locus-tag class description TRQ2_0001 PF11638 DnaA N-terminal domain TRQ2_0001 PF08299 Bacterial dnaA protein helix-turn-helix TRQ2_0001 PF00308 Bacterial dnaA protein TRQ2_0002 PF02390 Putative methyltransferase TRQ2_0005 PF01256 Carbohydrate kinase TRQ2_0005 PF03853 YjeF-related protein N-terminus TRQ2_0006 PF01464 Transglycosylase SLT domain TRQ2_0007 PF00465 Iron-containing alcohol dehydrogenase TRQ2_0009 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRQ2_0010 PF01384 Phosphate transporter family TRQ2_0012 PF01351 Ribonuclease HII TRQ2_0013 PF01865 Protein of unknown function DUF47 TRQ2_0014 PF03819 MazG nucleotide pyrophosphohydrolase domain TRQ2_0015 PF13145 PPIC-type PPIASE domain TRQ2_0016 PF01008 Initiation factor 2 subunit family TRQ2_0017 PF01311 Bacterial export proteins, family 1 TRQ2_0018 PF01312 FlhB HrpN YscU SpaS Family TRQ2_0019 PF00771 FHIPEP family TRQ2_0020 PF00448 SRP54-type protein, GTPase domain TRQ2_0021 PF10609 NUBPL iron-transfer P-loop NTPase TRQ2_0023 PF04509 CheC-like family TRQ2_0024 PF03975 CheD chemotactic sensory transduction TRQ2_0025 PF04539 Sigma-70 region 3 TRQ2_0025 PF04545 Sigma-70, region 4 TRQ2_0025 PF04542 Sigma-70 region 2 TRQ2_0030 PF04232 Stage V sporulation protein S (SpoVS) TRQ2_0031 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TRQ2_0031 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TRQ2_0032 PF00534 Glycosyl transferases group 1 TRQ2_0032 PF08323 Starch synthase catalytic domain TRQ2_0034 PF02673 Bacitracin resistance protein BacA TRQ2_0035 PF01769 Divalent cation transporter TRQ2_0035 PF00571 CBS domain TRQ2_0035 PF03448 MgtE intracellular N domain TRQ2_0036 PF04551 GcpE protein TRQ2_0037 PF17820 PDZ domain TRQ2_0037 PF02163 Peptidase family M50 TRQ2_0038 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TRQ2_0038 PF13288 DXP reductoisomerase C-terminal domain TRQ2_0038 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TRQ2_0040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TRQ2_0040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TRQ2_0041 PF00905 Penicillin binding protein transpeptidase domain TRQ2_0041 PF00912 Transglycosylase TRQ2_0041 PF17092 Penicillin-binding protein OB-like domain TRQ2_0044 PF03309 Type III pantothenate kinase TRQ2_0045 PF01053 Cys/Met metabolism PLP-dependent enzyme TRQ2_0046 PF04204 Homoserine O-succinyltransferase TRQ2_0047 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TRQ2_0049 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TRQ2_0049 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TRQ2_0049 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TRQ2_0050 PF03952 Enolase, N-terminal domain TRQ2_0050 PF00113 Enolase, C-terminal TIM barrel domain TRQ2_0051 PF16916 Dimerisation domain of Zinc Transporter TRQ2_0051 PF01545 Cation efflux family TRQ2_0053 PF00814 Glycoprotease family TRQ2_0054 PF02861 Clp amino terminal domain, pathogenicity island component TRQ2_0054 PF10431 C-terminal, D2-small domain, of ClpB protein TRQ2_0054 PF07724 AAA domain (Cdc48 subfamily) TRQ2_0054 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_0054 PF17871 AAA lid domain TRQ2_0055 PF01795 MraW methylase family TRQ2_0057 PF00905 Penicillin binding protein transpeptidase domain TRQ2_0057 PF03793 PASTA domain TRQ2_0057 PF03717 Penicillin-binding Protein dimerisation domain TRQ2_0058 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0059 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0059 PF13192 Thioredoxin domain TRQ2_0061 PF01145 SPFH domain / Band 7 family TRQ2_0063 PF00753 Metallo-beta-lactamase superfamily TRQ2_0063 PF12706 Beta-lactamase superfamily domain TRQ2_0064 PF03948 Ribosomal protein L9, C-terminal domain TRQ2_0064 PF01281 Ribosomal protein L9, N-terminal domain TRQ2_0065 PF00483 Nucleotidyl transferase TRQ2_0066 PF02355 Protein export membrane protein TRQ2_0066 PF07549 SecD/SecF GG Motif TRQ2_0067 PF02355 Protein export membrane protein TRQ2_0067 PF07549 SecD/SecF GG Motif TRQ2_0068 PF02699 Preprotein translocase subunit TRQ2_0070 PF06574 FAD synthetase TRQ2_0070 PF01687 Riboflavin kinase TRQ2_0071 PF16198 tRNA pseudouridylate synthase B C-terminal domain TRQ2_0071 PF01509 TruB family pseudouridylate synthase (N terminal domain) TRQ2_0071 PF01472 PUA domain TRQ2_0072 PF02033 Ribosome-binding factor A TRQ2_0073 PF08668 HDOD domain TRQ2_0074 PF13426 PAS domain TRQ2_0074 PF00512 His Kinase A (phospho-acceptor) domain TRQ2_0074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_0074 PF00672 HAMP domain TRQ2_0074 PF14827 Double sensory domain of two-component sensor kinase TRQ2_0075 PF01300 Telomere recombination TRQ2_0075 PF03481 Putative GTP-binding controlling metal-binding TRQ2_0076 PF01628 HrcA protein C terminal domain TRQ2_0077 PF01025 GrpE TRQ2_0078 PF01556 DnaJ C terminal domain TRQ2_0078 PF00226 DnaJ domain TRQ2_0078 PF00684 DnaJ central domain TRQ2_0079 PF01926 50S ribosome-binding GTPase TRQ2_0080 PF07650 KH domain TRQ2_0080 PF01926 50S ribosome-binding GTPase TRQ2_0081 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TRQ2_0082 PF00571 CBS domain TRQ2_0082 PF03471 Transporter associated domain TRQ2_0083 PF02590 Predicted SPOUT methyltransferase TRQ2_0084 PF02971 Formiminotransferase domain TRQ2_0084 PF07837 Formiminotransferase domain, N-terminal subdomain TRQ2_0085 PF00072 Response regulator receiver domain TRQ2_0088 PF01098 Cell cycle protein TRQ2_0091 PF12327 FtsZ family, C-terminal domain TRQ2_0091 PF00091 Tubulin/FtsZ family, GTPase domain TRQ2_0092 PF02491 SHS2 domain inserted in FTSA TRQ2_0092 PF11983 Membrane-attachment and polymerisation-promoting switch TRQ2_0094 PF01751 Toprim domain TRQ2_0094 PF00986 DNA gyrase B subunit, carboxyl terminus TRQ2_0094 PF00204 DNA gyrase B TRQ2_0094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_0096 PF01063 Amino-transferase class IV TRQ2_0097 PF00919 Uncharacterized protein family UPF0004 TRQ2_0097 PF04055 Radical SAM superfamily TRQ2_0099 PF00294 pfkB family carbohydrate kinase TRQ2_0100 PF00005 ABC transporter TRQ2_0100 PF08402 TOBE domain TRQ2_0101 PF06463 Molybdenum Cofactor Synthesis C TRQ2_0101 PF04055 Radical SAM superfamily TRQ2_0103 PF00440 Bacterial regulatory proteins, tetR family TRQ2_0103 PF18665 Tetracyclin repressor-like, C-terminal domain TRQ2_0104 PF03483 B3/4 domain TRQ2_0104 PF01588 Putative tRNA binding domain TRQ2_0104 PF03484 tRNA synthetase B5 domain TRQ2_0104 PF03147 Ferredoxin-fold anticodon binding domain TRQ2_0104 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TRQ2_0105 PF01409 tRNA synthetases class II core domain (F) TRQ2_0105 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TRQ2_0106 PF00465 Iron-containing alcohol dehydrogenase TRQ2_0107 PF00860 Permease family TRQ2_0108 PF03808 Glycosyl transferase WecB/TagA/CpsF family TRQ2_0111 PF01554 MatE TRQ2_0112 PF01979 Amidohydrolase family TRQ2_0113 PF01380 SIS domain TRQ2_0114 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0115 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0116 PF01547 Bacterial extracellular solute-binding protein TRQ2_0117 PF00933 Glycosyl hydrolase family 3 N terminal domain TRQ2_0118 PF00480 ROK family TRQ2_0119 PF00578 AhpC/TSA family TRQ2_0119 PF10417 C-terminal domain of 1-Cys peroxiredoxin TRQ2_0121 PF00953 Glycosyl transferase family 4 TRQ2_0122 PF02811 PHP domain TRQ2_0123 PF00117 Glutamine amidotransferase class-I TRQ2_0123 PF06418 CTP synthase N-terminus TRQ2_0124 PF00109 Beta-ketoacyl synthase, N-terminal domain TRQ2_0124 PF02801 Beta-ketoacyl synthase, C-terminal domain TRQ2_0125 PF07977 FabA-like domain TRQ2_0126 PF03060 Nitronate monooxygenase TRQ2_0127 PF02632 BioY family TRQ2_0128 PF00698 Acyl transferase domain TRQ2_0129 PF04029 2-phosphosulpholactate phosphatase TRQ2_0134 PF00005 ABC transporter TRQ2_0135 PF02592 Putative vitamin uptake transporter TRQ2_0136 PF14489 QueF-like protein TRQ2_0137 PF08543 Phosphomethylpyrimidine kinase TRQ2_0137 PF10120 Thiamine-phosphate synthase TRQ2_0139 PF01964 Radical SAM ThiC family TRQ2_0142 PF04454 Encapsulating protein for peroxidase TRQ2_0146 PF00578 AhpC/TSA family TRQ2_0151 PF04760 Translation initiation factor IF-2, N-terminal region TRQ2_0151 PF11987 Translation-initiation factor 2 TRQ2_0151 PF00009 Elongation factor Tu GTP binding domain TRQ2_0152 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family TRQ2_0154 PF04468 PSP1 C-terminal conserved region TRQ2_0155 PF09115 DNA polymerase III, delta subunit, C terminal TRQ2_0156 PF00919 Uncharacterized protein family UPF0004 TRQ2_0156 PF01938 TRAM domain TRQ2_0156 PF04055 Radical SAM superfamily TRQ2_0157 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TRQ2_0157 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TRQ2_0157 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TRQ2_0157 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TRQ2_0158 PF01926 50S ribosome-binding GTPase TRQ2_0159 PF00128 Alpha amylase, catalytic domain TRQ2_0159 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TRQ2_0159 PF02806 Alpha amylase, C-terminal all-beta domain TRQ2_0160 PF00392 Bacterial regulatory proteins, gntR family TRQ2_0160 PF07702 UTRA domain TRQ2_0161 PF00005 ABC transporter TRQ2_0163 PF01906 Putative heavy-metal-binding TRQ2_0164 PF00318 Ribosomal protein S2 TRQ2_0168 PF00669 Bacterial flagellin N-terminal helical region TRQ2_0168 PF00700 Bacterial flagellin C-terminal helical region TRQ2_0169 PF00535 Glycosyl transferase family 2 TRQ2_0169 PF13181 Tetratricopeptide repeat TRQ2_0172 PF00258 Flavodoxin TRQ2_0172 PF00753 Metallo-beta-lactamase superfamily TRQ2_0173 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0173 PF18267 Rubredoxin NAD+ reductase C-terminal domain TRQ2_0173 PF04324 BFD-like [2Fe-2S] binding domain TRQ2_0173 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TRQ2_0173 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TRQ2_0174 PF01209 ubiE/COQ5 methyltransferase family TRQ2_0175 PF11975 Family 4 glycosyl hydrolase C-terminal domain TRQ2_0175 PF02056 Family 4 glycosyl hydrolase TRQ2_0176 PF00485 Phosphoribulokinase / Uridine kinase family TRQ2_0180 PF03572 Peptidase family S41 TRQ2_0180 PF13180 PDZ domain TRQ2_0183 PF00534 Glycosyl transferases group 1 TRQ2_0183 PF13439 Glycosyltransferase Family 4 TRQ2_0186 PF01467 Cytidylyltransferase-like TRQ2_0187 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRQ2_0187 PF02824 TGS domain TRQ2_0187 PF03129 Anticodon binding domain TRQ2_0187 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TRQ2_0188 PF01966 HD domain TRQ2_0191 PF01238 Phosphomannose isomerase type I TRQ2_0193 PF01134 Glucose inhibited division protein A TRQ2_0196 PF02677 Epoxyqueuosine reductase QueH TRQ2_0197 PF02580 D-Tyr-tRNA(Tyr) deacylase TRQ2_0198 PF13291 ACT domain TRQ2_0198 PF04607 Region found in RelA / SpoT proteins TRQ2_0198 PF02824 TGS domain TRQ2_0200 PF01523 Putative modulator of DNA gyrase TRQ2_0201 PF01523 Putative modulator of DNA gyrase TRQ2_0203 PF01699 Sodium/calcium exchanger protein TRQ2_0205 PF08206 Ribonuclease B OB domain TRQ2_0205 PF00773 RNB domain TRQ2_0205 PF00575 S1 RNA binding domain TRQ2_0205 PF17876 Cold shock domain TRQ2_0207 PF00464 Serine hydroxymethyltransferase TRQ2_0208 PF09190 DALR domain TRQ2_0208 PF01406 tRNA synthetases class I (C) catalytic domain TRQ2_0209 PF01584 CheW-like domain TRQ2_0210 PF00682 HMGL-like TRQ2_0210 PF02436 Conserved carboxylase domain TRQ2_0210 PF00364 Biotin-requiring enzyme TRQ2_0212 PF01039 Carboxyl transferase domain TRQ2_0213 PF01966 HD domain TRQ2_0213 PF01743 Poly A polymerase head domain TRQ2_0213 PF12627 Probable RNA and SrmB- binding site of polymerase A TRQ2_0219 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TRQ2_0220 PF03099 Biotin/lipoate A/B protein ligase family TRQ2_0221 PF02527 rRNA small subunit methyltransferase G TRQ2_0223 PF00005 ABC transporter TRQ2_0225 PF02464 Competence-damaged protein TRQ2_0225 PF18146 Damage-inducible protein CinA KH domain TRQ2_0225 PF00994 