locus-tag class description PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF00364 Biotin-requiring enzyme PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF00550 Phosphopantetheine attachment site PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF00502 Phycobilisome protein PF00502 Phycobilisome protein PF01383 CpcD/allophycocyanin linker domain PF00502 Phycobilisome protein PF00427 Phycobilisome Linker polypeptide PF00502 Phycobilisome protein PF00502 Phycobilisome protein PF00696 Amino acid kinase family PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00202 Aminotransferase class-III PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF00764 Arginosuccinate synthase PF14698 Argininosuccinate lyase C-terminal PF00206 Lyase PF01960 ArgJ family PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF01761 3-dehydroquinate synthase PF01264 Chorismate synthase PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF08501 Shikimate dehydrogenase substrate binding domain PF01202 Shikimate kinase PF01220 Dehydroquinase class II PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF00155 Aminotransferase class I and II PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF12966 N-ATPase, AtpR subunit PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF00306 ATP synthase alpha/beta chain, C terminal domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00231 ATP synthase PF00213 ATP synthase delta (OSCP) subunit PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF00430 ATP synthase B/B' CF(0) PF00430 ATP synthase B/B' CF(0) PF00137 ATP synthase subunit C PF00119 ATP synthase A chain PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF00155 Aminotransferase class I and II PF03437 BtpA family PF18152 DAHP synthase ferredoxin-like domain PF00793 DAHP synthetase I family PF00936 BMC domain PF00936 BMC domain PF00936 BMC domain PF00936 BMC domain PF03319 Ethanolamine utilisation protein EutN/carboxysome PF00132 Bacterial transferase hexapeptide (six repeats) PF00101 Ribulose bisphosphate carboxylase, small chain PF05140 ResB-like family PF01578 Cytochrome C assembly protein PF00148 Nitrogenase component 1 type Oxidoreductase PF08369 Proto-chlorophyllide reductase 57 kD subunit PF17863 AAA lid domain PF01078 Magnesium chelatase, subunit ChlI PF13519 von Willebrand factor type A domain PF01040 UbiA prenyltransferase family PF02514 CobN/Magnesium Chelatase PF11965 Domain of unknown function (DUF3479) PF17863 AAA lid domain PF01078 Magnesium chelatase, subunit ChlI PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus PF00148 Nitrogenase component 1 type Oxidoreductase PF01494 FAD binding domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF00574 Clp protease PF00574 Clp protease PF00574 Clp protease PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00005 ABC transporter PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF03186 CobD/Cbib protein PF02570 Precorrin-8X methylmutase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF05175 Methyltransferase small domain PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF02514 CobN/Magnesium Chelatase PF12557 Cob(I)alamin adenosyltransferase N terminal PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF00502 Phycobilisome protein PF00502 Phycobilisome protein PF01383 CpcD/allophycocyanin linker domain PF00427 Phycobilisome Linker polypeptide PF01383 CpcD/allophycocyanin linker domain PF03130 PBS lyase HEAT-like repeat PF03130 PBS lyase HEAT-like repeat PF00427 Phycobilisome Linker polypeptide PF00427 Phycobilisome Linker polypeptide PF00427 Phycobilisome Linker polypeptide PF00731 AIR carboxylase PF00348 Polyprenyl synthetase PF01593 Flavin containing amine oxidoreductase PF01040 UbiA prenyltransferase family PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00510 Cytochrome c oxidase subunit III PF00595 PDZ domain PF03572 Peptidase family S41 PF00595 PDZ domain PF03572 Peptidase family S41 PF01654 Cytochrome bd terminal oxidase subunit I PF02322 Cytochrome bd terminal oxidase subunit II PF00005 ABC transporter PF03459 TOBE domain PF00132 Bacterial transferase hexapeptide (six repeats) PF06426 Serine acetyltransferase, N-terminal PF01507 Phosphoadenosine phosphosulfate reductase family PF00291 Pyridoxal-phosphate dependent enzyme PF00571 CBS domain PF00291 Pyridoxal-phosphate dependent enzyme PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF00701 Dihydrodipicolinate synthetase family PF05173 Dihydrodipicolinate reductase, C-terminus PF01113 Dihydrodipicolinate reductase, N-terminus PF01678 Diaminopimelate epimerase PF00308 Bacterial dnaA protein PF08299 Bacterial dnaA protein helix-turn-helix PF11638 DnaA N-terminal domain PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF14528 LAGLIDADG-like domain PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF14528 LAGLIDADG-like domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF10410 DnaB-helicase binding domain of primase PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00012 Hsp70 protein PF00012 Hsp70 protein PF00012 Hsp70 protein PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF09115 DNA polymerase III, delta subunit, C terminal PF00210 Ferritin-like domain PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF00698 Acyl transferase domain PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF01116 Fructose-bisphosphate aldolase class-II PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF07664 Ferrous iron transport protein B C terminus PF02421 Ferrous iron transport protein B PF07670 Nucleoside recognition PF07664 Ferrous iron transport protein B C terminus PF02421 Ferrous iron transport protein B PF07670 Nucleoside recognition PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF01227 GTP cyclohydrolase I PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF00809 Pterin binding enzyme PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF06827 Zinc finger found in FPG and IleRS PF02943 Ferredoxin thioredoxin reductase catalytic beta chain PF02941 Ferredoxin thioredoxin reductase variable alpha chain PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF01098 Cell cycle protein PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF01475 Ferric uptake regulator family PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF02527 rRNA small subunit methyltransferase G PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF01565 FAD binding domain PF00465 Iron-containing alcohol dehydrogenase PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF00128 Alpha amylase, catalytic domain PF02806 Alpha amylase, C-terminal all-beta domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF01380 SIS domain PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF00543 Nitrogen regulatory protein P-II PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF00749 tRNA synthetases class I (E and Q), catalytic domain PF02091 Glycyl-tRNA synthetase alpha subunit PF02092 Glycyl-tRNA synthetase beta subunit PF00118 TCP-1/cpn60 chaperonin family PF00118 TCP-1/cpn60 chaperonin family PF00166 Chaperonin 10 Kd subunit PF01025 GrpE PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF02540 NAD synthase PF00464 Serine hydroxymethyltransferase PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF00490 Delta-aminolevulinic acid dehydratase PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF02602 Uroporphyrinogen-III synthase HemD PF01208 Uroporphyrinogen decarboxylase (URO-D) PF01218 Coproporphyrinogen III