locus-tag class description TM_0006 PF13378 Enolase C-terminal domain-like TM_0006 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TM_0008 PF04199 Putative cyclase TM_0010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM_0010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TM_0010 PF00037 4Fe-4S binding domain TM_0014 PF02743 Cache domain TM_0014 PF00672 HAMP domain TM_0014 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_0015 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TM_0017 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TM_0017 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TM_0018 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM_0020 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TM_0021 PF02641 Uncharacterized ACR, COG1993 TM_0022 PF01119 DNA mismatch repair protein, C-terminal domain TM_0022 PF08676 MutL C terminal dimerisation domain TM_0023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_0024 PF00722 Glycosyl hydrolases family 16 TM_0027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0027 PF00005 ABC transporter TM_0028 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0028 PF00005 ABC transporter TM_0030 PF00528 Binding-protein-dependent transport system inner membrane component TM_0031 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_0032 PF00480 ROK family TM_0036 PF03266 NTPase TM_0037 PF01966 HD domain TM_0038 PF01242 6-pyruvoyl tetrahydropterin synthase TM_0039 PF02649 Type I GTP cyclohydrolase folE2 TM_0040 PF00809 Pterin binding enzyme TM_0041 PF02152 Dihydroneopterin aldolase TM_0041 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TM_0042 PF00557 Metallopeptidase family M24 TM_0042 PF01321 Creatinase/Prolidase N-terminal domain TM_0043 PF00664 ABC transporter transmembrane region TM_0043 PF00005 ABC transporter TM_0047 PF12323 Helix-turn-helix domain TM_0047 PF07282 Putative transposase DNA-binding domain TM_0047 PF01385 Probable transposase TM_0049 PF04015 Domain of unknown function (DUF362) TM_0051 PF07664 Ferrous iron transport protein B C terminus TM_0051 PF04023 FeoA domain TM_0051 PF02421 Ferrous iron transport protein B TM_0051 PF17910 FeoB cytosolic helical domain TM_0051 PF07670 Nucleoside recognition TM_0055 PF07477 Glycosyl hydrolase family 67 C-terminus TM_0055 PF07488 Glycosyl hydrolase family 67 middle domain TM_0055 PF03648 Glycosyl hydrolase family 67 N-terminus TM_0056 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_0057 PF00005 ABC transporter TM_0057 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0058 PF00005 ABC transporter TM_0058 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0059 PF00528 Binding-protein-dependent transport system inner membrane component TM_0059 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_0060 PF00528 Binding-protein-dependent transport system inner membrane component TM_0061 PF00331 Glycosyl hydrolase family 10 TM_0061 PF02018 Carbohydrate binding domain TM_0061 PF06452 Carbohydrate family 9 binding domain-like TM_0064 PF02614 Glucuronate isomerase TM_0065 PF09339 IclR helix-turn-helix domain TM_0065 PF01614 Bacterial transcriptional regulator TM_0066 PF01081 KDPG and KHG aldolase TM_0068 PF01232 Mannitol dehydrogenase Rossmann domain TM_0068 PF08125 Mannitol dehydrogenase C-terminal domain TM_0069 PF03786 D-mannonate dehydratase (UxuA) TM_0070 PF00331 Glycosyl hydrolase family 10 TM_0071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_0072 PF00528 Binding-protein-dependent transport system inner membrane component TM_0073 PF00528 Binding-protein-dependent transport system inner membrane component TM_0073 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_0074 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0074 PF00005 ABC transporter TM_0075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0075 PF00005 ABC transporter TM_0076 PF01915 Glycosyl hydrolase family 3 C-terminal domain TM_0076 PF14310 Fibronectin type III-like domain TM_0076 PF00933 Glycosyl hydrolase family 3 N terminal domain TM_0077 PF05448 Acetyl xylan esterase (AXE1) TM_0078 PF00005 ABC transporter TM_0079 PF01032 FecCD transport family TM_0080 PF01497 Periplasmic binding protein TM_0081 PF02623 FliW protein TM_0082 PF00669 Bacterial flagellin N-terminal helical region TM_0083 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM_0083 PF07196 Flagellin hook IN motif TM_0086 PF03023 Lipid II flippase MurJ TM_0087 PF01875 Memo-like protein TM_0088 PF11741 AMIN domain TM_0088 PF07660 Secretin and TonB N terminus short domain TM_0088 PF03958 Bacterial type II/III secretion system short domain TM_0088 PF00263 Bacterial type II and III secretion system protein TM_0094 PF00482 Type II secretion system (T2SS), protein F TM_0095 PF02915 Rubrerythrin TM_0096 PF01207 Dihydrouridine synthase (Dus) TM_0097 PF01467 Cytidylyltransferase-like TM_0098 PF01926 50S ribosome-binding GTPase TM_0098 PF01018 GTP1/OBG TM_0098 PF09269 Domain of unknown function (DUF1967) TM_0100 PF12826 Helix-hairpin-helix motif TM_0100 PF01653 NAD-dependent DNA ligase adenylation domain TM_0100 PF03120 NAD-dependent DNA ligase OB-fold domain TM_0100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TM_0100 PF00533 BRCA1 C Terminus (BRCT) domain TM_0108 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TM_0110 PF00480 ROK family TM_0110 PF01325 Iron dependent repressor, N-terminal DNA binding domain TM_0111 PF00465 Iron-containing alcohol dehydrogenase TM_0112 PF02653 Branched-chain amino acid transport system / permease component TM_0113 PF01522 Polysaccharide deacetylase TM_0113 PF03422 Carbohydrate binding module (family 6) TM_0113 PF00457 Glycosyl hydrolases family 11 TM_0115 PF00005 ABC transporter TM_0116 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM_0116 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM_0118 PF03477 ATP cone domain TM_0118 PF00317 Ribonucleotide reductase, all-alpha domain TM_0118 PF02867 Ribonucleotide reductase, barrel domain TM_0120 PF00881 Nitroreductase family TM_0123 PF01297 Zinc-uptake complex component A periplasmic TM_0124 PF00005 ABC transporter TM_0125 PF00950 ABC 3 transport family TM_0126 PF00072 Response regulator receiver domain TM_0126 PF00486 Transcriptional regulatory protein, C terminal TM_0128 PF00364 Biotin-requiring enzyme TM_0128 PF00682 HMGL-like TM_0128 PF02436 Conserved carboxylase domain TM_0130 PF07690 Major Facilitator Superfamily TM_0132 PF00700 Bacterial flagellin C-terminal helical region TM_0132 PF00669 Bacterial flagellin N-terminal helical region TM_0133 PF00857 Isochorismatase family TM_0134 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0136 PF04055 Radical SAM superfamily TM_0137 PF00290 Tryptophan synthase alpha chain TM_0138 PF00291 Pyridoxal-phosphate dependent enzyme TM_0139 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TM_0140 PF00218 Indole-3-glycerol phosphate synthase TM_0141 PF00117 Glutamine amidotransferase class-I TM_0141 PF02885 Glycosyl transferase family, helical bundle domain TM_0141 PF00591 Glycosyl transferase family, a/b domain TM_0142 PF04715 Anthranilate synthase component I, N terminal region TM_0142 PF00425 chorismate binding enzyme TM_0143 PF00072 Response regulator receiver domain TM_0143 PF00990 Diguanylate cyclase, GGDEF domain TM_0145 PF00814 Glycoprotease family TM_0146 PF06689 ClpX C4-type zinc finger TM_0146 PF10431 C-terminal, D2-small domain, of ClpB protein TM_0146 PF07724 AAA domain (Cdc48 subfamily) TM_0148 PF01380 SIS domain TM_0149 PF02504 Fatty acid synthesis protein TM_0150 PF01783 Ribosomal L32p protein family TM_0155 PF00800 Prephenate dehydratase TM_0155 PF01842 ACT domain TM_0155 PF01817 Chorismate mutase type II TM_0156 PF00245 Alkaline phosphatase TM_0158 PF01790 Prolipoprotein diacylglyceryl transferase TM_0159 PF01725 Ham1 family TM_0161 PF00348 Polyprenyl synthetase TM_0165 PF01330 RuvA N terminal domain TM_0165 PF07499 RuvA, C-terminal domain TM_0166 PF02875 Mur ligase family, glutamate ligase domain TM_0166 PF08245 Mur ligase middle domain TM_0167 PF01676 Metalloenzyme superfamily TM_0168 PF09334 tRNA synthetases class I (M) TM_0168 PF13603 Leucyl-tRNA synthetase, Domain 2 TM_0168 PF00133 tRNA synthetases class I (I, L, M and V) TM_0168 PF08264 Anticodon-binding domain of tRNA TM_0169 PF02629 CoA binding domain TM_0169 PF06971 Putative DNA-binding protein N-terminus TM_0172 PF05221 S-adenosyl-L-homocysteine hydrolase TM_0172 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TM_0173 PF00270 DEAD/DEAH box helicase TM_0173 PF01751 Toprim domain TM_0173 PF01131 DNA topoisomerase TM_0173 PF17915 Reverse gyrase zinc finger TM_0174 PF03030 Inorganic H+ pyrophosphatase TM_0175 PF00550 Phosphopantetheine attachment site TM_0177 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TM_0177 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TM_0178 PF17764 3′ DNA-binding domain (3′BD) TM_0178 PF18074 Primosomal protein N C-terminal domain TM_0178 PF04851 Type III restriction enzyme, res subunit TM_0178 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TM_0182 PF04055 Radical SAM superfamily TM_0182 PF01938 TRAM domain TM_0182 PF00919 Uncharacterized protein family UPF0004 TM_0183 PF00795 Carbon-nitrogen hydrolase TM_0183 PF02540 NAD synthase TM_0184 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TM_0184 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TM_0184 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TM_0184 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TM_0186 PF01966 HD domain TM_0186 PF00072 Response regulator receiver domain TM_0187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_0187 PF00072 Response regulator receiver domain TM_0187 PF09308 LuxQ, periplasmic TM_0187 PF00512 His Kinase A (phospho-acceptor) domain TM_0188 PF01980 tRNA-methyltransferase O TM_0190 PF01032 FecCD transport family TM_0191 PF00005 ABC transporter TM_0192 PF04232 Stage V sporulation protein S (SpoVS) TM_0193 PF03649 Uncharacterised protein family (UPF0014) TM_0194 PF00005 ABC transporter TM_0195 PF02541 Ppx/GppA phosphatase family TM_0197 PF01171 PP-loop family TM_0198 PF07724 AAA domain (Cdc48 subfamily) TM_0198 PF10431 C-terminal, D2-small domain, of ClpB protein TM_0198 PF17871 AAA lid domain TM_0198 PF00004 ATPase family associated with various cellular activities (AAA) TM_0198 PF02861 Clp amino terminal domain, pathogenicity island component TM_0199 PF18073 Rubredoxin metal binding domain TM_0200 PF00633 Helix-hairpin-helix motif TM_0200 PF02457 DisA bacterial checkpoint controller nucleotide-binding TM_0200 PF10635 DisA bacterial checkpoint controller linker region TM_0201 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TM_0201 PF02906 Iron only hydrogenase large subunit, C-terminal domain TM_0201 PF00037 4Fe-4S binding domain TM_0201 PF02256 Iron hydrogenase small subunit TM_0204 PF00005 ABC transporter TM_0205 PF00270 DEAD/DEAH box helicase TM_0205 PF00271 Helicase conserved C-terminal domain TM_0205 PF17191 RecG wedge domain TM_0208 PF00224 Pyruvate kinase, barrel domain TM_0208 PF02887 Pyruvate kinase, alpha/beta domain TM_0209 PF00365 Phosphofructokinase TM_0211 PF01571 Aminomethyltransferase folate-binding domain TM_0211 PF08669 Glycine cleavage T-protein C-terminal barrel domain TM_0212 PF01597 Glycine cleavage H-protein TM_0213 PF02347 Glycine cleavage system P-protein TM_0214 PF02347 Glycine cleavage