255	Putative undecaprenyl diphosphate synthase
D3A95_10320	PF00288	GHMP kinases N terminal domain
D3A95_10320	PF08544	GHMP kinases C terminal 
D3A95_10330	PF13614	AAA domain
D3A95_10340	PF00005	ABC transporter
D3A95_10350	PF02219	Methylenetetrahydrofolate reductase
D3A95_10355	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
D3A95_10355	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
D3A95_10355	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
D3A95_10355	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
D3A95_10360	PF01467	Cytidylyltransferase-like
D3A95_10360	PF00294	pfkB family carbohydrate kinase
D3A95_10365	PF08239	Bacterial SH3 domain
D3A95_10365	PF01520	N-acetylmuramoyl-L-alanine amidase
D3A95_10380	PF03600	Citrate transporter
D3A95_10410	PF01699	Sodium/calcium exchanger protein
D3A95_10415	PF11283	Protein of unknown function (DUF3084)
D3A95_10425	PF01975	Survival protein SurE
D3A95_10445	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
D3A95_10450	PF07977	FabA-like domain
D3A95_10455	PF00132	Bacterial transferase hexapeptide (six repeats)
D3A95_10455	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
D3A95_10460	PF00588	SpoU rRNA Methylase family
D3A95_10475	PF07238	PilZ domain
D3A95_10475	PF00535	Glycosyl transferase family 2
D3A95_10480	PF07238	PilZ domain
D3A95_10480	PF00535	Glycosyl transferase family 2
D3A95_10490	PF01725	Ham1 family
D3A95_10500	PF05685	Putative restriction endonuclease
D3A95_10505	PF09383	NIL domain
D3A95_10505	PF00005	ABC transporter
D3A95_10510	PF09587	Bacterial capsule synthesis protein PGA_cap
D3A95_10515	PF00571	CBS domain
D3A95_10515	PF01743	Poly A polymerase head domain
D3A95_10525	PF01343	Peptidase family S49
D3A95_10540	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
D3A95_10540	PF17944	Arginine decarboxylase C-terminal helical extension
D3A95_10540	PF17810	Arginine decarboxylase helical bundle domain
D3A95_10545	PF00289	Biotin carboxylase, N-terminal domain
D3A95_10545	PF02785	Biotin carboxylase C-terminal domain
D3A95_10545	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
D3A95_10550	PF03033	Glycosyltransferase family 28 N-terminal domain
D3A95_10550	PF04101	Glycosyltransferase family 28 C-terminal domain
D3A95_10555	PF01451	Low molecular weight phosphotyrosine protein phosphatase
D3A95_10560	PF00586	AIR synthase related protein, N-terminal domain
D3A95_10560	PF02769	AIR synthase related protein, C-terminal domain
D3A95_10575	PF01435	Peptidase family M48
D3A95_10575	PF13181	Tetratricopeptide repeat
D3A95_10580	PF02696	Uncharacterized ACR, YdiU/UPF0061 family
D3A95_10590	PF00421	Photosystem II protein
D3A95_10595	PF00124	Photosynthetic reaction centre protein
D3A95_10600	PF02033	Ribosome-binding factor A
D3A95_10605	PF01925	Sulfite exporter TauE/SafE
D3A95_10610	PF11127	Protein of unknown function (DUF2892)
D3A95_10610	PF00581	Rhodanese-like domain
D3A95_10615	PF00753	Metallo-beta-lactamase superfamily
D3A95_10620	PF02913	FAD linked oxidases, C-terminal domain
D3A95_10620	PF01565	FAD binding domain 
D3A95_10625	PF02492	CobW/HypB/UreG, nucleotide-binding domain
D3A95_10625	PF07683	Cobalamin synthesis protein cobW C-terminal domain
D3A95_10645	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
D3A95_10645	PF01266	FAD dependent oxidoreductase
D3A95_10655	PF05198	Translation initiation factor IF-3, N-terminal domain
D3A95_10655	PF00707	Translation initiation factor IF-3, C-terminal domain
D3A95_10660	PF00529	HlyD membrane-fusion protein of T1SS
D3A95_10660	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
D3A95_10665	PF00873	AcrB/AcrD/AcrF family
D3A95_10670	PF03989	DNA gyrase C-terminal domain, beta-propeller
D3A95_10670	PF00521	DNA gyrase/topoisomerase IV, subunit A