Probable molybdopterin binding domain TRQ2_0226 PF01584 CheW-like domain TRQ2_0226 PF02895 Signal transducing histidine kinase, homodimeric domain TRQ2_0226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_0226 PF01627 Hpt domain TRQ2_0226 PF07194 P2 response regulator binding domain TRQ2_0227 PF01584 CheW-like domain TRQ2_0228 PF00072 Response regulator receiver domain TRQ2_0230 PF00813 FliP family TRQ2_0233 PF00574 Clp protease TRQ2_0234 PF05697 Bacterial trigger factor protein (TF) TRQ2_0234 PF05698 Bacterial trigger factor protein (TF) C-terminus TRQ2_0236 PF01648 4'-phosphopantetheinyl transferase superfamily TRQ2_0239 PF00162 Phosphoglycerate kinase TRQ2_0239 PF00121 Triosephosphate isomerase TRQ2_0240 PF00162 Phosphoglycerate kinase TRQ2_0241 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TRQ2_0241 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TRQ2_0243 PF12169 DNA polymerase III subunits gamma and tau domain III TRQ2_0249 PF04509 CheC-like family TRQ2_0249 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TRQ2_0250 PF02154 Flagellar motor switch protein FliM TRQ2_0250 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TRQ2_0252 PF00691 OmpA family TRQ2_0252 PF13677 Membrane MotB of proton-channel complex MotA/MotB TRQ2_0253 PF01618 MotA/TolQ/ExbB proton channel family TRQ2_0254 PF06289 Flagellar and Swarming motility proteins TRQ2_0255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TRQ2_0255 PF00460 Flagella basal body rod protein TRQ2_0255 PF07559 Flagellar basal body protein FlaE TRQ2_0261 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TRQ2_0262 PF01026 TatD related DNase TRQ2_0263 PF00132 Bacterial transferase hexapeptide (six repeats) TRQ2_0264 PF00291 Pyridoxal-phosphate dependent enzyme TRQ2_0267 PF00550 Phosphopantetheine attachment site TRQ2_0269 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase TRQ2_0270 PF00301 Rubredoxin TRQ2_0271 PF01880 Desulfoferrodoxin TRQ2_0272 PF02915 Rubrerythrin TRQ2_0273 PF01381 Helix-turn-helix TRQ2_0274 PF02675 S-adenosylmethionine decarboxylase TRQ2_0275 PF17284 Spermidine synthase tetramerisation domain TRQ2_0276 PF04055 Radical SAM superfamily TRQ2_0276 PF01938 TRAM domain TRQ2_0276 PF00919 Uncharacterized protein family UPF0004 TRQ2_0281 PF02542 YgbB family TRQ2_0283 PF02540 NAD synthase TRQ2_0289 PF02563 Polysaccharide biosynthesis/export protein TRQ2_0289 PF18412 Outer-membrane lipoprotein Wza C-terminal domain TRQ2_0289 PF10531 SLBB domain TRQ2_0294 PF10135 Rod binding protein TRQ2_0294 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TRQ2_0295 PF02397 Bacterial sugar transferase TRQ2_0296 PF00534 Glycosyl transferases group 1 TRQ2_0296 PF13439 Glycosyltransferase Family 4 TRQ2_0300 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase TRQ2_0301 PF01467 Cytidylyltransferase-like TRQ2_0303 PF00483 Nucleotidyl transferase TRQ2_0304 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TRQ2_0305 PF16363 GDP-mannose 4,6 dehydratase TRQ2_0306 PF04321 RmlD substrate binding domain TRQ2_0309 PF13439 Glycosyltransferase Family 4 TRQ2_0309 PF00534 Glycosyl transferases group 1 TRQ2_0316 PF03787 RAMP superfamily TRQ2_0326 PF02350 UDP-N-acetylglucosamine 2-epimerase TRQ2_0329 PF16123 Hydroxyacylglutathione hydrolase C-terminus TRQ2_0329 PF00753 Metallo-beta-lactamase superfamily TRQ2_0331 PF01084 Ribosomal protein S18 TRQ2_0332 PF00436 Single-strand binding protein family TRQ2_0333 PF01250 Ribosomal protein S6 TRQ2_0338 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0339 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0341 PF00860 Permease family TRQ2_0344 PF00005 ABC transporter TRQ2_0345 PF03717 Penicillin-binding Protein dimerisation domain TRQ2_0345 PF00905 Penicillin binding protein transpeptidase domain TRQ2_0349 PF01368 DHH family TRQ2_0349 PF00571 CBS domain TRQ2_0349 PF07085 DRTGG domain TRQ2_0349 PF02833 DHHA2 domain TRQ2_0350 PF00892 EamA-like transporter family TRQ2_0351 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TRQ2_0351 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TRQ2_0353 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TRQ2_0353 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TRQ2_0353 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TRQ2_0356 PF01434 Peptidase family M41 TRQ2_0356 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_0356 PF17862 AAA+ lid domain TRQ2_0356 PF06480 FtsH Extracellular TRQ2_0357 PF01171 PP-loop family TRQ2_0357 PF11734 TilS substrate C-terminal domain TRQ2_0358 PF03807 NADP oxidoreductase coenzyme F420-dependent TRQ2_0358 PF14748 Pyrroline-5-carboxylate reductase dimerisation TRQ2_0359 PF00583 Acetyltransferase (GNAT) family TRQ2_0360 PF00929 Exonuclease TRQ2_0360 PF14579 Helix-hairpin-helix motif TRQ2_0360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRQ2_0360 PF07733 Bacterial DNA polymerase III alpha NTPase domain TRQ2_0360 PF02811 PHP domain TRQ2_0361 PF02075 Crossover junction endodeoxyribonuclease RuvC TRQ2_0362 PF02547 Queuosine biosynthesis protein TRQ2_0363 PF00795 Carbon-nitrogen hydrolase TRQ2_0364 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TRQ2_0365 PF13180 PDZ domain TRQ2_0365 PF17820 PDZ domain TRQ2_0366 PF00448 SRP54-type protein, GTPase domain TRQ2_0366 PF02881 SRP54-type protein, helical bundle domain TRQ2_0369 PF02082 Transcriptional regulator TRQ2_0371 PF17746 SfsA N-terminal OB domain TRQ2_0371 PF03749 Sugar fermentation stimulation protein RE domain TRQ2_0376 PF01544 CorA-like Mg2+ transporter protein TRQ2_0379 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TRQ2_0379 PF00117 Glutamine amidotransferase class-I TRQ2_0380 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TRQ2_0380 PF02142 MGS-like domain TRQ2_0380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TRQ2_0381 PF00180 Isocitrate/isopropylmalate dehydrogenase TRQ2_0382 PF00694 Aconitase C-terminal domain TRQ2_0383 PF00330 Aconitase family (aconitate hydratase) TRQ2_0384 PF08502 LeuA allosteric (dimerisation) domain TRQ2_0384 PF00682 HMGL-like TRQ2_0385 PF08502 LeuA allosteric (dimerisation) domain TRQ2_0385 PF00682 HMGL-like TRQ2_0386 PF00920 Dehydratase family TRQ2_0387 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TRQ2_0387 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TRQ2_0388 PF10369 Small subunit of acetolactate synthase TRQ2_0389 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRQ2_0389 PF00205 Thiamine pyrophosphate enzyme, central domain TRQ2_0389 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRQ2_0390 PF00696 Amino acid kinase family TRQ2_0390 PF01842 ACT domain TRQ2_0390 PF13840 ACT domain TRQ2_0391 PF00291 Pyridoxal-phosphate dependent enzyme TRQ2_0392 PF00288 GHMP kinases N terminal domain TRQ2_0393 PF00005 ABC transporter TRQ2_0395 PF03949 Malic enzyme, NAD binding domain TRQ2_0395 PF00390 Malic enzyme, N-terminal domain TRQ2_0396 PF05681 Fumarate hydratase (Fumerase) TRQ2_0396 PF05683 Fumarase C-terminus TRQ2_0398 PF00291 Pyridoxal-phosphate dependent enzyme TRQ2_0399 PF01545 Cation efflux family TRQ2_0400 PF13514 AAA domain TRQ2_0403 PF04545 Sigma-70, region 4 TRQ2_0403 PF04539 Sigma-70 region 3 TRQ2_0403 PF00140 Sigma-70 factor, region 1.2 TRQ2_0403 PF04542 Sigma-70 region 2 TRQ2_0403 PF03979 Sigma-70 factor, region 1.1 TRQ2_0404 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0404 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_0405 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0406 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0407 PF00005 ABC transporter TRQ2_0407 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0409 PF02911 Formyl transferase, C-terminal domain TRQ2_0409 PF00551 Formyl transferase TRQ2_0410 PF16360 GTP-binding GTPase Middle Region TRQ2_0410 PF13167 GTP-binding GTPase N-terminal TRQ2_0410 PF01926 50S ribosome-binding GTPase TRQ2_0411 PF17209 Hfq protein TRQ2_0413 PF04445 Putative SAM-dependent methyltransferase TRQ2_0415 PF07724 AAA domain (Cdc48 subfamily) TRQ2_0415 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_0415 PF10431 C-terminal, D2-small domain, of ClpB protein TRQ2_0416 PF00227 Proteasome subunit TRQ2_0422 PF04055 Radical SAM superfamily TRQ2_0422 PF16199 Radical_SAM C-terminal domain TRQ2_0423 PF04073 Aminoacyl-tRNA editing domain TRQ2_0423 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRQ2_0423 PF03129 Anticodon binding domain TRQ2_0424 PF13335 Magnesium chelatase, subunit ChlI C-terminal TRQ2_0424 PF01078 Magnesium chelatase, subunit ChlI TRQ2_0426 PF03167 Uracil DNA glycosylase superfamily TRQ2_0428 PF16363 GDP-mannose 4,6 dehydratase TRQ2_0429 PF01661 Macro domain TRQ2_0429 PF16193 AAA C-terminal domain TRQ2_0429 PF05496 Holliday junction DNA helicase RuvB P-loop domain TRQ2_0429 PF12002 MgsA AAA+ ATPase C terminal TRQ2_0430 PF00118 TCP-1/cpn60 chaperonin family TRQ2_0431 PF00166 Chaperonin 10 Kd subunit TRQ2_0432 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0433 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0433 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_0434 PF00005 ABC transporter TRQ2_0434 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0435 PF00005 ABC transporter TRQ2_0437 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0437 PF00005 ABC transporter TRQ2_0439 PF14579 Helix-hairpin-helix motif TRQ2_0439 PF07733 Bacterial DNA polymerase III alpha NTPase domain TRQ2_0439 PF11490 DNA polymerase III polC-type N-terminus II TRQ2_0439 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRQ2_0439 PF02811 PHP domain TRQ2_0439 PF00929 Exonuclease TRQ2_0439 PF01336 OB-fold nucleic acid binding domain TRQ2_0440 PF13638 PIN domain TRQ2_0440 PF02562 PhoH-like protein TRQ2_0441 PF04079 Segregation and condensation complex subunit ScpB TRQ2_0442 PF02616 Segregation and condensation protein ScpA TRQ2_0443 PF00579 tRNA synthetases class I (W and Y) TRQ2_0445 PF02146 Sir2 family TRQ2_0446 PF00196 Bacterial regulatory proteins, luxR family TRQ2_0447 PF17827 PrmC N-terminal domain TRQ2_0447 PF05175 Methyltransferase small domain TRQ2_0448 PF01883 Iron-sulfur cluster assembly protein TRQ2_0449 PF01910 Thiamine-binding protein TRQ2_0450 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0451 PF09084 NMT1/THI5 like TRQ2_0452 PF00005 ABC transporter TRQ2_0455 PF00005 ABC transporter TRQ2_0455 PF17760 UvrA interaction domain TRQ2_0455 PF17755 UvrA DNA-binding domain TRQ2_0457 PF01479 S4 domain TRQ2_0457 PF00579 tRNA synthetases class I (W and Y) TRQ2_0458 PF00395 S-layer homology domain TRQ2_0460 PF00857 Isochorismatase family TRQ2_0462 PF01680 SOR/SNZ family TRQ2_0463 PF01174 SNO glutamine amidotransferase family TRQ2_0467 PF00486 Transcriptional regulatory protein, C terminal TRQ2_0467 PF00072 Response regulator receiver domain TRQ2_0469 PF01709 Transcriptional regulator TRQ2_0471 PF03705 CheR methyltransferase, all-alpha domain TRQ2_0471 PF01739 CheR methyltransferase, SAM binding domain TRQ2_0472 PF01252 Signal peptidase (SPase) II TRQ2_0473 PF01479 S4 domain TRQ2_0473 PF00849 RNA pseudouridylate synthase TRQ2_0474 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRQ2_0474 PF14579 Helix-hairpin-helix motif TRQ2_0474 PF07733 Bacterial DNA polymerase III alpha NTPase domain TRQ2_0475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0476 PF05000 RNA polymerase Rpb1, domain 4 TRQ2_0476 PF00623 RNA polymerase Rpb1, domain 2 TRQ2_0476 PF04983 RNA polymerase Rpb1, domain 3 TRQ2_0476 PF04998 RNA polymerase Rpb1, domain 5 TRQ2_0476 PF04997 RNA polymerase Rpb1, domain 1 TRQ2_0477 PF04563 RNA polymerase beta subunit TRQ2_0477 PF04565 RNA polymerase Rpb2, domain 3 TRQ2_0477 PF04560 RNA polymerase Rpb2, domain 7 TRQ2_0477 PF00562 RNA polymerase Rpb2, domain 6 TRQ2_0477 PF10385 RNA polymerase beta subunit external 1 domain TRQ2_0478 PF00542 Ribosomal protein L7/L12 C-terminal domain TRQ2_0478 PF16320 Ribosomal protein L7/L12 dimerisation domain TRQ2_0479 PF00466 Ribosomal protein L10 TRQ2_0480 PF00687 Ribosomal