locus-tag class description THMA_0002 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain THMA_0002 PF13378 Enolase C-terminal domain-like THMA_0004 PF04199 Putative cyclase THMA_0006 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THMA_0006 PF00037 4Fe-4S binding domain THMA_0006 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THMA_0010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_0011 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THMA_0013 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THMA_0013 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THMA_0014 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMA_0016 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THMA_0017 PF02641 Uncharacterized ACR, COG1993 THMA_0018 PF08676 MutL C terminal dimerisation domain THMA_0018 PF01119 DNA mismatch repair protein, C-terminal domain THMA_0019 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_0020 PF00722 Glycosyl hydrolases family 16 THMA_0021 PF14310 Fibronectin type III-like domain THMA_0021 PF01915 Glycosyl hydrolase family 3 C-terminal domain THMA_0021 PF00933 Glycosyl hydrolase family 3 N terminal domain THMA_0023 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0023 PF00005 ABC transporter THMA_0024 PF00005 ABC transporter THMA_0024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0026 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0027 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_0028 PF00480 ROK family THMA_0032 PF03266 NTPase THMA_0033 PF01966 HD domain THMA_0034 PF01242 6-pyruvoyl tetrahydropterin synthase THMA_0035 PF02649 Type I GTP cyclohydrolase folE2 THMA_0036 PF00809 Pterin binding enzyme THMA_0037 PF02152 Dihydroneopterin aldolase THMA_0037 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THMA_0038 PF00557 Metallopeptidase family M24 THMA_0038 PF01321 Creatinase/Prolidase N-terminal domain THMA_0039 PF00005 ABC transporter THMA_0039 PF00664 ABC transporter transmembrane region THMA_0043 PF12323 Helix-turn-helix domain THMA_0043 PF01385 Probable transposase THMA_0043 PF07282 Putative transposase DNA-binding domain THMA_0045 PF04015 Domain of unknown function (DUF362) THMA_0047 PF04023 FeoA domain THMA_0047 PF07664 Ferrous iron transport protein B C terminus THMA_0047 PF17910 FeoB cytosolic helical domain THMA_0047 PF02421 Ferrous iron transport protein B THMA_0047 PF07670 Nucleoside recognition THMA_0051 PF07477 Glycosyl hydrolase family 67 C-terminus THMA_0051 PF03648 Glycosyl hydrolase family 67 N-terminus THMA_0051 PF07488 Glycosyl hydrolase family 67 middle domain THMA_0052 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_0053 PF00005 ABC transporter THMA_0053 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0054 PF00005 ABC transporter THMA_0054 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0055 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0055 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_0056 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0057 PF02018 Carbohydrate binding domain THMA_0057 PF00331 Glycosyl hydrolase family 10 THMA_0057 PF06452 Carbohydrate family 9 binding domain-like THMA_0060 PF02614 Glucuronate isomerase THMA_0061 PF09339 IclR helix-turn-helix domain THMA_0061 PF01614 Bacterial transcriptional regulator THMA_0062 PF01081 KDPG and KHG aldolase THMA_0064 PF08125 Mannitol dehydrogenase C-terminal domain THMA_0064 PF01232 Mannitol dehydrogenase Rossmann domain THMA_0065 PF03786 D-mannonate dehydratase (UxuA) THMA_0066 PF00331 Glycosyl hydrolase family 10 THMA_0067 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_0068 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0069 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_0069 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0070 PF00005 ABC transporter THMA_0070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0071 PF00005 ABC transporter THMA_0071 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0072 PF00933 Glycosyl hydrolase family 3 N terminal domain THMA_0072 PF14310 Fibronectin type III-like domain THMA_0072 PF01915 Glycosyl hydrolase family 3 C-terminal domain THMA_0073 PF05448 Acetyl xylan esterase (AXE1) THMA_0074 PF00005 ABC transporter THMA_0075 PF01032 FecCD transport family THMA_0076 PF01497 Periplasmic binding protein THMA_0077 PF02623 FliW protein THMA_0078 PF00669 Bacterial flagellin N-terminal helical region THMA_0079 PF07196 Flagellin hook IN motif THMA_0079 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMA_0082 PF03023 Lipid II flippase MurJ THMA_0083 PF01875 Memo-like protein THMA_0084 PF07660 Secretin and TonB N terminus short domain THMA_0084 PF03958 Bacterial type II/III secretion system short domain THMA_0084 PF00263 Bacterial type II and III secretion system protein THMA_0084 PF11741 AMIN domain THMA_0090 PF00482 Type II secretion system (T2SS), protein F THMA_0091 PF02915 Rubrerythrin THMA_0092 PF01207 Dihydrouridine synthase (Dus) THMA_0093 PF01467 Cytidylyltransferase-like THMA_0094 PF01018 GTP1/OBG THMA_0094 PF01926 50S ribosome-binding GTPase THMA_0094 PF09269 Domain of unknown function (DUF1967) THMA_0096 PF03120 NAD-dependent DNA ligase OB-fold domain THMA_0096 PF12826 Helix-hairpin-helix motif THMA_0096 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THMA_0096 PF00533 BRCA1 C Terminus (BRCT) domain THMA_0096 PF01653 NAD-dependent DNA ligase adenylation domain THMA_0104 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THMA_0106 PF01325 Iron dependent repressor, N-terminal DNA binding domain THMA_0106 PF00480 ROK family THMA_0107 PF00465 Iron-containing alcohol dehydrogenase THMA_0108 PF02653 Branched-chain amino acid transport system / permease component THMA_0109 PF01522 Polysaccharide deacetylase THMA_0111 PF00005 ABC transporter THMA_0112 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMA_0112 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THMA_0114 PF02867 Ribonucleotide reductase, barrel domain THMA_0114 PF00317 Ribonucleotide reductase, all-alpha domain THMA_0114 PF03477 ATP cone domain THMA_0116 PF00881 Nitroreductase family THMA_0119 PF01297 Zinc-uptake complex component A periplasmic THMA_0120 PF00005 ABC transporter THMA_0121 PF00950 ABC 3 transport family THMA_0122 PF00486 Transcriptional regulatory protein, C terminal THMA_0122 PF00072 Response regulator receiver domain THMA_0124 PF02436 Conserved carboxylase domain THMA_0124 PF00364 Biotin-requiring enzyme THMA_0124 PF00682 HMGL-like THMA_0126 PF07690 Major Facilitator Superfamily THMA_0127 PF00700 Bacterial flagellin C-terminal helical region THMA_0127 PF00669 Bacterial flagellin N-terminal helical region THMA_0128 PF00857 Isochorismatase family THMA_0129 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0131 PF04055 Radical SAM superfamily THMA_0132 PF00290 Tryptophan synthase alpha chain THMA_0133 PF00291 Pyridoxal-phosphate dependent enzyme THMA_0134 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase THMA_0135 PF00218 Indole-3-glycerol phosphate synthase THMA_0136 PF00117 Glutamine amidotransferase class-I THMA_0136 PF02885 Glycosyl transferase family, helical bundle domain THMA_0136 PF00591 Glycosyl transferase family, a/b domain THMA_0137 PF00425 chorismate binding enzyme THMA_0137 PF04715 Anthranilate synthase component I, N terminal region THMA_0138 PF00990 Diguanylate cyclase, GGDEF domain THMA_0138 PF00072 Response regulator receiver domain THMA_0141 PF00814 Glycoprotease family THMA_0142 PF10431 C-terminal, D2-small domain, of ClpB protein THMA_0142 PF06689 ClpX C4-type zinc finger THMA_0142 PF07724 AAA domain (Cdc48 subfamily) THMA_0144 PF01380 SIS domain THMA_0145 PF02504 Fatty acid synthesis protein THMA_0146 PF01783 Ribosomal L32p protein family THMA_0150 PF01817 Chorismate mutase type II THMA_0150 PF01842 ACT domain THMA_0150 PF00800 Prephenate dehydratase THMA_0151 PF00245 Alkaline phosphatase THMA_0154 PF01790 Prolipoprotein diacylglyceryl transferase THMA_0155 PF01725 Ham1 family THMA_0157 PF00348 Polyprenyl synthetase THMA_0161 PF01330 RuvA N terminal domain THMA_0161 PF07499 RuvA, C-terminal domain THMA_0162 PF02875 Mur ligase family, glutamate ligase domain THMA_0162 PF08245 Mur ligase middle domain THMA_0163 PF01676 Metalloenzyme superfamily THMA_0164 PF00133 tRNA synthetases class I (I, L, M and V) THMA_0164 PF09334 tRNA synthetases class I (M) THMA_0164 PF13603 Leucyl-tRNA synthetase, Domain 2 THMA_0164 PF08264 Anticodon-binding domain of tRNA THMA_0165 PF06971 Putative DNA-binding protein N-terminus THMA_0165 PF02629 CoA binding domain THMA_0168 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THMA_0168 PF05221 S-adenosyl-L-homocysteine hydrolase THMA_0169 PF17915 Reverse gyrase zinc finger THMA_0169 PF01131 DNA topoisomerase THMA_0169 PF00270 DEAD/DEAH box helicase THMA_0169 PF01751 Toprim domain THMA_0170 PF03030 Inorganic H+ pyrophosphatase THMA_0171 PF00550 Phosphopantetheine attachment site THMA_0173 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) THMA_0173 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 THMA_0174 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THMA_0174 PF18074 Primosomal protein N C-terminal domain THMA_0174 PF04851 Type III restriction enzyme, res subunit THMA_0174 PF17764 3′ DNA-binding domain (3′BD) THMA_0183 PF00919 Uncharacterized protein family UPF0004 THMA_0183 PF04055 Radical SAM superfamily THMA_0183 PF01938 TRAM domain THMA_0184 PF00795 Carbon-nitrogen hydrolase THMA_0184 PF02540 NAD synthase THMA_0185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THMA_0185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THMA_0185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THMA_0185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THMA_0187 PF00072 Response regulator receiver domain THMA_0187 PF01966 HD domain THMA_0188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_0188 PF00072 Response regulator receiver domain THMA_0188 PF00512 His Kinase A (phospho-acceptor) domain THMA_0188 PF09308 LuxQ, periplasmic THMA_0190 PF01980 tRNA-methyltransferase O THMA_0192 PF01032 FecCD transport family THMA_0193 PF00005 ABC transporter THMA_0194 PF04232 Stage V sporulation protein S (SpoVS) THMA_0199 PF03649 Uncharacterised protein family (UPF0014) THMA_0200 PF00005 ABC transporter THMA_0204 PF01171 PP-loop family THMA_0205 PF00004 ATPase family associated with various cellular activities (AAA) THMA_0205 PF07724 AAA domain (Cdc48 subfamily) THMA_0205 PF17871 AAA lid domain THMA_0205 PF02861 Clp amino terminal domain, pathogenicity island component THMA_0205 PF10431 C-terminal, D2-small domain, of ClpB protein THMA_0206 PF18073 Rubredoxin metal binding domain THMA_0207 PF00633 Helix-hairpin-helix motif THMA_0207 PF02457 DisA bacterial checkpoint controller nucleotide-binding THMA_0207 PF10635 DisA bacterial checkpoint controller linker region THMA_0208 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THMA_0208 PF02906 Iron only hydrogenase large subunit, C-terminal domain THMA_0208 PF02256 Iron hydrogenase small subunit THMA_0208 PF00037 4Fe-4S binding domain THMA_0211 PF00005 ABC transporter THMA_0212 PF00271 Helicase conserved C-terminal domain THMA_0212 PF00270 DEAD/DEAH box helicase THMA_0212 PF17191 RecG wedge domain THMA_0215 PF02887 Pyruvate kinase, alpha/beta domain THMA_0215 PF00224 Pyruvate kinase, barrel domain THMA_0216 PF00365 Phosphofructokinase THMA_0218 PF08669 Glycine cleavage T-protein C-terminal barrel domain THMA_0218 PF01571 Aminomethyltransferase folate-binding domain THMA_0219 PF01597 Glycine cleavage H-protein THMA_0220 PF02347 Glycine cleavage system P-protein THMA_0221 PF02347 Glycine cleavage system P-protein THMA_0222 PF01042 Endoribonuclease L-PSP THMA_0223 PF02091 Glycyl-tRNA synthetase alpha subunit THMA_0224 PF02092 Glycyl-tRNA synthetase beta subunit THMA_0224 PF05746 DALR anticodon binding domain THMA_0225 PF02874 ATP synthase alpha/beta family, beta-barrel domain THMA_0225 PF18269 T3SS EscN ATPase C-terminal domain THMA_0225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMA_0226 