D3A95_10675	PF01171	PP-loop family
D3A95_10675	PF09179	TilS substrate binding domain
D3A95_10680	PF01578	Cytochrome C assembly protein
D3A95_10690	PF12419	SNF2 Helicase protein 
D3A95_10690	PF00271	Helicase conserved C-terminal domain
D3A95_10690	PF00176	SNF2 family N-terminal domain
D3A95_10695	PF08448	PAS fold
D3A95_10695	PF00563	EAL domain
D3A95_10695	PF00990	Diguanylate cyclase, GGDEF domain
D3A95_10695	PF08447	PAS fold
D3A95_10700	PF01746	tRNA (Guanine-1)-methyltransferase
D3A95_10715	PF13411	MerR HTH family regulatory protein
D3A95_10730	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
D3A95_10730	PF07992	Pyridine nucleotide-disulphide oxidoreductase
D3A95_10735	PF03572	Peptidase family S41
D3A95_10735	PF00595	PDZ domain
D3A95_10740	PF01509	TruB family pseudouridylate synthase (N terminal domain)
D3A95_10750	PF08241	Methyltransferase domain
D3A95_10755	PF02347	Glycine cleavage system P-protein
D3A95_10760	PF01654	Cytochrome bd terminal oxidase subunit I
D3A95_10765	PF02322	Cytochrome bd terminal oxidase subunit II
D3A95_10780	PF12849	PBP superfamily domain
D3A95_10800	PF07517	SecA DEAD-like domain
D3A95_10800	PF01043	SecA preprotein cross-linking domain
D3A95_10800	PF07516	SecA Wing and Scaffold domain
D3A95_10810	PF04225	Opacity-associated protein A LysM-like domain
D3A95_10810	PF01551	Peptidase family M23
D3A95_10815	PF07685	CobB/CobQ-like glutamine amidotransferase domain
D3A95_10815	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
D3A95_10825	PF04432	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
D3A95_10825	PF04422	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
D3A95_10830	PF00124	Photosynthetic reaction centre protein
D3A95_10840	PF12323	Helix-turn-helix domain
D3A95_10840	PF01385	Probable transposase
D3A95_10840	PF07282	Putative transposase DNA-binding domain
D3A95_10845	PF00124	Photosynthetic reaction centre protein
D3A95_10850	PF17886	HSP20-like domain found in ArsA
D3A95_10850	PF02374	Anion-transporting ATPase
D3A95_10855	PF00005	ABC transporter
D3A95_10865	PF02843	Phosphoribosylglycinamide synthetase, C domain
D3A95_10865	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
D3A95_10865	PF02844	Phosphoribosylglycinamide synthetase, N domain
D3A95_10885	PF05175	Methyltransferase small domain
D3A95_10895	PF00892	EamA-like transporter family
D3A95_10900	PF00696	Amino acid kinase family
D3A95_10900	PF01842	ACT domain
D3A95_10900	PF13840	ACT domain 
D3A95_10905	PF06480	FtsH Extracellular
D3A95_10905	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_10905	PF17862	AAA+ lid domain
D3A95_10905	PF01434	Peptidase family M41
D3A95_10910	PF00989	PAS fold
D3A95_10910	PF00672	HAMP domain
D3A95_10910	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_10910	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_10920	PF10397	Adenylosuccinate lyase C-terminus
D3A95_10920	PF00206	Lyase
D3A95_10930	PF09190	DALR domain
D3A95_10930	PF01406	tRNA synthetases class I (C) catalytic domain
D3A95_10935	PF00253	Ribosomal protein S14p/S29e
D3A95_10940	PF01329	Pterin 4 alpha carbinolamine dehydratase
D3A95_10945	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
D3A95_10945	PF00205	Thiamine pyrophosphate enzyme, central domain
D3A95_10945	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
D3A95_10950	PF08669	Glycine cleavage T-protein C-terminal barrel domain
D3A95_10950	PF07992	Pyridine nucleotide-disulphide oxidoreductase
D3A95_10950	PF17806	Sarcosine oxidase A3 domain
D3A95_10950	PF01571	Aminomethyltransferase folate-binding domain
D3A95_10955	PF10502	Signal peptidase, peptidase S26 
D3A95_10960	PF03881	Fructosamine kinase
D3A95_10970	PF00361	Proton-conducting membrane transporter