system P-protein TM_0215 PF01042 Endoribonuclease L-PSP TM_0216 PF02091 Glycyl-tRNA synthetase alpha subunit TM_0217 PF05746 DALR anticodon binding domain TM_0217 PF02092 Glycyl-tRNA synthetase beta subunit TM_0218 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM_0218 PF18269 T3SS EscN ATPase C-terminal domain TM_0218 PF02874 ATP synthase alpha/beta family, beta-barrel domain TM_0219 PF02108 Flagellar assembly protein FliH TM_0220 PF01706 FliG C-terminal domain TM_0220 PF14841 FliG middle domain TM_0220 PF14842 FliG N-terminal domain TM_0221 PF01514 Secretory protein of YscJ/FliF family TM_0221 PF08345 Flagellar M-ring protein C-terminal TM_0222 PF00005 ABC transporter TM_0224 PF08279 HTH domain TM_0224 PF02237 Biotin protein ligase C terminal domain TM_0224 PF03099 Biotin/lipoate A/B protein ligase family TM_0225 PF00291 Pyridoxal-phosphate dependent enzyme TM_0228 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TM_0228 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM_0228 PF00037 4Fe-4S binding domain TM_0231 PF08245 Mur ligase middle domain TM_0231 PF02875 Mur ligase family, glutamate ligase domain TM_0231 PF01225 Mur ligase family, catalytic domain TM_0232 PF04101 Glycosyltransferase family 28 C-terminal domain TM_0232 PF03033 Glycosyltransferase family 28 N-terminal domain TM_0233 PF01098 Cell cycle protein TM_0234 PF08245 Mur ligase middle domain TM_0235 PF00953 Glycosyl transferase family 4 TM_0235 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TM_0236 PF08245 Mur ligase middle domain TM_0236 PF02875 Mur ligase family, glutamate ligase domain TM_0236 PF01225 Mur ligase family, catalytic domain TM_0237 PF01225 Mur ligase family, catalytic domain TM_0237 PF08245 Mur ligase middle domain TM_0237 PF02875 Mur ligase family, glutamate ligase domain TM_0239 PF00132 Bacterial transferase hexapeptide (six repeats) TM_0239 PF00483 Nucleotidyl transferase TM_0240 PF00483 Nucleotidyl transferase TM_0240 PF00132 Bacterial transferase hexapeptide (six repeats) TM_0243 PF04055 Radical SAM superfamily TM_0243 PF06968 Biotin and Thiamin Synthesis associated domain TM_0244 PF10531 SLBB domain TM_0244 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM_0244 PF13237 4Fe-4S dicluster domain TM_0244 PF13375 RnfC Barrel sandwich hybrid domain TM_0245 PF03116 NQR2, RnfD, RnfE family TM_0247 PF02508 Rnf-Nqr subunit, membrane protein TM_0248 PF02508 Rnf-Nqr subunit, membrane protein TM_0249 PF04060 Putative Fe-S cluster TM_0249 PF13187 4Fe-4S dicluster domain TM_0250 PF02481 DNA recombination-mediator protein A TM_0250 PF18255 DNA processing protein A sterile alpha motif domain TM_0251 PF02599 Global regulator protein family TM_0252 PF02686 Glu-tRNAGln amidotransferase C subunit TM_0253 PF02021 Uncharacterised protein family UPF0102 TM_0255 PF00830 Ribosomal L28 family TM_0258 PF01131 DNA topoisomerase TM_0258 PF01751 Toprim domain TM_0259 PF07478 D-ala D-ala ligase C-terminus TM_0259 PF01820 D-ala D-ala ligase N-terminus TM_0261 PF01384 Phosphate transporter family TM_0262 PF00712 DNA polymerase III beta subunit, N-terminal domain TM_0262 PF02767 DNA polymerase III beta subunit, central domain TM_0262 PF02768 DNA polymerase III beta subunit, C-terminal domain TM_0263 PF01134 Glucose inhibited division protein A TM_0263 PF13932 GidA associated domain TM_0264 PF01479 S4 domain TM_0264 PF00849 RNA pseudouridylate synthase TM_0265 PF01541 GIY-YIG catalytic domain TM_0265 PF02151 UvrB/uvrC motif TM_0265 PF08459 UvrC Helix-hairpin-helix N-terminal TM_0266 PF00216 Bacterial DNA-binding protein TM_0267 PF10396 GTP-binding protein TrmE N-terminus TM_0267 PF01926 50S ribosome-binding GTPase TM_0267 PF12631 MnmE helical domain TM_0268 PF02965 Vitamin B12 dependent methionine synthase, activation domain TM_0268 PF02607 B12 binding domain TM_0268 PF02310 B12 binding domain TM_0268 PF00809 Pterin binding enzyme TM_0268 PF02574 Homocysteine S-methyltransferase TM_0270 PF02219 Methylenetetrahydrofolate reductase TM_0270 PF02574 Homocysteine S-methyltransferase TM_0272 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TM_0272 PF02896 PEP-utilising enzyme, TIM barrel domain TM_0272 PF00391 PEP-utilising enzyme, mobile domain TM_0273 PF01116 Fructose-bisphosphate aldolase class-II TM_0274 PF00871 Acetokinase family TM_0275 PF00392 Bacterial regulatory proteins, gntR family TM_0276 PF11762 L-arabinose isomerase C-terminal domain TM_0276 PF02610 L-arabinose isomerase TM_0278 PF00528 Binding-protein-dependent transport system inner membrane component TM_0279 PF00528 Binding-protein-dependent transport system inner membrane component TM_0281 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TM_0282 PF01263 Aldose 1-epimerase TM_0283 PF00596 Class II Aldolase and Adducin N-terminal domain TM_0284 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM_0284 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM_0285 PF13685 Iron-containing alcohol dehydrogenase TM_0287 PF00005 ABC transporter TM_0287 PF00664 ABC transporter transmembrane region TM_0288 PF00005 ABC transporter TM_0288 PF00664 ABC transporter transmembrane region TM_0289 PF00365 Phosphofructokinase TM_0290 PF00285 Citrate synthase, C-terminal domain TM_0291 PF00330 Aconitase family (aconitate hydratase) TM_0292 PF00694 Aconitase C-terminal domain TM_0293 PF00171 Aldehyde dehydrogenase family TM_0294 PF01472 PUA domain TM_0294 PF00696 Amino acid kinase family TM_0295 PF00923 Transaldolase/Fructose-6-phosphate aldolase TM_0296 PF00294 pfkB family carbohydrate kinase TM_0298 PF16912 Glucose dehydrogenase C-terminus TM_0298 PF08240 Alcohol dehydrogenase GroES-like domain TM_0299 PF00356 Bacterial regulatory proteins, lacI family TM_0301 PF00528 Binding-protein-dependent transport system inner membrane component TM_0302 PF00528 Binding-protein-dependent transport system inner membrane component TM_0302 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_0303 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0303 PF00005 ABC transporter TM_0304 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0304 PF00005 ABC transporter TM_0305 PF00942 Cellulose binding domain TM_0305 PF03442 Carbohydrate binding domain X2 TM_0308 PF01055 Glycosyl hydrolases family 31 TM_0308 PF13802 Galactose mutarotase-like TM_0309 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_0310 PF02449 Beta-galactosidase TM_0310 PF08532 Beta-galactosidase trimerisation domain TM_0310 PF08533 Beta-galactosidase C-terminal domain TM_0312 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TM_0312 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TM_0313 PF00248 Aldo/keto reductase family TM_0317 PF00403 Heavy-metal-associated domain TM_0318 PF01209 ubiE/COQ5 methyltransferase family TM_0322 PF03480 Bacterial extracellular solute-binding protein, family 7 TM_0324 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TM_0326 PF01380 SIS domain TM_0326 PF01418 Helix-turn-helix domain, rpiR family TM_0327 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TM_0327 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TM_0328 PF01555 DNA methylase TM_0330 PF07969 Amidohydrolase family TM_0331 PF00156 Phosphoribosyl transferase domain TM_0332 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TM_0333 PF01180 Dihydroorotate dehydrogenase TM_0334 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TM_0336 PF12146 Serine aminopeptidase, S33 TM_0336 PF13026 Protein of unknown function (DUF3887) TM_0337 PF04055 Radical SAM superfamily TM_0337 PF08497 Radical SAM N-terminal TM_0343 PF00793 DAHP synthetase I family TM_0343 PF18152 DAHP synthase ferredoxin-like domain TM_0345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TM_0346 PF08501 Shikimate dehydrogenase substrate binding domain TM_0346 PF01488 Shikimate / quinate 5-dehydrogenase TM_0347 PF01264 Chorismate synthase TM_0348 PF01761 3-dehydroquinate synthase TM_0348 PF01202 Shikimate kinase TM_0349 PF01220 Dehydroquinase class II TM_0351 PF00005 ABC transporter TM_0351 PF02687 FtsX-like permease family TM_0351 PF12704 MacB-like periplasmic core domain TM_0352 PF00005 ABC transporter TM_0353 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TM_0356 PF00291 Pyridoxal-phosphate dependent enzyme TM_0356 PF13291 ACT domain TM_0358 PF00781 Diacylglycerol kinase catalytic domain TM_0360 PF03819 MazG nucleotide pyrophosphohydrolase domain TM_0362 PF01261 Xylose isomerase-like TIM barrel TM_0364 PF00128 Alpha amylase, catalytic domain TM_0364 PF09178 Domain of unknown function (DUF1945) TM_0365 PF02127 Aminopeptidase I zinc metalloprotease (M18) TM_0366 PF00730 HhH-GPD superfamily base excision DNA repair protein TM_0366 PF00633 Helix-hairpin-helix motif TM_0366 PF10576 Iron-sulfur binding domain of endonuclease III TM_0370 PF06745 KaiC TM_0371 PF02863 Arginine repressor, C-terminal domain TM_0371 PF01316 Arginine repressor, DNA binding domain TM_0372 PF00873 AcrB/AcrD/AcrF family TM_0373 PF00012 Hsp70 protein TM_0374 PF00011 Hsp20/alpha crystallin family TM_0375 PF06130 Phosphate propanoyltransferase TM_0376 PF01925 Sulfite exporter TauE/SafE TM_0379 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TM_0379 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0381 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0381 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TM_0382 PF00730 HhH-GPD superfamily base excision DNA repair protein TM_0382 PF14815 NUDIX domain TM_0382 PF00633 Helix-hairpin-helix motif TM_0383 PF00881 Nitroreductase family TM_0385 PF03477 ATP cone domain TM_0385 PF13597 Anaerobic ribonucleoside-triphosphate reductase TM_0386 PF00881 Nitroreductase family TM_0389 PF00005 ABC transporter TM_0392 PF00534 Glycosyl transferases group 1 TM_0396 PF13247 4Fe-4S dicluster domain TM_0396 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0396 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TM_0397 PF01645 Conserved region in glutamate synthase TM_0397 PF13187 4Fe-4S dicluster domain TM_0398 PF00310 Glutamine amidotransferases class-II TM_0399 PF00072 Response regulator receiver domain TM_0399 PF00486 Transcriptional regulatory protein, C terminal TM_0400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_0400 PF00512 His Kinase A (phospho-acceptor) domain TM_0400 PF00672 HAMP domain TM_0401 PF00265 Thymidine kinase TM_0402 PF00909 Ammonium Transporter Family TM_0403 PF00543 Nitrogen regulatory protein P-II TM_0405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM_0408 PF00072 Response regulator receiver domain TM_0408 PF01339 CheB methylesterase TM_0409 PF04225 Opacity-associated protein A LysM-like domain TM_0409 PF01551 Peptidase family M23 TM_0411 PF01047 MarR family TM_0411 PF00480 ROK family TM_0412 PF00107 Zinc-binding dehydrogenase TM_0412 PF08240 Alcohol dehydrogenase GroES-like domain TM_0413 PF02633 Creatinine amidohydrolase TM_0414 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TM_0414 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TM_0416 PF01261 Xylose isomerase-like TIM barrel TM_0417 PF03239 Iron permease FTR1 family TM_0419 PF00528 Binding-protein-dependent transport system inner membrane component TM_0420 PF00528 Binding-protein-dependent transport system inner membrane component TM_0421 PF03459 TOBE domain TM_0421 PF17912 MalK OB fold domain TM_0421 PF00005 ABC transporter TM_0423 PF00465 Iron-containing alcohol dehydrogenase TM_0428 