oxidase PF05175 Methyltransferase small domain PF00762 Ferrochelatase PF00202 Aminotransferase class-III PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF00977 Histidine biosynthesis protein PF00475 Imidazoleglycerol-phosphate dehydratase PF00815 Histidinol dehydrogenase PF00977 Histidine biosynthesis protein PF01634 ATP phosphoribosyltransferase PF00117 Glutamine amidotransferase class-I PF01502 Phosphoribosyl-AMP cyclohydrolase PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF01126 Heme oxygenase PF01126 Heme oxygenase PF01430 Hsp33 protein PF00011 Hsp20/alpha crystallin family PF00183 Hsp90 protein PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF06827 Zinc finger found in FPG and IleRS PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF00920 Dehydratase family PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF10369 Small subunit of acetolactate synthase PF01176 Translation initiation factor 1A / IF-1 PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF04760 Translation initiation factor IF-2, N-terminal region PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF00421 Photosystem II protein PF07688 KaiA C-terminal domain PF07689 KaiB domain PF06745 KaiC PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF00330 Aconitase family (aconitate hydratase) PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF12826 Helix-hairpin-helix motif PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF01040 UbiA prenyltransferase family PF00378 Enoyl-CoA hydratase/isomerase PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF16582 Middle domain of thiamine pyrophosphate PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF08264 Anticodon-binding domain of tRNA PF09334 tRNA synthetases class I (M) PF03775 Septum formation inhibitor MinC, C-terminal domain PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF03776 Septum formation topological specificity factor MinE PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF01967 MoaC family PF12804 MobA-like NTP transferase domain PF02391 MoaE protein PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF00581 Rhodanese-like domain PF00899 ThiF family PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF01119 DNA mismatch repair protein, C-terminal domain PF08676 MutL C terminal dimerisation domain PF00488 MutS domain V PF01713 Smr domain PF02445 Quinolinate synthetase A protein PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF04485 Phycobilisome degradation protein nblA PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00146 NADH dehydrogenase PF00361 Proton-conducting membrane transporter PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF00361 Proton-conducting membrane transporter PF00361 Proton-conducting membrane transporter PF00361 Proton-conducting membrane transporter PF00361 Proton-conducting membrane transporter PF00361 Proton-conducting membrane transporter PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF12838 4Fe-4S dicluster domain PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF10716 NADH dehydrogenase transmembrane subunit PF00266 Aminotransferase class-V PF00266 Aminotransferase class-V PF00266 Aminotransferase class-V PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00005 ABC transporter PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00467 KOW motif PF02357 Transcription termination factor nusG PF10128 Glucose-6-phosphate dehydrogenase subunit PF01471 Putative peptidoglycan binding domain PF02548 Ketopantoate hydroxymethyltransferase PF02224 Cytidylate kinase PF02569 Pantoate-beta-alanine ligase PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF01593 Flavin containing amine oxidoreductase PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF01243 Pyridoxamine 5'-phosphate oxidase PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF01333 Apocytochrome F, C-terminal PF16639 Apocytochrome F, N-terminal PF00033 Cytochrome b/b6/petB PF00355 Rieske [2Fe-2S] domain PF00032 Cytochrome b(C-terminal)/b6/petD PF00111 2Fe-2S iron-sulfur cluster binding domain PF02529 Cytochrome B6-F complex subunit 5 PF01383 CpcD/allophycocyanin linker domain PF00970 Oxidoreductase FAD-binding domain PF00175 Oxidoreductase NAD-binding domain PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF03742 PetN PF00162 Phosphoglycerate kinase PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF01409 tRNA synthetases class II core domain (F) PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF02504 Fatty acid synthesis protein PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF02233 NAD(P) transhydrogenase beta subunit PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF01612 3'-5' exonuclease PF00106 short chain dehydrogenase PF00719 Inorganic pyrophosphatase PF00311 Phosphoenolpyruvate carboxylase PF02503 Polyphosphate kinase middle domain PF13090 Polyphosphate kinase C-terminal domain 2 PF17941 Polyphosphate kinase C-terminal domain 1 PF13089 Polyphosphate kinase N-terminal domain PF02541 Ppx/GppA phosphatase family PF03462 PCRF domain PF00472 RF-1 domain PF03462 PCRF domain PF00472 RF-1 domain PF00485 Phosphoribulokinase / Uridine kinase family PF00171 Aldehyde dehydrogenase family PF00696 Amino acid kinase family PF01472 PUA domain PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF00223 Photosystem I psaA/psaB protein PF00223 Photosystem I psaA/psaB protein PF12838 4Fe-4S dicluster domain PF02531 PsaD PF02427 Photosystem I reaction centre subunit IV / PsaE PF02507 Photosystem I reaction centre subunit III PF00796 Photosystem I reaction centre subunit VIII PF01701 Photosystem I reaction centre subunit IX / PsaJ PF01241 Photosystem I psaG / psaK PF02605 Photosystem I reaction centre subunit XI PF07465 Photosystem I protein M (PsaM) PF00124 Photosynthetic reaction centre protein PF00124 Photosynthetic reaction centre protein PF00124 Photosynthetic reaction centre protein PF00421 Photosystem II protein PF00421 Photosystem II protein PF00124 Photosynthetic reaction centre protein PF00124 Photosynthetic reaction centre protein PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits PF00737 Photosystem II 10 kDa phosphoprotein PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) PF01788 PsbJ PF02533 Photosystem II 4 kDa reaction centre component PF02419 PsbL protein PF05151 Photosystem II reaction centre M protein (PsbM) PF02468 Photosystem II reaction centre N protein (psbN) PF01716 Manganese-stabilising protein / photosystem II polypeptide PF01405 Photosystem II reaction centre T protein PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) PF14495 Cytochrome c-550 domain PF03912 Psb28 protein PF06596 Photosystem II reaction centre X protein (PsbX) PF06298 Photosystem II protein Y (PsbY) PF13326 Photosystem II Pbs27 PF01195 Peptidyl-tRNA hydrolase PF00709 Adenylosuccinate synthetase PF10397 Adenylosuccinate lyase C-terminus PF00206 Lyase PF01259 SAICAR synthetase PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF00731 AIR carboxylase PF13537 Glutamine amidotransferase domain PF00156 Phosphoribosyl transferase domain PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00551 Formyl transferase PF01842 ACT domain PF00551 Formyl transferase PF00171 Aldehyde dehydrogenase family PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF01180 Dihydroorotate dehydrogenase PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF00696 Amino acid kinase family PF06745 KaiC PF18073 Rubredoxin metal binding domain PF00633 Helix-hairpin-helix