protein L1p/L10e family TRQ2_0481 PF03946 Ribosomal protein L11, N-terminal domain TRQ2_0481 PF00298 Ribosomal protein L11, RNA binding domain TRQ2_0482 PF02357 Transcription termination factor nusG TRQ2_0482 PF18298 NusG additional domain TRQ2_0482 PF00467 KOW motif TRQ2_0483 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TRQ2_0484 PF00471 Ribosomal protein L33 TRQ2_0486 PF02511 Thymidylate synthase complementing protein TRQ2_0487 PF07244 Surface antigen variable number repeat TRQ2_0487 PF01103 Surface antigen TRQ2_0488 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TRQ2_0488 PF02222 ATP-grasp domain TRQ2_0489 PF00731 AIR carboxylase TRQ2_0491 PF00206 Lyase TRQ2_0491 PF10415 Fumarase C C-terminus TRQ2_0492 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TRQ2_0492 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TRQ2_0496 PF00392 Bacterial regulatory proteins, gntR family TRQ2_0496 PF07729 FCD domain TRQ2_0497 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TRQ2_0497 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TRQ2_0498 PF00295 Glycosyl hydrolases family 28 TRQ2_0499 PF08240 Alcohol dehydrogenase GroES-like domain TRQ2_0499 PF00107 Zinc-binding dehydrogenase TRQ2_0500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0501 PF01095 Pectinesterase TRQ2_0502 PF00933 Glycosyl hydrolase family 3 N terminal domain TRQ2_0502 PF14310 Fibronectin type III-like domain TRQ2_0502 PF01915 Glycosyl hydrolase family 3 C-terminal domain TRQ2_0503 PF01738 Dienelactone hydrolase family TRQ2_0504 PF05448 Acetyl xylan esterase (AXE1) TRQ2_0505 PF02056 Family 4 glycosyl hydrolase TRQ2_0505 PF11975 Family 4 glycosyl hydrolase C-terminal domain TRQ2_0506 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0506 PF00005 ABC transporter TRQ2_0507 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0507 PF00005 ABC transporter TRQ2_0508 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_0508 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0509 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0511 PF00544 Pectate lyase TRQ2_0513 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0514 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRQ2_0516 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TRQ2_0522 PF00465 Iron-containing alcohol dehydrogenase TRQ2_0525 PF01551 Peptidase family M23 TRQ2_0525 PF04225 Opacity-associated protein A LysM-like domain TRQ2_0526 PF01339 CheB methylesterase TRQ2_0526 PF00072 Response regulator receiver domain TRQ2_0529 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRQ2_0531 PF00543 Nitrogen regulatory protein P-II TRQ2_0532 PF00909 Ammonium Transporter Family TRQ2_0533 PF00265 Thymidine kinase TRQ2_0534 PF00672 HAMP domain TRQ2_0534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_0534 PF00512 His Kinase A (phospho-acceptor) domain TRQ2_0535 PF00486 Transcriptional regulatory protein, C terminal TRQ2_0535 PF00072 Response regulator receiver domain TRQ2_0536 PF00310 Glutamine amidotransferases class-II TRQ2_0537 PF01645 Conserved region in glutamate synthase TRQ2_0537 PF13187 4Fe-4S dicluster domain TRQ2_0538 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TRQ2_0538 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0538 PF13247 4Fe-4S dicluster domain TRQ2_0542 PF00534 Glycosyl transferases group 1 TRQ2_0543 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TRQ2_0543 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TRQ2_0544 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0544 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TRQ2_0546 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0546 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TRQ2_0547 PF14815 NUDIX domain TRQ2_0547 PF00730 HhH-GPD superfamily base excision DNA repair protein TRQ2_0547 PF00633 Helix-hairpin-helix motif TRQ2_0548 PF00881 Nitroreductase family TRQ2_0550 PF03477 ATP cone domain TRQ2_0550 PF13597 Anaerobic ribonucleoside-triphosphate reductase TRQ2_0551 PF00881 Nitroreductase family TRQ2_0554 PF00005 ABC transporter TRQ2_0555 PF01925 Sulfite exporter TauE/SafE TRQ2_0556 PF06130 Phosphate propanoyltransferase TRQ2_0557 PF00011 Hsp20/alpha crystallin family TRQ2_0558 PF00012 Hsp70 protein TRQ2_0559 PF00873 AcrB/AcrD/AcrF family TRQ2_0560 PF01316 Arginine repressor, DNA binding domain TRQ2_0560 PF02863 Arginine repressor, C-terminal domain TRQ2_0561 PF06745 KaiC TRQ2_0564 PF02743 Cache domain TRQ2_0564 PF00672 HAMP domain TRQ2_0564 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRQ2_0566 PF10576 Iron-sulfur binding domain of endonuclease III TRQ2_0566 PF00633 Helix-hairpin-helix motif TRQ2_0566 PF00730 HhH-GPD superfamily base excision DNA repair protein TRQ2_0567 PF02127 Aminopeptidase I zinc metalloprotease (M18) TRQ2_0568 PF09178 Domain of unknown function (DUF1945) TRQ2_0568 PF00128 Alpha amylase, catalytic domain TRQ2_0570 PF01261 Xylose isomerase-like TIM barrel TRQ2_0572 PF03819 MazG nucleotide pyrophosphohydrolase domain TRQ2_0576 PF00781 Diacylglycerol kinase catalytic domain TRQ2_0578 PF00465 Iron-containing alcohol dehydrogenase TRQ2_0579 PF00291 Pyridoxal-phosphate dependent enzyme TRQ2_0579 PF13291 ACT domain TRQ2_0582 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TRQ2_0583 PF00005 ABC transporter TRQ2_0584 PF00005 ABC transporter TRQ2_0584 PF02687 FtsX-like permease family TRQ2_0584 PF12704 MacB-like periplasmic core domain TRQ2_0586 PF01220 Dehydroquinase class II TRQ2_0587 PF01202 Shikimate kinase TRQ2_0587 PF01761 3-dehydroquinate synthase TRQ2_0588 PF01264 Chorismate synthase TRQ2_0589 PF08501 Shikimate dehydrogenase substrate binding domain TRQ2_0589 PF01488 Shikimate / quinate 5-dehydrogenase TRQ2_0590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TRQ2_0592 PF18152 DAHP synthase ferredoxin-like domain TRQ2_0592 PF00793 DAHP synthetase I family TRQ2_0596 PF08497 Radical SAM N-terminal TRQ2_0596 PF04055 Radical SAM superfamily TRQ2_0596 PF11842 Domain of unknown function (DUF3362) TRQ2_0597 PF12146 Serine aminopeptidase, S33 TRQ2_0597 PF13026 Protein of unknown function (DUF3887) TRQ2_0599 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TRQ2_0600 PF01180 Dihydroorotate dehydrogenase TRQ2_0601 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TRQ2_0602 PF00156 Phosphoribosyl transferase domain TRQ2_0603 PF07969 Amidohydrolase family TRQ2_0605 PF01555 DNA methylase TRQ2_0606 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TRQ2_0606 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TRQ2_0607 PF01418 Helix-turn-helix domain, rpiR family TRQ2_0607 PF01380 SIS domain TRQ2_0609 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TRQ2_0611 PF03480 Bacterial extracellular solute-binding protein, family 7 TRQ2_0614 PF00403 Heavy-metal-associated domain TRQ2_0618 PF00248 Aldo/keto reductase family TRQ2_0619 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TRQ2_0619 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TRQ2_0621 PF02449 Beta-galactosidase TRQ2_0621 PF08532 Beta-galactosidase trimerisation domain TRQ2_0621 PF08533 Beta-galactosidase C-terminal domain TRQ2_0622 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0623 PF01055 Glycosyl hydrolases family 31 TRQ2_0623 PF13802 Galactose mutarotase-like TRQ2_0626 PF00942 Cellulose binding domain TRQ2_0626 PF03442 Carbohydrate binding domain X2 TRQ2_0627 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0627 PF00005 ABC transporter TRQ2_0628 PF00005 ABC transporter TRQ2_0628 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0629 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0629 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_0630 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0632 PF00356 Bacterial regulatory proteins, lacI family TRQ2_0633 PF16912 Glucose dehydrogenase C-terminus TRQ2_0633 PF08240 Alcohol dehydrogenase GroES-like domain TRQ2_0635 PF00294 pfkB family carbohydrate kinase TRQ2_0636 PF00923 Transaldolase/Fructose-6-phosphate aldolase TRQ2_0637 PF00391 PEP-utilising enzyme, mobile domain TRQ2_0637 PF02896 PEP-utilising enzyme, TIM barrel domain TRQ2_0637 PF05524 PEP-utilising enzyme, N-terminal TRQ2_0638 PF00381 PTS HPr component phosphorylation site TRQ2_0639 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TRQ2_0639 PF02378 Phosphotransferase system, EIIC TRQ2_0640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TRQ2_0640 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TRQ2_0641 PF00294 pfkB family carbohydrate kinase TRQ2_0642 PF08220 DeoR-like helix-turn-helix domain TRQ2_0642 PF00455 DeoR C terminal sensor domain TRQ2_0643 PF00696 Amino acid kinase family TRQ2_0643 PF01472 PUA domain TRQ2_0644 PF00171 Aldehyde dehydrogenase family TRQ2_0645 PF00694 Aconitase C-terminal domain TRQ2_0646 PF00330 Aconitase family (aconitate hydratase) TRQ2_0647 PF00285 Citrate synthase, C-terminal domain TRQ2_0648 PF00365 Phosphofructokinase TRQ2_0649 PF00664 ABC transporter transmembrane region TRQ2_0649 PF00005 ABC transporter TRQ2_0650 PF00005 ABC transporter TRQ2_0650 PF00664 ABC transporter transmembrane region TRQ2_0652 PF13685 Iron-containing alcohol dehydrogenase TRQ2_0653 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TRQ2_0653 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TRQ2_0654 PF00596 Class II Aldolase and Adducin N-terminal domain TRQ2_0655 PF01263 Aldose 1-epimerase TRQ2_0656 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TRQ2_0658 PF02018 Carbohydrate binding domain TRQ2_0658 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TRQ2_0659 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0660 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0662 PF16369 C-terminal lipocalin-like domain TRQ2_0662 PF04616 Glycosyl hydrolases family 43 TRQ2_0664 PF04616 Glycosyl hydrolases family 43 TRQ2_0664 PF16369 C-terminal lipocalin-like domain TRQ2_0669 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0670 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0672 PF02610 L-arabinose isomerase TRQ2_0672 PF11762 L-arabinose isomerase C-terminal domain TRQ2_0673 PF00392 Bacterial regulatory proteins, gntR family TRQ2_0674 PF00871 Acetokinase family TRQ2_0675 PF01116 Fructose-bisphosphate aldolase class-II TRQ2_0676 PF00391 PEP-utilising enzyme, mobile domain TRQ2_0676 PF02896 PEP-utilising enzyme, TIM barrel domain TRQ2_0676 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TRQ2_0678 PF02574 Homocysteine S-methyltransferase TRQ2_0678 PF02219 Methylenetetrahydrofolate reductase TRQ2_0680 PF02310 B12 binding domain TRQ2_0680 PF02607 B12 binding domain TRQ2_0680 PF02965 Vitamin B12 dependent methionine synthase, activation domain TRQ2_0680 PF00809 Pterin binding enzyme TRQ2_0680 PF02574 Homocysteine S-methyltransferase TRQ2_0681 PF01926 50S ribosome-binding GTPase TRQ2_0681 PF10396 GTP-binding protein TrmE N-terminus TRQ2_0681 PF12631 MnmE helical domain TRQ2_0682 PF00216 Bacterial DNA-binding protein TRQ2_0683 PF01541 GIY-YIG catalytic domain TRQ2_0683 PF02151 UvrB/uvrC motif TRQ2_0683 PF08459 UvrC Helix-hairpin-helix N-terminal TRQ2_0684 PF00849 RNA pseudouridylate synthase TRQ2_0684 PF01479 S4 domain TRQ2_0685 PF01134 Glucose inhibited division protein A TRQ2_0685 PF13932 GidA associated domain TRQ2_0686 PF02767 DNA polymerase III beta subunit, central domain TRQ2_0686 PF02768 DNA polymerase III beta subunit, C-terminal domain TRQ2_0686 PF00712 DNA polymerase III beta subunit, N-terminal domain TRQ2_0687 PF01384 Phosphate transporter family TRQ2_0689 PF07478 D-ala D-ala ligase C-terminus TRQ2_0689 PF01820 D-ala D-ala ligase N-terminus TRQ2_0690 PF01751 Toprim domain TRQ2_0690 PF01131 DNA topoisomerase TRQ2_0693 PF00830 Ribosomal L28 family TRQ2_0694 PF01668 SmpB protein TRQ2_0695 PF02021 Uncharacterised protein family UPF0102 TRQ2_0696 PF02686 Glu-tRNAGln amidotransferase C subunit TRQ2_0697 PF02599 Global regulator protein family TRQ2_0698 PF18255 DNA processing protein A sterile alpha