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TM_0429 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_0430 PF00528 Binding-protein-dependent transport system inner membrane component TM_0431 PF00528 Binding-protein-dependent transport system inner membrane component TM_0433 PF00544 Pectate lyase TM_0434 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM_0434 PF02056 Family 4 glycosyl hydrolase TM_0435 PF05448 Acetyl xylan esterase (AXE1) TM_0436 PF00107 Zinc-binding dehydrogenase TM_0436 PF08240 Alcohol dehydrogenase GroES-like domain TM_0437 PF00295 Glycosyl hydrolases family 28 TM_0438 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TM_0438 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TM_0439 PF07729 FCD domain TM_0439 PF00392 Bacterial regulatory proteins, gntR family TM_0443 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM_0443 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM_0444 PF10415 Fumarase C C-terminus TM_0444 PF00206 Lyase TM_0446 PF00731 AIR carboxylase TM_0447 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TM_0447 PF02222 ATP-grasp domain TM_0448 PF01103 Surface antigen TM_0448 PF07244 Surface antigen variable number repeat TM_0449 PF02511 Thymidylate synthase complementing protein TM_0451 PF00471 Ribosomal protein L33 TM_0452 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TM_0453 PF00467 KOW motif TM_0453 PF18298 NusG additional domain TM_0453 PF02357 Transcription termination factor nusG TM_0454 PF03946 Ribosomal protein L11, N-terminal domain TM_0454 PF00298 Ribosomal protein L11, RNA binding domain TM_0455 PF00687 Ribosomal protein L1p/L10e family TM_0456 PF00466 Ribosomal protein L10 TM_0457 PF00542 Ribosomal protein L7/L12 C-terminal domain TM_0457 PF16320 Ribosomal protein L7/L12 dimerisation domain TM_0458 PF04560 RNA polymerase Rpb2, domain 7 TM_0458 PF10385 RNA polymerase beta subunit external 1 domain TM_0458 PF04565 RNA polymerase Rpb2, domain 3 TM_0458 PF00562 RNA polymerase Rpb2, domain 6 TM_0458 PF04563 RNA polymerase beta subunit TM_0459 PF04997 RNA polymerase Rpb1, domain 1 TM_0459 PF00623 RNA polymerase Rpb1, domain 2 TM_0459 PF04983 RNA polymerase Rpb1, domain 3 TM_0459 PF04998 RNA polymerase Rpb1, domain 5 TM_0459 PF05000 RNA polymerase Rpb1, domain 4 TM_0460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_0461 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TM_0461 PF07733 Bacterial DNA polymerase III alpha NTPase domain TM_0461 PF14579 Helix-hairpin-helix motif TM_0462 PF00849 RNA pseudouridylate synthase TM_0462 PF01479 S4 domain TM_0463 PF01252 Signal peptidase (SPase) II TM_0464 PF01739 CheR methyltransferase, SAM binding domain TM_0464 PF03705 CheR methyltransferase, all-alpha domain TM_0466 PF01709 Transcriptional regulator TM_0468 PF00072 Response regulator receiver domain TM_0468 PF00486 Transcriptional regulatory protein, C terminal TM_0472 PF01174 SNO glutamine amidotransferase family TM_0473 PF01680 SOR/SNZ family TM_0475 PF00857 Isochorismatase family TM_0477 PF00395 S-layer homology domain TM_0478 PF01479 S4 domain TM_0478 PF00579 tRNA synthetases class I (W and Y) TM_0480 PF17760 UvrA interaction domain TM_0480 PF17755 UvrA DNA-binding domain TM_0480 PF00005 ABC transporter TM_0483 PF00005 ABC transporter TM_0485 PF00528 Binding-protein-dependent transport system inner membrane component TM_0486 PF01910 Thiamine-binding protein TM_0487 PF01883 Iron-sulfur cluster assembly protein TM_0488 PF05175 Methyltransferase small domain TM_0488 PF17827 PrmC N-terminal domain TM_0490 PF02146 Sir2 family TM_0492 PF00579 tRNA synthetases class I (W and Y) TM_0493 PF02616 Segregation and condensation protein ScpA TM_0494 PF04079 Segregation and condensation complex subunit ScpB TM_0495 PF13638 PIN domain TM_0495 PF02562 PhoH-like protein TM_0496 PF01336 OB-fold nucleic acid binding domain TM_0496 PF07733 Bacterial DNA polymerase III alpha NTPase domain TM_0496 PF00929 Exonuclease TM_0496 PF02811 PHP domain TM_0496 PF14579 Helix-hairpin-helix motif TM_0496 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TM_0496 PF11490 DNA polymerase III polC-type N-terminus II TM_0498 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0498 PF00005 ABC transporter TM_0500 PF00005 ABC transporter TM_0500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0501 PF00005 ABC transporter TM_0501 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0502 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_0502 PF00528 Binding-protein-dependent transport system inner membrane component TM_0503 PF00528 Binding-protein-dependent transport system inner membrane component TM_0505 PF00166 Chaperonin 10 Kd subunit TM_0506 PF00118 TCP-1/cpn60 chaperonin family TM_0508 PF16193 AAA C-terminal domain TM_0508 PF05496 Holliday junction DNA helicase RuvB P-loop domain TM_0508 PF01661 Macro domain TM_0508 PF12002 MgsA AAA+ ATPase C terminal TM_0509 PF16363 GDP-mannose 4,6 dehydratase TM_0511 PF03167 Uracil DNA glycosylase superfamily TM_0513 PF01078 Magnesium chelatase, subunit ChlI TM_0513 PF13335 Magnesium chelatase, subunit ChlI C-terminal TM_0514 PF04073 Aminoacyl-tRNA editing domain TM_0514 PF03129 Anticodon binding domain TM_0514 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM_0515 PF16199 Radical_SAM C-terminal domain TM_0515 PF04055 Radical SAM superfamily TM_0521 PF00227 Proteasome subunit TM_0522 PF10431 C-terminal, D2-small domain, of ClpB protein TM_0522 PF00004 ATPase family associated with various cellular activities (AAA) TM_0522 PF07724 AAA domain (Cdc48 subfamily) TM_0526 PF17209 Hfq protein TM_0527 PF13167 GTP-binding GTPase N-terminal TM_0527 PF16360 GTP-binding GTPase Middle Region TM_0527 PF01926 50S ribosome-binding GTPase TM_0528 PF02911 Formyl transferase, C-terminal domain TM_0528 PF00551 Formyl transferase TM_0529 PF00403 Heavy-metal-associated domain TM_0530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_0530 PF00005 ABC transporter TM_0531 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_0532 PF00528 Binding-protein-dependent transport system inner membrane component TM_0533 PF00528 Binding-protein-dependent transport system inner membrane component TM_0533 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_0534 PF03979 Sigma-70 factor, region 1.1 TM_0534 PF04545 Sigma-70, region 4 TM_0534 PF00140 Sigma-70 factor, region 1.2 TM_0534 PF04542 Sigma-70 region 2 TM_0534 PF04539 Sigma-70 region 3 TM_0537 PF13514 AAA domain TM_0538 PF01545 Cation efflux family TM_0539 PF00291 Pyridoxal-phosphate dependent enzyme TM_0541 PF05681 Fumarate hydratase (Fumerase) TM_0541 PF05683 Fumarase C-terminus TM_0542 PF03949 Malic enzyme, NAD binding domain TM_0542 PF00390 Malic enzyme, N-terminal domain TM_0544 PF00005 ABC transporter TM_0545 PF00288 GHMP kinases N terminal domain TM_0546 PF00291 Pyridoxal-phosphate dependent enzyme TM_0547 PF00696 Amino acid kinase family TM_0547 PF13840 ACT domain TM_0547 PF01842 ACT domain TM_0548 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM_0548 PF00205 Thiamine pyrophosphate enzyme, central domain TM_0548 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TM_0549 PF10369 Small subunit of acetolactate synthase TM_0550 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TM_0550 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TM_0551 PF00920 Dehydratase family TM_0552 PF00682 HMGL-like TM_0552 PF08502 LeuA allosteric (dimerisation) domain TM_0553 PF00682 HMGL-like TM_0553 PF08502 LeuA allosteric (dimerisation) domain TM_0554 PF00330 Aconitase family (aconitate hydratase) TM_0555 PF00694 Aconitase C-terminal domain TM_0556 PF00180 Isocitrate/isopropylmalate dehydrogenase TM_0557 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TM_0557 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TM_0557 PF02142 MGS-like domain TM_0558 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TM_0558 PF00117 Glutamine amidotransferase class-I TM_0561 PF01544 CorA-like Mg2+ transporter protein TM_0565 PF17746 SfsA N-terminal OB domain TM_0565 PF03749 Sugar fermentation stimulation protein RE domain TM_0567 PF02082 Transcriptional regulator TM_0570 PF02881 SRP54-type protein, helical bundle domain TM_0570 PF00448 SRP54-type protein, GTPase domain TM_0571 PF13180 PDZ domain TM_0571 PF17820 PDZ domain TM_0572 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TM_0573 PF00795 Carbon-nitrogen hydrolase TM_0574 PF02547 Queuosine biosynthesis protein TM_0575 PF02075 Crossover junction endodeoxyribonuclease RuvC TM_0576 PF02811 PHP domain TM_0576 PF14579 Helix-hairpin-helix motif TM_0576 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TM_0576 PF07733 Bacterial DNA polymerase III alpha NTPase domain TM_0576 PF00929 Exonuclease TM_0577 PF00583 Acetyltransferase (GNAT) family TM_0578 PF14748 Pyrroline-5-carboxylate reductase dimerisation TM_0578 PF03807 NADP oxidoreductase coenzyme F420-dependent TM_0579 PF11734 TilS substrate C-terminal domain TM_0579 PF01171 PP-loop family TM_0580 PF00004 ATPase family associated with various cellular activities (AAA) TM_0580 PF17862 AAA+ lid domain TM_0580 PF06480 FtsH Extracellular TM_0580 PF01434 Peptidase family M41 TM_0583 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TM_0583 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TM_0583 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TM_0585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TM_0585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TM_0586 PF00892 EamA-like transporter family TM_0587 PF07085 DRTGG domain TM_0587 PF00571 CBS domain TM_0587 PF02833 DHHA2 domain TM_0587 PF01368 DHH family TM_0590 PF03717 Penicillin-binding Protein dimerisation domain TM_0590 PF00905 Penicillin binding protein transpeptidase domain TM_0591 PF00005 ABC transporter TM_0594 PF00860 Permease family TM_0596 PF00528 Binding-protein-dependent transport system inner membrane component TM_0598 PF00528 Binding-protein-dependent transport system inner membrane component TM_0603 PF01250 Ribosomal protein S6 TM_0604 PF00436 Single-strand binding protein family TM_0605 PF01084 Ribosomal protein S18 TM_0607 PF00753 Metallo-beta-lactamase superfamily TM_0607 PF16123 Hydroxyacylglutathione hydrolase C-terminus TM_0610 PF02350 UDP-N-acetylglucosamine 2-epimerase TM_0618 PF13087 AAA domain TM_0618 PF13086 AAA domain TM_0618 PF13195 Protein of unknown function (DUF4011) TM_0618 PF13087 AAA domain TM_0618 PF13195 Protein of unknown function (DUF4011) TM_0618 PF13086 AAA domain TM_0619 PF13439 Glycosyltransferase Family 4 TM_0619 PF00534 Glycosyl transferases group 1 TM_0622 PF00534 Glycosyl transferases group 1 TM_0622 PF13439 Glycosyltransferase Family 4 TM_0624 PF13439 Glycosyltransferase Family 4 TM_0624 PF00534 Glycosyl transferases group 1 TM_0627 PF13439 Glycosyltransferase Family 4 TM_0627 PF00534 Glycosyl transferases group 1 TM_0630 PF16363 GDP-mannose 4,6 dehydratase TM_0631 PF13477 Glycosyl transferase 4-like TM_0631 PF00534 Glycosyl transferases group 1 TM_0632 PF02397 Bacterial sugar transferase TM_0633 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TM_0633 PF10135 Rod binding protein TM_0638 PF18412 Outer-membrane lipoprotein Wza C-terminal domain TM_0638 PF10531 SLBB domain TM_0638 PF02563 Polysaccharide biosynthesis/export protein TM_0640 PF13419 Haloacid dehalogenase-like hydrolase TM_0643 PF03415 Clostripain family TM_0645 PF02540 NAD synthase