PF02108 Flagellar assembly protein FliH THMA_0227 PF01706 FliG C-terminal domain THMA_0227 PF14841 FliG middle domain THMA_0227 PF14842 FliG N-terminal domain THMA_0228 PF08345 Flagellar M-ring protein C-terminal THMA_0228 PF01514 Secretory protein of YscJ/FliF family THMA_0229 PF00005 ABC transporter THMA_0231 PF08279 HTH domain THMA_0231 PF02237 Biotin protein ligase C terminal domain THMA_0231 PF03099 Biotin/lipoate A/B protein ligase family THMA_0232 PF00291 Pyridoxal-phosphate dependent enzyme THMA_0235 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THMA_0235 PF00037 4Fe-4S binding domain THMA_0235 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THMA_0238 PF08245 Mur ligase middle domain THMA_0238 PF01225 Mur ligase family, catalytic domain THMA_0238 PF02875 Mur ligase family, glutamate ligase domain THMA_0239 PF03033 Glycosyltransferase family 28 N-terminal domain THMA_0239 PF04101 Glycosyltransferase family 28 C-terminal domain THMA_0240 PF01098 Cell cycle protein THMA_0241 PF08245 Mur ligase middle domain THMA_0242 PF00953 Glycosyl transferase family 4 THMA_0242 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 THMA_0243 PF02875 Mur ligase family, glutamate ligase domain THMA_0243 PF01225 Mur ligase family, catalytic domain THMA_0243 PF08245 Mur ligase middle domain THMA_0244 PF01225 Mur ligase family, catalytic domain THMA_0244 PF02875 Mur ligase family, glutamate ligase domain THMA_0244 PF08245 Mur ligase middle domain THMA_0246 PF00132 Bacterial transferase hexapeptide (six repeats) THMA_0246 PF00483 Nucleotidyl transferase THMA_0247 PF00483 Nucleotidyl transferase THMA_0247 PF00132 Bacterial transferase hexapeptide (six repeats) THMA_0250 PF04055 Radical SAM superfamily THMA_0250 PF06968 Biotin and Thiamin Synthesis associated domain THMA_0251 PF10531 SLBB domain THMA_0251 PF13375 RnfC Barrel sandwich hybrid domain THMA_0251 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THMA_0251 PF13237 4Fe-4S dicluster domain THMA_0252 PF03116 NQR2, RnfD, RnfE family THMA_0254 PF02508 Rnf-Nqr subunit, membrane protein THMA_0255 PF02508 Rnf-Nqr subunit, membrane protein THMA_0256 PF13187 4Fe-4S dicluster domain THMA_0256 PF04060 Putative Fe-S cluster THMA_0257 PF18255 DNA processing protein A sterile alpha motif domain THMA_0257 PF02481 DNA recombination-mediator protein A THMA_0258 PF02599 Global regulator protein family THMA_0259 PF02686 Glu-tRNAGln amidotransferase C subunit THMA_0260 PF02021 Uncharacterised protein family UPF0102 THMA_0261 PF01668 SmpB protein THMA_0262 PF00830 Ribosomal L28 family THMA_0264 PF01966 HD domain THMA_0264 PF01336 OB-fold nucleic acid binding domain THMA_0265 PF01131 DNA topoisomerase THMA_0265 PF01751 Toprim domain THMA_0266 PF01820 D-ala D-ala ligase N-terminus THMA_0266 PF07478 D-ala D-ala ligase C-terminus THMA_0268 PF01384 Phosphate transporter family THMA_0269 PF00712 DNA polymerase III beta subunit, N-terminal domain THMA_0269 PF02767 DNA polymerase III beta subunit, central domain THMA_0269 PF02768 DNA polymerase III beta subunit, C-terminal domain THMA_0270 PF01134 Glucose inhibited division protein A THMA_0270 PF13932 GidA associated domain THMA_0271 PF00849 RNA pseudouridylate synthase THMA_0271 PF01479 S4 domain THMA_0272 PF01541 GIY-YIG catalytic domain THMA_0272 PF08459 UvrC Helix-hairpin-helix N-terminal THMA_0272 PF02151 UvrB/uvrC motif THMA_0273 PF00216 Bacterial DNA-binding protein THMA_0274 PF01926 50S ribosome-binding GTPase THMA_0274 PF10396 GTP-binding protein TrmE N-terminus THMA_0274 PF12631 MnmE helical domain THMA_0275 PF02574 Homocysteine S-methyltransferase THMA_0275 PF02607 B12 binding domain THMA_0275 PF02965 Vitamin B12 dependent methionine synthase, activation domain THMA_0275 PF00809 Pterin binding enzyme THMA_0275 PF02310 B12 binding domain THMA_0277 PF02574 Homocysteine S-methyltransferase THMA_0277 PF02219 Methylenetetrahydrofolate reductase THMA_0279 PF00391 PEP-utilising enzyme, mobile domain THMA_0279 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THMA_0279 PF02896 PEP-utilising enzyme, TIM barrel domain THMA_0280 PF01116 Fructose-bisphosphate aldolase class-II THMA_0281 PF00871 Acetokinase family THMA_0282 PF00392 Bacterial regulatory proteins, gntR family THMA_0283 PF02610 L-arabinose isomerase THMA_0283 PF11762 L-arabinose isomerase C-terminal domain THMA_0285 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0286 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0288 PF06964 Alpha-L-arabinofuranosidase C-terminal domain THMA_0289 PF01263 Aldose 1-epimerase THMA_0290 PF00596 Class II Aldolase and Adducin N-terminal domain THMA_0291 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THMA_0291 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMA_0292 PF13685 Iron-containing alcohol dehydrogenase THMA_0294 PF00664 ABC transporter transmembrane region THMA_0294 PF00005 ABC transporter THMA_0295 PF00005 ABC transporter THMA_0295 PF00664 ABC transporter transmembrane region THMA_0296 PF00365 Phosphofructokinase THMA_0297 PF00285 Citrate synthase, C-terminal domain THMA_0298 PF00330 Aconitase family (aconitate hydratase) THMA_0299 PF00694 Aconitase C-terminal domain THMA_0300 PF00171 Aldehyde dehydrogenase family THMA_0301 PF01472 PUA domain THMA_0301 PF00696 Amino acid kinase family THMA_0302 PF00923 Transaldolase/Fructose-6-phosphate aldolase THMA_0303 PF00294 pfkB family carbohydrate kinase THMA_0305 PF08240 Alcohol dehydrogenase GroES-like domain THMA_0305 PF16912 Glucose dehydrogenase C-terminus THMA_0306 PF00356 Bacterial regulatory proteins, lacI family THMA_0308 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0309 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_0309 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0310 PF00005 ABC transporter THMA_0311 PF00005 ABC transporter THMA_0311 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0312 PF03442 Carbohydrate binding domain X2 THMA_0312 PF00942 Cellulose binding domain THMA_0315 PF01055 Glycosyl hydrolases family 31 THMA_0315 PF13802 Galactose mutarotase-like THMA_0316 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_0317 PF02449 Beta-galactosidase THMA_0317 PF08533 Beta-galactosidase C-terminal domain THMA_0317 PF08532 Beta-galactosidase trimerisation domain THMA_0319 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THMA_0319 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THMA_0320 PF00248 Aldo/keto reductase family THMA_0324 PF00403 Heavy-metal-associated domain THMA_0325 PF01209 ubiE/COQ5 methyltransferase family THMA_0329 PF03480 Bacterial extracellular solute-binding protein, family 7 THMA_0331 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component THMA_0333 PF01380 SIS domain THMA_0333 PF01418 Helix-turn-helix domain, rpiR family THMA_0334 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THMA_0334 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THMA_0336 PF01555 DNA methylase THMA_0338 PF07969 Amidohydrolase family THMA_0339 PF00156 Phosphoribosyl transferase domain THMA_0340 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THMA_0341 PF01180 Dihydroorotate dehydrogenase THMA_0342 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THMA_0344 PF13026 Protein of unknown function (DUF3887) THMA_0344 PF12146 Serine aminopeptidase, S33 THMA_0345 PF04055 Radical SAM superfamily THMA_0345 PF08497 Radical SAM N-terminal THMA_0351 PF00793 DAHP synthetase I family THMA_0351 PF18152 DAHP synthase ferredoxin-like domain THMA_0353 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THMA_0354 PF08501 Shikimate dehydrogenase substrate binding domain THMA_0354 PF01488 Shikimate / quinate 5-dehydrogenase THMA_0355 PF01264 Chorismate synthase THMA_0356 PF01761 3-dehydroquinate synthase THMA_0356 PF01202 Shikimate kinase THMA_0357 PF01220 Dehydroquinase class II THMA_0359 PF12704 MacB-like periplasmic core domain THMA_0359 PF02687 FtsX-like permease family THMA_0359 PF00005 ABC transporter THMA_0360 PF00005 ABC transporter THMA_0361 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMA_0364 PF13291 ACT domain THMA_0364 PF00291 Pyridoxal-phosphate dependent enzyme THMA_0366 PF00781 Diacylglycerol kinase catalytic domain THMA_0368 PF03819 MazG nucleotide pyrophosphohydrolase domain THMA_0370 PF01261 Xylose isomerase-like TIM barrel THMA_0371 PF05670 NFACT protein RNA binding domain THMA_0372 PF00128 Alpha amylase, catalytic domain THMA_0372 PF09178 Domain of unknown function (DUF1945) THMA_0373 PF02127 Aminopeptidase I zinc metalloprotease (M18) THMA_0374 PF10576 Iron-sulfur binding domain of endonuclease III THMA_0374 PF00633 Helix-hairpin-helix motif THMA_0374 PF00730 HhH-GPD superfamily base excision DNA repair protein THMA_0378 PF06745 KaiC THMA_0379 PF01316 Arginine repressor, DNA binding domain THMA_0379 PF02863 Arginine repressor, C-terminal domain THMA_0380 PF00873 AcrB/AcrD/AcrF family THMA_0381 PF00012 Hsp70 protein THMA_0382 PF00011 Hsp20/alpha crystallin family THMA_0383 PF06130 Phosphate propanoyltransferase THMA_0384 PF01925 Sulfite exporter TauE/SafE THMA_0385 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THMA_0385 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THMA_0386 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0386 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THMA_0388 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0388 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THMA_0389 PF00730 HhH-GPD superfamily base excision DNA repair protein THMA_0389 PF14815 NUDIX domain THMA_0389 PF00633 Helix-hairpin-helix motif THMA_0390 PF00881 Nitroreductase family THMA_0392 PF03477 ATP cone domain THMA_0392 PF13597 Anaerobic ribonucleoside-triphosphate reductase THMA_0393 PF00881 Nitroreductase family THMA_0396 PF00005 ABC transporter THMA_0397 PF00534 Glycosyl transferases group 1 THMA_0401 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0401 PF13247 4Fe-4S dicluster domain THMA_0401 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THMA_0402 PF01645 Conserved region in glutamate synthase THMA_0402 PF13187 4Fe-4S dicluster domain THMA_0403 PF00310 Glutamine amidotransferases class-II THMA_0405 PF00072 Response regulator receiver domain THMA_0405 PF00486 Transcriptional regulatory protein, C terminal THMA_0406 PF00672 HAMP domain THMA_0406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_0406 PF00512 His Kinase A (phospho-acceptor) domain THMA_0407 PF00265 Thymidine kinase THMA_0408 PF00909 Ammonium Transporter Family THMA_0409 PF00543 Nitrogen regulatory protein P-II THMA_0411 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMA_0414 PF00072 Response regulator receiver domain THMA_0414 PF01339 CheB methylesterase THMA_0415 PF04225 Opacity-associated protein A LysM-like domain THMA_0415 PF01551 Peptidase family M23 THMA_0417 PF01047 MarR family THMA_0417 PF00480 ROK family THMA_0418 PF00107 Zinc-binding dehydrogenase THMA_0418 PF08240 Alcohol dehydrogenase GroES-like domain THMA_0419 PF02633 Creatinine amidohydrolase THMA_0420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THMA_0420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THMA_0422 PF01261 Xylose isomerase-like TIM barrel THMA_0423 PF03239 Iron permease FTR1 family THMA_0425 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0426 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0427 PF00005 ABC transporter THMA_0427 PF17912 MalK OB fold domain THMA_0427 PF03459 TOBE domain THMA_0429 PF00465 Iron-containing alcohol dehydrogenase THMA_0434 PF00724 NADH:flavin oxidoreductase / NADH oxidase family THMA_0435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_0436 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0437 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0439 PF00544 Pectate lyase THMA_0440 PF02056 Family 4 glycosyl hydrolase THMA_0440 PF11975 Family 4 glycosyl hydrolase C-terminal domain THMA_0442 PF08240 Alcohol dehydrogenase GroES-like domain THMA_0442 PF00107 Zinc-binding dehydrogenase THMA_0443 PF00295 Glycosyl hydrolases family 