motif domain TRQ2_0698 PF02481 DNA recombination-mediator protein A TRQ2_0699 PF04060 Putative Fe-S cluster TRQ2_0699 PF13187 4Fe-4S dicluster domain TRQ2_0700 PF02508 Rnf-Nqr subunit, membrane protein TRQ2_0701 PF02508 Rnf-Nqr subunit, membrane protein TRQ2_0703 PF03116 NQR2, RnfD, RnfE family TRQ2_0704 PF13375 RnfC Barrel sandwich hybrid domain TRQ2_0704 PF13237 4Fe-4S dicluster domain TRQ2_0704 PF10531 SLBB domain TRQ2_0704 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TRQ2_0705 PF04055 Radical SAM superfamily TRQ2_0705 PF06968 Biotin and Thiamin Synthesis associated domain TRQ2_0708 PF00132 Bacterial transferase hexapeptide (six repeats) TRQ2_0708 PF00483 Nucleotidyl transferase TRQ2_0709 PF00483 Nucleotidyl transferase TRQ2_0709 PF00132 Bacterial transferase hexapeptide (six repeats) TRQ2_0711 PF08245 Mur ligase middle domain TRQ2_0711 PF01225 Mur ligase family, catalytic domain TRQ2_0711 PF02875 Mur ligase family, glutamate ligase domain TRQ2_0712 PF01225 Mur ligase family, catalytic domain TRQ2_0712 PF02875 Mur ligase family, glutamate ligase domain TRQ2_0712 PF08245 Mur ligase middle domain TRQ2_0713 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TRQ2_0713 PF00953 Glycosyl transferase family 4 TRQ2_0714 PF08245 Mur ligase middle domain TRQ2_0715 PF01098 Cell cycle protein TRQ2_0716 PF04101 Glycosyltransferase family 28 C-terminal domain TRQ2_0716 PF03033 Glycosyltransferase family 28 N-terminal domain TRQ2_0717 PF01225 Mur ligase family, catalytic domain TRQ2_0717 PF08245 Mur ligase middle domain TRQ2_0717 PF02875 Mur ligase family, glutamate ligase domain TRQ2_0720 PF00037 4Fe-4S binding domain TRQ2_0720 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRQ2_0720 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TRQ2_0723 PF00291 Pyridoxal-phosphate dependent enzyme TRQ2_0724 PF02237 Biotin protein ligase C terminal domain TRQ2_0724 PF08279 HTH domain TRQ2_0724 PF03099 Biotin/lipoate A/B protein ligase family TRQ2_0726 PF00005 ABC transporter TRQ2_0727 PF08345 Flagellar M-ring protein C-terminal TRQ2_0727 PF01514 Secretory protein of YscJ/FliF family TRQ2_0728 PF01706 FliG C-terminal domain TRQ2_0728 PF14841 FliG middle domain TRQ2_0728 PF14842 FliG N-terminal domain TRQ2_0730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRQ2_0730 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRQ2_0730 PF18269 T3SS EscN ATPase C-terminal domain TRQ2_0731 PF05746 DALR anticodon binding domain TRQ2_0731 PF02092 Glycyl-tRNA synthetase beta subunit TRQ2_0732 PF02091 Glycyl-tRNA synthetase alpha subunit TRQ2_0733 PF01042 Endoribonuclease L-PSP TRQ2_0734 PF02347 Glycine cleavage system P-protein TRQ2_0735 PF02347 Glycine cleavage system P-protein TRQ2_0736 PF01597 Glycine cleavage H-protein TRQ2_0737 PF01571 Aminomethyltransferase folate-binding domain TRQ2_0737 PF08669 Glycine cleavage T-protein C-terminal barrel domain TRQ2_0739 PF00365 Phosphofructokinase TRQ2_0740 PF00224 Pyruvate kinase, barrel domain TRQ2_0740 PF02887 Pyruvate kinase, alpha/beta domain TRQ2_0743 PF00270 DEAD/DEAH box helicase TRQ2_0743 PF00271 Helicase conserved C-terminal domain TRQ2_0743 PF17191 RecG wedge domain TRQ2_0744 PF00005 ABC transporter TRQ2_0747 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TRQ2_0747 PF02906 Iron only hydrogenase large subunit, C-terminal domain TRQ2_0747 PF00037 4Fe-4S binding domain TRQ2_0747 PF02256 Iron hydrogenase small subunit TRQ2_0748 PF02457 DisA bacterial checkpoint controller nucleotide-binding TRQ2_0748 PF00633 Helix-hairpin-helix motif TRQ2_0748 PF10635 DisA bacterial checkpoint controller linker region TRQ2_0749 PF18073 Rubredoxin metal binding domain TRQ2_0750 PF02861 Clp amino terminal domain, pathogenicity island component TRQ2_0750 PF10431 C-terminal, D2-small domain, of ClpB protein TRQ2_0750 PF17871 AAA lid domain TRQ2_0750 PF07724 AAA domain (Cdc48 subfamily) TRQ2_0750 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_0751 PF01171 PP-loop family TRQ2_0753 PF02541 Ppx/GppA phosphatase family TRQ2_0754 PF00005 ABC transporter TRQ2_0755 PF03649 Uncharacterised protein family (UPF0014) TRQ2_0756 PF04232 Stage V sporulation protein S (SpoVS) TRQ2_0757 PF00005 ABC transporter TRQ2_0758 PF01032 FecCD transport family TRQ2_0760 PF01980 tRNA-methyltransferase O TRQ2_0761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_0761 PF00072 Response regulator receiver domain TRQ2_0761 PF09308 LuxQ, periplasmic TRQ2_0761 PF00512 His Kinase A (phospho-acceptor) domain TRQ2_0762 PF01966 HD domain TRQ2_0762 PF00072 Response regulator receiver domain TRQ2_0764 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TRQ2_0764 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TRQ2_0764 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TRQ2_0764 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TRQ2_0765 PF00795 Carbon-nitrogen hydrolase TRQ2_0765 PF02540 NAD synthase TRQ2_0766 PF01938 TRAM domain TRQ2_0766 PF00919 Uncharacterized protein family UPF0004 TRQ2_0766 PF04055 Radical SAM superfamily TRQ2_0770 PF04851 Type III restriction enzyme, res subunit TRQ2_0770 PF18074 Primosomal protein N C-terminal domain TRQ2_0770 PF17764 3′ DNA-binding domain (3′BD) TRQ2_0770 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TRQ2_0771 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TRQ2_0771 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TRQ2_0773 PF00550 Phosphopantetheine attachment site TRQ2_0774 PF03030 Inorganic H+ pyrophosphatase TRQ2_0775 PF17915 Reverse gyrase zinc finger TRQ2_0775 PF01751 Toprim domain TRQ2_0775 PF01131 DNA topoisomerase TRQ2_0775 PF00270 DEAD/DEAH box helicase TRQ2_0776 PF05221 S-adenosyl-L-homocysteine hydrolase TRQ2_0776 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TRQ2_0779 PF02629 CoA binding domain TRQ2_0779 PF06971 Putative DNA-binding protein N-terminus TRQ2_0780 PF08264 Anticodon-binding domain of tRNA TRQ2_0780 PF00133 tRNA synthetases class I (I, L, M and V) TRQ2_0780 PF13603 Leucyl-tRNA synthetase, Domain 2 TRQ2_0780 PF09334 tRNA synthetases class I (M) TRQ2_0781 PF01676 Metalloenzyme superfamily TRQ2_0782 PF02875 Mur ligase family, glutamate ligase domain TRQ2_0782 PF08245 Mur ligase middle domain TRQ2_0783 PF01330 RuvA N terminal domain TRQ2_0783 PF07499 RuvA, C-terminal domain TRQ2_0787 PF00348 Polyprenyl synthetase TRQ2_0789 PF01725 Ham1 family TRQ2_0790 PF01790 Prolipoprotein diacylglyceryl transferase TRQ2_0793 PF00245 Alkaline phosphatase TRQ2_0794 PF01817 Chorismate mutase type II TRQ2_0794 PF00800 Prephenate dehydratase TRQ2_0794 PF01842 ACT domain TRQ2_0798 PF01783 Ribosomal L32p protein family TRQ2_0799 PF02504 Fatty acid synthesis protein TRQ2_0800 PF01380 SIS domain TRQ2_0802 PF10431 C-terminal, D2-small domain, of ClpB protein TRQ2_0802 PF07724 AAA domain (Cdc48 subfamily) TRQ2_0802 PF06689 ClpX C4-type zinc finger TRQ2_0803 PF00814 Glycoprotease family TRQ2_0805 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_0805 PF00072 Response regulator receiver domain TRQ2_0806 PF00425 chorismate binding enzyme TRQ2_0806 PF04715 Anthranilate synthase component I, N terminal region TRQ2_0807 PF00117 Glutamine amidotransferase class-I TRQ2_0807 PF02885 Glycosyl transferase family, helical bundle domain TRQ2_0807 PF00591 Glycosyl transferase family, a/b domain TRQ2_0808 PF00218 Indole-3-glycerol phosphate synthase TRQ2_0809 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TRQ2_0810 PF00291 Pyridoxal-phosphate dependent enzyme TRQ2_0811 PF00290 Tryptophan synthase alpha chain TRQ2_0812 PF04055 Radical SAM superfamily TRQ2_0814 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_0815 PF00857 Isochorismatase family TRQ2_0816 PF00669 Bacterial flagellin N-terminal helical region TRQ2_0816 PF00700 Bacterial flagellin C-terminal helical region TRQ2_0817 PF07690 Major Facilitator Superfamily TRQ2_0819 PF00682 HMGL-like TRQ2_0819 PF00364 Biotin-requiring enzyme TRQ2_0819 PF02436 Conserved carboxylase domain TRQ2_0821 PF00072 Response regulator receiver domain TRQ2_0821 PF00486 Transcriptional regulatory protein, C terminal TRQ2_0822 PF00950 ABC 3 transport family TRQ2_0823 PF00005 ABC transporter TRQ2_0824 PF01297 Zinc-uptake complex component A periplasmic TRQ2_0827 PF00881 Nitroreductase family TRQ2_0829 PF02867 Ribonucleotide reductase, barrel domain TRQ2_0829 PF03477 ATP cone domain TRQ2_0829 PF00317 Ribonucleotide reductase, all-alpha domain TRQ2_0831 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TRQ2_0831 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TRQ2_0832 PF00005 ABC transporter TRQ2_0834 PF00457 Glycosyl hydrolases family 11 TRQ2_0834 PF01522 Polysaccharide deacetylase TRQ2_0834 PF03422 Carbohydrate binding module (family 6) TRQ2_0835 PF02653 Branched-chain amino acid transport system / permease component TRQ2_0836 PF00465 Iron-containing alcohol dehydrogenase TRQ2_0837 PF01325 Iron dependent repressor, N-terminal DNA binding domain TRQ2_0837 PF00480 ROK family TRQ2_0839 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TRQ2_0847 PF00533 BRCA1 C Terminus (BRCT) domain TRQ2_0847 PF01653 NAD-dependent DNA ligase adenylation domain TRQ2_0847 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TRQ2_0847 PF12826 Helix-hairpin-helix motif TRQ2_0847 PF03120 NAD-dependent DNA ligase OB-fold domain TRQ2_0849 PF09269 Domain of unknown function (DUF1967) TRQ2_0849 PF01926 50S ribosome-binding GTPase TRQ2_0849 PF01018 GTP1/OBG TRQ2_0850 PF01467 Cytidylyltransferase-like TRQ2_0851 PF01207 Dihydrouridine synthase (Dus) TRQ2_0852 PF02915 Rubrerythrin TRQ2_0853 PF00482 Type II secretion system (T2SS), protein F TRQ2_0859 PF03958 Bacterial type II/III secretion system short domain TRQ2_0859 PF11741 AMIN domain TRQ2_0859 PF00263 Bacterial type II and III secretion system protein TRQ2_0859 PF07660 Secretin and TonB N terminus short domain TRQ2_0860 PF01875 Memo-like protein TRQ2_0861 PF03023 Lipid II flippase MurJ TRQ2_0864 PF07196 Flagellin hook IN motif TRQ2_0864 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TRQ2_0865 PF00669 Bacterial flagellin N-terminal helical region TRQ2_0866 PF02623 FliW protein TRQ2_0867 PF01497 Periplasmic binding protein TRQ2_0868 PF01032 FecCD transport family TRQ2_0869 PF00005 ABC transporter TRQ2_0870 PF05448 Acetyl xylan esterase (AXE1) TRQ2_0871 PF14310 Fibronectin type III-like domain TRQ2_0871 PF01915 Glycosyl hydrolase family 3 C-terminal domain TRQ2_0871 PF00933 Glycosyl hydrolase family 3 N terminal domain TRQ2_0872 PF00005 ABC transporter TRQ2_0872 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0873 PF00005 ABC transporter TRQ2_0873 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0874 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_0874 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0875 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0876 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0877 PF00331 Glycosyl hydrolase family 10 TRQ2_0878 PF03786 D-mannonate dehydratase (UxuA) TRQ2_0879 PF01232 Mannitol dehydrogenase Rossmann domain TRQ2_0879 PF08125 Mannitol dehydrogenase C-terminal domain TRQ2_0881 PF01081 KDPG and KHG aldolase TRQ2_0882 PF09339 IclR helix-turn-helix domain TRQ2_0882 PF01614 Bacterial transcriptional regulator TRQ2_0883 PF02614 Glucuronate isomerase TRQ2_0885 PF06452 Carbohydrate family 9 binding domain-like TRQ2_0885 PF02018 Carbohydrate binding domain TRQ2_0885 PF00331 Glycosyl hydrolase family 10 TRQ2_0886 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0887 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_0887 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0888 PF00005 ABC transporter TRQ2_0888 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0889 PF00005 ABC transporter TRQ2_0889 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_0891 PF07477 Glycosyl hydrolase family 67 C-terminus TRQ2_0891 PF07488 Glycosyl hydrolase family 67 middle domain TRQ2_0891 PF03648 Glycosyl hydrolase family 67 N-terminus