TM_0647 PF02542 YgbB family TM_0653 PF01938 TRAM domain TM_0653 PF00919 Uncharacterized protein family UPF0004 TM_0653 PF04055 Radical SAM superfamily TM_0654 PF17284 Spermidine synthase tetramerisation domain TM_0655 PF02675 S-adenosylmethionine decarboxylase TM_0656 PF01381 Helix-turn-helix TM_0657 PF02915 Rubrerythrin TM_0658 PF01880 Desulfoferrodoxin TM_0659 PF00301 Rubredoxin TM_0660 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase TM_0662 PF00550 Phosphopantetheine attachment site TM_0665 PF00291 Pyridoxal-phosphate dependent enzyme TM_0666 PF00132 Bacterial transferase hexapeptide (six repeats) TM_0667 PF01026 TatD related DNase TM_0668 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TM_0675 PF06289 Flagellar and Swarming motility proteins TM_0676 PF01618 MotA/TolQ/ExbB proton channel family TM_0677 PF13677 Membrane MotB of proton-channel complex MotA/MotB TM_0677 PF00691 OmpA family TM_0679 PF02154 Flagellar motor switch protein FliM TM_0679 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TM_0686 PF12169 DNA polymerase III subunits gamma and tau domain III TM_0687 PF02575 YbaB/EbfC DNA-binding family TM_0688 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TM_0688 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TM_0689 PF00162 Phosphoglycerate kinase TM_0689 PF00121 Triosephosphate isomerase TM_0692 PF01648 4'-phosphopantetheinyl transferase superfamily TM_0694 PF05697 Bacterial trigger factor protein (TF) TM_0694 PF05698 Bacterial trigger factor protein (TF) C-terminus TM_0695 PF00574 Clp protease TM_0698 PF00813 FliP family TM_0700 PF00072 Response regulator receiver domain TM_0701 PF01584 CheW-like domain TM_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_0702 PF07194 P2 response regulator binding domain TM_0702 PF01584 CheW-like domain TM_0702 PF01627 Hpt domain TM_0702 PF02895 Signal transducing histidine kinase, homodimeric domain TM_0703 PF00994 Probable molybdopterin binding domain TM_0703 PF18146 Damage-inducible protein CinA KH domain TM_0703 PF02464 Competence-damaged protein TM_0705 PF00005 ABC transporter TM_0707 PF02527 rRNA small subunit methyltransferase G TM_0708 PF03099 Biotin/lipoate A/B protein ligase family TM_0709 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TM_0715 PF01966 HD domain TM_0715 PF12627 Probable RNA and SrmB- binding site of polymerase A TM_0715 PF01743 Poly A polymerase head domain TM_0716 PF01039 Carboxyl transferase domain TM_0717 PF00364 Biotin-requiring enzyme TM_0718 PF01584 CheW-like domain TM_0719 PF01406 tRNA synthetases class I (C) catalytic domain TM_0719 PF09190 DALR domain TM_0720 PF00464 Serine hydroxymethyltransferase TM_0722 PF17876 Cold shock domain TM_0722 PF08206 Ribonuclease B OB domain TM_0722 PF00575 S1 RNA binding domain TM_0722 PF00773 RNB domain TM_0724 PF01699 Sodium/calcium exchanger protein TM_0726 PF01523 Putative modulator of DNA gyrase TM_0727 PF01523 Putative modulator of DNA gyrase TM_0729 PF13291 ACT domain TM_0729 PF04607 Region found in RelA / SpoT proteins TM_0729 PF02824 TGS domain TM_0730 PF02580 D-Tyr-tRNA(Tyr) deacylase TM_0731 PF02677 Epoxyqueuosine reductase QueH TM_0734 PF01134 Glucose inhibited division protein A TM_0736 PF01238 Phosphomannose isomerase type I TM_0739 PF01966 HD domain TM_0740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM_0740 PF03129 Anticodon binding domain TM_0740 PF02824 TGS domain TM_0740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM_0741 PF01467 Cytidylyltransferase-like TM_0742 PF00149 Calcineurin-like phosphoesterase TM_0744 PF00534 Glycosyl transferases group 1 TM_0744 PF13439 Glycosyltransferase Family 4 TM_0747 PF03572 Peptidase family S41 TM_0747 PF13180 PDZ domain TM_0751 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM_0751 PF02824 TGS domain TM_0751 PF03129 Anticodon binding domain TM_0751 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM_0752 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM_0752 PF02056 Family 4 glycosyl hydrolase TM_0753 PF01209 ubiE/COQ5 methyltransferase family TM_0754 PF04324 BFD-like [2Fe-2S] binding domain TM_0754 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TM_0754 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0754 PF18267 Rubredoxin NAD+ reductase C-terminal domain TM_0755 PF00753 Metallo-beta-lactamase superfamily TM_0755 PF00258 Flavodoxin TM_0756 PF00535 Glycosyl transferase family 2 TM_0757 PF00535 Glycosyl transferase family 2 TM_0757 PF13181 Tetratricopeptide repeat TM_0758 PF00669 Bacterial flagellin N-terminal helical region TM_0758 PF00700 Bacterial flagellin C-terminal helical region TM_0762 PF00318 Ribosomal protein S2 TM_0763 PF01906 Putative heavy-metal-binding TM_0765 PF00005 ABC transporter TM_0766 PF07702 UTRA domain TM_0766 PF00392 Bacterial regulatory proteins, gntR family TM_0767 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TM_0767 PF02806 Alpha amylase, C-terminal all-beta domain TM_0767 PF00128 Alpha amylase, catalytic domain TM_0768 PF01926 50S ribosome-binding GTPase TM_0769 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TM_0769 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TM_0769 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TM_0769 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TM_0770 PF00919 Uncharacterized protein family UPF0004 TM_0770 PF18693 TRAM domain TM_0770 PF04055 Radical SAM superfamily TM_0771 PF09115 DNA polymerase III, delta subunit, C terminal TM_0772 PF04468 PSP1 C-terminal conserved region TM_0773 PF11146 Protein of unknown function (DUF2905) TM_0775 PF00009 Elongation factor Tu GTP binding domain TM_0775 PF11987 Translation-initiation factor 2 TM_0775 PF04760 Translation initiation factor IF-2, N-terminal region TM_0780 PF00578 AhpC/TSA family TM_0785 PF04454 Encapsulating protein for peroxidase TM_0788 PF01964 Radical SAM ThiC family TM_0790 PF10120 Thiamine-phosphate synthase TM_0790 PF08543 Phosphomethylpyrimidine kinase TM_0791 PF14489 QueF-like protein TM_0792 PF02592 Putative vitamin uptake transporter TM_0793 PF00005 ABC transporter TM_0797 PF04029 2-phosphosulpholactate phosphatase TM_0798 PF00698 Acyl transferase domain TM_0799 PF02632 BioY family TM_0800 PF03060 Nitronate monooxygenase TM_0801 PF07977 FabA-like domain TM_0802 PF00109 Beta-ketoacyl synthase, N-terminal domain TM_0802 PF02801 Beta-ketoacyl synthase, C-terminal domain TM_0803 PF00117 Glutamine amidotransferase class-I TM_0803 PF06418 CTP synthase N-terminus TM_0804 PF02811 PHP domain TM_0805 PF00953 Glycosyl transferase family 4 TM_0807 PF00578 AhpC/TSA family TM_0807 PF10417 C-terminal domain of 1-Cys peroxiredoxin TM_0808 PF00480 ROK family TM_0809 PF00933 Glycosyl hydrolase family 3 N terminal domain TM_0810 PF01547 Bacterial extracellular solute-binding protein TM_0811 PF00528 Binding-protein-dependent transport system inner membrane component TM_0812 PF00528 Binding-protein-dependent transport system inner membrane component TM_0813 PF01380 SIS domain TM_0814 PF01979 Amidohydrolase family TM_0815 PF01554 MatE TM_0818 PF03808 Glycosyl transferase WecB/TagA/CpsF family TM_0819 PF00860 Permease family TM_0820 PF00465 Iron-containing alcohol dehydrogenase TM_0821 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TM_0821 PF01409 tRNA synthetases class II core domain (F) TM_0822 PF03147 Ferredoxin-fold anticodon binding domain TM_0822 PF03483 B3/4 domain TM_0822 PF03484 tRNA synthetase B5 domain TM_0822 PF01588 Putative tRNA binding domain TM_0822 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TM_0823 PF18665 Tetracyclin repressor-like, C-terminal domain TM_0823 PF00440 Bacterial regulatory proteins, tetR family TM_0825 PF04055 Radical SAM superfamily TM_0825 PF06463 Molybdenum Cofactor Synthesis C TM_0827 PF00005 ABC transporter TM_0827 PF08402 TOBE domain TM_0828 PF00294 pfkB family carbohydrate kinase TM_0830 PF00919 Uncharacterized protein family UPF0004 TM_0830 PF04055 Radical SAM superfamily TM_0831 PF01063 Amino-transferase class IV TM_0833 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_0833 PF01751 Toprim domain TM_0833 PF00204 DNA gyrase B TM_0833 PF00986 DNA gyrase B subunit, carboxyl terminus TM_0835 PF02491 SHS2 domain inserted in FTSA TM_0835 PF11983 Membrane-attachment and polymerisation-promoting switch TM_0836 PF12327 FtsZ family, C-terminal domain TM_0836 PF00091 Tubulin/FtsZ family, GTPase domain TM_0839 PF01098 Cell cycle protein TM_0842 PF00072 Response regulator receiver domain TM_0843 PF07837 Formiminotransferase domain, N-terminal subdomain TM_0843 PF02971 Formiminotransferase domain TM_0844 PF02590 Predicted SPOUT methyltransferase TM_0845 PF00571 CBS domain TM_0845 PF03471 Transporter associated domain TM_0846 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TM_0847 PF07650 KH domain TM_0847 PF01926 50S ribosome-binding GTPase TM_0848 PF01926 50S ribosome-binding GTPase TM_0849 PF00226 DnaJ domain TM_0849 PF01556 DnaJ C terminal domain TM_0849 PF00684 DnaJ central domain TM_0850 PF01025 GrpE TM_0851 PF01628 HrcA protein C terminal domain TM_0852 PF03481 Putative GTP-binding controlling metal-binding TM_0852 PF01300 Telomere recombination TM_0853 PF14827 Double sensory domain of two-component sensor kinase TM_0853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_0853 PF00512 His Kinase A (phospho-acceptor) domain TM_0853 PF13426 PAS domain TM_0853 PF00672 HAMP domain TM_0854 PF08668 HDOD domain TM_0855 PF02033 Ribosome-binding factor A TM_0856 PF01472 PUA domain TM_0856 PF16198 tRNA pseudouridylate synthase B C-terminal domain TM_0856 PF01509 TruB family pseudouridylate synthase (N terminal domain) TM_0857 PF06574 FAD synthetase TM_0857 PF01687 Riboflavin kinase TM_0859 PF02699 Preprotein translocase subunit TM_0860 PF02355 Protein export membrane protein TM_0860 PF07549 SecD/SecF GG Motif TM_0861 PF02355 Protein export membrane protein TM_0861 PF07549 SecD/SecF GG Motif TM_0862 PF00483 Nucleotidyl transferase TM_0863 PF03948 Ribosomal protein L9, C-terminal domain TM_0863 PF01281 Ribosomal protein L9, N-terminal domain TM_0864 PF12706 Beta-lactamase superfamily domain TM_0864 PF00753 Metallo-beta-lactamase superfamily TM_0866 PF01145 SPFH domain / Band 7 family TM_0868 PF13192 Thioredoxin domain TM_0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0869 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_0870 PF03793 PASTA domain TM_0870 PF00905 Penicillin binding protein transpeptidase domain TM_0870 PF03717 Penicillin-binding Protein dimerisation domain TM_0872 PF01795 MraW methylase family TM_0874 PF00814 Glycoprotease family TM_0876 PF01545 Cation efflux family TM_0876 PF16916 Dimerisation domain of Zinc Transporter TM_0877 PF03952 Enolase, N-terminal domain TM_0877 PF00113 Enolase, C-terminal TIM barrel domain TM_0878 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TM_0878 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TM_0878 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TM_0880 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TM_0881 PF04204 Homoserine O-succinyltransferase TM_0882 PF01053 Cys/Met metabolism PLP-dependent enzyme TM_0883 PF03309 Type III pantothenate kinase TM_0886 PF00912 Transglycosylase TM_0886 PF00905 Penicillin binding protein transpeptidase domain TM_0887 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TM_0887 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TM_0889 PF13288 DXP