D3A95_10980	PF00361	Proton-conducting membrane transporter
D3A95_11010	PF00117	Glutamine amidotransferase class-I
D3A95_11020	PF00206	Lyase
D3A95_11020	PF10415	Fumarase C C-terminus
D3A95_11030	PF00300	Histidine phosphatase superfamily (branch 1)
D3A95_11035	PF01405	Photosystem II reaction centre T protein
D3A95_11040	PF00421	Photosystem II protein
D3A95_11060	PF00582	Universal stress protein family
D3A95_11065	PF13176	Tetratricopeptide repeat
D3A95_11065	PF00515	Tetratricopeptide repeat
D3A95_11070	PF02686	Glu-tRNAGln amidotransferase C subunit
D3A95_11090	PF00809	Pterin binding enzyme
D3A95_11100	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
D3A95_11100	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
D3A95_11100	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
D3A95_11100	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
D3A95_11105	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
D3A95_11105	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
D3A95_11115	PF02941	Ferredoxin thioredoxin reductase variable alpha chain
D3A95_11125	PF04055	Radical SAM superfamily
D3A95_11130	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
D3A95_11135	PF05175	Methyltransferase small domain
D3A95_11145	PF17863	AAA lid domain
D3A95_11145	PF01078	Magnesium chelatase, subunit ChlI
D3A95_11165	PF01926	50S ribosome-binding GTPase
D3A95_11170	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
D3A95_11170	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
D3A95_11180	PF00101	Ribulose bisphosphate carboxylase, small chain
D3A95_11185	PF00133	tRNA synthetases class I (I, L, M and V)
D3A95_11185	PF10458	Valyl tRNA synthetase tRNA binding arm
D3A95_11185	PF08264	Anticodon-binding domain of tRNA
D3A95_11200	PF10674	Protein of unknown function (DUF2488)
D3A95_11205	PF00400	WD domain, G-beta repeat
D3A95_11215	PF01259	SAICAR synthetase
D3A95_11220	PF02685	Glucokinase
D3A95_11235	PF12857	TOBE-like domain
D3A95_11235	PF00005	ABC transporter
D3A95_11240	PF17092	Penicillin-binding protein OB-like domain
D3A95_11240	PF00912	Transglycosylase
D3A95_11240	PF00905	Penicillin binding protein transpeptidase domain
D3A95_11245	PF00436	Single-strand binding protein family
D3A95_11255	PF00111	2Fe-2S iron-sulfur cluster binding domain
D3A95_11265	PF02463	RecF/RecN/SMC N terminal domain
D3A95_11265	PF13476	AAA domain
D3A95_11275	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
D3A95_11275	PF16582	Middle domain of thiamine pyrophosphate
D3A95_11275	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
D3A95_11285	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_11285	PF01434	Peptidase family M41
D3A95_11285	PF17862	AAA+ lid domain
D3A95_11285	PF06480	FtsH Extracellular
D3A95_11290	PF00684	DnaJ central domain
D3A95_11290	PF01556	DnaJ C terminal domain
D3A95_11290	PF00226	DnaJ domain
D3A95_11295	PF00475	Imidazoleglycerol-phosphate dehydratase
D3A95_11310	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
D3A95_11320	PF07690	Major Facilitator Superfamily
D3A95_11325	PF03209	PUCC protein
D3A95_11335	PF07884	Vitamin K epoxide reductase family
D3A95_11345	PF01300	Telomere recombination
D3A95_11350	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
D3A95_11355	PF00654	Voltage gated chloride channel
D3A95_11365	PF01594	AI-2E family transporter
D3A95_11370	PF00163	Ribosomal protein S4/S9 N-terminal domain
D3A95_11370	PF01479	S4 domain
D3A95_11375	PF03462	PCRF domain
D3A95_11375	PF00472	RF-1 domain
D3A95_11385	PF01494	FAD binding domain
D3A95_11390	PF01676	Metalloenzyme superfamily
D3A95_11390	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
D3A95_11395	PF00664	ABC transporter transmembrane region