TRQ2_0895 PF07664 Ferrous iron transport protein B C terminus TRQ2_0895 PF04023 FeoA domain TRQ2_0895 PF02421 Ferrous iron transport protein B TRQ2_0895 PF07670 Nucleoside recognition TRQ2_0895 PF17910 FeoB cytosolic helical domain TRQ2_0897 PF04015 Domain of unknown function (DUF362) TRQ2_0899 PF12323 Helix-turn-helix domain TRQ2_0899 PF01385 Probable transposase TRQ2_0899 PF07282 Putative transposase DNA-binding domain TRQ2_0902 PF00005 ABC transporter TRQ2_0902 PF00664 ABC transporter transmembrane region TRQ2_0903 PF01321 Creatinase/Prolidase N-terminal domain TRQ2_0903 PF00557 Metallopeptidase family M24 TRQ2_0904 PF02152 Dihydroneopterin aldolase TRQ2_0904 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TRQ2_0905 PF00809 Pterin binding enzyme TRQ2_0906 PF02649 Type I GTP cyclohydrolase folE2 TRQ2_0907 PF01242 6-pyruvoyl tetrahydropterin synthase TRQ2_0908 PF01966 HD domain TRQ2_0909 PF03266 NTPase TRQ2_0913 PF00480 ROK family TRQ2_0915 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0917 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0917 PF00005 ABC transporter TRQ2_0918 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_0918 PF00005 ABC transporter TRQ2_0921 PF00722 Glycosyl hydrolases family 16 TRQ2_0922 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRQ2_0923 PF01119 DNA mismatch repair protein, C-terminal domain TRQ2_0923 PF08676 MutL C terminal dimerisation domain TRQ2_0924 PF02641 Uncharacterized ACR, COG1993 TRQ2_0925 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TRQ2_0927 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRQ2_0928 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TRQ2_0928 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TRQ2_0930 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TRQ2_0931 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRQ2_0931 PF00672 HAMP domain TRQ2_0931 PF02743 Cache domain TRQ2_0935 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TRQ2_0935 PF00037 4Fe-4S binding domain TRQ2_0935 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRQ2_0937 PF04199 Putative cyclase TRQ2_0939 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TRQ2_0939 PF13378 Enolase C-terminal domain-like TRQ2_0941 PF00149 Calcineurin-like phosphoesterase TRQ2_0941 PF02872 5'-nucleotidase, C-terminal domain TRQ2_0943 PF12850 Calcineurin-like phosphoesterase superfamily domain TRQ2_0944 PF00749 tRNA synthetases class I (E and Q), catalytic domain TRQ2_0945 PF00313 'Cold-shock' DNA-binding domain TRQ2_0946 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TRQ2_0946 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TRQ2_0947 PF01894 Uncharacterised protein family UPF0047 TRQ2_0949 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TRQ2_0950 PF05362 Lon protease (S16) C-terminal proteolytic domain TRQ2_0950 PF13654 AAA domain TRQ2_0951 PF02361 Cobalt transport protein TRQ2_0952 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TRQ2_0952 PF00056 lactate/malate dehydrogenase, NAD binding domain TRQ2_0954 PF04493 Endonuclease V TRQ2_0957 PF18693 TRAM domain TRQ2_0957 PF00919 Uncharacterized protein family UPF0004 TRQ2_0957 PF04055 Radical SAM superfamily TRQ2_0958 PF01066 CDP-alcohol phosphatidyltransferase TRQ2_0960 PF00154 recA bacterial DNA recombination protein TRQ2_0961 PF02631 RecX family TRQ2_0962 PF12072 Domain of unknown function (DUF3552) TRQ2_0962 PF00013 KH domain TRQ2_0962 PF01966 HD domain TRQ2_0968 PF06165 Glycosyltransferase family 36 TRQ2_0968 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TRQ2_0969 PF00232 Glycosyl hydrolase family 1 TRQ2_0970 PF01547 Bacterial extracellular solute-binding protein TRQ2_0971 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0972 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0973 PF13407 Periplasmic binding protein domain TRQ2_0974 PF02653 Branched-chain amino acid transport system / permease component TRQ2_0975 PF00005 ABC transporter TRQ2_0976 PF01325 Iron dependent repressor, N-terminal DNA binding domain TRQ2_0976 PF00480 ROK family TRQ2_0978 PF00128 Alpha amylase, catalytic domain TRQ2_0978 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TRQ2_0978 PF03714 Bacterial pullanase-associated domain TRQ2_0979 PF02806 Alpha amylase, C-terminal all-beta domain TRQ2_0979 PF00128 Alpha amylase, catalytic domain TRQ2_0979 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TRQ2_0983 PF00128 Alpha amylase, catalytic domain TRQ2_0984 PF01547 Bacterial extracellular solute-binding protein TRQ2_0985 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0985 PF14785 Maltose transport system permease protein MalF P2 domain TRQ2_0986 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_0987 PF00128 Alpha amylase, catalytic domain TRQ2_0988 PF11975 Family 4 glycosyl hydrolase C-terminal domain TRQ2_0988 PF02056 Family 4 glycosyl hydrolase TRQ2_0989 PF00672 HAMP domain TRQ2_0989 PF00211 Adenylate and Guanylate cyclase catalytic domain TRQ2_0989 PF02743 Cache domain TRQ2_0992 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_0992 PF00072 Response regulator receiver domain TRQ2_0993 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TRQ2_0993 PF01872 RibD C-terminal domain TRQ2_0994 PF00677 Lumazine binding domain TRQ2_0995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TRQ2_0995 PF00925 GTP cyclohydrolase II TRQ2_0996 PF00885 6,7-dimethyl-8-ribityllumazine synthase TRQ2_0998 PF01145 SPFH domain / Band 7 family TRQ2_0999 PF01145 SPFH domain / Band 7 family TRQ2_0999 PF12221 Bacterial membrane protein N terminal TRQ2_1001 PF00117 Glutamine amidotransferase class-I TRQ2_1001 PF00958 GMP synthase C terminal domain TRQ2_1001 PF02568 Thiamine biosynthesis protein (ThiI) TRQ2_1003 PF02417 Chromate transporter TRQ2_1004 PF10458 Valyl tRNA synthetase tRNA binding arm TRQ2_1004 PF08264 Anticodon-binding domain of tRNA TRQ2_1004 PF00133 tRNA synthetases class I (I, L, M and V) TRQ2_1009 PF18211 Csm1 subunit domain B TRQ2_1011 PF03787 RAMP superfamily TRQ2_1013 PF03787 RAMP superfamily TRQ2_1017 PF00226 DnaJ domain TRQ2_1017 PF00684 DnaJ central domain TRQ2_1017 PF01556 DnaJ C terminal domain TRQ2_1021 PF18019 HD domain TRQ2_1021 PF18395 Cas3 C-terminal domain TRQ2_1021 PF00270 DEAD/DEAH box helicase TRQ2_1023 PF01867 CRISPR associated protein Cas1 TRQ2_1024 PF09827 CRISPR associated protein Cas2 TRQ2_1026 PF00534 Glycosyl transferases group 1 TRQ2_1029 PF09701 CRISPR-associated protein (Cas_Cmr5) TRQ2_1034 PF00563 EAL domain TRQ2_1034 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_1034 PF03707 Bacterial signalling protein N terminal repeat TRQ2_1040 PF00202 Aminotransferase class-III TRQ2_1041 PF00696 Amino acid kinase family TRQ2_1042 PF01960 ArgJ family TRQ2_1043 PF02774 Semialdehyde dehydrogenase, dimerisation domain TRQ2_1043 PF01118 Semialdehyde dehydrogenase, NAD binding domain TRQ2_1044 PF00206 Lyase TRQ2_1045 PF00764 Arginosuccinate synthase TRQ2_1046 PF02576 RimP N-terminal domain TRQ2_1046 PF17384 RimP C-terminal SH3 domain TRQ2_1047 PF13184 NusA-like KH domain TRQ2_1047 PF08529 NusA N-terminal domain TRQ2_1047 PF00575 S1 RNA binding domain TRQ2_1048 PF01475 Ferric uptake regulator family TRQ2_1050 PF01676 Metalloenzyme superfamily TRQ2_1050 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TRQ2_1052 PF02734 DAK2 domain TRQ2_1052 PF13684 Dihydroxyacetone kinase family TRQ2_1054 PF02779 Transketolase, pyrimidine binding domain TRQ2_1054 PF02780 Transketolase, C-terminal domain TRQ2_1054 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TRQ2_1055 PF02609 Exonuclease VII small subunit TRQ2_1056 PF13742 OB-fold nucleic acid binding domain TRQ2_1056 PF02601 Exonuclease VII, large subunit TRQ2_1057 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TRQ2_1057 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TRQ2_1058 PF01268 Formate--tetrahydrofolate ligase TRQ2_1059 PF01029 NusB family TRQ2_1061 PF09285 Elongation factor P, C-terminal TRQ2_1061 PF08207 Elongation factor P (EF-P) KOW-like domain TRQ2_1061 PF01132 Elongation factor P (EF-P) OB domain TRQ2_1062 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TRQ2_1062 PF02779 Transketolase, pyrimidine binding domain TRQ2_1062 PF02780 Transketolase, C-terminal domain TRQ2_1063 PF04851 Type III restriction enzyme, res subunit TRQ2_1063 PF02151 UvrB/uvrC motif TRQ2_1063 PF12344 Ultra-violet resistance protein B TRQ2_1063 PF00271 Helicase conserved C-terminal domain TRQ2_1063 PF17757 UvrB interaction domain TRQ2_1069 PF00871 Acetokinase family TRQ2_1070 PF01515 Phosphate acetyl/butaryl transferase TRQ2_1071 PF00871 Acetokinase family TRQ2_1075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1075 PF00005 ABC transporter TRQ2_1076 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1076 PF00005 ABC transporter TRQ2_1077 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1077 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_1078 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1079 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_1081 PF01212 Beta-eliminating lyase TRQ2_1082 PF00248 Aldo/keto reductase family TRQ2_1083 PF13344 Haloacid dehalogenase-like hydrolase TRQ2_1084 PF08032 RNA 2'-O ribose methyltransferase substrate binding TRQ2_1084 PF00588 SpoU rRNA Methylase family TRQ2_1085 PF00636 Ribonuclease III domain TRQ2_1087 PF02535 ZIP Zinc transporter TRQ2_1088 PF01048 Phosphorylase superfamily TRQ2_1089 PF00772 DnaB-like helicase N terminal domain TRQ2_1089 PF03796 DnaB-like helicase C terminal domain TRQ2_1091 PF01895 PhoU domain TRQ2_1092 PF01513 ATP-NAD kinase TRQ2_1093 PF02325 YGGT family TRQ2_1094 PF01168 Alanine racemase, N-terminal domain TRQ2_1095 PF05491 RuvB C-terminal winged helix domain TRQ2_1095 PF17864 RuvB AAA lid domain TRQ2_1095 PF05496 Holliday junction DNA helicase RuvB P-loop domain TRQ2_1097 PF02548 Ketopantoate hydroxymethyltransferase TRQ2_1099 PF01411 tRNA synthetases class II (A) TRQ2_1099 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TRQ2_1099 PF02272 DHHA1 domain TRQ2_1100 PF01813 ATP synthase subunit D TRQ2_1101 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRQ2_1101 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRQ2_1102 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRQ2_1102 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRQ2_1102 PF16886 ATPsynthase alpha/beta subunit N-term extension TRQ2_1106 PF01496 V-type ATPase 116kDa subunit family TRQ2_1111 PF01979 Amidohydrolase family TRQ2_1114 PF13673 Acetyltransferase (GNAT) domain TRQ2_1115 PF05192 MutS domain III TRQ2_1115 PF05188 MutS domain II TRQ2_1115 PF01624 MutS domain I TRQ2_1115 PF05190 MutS family domain IV TRQ2_1115 PF00488 MutS domain V TRQ2_1116 PF00834 Ribulose-phosphate 3 epimerase family TRQ2_1117 PF03193 RsgA GTPase TRQ2_1117 PF16745 RsgA N-terminal domain TRQ2_1119 PF04055 Radical SAM superfamily TRQ2_1120 PF01565 FAD binding domain TRQ2_1120 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TRQ2_1121 PF09186 Domain of unknown function (DUF1949) TRQ2_1121 PF01205 Uncharacterized protein family UPF0029 TRQ2_1124 PF03668 P-loop ATPase protein family TRQ2_1125 PF01933 Uncharacterised protein family UPF0052 TRQ2_1126 PF14527 WhiA LAGLIDADG-like domain TRQ2_1126 PF02650 WhiA C-terminal HTH domain TRQ2_1128 PF01272 Transcription elongation factor, GreA/GreB, C-term TRQ2_1128 PF03449 Transcription elongation factor, N-terminal TRQ2_1129 PF00152 tRNA synthetases class II (D, K and N) TRQ2_1129 PF01336 OB-fold nucleic acid binding domain TRQ2_1131 PF00884 Sulfatase TRQ2_1137 PF10672 S-adenosylmethionine-dependent methyltransferase TRQ2_1137 PF17785 PUA-like domain TRQ2_1138 PF01478 Type IV leader peptidase family TRQ2_1138 PF06750 Bacterial Peptidase A24 N-terminal domain TRQ2_1140 PF02926 THUMP domain TRQ2_1140 PF02568 Thiamine biosynthesis protein (ThiI) TRQ2_1142 PF00266 Aminotransferase class-V TRQ2_1144 PF04025 Domain of unknown function (DUF370) TRQ2_1145 PF00625 Guanylate kinase