reductoisomerase C-terminal domain TM_0889 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TM_0889 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TM_0890 PF02163 Peptidase family M50 TM_0890 PF17820 PDZ domain TM_0891 PF04551 GcpE protein TM_0892 PF01769 Divalent cation transporter TM_0892 PF03448 MgtE intracellular N domain TM_0892 PF00571 CBS domain TM_0893 PF02673 Bacitracin resistance protein BacA TM_0895 PF08323 Starch synthase catalytic domain TM_0895 PF00534 Glycosyl transferases group 1 TM_0896 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TM_0896 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TM_0897 PF04232 Stage V sporulation protein S (SpoVS) TM_0902 PF04539 Sigma-70 region 3 TM_0902 PF04542 Sigma-70 region 2 TM_0902 PF04545 Sigma-70, region 4 TM_0903 PF03975 CheD chemotactic sensory transduction TM_0904 PF04509 CheC-like family TM_0906 PF10609 NUBPL iron-transfer P-loop NTPase TM_0907 PF00448 SRP54-type protein, GTPase domain TM_0908 PF00771 FHIPEP family TM_0909 PF01312 FlhB HrpN YscU SpaS Family TM_0910 PF01311 Bacterial export proteins, family 1 TM_0911 PF01008 Initiation factor 2 subunit family TM_0912 PF13145 PPIC-type PPIASE domain TM_0913 PF03819 MazG nucleotide pyrophosphohydrolase domain TM_0914 PF01865 Protein of unknown function DUF47 TM_0915 PF01351 Ribonuclease HII TM_0917 PF01384 Phosphate transporter family TM_0918 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_0920 PF00465 Iron-containing alcohol dehydrogenase TM_0922 PF01256 Carbohydrate kinase TM_0922 PF03853 YjeF-related protein N-terminus TM_0925 PF02390 Putative methyltransferase TM_0926 PF11638 DnaA N-terminal domain TM_0926 PF08299 Bacterial dnaA protein helix-turn-helix TM_0926 PF00308 Bacterial dnaA protein TM_0928 PF16236 Domain of unknown function (DUF4895) TM_0929 PF13203 Putative metallopeptidase domain TM_0929 PF09967 VWA-like domain (DUF2201) TM_0934 PF03600 Citrate transporter TM_0935 PF00478 IMP dehydrogenase / GMP reductase domain TM_0935 PF00571 CBS domain TM_0936 PF01979 Amidohydrolase family TM_0939 PF02261 Aspartate decarboxylase TM_0940 PF01479 S4 domain TM_0940 PF00849 RNA pseudouridylate synthase TM_0943 PF00120 Glutamine synthetase, catalytic domain TM_0943 PF03951 Glutamine synthetase, beta-Grasp domain TM_0949 PF00356 Bacterial regulatory proteins, lacI family TM_0952 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM_0952 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM_0953 PF02780 Transketolase, C-terminal domain TM_0953 PF02779 Transketolase, pyrimidine binding domain TM_0954 PF00456 Transketolase, thiamine diphosphate binding domain TM_0955 PF02653 Branched-chain amino acid transport system / permease component TM_0956 PF00005 ABC transporter TM_0958 PF13407 Periplasmic binding protein domain TM_0959 PF05025 RbsD / FucU transport protein family TM_0960 PF00294 pfkB family carbohydrate kinase TM_0961 PF04011 LemA family TM_0964 PF01969 Protein of unknown function DUF111 TM_0965 PF00731 AIR carboxylase TM_0966 PF02540 NAD synthase TM_0967 PF00589 Phage integrase family TM_0967 PF02899 Phage integrase, N-terminal SAM-like domain TM_0972 PF00990 Diguanylate cyclase, GGDEF domain TM_0973 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_0978 PF01206 Sulfurtransferase TusA TM_0982 PF04143 Sulphur transport TM_0983 PF01206 Sulfurtransferase TusA TM_0984 PF01835 MG2 domain TM_0984 PF07678 A-macroglobulin TED domain TM_0984 PF00207 Alpha-2-macroglobulin family TM_0984 PF07703 Alpha-2-macroglobulin bait region domain TM_0984 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TM_0986 PF06672 Protein of unknown function (DUF1175) TM_0990 PF00176 SNF2 family N-terminal domain TM_0990 PF00271 Helicase conserved C-terminal domain TM_1000 PF05168 HEPN domain TM_1005 PF06719 AraC-type transcriptional regulator N-terminus TM_1005 PF12833 Helix-turn-helix domain TM_1006 PF00248 Aldo/keto reductase family TM_1009 PF00248 Aldo/keto reductase family TM_1015 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TM_1015 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TM_1021 PF07690 Major Facilitator Superfamily TM_1022 PF12146 Serine aminopeptidase, S33 TM_1028 PF00005 ABC transporter TM_1028 PF13732 Domain of unknown function (DUF4162) TM_1031 PF00462 Glutaredoxin TM_1033 PF00483 Nucleotidyl transferase TM_1033 PF01050 Mannose-6-phosphate isomerase TM_1034 PF02350 UDP-N-acetylglucosamine 2-epimerase TM_1035 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TM_1035 PF01502 Phosphoribosyl-AMP cyclohydrolase TM_1036 PF00977 Histidine biosynthesis protein TM_1037 PF00977 Histidine biosynthesis protein TM_1038 PF00117 Glutamine amidotransferase class-I TM_1039 PF00475 Imidazoleglycerol-phosphate dehydratase TM_1040 PF00155 Aminotransferase class I and II TM_1041 PF00815 Histidinol dehydrogenase TM_1042 PF01634 ATP phosphoribosyltransferase TM_1043 PF13393 Histidyl-tRNA synthetase TM_1044 PF01385 Probable transposase TM_1044 PF07282 Putative transposase DNA-binding domain TM_1044 PF12323 Helix-turn-helix domain TM_1045 PF03600 Citrate transporter TM_1047 PF03775 Septum formation inhibitor MinC, C-terminal domain TM_1052 PF10531 SLBB domain TM_1054 PF00005 ABC transporter TM_1056 PF03091 CutA1 divalent ion tolerance protein TM_1057 PF07885 Ion channel TM_1057 PF02254 TrkA-N domain TM_1059 PF04232 Stage V sporulation protein S (SpoVS) TM_1062 PF00703 Glycosyl hydrolases family 2 TM_1062 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TM_1062 PF02837 Glycosyl hydrolases family 2, sugar binding domain TM_1063 PF00005 ABC transporter TM_1063 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1064 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1064 PF00005 ABC transporter TM_1065 PF00528 Binding-protein-dependent transport system inner membrane component TM_1065 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_1066 PF00528 Binding-protein-dependent transport system inner membrane component TM_1067 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_1068 PF02056 Family 4 glycosyl hydrolase TM_1068 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM_1069 PF00455 DeoR C terminal sensor domain TM_1069 PF08220 DeoR-like helix-turn-helix domain TM_1071 PF01261 Xylose isomerase-like TIM barrel TM_1073 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM_1073 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM_1077 PF02569 Pantoate-beta-alanine ligase TM_1080 PF02502 Ribose/Galactose Isomerase TM_1081 PF01740 STAS domain TM_1082 PF00717 Peptidase S24-like TM_1082 PF01726 LexA DNA binding domain TM_1083 PF01951 Archease protein family (MTH1598/TM1083) TM_1084 PF03989 DNA gyrase C-terminal domain, beta-propeller TM_1084 PF00521 DNA gyrase/topoisomerase IV, subunit A TM_1085 PF08264 Anticodon-binding domain of tRNA TM_1085 PF01588 Putative tRNA binding domain TM_1085 PF09334 tRNA synthetases class I (M) TM_1089 PF02386 Cation transport protein TM_1090 PF13393 Histidyl-tRNA synthetase TM_1090 PF03129 Anticodon binding domain TM_1093 PF03485 Arginyl tRNA synthetase N terminal domain TM_1093 PF05746 DALR anticodon binding domain TM_1093 PF00750 tRNA synthetases class I (R) TM_1094 PF05958 tRNA (Uracil-5-)-methyltransferase TM_1095 PF10397 Adenylosuccinate lyase C-terminus TM_1095 PF00206 Lyase TM_1096 PF00709 Adenylosuccinate synthetase TM_1097 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TM_1097 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TM_1099 PF02223 Thymidylate kinase TM_1101 PF12850 Calcineurin-like phosphoesterase superfamily domain TM_1102 PF00035 Double-stranded RNA binding motif TM_1102 PF14622 Ribonuclease-III-like TM_1120 PF13416 Bacterial extracellular solute-binding protein TM_1121 PF00528 Binding-protein-dependent transport system inner membrane component TM_1122 PF00528 Binding-protein-dependent transport system inner membrane component TM_1123 PF07196 Flagellin hook IN motif TM_1123 PF07195 Flagellar hook-associated protein 2 C-terminus TM_1123 PF02465 Flagellar hook-associated protein 2 N-terminus TM_1128 PF00210 Ferritin-like domain TM_1129 PF01048 Phosphorylase superfamily TM_1130 PF01515 Phosphate acetyl/butaryl transferase TM_1131 PF00155 Aminotransferase class I and II TM_1132 PF17863 AAA lid domain TM_1132 PF07726 ATPase family associated with various cellular activities (AAA) TM_1136 PF02653 Branched-chain amino acid transport system / permease component TM_1137 PF11862 Domain of unknown function (DUF3382) TM_1137 PF02653 Branched-chain amino acid transport system / permease component TM_1138 PF00005 ABC transporter TM_1138 PF12399 Branched-chain amino acid ATP-binding cassette transporter TM_1139 PF00005 ABC transporter TM_1140 PF00478 IMP dehydrogenase / GMP reductase domain TM_1140 PF00571 CBS domain TM_1141 PF02683 Cytochrome C biogenesis protein transmembrane region TM_1143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_1145 PF01966 HD domain TM_1146 PF00672 HAMP domain TM_1146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_1147 PF00072 Response regulator receiver domain TM_1147 PF01966 HD domain TM_1148 PF00180 Isocitrate/isopropylmalate dehydrogenase TM_1150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_1151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1151 PF00005 ABC transporter TM_1152 PF00005 ABC transporter TM_1152 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1153 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_1153 PF00528 Binding-protein-dependent transport system inner membrane component TM_1154 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TM_1155 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TM_1155 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TM_1156 PF04024 PspC domain TM_1158 PF00117 Glutamine amidotransferase class-I TM_1161 PF03448 MgtE intracellular N domain TM_1161 PF00571 CBS domain TM_1161 PF01769 Divalent cation transporter TM_1162 PF12706 Beta-lactamase superfamily domain TM_1163 PF00990 Diguanylate cyclase, GGDEF domain TM_1163 PF17155 Gammaproteobacterial periplasmic sensor domain TM_1165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM_1166 PF06969 HemN C-terminal domain TM_1166 PF04055 Radical SAM superfamily TM_1170 PF00072 Response regulator receiver domain TM_1172 PF03063 Prismane/CO dehydrogenase family TM_1177 PF13419 Haloacid dehalogenase-like hydrolase TM_1178 PF00583 Acetyltransferase (GNAT) family TM_1179 PF02561 Flagellar protein FliS TM_1181 PF00293 NUDIX domain TM_1182 PF02463 RecF/RecN/SMC N terminal domain TM_1182 PF06470 SMC proteins Flexible Hinge Domain TM_1183 PF00248 Aldo/keto reductase family TM_1184 PF00990 Diguanylate cyclase, GGDEF domain TM_1184 PF00563 EAL domain TM_1184 PF03707 Bacterial signalling protein N terminal repeat TM_1185 PF02142 MGS-like domain TM_1187 PF01594 AI-2E family transporter TM_1190 PF10509 Galactokinase galactose-binding signature TM_1190 PF08544 GHMP kinases C terminal TM_1190 PF00288 GHMP kinases N terminal domain TM_1191 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TM_1191 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TM_1193 PF16353 Domain of unknown function(DUF4981) TM_1193 PF00703 Glycosyl hydrolases family 2 TM_1193 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TM_1193 PF02837 Glycosyl hydrolases family 2, sugar binding domain TM_1193 PF02929 Beta galactosidase small chain TM_1194 PF00005 ABC transporter TM_1194 