D3A95_11395	PF00005	ABC transporter
D3A95_11405	PF00582	Universal stress protein family
D3A95_11410	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
D3A95_11410	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
D3A95_11415	PF12769	4TM region of pyridine nucleotide transhydrogenase, mitoch
D3A95_11420	PF02233	NAD(P) transhydrogenase beta subunit
D3A95_11425	PF13419	Haloacid dehalogenase-like hydrolase
D3A95_11430	PF00218	Indole-3-glycerol phosphate synthase
D3A95_11435	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
D3A95_11445	PF01112	Asparaginase
D3A95_11450	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
D3A95_11455	PF10716	NADH dehydrogenase transmembrane subunit
D3A95_11465	PF02446	4-alpha-glucanotransferase
D3A95_11475	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
D3A95_11480	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
D3A95_11480	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
D3A95_11485	PF00764	Arginosuccinate synthase
D3A95_11500	PF13735	tRNA nucleotidyltransferase domain 2 putative
D3A95_11500	PF01743	Poly A polymerase head domain
D3A95_11500	PF12627	Probable RNA and SrmB- binding site of polymerase A
D3A95_11510	PF00342	Phosphoglucose isomerase
D3A95_11515	PF12146	Serine aminopeptidase, S33
D3A95_11520	PF00361	Proton-conducting membrane transporter
D3A95_11525	PF01010	NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
D3A95_11525	PF00361	Proton-conducting membrane transporter
D3A95_11525	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
D3A95_11535	PF02575	YbaB/EbfC DNA-binding family
D3A95_11540	PF00072	Response regulator receiver domain
D3A95_11540	PF00196	Bacterial regulatory proteins, luxR family
D3A95_11570	PF01042	Endoribonuclease L-PSP
D3A95_11575	PF00223	Photosystem I psaA/psaB protein
D3A95_11580	PF00223	Photosystem I psaA/psaB protein
D3A95_11585	PF05552	Conserved TM helix
D3A95_11615	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_11615	PF17862	AAA+ lid domain
D3A95_11615	PF06480	FtsH Extracellular
D3A95_11615	PF01434	Peptidase family M41
D3A95_11620	PF00271	Helicase conserved C-terminal domain
D3A95_11620	PF17191	RecG wedge domain
D3A95_11620	PF00270	DEAD/DEAH box helicase
D3A95_11630	PF02673	Bacitracin resistance protein BacA
D3A95_11635	PF04542	Sigma-70 region 2 
D3A95_11635	PF04539	Sigma-70 region 3
D3A95_11635	PF04545	Sigma-70, region 4
D3A95_11655	PF01208	Uroporphyrinogen decarboxylase (URO-D)
D3A95_11675	PF08669	Glycine cleavage T-protein C-terminal barrel domain
D3A95_11675	PF01571	Aminomethyltransferase folate-binding domain
D3A95_11695	PF01699	Sodium/calcium exchanger protein
D3A95_11705	PF09278	MerR, DNA binding
D3A95_11705	PF00376	MerR family regulatory protein
D3A95_11710	PF03040	CemA family
D3A95_11720	PF08264	Anticodon-binding domain of tRNA
D3A95_11720	PF09334	tRNA synthetases class I (M)
D3A95_11750	PF01556	DnaJ C terminal domain
D3A95_11750	PF00226	DnaJ domain
D3A95_11755	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_11760	PF00117	Glutamine amidotransferase class-I
D3A95_11760	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
D3A95_11765	PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
D3A95_11765	PF01628	HrcA protein C terminal domain
D3A95_11775	PF00534	Glycosyl transferases group 1
D3A95_11775	PF08323	Starch synthase catalytic domain
D3A95_11780	PF00171	Aldehyde dehydrogenase family
D3A95_11785	PF00391	PEP-utilising enzyme, mobile domain
D3A95_11785	PF02896	PEP-utilising enzyme, TIM barrel domain
D3A95_11785	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
D3A95_11795	PF01888	CbiD
D3A95_11810	PF00578	AhpC/TSA family
D3A95_11825	PF13181	Tetratricopeptide repeat
D3A95_11825	PF05420	Cellulose synthase operon protein C C-terminus (BCSC_C)