motif PF04002 RadC-like JAB domain PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain PF00101 Ribulose bisphosphate carboxylase, small chain PF02341 RbcX protein PF00154 recA bacterial DNA recombination protein PF02463 RecF/RecN/SMC N terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17191 RecG wedge domain PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF10141 Single-strand DNA-specific exonuclease, C terminal domain PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF10141 Single-strand DNA-specific exonuclease, C terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF16124 RecQ zinc-binding PF00633 Helix-hairpin-helix motif PF02132 RecR protein PF13662 Toprim domain PF00483 Nucleotidyl transferase PF16363 GDP-mannose 4,6 dehydratase PF01370 NAD dependent epimerase/dehydratase family PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PF04321 RmlD substrate binding domain PF01351 Ribonuclease HII PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 GTP cyclohydrolase II PF00677 Lumazine binding domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF06574 FAD synthetase PF01687 Riboflavin kinase PF00885 6,7-dimethyl-8-ribityllumazine synthase PF10150 Ribonuclease E/G family PF00075 RNase H PF00834 Ribulose-phosphate 3 epimerase family PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF00687 Ribosomal protein L1p/L10e family PF00466 Ribosomal protein L10 PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF00572 Ribosomal protein L13 PF00238 Ribosomal protein L14p/L23e PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF00252 Ribosomal protein L16p/L10e PF01196 Ribosomal protein L17 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF01245 Ribosomal protein L19 PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF00453 Ribosomal protein L20 PF00829 Ribosomal prokaryotic L21 protein PF00237 Ribosomal protein L22p/L17e PF00276 Ribosomal protein L23 PF00467 KOW motif PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF01386 Ribosomal L25p family PF01016 Ribosomal L27 protein PF00830 Ribosomal L28 family PF00831 Ribosomal L29 protein PF00297 Ribosomal protein L3 PF01197 Ribosomal protein L31 PF01783 Ribosomal L32p protein family PF00471 Ribosomal protein L33 PF00468 Ribosomal protein L34 PF01632 Ribosomal protein L35 PF00444 Ribosomal protein L36 PF00573 Ribosomal protein L4/L1 family PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF00347 Ribosomal protein L6 PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF00575 S1 RNA binding domain PF00338 Ribosomal protein S10p/S20e PF00411 Ribosomal protein S11 PF00164 Ribosomal protein S12/S23 PF00416 Ribosomal protein S13/S18 PF00253 Ribosomal protein S14p/S29e PF00312 Ribosomal protein S15 PF00886 Ribosomal protein S16 PF00366 Ribosomal protein S17 PF01084 Ribosomal protein S18 PF00203 Ribosomal protein S19 PF00318 Ribosomal protein S2 PF01649 Ribosomal protein S20 PF01165 Ribosomal protein S21 PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF01250 Ribosomal protein S6 PF00177 Ribosomal protein S7p/S5e PF00410 Ribosomal protein S8 PF00380 Ribosomal protein S9/S16 PF01765 Ribosome recycling factor PF00301 Rubredoxin PF07499 RuvA, C-terminal domain PF01330 RuvA N terminal domain PF17864 RuvB AAA lid domain PF05491 RuvB C-terminal winged helix domain PF05496 Holliday junction DNA helicase RuvB P-loop domain PF02075 Crossover junction endodeoxyribonuclease RuvC PF00348 Polyprenyl synthetase PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF00344 SecY translocase PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01842 ACT domain PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF13243 Squalene-hopene cyclase C-terminal domain PF13249 Squalene-hopene cyclase N-terminal domain PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF00534 Glycosyl transferases group 1 PF00862 Sucrose synthase PF00436 Single-strand binding protein family PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF01026 TatD related DNase PF01702 Queuine tRNA-ribosyltransferase PF01964 Radical SAM ThiC family PF17792 ThiD2 family PF02581 Thiamine monophosphate synthase PF05690 Thiazole biosynthesis protein ThiG PF01842 ACT domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF00291 Pyridoxal-phosphate dependent enzyme PF00291 Pyridoxal-phosphate dependent enzyme PF00291 Pyridoxal-phosphate dependent enzyme PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF01523 Putative modulator of DNA gyrase PF13180 PDZ domain PF03170 Bacterial cellulose synthase subunit PF00535 Glycosyl transferase family 2 PF07238 PilZ domain PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF01928 CYTH domain PF03055 Retinal pigment epithelial membrane protein PF03092 BT1 family PF02681 Divergent PAP2 family PF01475 Ferric uptake regulator family PF00132 Bacterial transferase hexapeptide (six repeats) PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF02562 PhoH-like protein PF00581 Rhodanese-like domain PF01206 Sulfurtransferase TusA PF02016 LD-carboxypeptidase N-terminal domain PF17676 LD-carboxypeptidase C-terminal domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF00625 Guanylate kinase PF00149 Calcineurin-like phosphoesterase PF00814 Glycoprotease family PF01594 AI-2E family transporter PF01594 AI-2E family transporter PF01348 Type II intron maturase PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF01348 Type II intron maturase PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF13304 AAA domain, putative AbiEii toxin, Type IV TA system PF07690 Major Facilitator Superfamily PF07884 Vitamin K epoxide reductase family PF00654 Voltage gated chloride channel PF00582 Universal stress protein family PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF00999 Sodium/hydrogen exchanger family PF00005 ABC transporter PF08402 TOBE domain PF02082 Transcriptional regulator PF02082 Transcriptional regulator PF01709 Transcriptional regulator PF13393 Histidyl-tRNA synthetase PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00909 Ammonium Transporter Family PF00909 Ammonium Transporter Family PF00364 Biotin-requiring enzyme PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF02617 ATP-dependent Clp protease adaptor protein ClpS PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF14489 QueF-like protein PF02469 Fasciclin domain PF06472 ABC transporter transmembrane region 2 PF00005 ABC transporter PF01593 Flavin containing amine oxidoreductase PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF01520 N-acetylmuramoyl-L-alanine amidase PF04122 Putative cell wall binding repeat 2 PF13520 Amino acid permease PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF02567 Phenazine biosynthesis-like protein PF03741 Integral membrane protein TerC family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02386 Cation transport protein PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF00535 Glycosyl transferase family 2 PF13181 Tetratricopeptide repeat PF00535 Glycosyl transferase family 2 PF13181 Tetratricopeptide repeat PF00535 Glycosyl transferase family 2 PF13181 Tetratricopeptide repeat PF01618 MotA/TolQ/ExbB proton channel family PF02684 Lipid-A-disaccharide synthetase PF04107 Glutamate-cysteine ligase family 2(GCS2) PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00005 ABC transporter PF12697 Alpha/beta hydrolase family PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF08486 Stage II sporulation protein PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF08486 