28 THMA_0444 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THMA_0444 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THMA_0445 PF07729 FCD domain THMA_0445 PF00392 Bacterial regulatory proteins, gntR family THMA_0449 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THMA_0449 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMA_0450 PF10415 Fumarase C C-terminus THMA_0450 PF00206 Lyase THMA_0451 PF01926 50S ribosome-binding GTPase THMA_0451 PF12631 MnmE helical domain THMA_0451 PF10396 GTP-binding protein TrmE N-terminus THMA_0452 PF00731 AIR carboxylase THMA_0453 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain THMA_0453 PF02222 ATP-grasp domain THMA_0454 PF01103 Surface antigen THMA_0454 PF07244 Surface antigen variable number repeat THMA_0455 PF02511 Thymidylate synthase complementing protein THMA_0460 PF00471 Ribosomal protein L33 THMA_0462 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THMA_0463 PF18298 NusG additional domain THMA_0463 PF02357 Transcription termination factor nusG THMA_0463 PF00467 KOW motif THMA_0464 PF03946 Ribosomal protein L11, N-terminal domain THMA_0464 PF00298 Ribosomal protein L11, RNA binding domain THMA_0465 PF00687 Ribosomal protein L1p/L10e family THMA_0466 PF00466 Ribosomal protein L10 THMA_0467 PF00542 Ribosomal protein L7/L12 C-terminal domain THMA_0467 PF16320 Ribosomal protein L7/L12 dimerisation domain THMA_0468 PF04565 RNA polymerase Rpb2, domain 3 THMA_0468 PF10385 RNA polymerase beta subunit external 1 domain THMA_0468 PF00562 RNA polymerase Rpb2, domain 6 THMA_0468 PF04560 RNA polymerase Rpb2, domain 7 THMA_0468 PF04563 RNA polymerase beta subunit THMA_0469 PF04998 RNA polymerase Rpb1, domain 5 THMA_0469 PF04997 RNA polymerase Rpb1, domain 1 THMA_0469 PF00623 RNA polymerase Rpb1, domain 2 THMA_0469 PF04983 RNA polymerase Rpb1, domain 3 THMA_0469 PF05000 RNA polymerase Rpb1, domain 4 THMA_0470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_0471 PF14579 Helix-hairpin-helix motif THMA_0471 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THMA_0471 PF07733 Bacterial DNA polymerase III alpha NTPase domain THMA_0472 PF01479 S4 domain THMA_0472 PF00849 RNA pseudouridylate synthase THMA_0473 PF03705 CheR methyltransferase, all-alpha domain THMA_0473 PF01739 CheR methyltransferase, SAM binding domain THMA_0475 PF01709 Transcriptional regulator THMA_0477 PF00486 Transcriptional regulatory protein, C terminal THMA_0477 PF00072 Response regulator receiver domain THMA_0481 PF01174 SNO glutamine amidotransferase family THMA_0482 PF01680 SOR/SNZ family THMA_0484 PF00857 Isochorismatase family THMA_0487 PF00395 S-layer homology domain THMA_0488 PF00579 tRNA synthetases class I (W and Y) THMA_0488 PF01479 S4 domain THMA_0490 PF17755 UvrA DNA-binding domain THMA_0490 PF17760 UvrA interaction domain THMA_0490 PF00005 ABC transporter THMA_0496 PF00005 ABC transporter THMA_0498 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0499 PF01910 Thiamine-binding protein THMA_0500 PF01883 Iron-sulfur cluster assembly protein THMA_0501 PF17827 PrmC N-terminal domain THMA_0501 PF05175 Methyltransferase small domain THMA_0503 PF02146 Sir2 family THMA_0505 PF00579 tRNA synthetases class I (W and Y) THMA_0506 PF02616 Segregation and condensation protein ScpA THMA_0507 PF04079 Segregation and condensation complex subunit ScpB THMA_0508 PF02562 PhoH-like protein THMA_0508 PF13638 PIN domain THMA_0509 PF11490 DNA polymerase III polC-type N-terminus II THMA_0509 PF07733 Bacterial DNA polymerase III alpha NTPase domain THMA_0509 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THMA_0509 PF14579 Helix-hairpin-helix motif THMA_0509 PF02811 PHP domain THMA_0509 PF00929 Exonuclease THMA_0509 PF01336 OB-fold nucleic acid binding domain THMA_0511 PF00005 ABC transporter THMA_0511 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0513 PF00005 ABC transporter THMA_0513 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0514 PF00005 ABC transporter THMA_0514 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0515 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0515 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_0516 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0517 PF00166 Chaperonin 10 Kd subunit THMA_0518 PF00118 TCP-1/cpn60 chaperonin family THMA_0520 PF05496 Holliday junction DNA helicase RuvB P-loop domain THMA_0520 PF16193 AAA C-terminal domain THMA_0520 PF01661 Macro domain THMA_0520 PF12002 MgsA AAA+ ATPase C terminal THMA_0521 PF16363 GDP-mannose 4,6 dehydratase THMA_0523 PF03167 Uracil DNA glycosylase superfamily THMA_0525 PF13335 Magnesium chelatase, subunit ChlI C-terminal THMA_0525 PF01078 Magnesium chelatase, subunit ChlI THMA_0526 PF04073 Aminoacyl-tRNA editing domain THMA_0526 PF03129 Anticodon binding domain THMA_0526 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THMA_0527 PF16199 Radical_SAM C-terminal domain THMA_0527 PF04055 Radical SAM superfamily THMA_0533 PF00227 Proteasome subunit THMA_0534 PF10431 C-terminal, D2-small domain, of ClpB protein THMA_0534 PF07724 AAA domain (Cdc48 subfamily) THMA_0534 PF00004 ATPase family associated with various cellular activities (AAA) THMA_0539 PF17209 Hfq protein THMA_0540 PF13167 GTP-binding GTPase N-terminal THMA_0540 PF16360 GTP-binding GTPase Middle Region THMA_0540 PF01926 50S ribosome-binding GTPase THMA_0541 PF02911 Formyl transferase, C-terminal domain THMA_0541 PF00551 Formyl transferase THMA_0542 PF00403 Heavy-metal-associated domain THMA_0543 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_0543 PF00005 ABC transporter THMA_0544 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_0545 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0546 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_0546 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0547 PF04542 Sigma-70 region 2 THMA_0547 PF04539 Sigma-70 region 3 THMA_0547 PF04545 Sigma-70, region 4 THMA_0547 PF03979 Sigma-70 factor, region 1.1 THMA_0547 PF00140 Sigma-70 factor, region 1.2 THMA_0550 PF13514 AAA domain THMA_0551 PF01545 Cation efflux family THMA_0552 PF00291 Pyridoxal-phosphate dependent enzyme THMA_0554 PF05681 Fumarate hydratase (Fumerase) THMA_0554 PF05683 Fumarase C-terminus THMA_0555 PF03949 Malic enzyme, NAD binding domain THMA_0555 PF00390 Malic enzyme, N-terminal domain THMA_0557 PF00005 ABC transporter THMA_0558 PF00288 GHMP kinases N terminal domain THMA_0559 PF00291 Pyridoxal-phosphate dependent enzyme THMA_0560 PF00696 Amino acid kinase family THMA_0560 PF01842 ACT domain THMA_0560 PF13840 ACT domain THMA_0561 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMA_0561 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THMA_0561 PF00205 Thiamine pyrophosphate enzyme, central domain THMA_0562 PF10369 Small subunit of acetolactate synthase THMA_0563 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain THMA_0563 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THMA_0564 PF00920 Dehydratase family THMA_0565 PF08502 LeuA allosteric (dimerisation) domain THMA_0565 PF00682 HMGL-like THMA_0566 PF00682 HMGL-like THMA_0566 PF08502 LeuA allosteric (dimerisation) domain THMA_0567 PF00330 Aconitase family (aconitate hydratase) THMA_0568 PF00694 Aconitase C-terminal domain THMA_0569 PF00180 Isocitrate/isopropylmalate dehydrogenase THMA_0570 PF02142 MGS-like domain THMA_0570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THMA_0570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THMA_0571 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THMA_0571 PF00117 Glutamine amidotransferase class-I THMA_0574 PF01544 CorA-like Mg2+ transporter protein THMA_0579 PF03749 Sugar fermentation stimulation protein RE domain THMA_0579 PF17746 SfsA N-terminal OB domain THMA_0581 PF02082 Transcriptional regulator THMA_0584 PF02881 SRP54-type protein, helical bundle domain THMA_0584 PF00448 SRP54-type protein, GTPase domain THMA_0585 PF13180 PDZ domain THMA_0585 PF17820 PDZ domain THMA_0586 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THMA_0587 PF00795 Carbon-nitrogen hydrolase THMA_0588 PF02547 Queuosine biosynthesis protein THMA_0589 PF02075 Crossover junction endodeoxyribonuclease RuvC THMA_0590 PF00929 Exonuclease THMA_0590 PF02811 PHP domain THMA_0590 PF07733 Bacterial DNA polymerase III alpha NTPase domain THMA_0590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THMA_0590 PF14579 Helix-hairpin-helix motif THMA_0591 PF00583 Acetyltransferase (GNAT) family THMA_0592 PF03807 NADP oxidoreductase coenzyme F420-dependent THMA_0592 PF14748 Pyrroline-5-carboxylate reductase dimerisation THMA_0594 PF01171 PP-loop family THMA_0594 PF11734 TilS substrate C-terminal domain THMA_0595 PF00004 ATPase family associated with various cellular activities (AAA) THMA_0595 PF17862 AAA+ lid domain THMA_0595 PF06480 FtsH Extracellular THMA_0595 PF01434 Peptidase family M41 THMA_0598 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THMA_0598 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THMA_0598 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THMA_0600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THMA_0600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THMA_0601 PF00892 EamA-like transporter family THMA_0602 PF07085 DRTGG domain THMA_0602 PF02833 DHHA2 domain THMA_0602 PF01368 DHH family THMA_0602 PF00571 CBS domain THMA_0606 PF00905 Penicillin binding protein transpeptidase domain THMA_0606 PF03717 Penicillin-binding Protein dimerisation domain THMA_0607 PF00005 ABC transporter THMA_0610 PF00860 Permease family THMA_0612 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0614 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0619 PF01250 Ribosomal protein S6 THMA_0620 PF00436 Single-strand binding protein family THMA_0621 PF01084 Ribosomal protein S18 THMA_0623 PF16123 Hydroxyacylglutathione hydrolase C-terminus THMA_0623 PF00753 Metallo-beta-lactamase superfamily THMA_0626 PF02350 UDP-N-acetylglucosamine 2-epimerase THMA_0634 PF13086 AAA domain THMA_0634 PF13087 AAA domain THMA_0634 PF13195 Protein of unknown function (DUF4011) THMA_0634 PF13195 Protein of unknown function (DUF4011) THMA_0634 PF13086 AAA domain THMA_0634 PF13087 AAA domain THMA_0635 PF13439 Glycosyltransferase Family 4 THMA_0635 PF00534 Glycosyl transferases group 1 THMA_0637 PF01501 Glycosyl transferase family 8 THMA_0637 PF00535 Glycosyl transferase family 2 THMA_0638 PF13439 Glycosyltransferase Family 4 THMA_0638 PF00534 Glycosyl transferases group 1 THMA_0640 PF13439 Glycosyltransferase Family 4 THMA_0640 PF00534 Glycosyl transferases group 1 THMA_0643 PF00534 Glycosyl transferases group 1 THMA_0643 PF13439 Glycosyltransferase Family 4 THMA_0646 PF16363 GDP-mannose 4,6 dehydratase THMA_0647 PF13477 Glycosyl transferase 4-like THMA_0647 PF00534 Glycosyl transferases group 1 THMA_0648 PF02397 Bacterial sugar transferase THMA_0649 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase THMA_0649 PF10135 Rod binding protein THMA_0654 PF02563 Polysaccharide biosynthesis/export protein THMA_0654 PF10531 SLBB domain THMA_0654 PF18412 Outer-membrane lipoprotein Wza C-terminal domain THMA_0656 PF13419 Haloacid dehalogenase-like hydrolase THMA_0658 PF03415 Clostripain family THMA_0660 PF02540 NAD synthase THMA_0662 PF02542 YgbB family THMA_0668 PF04055 Radical SAM superfamily THMA_0668 PF01938 TRAM domain THMA_0668 PF00919 Uncharacterized protein family UPF0004 THMA_0669 PF17284 Spermidine synthase tetramerisation domain THMA_0670 PF02675 S-adenosylmethionine decarboxylase THMA_0671 PF01381 Helix-turn-helix THMA_0672 PF02915 Rubrerythrin THMA_0673 PF01880 Desulfoferrodoxin THMA_0674 PF00301 Rubredoxin THMA_0675 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase THMA_0677 PF00550 Phosphopantetheine attachment site THMA_0680 PF00291 Pyridoxal-phosphate dependent enzyme THMA_0681 PF00132 Bacterial transferase hexapeptide (six repeats) THMA_0682 PF01026 TatD related DNase THMA_0683 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THMA_0689 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMA_0689 