D3A95_11830	PF00578	AhpC/TSA family
D3A95_11835	PF03699	Uncharacterised protein family (UPF0182)
D3A95_11850	PF00005	ABC transporter
D3A95_11870	PF02086	D12 class N6 adenine-specific DNA methyltransferase
D3A95_11875	PF02325	YGGT family
D3A95_11900	PF00005	ABC transporter
D3A95_11910	PF00793	DAHP synthetase I family
D3A95_11915	PF01740	STAS domain
D3A95_11920	PF02427	Photosystem I reaction centre subunit IV / PsaE
D3A95_11925	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
D3A95_11925	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
D3A95_11925	PF06827	Zinc finger found in FPG and IleRS
D3A95_11930	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_11930	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_11935	PF04055	Radical SAM superfamily
D3A95_11935	PF00919	Uncharacterized protein family UPF0004
D3A95_11935	PF18693	TRAM domain
D3A95_11950	PF01593	Flavin containing amine oxidoreductase
D3A95_11960	PF00156	Phosphoribosyl transferase domain
D3A95_11965	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
D3A95_11965	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
D3A95_11970	PF00970	Oxidoreductase FAD-binding domain
D3A95_11970	PF00175	Oxidoreductase NAD-binding domain 
D3A95_11970	PF00111	2Fe-2S iron-sulfur cluster binding domain
D3A95_11975	PF03600	Citrate transporter
D3A95_11980	PF01687	Riboflavin kinase
D3A95_11980	PF06574	FAD synthetase
D3A95_11985	PF17863	AAA lid domain
D3A95_11985	PF07726	ATPase family associated with various cellular activities (AAA)
D3A95_12000	PF08245	Mur ligase middle domain
D3A95_12000	PF02875	Mur ligase family, glutamate ligase domain
D3A95_12000	PF01225	Mur ligase family, catalytic domain
D3A95_12005	PF02403	Seryl-tRNA synthetase N-terminal domain
D3A95_12005	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
D3A95_12010	PF00502	Phycobilisome protein
D3A95_12030	PF01808	AICARFT/IMPCHase bienzyme
D3A95_12030	PF02142	MGS-like domain
D3A95_12035	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
D3A95_12035	PF14572	Phosphoribosyl synthetase-associated domain
D3A95_12040	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_12045	PF01788	PsbJ
D3A95_12050	PF02419	PsbL protein
D3A95_12055	PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
D3A95_12060	PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
D3A95_12060	PF00284	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
D3A95_12065	PF00069	Protein kinase domain
D3A95_12065	PF00805	Pentapeptide repeats (8 copies)
D3A95_12070	PF01040	UbiA prenyltransferase family
D3A95_12075	PF01479	S4 domain
D3A95_12075	PF00849	RNA pseudouridylate synthase
D3A95_12085	PF00498	FHA domain
D3A95_12090	PF02653	Branched-chain amino acid transport system / permease component
D3A95_12090	PF11862	Domain of unknown function (DUF3382)
D3A95_12095	PF12399	Branched-chain amino acid ATP-binding cassette transporter
D3A95_12095	PF00005	ABC transporter
D3A95_12100	PF01807	CHC2 zinc finger
D3A95_12100	PF08275	DNA primase catalytic core, N-terminal domain
D3A95_12100	PF10410	DnaB-helicase binding domain of primase
D3A95_12105	PF00365	Phosphofructokinase
D3A95_12110	PF01938	TRAM domain
D3A95_12110	PF00919	Uncharacterized protein family UPF0004
D3A95_12110	PF04055	Radical SAM superfamily
D3A95_12115	PF01025	GrpE
D3A95_12120	PF11266	Long-chain fatty aldehyde decarbonylase 
D3A95_12125	PF01488	Shikimate / quinate 5-dehydrogenase
D3A95_12130	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
D3A95_12135	PF00106	short chain dehydrogenase
D3A95_12140	PF01227	GTP cyclohydrolase I
D3A95_12150	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
D3A95_12150	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
D3A95_12165	PF02163	Peptidase family M50