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1195 PF08532 Beta-galactosidase trimerisation domain TM_1195 PF08533 Beta-galactosidase C-terminal domain TM_1195 PF02449 Beta-galactosidase TM_1196 PF00005 ABC transporter TM_1196 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1197 PF00528 Binding-protein-dependent transport system inner membrane component TM_1197 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_1198 PF00528 Binding-protein-dependent transport system inner membrane component TM_1201 PF07745 Glycosyl hydrolase family 53 TM_1202 PF00528 Binding-protein-dependent transport system inner membrane component TM_1203 PF14785 Maltose transport system permease protein MalF P2 domain TM_1203 PF00528 Binding-protein-dependent transport system inner membrane component TM_1204 PF01547 Bacterial extracellular solute-binding protein TM_1205 PF01899 Na+/H+ ion antiporter subunit TM_1206 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TM_1209 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TM_1209 PF00361 Proton-conducting membrane transporter TM_1209 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TM_1209 PF13244 Domain of unknown function (DUF4040) TM_1210 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TM_1211 PF00361 Proton-conducting membrane transporter TM_1212 PF00361 Proton-conducting membrane transporter TM_1214 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TM_1215 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TM_1215 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TM_1216 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TM_1217 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_1217 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TM_1219 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1219 PF00005 ABC transporter TM_1220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1220 PF00005 ABC transporter TM_1221 PF00528 Binding-protein-dependent transport system inner membrane component TM_1221 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_1222 PF00528 Binding-protein-dependent transport system inner membrane component TM_1223 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_1224 PF00480 ROK family TM_1224 PF01325 Iron dependent repressor, N-terminal DNA binding domain TM_1225 PF04041 beta-1,4-mannooligosaccharide phosphorylase TM_1226 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_1228 PF01418 Helix-turn-helix domain, rpiR family TM_1228 PF01380 SIS domain TM_1229 PF00535 Glycosyl transferase family 2 TM_1230 PF00534 Glycosyl transferases group 1 TM_1231 PF01074 Glycosyl hydrolases family 38 N-terminal domain TM_1231 PF07748 Glycosyl hydrolases family 38 C-terminal domain TM_1231 PF09261 Alpha mannosidase middle domain TM_1232 PF08402 TOBE domain TM_1232 PF00005 ABC transporter TM_1233 PF00528 Binding-protein-dependent transport system inner membrane component TM_1234 PF00528 Binding-protein-dependent transport system inner membrane component TM_1238 PF00580 UvrD/REP helicase N-terminal domain TM_1238 PF13361 UvrD-like helicase C-terminal domain TM_1240 PF01926 50S ribosome-binding GTPase TM_1240 PF06071 Protein of unknown function (DUF933) TM_1243 PF01259 SAICAR synthetase TM_1244 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TM_1246 PF16904 Phosphoribosylformylglycinamidine synthase II C-terminus TM_1246 PF02769 AIR synthase related protein, C-terminal domain TM_1246 PF00586 AIR synthase related protein, N-terminal domain TM_1246 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TM_1247 PF00156 Phosphoribosyl transferase domain TM_1248 PF00551 Formyl transferase TM_1249 PF02142 MGS-like domain TM_1249 PF01808 AICARFT/IMPCHase bienzyme TM_1250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TM_1250 PF02843 Phosphoribosylglycinamide synthetase, C domain TM_1250 PF02844 Phosphoribosylglycinamide synthetase, N domain TM_1251 PF00586 AIR synthase related protein, N-terminal domain TM_1251 PF02769 AIR synthase related protein, C-terminal domain TM_1253 PF00795 Carbon-nitrogen hydrolase TM_1253 PF02540 NAD synthase TM_1254 PF13419 Haloacid dehalogenase-like hydrolase TM_1255 PF00155 Aminotransferase class I and II TM_1256 PF00005 ABC transporter TM_1256 PF00664 ABC transporter transmembrane region TM_1258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_1258 PF00512 His Kinase A (phospho-acceptor) domain TM_1259 PF00072 Response regulator receiver domain TM_1259 PF00486 Transcriptional regulatory protein, C terminal TM_1260 PF01895 PhoU domain TM_1261 PF00005 ABC transporter TM_1262 PF00528 Binding-protein-dependent transport system inner membrane component TM_1264 PF12849 PBP superfamily domain TM_1269 PF04055 Radical SAM superfamily TM_1269 PF06968 Biotin and Thiamin Synthesis associated domain TM_1270 PF01053 Cys/Met metabolism PLP-dependent enzyme TM_1271 PF00114 Pilin (bacterial filament) TM_1271 PF07963 Prokaryotic N-terminal methylation motif TM_1272 PF01425 Amidase TM_1273 PF02934 GatB/GatE catalytic domain TM_1273 PF02637 GatB domain TM_1276 PF03459 TOBE domain TM_1276 PF00005 ABC transporter TM_1276 PF17912 MalK OB fold domain TM_1277 PF02491 SHS2 domain inserted in FTSA TM_1278 PF00488 MutS domain V TM_1278 PF01713 Smr domain TM_1281 PF02056 Family 4 glycosyl hydrolase TM_1281 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM_1283 PF02660 Glycerol-3-phosphate acyltransferase TM_1284 PF00355 Rieske [2Fe-2S] domain TM_1286 PF08267 Cobalamin-independent synthase, N-terminal domain TM_1286 PF01717 Cobalamin-independent synthase, Catalytic domain TM_1287 PF07883 Cupin domain TM_1288 PF01926 50S ribosome-binding GTPase TM_1288 PF04055 Radical SAM superfamily TM_1288 PF01018 GTP1/OBG TM_1291 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TM_1292 PF10609 NUBPL iron-transfer P-loop NTPase TM_1293 PF01209 ubiE/COQ5 methyltransferase family TM_1295 PF16123 Hydroxyacylglutathione hydrolase C-terminus TM_1295 PF00753 Metallo-beta-lactamase superfamily TM_1297 PF00248 Aldo/keto reductase family TM_1302 PF00005 ABC transporter TM_1310 PF00664 ABC transporter transmembrane region TM_1310 PF00005 ABC transporter TM_1313 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TM_1314 PF00931 NB-ARC domain TM_1314 PF13176 Tetratricopeptide repeat TM_1319 PF00664 ABC transporter transmembrane region TM_1319 PF00005 ABC transporter TM_1321 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TM_1324 PF04055 Radical SAM superfamily TM_1324 PF13186 Iron-sulfur cluster-binding domain TM_1325 PF06463 Molybdenum Cofactor Synthesis C TM_1325 PF04055 Radical SAM superfamily TM_1327 PF00005 ABC transporter TM_1328 PF00664 ABC transporter transmembrane region TM_1328 PF00005 ABC transporter TM_1340 PF00355 Rieske [2Fe-2S] domain TM_1344 PF00312 Ribosomal protein S15 TM_1345 PF00013 KH domain TM_1345 PF01138 3' exoribonuclease family, domain 1 TM_1345 PF00575 S1 RNA binding domain TM_1345 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TM_1345 PF03725 3' exoribonuclease family, domain 2 TM_1346 PF00675 Insulinase (Peptidase family M16) TM_1346 PF05193 Peptidase M16 inactive domain TM_1347 PF00571 CBS domain TM_1347 PF00478 IMP dehydrogenase / GMP reductase domain TM_1349 PF01594 AI-2E family transporter TM_1350 PF12146 Serine aminopeptidase, S33 TM_1351 PF00749 tRNA synthetases class I (E and Q), catalytic domain TM_1354 PF00571 CBS domain TM_1354 PF00478 IMP dehydrogenase / GMP reductase domain TM_1357 PF01139 tRNA-splicing ligase RtcB TM_1359 PF00512 His Kinase A (phospho-acceptor) domain TM_1359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_1359 PF00989 PAS fold TM_1360 PF00486 Transcriptional regulatory protein, C terminal TM_1360 PF00072 Response regulator receiver domain TM_1361 PF08264 Anticodon-binding domain of tRNA TM_1361 PF06827 Zinc finger found in FPG and IleRS TM_1361 PF00133 tRNA synthetases class I (I, L, M and V) TM_1362 PF00437 Type II/IV secretion system protein TM_1363 PF00472 RF-1 domain TM_1363 PF03462 PCRF domain TM_1364 PF00460 Flagella basal body rod protein TM_1365 PF00460 Flagella basal body rod protein TM_1365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM_1366 PF02049 Flagellar hook-basal body complex protein FliE TM_1368 PF00005 ABC transporter TM_1369 PF01458 Uncharacterized protein family (UPF0051) TM_1370 PF01458 Uncharacterized protein family (UPF0051) TM_1371 PF00266 Aminotransferase class-V TM_1372 PF01592 NifU-like N terminal domain TM_1374 PF00300 Histidine phosphatase superfamily (branch 1) TM_1375 PF13416 Bacterial extracellular solute-binding protein TM_1376 PF00005 ABC transporter TM_1376 PF08402 TOBE domain TM_1377 PF00528 Binding-protein-dependent transport system inner membrane component TM_1378 PF00528 Binding-protein-dependent transport system inner membrane component TM_1379 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM_1379 PF02403 Seryl-tRNA synthetase N-terminal domain TM_1380 PF04452 RNA methyltransferase TM_1383 PF00288 GHMP kinases N terminal domain TM_1384 PF00156 Phosphoribosyl transferase domain TM_1385 PF00342 Phosphoglucose isomerase TM_1387 PF01121 Dephospho-CoA kinase TM_1391 PF02861 Clp amino terminal domain, pathogenicity island component TM_1391 PF17871 AAA lid domain TM_1391 PF07724 AAA domain (Cdc48 subfamily) TM_1391 PF00004 ATPase family associated with various cellular activities (AAA) TM_1391 PF10431 C-terminal, D2-small domain, of ClpB protein TM_1393 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TM_1394 PF01430 Hsp33 protein TM_1396 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM_1396 PF02272 DHHA1 domain TM_1396 PF01411 tRNA synthetases class II (A) TM_1398 PF01255 Putative undecaprenyl diphosphate synthase TM_1399 PF01765 Ribosome recycling factor TM_1400 PF00266 Aminotransferase class-V TM_1401 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TM_1401 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TM_1403 PF13732 Domain of unknown function (DUF4162) TM_1403 PF00005 ABC transporter TM_1404 PF01061 ABC-2 type transporter TM_1405 PF00534 Glycosyl transferases group 1 TM_1405 PF13439 Glycosyltransferase Family 4 TM_1410 PF03537 Glycoside-hydrolase family GH114 TM_1414 PF08244 Glycosyl hydrolases family 32 C terminal TM_1414 PF00251 Glycosyl hydrolases family 32 N-terminal domain TM_1415 PF00459 Inositol monophosphatase family TM_1416 PF01458 Uncharacterized protein family (UPF0051) TM_1417 PF00005 ABC transporter TM_1425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM_1425 PF00037 4Fe-4S binding domain TM_1425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TM_1426 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TM_1426 PF02906 Iron only hydrogenase large subunit, C-terminal domain TM_1426 PF02256 Iron hydrogenase small subunit TM_1426 PF00037 4Fe-4S binding domain TM_1427 PF06971 Putative DNA-binding protein N-terminus TM_1427 PF02629 CoA binding domain TM_1428 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM_1428 PF17200 Single Cache domain 2 TM_1428 PF00672 HAMP domain TM_1429 PF00230 Major intrinsic protein TM_1430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM_1430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM_1431 PF04309 Glycerol-3-phosphate responsive antiterminator TM_1432 PF04324 BFD-like [2Fe-2S] binding domain TM_1432 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_1433 PF04324 BFD-like [2Fe-2S] binding