PF00460 Flagella basal body rod protein THMA_0689 PF07559 Flagellar basal body protein FlaE THMA_0690 PF06289 Flagellar and Swarming motility proteins THMA_0691 PF01618 MotA/TolQ/ExbB proton channel family THMA_0692 PF00691 OmpA family THMA_0692 PF13677 Membrane MotB of proton-channel complex MotA/MotB THMA_0694 PF02154 Flagellar motor switch protein FliM THMA_0694 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THMA_0695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THMA_0695 PF04509 CheC-like family THMA_0701 PF12169 DNA polymerase III subunits gamma and tau domain III THMA_0702 PF02575 YbaB/EbfC DNA-binding family THMA_0703 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THMA_0703 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THMA_0704 PF00162 Phosphoglycerate kinase THMA_0704 PF00121 Triosephosphate isomerase THMA_0707 PF01648 4'-phosphopantetheinyl transferase superfamily THMA_0709 PF05697 Bacterial trigger factor protein (TF) THMA_0709 PF05698 Bacterial trigger factor protein (TF) C-terminus THMA_0710 PF00574 Clp protease THMA_0713 PF00813 FliP family THMA_0715 PF00072 Response regulator receiver domain THMA_0716 PF01584 CheW-like domain THMA_0717 PF02895 Signal transducing histidine kinase, homodimeric domain THMA_0717 PF01584 CheW-like domain THMA_0717 PF01627 Hpt domain THMA_0717 PF07194 P2 response regulator binding domain THMA_0717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_0718 PF02464 Competence-damaged protein THMA_0718 PF18146 Damage-inducible protein CinA KH domain THMA_0718 PF00994 Probable molybdopterin binding domain THMA_0720 PF00005 ABC transporter THMA_0722 PF02527 rRNA small subunit methyltransferase G THMA_0723 PF03099 Biotin/lipoate A/B protein ligase family THMA_0724 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THMA_0730 PF12627 Probable RNA and SrmB- binding site of polymerase A THMA_0730 PF02272 DHHA1 domain THMA_0730 PF00571 CBS domain THMA_0730 PF01743 Poly A polymerase head domain THMA_0730 PF01368 DHH family THMA_0731 PF01039 Carboxyl transferase domain THMA_0733 PF00364 Biotin-requiring enzyme THMA_0734 PF01584 CheW-like domain THMA_0735 PF09190 DALR domain THMA_0735 PF01406 tRNA synthetases class I (C) catalytic domain THMA_0736 PF00464 Serine hydroxymethyltransferase THMA_0738 PF00773 RNB domain THMA_0738 PF17876 Cold shock domain THMA_0738 PF00575 S1 RNA binding domain THMA_0738 PF08206 Ribonuclease B OB domain THMA_0740 PF01699 Sodium/calcium exchanger protein THMA_0742 PF01523 Putative modulator of DNA gyrase THMA_0743 PF01523 Putative modulator of DNA gyrase THMA_0747 PF04607 Region found in RelA / SpoT proteins THMA_0747 PF13291 ACT domain THMA_0747 PF02824 TGS domain THMA_0748 PF02580 D-Tyr-tRNA(Tyr) deacylase THMA_0749 PF02677 Epoxyqueuosine reductase QueH THMA_0752 PF01134 Glucose inhibited division protein A THMA_0754 PF01238 Phosphomannose isomerase type I THMA_0757 PF01966 HD domain THMA_0758 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THMA_0758 PF02824 TGS domain THMA_0758 PF03129 Anticodon binding domain THMA_0758 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THMA_0759 PF01467 Cytidylyltransferase-like THMA_0760 PF00149 Calcineurin-like phosphoesterase THMA_0762 PF13439 Glycosyltransferase Family 4 THMA_0762 PF00534 Glycosyl transferases group 1 THMA_0765 PF13180 PDZ domain THMA_0765 PF03572 Peptidase family S41 THMA_0769 PF00485 Phosphoribulokinase / Uridine kinase family THMA_0771 PF02056 Family 4 glycosyl hydrolase THMA_0771 PF11975 Family 4 glycosyl hydrolase C-terminal domain THMA_0772 PF01209 ubiE/COQ5 methyltransferase family THMA_0773 PF04324 BFD-like [2Fe-2S] binding domain THMA_0773 PF18267 Rubredoxin NAD+ reductase C-terminal domain THMA_0773 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0773 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THMA_0774 PF00753 Metallo-beta-lactamase superfamily THMA_0774 PF00258 Flavodoxin THMA_0775 PF00535 Glycosyl transferase family 2 THMA_0776 PF00535 Glycosyl transferase family 2 THMA_0776 PF13181 Tetratricopeptide repeat THMA_0777 PF00669 Bacterial flagellin N-terminal helical region THMA_0777 PF00700 Bacterial flagellin C-terminal helical region THMA_0781 PF00318 Ribosomal protein S2 THMA_0782 PF01906 Putative heavy-metal-binding THMA_0784 PF00005 ABC transporter THMA_0785 PF00392 Bacterial regulatory proteins, gntR family THMA_0785 PF07702 UTRA domain THMA_0786 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THMA_0786 PF02806 Alpha amylase, C-terminal all-beta domain THMA_0786 PF00128 Alpha amylase, catalytic domain THMA_0787 PF01926 50S ribosome-binding GTPase THMA_0788 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THMA_0788 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THMA_0788 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THMA_0788 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THMA_0789 PF18693 TRAM domain THMA_0789 PF00919 Uncharacterized protein family UPF0004 THMA_0789 PF04055 Radical SAM superfamily THMA_0790 PF09115 DNA polymerase III, delta subunit, C terminal THMA_0791 PF04468 PSP1 C-terminal conserved region THMA_0792 PF11146 Protein of unknown function (DUF2905) THMA_0794 PF11987 Translation-initiation factor 2 THMA_0794 PF04760 Translation initiation factor IF-2, N-terminal region THMA_0794 PF00009 Elongation factor Tu GTP binding domain THMA_0799 PF00578 AhpC/TSA family THMA_0804 PF04454 Encapsulating protein for peroxidase THMA_0807 PF01964 Radical SAM ThiC family THMA_0809 PF10120 Thiamine-phosphate synthase THMA_0809 PF08543 Phosphomethylpyrimidine kinase THMA_0810 PF14489 QueF-like protein THMA_0811 PF02592 Putative vitamin uptake transporter THMA_0812 PF00005 ABC transporter THMA_0816 PF04029 2-phosphosulpholactate phosphatase THMA_0817 PF00698 Acyl transferase domain THMA_0818 PF02632 BioY family THMA_0819 PF03060 Nitronate monooxygenase THMA_0820 PF07977 FabA-like domain THMA_0821 PF02801 Beta-ketoacyl synthase, C-terminal domain THMA_0821 PF00109 Beta-ketoacyl synthase, N-terminal domain THMA_0822 PF06418 CTP synthase N-terminus THMA_0822 PF00117 Glutamine amidotransferase class-I THMA_0823 PF02811 PHP domain THMA_0824 PF00953 Glycosyl transferase family 4 THMA_0826 PF00578 AhpC/TSA family THMA_0826 PF10417 C-terminal domain of 1-Cys peroxiredoxin THMA_0827 PF00480 ROK family THMA_0828 PF00933 Glycosyl hydrolase family 3 N terminal domain THMA_0829 PF01547 Bacterial extracellular solute-binding protein THMA_0830 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0831 PF00528 Binding-protein-dependent transport system inner membrane component THMA_0832 PF01380 SIS domain THMA_0833 PF01979 Amidohydrolase family THMA_0834 PF01554 MatE THMA_0838 PF03808 Glycosyl transferase WecB/TagA/CpsF family THMA_0839 PF00860 Permease family THMA_0840 PF00465 Iron-containing alcohol dehydrogenase THMA_0842 PF01409 tRNA synthetases class II core domain (F) THMA_0842 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THMA_0843 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THMA_0843 PF01588 Putative tRNA binding domain THMA_0843 PF03147 Ferredoxin-fold anticodon binding domain THMA_0843 PF03484 tRNA synthetase B5 domain THMA_0843 PF03483 B3/4 domain THMA_0844 PF00440 Bacterial regulatory proteins, tetR family THMA_0844 PF18665 Tetracyclin repressor-like, C-terminal domain THMA_0846 PF04055 Radical SAM superfamily THMA_0846 PF06463 Molybdenum Cofactor Synthesis C THMA_0848 PF00005 ABC transporter THMA_0848 PF08402 TOBE domain THMA_0849 PF00294 pfkB family carbohydrate kinase THMA_0851 PF04055 Radical SAM superfamily THMA_0851 PF00919 Uncharacterized protein family UPF0004 THMA_0852 PF01063 Amino-transferase class IV THMA_0854 PF01751 Toprim domain THMA_0854 PF00204 DNA gyrase B THMA_0854 PF00986 DNA gyrase B subunit, carboxyl terminus THMA_0854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_0856 PF02491 SHS2 domain inserted in FTSA THMA_0856 PF11983 Membrane-attachment and polymerisation-promoting switch THMA_0857 PF00091 Tubulin/FtsZ family, GTPase domain THMA_0857 PF12327 FtsZ family, C-terminal domain THMA_0858 PF00437 Type II/IV secretion system protein THMA_0860 PF01098 Cell cycle protein THMA_0863 PF00072 Response regulator receiver domain THMA_0864 PF02971 Formiminotransferase domain THMA_0864 PF07837 Formiminotransferase domain, N-terminal subdomain THMA_0865 PF02590 Predicted SPOUT methyltransferase THMA_0866 PF03471 Transporter associated domain THMA_0866 PF00571 CBS domain THMA_0867 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THMA_0868 PF01926 50S ribosome-binding GTPase THMA_0868 PF07650 KH domain THMA_0869 PF01926 50S ribosome-binding GTPase THMA_0870 PF00684 DnaJ central domain THMA_0870 PF00226 DnaJ domain THMA_0870 PF01556 DnaJ C terminal domain THMA_0871 PF01025 GrpE THMA_0872 PF01628 HrcA protein C terminal domain THMA_0874 PF01300 Telomere recombination THMA_0874 PF03481 Putative GTP-binding controlling metal-binding THMA_0875 PF00672 HAMP domain THMA_0875 PF14827 Double sensory domain of two-component sensor kinase THMA_0875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_0875 PF00512 His Kinase A (phospho-acceptor) domain THMA_0875 PF13426 PAS domain THMA_0876 PF08668 HDOD domain THMA_0877 PF02033 Ribosome-binding factor A THMA_0878 PF01509 TruB family pseudouridylate synthase (N terminal domain) THMA_0878 PF16198 tRNA pseudouridylate synthase B C-terminal domain THMA_0878 PF01472 PUA domain THMA_0879 PF06574 FAD synthetase THMA_0879 PF01687 Riboflavin kinase THMA_0881 PF02699 Preprotein translocase subunit THMA_0882 PF02355 Protein export membrane protein THMA_0882 PF07549 SecD/SecF GG Motif THMA_0883 PF02355 Protein export membrane protein THMA_0883 PF07549 SecD/SecF GG Motif THMA_0884 PF00483 Nucleotidyl transferase THMA_0885 PF01281 Ribosomal protein L9, N-terminal domain THMA_0885 PF03948 Ribosomal protein L9, C-terminal domain THMA_0886 PF12706 Beta-lactamase superfamily domain THMA_0886 PF00753 Metallo-beta-lactamase superfamily THMA_0888 PF01145 SPFH domain / Band 7 family THMA_0890 PF13192 Thioredoxin domain THMA_0890 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0891 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_0892 PF03793 PASTA domain THMA_0892 PF03717 Penicillin-binding Protein dimerisation domain THMA_0892 PF00905 Penicillin binding protein transpeptidase domain THMA_0894 PF01795 MraW methylase family THMA_0895 PF10431 C-terminal, D2-small domain, of ClpB protein THMA_0895 PF00004 ATPase family associated with various cellular activities (AAA) THMA_0895 PF02861 Clp amino terminal domain, pathogenicity island component THMA_0895 PF17871 AAA lid domain THMA_0895 PF07724 AAA domain (Cdc48 subfamily) THMA_0896 PF00814 Glycoprotease family THMA_0898 PF16916 Dimerisation domain of Zinc Transporter THMA_0898 PF01545 Cation efflux family THMA_0899 PF00113 Enolase, C-terminal TIM barrel domain THMA_0899 PF03952 Enolase, N-terminal domain THMA_0900 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THMA_0900 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THMA_0900 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THMA_0902 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit THMA_0903 PF04204 Homoserine O-succinyltransferase THMA_0904 PF01053 Cys/Met metabolism PLP-dependent enzyme THMA_0905 PF03309 Type III pantothenate kinase THMA_0908 PF00912 Transglycosylase THMA_0908 PF00905 Penicillin binding protein transpeptidase domain THMA_0909 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain THMA_0909 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain THMA_0911 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain THMA_0911 PF13288 DXP reductoisomerase C-terminal domain THMA_0911 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase THMA_0912 PF17820 PDZ domain THMA_0912 PF02163 Peptidase family M50 THMA_0913 PF04551 GcpE protein THMA_0914 PF01769 Divalent cation transporter THMA_0914 PF03448 MgtE intracellular N domain THMA_0914 PF00571 CBS domain THMA_0915 PF02673 Bacitracin resistance protein BacA