TRQ2_1146 PF01192 RNA polymerase Rpb6 TRQ2_1147 PF04127 DNA / pantothenate metabolism flavoprotein TRQ2_1147 PF02441 Flavoprotein TRQ2_1148 PF01476 LysM domain TRQ2_1148 PF03734 L,D-transpeptidase catalytic domain TRQ2_1149 PF01138 3' exoribonuclease family, domain 1 TRQ2_1149 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TRQ2_1149 PF00013 KH domain TRQ2_1149 PF00575 S1 RNA binding domain TRQ2_1149 PF03725 3' exoribonuclease family, domain 2 TRQ2_1150 PF01197 Ribosomal protein L31 TRQ2_1151 PF00313 'Cold-shock' DNA-binding domain TRQ2_1152 PF00072 Response regulator receiver domain TRQ2_1160 PF01312 FlhB HrpN YscU SpaS Family TRQ2_1162 PF01261 Xylose isomerase-like TIM barrel TRQ2_1163 PF01546 Peptidase family M20/M25/M40 TRQ2_1163 PF07687 Peptidase dimerisation domain TRQ2_1165 PF05175 Methyltransferase small domain TRQ2_1166 PF00005 ABC transporter TRQ2_1167 PF01975 Survival protein SurE TRQ2_1168 PF01327 Polypeptide deformylase TRQ2_1171 PF00438 S-adenosylmethionine synthetase, N-terminal domain TRQ2_1171 PF02773 S-adenosylmethionine synthetase, C-terminal domain TRQ2_1171 PF02772 S-adenosylmethionine synthetase, central domain TRQ2_1172 PF01649 Ribosomal protein S20 TRQ2_1174 PF00072 Response regulator receiver domain TRQ2_1174 PF00486 Transcriptional regulatory protein, C terminal TRQ2_1175 PF00989 PAS fold TRQ2_1175 PF00512 His Kinase A (phospho-acceptor) domain TRQ2_1175 PF16736 Single Cache-like TRQ2_1175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_1176 PF02885 Glycosyl transferase family, helical bundle domain TRQ2_1176 PF00591 Glycosyl transferase family, a/b domain TRQ2_1176 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TRQ2_1178 PF00009 Elongation factor Tu GTP binding domain TRQ2_1178 PF03764 Elongation factor G, domain IV TRQ2_1178 PF00679 Elongation factor G C-terminus TRQ2_1178 PF14492 Elongation Factor G, domain II TRQ2_1179 PF16657 Maltogenic Amylase, C-terminal domain TRQ2_1179 PF00128 Alpha amylase, catalytic domain TRQ2_1179 PF02903 Alpha amylase, N-terminal ig-like domain TRQ2_1181 PF01966 HD domain TRQ2_1183 PF03885 Protein of unknown function (DUF327) TRQ2_1184 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TRQ2_1184 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TRQ2_1185 PF02445 Quinolinate synthetase A protein TRQ2_1186 PF03447 Homoserine dehydrogenase, NAD binding domain TRQ2_1186 PF01958 Domain of unknown function DUF108 TRQ2_1190 PF02082 Transcriptional regulator TRQ2_1191 PF01040 UbiA prenyltransferase family TRQ2_1193 PF01012 Electron transfer flavoprotein domain TRQ2_1194 PF01012 Electron transfer flavoprotein domain TRQ2_1194 PF00766 Electron transfer flavoprotein FAD-binding domain TRQ2_1198 PF00348 Polyprenyl synthetase TRQ2_1200 PF04055 Radical SAM superfamily TRQ2_1200 PF02310 B12 binding domain TRQ2_1202 PF02119 Flagellar P-ring protein TRQ2_1203 PF02107 Flagellar L-ring protein TRQ2_1205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TRQ2_1205 PF00460 Flagella basal body rod protein TRQ2_1206 PF00460 Flagella basal body rod protein TRQ2_1206 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TRQ2_1208 PF03652 Holliday junction resolvase TRQ2_1209 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TRQ2_1209 PF17768 RecJ OB domain TRQ2_1209 PF02272 DHHA1 domain TRQ2_1209 PF01368 DHH family TRQ2_1210 PF01966 HD domain TRQ2_1211 PF02719 Polysaccharide biosynthesis protein TRQ2_1212 PF00953 Glycosyl transferase family 4 TRQ2_1213 PF07136 Protein of unknown function (DUF1385) TRQ2_1214 PF01871 AMMECR1 TRQ2_1216 PF02424 ApbE family TRQ2_1219 PF02545 Maf-like protein TRQ2_1220 PF04002 RadC-like JAB domain TRQ2_1222 PF01791 DeoC/LacD family aldolase TRQ2_1224 PF01702 Queuine tRNA-ribosyltransferase TRQ2_1227 PF00708 Acylphosphatase TRQ2_1228 PF02978 Signal peptide binding domain TRQ2_1228 PF02881 SRP54-type protein, helical bundle domain TRQ2_1228 PF00448 SRP54-type protein, GTPase domain TRQ2_1229 PF00886 Ribosomal protein S16 TRQ2_1231 PF01782 RimM N-terminal domain TRQ2_1231 PF05239 PRC-barrel domain TRQ2_1232 PF01746 tRNA (Guanine-1)-methyltransferase TRQ2_1233 PF09936 SAM-dependent RNA methyltransferase TRQ2_1234 PF01245 Ribosomal protein L19 TRQ2_1235 PF10502 Signal peptidase, peptidase S26 TRQ2_1237 PF01416 tRNA pseudouridine synthase TRQ2_1239 PF01728 FtsJ-like methyltransferase TRQ2_1239 PF01479 S4 domain TRQ2_1241 PF07516 SecA Wing and Scaffold domain TRQ2_1241 PF01043 SecA preprotein cross-linking domain TRQ2_1241 PF00271 Helicase conserved C-terminal domain TRQ2_1241 PF07517 SecA DEAD-like domain TRQ2_1242 PF00472 RF-1 domain TRQ2_1242 PF03462 PCRF domain TRQ2_1243 PF02954 Bacterial regulatory protein, Fis family TRQ2_1243 PF00072 Response regulator receiver domain TRQ2_1243 PF00158 Sigma-54 interaction domain TRQ2_1247 PF00156 Phosphoribosyl transferase domain TRQ2_1248 PF05161 MOFRL family TRQ2_1248 PF13660 Domain of unknown function (DUF4147) TRQ2_1251 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_1253 PF00707 Translation initiation factor IF-3, C-terminal domain TRQ2_1253 PF05198 Translation initiation factor IF-3, N-terminal domain TRQ2_1254 PF01632 Ribosomal protein L35 TRQ2_1255 PF00453 Ribosomal protein L20 TRQ2_1256 PF10609 NUBPL iron-transfer P-loop NTPase TRQ2_1257 PF05230 MASE2 domain TRQ2_1257 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_1258 PF01368 DHH family TRQ2_1258 PF02272 DHHA1 domain TRQ2_1259 PF01048 Phosphorylase superfamily TRQ2_1260 PF01168 Alanine racemase, N-terminal domain TRQ2_1261 PF04542 Sigma-70 region 2 TRQ2_1261 PF08281 Sigma-70, region 4 TRQ2_1264 PF04055 Radical SAM superfamily TRQ2_1264 PF18693 TRAM domain TRQ2_1264 PF00919 Uncharacterized protein family UPF0004 TRQ2_1265 PF08279 HTH domain TRQ2_1265 PF02829 3H domain TRQ2_1266 PF07690 Major Facilitator Superfamily TRQ2_1267 PF00696 Amino acid kinase family TRQ2_1268 PF00889 Elongation factor TS TRQ2_1269 PF10150 Ribonuclease E/G family TRQ2_1269 PF00575 S1 RNA binding domain TRQ2_1270 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TRQ2_1270 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TRQ2_1271 PF02645 Uncharacterised protein, DegV family COG1307 TRQ2_1272 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TRQ2_1273 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRQ2_1273 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRQ2_1274 PF00231 ATP synthase TRQ2_1275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRQ2_1275 PF00306 ATP synthase alpha/beta chain, C terminal domain TRQ2_1275 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRQ2_1276 PF00213 ATP synthase delta (OSCP) subunit TRQ2_1277 PF00430 ATP synthase B/B' CF(0) TRQ2_1278 PF00137 ATP synthase subunit C TRQ2_1279 PF00119 ATP synthase A chain TRQ2_1282 PF13690 Chemotaxis phosphatase CheX TRQ2_1283 PF01367 5'-3' exonuclease, C-terminal SAM fold TRQ2_1283 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TRQ2_1283 PF00476 DNA polymerase family A TRQ2_1283 PF01612 3'-5' exonuclease TRQ2_1284 PF02627 Carboxymuconolactone decarboxylase family TRQ2_1285 PF03009 Glycerophosphoryl diester phosphodiesterase family TRQ2_1287 PF06421 GTP-binding protein LepA C-terminus TRQ2_1287 PF00009 Elongation factor Tu GTP binding domain TRQ2_1287 PF00679 Elongation factor G C-terminus TRQ2_1287 PF03144 Elongation factor Tu domain 2 TRQ2_1288 PF02837 Glycosyl hydrolases family 2, sugar binding domain TRQ2_1288 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TRQ2_1288 PF02929 Beta galactosidase small chain TRQ2_1288 PF16353 Domain of unknown function(DUF4981) TRQ2_1288 PF00703 Glycosyl hydrolases family 2 TRQ2_1290 PF01195 Peptidyl-tRNA hydrolase TRQ2_1291 PF14693 Ribosomal protein TL5, C-terminal domain TRQ2_1291 PF01386 Ribosomal L25p family TRQ2_1292 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TRQ2_1292 PF14572 Phosphoribosyl synthetase-associated domain TRQ2_1293 PF12804 MobA-like NTP transferase domain TRQ2_1293 PF00132 Bacterial transferase hexapeptide (six repeats) TRQ2_1293 PF14602 Hexapeptide repeat of succinyl-transferase TRQ2_1296 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TRQ2_1297 PF05362 Lon protease (S16) C-terminal proteolytic domain TRQ2_1297 PF02190 ATP-dependent protease La (LON) substrate-binding domain TRQ2_1297 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_1299 PF12320 Type 5 capsule protein repressor C-terminal domain TRQ2_1299 PF00149 Calcineurin-like phosphoesterase TRQ2_1300 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system TRQ2_1302 PF00005 ABC transporter TRQ2_1303 PF00970 Oxidoreductase FAD-binding domain TRQ2_1303 PF00175 Oxidoreductase NAD-binding domain TRQ2_1303 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TRQ2_1304 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TRQ2_1304 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_1305 PF00186 Dihydrofolate reductase TRQ2_1306 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TRQ2_1306 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TRQ2_1306 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TRQ2_1306 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TRQ2_1307 PF08244 Glycosyl hydrolases family 32 C terminal TRQ2_1307 PF00251 Glycosyl hydrolases family 32 N-terminal domain TRQ2_1308 PF00459 Inositol monophosphatase family TRQ2_1309 PF01458 Uncharacterized protein family (UPF0051) TRQ2_1310 PF00005 ABC transporter TRQ2_1311 PF01066 CDP-alcohol phosphatidyltransferase TRQ2_1311 PF00483 Nucleotidyl transferase TRQ2_1312 PF12804 MobA-like NTP transferase domain TRQ2_1312 PF00132 Bacterial transferase hexapeptide (six repeats) TRQ2_1318 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TRQ2_1318 PF00037 4Fe-4S binding domain TRQ2_1318 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRQ2_1319 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TRQ2_1319 PF00037 4Fe-4S binding domain TRQ2_1319 PF02906 Iron only hydrogenase large subunit, C-terminal domain TRQ2_1319 PF02256 Iron hydrogenase small subunit TRQ2_1320 PF06971 Putative DNA-binding protein N-terminus TRQ2_1320 PF02629 CoA binding domain TRQ2_1321 PF17200 Single Cache domain 2 TRQ2_1321 PF00672 HAMP domain TRQ2_1321 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRQ2_1322 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TRQ2_1322 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TRQ2_1323 PF04309 Glycerol-3-phosphate responsive antiterminator TRQ2_1324 PF04324 BFD-like [2Fe-2S] binding domain TRQ2_1324 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_1325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TRQ2_1325 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_1329 PF00398 Ribosomal RNA adenine dimethylase TRQ2_1330 PF03065 Glycosyl hydrolase family 57 TRQ2_1330 PF09210 Domain of unknown function (DUF1957) TRQ2_1332 PF01008 Initiation factor 2 subunit family TRQ2_1332 PF03061 Thioesterase superfamily TRQ2_1333 PF01336 OB-fold nucleic acid binding domain TRQ2_1333 PF02938 GAD domain TRQ2_1333 PF00152 tRNA synthetases class II (D, K and N) TRQ2_1334 PF01740 STAS domain TRQ2_1335 PF02224 Cytidylate kinase TRQ2_1336 PF02401 LytB protein TRQ2_1337 PF00575 S1 RNA binding domain TRQ2_1338 PF01926 50S ribosome-binding GTPase TRQ2_1338 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TRQ2_1339 PF02660 Glycerol-3-phosphate acyltransferase TRQ2_1342 PF00270 DEAD/DEAH box helicase TRQ2_1342 PF03461 TRCF domain TRQ2_1342 PF02559 CarD-like/TRCF domain TRQ2_1342 PF17757 UvrB interaction domain TRQ2_1342 PF00271 Helicase conserved C-terminal domain TRQ2_1343 PF04539 Sigma-70 region 3 TRQ2_1343 PF04542 Sigma-70 region 2 TRQ2_1343 PF03979 Sigma-70 factor, region 1.1 TRQ2_1343 PF04545 Sigma-70, region 4 TRQ2_1343 PF00140 Sigma-70 factor, region 1.2 TRQ2_1344 PF08275 DNA primase catalytic core, N-terminal domain TRQ2_1344 PF01807 CHC2 zinc finger TRQ2_1345 PF00380 Ribosomal protein S9/S16 TRQ2_1346 PF00572 Ribosomal protein L13 TRQ2_1347 PF12822 