Stage II sporulation protein PF00581 Rhodanese-like domain PF16363 GDP-mannose 4,6 dehydratase PF04029 2-phosphosulpholactate phosphatase PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17764 3′ DNA-binding domain (3′BD) PF18074 Primosomal protein N C-terminal domain PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00557 Metallopeptidase family M24 PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF10664 Cyanobacterial and plastid NDH-1 subunit M PF02687 FtsX-like permease family PF18075 FtsX extracellular domain PF00005 ABC transporter PF03808 Glycosyl transferase WecB/TagA/CpsF family PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF01521 Iron-sulphur cluster biosynthesis PF08338 Domain of unknown function (DUF1731) PF01370 NAD dependent epimerase/dehydratase family PF13202 EF hand PF00923 Transaldolase/Fructose-6-phosphate aldolase PF06750 Bacterial Peptidase A24 N-terminal domain PF01478 Type IV leader peptidase family PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF00814 Glycoprotease family PF00106 short chain dehydrogenase PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00571 CBS domain PF01743 Poly A polymerase head domain PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF07689 KaiB domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF01965 DJ-1/PfpI family PF00850 Histone deacetylase domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF01590 GAF domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01590 GAF domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF14332 Domain of unknown function (DUF4388) PF00072 Response regulator receiver domain PF04966 Carbohydrate-selective porin, OprB family PF00395 S-layer homology domain PF04966 Carbohydrate-selective porin, OprB family PF00395 S-layer homology domain PF04966 Carbohydrate-selective porin, OprB family PF00395 S-layer homology domain PF04966 Carbohydrate-selective porin, OprB family PF00395 S-layer homology domain PF04055 Radical SAM superfamily PF00005 ABC transporter PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF02096 60Kd inner membrane protein PF00825 Ribonuclease P PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00563 EAL domain PF00498 FHA domain PF00990 Diguanylate cyclase, GGDEF domain PF00563 EAL domain PF00498 FHA domain PF00990 Diguanylate cyclase, GGDEF domain PF01370 NAD dependent epimerase/dehydratase family PF16363 GDP-mannose 4,6 dehydratase PF01435 Peptidase family M48 PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00849 RNA pseudouridylate synthase PF00403 Heavy-metal-associated domain PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF01979 Amidohydrolase family PF13419 Haloacid dehalogenase-like hydrolase PF00342 Phosphoglucose isomerase PF01042 Endoribonuclease L-PSP PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF03190 Protein of unknown function, DUF255 PF02152 Dihydroneopterin aldolase PF03040 CemA family PF00528 Binding-protein-dependent transport system inner membrane component PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF01628 HrcA protein C terminal domain PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PF01022 Bacterial regulatory protein, arsR family PF02310 B12 binding domain PF13282 Domain of unknown function (DUF4070) PF04055 Radical SAM superfamily PF00149 Calcineurin-like phosphoesterase PF00892 EamA-like transporter family PF01029 NusB family PF11016 Protein of unknown function (DUF2854) PF04461 Protein of unknown function (DUF520) PF13458 Periplasmic binding protein PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00085 Thioredoxin PF00085 Thioredoxin PF00462 Glutaredoxin PF08534 Redoxin PF00005 ABC transporter PF01297 Zinc-uptake complex component A periplasmic PF00692 dUTPase PF03099 Biotin/lipoate A/B protein ligase family PF01513 ATP-NAD kinase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF04015 Domain of unknown function (DUF362) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF01625 Peptide methionine sulfoxide reductase PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF05050 Methyltransferase FkbM domain PF02627 Carboxymuconolactone decarboxylase family PF04055 Radical SAM superfamily PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02632 BioY family PF00561 alpha/beta hydrolase fold PF00561 alpha/beta hydrolase fold PF00795 Carbon-nitrogen hydrolase PF02547 Queuosine biosynthesis protein PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF01464 Transglycosylase SLT domain PF14718 Soluble lytic murein transglycosylase L domain PF03109 ABC1 family PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00953 Glycosyl transferase family 4 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF01812 5-formyltetrahydrofolate cyclo-ligase family PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF03193 RsgA GTPase PF01228 Glycine radical PF02901 Pyruvate formate lyase-like PF01207 Dihydrouridine synthase (Dus) PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF01531 Glycosyl transferase family 11 PF01531 Glycosyl transferase family 11 PF01501 Glycosyl transferase family 8 PF00535 Glycosyl transferase family 2 PF01501 Glycosyl transferase family 8 PF00535 Glycosyl transferase family 2 PF01425 Amidase PF07963 Prokaryotic N-terminal methylation motif PF08334 Type II secretion system (T2SS), protein G PF00535 Glycosyl transferase family 2 PF07963 Prokaryotic N-terminal methylation motif PF14245 Type IV pilin PilA PF01584 CheW-like domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain PF01522 Polysaccharide deacetylase PF01168 Alanine racemase, N-terminal domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF01747 ATP-sulfurylase PF14306 PUA-like domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01627 Hpt domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01627 Hpt domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF11780 Protein of unknown function (DUF3318) PF01008 Initiation factor 2 subunit family PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF14815 NUDIX domain PF02657 Fe-S metabolism associated domain PF00528 Binding-protein-dependent transport system inner membrane component PF02660 Glycerol-3-phosphate acyltransferase PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF01758 Sodium Bile acid symporter family PF00936 BMC domain PF03309 Type III pantothenate kinase PF12706 Beta-lactamase superfamily domain PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF04168 A predicted alpha-helical domain with a conserved ER motif. PF14403 Circularly permuted ATP-grasp type 2 PF01432 Peptidase family M3 PF01551 Peptidase family M23 PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase PF09363 XFP C-terminal domain PF09364 XFP N-terminal domain PF03699 Uncharacterised protein family (UPF0182) PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) PF13181 Tetratricopeptide repeat PF10609 NUBPL iron-transfer P-loop NTPase PF01370 NAD dependent epimerase/dehydratase family PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00805 Pentapeptide repeats (8 copies) PF00069 Protein kinase domain PF00805 Pentapeptide repeats (8 copies) PF00069 Protein kinase domain PF00805 Pentapeptide repeats (8 copies) PF00069 Protein kinase domain PF00805 Pentapeptide repeats (8 copies) PF00069 Protein kinase domain PF00805 Pentapeptide repeats (8 copies) PF00069 Protein kinase domain PF00425 chorismate binding enzyme PF02540 NAD synthase PF09150 Orange carotenoid protein, N-terminal PF01066 CDP-alcohol phosphatidyltransferase