THMA_0917 PF08323 Starch synthase catalytic domain THMA_0917 PF00534 Glycosyl transferases group 1 THMA_0918 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain THMA_0918 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain THMA_0919 PF04232 Stage V sporulation protein S (SpoVS) THMA_0924 PF04542 Sigma-70 region 2 THMA_0924 PF04545 Sigma-70, region 4 THMA_0924 PF04539 Sigma-70 region 3 THMA_0925 PF03975 CheD chemotactic sensory transduction THMA_0926 PF04509 CheC-like family THMA_0928 PF10609 NUBPL iron-transfer P-loop NTPase THMA_0929 PF00448 SRP54-type protein, GTPase domain THMA_0930 PF00771 FHIPEP family THMA_0931 PF01312 FlhB HrpN YscU SpaS Family THMA_0932 PF01311 Bacterial export proteins, family 1 THMA_0933 PF01008 Initiation factor 2 subunit family THMA_0934 PF13145 PPIC-type PPIASE domain THMA_0935 PF03819 MazG nucleotide pyrophosphohydrolase domain THMA_0936 PF01865 Protein of unknown function DUF47 THMA_0937 PF01351 Ribonuclease HII THMA_0939 PF01384 Phosphate transporter family THMA_0940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_0942 PF00465 Iron-containing alcohol dehydrogenase THMA_0944 PF01256 Carbohydrate kinase THMA_0944 PF03853 YjeF-related protein N-terminus THMA_0947 PF02390 Putative methyltransferase THMA_0948 PF08299 Bacterial dnaA protein helix-turn-helix THMA_0948 PF11638 DnaA N-terminal domain THMA_0948 PF00308 Bacterial dnaA protein THMA_0950 PF16236 Domain of unknown function (DUF4895) THMA_0951 PF09967 VWA-like domain (DUF2201) THMA_0951 PF13203 Putative metallopeptidase domain THMA_0956 PF03600 Citrate transporter THMA_0957 PF00478 IMP dehydrogenase / GMP reductase domain THMA_0957 PF00571 CBS domain THMA_0958 PF01979 Amidohydrolase family THMA_0961 PF02261 Aspartate decarboxylase THMA_0962 PF01479 S4 domain THMA_0962 PF00849 RNA pseudouridylate synthase THMA_0966 PF00120 Glutamine synthetase, catalytic domain THMA_0966 PF03951 Glutamine synthetase, beta-Grasp domain THMA_0972 PF00356 Bacterial regulatory proteins, lacI family THMA_0975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THMA_0975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMA_0976 PF02780 Transketolase, C-terminal domain THMA_0976 PF02779 Transketolase, pyrimidine binding domain THMA_0977 PF00456 Transketolase, thiamine diphosphate binding domain THMA_0978 PF02653 Branched-chain amino acid transport system / permease component THMA_0979 PF00005 ABC transporter THMA_0981 PF13407 Periplasmic binding protein domain THMA_0982 PF05025 RbsD / FucU transport protein family THMA_0983 PF00294 pfkB family carbohydrate kinase THMA_0984 PF04011 LemA family THMA_0987 PF01969 Protein of unknown function DUF111 THMA_0988 PF00731 AIR carboxylase THMA_0989 PF02540 NAD synthase THMA_0990 PF02899 Phage integrase, N-terminal SAM-like domain THMA_0990 PF00589 Phage integrase family THMA_0995 PF00990 Diguanylate cyclase, GGDEF domain THMA_0996 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_1000 PF01206 Sulfurtransferase TusA THMA_1004 PF04143 Sulphur transport THMA_1005 PF01206 Sulfurtransferase TusA THMA_1006 PF00207 Alpha-2-macroglobulin family THMA_1006 PF07703 Alpha-2-macroglobulin bait region domain THMA_1006 PF01835 MG2 domain THMA_1006 PF07678 A-macroglobulin TED domain THMA_1006 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain THMA_1008 PF06672 Protein of unknown function (DUF1175) THMA_1012 PF00176 SNF2 family N-terminal domain THMA_1012 PF00271 Helicase conserved C-terminal domain THMA_1022 PF05168 HEPN domain THMA_1028 PF06719 AraC-type transcriptional regulator N-terminus THMA_1028 PF12833 Helix-turn-helix domain THMA_1029 PF00248 Aldo/keto reductase family THMA_1031 PF00248 Aldo/keto reductase family THMA_1037 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain THMA_1037 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THMA_1042 PF07690 Major Facilitator Superfamily THMA_1043 PF12146 Serine aminopeptidase, S33 THMA_1050 PF13732 Domain of unknown function (DUF4162) THMA_1050 PF00005 ABC transporter THMA_1053 PF00462 Glutaredoxin THMA_1055 PF01050 Mannose-6-phosphate isomerase THMA_1055 PF00483 Nucleotidyl transferase THMA_1056 PF02350 UDP-N-acetylglucosamine 2-epimerase THMA_1057 PF01502 Phosphoribosyl-AMP cyclohydrolase THMA_1057 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THMA_1058 PF00977 Histidine biosynthesis protein THMA_1059 PF00977 Histidine biosynthesis protein THMA_1060 PF00117 Glutamine amidotransferase class-I THMA_1061 PF00475 Imidazoleglycerol-phosphate dehydratase THMA_1062 PF00155 Aminotransferase class I and II THMA_1063 PF00815 Histidinol dehydrogenase THMA_1064 PF01634 ATP phosphoribosyltransferase THMA_1065 PF13393 Histidyl-tRNA synthetase THMA_1066 PF07282 Putative transposase DNA-binding domain THMA_1066 PF01385 Probable transposase THMA_1066 PF12323 Helix-turn-helix domain THMA_1067 PF03600 Citrate transporter THMA_1069 PF03775 Septum formation inhibitor MinC, C-terminal domain THMA_1070 PF05343 M42 glutamyl aminopeptidase THMA_1071 PF05343 M42 glutamyl aminopeptidase THMA_1072 PF05343 M42 glutamyl aminopeptidase THMA_1074 PF10531 SLBB domain THMA_1076 PF00005 ABC transporter THMA_1078 PF03091 CutA1 divalent ion tolerance protein THMA_1079 PF02254 TrkA-N domain THMA_1079 PF07885 Ion channel THMA_1081 PF04232 Stage V sporulation protein S (SpoVS) THMA_1084 PF02836 Glycosyl hydrolases family 2, TIM barrel domain THMA_1084 PF00703 Glycosyl hydrolases family 2 THMA_1084 PF02837 Glycosyl hydrolases family 2, sugar binding domain THMA_1085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1085 PF00005 ABC transporter THMA_1086 PF00005 ABC transporter THMA_1086 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1087 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1087 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_1088 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1089 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_1090 PF11975 Family 4 glycosyl hydrolase C-terminal domain THMA_1090 PF02056 Family 4 glycosyl hydrolase THMA_1091 PF00455 DeoR C terminal sensor domain THMA_1091 PF08220 DeoR-like helix-turn-helix domain THMA_1093 PF01261 Xylose isomerase-like TIM barrel THMA_1095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMA_1095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THMA_1099 PF02569 Pantoate-beta-alanine ligase THMA_1102 PF02502 Ribose/Galactose Isomerase THMA_1103 PF01740 STAS domain THMA_1104 PF00717 Peptidase S24-like THMA_1104 PF01726 LexA DNA binding domain THMA_1105 PF01951 Archease protein family (MTH1598/TM1083) THMA_1106 PF00521 DNA gyrase/topoisomerase IV, subunit A THMA_1106 PF03989 DNA gyrase C-terminal domain, beta-propeller THMA_1107 PF01588 Putative tRNA binding domain THMA_1107 PF08264 Anticodon-binding domain of tRNA THMA_1107 PF09334 tRNA synthetases class I (M) THMA_1110 PF02254 TrkA-N domain THMA_1110 PF02080 TrkA-C domain THMA_1112 PF02386 Cation transport protein THMA_1113 PF13393 Histidyl-tRNA synthetase THMA_1113 PF03129 Anticodon binding domain THMA_1116 PF00750 tRNA synthetases class I (R) THMA_1116 PF05746 DALR anticodon binding domain THMA_1116 PF03485 Arginyl tRNA synthetase N terminal domain THMA_1117 PF05958 tRNA (Uracil-5-)-methyltransferase THMA_1118 PF10397 Adenylosuccinate lyase C-terminus THMA_1118 PF00206 Lyase THMA_1119 PF00709 Adenylosuccinate synthetase THMA_1120 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THMA_1120 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THMA_1122 PF02223 Thymidylate kinase THMA_1124 PF12850 Calcineurin-like phosphoesterase superfamily domain THMA_1125 PF00035 Double-stranded RNA binding motif THMA_1125 PF14622 Ribonuclease-III-like THMA_1143 PF13416 Bacterial extracellular solute-binding protein THMA_1144 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1145 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1146 PF07195 Flagellar hook-associated protein 2 C-terminus THMA_1146 PF02465 Flagellar hook-associated protein 2 N-terminus THMA_1146 PF07196 Flagellin hook IN motif THMA_1151 PF00210 Ferritin-like domain THMA_1152 PF01048 Phosphorylase superfamily THMA_1153 PF01515 Phosphate acetyl/butaryl transferase THMA_1154 PF00155 Aminotransferase class I and II THMA_1155 PF07726 ATPase family associated with various cellular activities (AAA) THMA_1155 PF17863 AAA lid domain THMA_1159 PF02653 Branched-chain amino acid transport system / permease component THMA_1160 PF11862 Domain of unknown function (DUF3382) THMA_1160 PF02653 Branched-chain amino acid transport system / permease component THMA_1161 PF00005 ABC transporter THMA_1161 PF12399 Branched-chain amino acid ATP-binding cassette transporter THMA_1162 PF00005 ABC transporter THMA_1163 PF00478 IMP dehydrogenase / GMP reductase domain THMA_1163 PF00571 CBS domain THMA_1164 PF02683 Cytochrome C biogenesis protein transmembrane region THMA_1166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_1168 PF01966 HD domain THMA_1170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_1170 PF00672 HAMP domain THMA_1171 PF01966 HD domain THMA_1171 PF00072 Response regulator receiver domain THMA_1172 PF00180 Isocitrate/isopropylmalate dehydrogenase THMA_1174 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_1175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1175 PF00005 ABC transporter THMA_1176 PF00005 ABC transporter THMA_1176 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1177 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1177 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_1178 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THMA_1179 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THMA_1179 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THMA_1180 PF04024 PspC domain THMA_1182 PF00117 Glutamine amidotransferase class-I THMA_1186 PF03448 MgtE intracellular N domain THMA_1186 PF01769 Divalent cation transporter THMA_1186 PF00571 CBS domain THMA_1187 PF12706 Beta-lactamase superfamily domain THMA_1188 PF17155 Gammaproteobacterial periplasmic sensor domain THMA_1188 PF00990 Diguanylate cyclase, GGDEF domain THMA_1190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMA_1191 PF04055 Radical SAM superfamily THMA_1191 PF06969 HemN C-terminal domain THMA_1193 PF00343 Carbohydrate phosphorylase THMA_1193 PF11897 Protein of unknown function (DUF3417) THMA_1195 PF00072 Response regulator receiver domain THMA_1197 PF03063 Prismane/CO dehydrogenase family THMA_1202 PF13419 Haloacid dehalogenase-like hydrolase THMA_1203 PF00583 Acetyltransferase (GNAT) family THMA_1204 PF02561 Flagellar protein FliS THMA_1206 PF00293 NUDIX domain THMA_1207 PF02463 RecF/RecN/SMC N terminal domain THMA_1207 PF06470 SMC proteins Flexible Hinge Domain THMA_1208 PF00248 Aldo/keto reductase family THMA_1209 PF00990 Diguanylate cyclase, GGDEF domain THMA_1209 PF00563 EAL domain THMA_1209 PF03707 Bacterial signalling protein N terminal repeat THMA_1210 PF02142 MGS-like domain THMA_1212 PF01594 AI-2E family transporter THMA_1216 PF10509 Galactokinase galactose-binding signature THMA_1216 PF00288 GHMP kinases N terminal domain THMA_1216 PF08544 GHMP kinases C terminal THMA_1217 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain THMA_1217 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain THMA_1219 PF02836 Glycosyl hydrolases family 2, TIM barrel domain THMA_1219 PF02929 Beta galactosidase small chain THMA_1219 PF00703 Glycosyl hydrolases family 2 THMA_1219 PF16353 Domain of unknown function(DUF4981) THMA_1219 PF02837 Glycosyl hydrolases family 2, sugar binding domain THMA_1220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1220 PF00005 ABC transporter THMA_1221 PF08532 Beta-galactosidase trimerisation domain THMA_1221 PF02449 Beta-galactosidase THMA_1221 PF08533 Beta-galactosidase C-terminal domain THMA_1222 PF00005 ABC transporter THMA_1222 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1223 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1223 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_1224 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1227 