ECF transporter, substrate-specific component TRQ2_1348 PF01016 Ribosomal L27 protein TRQ2_1350 PF00829 Ribosomal prokaryotic L21 protein TRQ2_1353 PF02096 60Kd inner membrane protein TRQ2_1354 PF01809 Putative membrane protein insertion efficiency factor TRQ2_1355 PF00825 Ribonuclease P TRQ2_1356 PF00468 Ribosomal protein L34 TRQ2_1357 PF04227 Indigoidine synthase A like protein TRQ2_1358 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TRQ2_1358 PF12557 Cob(I)alamin adenosyltransferase N terminal TRQ2_1359 PF01926 50S ribosome-binding GTPase TRQ2_1360 PF01966 HD domain TRQ2_1361 PF17248 Family of unknown function (DUF5317) TRQ2_1362 PF02645 Uncharacterised protein, DegV family COG1307 TRQ2_1363 PF00480 ROK family TRQ2_1364 PF07498 Rho termination factor, N-terminal domain TRQ2_1364 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRQ2_1364 PF07497 Rho termination factor, RNA-binding domain TRQ2_1365 PF01196 Ribosomal protein L17 TRQ2_1366 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TRQ2_1366 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TRQ2_1366 PF01000 RNA polymerase Rpb3/RpoA insert domain TRQ2_1367 PF01479 S4 domain TRQ2_1367 PF00163 Ribosomal protein S4/S9 N-terminal domain TRQ2_1368 PF00411 Ribosomal protein S11 TRQ2_1369 PF00416 Ribosomal protein S13/S18 TRQ2_1370 PF00444 Ribosomal protein L36 TRQ2_1371 PF01176 Translation initiation factor 1A / IF-1 TRQ2_1372 PF00557 Metallopeptidase family M24 TRQ2_1373 PF05191 Adenylate kinase, active site lid TRQ2_1374 PF00344 SecY translocase TRQ2_1375 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TRQ2_1376 PF00327 Ribosomal protein L30p/L7e TRQ2_1377 PF03719 Ribosomal protein S5, C-terminal domain TRQ2_1377 PF00333 Ribosomal protein S5, N-terminal domain TRQ2_1378 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TRQ2_1379 PF00347 Ribosomal protein L6 TRQ2_1380 PF00410 Ribosomal protein S8 TRQ2_1381 PF00253 Ribosomal protein S14p/S29e TRQ2_1382 PF00673 ribosomal L5P family C-terminus TRQ2_1382 PF00281 Ribosomal protein L5 TRQ2_1383 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TRQ2_1383 PF00467 KOW motif TRQ2_1384 PF00238 Ribosomal protein L14p/L23e TRQ2_1385 PF00366 Ribosomal protein S17 TRQ2_1386 PF00831 Ribosomal L29 protein TRQ2_1387 PF00252 Ribosomal protein L16p/L10e TRQ2_1388 PF07650 KH domain TRQ2_1388 PF00189 Ribosomal protein S3, C-terminal domain TRQ2_1389 PF00237 Ribosomal protein L22p/L17e TRQ2_1390 PF00203 Ribosomal protein S19 TRQ2_1391 PF00181 Ribosomal Proteins L2, RNA binding domain TRQ2_1391 PF03947 Ribosomal Proteins L2, C-terminal domain TRQ2_1392 PF00276 Ribosomal protein L23 TRQ2_1393 PF00573 Ribosomal protein L4/L1 family TRQ2_1394 PF00297 Ribosomal protein L3 TRQ2_1395 PF00338 Ribosomal protein S10p/S20e TRQ2_1396 PF03144 Elongation factor Tu domain 2 TRQ2_1396 PF03143 Elongation factor Tu C-terminal domain TRQ2_1396 PF00009 Elongation factor Tu GTP binding domain TRQ2_1397 PF03764 Elongation factor G, domain IV TRQ2_1397 PF00679 Elongation factor G C-terminus TRQ2_1397 PF03144 Elongation factor Tu domain 2 TRQ2_1397 PF00009 Elongation factor Tu GTP binding domain TRQ2_1397 PF14492 Elongation Factor G, domain II TRQ2_1398 PF00177 Ribosomal protein S7p/S5e TRQ2_1399 PF00164 Ribosomal protein S12/S23 TRQ2_1401 PF02562 PhoH-like protein TRQ2_1402 PF07697 7TM-HD extracellular TRQ2_1402 PF01966 HD domain TRQ2_1402 PF07698 7TM receptor with intracellular HD hydrolase TRQ2_1403 PF02130 Uncharacterized protein family UPF0054 TRQ2_1405 PF04298 Putative neutral zinc metallopeptidase TRQ2_1406 PF01189 16S rRNA methyltransferase RsmB/F TRQ2_1406 PF01029 NusB family TRQ2_1407 PF05636 HIGH Nucleotidyl Transferase TRQ2_1410 PF01546 Peptidase family M20/M25/M40 TRQ2_1410 PF07687 Peptidase dimerisation domain TRQ2_1411 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TRQ2_1411 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TRQ2_1412 PF13840 ACT domain TRQ2_1412 PF01842 ACT domain TRQ2_1412 PF00696 Amino acid kinase family TRQ2_1413 PF14602 Hexapeptide repeat of succinyl-transferase TRQ2_1413 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal TRQ2_1413 PF00132 Bacterial transferase hexapeptide (six repeats) TRQ2_1414 PF01113 Dihydrodipicolinate reductase, N-terminus TRQ2_1414 PF05173 Dihydrodipicolinate reductase, C-terminus TRQ2_1415 PF00701 Dihydrodipicolinate synthetase family TRQ2_1416 PF01678 Diaminopimelate epimerase TRQ2_1417 PF02774 Semialdehyde dehydrogenase, dimerisation domain TRQ2_1417 PF01118 Semialdehyde dehydrogenase, NAD binding domain TRQ2_1419 PF13439 Glycosyltransferase Family 4 TRQ2_1419 PF00534 Glycosyl transferases group 1 TRQ2_1420 PF03537 Glycoside-hydrolase family GH114 TRQ2_1425 PF00534 Glycosyl transferases group 1 TRQ2_1425 PF13439 Glycosyltransferase Family 4 TRQ2_1426 PF01061 ABC-2 type transporter TRQ2_1427 PF00005 ABC transporter TRQ2_1427 PF13732 Domain of unknown function (DUF4162) TRQ2_1428 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TRQ2_1428 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TRQ2_1429 PF00266 Aminotransferase class-V TRQ2_1430 PF01765 Ribosome recycling factor TRQ2_1431 PF01255 Putative undecaprenyl diphosphate synthase TRQ2_1433 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TRQ2_1433 PF01411 tRNA synthetases class II (A) TRQ2_1433 PF02272 DHHA1 domain TRQ2_1435 PF01430 Hsp33 protein TRQ2_1436 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TRQ2_1438 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_1438 PF17871 AAA lid domain TRQ2_1438 PF02861 Clp amino terminal domain, pathogenicity island component TRQ2_1438 PF10431 C-terminal, D2-small domain, of ClpB protein TRQ2_1438 PF07724 AAA domain (Cdc48 subfamily) TRQ2_1442 PF01121 Dephospho-CoA kinase TRQ2_1444 PF00342 Phosphoglucose isomerase TRQ2_1445 PF00156 Phosphoribosyl transferase domain TRQ2_1446 PF00288 GHMP kinases N terminal domain TRQ2_1449 PF04452 RNA methyltransferase TRQ2_1450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRQ2_1450 PF02403 Seryl-tRNA synthetase N-terminal domain TRQ2_1451 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1452 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1453 PF00005 ABC transporter TRQ2_1453 PF08402 TOBE domain TRQ2_1454 PF13416 Bacterial extracellular solute-binding protein TRQ2_1455 PF00300 Histidine phosphatase superfamily (branch 1) TRQ2_1457 PF01592 NifU-like N terminal domain TRQ2_1458 PF00266 Aminotransferase class-V TRQ2_1459 PF01458 Uncharacterized protein family (UPF0051) TRQ2_1460 PF01458 Uncharacterized protein family (UPF0051) TRQ2_1461 PF00005 ABC transporter TRQ2_1463 PF02049 Flagellar hook-basal body complex protein FliE TRQ2_1464 PF00460 Flagella basal body rod protein TRQ2_1464 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TRQ2_1465 PF00460 Flagella basal body rod protein TRQ2_1466 PF03462 PCRF domain TRQ2_1466 PF00472 RF-1 domain TRQ2_1467 PF00437 Type II/IV secretion system protein TRQ2_1468 PF06827 Zinc finger found in FPG and IleRS TRQ2_1468 PF08264 Anticodon-binding domain of tRNA TRQ2_1468 PF00133 tRNA synthetases class I (I, L, M and V) TRQ2_1469 PF00072 Response regulator receiver domain TRQ2_1469 PF00486 Transcriptional regulatory protein, C terminal TRQ2_1470 PF00512 His Kinase A (phospho-acceptor) domain TRQ2_1470 PF00989 PAS fold TRQ2_1470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_1472 PF01139 tRNA-splicing ligase RtcB TRQ2_1475 PF00571 CBS domain TRQ2_1475 PF00478 IMP dehydrogenase / GMP reductase domain TRQ2_1478 PF00749 tRNA synthetases class I (E and Q), catalytic domain TRQ2_1479 PF12146 Serine aminopeptidase, S33 TRQ2_1480 PF01594 AI-2E family transporter TRQ2_1482 PF00571 CBS domain TRQ2_1482 PF00478 IMP dehydrogenase / GMP reductase domain TRQ2_1483 PF00675 Insulinase (Peptidase family M16) TRQ2_1483 PF05193 Peptidase M16 inactive domain TRQ2_1484 PF00575 S1 RNA binding domain TRQ2_1484 PF03725 3' exoribonuclease family, domain 2 TRQ2_1484 PF01138 3' exoribonuclease family, domain 1 TRQ2_1484 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TRQ2_1484 PF00013 KH domain TRQ2_1485 PF00312 Ribosomal protein S15 TRQ2_1488 PF00355 Rieske [2Fe-2S] domain TRQ2_1498 PF00005 ABC transporter TRQ2_1498 PF00664 ABC transporter transmembrane region TRQ2_1499 PF00005 ABC transporter TRQ2_1501 PF06463 Molybdenum Cofactor Synthesis C TRQ2_1501 PF04055 Radical SAM superfamily TRQ2_1502 PF13186 Iron-sulfur cluster-binding domain TRQ2_1502 PF04055 Radical SAM superfamily TRQ2_1504 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TRQ2_1506 PF00005 ABC transporter TRQ2_1506 PF00664 ABC transporter transmembrane region TRQ2_1507 PF00005 ABC transporter TRQ2_1507 PF00664 ABC transporter transmembrane region TRQ2_1510 PF13176 Tetratricopeptide repeat TRQ2_1510 PF00931 NB-ARC domain TRQ2_1511 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TRQ2_1519 PF00005 ABC transporter TRQ2_1522 PF00248 Aldo/keto reductase family TRQ2_1524 PF16123 Hydroxyacylglutathione hydrolase C-terminus TRQ2_1524 PF00753 Metallo-beta-lactamase superfamily TRQ2_1526 PF01209 ubiE/COQ5 methyltransferase family TRQ2_1527 PF10609 NUBPL iron-transfer P-loop NTPase TRQ2_1528 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TRQ2_1531 PF01018 GTP1/OBG TRQ2_1531 PF01926 50S ribosome-binding GTPase TRQ2_1531 PF04055 Radical SAM superfamily TRQ2_1532 PF07883 Cupin domain TRQ2_1533 PF01717 Cobalamin-independent synthase, Catalytic domain TRQ2_1533 PF08267 Cobalamin-independent synthase, N-terminal domain TRQ2_1535 PF00355 Rieske [2Fe-2S] domain TRQ2_1536 PF02660 Glycerol-3-phosphate acyltransferase TRQ2_1538 PF02056 Family 4 glycosyl hydrolase TRQ2_1538 PF11975 Family 4 glycosyl hydrolase C-terminal domain TRQ2_1541 PF00488 MutS domain V TRQ2_1541 PF01713 Smr domain TRQ2_1542 PF02491 SHS2 domain inserted in FTSA TRQ2_1543 PF00005 ABC transporter TRQ2_1543 PF03459 TOBE domain TRQ2_1543 PF17912 MalK OB fold domain TRQ2_1546 PF02637 GatB domain TRQ2_1546 PF02934 GatB/GatE catalytic domain TRQ2_1547 PF01425 Amidase TRQ2_1548 PF00114 Pilin (bacterial filament) TRQ2_1548 PF07963 Prokaryotic N-terminal methylation motif TRQ2_1549 PF06452 Carbohydrate family 9 binding domain-like TRQ2_1549 PF02018 Carbohydrate binding domain TRQ2_1549 PF00331 Glycosyl hydrolase family 10 TRQ2_1550 PF01053 Cys/Met metabolism PLP-dependent enzyme TRQ2_1551 PF04055 Radical SAM superfamily TRQ2_1551 PF06968 Biotin and Thiamin Synthesis associated domain TRQ2_1556 PF12849 PBP superfamily domain TRQ2_1558 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1559 PF00005 ABC transporter TRQ2_1560 PF01895 PhoU domain TRQ2_1561 PF00486 Transcriptional regulatory protein, C terminal TRQ2_1561 PF00072 Response regulator receiver domain TRQ2_1562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRQ2_1562 PF00512 His Kinase A (phospho-acceptor) domain TRQ2_1564 PF00664 ABC transporter transmembrane region TRQ2_1564 PF00005 ABC transporter TRQ2_1565 PF00155 Aminotransferase class I and II TRQ2_1566 PF13419 Haloacid dehalogenase-like hydrolase TRQ2_1567 PF00795 Carbon-nitrogen hydrolase TRQ2_1567 PF02540 NAD synthase TRQ2_1569 PF02769 AIR synthase related protein, C-terminal domain TRQ2_1569 PF00586 AIR synthase related protein, N-terminal domain TRQ2_1570 PF02843 Phosphoribosylglycinamide synthetase, C domain TRQ2_1570 PF02844 Phosphoribosylglycinamide synthetase, N domain TRQ2_1570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TRQ2_1571 PF02142 MGS-like domain TRQ2_1571 PF01808 AICARFT/IMPCHase bienzyme TRQ2_1572 PF00551 Formyl transferase TRQ2_1573 PF00156 Phosphoribosyl transferase domain TRQ2_1574 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TRQ2_1574 PF02769 AIR synthase related protein, C-terminal domain TRQ2_1574 PF00586 AIR synthase related protein, N-terminal domain TRQ2_1574 PF16904 Phosphoribosylformylglycinamidine synthase II C-terminus TRQ2_1576 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TRQ2_1577 PF01259 SAICAR