D3A95_12165	PF00571	CBS domain
D3A95_12190	PF01245	Ribosomal protein L19
D3A95_12195	PF02545	Maf-like protein
D3A95_12200	PF00501	AMP-binding enzyme
D3A95_12210	PF00364	Biotin-requiring enzyme
D3A95_12210	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
D3A95_12210	PF02817	e3 binding domain
D3A95_12215	PF00005	ABC transporter
D3A95_12225	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
D3A95_12225	PF00205	Thiamine pyrophosphate enzyme, central domain
D3A95_12225	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
D3A95_12230	PF00364	Biotin-requiring enzyme
D3A95_12235	PF08207	Elongation factor P (EF-P) KOW-like domain
D3A95_12235	PF01132	Elongation factor P (EF-P) OB domain
D3A95_12235	PF09285	Elongation factor P, C-terminal
D3A95_12240	PF01106	NifU-like domain
D3A95_12250	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
D3A95_12255	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
D3A95_12255	PF01926	50S ribosome-binding GTPase
D3A95_12270	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
D3A95_12275	PF00483	Nucleotidyl transferase
D3A95_12285	PF14495	Cytochrome c-550 domain
D3A95_12290	PF14495	Cytochrome c-550 domain
D3A95_12295	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
D3A95_12305	PF01048	Phosphorylase superfamily
D3A95_12315	PF01250	Ribosomal protein S6
D3A95_12320	PF01557	Fumarylacetoacetate (FAA) hydrolase family
D3A95_12325	PF01507	Phosphoadenosine phosphosulfate reductase family
D3A95_12330	PF02091	Glycyl-tRNA synthetase alpha subunit
D3A95_12335	PF01522	Polysaccharide deacetylase
D3A95_12335	PF18627	Peptidoglycan GlcNAc deacetylase N-terminal domain
D3A95_12345	PF02441	Flavoprotein
D3A95_12355	PF13460	NAD(P)H-binding 
D3A95_12365	PF02965	Vitamin B12 dependent methionine synthase, activation domain
D3A95_12365	PF00809	Pterin binding enzyme
D3A95_12365	PF02574	Homocysteine S-methyltransferase
D3A95_12365	PF02607	B12 binding domain
D3A95_12365	PF02310	B12 binding domain
D3A95_12385	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
D3A95_12395	PF13181	Tetratricopeptide repeat
D3A95_12395	PF00535	Glycosyl transferase family 2
D3A95_12400	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_12400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_12405	PF04055	Radical SAM superfamily
D3A95_12415	PF00486	Transcriptional regulatory protein, C terminal
D3A95_12415	PF00072	Response regulator receiver domain
D3A95_12425	PF00149	Calcineurin-like phosphoesterase
D3A95_12430	PF01252	Signal peptidase (SPase) II
D3A95_12435	PF01883	Iron-sulfur cluster assembly protein
D3A95_12435	PF10609	NUBPL iron-transfer P-loop NTPase
D3A95_12440	PF02540	NAD synthase
D3A95_12440	PF00117	Glutamine amidotransferase class-I
D3A95_12440	PF00958	GMP synthase C terminal domain
D3A95_12450	PF06150	ChaB
D3A95_12455	PF03796	DnaB-like helicase C terminal domain
D3A95_12455	PF14528	LAGLIDADG-like domain
D3A95_12455	PF00772	DnaB-like helicase N terminal domain
D3A95_12455	PF03796	DnaB-like helicase C terminal domain
D3A95_12455	PF00772	DnaB-like helicase N terminal domain
D3A95_12455	PF14528	LAGLIDADG-like domain
D3A95_12460	PF01281	Ribosomal protein L9, N-terminal domain
D3A95_12460	PF03948	Ribosomal protein L9, C-terminal domain
D3A95_12465	PF01701	Photosystem I reaction centre subunit IX / PsaJ
D3A95_12470	PF02507	Photosystem I reaction centre subunit III
D3A95_12475	PF00211	Adenylate and Guanylate cyclase catalytic domain
D3A95_12480	PF06514	Photosystem II 12 kDa extrinsic protein (PsbU)
D3A95_12485	PF00890	FAD binding domain
D3A95_12485	PF02910	Fumarate reductase flavoprotein C-term
D3A95_12510	PF00796	Photosystem I reaction centre subunit VIII
D3A95_12515	PF02605	Photosystem I reaction centre subunit XI