domain TM_1433 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_1437 PF00398 Ribosomal RNA adenine dimethylase TM_1440 PF03061 Thioesterase superfamily TM_1440 PF01008 Initiation factor 2 subunit family TM_1441 PF01336 OB-fold nucleic acid binding domain TM_1441 PF00152 tRNA synthetases class II (D, K and N) TM_1441 PF02938 GAD domain TM_1442 PF01740 STAS domain TM_1443 PF02224 Cytidylate kinase TM_1444 PF02401 LytB protein TM_1446 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TM_1446 PF01926 50S ribosome-binding GTPase TM_1447 PF02660 Glycerol-3-phosphate acyltransferase TM_1450 PF17757 UvrB interaction domain TM_1450 PF03461 TRCF domain TM_1450 PF02559 CarD-like/TRCF domain TM_1450 PF00271 Helicase conserved C-terminal domain TM_1450 PF00270 DEAD/DEAH box helicase TM_1451 PF04539 Sigma-70 region 3 TM_1451 PF04542 Sigma-70 region 2 TM_1451 PF00140 Sigma-70 factor, region 1.2 TM_1451 PF03979 Sigma-70 factor, region 1.1 TM_1451 PF04545 Sigma-70, region 4 TM_1452 PF08275 DNA primase catalytic core, N-terminal domain TM_1452 PF01807 CHC2 zinc finger TM_1453 PF00380 Ribosomal protein S9/S16 TM_1454 PF00572 Ribosomal protein L13 TM_1455 PF12822 ECF transporter, substrate-specific component TM_1456 PF01016 Ribosomal L27 protein TM_1458 PF00829 Ribosomal prokaryotic L21 protein TM_1461 PF02096 60Kd inner membrane protein TM_1462 PF01809 Putative membrane protein insertion efficiency factor TM_1463 PF00825 Ribonuclease P TM_1464 PF04227 Indigoidine synthase A like protein TM_1465 PF12557 Cob(I)alamin adenosyltransferase N terminal TM_1465 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TM_1466 PF01926 50S ribosome-binding GTPase TM_1467 PF01966 HD domain TM_1468 PF02645 Uncharacterised protein, DegV family COG1307 TM_1469 PF00480 ROK family TM_1470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM_1470 PF07498 Rho termination factor, N-terminal domain TM_1470 PF07497 Rho termination factor, RNA-binding domain TM_1471 PF01196 Ribosomal protein L17 TM_1472 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TM_1472 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TM_1472 PF01000 RNA polymerase Rpb3/RpoA insert domain TM_1473 PF01479 S4 domain TM_1473 PF00163 Ribosomal protein S4/S9 N-terminal domain TM_1474 PF00411 Ribosomal protein S11 TM_1475 PF00416 Ribosomal protein S13/S18 TM_1476 PF00444 Ribosomal protein L36 TM_1478 PF00557 Metallopeptidase family M24 TM_1479 PF05191 Adenylate kinase, active site lid TM_1480 PF00344 SecY translocase TM_1481 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TM_1482 PF00327 Ribosomal protein L30p/L7e TM_1483 PF03719 Ribosomal protein S5, C-terminal domain TM_1483 PF00333 Ribosomal protein S5, N-terminal domain TM_1484 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TM_1485 PF00347 Ribosomal protein L6 TM_1486 PF00410 Ribosomal protein S8 TM_1487 PF00253 Ribosomal protein S14p/S29e TM_1488 PF00673 ribosomal L5P family C-terminus TM_1488 PF00281 Ribosomal protein L5 TM_1489 PF00467 KOW motif TM_1489 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TM_1490 PF00238 Ribosomal protein L14p/L23e TM_1491 PF00366 Ribosomal protein S17 TM_1492 PF00831 Ribosomal L29 protein TM_1493 PF00252 Ribosomal protein L16p/L10e TM_1494 PF07650 KH domain TM_1494 PF00189 Ribosomal protein S3, C-terminal domain TM_1495 PF00237 Ribosomal protein L22p/L17e TM_1496 PF00203 Ribosomal protein S19 TM_1497 PF03947 Ribosomal Proteins L2, C-terminal domain TM_1497 PF00181 Ribosomal Proteins L2, RNA binding domain TM_1498 PF00276 Ribosomal protein L23 TM_1499 PF00573 Ribosomal protein L4/L1 family TM_1500 PF00297 Ribosomal protein L3 TM_1501 PF00338 Ribosomal protein S10p/S20e TM_1502 PF03143 Elongation factor Tu C-terminal domain TM_1502 PF03144 Elongation factor Tu domain 2 TM_1502 PF00009 Elongation factor Tu GTP binding domain TM_1503 PF00679 Elongation factor G C-terminus TM_1503 PF14492 Elongation Factor G, domain II TM_1503 PF00009 Elongation factor Tu GTP binding domain TM_1503 PF03144 Elongation factor Tu domain 2 TM_1503 PF03764 Elongation factor G, domain IV TM_1504 PF00177 Ribosomal protein S7p/S5e TM_1505 PF00164 Ribosomal protein S12/S23 TM_1507 PF02562 PhoH-like protein TM_1508 PF01966 HD domain TM_1508 PF07698 7TM receptor with intracellular HD hydrolase TM_1508 PF07697 7TM-HD extracellular TM_1509 PF02130 Uncharacterized protein family UPF0054 TM_1511 PF04298 Putative neutral zinc metallopeptidase TM_1512 PF01189 16S rRNA methyltransferase RsmB/F TM_1512 PF01029 NusB family TM_1513 PF05636 HIGH Nucleotidyl Transferase TM_1516 PF01546 Peptidase family M20/M25/M40 TM_1516 PF07687 Peptidase dimerisation domain TM_1517 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TM_1517 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TM_1518 PF01842 ACT domain TM_1518 PF13840 ACT domain TM_1518 PF00696 Amino acid kinase family TM_1519 PF14602 Hexapeptide repeat of succinyl-transferase TM_1519 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal TM_1519 PF00132 Bacterial transferase hexapeptide (six repeats) TM_1520 PF01113 Dihydrodipicolinate reductase, N-terminus TM_1520 PF05173 Dihydrodipicolinate reductase, C-terminus TM_1521 PF00701 Dihydrodipicolinate synthetase family TM_1522 PF01678 Diaminopimelate epimerase TM_1523 PF01118 Semialdehyde dehydrogenase, NAD binding domain TM_1523 PF02774 Semialdehyde dehydrogenase, dimerisation domain TM_1527 PF02082 Transcriptional regulator TM_1528 PF01040 UbiA prenyltransferase family TM_1530 PF01012 Electron transfer flavoprotein domain TM_1531 PF00766 Electron transfer flavoprotein FAD-binding domain TM_1531 PF01012 Electron transfer flavoprotein domain TM_1535 PF00348 Polyprenyl synthetase TM_1537 PF04055 Radical SAM superfamily TM_1537 PF02310 B12 binding domain TM_1539 PF02119 Flagellar P-ring protein TM_1540 PF02107 Flagellar L-ring protein TM_1542 PF00460 Flagella basal body rod protein TM_1542 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM_1543 PF00460 Flagella basal body rod protein TM_1543 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM_1545 PF03652 Holliday junction resolvase TM_1546 PF01368 DHH family TM_1546 PF02272 DHHA1 domain TM_1546 PF17768 RecJ OB domain TM_1546 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TM_1547 PF01966 HD domain TM_1548 PF02719 Polysaccharide biosynthesis protein TM_1549 PF00953 Glycosyl transferase family 4 TM_1550 PF07136 Protein of unknown function (DUF1385) TM_1551 PF01871 AMMECR1 TM_1553 PF02424 ApbE family TM_1556 PF02545 Maf-like protein TM_1557 PF04002 RadC-like JAB domain TM_1559 PF01791 DeoC/LacD family aldolase TM_1561 PF01702 Queuine tRNA-ribosyltransferase TM_1564 PF00708 Acylphosphatase TM_1565 PF00448 SRP54-type protein, GTPase domain TM_1565 PF02881 SRP54-type protein, helical bundle domain TM_1565 PF02978 Signal peptide binding domain TM_1566 PF00886 Ribosomal protein S16 TM_1568 PF01782 RimM N-terminal domain TM_1568 PF05239 PRC-barrel domain TM_1569 PF01746 tRNA (Guanine-1)-methyltransferase TM_1570 PF09936 SAM-dependent RNA methyltransferase TM_1571 PF01245 Ribosomal protein L19 TM_1572 PF10502 Signal peptidase, peptidase S26 TM_1574 PF01416 tRNA pseudouridine synthase TM_1576 PF01479 S4 domain TM_1576 PF01728 FtsJ-like methyltransferase TM_1578 PF07516 SecA Wing and Scaffold domain TM_1578 PF01043 SecA preprotein cross-linking domain TM_1578 PF00271 Helicase conserved C-terminal domain TM_1578 PF07517 SecA DEAD-like domain TM_1579 PF00472 RF-1 domain TM_1579 PF03462 PCRF domain TM_1580 PF02954 Bacterial regulatory protein, Fis family TM_1580 PF00072 Response regulator receiver domain TM_1580 PF00158 Sigma-54 interaction domain TM_1584 PF00156 Phosphoribosyl transferase domain TM_1585 PF13660 Domain of unknown function (DUF4147) TM_1585 PF05161 MOFRL family TM_1588 PF00990 Diguanylate cyclase, GGDEF domain TM_1590 PF00707 Translation initiation factor IF-3, C-terminal domain TM_1590 PF05198 Translation initiation factor IF-3, N-terminal domain TM_1591 PF01632 Ribosomal protein L35 TM_1592 PF00453 Ribosomal protein L20 TM_1593 PF10609 NUBPL iron-transfer P-loop NTPase TM_1594 PF00990 Diguanylate cyclase, GGDEF domain TM_1594 PF05230 MASE2 domain TM_1595 PF02272 DHHA1 domain TM_1595 PF01368 DHH family TM_1596 PF01048 Phosphorylase superfamily TM_1597 PF01168 Alanine racemase, N-terminal domain TM_1598 PF04542 Sigma-70 region 2 TM_1598 PF08281 Sigma-70, region 4 TM_1601 PF00919 Uncharacterized protein family UPF0004 TM_1601 PF04055 Radical SAM superfamily TM_1601 PF18693 TRAM domain TM_1602 PF02829 3H domain TM_1602 PF08279 HTH domain TM_1603 PF07690 Major Facilitator Superfamily TM_1604 PF00696 Amino acid kinase family TM_1605 PF00889 Elongation factor TS TM_1606 PF10150 Ribonuclease E/G family TM_1606 PF00575 S1 RNA binding domain TM_1607 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TM_1607 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TM_1608 PF02645 Uncharacterised protein, DegV family COG1307 TM_1609 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TM_1610 PF02874 ATP synthase alpha/beta family, beta-barrel domain TM_1610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM_1611 PF00231 ATP synthase TM_1612 PF02874 ATP synthase alpha/beta family, beta-barrel domain TM_1612 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM_1612 PF00306 ATP synthase alpha/beta chain, C terminal domain TM_1613 PF00213 ATP synthase delta (OSCP) subunit TM_1614 PF00430 ATP synthase B/B' CF(0) TM_1615 PF00137 ATP synthase subunit C TM_1616 PF00119 ATP synthase A chain TM_1618 PF13690 Chemotaxis phosphatase CheX TM_1619 PF01367 5'-3' exonuclease, C-terminal SAM fold TM_1619 PF00476 DNA polymerase family A TM_1619 PF01612 3'-5' exonuclease TM_1619 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TM_1620 PF02627 Carboxymuconolactone decarboxylase family TM_1621 PF03009 Glycerophosphoryl diester phosphodiesterase family TM_1623 PF00009 Elongation factor Tu GTP binding domain TM_1623 PF03144 Elongation factor Tu domain 2 TM_1623 PF06421 GTP-binding protein LepA C-terminus TM_1623 PF00679 Elongation factor G C-terminus TM_1624 PF02837 Glycosyl hydrolases family 2, sugar binding domain TM_1624 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TM_1624 PF16353 Domain of unknown function(DUF4981) TM_1624 PF02929 Beta galactosidase small chain TM_1624 PF00703 Glycosyl hydrolases family 2 TM_1626 PF01195 Peptidyl-tRNA hydrolase TM_1627 PF14693 Ribosomal protein TL5, C-terminal domain TM_1627 PF01386 Ribosomal L25p family TM_1628 PF14572 Phosphoribosyl synthetase-associated domain TM_1628 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TM_1629 PF00132 Bacterial transferase hexapeptide (six repeats) TM_1629 PF14602 Hexapeptide repeat of succinyl-transferase TM_1629 PF12804 MobA-like NTP transferase domain TM_1632 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TM_1633 PF02190 ATP-dependent protease La (LON) substrate-binding domain TM_1633 PF05362 Lon protease (S16) C-terminal proteolytic domain TM_1633 PF00004 ATPase family associated with various cellular activities (AAA) TM_1635 PF12320 Type 5 capsule protein repressor C-terminal domain TM_1635 PF00149 Calcineurin-like phosphoesterase TM_1636 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system TM_1638 PF00005 ABC transporter TM_1639 PF00175 Oxidoreductase NAD-binding domain TM_1639 PF00970 Oxidoreductase FAD-binding domain TM_1639 