PF01557 Fumarylacetoacetate (FAA) hydrolase family PF14495 Cytochrome c-550 domain PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF02638 Glycosyl hydrolase-like 10 PF00005 ABC transporter PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF00501 AMP-binding enzyme PF00571 CBS domain PF02163 Peptidase family M50 PF01488 Shikimate / quinate 5-dehydrogenase PF11266 Long-chain fatty aldehyde decarbonylase PF00365 Phosphofructokinase PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF02653 Branched-chain amino acid transport system / permease component PF11862 Domain of unknown function (DUF3382) PF17975 Ribonucleotide reductase alpha domain PF01061 ABC-2 type transporter PF00005 ABC transporter PF00498 FHA domain PF01061 ABC-2 type transporter PF00005 ABC transporter PF00498 FHA domain PF01061 ABC-2 type transporter PF00005 ABC transporter PF00498 FHA domain PF02654 Cobalamin-5-phosphate synthase PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF01613 Flavin reductase like domain PF00258 Flavodoxin PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF13614 AAA domain PF01903 CbiX PF13230 Glutamine amidotransferases class-II PF01070 FMN-dependent dehydrogenase PF01494 FAD binding domain PF01545 Cation efflux family PF16916 Dimerisation domain of Zinc Transporter PF00595 PDZ domain PF03572 Peptidase family S41 PF00188 Cysteine-rich secretory protein family PF01891 Cobalt uptake substrate-specific transmembrane region PF00294 pfkB family carbohydrate kinase PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF00578 AhpC/TSA family PF01728 FtsJ-like methyltransferase PF01479 S4 domain PF01063 Amino-transferase class IV PF00266 Aminotransferase class-V PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF01555 DNA methylase PF00069 Protein kinase domain PF12773 Double zinc ribbon PF00498 FHA domain PF00005 ABC transporter PF12857 TOBE-like domain PF02685 Glucokinase PF04055 Radical SAM superfamily PF10415 Fumarase C C-terminus PF00206 Lyase PF00498 FHA domain PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF00528 Binding-protein-dependent transport system inner membrane component PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF00156 Phosphoribosyl transferase domain PF00793 DAHP synthetase I family PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF02347 Glycine cleavage system P-protein PF08241 Methyltransferase domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00873 AcrB/AcrD/AcrF family PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF01266 FAD dependent oxidoreductase PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF02033 Ribosome-binding factor A PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF01435 Peptidase family M48 PF07720 Tetratricopeptide repeat PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF13180 PDZ domain PF02163 Peptidase family M50 PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13426 PAS domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00795 Carbon-nitrogen hydrolase PF13545 Crp-like helix-turn-helix domain PF04012 PspA/IM30 family PF04012 PspA/IM30 family PF00355 Rieske [2Fe-2S] domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF03976 Polyphosphate kinase 2 (PPK2) PF09366 Protein of unknown function (DUF1997) PF00528 Binding-protein-dependent transport system inner membrane component PF11378 Protein of unknown function (DUF3181) PF08241 Methyltransferase domain PF02021 Uncharacterised protein family UPF0102 PF00155 Aminotransferase class I and II PF02219 Methylenetetrahydrofolate reductase PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF01520 N-acetylmuramoyl-L-alanine amidase PF08239 Bacterial SH3 domain PF03600 Citrate transporter PF01699 Sodium/calcium exchanger protein PF11283 Protein of unknown function (DUF3084) PF01975 Survival protein SurE PF01725 Ham1 family PF00005 ABC transporter PF09383 NIL domain PF09587 Bacterial capsule synthesis protein PGA_cap PF00571 CBS domain PF01380 SIS domain PF01343 Peptidase family S49 PF17810 Arginine decarboxylase helical bundle domain PF17944 Arginine decarboxylase C-terminal helical extension PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF02374 Anion-transporting ATPase PF17886 HSP20-like domain found in ArsA PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF06949 Protein of unknown function (DUF1292) PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF13411 MerR HTH family regulatory protein PF00106 short chain dehydrogenase PF02628 Cytochrome oxidase assembly protein PF02463 RecF/RecN/SMC N terminal domain PF13640 2OG-Fe(II) oxygenase superfamily PF18331 PKHD-type hydroxylase C-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF00403 Heavy-metal-associated domain PF01925 Sulfite exporter TauE/SafE PF07992 Pyridine nucleotide-disulphide oxidoreductase PF01668 SmpB protein PF00202 Aminotransferase class-III PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF02576 RimP N-terminal domain PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF01555 DNA methylase PF03167 Uracil DNA glycosylase superfamily PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF01171 PP-loop family PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF08264 Anticodon-binding domain of tRNA PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF14403 Circularly permuted ATP-grasp type 2 PF09210 Domain of unknown function (DUF1957) PF03065 Glycosyl hydrolase family 57 PF01497 Periplasmic binding protein PF02390 Putative methyltransferase PF13579 Glycosyl transferase 4-like domain PF00534 Glycosyl transferases group 1 PF01544 CorA-like Mg2+ transporter protein PF02350 UDP-N-acetylglucosamine 2-epimerase PF01063 Amino-transferase class IV PF02705 K+ potassium transporter PF00155 Aminotransferase class I and II PF01266 FAD dependent oxidoreductase PF05670 NFACT protein RNA binding domain PF06055 Exopolysaccharide synthesis, ExoD PF00343 Carbohydrate phosphorylase PF00343 Carbohydrate phosphorylase PF00583 Acetyltransferase (GNAT) family PF01979 Amidohydrolase family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00155 Aminotransferase class I and II PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00588 SpoU rRNA Methylase family PF00392 Bacterial regulatory proteins, gntR family PF02245 Methylpurine-DNA glycosylase (MPG) PF01790 Prolipoprotein diacylglyceryl transferase PF00106 short chain dehydrogenase PF04030 D-arabinono-1,4-lactone oxidase PF01565 FAD binding domain PF01040 UbiA prenyltransferase family PF00478 IMP dehydrogenase / GMP reductase domain PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF00583 Acetyltransferase (GNAT) family PF00881 Nitroreductase family PF00009 Elongation factor Tu GTP binding domain PF16658 Class II release factor RF3, C-terminal domain PF00012 Hsp70 protein PF03793 PASTA domain PF00069 Protein kinase domain PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF00132 Bacterial transferase hexapeptide (six repeats) PF11867 Domain of unknown function (DUF3387) PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF12161 HsdM N-terminal domain PF02384 N-6 DNA Methylase PF12008 Type I restriction and modification enzyme - subunit R C terminal PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF05195 Aminopeptidase P, N-terminal domain PF00557 Metallopeptidase family M24 PF00155 Aminotransferase class I and II PF00216 Bacterial DNA-binding protein PF00391 PEP-utilising enzyme, mobile domain PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF00211 Adenylate and