PF07745 Glycosyl hydrolase family 53 THMA_1228 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1229 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1229 PF14785 Maltose transport system permease protein MalF P2 domain THMA_1230 PF01547 Bacterial extracellular solute-binding protein THMA_1231 PF01899 Na+/H+ ion antiporter subunit THMA_1232 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) THMA_1235 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THMA_1235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THMA_1235 PF00361 Proton-conducting membrane transporter THMA_1235 PF13244 Domain of unknown function (DUF4040) THMA_1236 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THMA_1237 PF00361 Proton-conducting membrane transporter THMA_1238 PF00361 Proton-conducting membrane transporter THMA_1240 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THMA_1241 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THMA_1241 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THMA_1242 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THMA_1243 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_1243 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THMA_1245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1245 PF00005 ABC transporter THMA_1246 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1246 PF00005 ABC transporter THMA_1247 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_1247 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1248 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1249 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_1250 PF00480 ROK family THMA_1250 PF01325 Iron dependent repressor, N-terminal DNA binding domain THMA_1251 PF04041 beta-1,4-mannooligosaccharide phosphorylase THMA_1252 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_1254 PF01380 SIS domain THMA_1254 PF01418 Helix-turn-helix domain, rpiR family THMA_1255 PF00535 Glycosyl transferase family 2 THMA_1256 PF00534 Glycosyl transferases group 1 THMA_1257 PF07748 Glycosyl hydrolases family 38 C-terminal domain THMA_1257 PF01074 Glycosyl hydrolases family 38 N-terminal domain THMA_1257 PF09261 Alpha mannosidase middle domain THMA_1258 PF08402 TOBE domain THMA_1258 PF00005 ABC transporter THMA_1259 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1260 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1263 PF00580 UvrD/REP helicase N-terminal domain THMA_1263 PF13361 UvrD-like helicase C-terminal domain THMA_1265 PF06071 Protein of unknown function (DUF933) THMA_1265 PF01926 50S ribosome-binding GTPase THMA_1268 PF01259 SAICAR synthetase THMA_1269 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase THMA_1271 PF16904 Phosphoribosylformylglycinamidine synthase II C-terminus THMA_1271 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THMA_1271 PF02769 AIR synthase related protein, C-terminal domain THMA_1271 PF00586 AIR synthase related protein, N-terminal domain THMA_1272 PF00156 Phosphoribosyl transferase domain THMA_1273 PF00551 Formyl transferase THMA_1274 PF01808 AICARFT/IMPCHase bienzyme THMA_1274 PF02142 MGS-like domain THMA_1275 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THMA_1275 PF02843 Phosphoribosylglycinamide synthetase, C domain THMA_1275 PF02844 Phosphoribosylglycinamide synthetase, N domain THMA_1276 PF00586 AIR synthase related protein, N-terminal domain THMA_1276 PF02769 AIR synthase related protein, C-terminal domain THMA_1278 PF00795 Carbon-nitrogen hydrolase THMA_1278 PF02540 NAD synthase THMA_1279 PF13419 Haloacid dehalogenase-like hydrolase THMA_1280 PF00155 Aminotransferase class I and II THMA_1281 PF00664 ABC transporter transmembrane region THMA_1281 PF00005 ABC transporter THMA_1283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_1283 PF00512 His Kinase A (phospho-acceptor) domain THMA_1284 PF00072 Response regulator receiver domain THMA_1284 PF00486 Transcriptional regulatory protein, C terminal THMA_1285 PF01895 PhoU domain THMA_1286 PF00005 ABC transporter THMA_1287 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1289 PF12849 PBP superfamily domain THMA_1294 PF06968 Biotin and Thiamin Synthesis associated domain THMA_1294 PF04055 Radical SAM superfamily THMA_1295 PF01053 Cys/Met metabolism PLP-dependent enzyme THMA_1296 PF07963 Prokaryotic N-terminal methylation motif THMA_1296 PF00114 Pilin (bacterial filament) THMA_1297 PF01425 Amidase THMA_1298 PF02637 GatB domain THMA_1298 PF02934 GatB/GatE catalytic domain THMA_1301 PF03459 TOBE domain THMA_1301 PF00005 ABC transporter THMA_1301 PF17912 MalK OB fold domain THMA_1302 PF02491 SHS2 domain inserted in FTSA THMA_1303 PF01713 Smr domain THMA_1303 PF00488 MutS domain V THMA_1306 PF02056 Family 4 glycosyl hydrolase THMA_1306 PF11975 Family 4 glycosyl hydrolase C-terminal domain THMA_1307 PF00535 Glycosyl transferase family 2 THMA_1309 PF02660 Glycerol-3-phosphate acyltransferase THMA_1310 PF00355 Rieske [2Fe-2S] domain THMA_1312 PF01717 Cobalamin-independent synthase, Catalytic domain THMA_1312 PF08267 Cobalamin-independent synthase, N-terminal domain THMA_1313 PF07883 Cupin domain THMA_1314 PF01018 GTP1/OBG THMA_1314 PF01926 50S ribosome-binding GTPase THMA_1314 PF04055 Radical SAM superfamily THMA_1317 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THMA_1318 PF10609 NUBPL iron-transfer P-loop NTPase THMA_1319 PF01209 ubiE/COQ5 methyltransferase family THMA_1321 PF00753 Metallo-beta-lactamase superfamily THMA_1321 PF16123 Hydroxyacylglutathione hydrolase C-terminus THMA_1323 PF00248 Aldo/keto reductase family THMA_1327 PF00005 ABC transporter THMA_1334 PF00005 ABC transporter THMA_1334 PF00664 ABC transporter transmembrane region THMA_1337 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system THMA_1338 PF00931 NB-ARC domain THMA_1338 PF13176 Tetratricopeptide repeat THMA_1342 PF00664 ABC transporter transmembrane region THMA_1342 PF00005 ABC transporter THMA_1343 PF00664 ABC transporter transmembrane region THMA_1343 PF00005 ABC transporter THMA_1345 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system THMA_1348 PF04055 Radical SAM superfamily THMA_1348 PF13186 Iron-sulfur cluster-binding domain THMA_1349 PF04055 Radical SAM superfamily THMA_1349 PF06463 Molybdenum Cofactor Synthesis C THMA_1351 PF00005 ABC transporter THMA_1352 PF00664 ABC transporter transmembrane region THMA_1352 PF00005 ABC transporter THMA_1364 PF00355 Rieske [2Fe-2S] domain THMA_1369 PF00312 Ribosomal protein S15 THMA_1370 PF00575 S1 RNA binding domain THMA_1370 PF03725 3' exoribonuclease family, domain 2 THMA_1370 PF01138 3' exoribonuclease family, domain 1 THMA_1370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THMA_1370 PF00013 KH domain THMA_1371 PF00675 Insulinase (Peptidase family M16) THMA_1371 PF05193 Peptidase M16 inactive domain THMA_1372 PF00571 CBS domain THMA_1372 PF00478 IMP dehydrogenase / GMP reductase domain THMA_1374 PF01594 AI-2E family transporter THMA_1375 PF12146 Serine aminopeptidase, S33 THMA_1376 PF00749 tRNA synthetases class I (E and Q), catalytic domain THMA_1379 PF00478 IMP dehydrogenase / GMP reductase domain THMA_1379 PF00571 CBS domain THMA_1382 PF01139 tRNA-splicing ligase RtcB THMA_1384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_1384 PF00989 PAS fold THMA_1384 PF00512 His Kinase A (phospho-acceptor) domain THMA_1385 PF00072 Response regulator receiver domain THMA_1385 PF00486 Transcriptional regulatory protein, C terminal THMA_1386 PF00133 tRNA synthetases class I (I, L, M and V) THMA_1386 PF08264 Anticodon-binding domain of tRNA THMA_1386 PF06827 Zinc finger found in FPG and IleRS THMA_1387 PF00437 Type II/IV secretion system protein THMA_1388 PF00472 RF-1 domain THMA_1388 PF03462 PCRF domain THMA_1389 PF00460 Flagella basal body rod protein THMA_1390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMA_1390 PF00460 Flagella basal body rod protein THMA_1391 PF02049 Flagellar hook-basal body complex protein FliE THMA_1394 PF00005 ABC transporter THMA_1395 PF01458 Uncharacterized protein family (UPF0051) THMA_1396 PF01458 Uncharacterized protein family (UPF0051) THMA_1397 PF00266 Aminotransferase class-V THMA_1398 PF01592 NifU-like N terminal domain THMA_1400 PF00300 Histidine phosphatase superfamily (branch 1) THMA_1402 PF13416 Bacterial extracellular solute-binding protein THMA_1403 PF00005 ABC transporter THMA_1403 PF08402 TOBE domain THMA_1404 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1405 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1406 PF02403 Seryl-tRNA synthetase N-terminal domain THMA_1406 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THMA_1407 PF04452 RNA methyltransferase THMA_1410 PF00288 GHMP kinases N terminal domain THMA_1411 PF00156 Phosphoribosyl transferase domain THMA_1412 PF00342 Phosphoglucose isomerase THMA_1414 PF01121 Dephospho-CoA kinase THMA_1420 PF02861 Clp amino terminal domain, pathogenicity island component THMA_1420 PF17871 AAA lid domain THMA_1420 PF10431 C-terminal, D2-small domain, of ClpB protein THMA_1420 PF00004 ATPase family associated with various cellular activities (AAA) THMA_1420 PF07724 AAA domain (Cdc48 subfamily) THMA_1422 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THMA_1423 PF01430 Hsp33 protein THMA_1425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THMA_1425 PF02272 DHHA1 domain THMA_1425 PF01411 tRNA synthetases class II (A) THMA_1427 PF01255 Putative undecaprenyl diphosphate synthase THMA_1428 PF01765 Ribosome recycling factor THMA_1429 PF00266 Aminotransferase class-V THMA_1430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THMA_1430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THMA_1432 PF13732 Domain of unknown function (DUF4162) THMA_1432 PF00005 ABC transporter THMA_1433 PF01061 ABC-2 type transporter THMA_1434 PF00534 Glycosyl transferases group 1 THMA_1434 PF13439 Glycosyltransferase Family 4 THMA_1439 PF03537 Glycoside-hydrolase family GH114 THMA_1443 PF08244 Glycosyl hydrolases family 32 C terminal THMA_1443 PF00251 Glycosyl hydrolases family 32 N-terminal domain THMA_1444 PF00459 Inositol monophosphatase family THMA_1446 PF01458 Uncharacterized protein family (UPF0051) THMA_1447 PF00005 ABC transporter THMA_1448 PF00483 Nucleotidyl transferase THMA_1448 PF01066 CDP-alcohol phosphatidyltransferase THMA_1455 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THMA_1455 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THMA_1455 PF00037 4Fe-4S binding domain THMA_1456 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THMA_1456 PF02906 Iron only hydrogenase large subunit, C-terminal domain THMA_1456 PF02256 Iron hydrogenase small subunit THMA_1456 PF00037 4Fe-4S binding domain THMA_1457 PF02629 CoA binding domain THMA_1457 PF06971 Putative DNA-binding protein N-terminus THMA_1458 PF17200 Single Cache domain 2 THMA_1458 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMA_1458 PF00672 HAMP domain THMA_1459 PF00230 Major intrinsic protein THMA_1460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMA_1460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THMA_1461 PF04309 Glycerol-3-phosphate responsive antiterminator THMA_1462 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_1462 PF04324 BFD-like [2Fe-2S] binding domain THMA_1463 PF04324 BFD-like [2Fe-2S] binding domain THMA_1463 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_1467 PF00398 Ribosomal RNA adenine dimethylase THMA_1468 PF09210 Domain of unknown function (DUF1957) THMA_1468 PF03065 Glycosyl hydrolase family 57 THMA_1470 PF03061 Thioesterase superfamily THMA_1470 PF01008 Initiation factor 2 subunit family THMA_1471 PF01336 OB-fold nucleic acid binding domain THMA_1471 PF02938 GAD domain THMA_1471 PF00152 tRNA synthetases class II (D, K and N) THMA_1472 PF01740 STAS domain THMA_1473 PF02224 Cytidylate kinase THMA_1474 PF02401 LytB protein THMA_1475 PF00575 S1 RNA binding domain THMA_1476 PF01926 50S ribosome-binding GTPase THMA_1476 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THMA_1477 PF02660 