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TM_1640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TM_1640 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM_1641 PF00186 Dihydrofolate reductase TM_1642 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TM_1642 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TM_1642 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TM_1642 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TM_1643 PF03447 Homoserine dehydrogenase, NAD binding domain TM_1643 PF01958 Domain of unknown function DUF108 TM_1644 PF02445 Quinolinate synthetase A protein TM_1645 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TM_1645 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TM_1648 PF01966 HD domain TM_1650 PF00128 Alpha amylase, catalytic domain TM_1651 PF14492 Elongation Factor G, domain II TM_1651 PF03764 Elongation factor G, domain IV TM_1651 PF00009 Elongation factor Tu GTP binding domain TM_1651 PF00679 Elongation factor G C-terminus TM_1653 PF02885 Glycosyl transferase family, helical bundle domain TM_1653 PF00591 Glycosyl transferase family, a/b domain TM_1653 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TM_1654 PF00989 PAS fold TM_1654 PF00512 His Kinase A (phospho-acceptor) domain TM_1654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM_1654 PF16736 Single Cache-like TM_1655 PF00486 Transcriptional regulatory protein, C terminal TM_1655 PF00072 Response regulator receiver domain TM_1657 PF01649 Ribosomal protein S20 TM_1658 PF00438 S-adenosylmethionine synthetase, N-terminal domain TM_1658 PF02772 S-adenosylmethionine synthetase, central domain TM_1658 PF02773 S-adenosylmethionine synthetase, C-terminal domain TM_1661 PF01327 Polypeptide deformylase TM_1662 PF01975 Survival protein SurE TM_1663 PF00005 ABC transporter TM_1664 PF05175 Methyltransferase small domain TM_1666 PF07687 Peptidase dimerisation domain TM_1666 PF01546 Peptidase family M20/M25/M40 TM_1667 PF01261 Xylose isomerase-like TIM barrel TM_1672 PF01312 FlhB HrpN YscU SpaS Family TM_1678 PF11871 Domain of unknown function (DUF3391) TM_1678 PF01966 HD domain TM_1682 PF00072 Response regulator receiver domain TM_1683 PF00313 'Cold-shock' DNA-binding domain TM_1684 PF01197 Ribosomal protein L31 TM_1685 PF00013 KH domain TM_1685 PF00575 S1 RNA binding domain TM_1685 PF01138 3' exoribonuclease family, domain 1 TM_1685 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TM_1685 PF03725 3' exoribonuclease family, domain 2 TM_1686 PF01476 LysM domain TM_1686 PF03734 L,D-transpeptidase catalytic domain TM_1687 PF04127 DNA / pantothenate metabolism flavoprotein TM_1687 PF02441 Flavoprotein TM_1688 PF01192 RNA polymerase Rpb6 TM_1689 PF00625 Guanylate kinase TM_1690 PF04025 Domain of unknown function (DUF370) TM_1692 PF00266 Aminotransferase class-V TM_1694 PF02926 THUMP domain TM_1694 PF02568 Thiamine biosynthesis protein (ThiI) TM_1696 PF06750 Bacterial Peptidase A24 N-terminal domain TM_1696 PF01478 Type IV leader peptidase family TM_1697 PF17785 PUA-like domain TM_1697 PF10672 S-adenosylmethionine-dependent methyltransferase TM_1701 PF01554 MatE TM_1703 PF00884 Sulfatase TM_1705 PF01336 OB-fold nucleic acid binding domain TM_1705 PF00152 tRNA synthetases class II (D, K and N) TM_1706 PF01272 Transcription elongation factor, GreA/GreB, C-term TM_1706 PF03449 Transcription elongation factor, N-terminal TM_1707 PF03477 ATP cone domain TM_1708 PF02650 WhiA C-terminal HTH domain TM_1708 PF14527 WhiA LAGLIDADG-like domain TM_1709 PF01933 Uncharacterised protein family UPF0052 TM_1713 PF09186 Domain of unknown function (DUF1949) TM_1713 PF01205 Uncharacterized protein family UPF0029 TM_1714 PF01565 FAD binding domain TM_1714 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TM_1715 PF04055 Radical SAM superfamily TM_1717 PF16745 RsgA N-terminal domain TM_1717 PF03193 RsgA GTPase TM_1718 PF00834 Ribulose-phosphate 3 epimerase family TM_1719 PF05188 MutS domain II TM_1719 PF05192 MutS domain III TM_1719 PF05190 MutS family domain IV TM_1719 PF00488 MutS domain V TM_1719 PF01624 MutS domain I TM_1720 PF13673 Acetyltransferase (GNAT) domain TM_1723 PF01979 Amidohydrolase family TM_1726 PF02272 DHHA1 domain TM_1726 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM_1726 PF01411 tRNA synthetases class II (A) TM_1728 PF02548 Ketopantoate hydroxymethyltransferase TM_1730 PF17864 RuvB AAA lid domain TM_1730 PF05496 Holliday junction DNA helicase RuvB P-loop domain TM_1730 PF05491 RuvB C-terminal winged helix domain TM_1731 PF01168 Alanine racemase, N-terminal domain TM_1732 PF02325 YGGT family TM_1733 PF01513 ATP-NAD kinase TM_1734 PF01895 PhoU domain TM_1736 PF03796 DnaB-like helicase C terminal domain TM_1736 PF00772 DnaB-like helicase N terminal domain TM_1737 PF01048 Phosphorylase superfamily TM_1738 PF02535 ZIP Zinc transporter TM_1740 PF00636 Ribonuclease III domain TM_1741 PF00588 SpoU rRNA Methylase family TM_1741 PF08032 RNA 2'-O ribose methyltransferase substrate binding TM_1742 PF13344 Haloacid dehalogenase-like hydrolase TM_1743 PF00248 Aldo/keto reductase family TM_1744 PF01212 Beta-eliminating lyase TM_1746 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM_1747 PF00528 Binding-protein-dependent transport system inner membrane component TM_1748 PF00528 Binding-protein-dependent transport system inner membrane component TM_1748 PF12911 N-terminal TM domain of oligopeptide transport permease C TM_1749 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1749 PF00005 ABC transporter TM_1750 PF00005 ABC transporter TM_1750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM_1753 PF17757 UvrB interaction domain TM_1753 PF00271 Helicase conserved C-terminal domain TM_1753 PF12344 Ultra-violet resistance protein B TM_1753 PF04851 Type III restriction enzyme, res subunit TM_1753 PF02151 UvrB/uvrC motif TM_1754 PF00871 Acetokinase family TM_1755 PF01515 Phosphate acetyl/butaryl transferase TM_1756 PF00871 Acetokinase family TM_1761 PF04851 Type III restriction enzyme, res subunit TM_1761 PF00271 Helicase conserved C-terminal domain TM_1761 PF02151 UvrB/uvrC motif TM_1761 PF17757 UvrB interaction domain TM_1761 PF12344 Ultra-violet resistance protein B TM_1762 PF02780 Transketolase, C-terminal domain TM_1762 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TM_1762 PF02779 Transketolase, pyrimidine binding domain TM_1763 PF09285 Elongation factor P, C-terminal TM_1763 PF01132 Elongation factor P (EF-P) OB domain TM_1763 PF08207 Elongation factor P (EF-P) KOW-like domain TM_1765 PF01029 NusB family TM_1766 PF01268 Formate--tetrahydrofolate ligase TM_1767 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TM_1767 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TM_1768 PF02601 Exonuclease VII, large subunit TM_1768 PF13742 OB-fold nucleic acid binding domain TM_1769 PF02609 Exonuclease VII small subunit TM_1770 PF02779 Transketolase, pyrimidine binding domain TM_1770 PF02780 Transketolase, C-terminal domain TM_1770 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TM_1772 PF13684 Dihydroxyacetone kinase family TM_1772 PF02734 DAK2 domain TM_1774 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TM_1774 PF01676 Metalloenzyme superfamily TM_1776 PF01475 Ferric uptake regulator family TM_1777 PF13184 NusA-like KH domain TM_1777 PF08529 NusA N-terminal domain TM_1777 PF00575 S1 RNA binding domain TM_1778 PF02576 RimP N-terminal domain TM_1778 PF17384 RimP C-terminal SH3 domain TM_1780 PF00764 Arginosuccinate synthase TM_1782 PF02774 Semialdehyde dehydrogenase, dimerisation domain TM_1782 PF01118 Semialdehyde dehydrogenase, NAD binding domain TM_1783 PF01960 ArgJ family TM_1784 PF00696 Amino acid kinase family TM_1785 PF00202 Aminotransferase class-III TM_1788 PF00990 Diguanylate cyclase, GGDEF domain TM_1788 PF03707 Bacterial signalling protein N terminal repeat TM_1788 PF00563 EAL domain TM_1796 PF09827 CRISPR associated protein Cas2 TM_1797 PF01867 CRISPR associated protein Cas1 TM_1799 PF18395 Cas3 C-terminal domain TM_1799 PF00270 DEAD/DEAH box helicase TM_1799 PF18019 HD domain TM_1803 PF00684 DnaJ central domain TM_1803 PF01556 DnaJ C terminal domain TM_1803 PF00226 DnaJ domain TM_1807 PF03787 RAMP superfamily TM_1809 PF03787 RAMP superfamily TM_1811 PF18211 Csm1 subunit domain B TM_1817 PF08264 Anticodon-binding domain of tRNA TM_1817 PF00133 tRNA synthetases class I (I, L, M and V) TM_1817 PF10458 Valyl tRNA synthetase tRNA binding arm TM_1818 PF02417 Chromate transporter TM_1820 PF02568 Thiamine biosynthesis protein (ThiI) TM_1820 PF00117 Glutamine amidotransferase class-I TM_1820 PF00958 GMP synthase C terminal domain TM_1822 PF01145 SPFH domain / Band 7 family TM_1822 PF12221 Bacterial membrane protein N terminal TM_1823 PF01145 SPFH domain / Band 7 family TM_1825 PF00885 6,7-dimethyl-8-ribityllumazine synthase TM_1826 PF00925 GTP cyclohydrolase II TM_1826 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TM_1827 PF00677 Lumazine binding domain TM_1828 PF01872 RibD C-terminal domain TM_1828 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TM_1830 PF00990 Diguanylate cyclase, GGDEF domain TM_1830 PF08448 PAS fold TM_1833 PF00672 HAMP domain TM_1833 PF02743 Cache domain TM_1833 PF00211 Adenylate and Guanylate cyclase catalytic domain TM_1834 PF02056 Family 4 glycosyl hydrolase TM_1834 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM_1835 PF00128 Alpha amylase, catalytic domain TM_1836 PF00528 Binding-protein-dependent transport system inner membrane component TM_1839 PF01547 Bacterial extracellular solute-binding protein TM_1840 PF00128 Alpha amylase, catalytic domain TM_1845 PF00128 Alpha amylase, catalytic domain TM_1845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TM_1845 PF03714 Bacterial pullanase-associated domain TM_1847 PF01325 Iron dependent repressor, N-terminal DNA binding domain TM_1847 PF00480 ROK family TM_1848 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TM_1848 PF06165 Glycosyltransferase family 36 TM_1853 PF00528 Binding-protein-dependent transport system inner membrane component TM_1854 PF00528 Binding-protein-dependent transport system inner membrane component TM_1856 PF00356 Bacterial regulatory proteins, lacI family TM_1857 PF12072 Domain of unknown function (DUF3552) TM_1857 PF00013 KH domain TM_1857 PF01966 HD domain TM_1858 PF02631 RecX family TM_1859 PF00154 recA bacterial DNA recombination protein TM_1861 PF01066 CDP-alcohol phosphatidyltransferase TM_1862 PF00919 Uncharacterized protein family UPF0004 TM_1862 PF18693 TRAM domain TM_1862 PF04055 Radical SAM superfamily TM_1865 PF04493 Endonuclease V TM_1867 PF00056 lactate/malate dehydrogenase, NAD binding domain TM_1867 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TM_1868 PF02361 Cobalt transport protein TM_1869 PF13654 AAA domain TM_1869 PF05362 Lon protease (S16) C-terminal proteolytic domain TM_1870 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TM_1872 PF01894 Uncharacterised protein family UPF0047 TM_1873 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TM_1873 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TM_1874 PF00313 'Cold-shock' DNA-binding domain TM_1875 PF00749 tRNA synthetases class I (E and Q), catalytic domain TM_1876 PF12850 Calcineurin-like phosphoesterase superfamily domain TM_1878 PF00149 Calcineurin-like phosphoesterase TM_1878 PF02872 5'-nucleotidase, C-terminal domain