Guanylate cyclase catalytic domain PF00211 Adenylate and Guanylate cyclase catalytic domain PF03109 ABC1 family PF05684 Protein of unknown function (DUF819) PF01969 Protein of unknown function DUF111 PF02578 Multi-copper polyphenol oxidoreductase laccase PF05996 Ferredoxin-dependent bilin reductase PF01435 Peptidase family M48 PF13181 Tetratricopeptide repeat PF00156 Phosphoribosyl transferase domain PF00266 Aminotransferase class-V PF03652 Holliday junction resolvase PF17265 Family of unknown function (DUF5331) PF03023 Lipid II flippase MurJ PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00582 Universal stress protein family PF01209 ubiE/COQ5 methyltransferase family PF00950 ABC 3 transport family PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF05221 S-adenosyl-L-homocysteine hydrolase PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF01256 Carbohydrate kinase PF03853 YjeF-related protein N-terminus PF03702 Anhydro-N-acetylmuramic acid kinase PF00149 Calcineurin-like phosphoesterase PF04055 Radical SAM superfamily PF00005 ABC transporter PF02553 Cobalt transport protein component CbiN PF01891 Cobalt uptake substrate-specific transmembrane region PF00072 Response regulator receiver domain PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF01427 D-ala-D-ala dipeptidase PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF00999 Sodium/hydrogen exchanger family PF00582 Universal stress protein family PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00005 ABC transporter PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF07689 KaiB domain PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF01553 Acyltransferase PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF02472 Biopolymer transport protein ExbD/TolR PF07650 KH domain PF01926 50S ribosome-binding GTPase PF13180 PDZ domain PF13180 PDZ domain PF01416 tRNA pseudouridine synthase PF04371 Porphyromonas-type peptidyl-arginine deiminase PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF03209 PUCC protein PF01300 Telomere recombination PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF01676 Metalloenzyme superfamily PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF14437 MafB19-like deaminase PF01475 Ferric uptake regulator family PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00043 Glutathione S-transferase, C-terminal domain PF13417 Glutathione S-transferase, N-terminal domain PF00171 Aldehyde dehydrogenase family PF04055 Radical SAM superfamily PF00171 Aldehyde dehydrogenase family PF00465 Iron-containing alcohol dehydrogenase PF03099 Biotin/lipoate A/B protein ligase family PF01728 FtsJ-like methyltransferase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01145 SPFH domain / Band 7 family PF15975 Flotillin PF00334 Nucleoside diphosphate kinase PF00005 ABC transporter PF00155 Aminotransferase class I and II PF02361 Cobalt transport protein PF00180 Isocitrate/isopropylmalate dehydrogenase PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF13419 Haloacid dehalogenase-like hydrolase PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF03330 Lytic transglycolase PF01384 Phosphate transporter family PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF00270 DEAD/DEAH box helicase PF08148 DSHCT (NUC185) domain PF00271 Helicase conserved C-terminal domain PF14251 Domain of unknown function (DUF4346) PF01523 Putative modulator of DNA gyrase PF01593 Flavin containing amine oxidoreductase PF01169 Uncharacterized protein family UPF0016 PF00132 Bacterial transferase hexapeptide (six repeats) PF12804 MobA-like NTP transferase domain PF10502 Signal peptidase, peptidase S26 PF00202 Aminotransferase class-III PF02080 TrkA-C domain PF02254 TrkA-N domain PF03358 NADPH-dependent FMN reductase PF00636 Ribonuclease III domain PF00483 Nucleotidyl transferase PF00483 Nucleotidyl transferase PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF00069 Protein kinase domain PF00999 Sodium/hydrogen exchanger family PF01134 Glucose inhibited division protein A PF14437 MafB19-like deaminase PF01177 Asp/Glu/Hydantoin racemase PF01027 Inhibitor of apoptosis-promoting Bax1 PF01513 ATP-NAD kinase PF12697 Alpha/beta hydrolase family PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00950 ABC 3 transport family PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF13581 Histidine kinase-like ATPase domain PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF08331 Domain of unknown function (DUF1730) PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF01078 Magnesium chelatase, subunit ChlI PF13335 Magnesium chelatase, subunit ChlI C-terminal PF04960 Glutaminase PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF03773 Predicted permease PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PF04055 Radical SAM superfamily PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF02397 Bacterial sugar transferase PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00773 RNB domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF00398 Ribosomal RNA adenine dimethylase PF13180 PDZ domain PF11805 Protein of unknown function (DUF3326) PF13614 AAA domain PF00330 Aconitase family (aconitate hydratase) PF06434 Aconitate hydratase 2 N-terminus PF11791 Aconitate B N-terminal domain PF04244 Deoxyribodipyrimidine photo-lyase-related protein PF04244 Deoxyribodipyrimidine photo-lyase-related protein PF04244 Deoxyribodipyrimidine photo-lyase-related protein PF01112 Asparaginase PF02446 4-alpha-glucanotransferase PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF13735 tRNA nucleotidyltransferase domain 2 putative PF02575 YbaB/EbfC DNA-binding family PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF05552 Conserved TM helix PF02673 Bacitracin resistance protein BacA PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF01888 CbiD PF07690 Major Facilitator Superfamily PF13419 Haloacid dehalogenase-like hydrolase PF01553 Acyltransferase PF03819 MazG nucleotide pyrophosphohydrolase domain PF01916 Deoxyhypusine synthase PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00924 Mechanosensitive ion channel PF12795 Mechanosensitive ion channel porin domain PF12794 Mechanosensitive ion channel inner membrane domain 1 PF00924 Mechanosensitive ion channel PF12795 Mechanosensitive ion channel porin domain PF12794 Mechanosensitive ion channel inner membrane domain 1 PF00132 Bacterial transferase hexapeptide (six repeats) PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF00005 ABC transporter PF00005 ABC transporter PF01121 Dephospho-CoA kinase PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00459 Inositol monophosphatase family PF00459 Inositol monophosphatase family PF00155 Aminotransferase class I and II PF01938 TRAM domain PF05958 tRNA (Uracil-5-)-methyltransferase PF00902 Sec-independent protein translocase protein (TatC) PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF13614 AAA domain PF06725 3D domain PF03562 MltA specific insert domain PF00092 von Willebrand factor type A domain PF02754 Cysteine-rich domain PF04551 GcpE protein PF01230 HIT domain PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF01022 Bacterial regulatory protein, arsR family PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF02401 LytB protein PF12697 Alpha/beta hydrolase family PF08241 Methyltransferase domain PF00534 Glycosyl transferases group 1 PF00862 Sucrose synthase PF00248 Aldo/keto reductase family PF02571 Precorrin-6x reductase CbiJ/CobK PF05239 PRC-barrel domain PF01782 