D3A95_12520	PF00899	ThiF family
D3A95_12520	PF00581	Rhodanese-like domain
D3A95_12555	PF03702	Anhydro-N-acetylmuramic acid kinase
D3A95_12560	PF03853	YjeF-related protein N-terminus
D3A95_12560	PF01256	Carbohydrate kinase
D3A95_12565	PF02934	GatB/GatE catalytic domain
D3A95_12565	PF02637	GatB domain
D3A95_12570	PF00285	Citrate synthase, C-terminal domain
D3A95_12575	PF00148	Nitrogenase component 1 type Oxidoreductase
D3A95_12575	PF08369	Proto-chlorophyllide reductase 57 kD subunit
D3A95_12585	PF05221	S-adenosyl-L-homocysteine hydrolase
D3A95_12585	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
D3A95_12590	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
D3A95_12590	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
D3A95_12600	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_12605	PF00005	ABC transporter
D3A95_12610	PF00005	ABC transporter
D3A95_12615	PF01568	Molydopterin dinucleotide binding domain
D3A95_12615	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
D3A95_12615	PF00384	Molybdopterin oxidoreductase
D3A95_12630	PF02885	Glycosyl transferase family, helical bundle domain
D3A95_12630	PF00591	Glycosyl transferase family, a/b domain
D3A95_12635	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
D3A95_12635	PF03466	LysR substrate binding domain
D3A95_12640	PF02560	Cyanate lyase C-terminal domain
D3A95_12645	PF02391	MoaE protein
D3A95_12655	PF12804	MobA-like NTP transferase domain
D3A95_12655	PF01967	MoaC family
D3A95_12660	PF06463	Molybdenum Cofactor Synthesis C
D3A95_12660	PF04055	Radical SAM superfamily
D3A95_12665	PF00994	Probable molybdopterin binding domain
D3A95_12665	PF03453	MoeA N-terminal region (domain I and II)
D3A95_12665	PF03454	MoeA C-terminal region (domain IV)
D3A95_12670	PF01730	UreF
D3A95_12675	PF02814	UreE urease accessory protein, N-terminal domain
D3A95_12675	PF05194	UreE urease accessory protein, C-terminal domain
D3A95_12680	PF09308	LuxQ, periplasmic
D3A95_12680	PF00512	His Kinase A (phospho-acceptor) domain
D3A95_12680	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
D3A95_12680	PF00072	Response regulator receiver domain
D3A95_12685	PF01645	Conserved region in glutamate synthase
D3A95_12685	PF04898	Glutamate synthase central domain
D3A95_12685	PF00310	Glutamine amidotransferases class-II
D3A95_12685	PF01493	GXGXG motif
D3A95_12695	PF09194	Restriction endonuclease BsobI
D3A95_12710	PF02384	N-6 DNA Methylase
D3A95_12715	PF00521	DNA gyrase/topoisomerase IV, subunit A
D3A95_12715	PF03989	DNA gyrase C-terminal domain, beta-propeller
D3A95_12720	PF01370	NAD dependent epimerase/dehydratase family
D3A95_12735	PF00258	Flavodoxin
D3A95_12735	PF01613	Flavin reductase like domain
D3A95_12745	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system
D3A95_12750	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
D3A95_12770	PF00528	Binding-protein-dependent transport system inner membrane component
D3A95_12775	PF02687	FtsX-like permease family
D3A95_12775	PF00005	ABC transporter
D3A95_12775	PF12704	MacB-like periplasmic core domain
D3A95_12780	PF01195	Peptidyl-tRNA hydrolase
D3A95_12785	PF02416	mttA/Hcf106 family
D3A95_12790	PF00737	Photosystem II 10 kDa phosphoprotein
D3A95_12795	PF02468	Photosystem II reaction centre N protein (psbN)
D3A95_12800	PF02392	Ycf4
D3A95_12805	PF17871	AAA lid domain
D3A95_12805	PF00004	ATPase family associated with various cellular activities (AAA)
D3A95_12805	PF07724	AAA domain (Cdc48 subfamily)
D3A95_12805	PF02861	Clp amino terminal domain, pathogenicity island component
D3A95_12805	PF10431	C-terminal, D2-small domain, of ClpB protein 
D3A95_12825	PF00072	Response regulator receiver domain
D3A95_12825	PF00486	Transcriptional regulatory protein, C terminal