synthetase TRQ2_1579 PF06071 Protein of unknown function (DUF933) TRQ2_1579 PF01926 50S ribosome-binding GTPase TRQ2_1581 PF13361 UvrD-like helicase C-terminal domain TRQ2_1581 PF00580 UvrD/REP helicase N-terminal domain TRQ2_1584 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1585 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1586 PF00005 ABC transporter TRQ2_1586 PF08402 TOBE domain TRQ2_1587 PF07748 Glycosyl hydrolases family 38 C-terminal domain TRQ2_1587 PF01074 Glycosyl hydrolases family 38 N-terminal domain TRQ2_1587 PF09261 Alpha mannosidase middle domain TRQ2_1588 PF00534 Glycosyl transferases group 1 TRQ2_1589 PF00535 Glycosyl transferase family 2 TRQ2_1590 PF01418 Helix-turn-helix domain, rpiR family TRQ2_1590 PF01380 SIS domain TRQ2_1592 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_1593 PF04041 beta-1,4-mannooligosaccharide phosphorylase TRQ2_1594 PF00480 ROK family TRQ2_1594 PF01325 Iron dependent repressor, N-terminal DNA binding domain TRQ2_1595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_1596 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1597 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_1597 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1598 PF00005 ABC transporter TRQ2_1598 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1599 PF00005 ABC transporter TRQ2_1599 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1601 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TRQ2_1601 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRQ2_1602 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TRQ2_1603 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TRQ2_1603 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TRQ2_1604 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TRQ2_1606 PF00361 Proton-conducting membrane transporter TRQ2_1607 PF00361 Proton-conducting membrane transporter TRQ2_1608 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TRQ2_1609 PF13244 Domain of unknown function (DUF4040) TRQ2_1609 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TRQ2_1609 PF00361 Proton-conducting membrane transporter TRQ2_1609 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TRQ2_1612 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TRQ2_1613 PF01899 Na+/H+ ion antiporter subunit TRQ2_1614 PF01547 Bacterial extracellular solute-binding protein TRQ2_1615 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1615 PF14785 Maltose transport system permease protein MalF P2 domain TRQ2_1616 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1617 PF07745 Glycosyl hydrolase family 53 TRQ2_1620 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1621 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1621 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_1622 PF00005 ABC transporter TRQ2_1622 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1623 PF08533 Beta-galactosidase C-terminal domain TRQ2_1623 PF08532 Beta-galactosidase trimerisation domain TRQ2_1623 PF02449 Beta-galactosidase TRQ2_1624 PF00005 ABC transporter TRQ2_1624 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1625 PF02837 Glycosyl hydrolases family 2, sugar binding domain TRQ2_1625 PF16353 Domain of unknown function(DUF4981) TRQ2_1625 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TRQ2_1625 PF00703 Glycosyl hydrolases family 2 TRQ2_1625 PF02929 Beta galactosidase small chain TRQ2_1627 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TRQ2_1627 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TRQ2_1628 PF00288 GHMP kinases N terminal domain TRQ2_1628 PF08544 GHMP kinases C terminal TRQ2_1628 PF10509 Galactokinase galactose-binding signature TRQ2_1629 PF12323 Helix-turn-helix domain TRQ2_1629 PF01385 Probable transposase TRQ2_1629 PF07282 Putative transposase DNA-binding domain TRQ2_1632 PF01594 AI-2E family transporter TRQ2_1634 PF02142 MGS-like domain TRQ2_1635 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_1635 PF03707 Bacterial signalling protein N terminal repeat TRQ2_1635 PF00563 EAL domain TRQ2_1636 PF00248 Aldo/keto reductase family TRQ2_1637 PF02463 RecF/RecN/SMC N terminal domain TRQ2_1637 PF06470 SMC proteins Flexible Hinge Domain TRQ2_1638 PF00293 NUDIX domain TRQ2_1640 PF02561 Flagellar protein FliS TRQ2_1641 PF00583 Acetyltransferase (GNAT) family TRQ2_1642 PF13419 Haloacid dehalogenase-like hydrolase TRQ2_1643 PF03063 Prismane/CO dehydrogenase family TRQ2_1645 PF00072 Response regulator receiver domain TRQ2_1647 PF11897 Protein of unknown function (DUF3417) TRQ2_1647 PF00343 Carbohydrate phosphorylase TRQ2_1649 PF04055 Radical SAM superfamily TRQ2_1649 PF06969 HemN C-terminal domain TRQ2_1650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRQ2_1652 PF17155 Gammaproteobacterial periplasmic sensor domain TRQ2_1652 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_1653 PF12706 Beta-lactamase superfamily domain TRQ2_1654 PF01769 Divalent cation transporter TRQ2_1654 PF00571 CBS domain TRQ2_1654 PF03448 MgtE intracellular N domain TRQ2_1658 PF00117 Glutamine amidotransferase class-I TRQ2_1660 PF04024 PspC domain TRQ2_1661 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TRQ2_1661 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TRQ2_1662 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TRQ2_1663 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1663 PF12911 N-terminal TM domain of oligopeptide transport permease C TRQ2_1664 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1664 PF00005 ABC transporter TRQ2_1665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRQ2_1665 PF00005 ABC transporter TRQ2_1666 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRQ2_1668 PF00180 Isocitrate/isopropylmalate dehydrogenase TRQ2_1670 PF02683 Cytochrome C biogenesis protein transmembrane region TRQ2_1671 PF00571 CBS domain TRQ2_1671 PF00478 IMP dehydrogenase / GMP reductase domain TRQ2_1672 PF00005 ABC transporter TRQ2_1673 PF00005 ABC transporter TRQ2_1673 PF12399 Branched-chain amino acid ATP-binding cassette transporter TRQ2_1674 PF02653 Branched-chain amino acid transport system / permease component TRQ2_1674 PF11862 Domain of unknown function (DUF3382) TRQ2_1675 PF02653 Branched-chain amino acid transport system / permease component TRQ2_1679 PF07726 ATPase family associated with various cellular activities (AAA) TRQ2_1679 PF17863 AAA lid domain TRQ2_1680 PF00155 Aminotransferase class I and II TRQ2_1681 PF01515 Phosphate acetyl/butaryl transferase TRQ2_1682 PF01048 Phosphorylase superfamily TRQ2_1683 PF00210 Ferritin-like domain TRQ2_1693 PF07195 Flagellar hook-associated protein 2 C-terminus TRQ2_1693 PF07196 Flagellin hook IN motif TRQ2_1693 PF02465 Flagellar hook-associated protein 2 N-terminus TRQ2_1694 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1695 PF00528 Binding-protein-dependent transport system inner membrane component TRQ2_1696 PF13416 Bacterial extracellular solute-binding protein TRQ2_1714 PF00035 Double-stranded RNA binding motif TRQ2_1714 PF14622 Ribonuclease-III-like TRQ2_1715 PF12850 Calcineurin-like phosphoesterase superfamily domain TRQ2_1717 PF02223 Thymidylate kinase TRQ2_1719 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TRQ2_1719 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TRQ2_1720 PF00709 Adenylosuccinate synthetase TRQ2_1721 PF10397 Adenylosuccinate lyase C-terminus TRQ2_1721 PF00206 Lyase TRQ2_1722 PF05958 tRNA (Uracil-5-)-methyltransferase TRQ2_1723 PF03485 Arginyl tRNA synthetase N terminal domain TRQ2_1723 PF05746 DALR anticodon binding domain TRQ2_1723 PF00750 tRNA synthetases class I (R) TRQ2_1726 PF13393 Histidyl-tRNA synthetase TRQ2_1726 PF03129 Anticodon binding domain TRQ2_1727 PF02386 Cation transport protein TRQ2_1729 PF02254 TrkA-N domain TRQ2_1729 PF02080 TrkA-C domain TRQ2_1732 PF08264 Anticodon-binding domain of tRNA TRQ2_1732 PF01588 Putative tRNA binding domain TRQ2_1732 PF09334 tRNA synthetases class I (M) TRQ2_1733 PF03989 DNA gyrase C-terminal domain, beta-propeller TRQ2_1733 PF00521 DNA gyrase/topoisomerase IV, subunit A TRQ2_1734 PF01951 Archease protein family (MTH1598/TM1083) TRQ2_1735 PF01726 LexA DNA binding domain TRQ2_1735 PF00717 Peptidase S24-like TRQ2_1736 PF01740 STAS domain TRQ2_1737 PF02502 Ribose/Galactose Isomerase TRQ2_1740 PF02569 Pantoate-beta-alanine ligase TRQ2_1742 PF00117 Glutamine amidotransferase class-I TRQ2_1742 PF02540 NAD synthase TRQ2_1742 PF00958 GMP synthase C terminal domain TRQ2_1744 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TRQ2_1744 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TRQ2_1749 PF04232 Stage V sporulation protein S (SpoVS) TRQ2_1751 PF07885 Ion channel TRQ2_1751 PF02254 TrkA-N domain TRQ2_1752 PF03091 CutA1 divalent ion tolerance protein TRQ2_1754 PF00005 ABC transporter TRQ2_1756 PF10531 SLBB domain TRQ2_1761 PF03775 Septum formation inhibitor MinC, C-terminal domain TRQ2_1763 PF03600 Citrate transporter TRQ2_1764 PF01385 Probable transposase TRQ2_1764 PF07282 Putative transposase DNA-binding domain TRQ2_1764 PF12323 Helix-turn-helix domain TRQ2_1765 PF13393 Histidyl-tRNA synthetase TRQ2_1766 PF01634 ATP phosphoribosyltransferase TRQ2_1767 PF00815 Histidinol dehydrogenase TRQ2_1768 PF00155 Aminotransferase class I and II TRQ2_1769 PF00475 Imidazoleglycerol-phosphate dehydratase TRQ2_1770 PF00117 Glutamine amidotransferase class-I TRQ2_1771 PF00977 Histidine biosynthesis protein TRQ2_1772 PF00977 Histidine biosynthesis protein TRQ2_1773 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TRQ2_1773 PF01502 Phosphoribosyl-AMP cyclohydrolase TRQ2_1774 PF02350 UDP-N-acetylglucosamine 2-epimerase TRQ2_1775 PF01050 Mannose-6-phosphate isomerase TRQ2_1775 PF00483 Nucleotidyl transferase TRQ2_1777 PF00462 Glutaredoxin TRQ2_1780 PF00005 ABC transporter TRQ2_1780 PF13732 Domain of unknown function (DUF4162) TRQ2_1784 PF12146 Serine aminopeptidase, S33 TRQ2_1785 PF07690 Major Facilitator Superfamily TRQ2_1790 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TRQ2_1790 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TRQ2_1796 PF00248 Aldo/keto reductase family TRQ2_1798 PF00248 Aldo/keto reductase family TRQ2_1799 PF12833 Helix-turn-helix domain TRQ2_1799 PF06719 AraC-type transcriptional regulator N-terminus TRQ2_1805 PF00271 Helicase conserved C-terminal domain TRQ2_1805 PF00176 SNF2 family N-terminal domain TRQ2_1809 PF06672 Protein of unknown function (DUF1175) TRQ2_1811 PF07703 Alpha-2-macroglobulin bait region domain TRQ2_1811 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TRQ2_1811 PF07678 A-macroglobulin TED domain TRQ2_1811 PF01835 MG2 domain TRQ2_1811 PF00207 Alpha-2-macroglobulin family TRQ2_1812 PF01206 Sulfurtransferase TusA TRQ2_1817 PF01206 Sulfurtransferase TusA TRQ2_1820 PF00990 Diguanylate cyclase, GGDEF domain TRQ2_1823 PF00589 Phage integrase family TRQ2_1823 PF02899 Phage integrase, N-terminal SAM-like domain TRQ2_1824 PF02540 NAD synthase TRQ2_1825 PF00731 AIR carboxylase TRQ2_1826 PF01969 Protein of unknown function DUF111 TRQ2_1828 PF01713 Smr domain TRQ2_1828 PF00488 MutS domain V TRQ2_1829 PF01713 Smr domain TRQ2_1829 PF00488 MutS domain V TRQ2_1831 PF04011 LemA family TRQ2_1837 PF03951 Glutamine synthetase, beta-Grasp domain TRQ2_1837 PF00120 Glutamine synthetase, catalytic domain TRQ2_1840 PF01479 S4 domain TRQ2_1840 PF00849 RNA pseudouridylate synthase TRQ2_1841 PF02261 Aspartate decarboxylase TRQ2_1844 PF01979 Amidohydrolase family TRQ2_1845 PF03448 MgtE intracellular N domain TRQ2_1845 PF00571 CBS domain TRQ2_1845 PF01769 Divalent cation transporter TRQ2_1846 PF03600 Citrate transporter TRQ2_1850 PF05362 Lon protease (S16) C-terminal proteolytic domain TRQ2_1850 PF00004 ATPase family associated with various cellular activities (AAA) TRQ2_1850 PF02190 ATP-dependent protease La (LON) substrate-binding domain TRQ2_1851 PF09967 VWA-like domain (DUF2201) TRQ2_1851 PF13203 Putative metallopeptidase domain TRQ2_1852 PF16236 Domain of unknown function (DUF4895)