RimM N-terminal domain PF00497 Bacterial extracellular solute-binding proteins, family 3 PF10017 Histidine-specific methyltransferase, SAM-dependent PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PF01791 DeoC/LacD family aldolase PF01612 3'-5' exonuclease PF00570 HRDC domain PF01613 Flavin reductase like domain PF00753 Metallo-beta-lactamase superfamily PF08267 Cobalamin-independent synthase, N-terminal domain PF01717 Cobalamin-independent synthase, Catalytic domain PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N PF12169 DNA polymerase III subunits gamma and tau domain III PF11264 Thylakoid formation protein PF00924 Mechanosensitive ion channel PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00561 alpha/beta hydrolase fold PF07694 5TMR of 5TMR-LYT PF00990 Diguanylate cyclase, GGDEF domain PF00873 AcrB/AcrD/AcrF family PF01467 Cytidylyltransferase-like PF00676 Dehydrogenase E1 component PF13580 SIS domain PF13378 Enolase C-terminal domain-like PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF01467 Cytidylyltransferase-like PF00795 Carbon-nitrogen hydrolase PF02540 NAD synthase PF00578 AhpC/TSA family PF00528 Binding-protein-dependent transport system inner membrane component PF00578 AhpC/TSA family PF00990 Diguanylate cyclase, GGDEF domain PF01641 SelR domain PF00753 Metallo-beta-lactamase superfamily PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF17770 Ribonuclease J C-terminal domain PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF00300 Histidine phosphatase superfamily (branch 1) PF00962 Adenosine/AMP deaminase PF00694 Aconitase C-terminal domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF01189 16S rRNA methyltransferase RsmB/F PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF PF13636 RNA-binding PUA-like domain of methyltransferase RsmF PF11897 Protein of unknown function (DUF3417) PF00343 Carbohydrate phosphorylase PF00583 Acetyltransferase (GNAT) family PF13380 CoA binding domain PF13607 Succinyl-CoA ligase like flavodoxin domain PF00528 Binding-protein-dependent transport system inner membrane component PF00300 Histidine phosphatase superfamily (branch 1) PF01048 Phosphorylase superfamily PF00483 Nucleotidyl transferase PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF02545 Maf-like protein PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF05523 WxcM-like, C-terminal PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00535 Glycosyl transferase family 2 PF01370 NAD dependent epimerase/dehydratase family PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF00999 Sodium/hydrogen exchanger family PF02080 TrkA-C domain PF02254 TrkA-N domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF02633 Creatinine amidohydrolase PF12697 Alpha/beta hydrolase family PF12697 Alpha/beta hydrolase family PF01738 Dienelactone hydrolase family PF02481 DNA recombination-mediator protein A PF17782 DprA winged helix domain PF03808 Glycosyl transferase WecB/TagA/CpsF family PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF03471 Transporter associated domain PF00999 Sodium/hydrogen exchanger family PF00069 Protein kinase domain PF08865 Domain of unknown function (DUF1830) PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF17092 Penicillin-binding protein OB-like domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF00400 WD domain, G-beta repeat PF01926 50S ribosome-binding GTPase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00582 Universal stress protein family PF00582 Universal stress protein family PF00300 Histidine phosphatase superfamily (branch 1) PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF04055 Radical SAM superfamily PF18693 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF01740 STAS domain PF02325 YGGT family PF02086 D12 class N6 adenine-specific DNA methyltransferase PF01098 Cell cycle protein PF02130 Uncharacterized protein family UPF0054 PF01219 Prokaryotic diacylglycerol kinase PF01467 Cytidylyltransferase-like PF00294 pfkB family carbohydrate kinase PF04055 Radical SAM superfamily PF01509 TruB family pseudouridylate synthase (N terminal domain) PF01746 tRNA (Guanine-1)-methyltransferase PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08447 PAS fold PF08448 PAS fold PF12419 SNF2 Helicase protein PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF00753 Metallo-beta-lactamase superfamily PF11127 Protein of unknown function (DUF2892) PF00581 Rhodanese-like domain PF01925 Sulfite exporter TauE/SafE PF02086 D12 class N6 adenine-specific DNA methyltransferase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00111 2Fe-2S iron-sulfur cluster binding domain PF00459 Inositol monophosphatase family PF03109 ABC1 family PF01327 Polypeptide deformylase PF01597 Glycine cleavage H-protein PF00326 Prolyl oligopeptidase family PF13614 AAA domain PF03749 Sugar fermentation stimulation protein RE domain PF17746 SfsA N-terminal OB domain PF10792 Protein of unknown function (DUF2605) PF00171 Aldehyde dehydrogenase family PF02915 Rubrerythrin PF06508 Queuosine biosynthesis protein QueC PF00210 Ferritin-like domain PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF04452 RNA methyltransferase PF13085 2Fe-2S iron-sulfur cluster binding domain PF00005 ABC transporter PF17912 MalK OB fold domain PF03459 TOBE domain PF03816 Cell envelope-related transcriptional attenuator domain PF02457 DisA bacterial checkpoint controller nucleotide-binding PF01255 Putative undecaprenyl diphosphate synthase PF18579 Rubisco accumulation factor 1 helix turn helix domain PF18578 Rubisco accumulation factor 1 alpha helical domain PF18087 Rubisco Assembly chaperone C-terminal domain PF00005 ABC transporter PF01467 Cytidylyltransferase-like PF00294 pfkB family carbohydrate kinase PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF07977 FabA-like domain PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF00132 Bacterial transferase hexapeptide (six repeats) PF00588 SpoU rRNA Methylase family PF03552 Cellulose synthase PF00535 Glycosyl transferase family 2 PF07238 PilZ domain PF05685 Putative restriction endonuclease PF01451 Low molecular weight phosphotyrosine protein phosphatase PF03881 Fructosamine kinase PF10502 Signal peptidase, peptidase S26 PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF17806 Sarcosine oxidase A3 domain PF00696 Amino acid kinase family PF01842 ACT domain PF13840 ACT domain PF00892 EamA-like transporter family PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF12849 PBP superfamily domain PF03477 ATP cone domain PF01276 Orn/Lys/Arg decarboxylase, major domain PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF01434 Peptidase family M41 PF01555 DNA methylase PF00005 ABC transporter PF00005 ABC transporter PF00331 Glycosyl hydrolase family 10 PF12791 Anti-sigma factor N-terminus PF00005 ABC transporter PF01458 Uncharacterized protein family (UPF0051) PF06470 SMC proteins Flexible Hinge Domain PF02463 RecF/RecN/SMC N terminal domain PF01081 KDPG and KHG aldolase PF03170 Bacterial cellulose synthase subunit PF03552 Cellulose synthase PF00535 Glycosyl transferase family 2 PF07238 PilZ domain PF03552 Cellulose synthase PF00535 Glycosyl transferase family 2 PF07238 PilZ domain PF13847 Methyltransferase domain PF01571 Aminomethyltransferase folate-binding domain PF01933 Uncharacterised protein family UPF0052 PF01209 ubiE/COQ5 methyltransferase family PF01551 Peptidase family M23 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF12320 Type 5 capsule protein