Glycerol-3-phosphate acyltransferase THMA_1480 PF03461 TRCF domain THMA_1480 PF00271 Helicase conserved C-terminal domain THMA_1480 PF00270 DEAD/DEAH box helicase THMA_1480 PF02559 CarD-like/TRCF domain THMA_1480 PF17757 UvrB interaction domain THMA_1481 PF04545 Sigma-70, region 4 THMA_1481 PF04539 Sigma-70 region 3 THMA_1481 PF04542 Sigma-70 region 2 THMA_1481 PF00140 Sigma-70 factor, region 1.2 THMA_1481 PF03979 Sigma-70 factor, region 1.1 THMA_1482 PF08275 DNA primase catalytic core, N-terminal domain THMA_1482 PF01807 CHC2 zinc finger THMA_1483 PF00380 Ribosomal protein S9/S16 THMA_1484 PF00572 Ribosomal protein L13 THMA_1485 PF12822 ECF transporter, substrate-specific component THMA_1486 PF01016 Ribosomal L27 protein THMA_1488 PF00829 Ribosomal prokaryotic L21 protein THMA_1491 PF02096 60Kd inner membrane protein THMA_1492 PF01809 Putative membrane protein insertion efficiency factor THMA_1493 PF00825 Ribonuclease P THMA_1494 PF00468 Ribosomal protein L34 THMA_1495 PF04227 Indigoidine synthase A like protein THMA_1496 PF12557 Cob(I)alamin adenosyltransferase N terminal THMA_1496 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP THMA_1497 PF01926 50S ribosome-binding GTPase THMA_1498 PF01966 HD domain THMA_1499 PF17248 Family of unknown function (DUF5317) THMA_1500 PF02645 Uncharacterised protein, DegV family COG1307 THMA_1501 PF00480 ROK family THMA_1502 PF07497 Rho termination factor, RNA-binding domain THMA_1502 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMA_1502 PF07498 Rho termination factor, N-terminal domain THMA_1503 PF01196 Ribosomal protein L17 THMA_1504 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THMA_1504 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THMA_1504 PF01000 RNA polymerase Rpb3/RpoA insert domain THMA_1505 PF00163 Ribosomal protein S4/S9 N-terminal domain THMA_1505 PF01479 S4 domain THMA_1506 PF00411 Ribosomal protein S11 THMA_1507 PF00416 Ribosomal protein S13/S18 THMA_1508 PF00444 Ribosomal protein L36 THMA_1509 PF01176 Translation initiation factor 1A / IF-1 THMA_1510 PF00557 Metallopeptidase family M24 THMA_1511 PF05191 Adenylate kinase, active site lid THMA_1512 PF00344 SecY translocase THMA_1513 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THMA_1514 PF00327 Ribosomal protein L30p/L7e THMA_1515 PF03719 Ribosomal protein S5, C-terminal domain THMA_1515 PF00333 Ribosomal protein S5, N-terminal domain THMA_1516 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THMA_1517 PF00347 Ribosomal protein L6 THMA_1518 PF00410 Ribosomal protein S8 THMA_1519 PF00253 Ribosomal protein S14p/S29e THMA_1520 PF00673 ribosomal L5P family C-terminus THMA_1520 PF00281 Ribosomal protein L5 THMA_1521 PF00467 KOW motif THMA_1521 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THMA_1522 PF00238 Ribosomal protein L14p/L23e THMA_1523 PF00366 Ribosomal protein S17 THMA_1524 PF00831 Ribosomal L29 protein THMA_1525 PF00252 Ribosomal protein L16p/L10e THMA_1526 PF07650 KH domain THMA_1526 PF00189 Ribosomal protein S3, C-terminal domain THMA_1527 PF00237 Ribosomal protein L22p/L17e THMA_1528 PF00203 Ribosomal protein S19 THMA_1529 PF03947 Ribosomal Proteins L2, C-terminal domain THMA_1529 PF00181 Ribosomal Proteins L2, RNA binding domain THMA_1530 PF00276 Ribosomal protein L23 THMA_1531 PF00573 Ribosomal protein L4/L1 family THMA_1532 PF00297 Ribosomal protein L3 THMA_1533 PF00338 Ribosomal protein S10p/S20e THMA_1534 PF00009 Elongation factor Tu GTP binding domain THMA_1534 PF03143 Elongation factor Tu C-terminal domain THMA_1534 PF03144 Elongation factor Tu domain 2 THMA_1535 PF03144 Elongation factor Tu domain 2 THMA_1535 PF00009 Elongation factor Tu GTP binding domain THMA_1535 PF03764 Elongation factor G, domain IV THMA_1535 PF14492 Elongation Factor G, domain II THMA_1535 PF00679 Elongation factor G C-terminus THMA_1536 PF00177 Ribosomal protein S7p/S5e THMA_1537 PF00164 Ribosomal protein S12/S23 THMA_1539 PF02562 PhoH-like protein THMA_1540 PF07698 7TM receptor with intracellular HD hydrolase THMA_1540 PF01966 HD domain THMA_1540 PF07697 7TM-HD extracellular THMA_1541 PF02130 Uncharacterized protein family UPF0054 THMA_1543 PF04298 Putative neutral zinc metallopeptidase THMA_1544 PF01189 16S rRNA methyltransferase RsmB/F THMA_1544 PF01029 NusB family THMA_1545 PF05636 HIGH Nucleotidyl Transferase THMA_1548 PF01546 Peptidase family M20/M25/M40 THMA_1548 PF07687 Peptidase dimerisation domain THMA_1549 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THMA_1549 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THMA_1550 PF00696 Amino acid kinase family THMA_1550 PF13840 ACT domain THMA_1550 PF01842 ACT domain THMA_1551 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal THMA_1551 PF00132 Bacterial transferase hexapeptide (six repeats) THMA_1551 PF14602 Hexapeptide repeat of succinyl-transferase THMA_1552 PF05173 Dihydrodipicolinate reductase, C-terminus THMA_1552 PF01113 Dihydrodipicolinate reductase, N-terminus THMA_1553 PF00701 Dihydrodipicolinate synthetase family THMA_1554 PF01678 Diaminopimelate epimerase THMA_1555 PF02774 Semialdehyde dehydrogenase, dimerisation domain THMA_1555 PF01118 Semialdehyde dehydrogenase, NAD binding domain THMA_1561 PF02082 Transcriptional regulator THMA_1562 PF01040 UbiA prenyltransferase family THMA_1564 PF01012 Electron transfer flavoprotein domain THMA_1565 PF00766 Electron transfer flavoprotein FAD-binding domain THMA_1565 PF01012 Electron transfer flavoprotein domain THMA_1569 PF00348 Polyprenyl synthetase THMA_1571 PF02310 B12 binding domain THMA_1571 PF04055 Radical SAM superfamily THMA_1573 PF02119 Flagellar P-ring protein THMA_1574 PF02107 Flagellar L-ring protein THMA_1576 PF00460 Flagella basal body rod protein THMA_1576 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMA_1577 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMA_1577 PF00460 Flagella basal body rod protein THMA_1581 PF10141 Single-strand DNA-specific exonuclease, C terminal domain THMA_1581 PF17768 RecJ OB domain THMA_1581 PF01368 DHH family THMA_1581 PF02272 DHHA1 domain THMA_1582 PF01966 HD domain THMA_1583 PF02719 Polysaccharide biosynthesis protein THMA_1584 PF00953 Glycosyl transferase family 4 THMA_1585 PF07136 Protein of unknown function (DUF1385) THMA_1586 PF01871 AMMECR1 THMA_1588 PF02424 ApbE family THMA_1591 PF02545 Maf-like protein THMA_1592 PF04002 RadC-like JAB domain THMA_1594 PF01791 DeoC/LacD family aldolase THMA_1596 PF01702 Queuine tRNA-ribosyltransferase THMA_1599 PF00708 Acylphosphatase THMA_1600 PF02978 Signal peptide binding domain THMA_1600 PF02881 SRP54-type protein, helical bundle domain THMA_1600 PF00448 SRP54-type protein, GTPase domain THMA_1601 PF00886 Ribosomal protein S16 THMA_1603 PF01782 RimM N-terminal domain THMA_1603 PF05239 PRC-barrel domain THMA_1604 PF01746 tRNA (Guanine-1)-methyltransferase THMA_1605 PF09936 SAM-dependent RNA methyltransferase THMA_1606 PF01245 Ribosomal protein L19 THMA_1607 PF10502 Signal peptidase, peptidase S26 THMA_1609 PF01416 tRNA pseudouridine synthase THMA_1611 PF01728 FtsJ-like methyltransferase THMA_1611 PF01479 S4 domain THMA_1613 PF07516 SecA Wing and Scaffold domain THMA_1613 PF00271 Helicase conserved C-terminal domain THMA_1613 PF07517 SecA DEAD-like domain THMA_1613 PF01043 SecA preprotein cross-linking domain THMA_1614 PF03462 PCRF domain THMA_1614 PF00472 RF-1 domain THMA_1615 PF02954 Bacterial regulatory protein, Fis family THMA_1615 PF00072 Response regulator receiver domain THMA_1615 PF00158 Sigma-54 interaction domain THMA_1619 PF00156 Phosphoribosyl transferase domain THMA_1620 PF13660 Domain of unknown function (DUF4147) THMA_1620 PF05161 MOFRL family THMA_1623 PF00990 Diguanylate cyclase, GGDEF domain THMA_1630 PF00707 Translation initiation factor IF-3, C-terminal domain THMA_1630 PF05198 Translation initiation factor IF-3, N-terminal domain THMA_1631 PF01632 Ribosomal protein L35 THMA_1632 PF00453 Ribosomal protein L20 THMA_1633 PF10609 NUBPL iron-transfer P-loop NTPase THMA_1634 PF05230 MASE2 domain THMA_1634 PF00990 Diguanylate cyclase, GGDEF domain THMA_1635 PF02272 DHHA1 domain THMA_1635 PF01368 DHH family THMA_1636 PF01048 Phosphorylase superfamily THMA_1637 PF01168 Alanine racemase, N-terminal domain THMA_1638 PF08281 Sigma-70, region 4 THMA_1638 PF04542 Sigma-70 region 2 THMA_1641 PF04055 Radical SAM superfamily THMA_1641 PF18693 TRAM domain THMA_1641 PF00919 Uncharacterized protein family UPF0004 THMA_1642 PF02829 3H domain THMA_1642 PF08279 HTH domain THMA_1643 PF07690 Major Facilitator Superfamily THMA_1644 PF00696 Amino acid kinase family THMA_1645 PF00889 Elongation factor TS THMA_1646 PF10150 Ribonuclease E/G family THMA_1646 PF00575 S1 RNA binding domain THMA_1647 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THMA_1647 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus THMA_1648 PF02645 Uncharacterised protein, DegV family COG1307 THMA_1649 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THMA_1650 PF02874 ATP synthase alpha/beta family, beta-barrel domain THMA_1650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMA_1651 PF00231 ATP synthase THMA_1652 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMA_1652 PF00306 ATP synthase alpha/beta chain, C terminal domain THMA_1652 PF02874 ATP synthase alpha/beta family, beta-barrel domain THMA_1653 PF00213 ATP synthase delta (OSCP) subunit THMA_1654 PF00430 ATP synthase B/B' CF(0) THMA_1655 PF00137 ATP synthase subunit C THMA_1656 PF00119 ATP synthase A chain THMA_1659 PF13690 Chemotaxis phosphatase CheX THMA_1660 PF00476 DNA polymerase family A THMA_1660 PF01612 3'-5' exonuclease THMA_1660 PF01367 5'-3' exonuclease, C-terminal SAM fold THMA_1660 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THMA_1661 PF02627 Carboxymuconolactone decarboxylase family THMA_1662 PF03009 Glycerophosphoryl diester phosphodiesterase family THMA_1664 PF06421 GTP-binding protein LepA C-terminus THMA_1664 PF03144 Elongation factor Tu domain 2 THMA_1664 PF00679 Elongation factor G C-terminus THMA_1664 PF00009 Elongation factor Tu GTP binding domain THMA_1665 PF16353 Domain of unknown function(DUF4981) THMA_1665 PF02837 Glycosyl hydrolases family 2, sugar binding domain THMA_1665 PF02836 Glycosyl hydrolases family 2, TIM barrel domain THMA_1665 PF02929 Beta galactosidase small chain THMA_1665 PF00703 Glycosyl hydrolases family 2 THMA_1667 PF01195 Peptidyl-tRNA hydrolase THMA_1668 PF14693 Ribosomal protein TL5, C-terminal domain THMA_1668 PF01386 Ribosomal L25p family THMA_1669 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THMA_1669 PF14572 Phosphoribosyl synthetase-associated domain THMA_1670 PF12804 MobA-like NTP transferase domain THMA_1670 PF14602 Hexapeptide repeat of succinyl-transferase THMA_1670 PF00132 Bacterial transferase hexapeptide (six repeats) THMA_1673 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THMA_1674 PF02190 ATP-dependent protease La (LON) substrate-binding domain THMA_1674 PF05362 Lon protease (S16) C-terminal proteolytic domain THMA_1674 PF00004 ATPase family associated with various cellular activities (AAA) THMA_1676 PF12320 Type 5 capsule protein repressor C-terminal domain THMA_1676 PF00149 Calcineurin-like phosphoesterase THMA_1677 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system THMA_1679 PF00005 ABC transporter THMA_1680 PF00970 Oxidoreductase FAD-binding domain THMA_1680 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THMA_1680 PF00175 Oxidoreductase NAD-binding domain THMA_1681 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THMA_1681 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMA_1682 PF00186 Dihydrofolate reductase THMA_1683 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THMA_1683 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THMA_1683 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain THMA_1683 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain THMA_1684 PF01958 Domain of unknown function DUF108 THMA_1684 PF03447 Homoserine dehydrogenase, NAD binding domain THMA_1685 PF02445 Quinolinate synthetase A protein THMA_1686 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THMA_1686 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THMA_1689 PF01966 HD domain THMA_1691 PF00128 Alpha amylase, catalytic domain THMA_1692 PF00009 Elongation factor Tu GTP binding domain THMA_1692 PF14492 Elongation Factor G, domain II THMA_1692 PF03764 Elongation factor G, domain IV THMA_1692 PF00679 Elongation factor G C-terminus THMA_1694 PF02885 Glycosyl transferase family, helical bundle domain THMA_1694 PF00591 Glycosyl transferase family, a/b domain THMA_1694 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain THMA_1695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMA_1695 PF16736 Single Cache-like THMA_1695 PF00989 PAS fold THMA_1695 PF00512 His Kinase A (phospho-acceptor) domain THMA_1696 PF00072 Response regulator receiver domain THMA_1696 PF00486 Transcriptional regulatory protein, C terminal THMA_1698 PF01649 Ribosomal protein S20 THMA_1699 PF00438 S-adenosylmethionine synthetase, N-terminal domain THMA_1699 PF02772 S-adenosylmethionine synthetase, central domain THMA_1699 PF02773 S-adenosylmethionine synthetase, C-terminal domain THMA_1702 PF01327 Polypeptide deformylase THMA_1703 PF01975 Survival protein SurE THMA_1704 PF00005 ABC transporter THMA_1705 PF05175 Methyltransferase small domain THMA_1707 PF07687 Peptidase dimerisation domain THMA_1707 PF01546 Peptidase family M20/M25/M40 THMA_1708 PF01261 Xylose isomerase-like TIM barrel THMA_1714 PF01312 FlhB HrpN YscU SpaS Family THMA_1720 PF11871 Domain of unknown function (DUF3391) THMA_1720 PF01966 HD domain THMA_1724 PF00072 Response regulator receiver domain THMA_1725 PF00313 'Cold-shock' DNA-binding domain THMA_1726 PF01197 Ribosomal protein L31 THMA_1727 PF00013 KH domain THMA_1727 PF03725 3' exoribonuclease family, domain 2 THMA_1727 PF00575 S1 RNA binding domain THMA_1727 PF01138 3' exoribonuclease family, domain 1 THMA_1727 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THMA_1728 PF01476 LysM domain THMA_1728 PF03734 L,D-transpeptidase catalytic domain THMA_1729 PF02441 Flavoprotein THMA_1729 PF04127 DNA / pantothenate metabolism flavoprotein THMA_1730 PF01192 RNA polymerase Rpb6 THMA_1731 PF00625 Guanylate kinase THMA_1732 PF04025 Domain of unknown function (DUF370) THMA_1734 PF00266 Aminotransferase class-V THMA_1736 PF02568 Thiamine biosynthesis protein (ThiI) THMA_1736 PF02926 THUMP domain THMA_1738 PF01478 Type IV leader peptidase family THMA_1738 PF06750 Bacterial Peptidase A24 N-terminal domain THMA_1739 PF17785 PUA-like domain THMA_1739 PF10672 S-adenosylmethionine-dependent methyltransferase THMA_1740 PF00155 Aminotransferase class I and II THMA_1743 PF01554 MatE THMA_1745 PF00884 Sulfatase THMA_1747 PF01336 OB-fold nucleic acid binding domain THMA_1747 PF00152 tRNA synthetases class II (D, K and N) THMA_1748 PF01272 Transcription elongation factor, GreA/GreB, C-term THMA_1748 PF03449 Transcription elongation factor, N-terminal THMA_1749 PF03477 ATP cone domain THMA_1750 PF14527 WhiA LAGLIDADG-like domain THMA_1750 PF02650 WhiA C-terminal HTH domain THMA_1751 PF01933 Uncharacterised protein family UPF0052 THMA_1752 PF03668 P-loop ATPase protein family THMA_1755 PF01205 Uncharacterized protein family UPF0029 THMA_1755 PF09186 Domain of unknown function (DUF1949) THMA_1756 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THMA_1756 PF01565 FAD binding domain THMA_1757 PF04055 Radical SAM superfamily THMA_1759 PF16745 RsgA N-terminal domain THMA_1759 PF03193 RsgA GTPase THMA_1760 PF00834 Ribulose-phosphate 3 epimerase family THMA_1761 PF05190 MutS family domain IV THMA_1761 PF05188 MutS domain II THMA_1761 PF00488 MutS domain V THMA_1761 PF01624 MutS domain I THMA_1761 PF05192 MutS domain III THMA_1762 PF13673 Acetyltransferase (GNAT) domain THMA_1765 PF01979 Amidohydrolase family THMA_1767 PF01813 ATP synthase subunit D THMA_1768 PF02272 DHHA1 domain THMA_1768 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THMA_1768 PF01411 tRNA synthetases class II (A) THMA_1770 PF02548 Ketopantoate hydroxymethyltransferase THMA_1772 PF05491 RuvB C-terminal winged helix domain THMA_1772 PF05496 Holliday junction DNA helicase RuvB P-loop domain THMA_1772 PF17864 RuvB AAA lid domain THMA_1773 PF01168 Alanine racemase, N-terminal domain THMA_1774 PF02325 YGGT family THMA_1775 PF01513 ATP-NAD kinase THMA_1776 PF01895 PhoU domain THMA_1778 PF03796 DnaB-like helicase C terminal domain THMA_1778 PF00772 DnaB-like helicase N terminal domain THMA_1779 PF01048 Phosphorylase superfamily THMA_1780 PF02535 ZIP Zinc transporter THMA_1782 PF00636 Ribonuclease III domain THMA_1783 PF00588 SpoU rRNA Methylase family THMA_1783 PF08032 RNA 2'-O ribose methyltransferase substrate binding THMA_1784 PF13344 Haloacid dehalogenase-like hydrolase THMA_1785 PF00248 Aldo/keto reductase family THMA_1786 PF01212 Beta-eliminating lyase THMA_1788 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THMA_1789 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1790 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1790 PF12911 N-terminal TM domain of oligopeptide transport permease C THMA_1791 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1791 PF00005 ABC transporter THMA_1792 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMA_1792 PF00005 ABC transporter THMA_1793 PF00404 Dockerin type I domain THMA_1793 PF00150 Cellulase (glycosyl hydrolase family 5) THMA_1793 PF03425 Carbohydrate binding domain (family 11) THMA_1795 PF17757 UvrB interaction domain THMA_1795 PF04851 Type III restriction enzyme, res subunit THMA_1795 PF12344 Ultra-violet resistance protein B THMA_1795 PF02151 UvrB/uvrC motif THMA_1795 PF00271 Helicase conserved C-terminal domain THMA_1796 PF00871 Acetokinase family THMA_1797 PF01515 Phosphate acetyl/butaryl transferase THMA_1798 PF00871 Acetokinase family THMA_1805 PF02151 UvrB/uvrC motif THMA_1805 PF00271 Helicase conserved C-terminal domain THMA_1805 PF12344 Ultra-violet resistance protein B THMA_1805 PF17757 UvrB interaction domain THMA_1805 PF04851 Type III restriction enzyme, res subunit THMA_1806 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THMA_1806 PF02780 Transketolase, C-terminal domain THMA_1806 PF02779 Transketolase, pyrimidine binding domain THMA_1807 PF01132 Elongation factor P (EF-P) OB domain THMA_1807 PF08207 Elongation factor P (EF-P) KOW-like domain THMA_1807 PF09285 Elongation factor P, C-terminal THMA_1809 PF01029 NusB family THMA_1810 PF01268 Formate--tetrahydrofolate ligase THMA_1811 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THMA_1811 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THMA_1812 PF02601 Exonuclease VII, large subunit THMA_1812 PF13742 OB-fold nucleic acid binding domain THMA_1813 PF02609 Exonuclease VII small subunit THMA_1814 PF02780 Transketolase, C-terminal domain THMA_1814 PF02779 Transketolase, pyrimidine binding domain THMA_1814 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THMA_1816 PF02734 DAK2 domain THMA_1816 PF13684 Dihydroxyacetone kinase family THMA_1818 PF01676 Metalloenzyme superfamily THMA_1818 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase THMA_1820 PF01475 Ferric uptake regulator family THMA_1821 PF08529 NusA N-terminal domain THMA_1821 PF00575 S1 RNA binding domain THMA_1821 PF13184 NusA-like KH domain THMA_1822 PF17384 RimP C-terminal SH3 domain THMA_1822 PF02576 RimP N-terminal domain THMA_1824 PF00764 Arginosuccinate synthase THMA_1825 PF00206 Lyase THMA_1826 PF01118 Semialdehyde dehydrogenase, NAD binding domain THMA_1826 PF02774 Semialdehyde dehydrogenase, dimerisation domain THMA_1827 PF01960 ArgJ family THMA_1828 PF00696 Amino acid kinase family THMA_1829 PF00202 Aminotransferase class-III THMA_1833 PF00563 EAL domain THMA_1833 PF03707 Bacterial signalling protein N terminal repeat THMA_1833 PF00990 Diguanylate cyclase, GGDEF domain THMA_1837 PF09701 CRISPR-associated protein (Cas_Cmr5) THMA_1842 PF09827 CRISPR associated protein Cas2 THMA_1843 PF01867 CRISPR associated protein Cas1 THMA_1845 PF00270 DEAD/DEAH box helicase THMA_1845 PF18395 Cas3 C-terminal domain THMA_1845 PF18019 HD domain THMA_1849 PF00684 DnaJ central domain THMA_1849 PF01556 DnaJ C terminal domain THMA_1849 PF00226 DnaJ domain THMA_1853 PF03787 RAMP superfamily THMA_1855 PF03787 RAMP superfamily THMA_1857 PF18211 Csm1 subunit domain B THMA_1862 PF08264 Anticodon-binding domain of tRNA THMA_1862 PF10458 Valyl tRNA synthetase tRNA binding arm THMA_1862 PF00133 tRNA synthetases class I (I, L, M and V) THMA_1863 PF02417 Chromate transporter THMA_1865 PF02568 Thiamine biosynthesis protein (ThiI) THMA_1865 PF00958 GMP synthase C terminal domain THMA_1865 PF00117 Glutamine amidotransferase class-I THMA_1867 PF01145 SPFH domain / Band 7 family THMA_1867 PF12221 Bacterial membrane protein N terminal THMA_1868 PF01145 SPFH domain / Band 7 family THMA_1870 PF00885 6,7-dimethyl-8-ribityllumazine synthase THMA_1871 PF00925 GTP cyclohydrolase II THMA_1871 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THMA_1872 PF00677 Lumazine binding domain THMA_1873 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THMA_1873 PF01872 RibD C-terminal domain THMA_1874 PF08448 PAS fold THMA_1874 PF00990 Diguanylate cyclase, GGDEF domain THMA_1877 PF00211 Adenylate and Guanylate cyclase catalytic domain THMA_1877 PF02743 Cache domain THMA_1877 PF00672 HAMP domain THMA_1878 PF02056 Family 4 glycosyl hydrolase THMA_1878 PF11975 Family 4 glycosyl hydrolase C-terminal domain THMA_1879 PF00128 Alpha amylase, catalytic domain THMA_1880 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1881 PF14785 Maltose transport system permease protein MalF P2 domain THMA_1881 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1882 PF01547 Bacterial extracellular solute-binding protein THMA_1883 PF00128 Alpha amylase, catalytic domain THMA_1888 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THMA_1888 PF00128 Alpha amylase, catalytic domain THMA_1888 PF03714 Bacterial pullanase-associated domain THMA_1890 PF00480 ROK family THMA_1890 PF01325 Iron dependent repressor, N-terminal DNA binding domain THMA_1891 PF00005 ABC transporter THMA_1892 PF02653 Branched-chain amino acid transport system / permease component THMA_1893 PF13407 Periplasmic binding protein domain THMA_1894 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1895 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1896 PF01547 Bacterial extracellular solute-binding protein THMA_1897 PF00232 Glycosyl hydrolase family 1 THMA_1898 PF06165 Glycosyltransferase family 36 THMA_1898 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain THMA_1903 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1904 PF00528 Binding-protein-dependent transport system inner membrane component THMA_1906 PF00356 Bacterial regulatory proteins, lacI family THMA_1907 PF12072 Domain of unknown function (DUF3552) THMA_1907 PF01966 HD domain THMA_1907 PF00013 KH domain THMA_1908 PF02631 RecX family THMA_1909 PF00154 recA bacterial DNA recombination protein THMA_1911 PF01066 CDP-alcohol phosphatidyltransferase THMA_1912 PF04055 Radical SAM superfamily THMA_1912 PF00919 Uncharacterized protein family UPF0004 THMA_1912 PF18693 TRAM domain THMA_1915 PF04493 Endonuclease V THMA_1917 PF00056 lactate/malate dehydrogenase, NAD binding domain THMA_1917 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THMA_1918 PF02361 Cobalt transport protein THMA_1919 PF13654 AAA domain THMA_1919 PF05362 Lon protease (S16) C-terminal proteolytic domain THMA_1920 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THMA_1922 PF01894 Uncharacterised protein family UPF0047 THMA_1923 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THMA_1923 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THMA_1924 PF00313 'Cold-shock' DNA-binding domain THMA_1925 PF00749 tRNA synthetases class I (E and Q), catalytic domain THMA_1926 PF12850 Calcineurin-like phosphoesterase superfamily domain THMA_1928 PF00149 Calcineurin-like phosphoesterase THMA_1928 PF02872 5'-nucleotidase, C-terminal domain