D3A95_12840	PF02633	Creatinine amidohydrolase
D3A95_12845	PF12697	Alpha/beta hydrolase family
D3A95_12855	PF13439	Glycosyltransferase Family 4
D3A95_12855	PF00534	Glycosyl transferases group 1
D3A95_12865	PF00534	Glycosyl transferases group 1
D3A95_12885	PF13537	Glutamine amidotransferase domain
D3A95_12885	PF00733	Asparagine synthase
D3A95_12900	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
D3A95_12900	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
D3A95_12900	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
D3A95_12905	PF01370	NAD dependent epimerase/dehydratase family
D3A95_12910	PF13614	AAA domain
D3A95_12920	PF00682	HMGL-like
D3A95_12920	PF08502	LeuA allosteric (dimerisation) domain
D3A95_12925	PF01903	CbiX
D3A95_12945	PF13230	Glutamine amidotransferases class-II
D3A95_12955	PF01070	FMN-dependent dehydrogenase
D3A95_12960	PF01494	FAD binding domain
D3A95_12965	PF16916	Dimerisation domain of Zinc Transporter
D3A95_12965	PF01545	Cation efflux family
D3A95_12970	PF03572	Peptidase family S41
D3A95_12970	PF00595	PDZ domain
D3A95_12980	PF00696	Amino acid kinase family
D3A95_12995	PF00188	Cysteine-rich secretory protein family
D3A95_13000	PF00118	TCP-1/cpn60 chaperonin family
D3A95_13005	PF17863	AAA lid domain
D3A95_13005	PF01078	Magnesium chelatase, subunit ChlI
D3A95_13005	PF13519	von Willebrand factor type A domain
D3A95_13015	PF08041	PetM family of cytochrome b6f complex subunit 7
D3A95_13025	PF01891	Cobalt uptake substrate-specific transmembrane region
D3A95_13050	PF01738	Dienelactone hydrolase family
D3A95_13065	PF02915	Rubrerythrin
D3A95_13075	PF00294	pfkB family carbohydrate kinase
D3A95_13080	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
D3A95_13085	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
D3A95_13090	PF18337	RapA N-terminal Tudor like domain
D3A95_13090	PF00176	SNF2 family N-terminal domain
D3A95_13090	PF18339	RapA N-terminal Tudor like domain 1
D3A95_13090	PF12137	RNA polymerase recycling family C-terminal
D3A95_13090	PF00271	Helicase conserved C-terminal domain
D3A95_13100	PF05239	PRC-barrel domain
D3A95_13100	PF01782	RimM N-terminal domain
D3A95_13115	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
D3A95_13120	PF01476	LysM domain
D3A95_13120	PF03734	L,D-transpeptidase catalytic domain
D3A95_13135	PF01145	SPFH domain / Band 7 family
D3A95_13135	PF15975	Flotillin
D3A95_13145	PF03170	Bacterial cellulose synthase subunit
D3A95_13145	PF03552	Cellulose synthase
D3A95_13145	PF07238	PilZ domain
D3A95_13145	PF00535	Glycosyl transferase family 2
D3A95_13160	PF01926	50S ribosome-binding GTPase
D3A95_13180	PF00462	Glutaredoxin
D3A95_13185	PF01722	BolA-like protein
D3A95_13205	PF00501	AMP-binding enzyme
D3A95_13205	PF13193	AMP-binding enzyme C-terminal domain
D3A95_13205	PF00550	Phosphopantetheine attachment site
D3A95_13205	PF00551	Formyl transferase
D3A95_13205	PF00668	Condensation domain
D3A95_13240	PF05378	Hydantoinase/oxoprolinase N-terminal region
D3A95_13240	PF01968	Hydantoinase/oxoprolinase
D3A95_13305	PF00482	Type II secretion system (T2SS), protein F
D3A95_13315	PF02254	TrkA-N domain
D3A95_13315	PF07885	Ion channel
D3A95_13345	PF00005	ABC transporter
D3A95_13345	PF01061	ABC-2 type transporter
D3A95_13345	PF00498	FHA domain
D3A95_13350	PF03190	Protein of unknown function, DUF255
D3A95_13355	PF02152	Dihydroneopterin aldolase
D3A95_13395	PF02887	Pyruvate kinase, alpha/beta domain
D3A95_13395	PF00224	Pyruvate kinase, barrel domain
D3A95_13400	PF02910	Fumarate reductase flavoprotein C-term
D3A95_13400	PF00890	FAD binding domain
D3A95_13405	PF02254	TrkA-N domain
D3A95_13405	PF02080	TrkA-C domain
D3A95_13405	PF00999	Sodium/hydrogen exchanger family