repressor C-terminal domain PF12706 Beta-lactamase superfamily domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00005 ABC transporter PF11838 ERAP1-like C-terminal domain PF01433 Peptidase family M1 domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF06838 Methionine gamma-lyase PF07085 DRTGG domain PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02151 UvrB/uvrC motif PF12344 Ultra-violet resistance protein B PF17757 UvrB interaction domain PF02542 YgbB family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02577 Bifunctional nuclease PF01741 Large-conductance mechanosensitive channel, MscL PF02223 Thymidylate kinase PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment PF01297 Zinc-uptake complex component A periplasmic PF00005 ABC transporter PF01795 MraW methylase family PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF00800 Prephenate dehydratase PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF00459 Inositol monophosphatase family PF00953 Glycosyl transferase family 4 PF02464 Competence-damaged protein PF18146 Damage-inducible protein CinA KH domain PF00994 Probable molybdopterin binding domain PF01740 STAS domain PF00916 Sulfate permease family PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF06206 CpeT/CpcT family (DUF1001) PF01479 S4 domain PF17774 Putative RNA-binding domain in YlmH PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF03575 Peptidase family S51 PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF08443 RimK-like ATP-grasp domain PF05378 Hydantoinase/oxoprolinase N-terminal region PF01968 Hydantoinase/oxoprolinase PF13476 AAA domain PF00092 von Willebrand factor type A domain PF01145 SPFH domain / Band 7 family PF01914 MarC family integral membrane protein PF00877 NlpC/P60 family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF16363 GDP-mannose 4,6 dehydratase PF01062 Bestrophin, RFP-TM, chloride channel PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PF02565 Recombination protein O C terminal PF11967 Recombination protein O N terminal PF08673 Phosphoserine phosphatase RsbU, N-terminal domain PF07228 Stage II sporulation protein E (SpoIIE) PF01624 MutS domain I PF05188 MutS domain II PF05192 MutS domain III PF05190 MutS family domain IV PF00488 MutS domain V PF03109 ABC1 family PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PF04055 Radical SAM superfamily PF18693 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF04286 Protein of unknown function (DUF445) PF01494 FAD binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF03793 PASTA domain PF00069 Protein kinase domain PF04434 SWIM zinc finger PF00860 Permease family PF00156 Phosphoribosyl transferase domain PF00871 Acetokinase family PF11741 AMIN domain PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF07660 Secretin and TonB N terminus short domain PF03816 Cell envelope-related transcriptional attenuator domain PF00480 ROK family PF00535 Glycosyl transferase family 2 PF01266 FAD dependent oxidoreductase PF05690 Thiazole biosynthesis protein ThiG PF01940 Integral membrane protein DUF92 PF00285 Citrate synthase, C-terminal domain PF02934 GatB/GatE catalytic domain PF02637 GatB domain PF06150 ChaB PF01883 Iron-sulfur cluster assembly protein PF10609 NUBPL iron-transfer P-loop NTPase PF01252 Signal peptidase (SPase) II PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF07689 KaiB domain PF00069 Protein kinase domain PF13180 PDZ domain PF08719 Domain of unknown function (DUF1768) PF01131 DNA topoisomerase PF01751 Toprim domain PF13368 Topoisomerase C-terminal repeat PF00121 Triosephosphate isomerase PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF00290 Tryptophan synthase alpha chain PF00291 Pyridoxal-phosphate dependent enzyme PF00218 Indole-3-glycerol phosphate synthase PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF00117 Glutamine amidotransferase class-I PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF00579 tRNA synthetases class I (W and Y) PF00085 Thioredoxin PF00085 Thioredoxin PF00889 Elongation factor TS PF11910 Cyanobacterial and plant NDH-1 subunit O PF04304 Protein of unknown function (DUF454) PF01722 BolA-like protein PF02069 Prokaryotic metallothionein PF01106 NifU-like domain PF02597 ThiS family PF02416 mttA/Hcf106 family PF02686 Glu-tRNAGln amidotransferase C subunit PF00970 Oxidoreductase FAD-binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00175 Oxidoreductase NAD-binding domain PF01329 Pterin 4 alpha carbinolamine dehydratase PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF08331 Domain of unknown function (DUF1730) PF00037 4Fe-4S binding domain PF17275 Family of unknown function (DUF5340) PF00762 Ferrochelatase PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF04025 Domain of unknown function (DUF370) PF10742 Protein of unknown function (DUF2555) PF01740 STAS domain PF00762 Ferrochelatase PF01809 Putative membrane protein insertion efficiency factor PF01476 LysM domain PF03734 L,D-transpeptidase catalytic domain PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF08078 PsaX family PF00462 Glutaredoxin PF02597 ThiS family PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF02617 ATP-dependent Clp protease adaptor protein ClpS PF08041 PetM family of cytochrome b6f complex subunit 7 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00762 Ferrochelatase PF02594 Uncharacterised ACR, YggU family COG1872 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF02153 Prephenate dehydrogenase PF01479 S4 domain PF00579 tRNA synthetases class I (W and Y) PF01040 UbiA prenyltransferase family PF02441 Flavoprotein PF00547 Urease, gamma subunit PF00699 Urease beta subunit PF01979 Amidohydrolase family PF00449 Urease alpha-subunit, N-terminal domain PF01774 UreD urease accessory protein PF05194 UreE urease accessory protein, C-terminal domain PF02814 UreE urease accessory protein, N-terminal domain PF01730 UreF PF02492 CobW/HypB/UreG, nucleotide-binding domain PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF01541 GIY-YIG catalytic domain PF12826 Helix-hairpin-helix motif PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF05969 Photosystem II complex subunit Ycf12 PF01458 Uncharacterized protein family (UPF0051) PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00515 Tetratricopeptide repeat PF13176 Tetratricopeptide repeat PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF05368 NmrA-like family PF13460 NAD(P)H-binding PF02392 Ycf4 PF00436 Single-strand binding protein family PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF14870 Photosynthesis system II assembly factor YCF48 PF10693 Protein of unknown function (DUF2499) PF04472 Cell division protein SepF PF04472 Cell division protein SepF PF10726 Protein of function (DUF2518) PF00583 Acetyltransferase (GNAT) family PF05419 GUN4-like PF16416 ARM-like repeat domain, GUN4-N terminal PF10674 Protein of unknown function (DUF2488) PF12452 Protein of unknown function (DUF3685) PF00072 Response regulator receiver domain PF12706 Beta-lactamase superfamily domain PF01521 Iron-sulphur cluster biosynthesis PF09367 CpeS-like protein PF02915 Rubrerythrin PF16166 Chloroplast import apparatus Tic20-like PF01192 RNA polymerase Rpb6 PF01171 PP-loop family PF09179 TilS substrate binding domain PF02405 Permease MlaE PF00462 Glutaredoxin PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) PF07444 Ycf66 protein N-terminus PF01737 YCF9 PF17876 Cold shock domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain