locus-tag	class	description
TRQ2_0002	COG0220	tRNA (guanine-N7-)-methyltransferase activity
TRQ2_0005	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
TRQ2_0005	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
TRQ2_0006	COG0741	lytic transglycosylase activity
TRQ2_0009	COG0840	transmembrane signaling receptor activity
TRQ2_0010	COG0306	phosphate transporter
TRQ2_0012	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
TRQ2_0013	COG1392	Phosphate transport regulator
TRQ2_0014	COG3956	TIGRFAM MazG family protein
TRQ2_0016	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TRQ2_0017	COG1684	flagellar biosynthetic protein fliR
TRQ2_0018	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ2_0019	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ2_0020	COG1419	protein localization to endoplasmic reticulum
TRQ2_0021	COG0455	bacterial-type flagellum organization
TRQ2_0023	COG1776	CheC inhibitor of MCP methylation
TRQ2_0024	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
TRQ2_0025	COG1191	sigma factor activity
TRQ2_0030	COG2359	stage V sporulation protein S
TRQ2_0031	COG1085	galactose-1-phosphate uridylyltransferase
TRQ2_0032	COG0297	glycogen (starch) synthase activity
TRQ2_0035	COG2239	Acts as a magnesium transporter
TRQ2_0036	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
TRQ2_0037	COG0750	zinc metalloprotease
TRQ2_0038	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
TRQ2_0040	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TRQ2_0046	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
TRQ2_0047	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
TRQ2_0049	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ2_0049	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ2_0051	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
TRQ2_0053	COG1214	PFAM Peptidase M22, glycoprotease
TRQ2_0054	COG0542	response to heat
TRQ2_0057	COG0768	penicillin binding
TRQ2_0058	COG0492	ferredoxin-NADP+ reductase activity
TRQ2_0063	COG1234	tRNA 3'-trailer cleavage
TRQ2_0066	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TRQ2_0067	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TRQ2_0068	COG1862	Preprotein translocase
TRQ2_0070	COG0196	riboflavin kinase activity
TRQ2_0071	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
TRQ2_0073	COG1639	'signal transduction protein
TRQ2_0074	COG5002	protein histidine kinase activity
TRQ2_0075	COG0009	L-threonylcarbamoyladenylate synthase
TRQ2_0079	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
TRQ2_0080	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
TRQ2_0081	COG0295	cytidine deaminase activity
TRQ2_0082	COG4535	Mg2 and Co2 transporter CorC
TRQ2_0083	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
TRQ2_0085	COG2201	protein-glutamate methylesterase activity
TRQ2_0088	COG0772	Belongs to the SEDS family
TRQ2_0091	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
TRQ2_0092	COG0849	cell division
TRQ2_0094	COG0187	DNA topoisomerase II activity
TRQ2_0096	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
TRQ2_0097	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_0100	COG3842	ATPase activity
TRQ2_0101	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
TRQ2_0103	COG1309	transcriptional regulator
TRQ2_0104	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ2_0104	COG0072	phenylalanine-tRNA ligase activity
TRQ2_0105	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
TRQ2_0106	COG1979	alcohol dehydrogenase
TRQ2_0108	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
TRQ2_0111	COG0534	Mate efflux family protein
TRQ2_0113	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
TRQ2_0114	COG0395	ABC-type sugar transport system, permease component
TRQ2_0117	COG1472	Belongs to the glycosyl hydrolase 3 family
TRQ2_0118	COG1846	Transcriptional regulator
TRQ2_0118	COG1940	carbohydrate kinase activity
TRQ2_0119	COG0450	alkyl hydroperoxide reductase
TRQ2_0121	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ2_0122	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
TRQ2_0123	COG0504	CTP synthase activity
TRQ2_0124	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
TRQ2_0125	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
TRQ2_0126	COG2070	2-Nitropropane dioxygenase
TRQ2_0127	COG1268	BioY protein
TRQ2_0128	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
TRQ2_0129	COG2045	Belongs to the ComB family
TRQ2_0134	COG1131	(ABC) transporter
TRQ2_0135	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
TRQ2_0136	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
TRQ2_0137	COG0351	phosphomethylpyrimidine kinase
TRQ2_0137	COG1992	Thiamine-phosphate synthase
TRQ2_0140	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
TRQ2_0142	COG1659	Linocin_M18 bacteriocin protein
TRQ2_0154	COG1774	PSP1 C-terminal conserved region
TRQ2_0156	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_0157	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
TRQ2_0158	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
TRQ2_0159	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
TRQ2_0161	COG1131	(ABC) transporter
TRQ2_0164	COG0052	Belongs to the universal ribosomal protein uS2 family
TRQ2_0169	COG0463	Glycosyl transferase, family 2
TRQ2_0169	COG0457	Tetratricopeptide repeat
TRQ2_0172	COG0426	domain, Protein
TRQ2_0173	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TRQ2_0174	COG2226	methyltransferase
TRQ2_0175	COG1486	melibiose metabolic process
TRQ2_0176	COG0572	uridine kinase
TRQ2_0179	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TRQ2_0180	COG0793	Belongs to the peptidase S41A family
TRQ2_0183	COG0438	transferase activity, transferring glycosyl groups
TRQ2_0186	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
TRQ2_0188	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_0188	COG2199	diguanylate cyclase activity
TRQ2_0191	COG1482	cell wall glycoprotein biosynthetic process
TRQ2_0196	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
TRQ2_0198	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
TRQ2_0200	COG0312	modulator of DNA gyrase
TRQ2_0201	COG0312	modulator of DNA gyrase
TRQ2_0205	COG0557	exoribonuclease II activity
TRQ2_0206	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
TRQ2_0208	COG0215	cysteine-tRNA ligase activity
TRQ2_0209	COG0835	chemotaxis
TRQ2_0210	COG0511	ligase activity, forming carbon-carbon bonds
TRQ2_0210	COG5016	pyruvate
TRQ2_0212	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
TRQ2_0219	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
TRQ2_0220	COG0095	Lipoate-protein ligase
TRQ2_0223	COG1136	(ABC) transporter
TRQ2_0224	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TRQ2_0226	COG2198	Histidine kinase
TRQ2_0226	COG0643	Histidine kinase
TRQ2_0227	COG0835	chemotaxis
TRQ2_0228	COG2201	protein-glutamate methylesterase activity
TRQ2_0230	COG1338	Plays a role in the flagellum-specific transport system
TRQ2_0233	COG0740	serine-type endopeptidase activity
TRQ2_0234	COG0544	peptidyl-prolyl cis-trans isomerase activity
TRQ2_0236	COG0736	holo-[acyl-carrier-protein] synthase activity
TRQ2_0239	COG0149	triose-phosphate isomerase activity
TRQ2_0239	COG0126	phosphoglycerate kinase activity
TRQ2_0241	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
TRQ2_0243	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
TRQ2_0249	COG1776	CheC inhibitor of MCP methylation
TRQ2_0249	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ2_0250	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ2_0252	COG1360	Flagellar Motor Protein
TRQ2_0254	COG1582	Flagellar protein (FlbD)
TRQ2_0262	COG0084	hydrolase, TatD family'
TRQ2_0263	COG1045	serine acetyltransferase
TRQ2_0264	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
TRQ2_0267	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TRQ2_0269	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
TRQ2_0270	COG1773	rubredoxin
TRQ2_0271	COG2033	superoxide reductase activity
TRQ2_0272	COG1592	Rubrerythrin
TRQ2_0273	COG1476	TRANSCRIPTIONal
TRQ2_0274	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
TRQ2_0275	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
TRQ2_0276	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_0278	COG0561	phosphatase activity
TRQ2_0281	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
TRQ2_0283	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ2_0289	COG1596	polysaccharide export
TRQ2_0295	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
TRQ2_0300	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
TRQ2_0301	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
TRQ2_0306	COG1091	dTDP-4-dehydrorhamnose reductase activity
TRQ2_0309	COG0438	transferase activity, transferring glycosyl groups
TRQ2_0309	COG0297	glycogen (starch) synthase activity
TRQ2_0316	COG1337	RAMP superfamily
TRQ2_0329	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TRQ2_0332	COG0629	single-stranded DNA binding
TRQ2_0338	COG0395	ABC-type sugar transport system, permease component
TRQ2_0339	COG1175	transmembrane transport
TRQ2_0341	COG2252	PERMEase
TRQ2_0345	COG0768	penicillin binding
TRQ2_0348	COG1077	Cell shape determining protein MreB Mrl
TRQ2_0349	COG1227	inorganic diphosphatase activity
TRQ2_0349	COG0517	IMP dehydrogenase activity
TRQ2_0350	COG0697	spore germination
TRQ2_0351	COG0673	inositol 2-dehydrogenase activity
TRQ2_0356	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
TRQ2_0358	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
TRQ2_0359	COG0456	acetyltransferase
TRQ2_0360	COG2176	DNA-directed DNA polymerase activity
TRQ2_0361	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
TRQ2_0362	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
TRQ2_0363	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TRQ2_0364	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
TRQ2_0365	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
TRQ2_0366	COG0552	protein localization to endoplasmic reticulum
TRQ2_0369	COG1959	2 iron, 2 sulfur cluster binding
TRQ2_0376	COG0598	Magnesium transport protein CorA
TRQ2_0379	COG0505	Belongs to the CarA family
TRQ2_0381	COG0473	3-isopropylmalate dehydrogenase activity
TRQ2_0382	COG0066	3-isopropylmalate dehydratase activity
TRQ2_0383	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TRQ2_0384	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TRQ2_0385	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TRQ2_0387	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
TRQ2_0388	COG0440	acetolactate synthase activity
TRQ2_0389	COG0028	Belongs to the TPP enzyme family
TRQ2_0390	COG0527	aspartate kinase activity
TRQ2_0391	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
TRQ2_0392	COG0083	homoserine kinase activity
TRQ2_0393	COG1131	(ABC) transporter
TRQ2_0396	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
TRQ2_0396	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
TRQ2_0398	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
TRQ2_0400	COG4717	serine-type aminopeptidase activity
TRQ2_0403	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TRQ2_0404	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_0405	COG0601	transmembrane transport
TRQ2_0406	COG0747	negative chemotaxis
TRQ2_0407	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0410	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
TRQ2_0413	COG2521	methyltransferase
TRQ2_0413	COG2136	Putative SAM-dependent methyltransferase
TRQ2_0416	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
TRQ2_0422	COG1242	4 iron, 4 sulfur cluster binding
TRQ2_0424	COG0606	chelatase, subunit chli
TRQ2_0426	COG1573	uracil-dna glycosylase
TRQ2_0429	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
TRQ2_0429	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
TRQ2_0430	COG0459	protein refolding
TRQ2_0431	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
TRQ2_0432	COG0601	transmembrane transport
TRQ2_0433	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_0434	COG0444	Belongs to the ABC transporter superfamily
TRQ2_0435	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0437	COG0444	Belongs to the ABC transporter superfamily
TRQ2_0440	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
TRQ2_0441	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
TRQ2_0442	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
TRQ2_0443	COG0180	Tryptophanyl-tRNA synthetase
TRQ2_0445	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
TRQ2_0446	COG1595	DNA-templated transcription, initiation
TRQ2_0447	COG2890	protein-(glutamine-N5) methyltransferase activity
TRQ2_0448	COG2151	metal-sulfur cluster biosynthetic enzyme
TRQ2_0450	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TRQ2_0451	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TRQ2_0452	COG1116	anion transmembrane transporter activity
TRQ2_0455	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
TRQ2_0456	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TRQ2_0457	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
TRQ2_0458	COG1196	nuclear chromosome segregation
TRQ2_0460	COG1335	isochorismatase
TRQ2_0462	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
TRQ2_0467	COG0745	RESPONSE REGULATOR receiver
TRQ2_0471	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
TRQ2_0472	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
TRQ2_0473	COG0564	pseudouridine synthase activity
TRQ2_0474	COG0587	DNA-directed DNA polymerase activity
TRQ2_0478	COG0222	ribosome binding
TRQ2_0479	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
TRQ2_0481	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
TRQ2_0482	COG0250	Participates in transcription elongation, termination and antitermination
TRQ2_0483	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TRQ2_0484	COG0267	Belongs to the bacterial ribosomal protein bL33 family
TRQ2_0487	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TRQ2_0488	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
TRQ2_0489	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
TRQ2_0491	COG1027	Aspartate ammonia-lyase
TRQ2_0492	COG1070	Carbohydrate kinase
TRQ2_0494	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_0496	COG1802	Transcriptional regulator
TRQ2_0497	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
TRQ2_0500	COG0747	negative chemotaxis
TRQ2_0503	COG1073	alpha beta
TRQ2_0504	COG3458	cephalosporin-C deacetylase activity
TRQ2_0505	COG1486	melibiose metabolic process
TRQ2_0506	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0507	COG0444	Belongs to the ABC transporter superfamily
TRQ2_0508	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_0509	COG0601	transmembrane transport
TRQ2_0510	COG0747	negative chemotaxis
TRQ2_0514	COG0395	ABC-type sugar transport system, permease component
TRQ2_0515	COG0840	transmembrane signaling receptor activity
TRQ2_0516	COG1902	pentaerythritol trinitrate reductase activity
TRQ2_0522	COG0371	Dehydrogenase
TRQ2_0525	COG0739	heme binding
TRQ2_0526	COG2201	protein-glutamate methylesterase activity
TRQ2_0529	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ2_0531	COG0347	Belongs to the P(II) protein family
TRQ2_0532	COG0004	ammonium transporteR
TRQ2_0534	COG5002	protein histidine kinase activity
TRQ2_0534	COG3850	Histidine kinase
TRQ2_0536	COG0067	glutamate synthase
TRQ2_0537	COG0069	glutamate synthase activity
TRQ2_0537	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
TRQ2_0538	COG0493	'glutamate synthase
TRQ2_0538	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ2_0542	COG0438	transferase activity, transferring glycosyl groups
TRQ2_0543	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
TRQ2_0544	COG0446	pyridine nucleotide-disulphide oxidoreductase
TRQ2_0547	COG1194	a g-specific adenine glycosylase
TRQ2_0551	COG0778	Nitroreductase
TRQ2_0554	COG1131	(ABC) transporter
TRQ2_0555	COG0730	response to heat
TRQ2_0556	COG4869	propanediol catabolic process
TRQ2_0557	COG0071	Belongs to the small heat shock protein (HSP20) family
TRQ2_0558	COG0443	Heat shock 70 kDa protein
TRQ2_0560	COG1438	arginine binding
TRQ2_0561	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
TRQ2_0564	COG0840	transmembrane signaling receptor activity
TRQ2_0566	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
TRQ2_0567	COG1362	aminopeptidase activity
TRQ2_0568	COG0366	Alpha amylase catalytic
TRQ2_0572	COG3956	TIGRFAM MazG family protein
TRQ2_0576	COG1597	lipid kinase activity
TRQ2_0579	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
TRQ2_0582	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
TRQ2_0583	COG1136	(ABC) transporter
TRQ2_0584	COG1136	(ABC) transporter
TRQ2_0584	COG0577	efflux transmembrane transporter activity
TRQ2_0586	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
TRQ2_0587	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
TRQ2_0587	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
TRQ2_0589	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
TRQ2_0590	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
TRQ2_0592	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
TRQ2_0596	COG1032	radical SAM domain protein
TRQ2_0597	COG1073	alpha beta
TRQ2_0598	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
TRQ2_0599	COG0543	2 iron, 2 sulfur cluster binding
TRQ2_0600	COG0167	dihydroorotate dehydrogenase activity
TRQ2_0601	COG0284	orotidine-5'-phosphate decarboxylase activity
TRQ2_0602	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
TRQ2_0603	COG1574	metal-dependent hydrolase with the TIM-barrel fold
TRQ2_0606	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TRQ2_0607	COG1737	Transcriptional regulator
TRQ2_0608	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_0609	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TRQ2_0611	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TRQ2_0614	COG2217	Heavy metal translocating P-type atpase
TRQ2_0618	COG0667	Aldo Keto reductase
TRQ2_0622	COG0747	negative chemotaxis
TRQ2_0623	COG1501	Belongs to the glycosyl hydrolase 31 family
TRQ2_0628	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0629	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_0630	COG0601	transmembrane transport
TRQ2_0633	COG1063	alcohol dehydrogenase
TRQ2_0634	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_0635	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
TRQ2_0637	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TRQ2_0638	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
TRQ2_0640	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
TRQ2_0640	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
TRQ2_0640	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
TRQ2_0642	COG1349	DNA-binding transcription factor activity
TRQ2_0643	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
TRQ2_0645	COG0066	3-isopropylmalate dehydratase activity
TRQ2_0646	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TRQ2_0647	COG0372	Belongs to the citrate synthase family
TRQ2_0648	COG0205	6-phosphofructokinase activity
TRQ2_0649	COG1132	(ABC) transporter
TRQ2_0650	COG1132	(ABC) transporter
TRQ2_0652	COG0371	Dehydrogenase
TRQ2_0654	COG0235	Class ii aldolase
TRQ2_0656	COG3534	alpha-L-arabinofuranosidase
TRQ2_0659	COG0395	ABC-type sugar transport system, permease component
TRQ2_0660	COG1175	transmembrane transport
TRQ2_0662	COG3507	Belongs to the glycosyl hydrolase 43 family
TRQ2_0664	COG3507	Belongs to the glycosyl hydrolase 43 family
TRQ2_0669	COG0395	ABC-type sugar transport system, permease component
TRQ2_0670	COG1175	transmembrane transport
TRQ2_0675	COG0191	fructose-bisphosphate aldolase activity
TRQ2_0676	COG0574	Belongs to the PEP-utilizing enzyme family
TRQ2_0676	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TRQ2_0678	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
TRQ2_0678	COG0646	methionine synthase
TRQ2_0680	COG1410	methionine synthase
TRQ2_0680	COG0646	methionine synthase
TRQ2_0682	COG0776	regulation of translation
TRQ2_0684	COG1187	pseudouridine synthase activity
TRQ2_0686	COG0592	DNA-directed DNA polymerase activity
TRQ2_0687	COG0306	phosphate transporter
TRQ2_0689	COG1181	Belongs to the D-alanine--D-alanine ligase family
TRQ2_0690	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
TRQ2_0693	COG0227	Belongs to the bacterial ribosomal protein bL28 family
TRQ2_0694	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
TRQ2_0695	COG0792	nuclease activity
TRQ2_0696	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TRQ2_0697	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
TRQ2_0698	COG0758	DNA mediated transformation
TRQ2_0699	COG2878	Part of a membrane complex involved in electron transport
TRQ2_0699	COG1148	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ2_0701	COG4660	Part of a membrane complex involved in electron transport
TRQ2_0703	COG4658	electron transport chain
TRQ2_0704	COG4656	Part of a membrane complex involved in electron transport
TRQ2_0705	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ2_0709	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
TRQ2_0711	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
TRQ2_0712	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
TRQ2_0715	COG0772	Belongs to the SEDS family
TRQ2_0723	COG2515	1-aminocyclopropane-1-carboxylate deaminase
TRQ2_0724	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
TRQ2_0724	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
TRQ2_0726	COG1122	ATPase activity
TRQ2_0727	COG1766	The M ring may be actively involved in energy transduction
TRQ2_0728	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ2_0730	COG1157	protein secretion by the type III secretion system
TRQ2_0736	COG0509	glycine decarboxylation via glycine cleavage system
TRQ2_0740	COG0469	pyruvate kinase activity
TRQ2_0741	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TRQ2_0743	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
TRQ2_0748	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
TRQ2_0749	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
TRQ2_0750	COG0542	response to heat
TRQ2_0751	COG0037	tRNA processing
TRQ2_0753	COG0248	Ppx GppA phosphatase
TRQ2_0754	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TRQ2_0755	COG0390	transport system, permease component
TRQ2_0756	COG2359	stage V sporulation protein S
TRQ2_0757	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
TRQ2_0758	COG4139	cobalamin transport
TRQ2_0765	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ2_0765	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TRQ2_0766	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_0770	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
TRQ2_0771	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
TRQ2_0773	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TRQ2_0774	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
TRQ2_0775	COG1110	DNA topoisomerase II activity
TRQ2_0776	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
TRQ2_0777	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
TRQ2_0779	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
TRQ2_0780	COG0495	leucyl-tRNA aminoacylation
TRQ2_0781	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
TRQ2_0782	COG0285	dihydrofolate synthase activity
TRQ2_0783	COG0632	four-way junction helicase activity
TRQ2_0789	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
TRQ2_0790	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
TRQ2_0793	COG1785	Belongs to the alkaline phosphatase family
TRQ2_0798	COG0333	Belongs to the bacterial ribosomal protein bL32 family
TRQ2_0799	COG0416	fatty acid biosynthetic process
TRQ2_0800	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
TRQ2_0801	COG0799	negative regulation of ribosome biogenesis
TRQ2_0802	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
TRQ2_0803	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
TRQ2_0805	COG0745	RESPONSE REGULATOR receiver
TRQ2_0805	COG3706	GGDEF domain
TRQ2_0806	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
TRQ2_0807	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TRQ2_0807	COG0512	Glutamine amidotransferase of anthranilate synthase
TRQ2_0808	COG0134	indole-3-glycerol-phosphate synthase activity
TRQ2_0809	COG0135	phosphoribosylanthranilate isomerase activity
TRQ2_0810	COG0133	tryptophan synthase activity
TRQ2_0811	COG0159	tryptophan synthase activity
TRQ2_0812	COG0820	rRNA (adenine-C2-)-methyltransferase activity
TRQ2_0814	COG0492	ferredoxin-NADP+ reductase activity
TRQ2_0815	COG1335	isochorismatase
TRQ2_0816	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
TRQ2_0821	COG0745	RESPONSE REGULATOR receiver
TRQ2_0822	COG1108	ABC-type Mn2 Zn2 transport systems permease components
TRQ2_0823	COG1121	(ABC) transporter
TRQ2_0824	COG0803	Belongs to the bacterial solute-binding protein 9 family
TRQ2_0826	COG1509	lysine 2,3-aminomutase activity
TRQ2_0827	COG0778	Nitroreductase
TRQ2_0831	COG1070	Carbohydrate kinase
TRQ2_0832	COG1129	ABC transporter
TRQ2_0835	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ2_0837	COG1940	carbohydrate kinase activity
TRQ2_0839	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
TRQ2_0847	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TRQ2_0851	COG3116	cell division
TRQ2_0851	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
TRQ2_0852	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
TRQ2_0861	COG0728	peptidoglycan biosynthetic process
TRQ2_0865	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
TRQ2_0867	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
TRQ2_0868	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
TRQ2_0869	COG1120	ATPase activity
TRQ2_0870	COG3458	cephalosporin-C deacetylase activity
TRQ2_0872	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0873	COG0444	Belongs to the ABC transporter superfamily
TRQ2_0874	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_0875	COG0601	transmembrane transport
TRQ2_0878	COG1312	Catalyzes the dehydration of D-mannonate
TRQ2_0879	COG0246	Mannitol dehydrogenase
TRQ2_0881	COG0800	Aldolase
TRQ2_0882	COG1414	Transcriptional regulator
TRQ2_0885	COG3693	PFAM glycoside hydrolase, family 10
TRQ2_0886	COG0601	transmembrane transport
TRQ2_0887	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_0888	COG0444	Belongs to the ABC transporter superfamily
TRQ2_0889	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0890	COG0747	negative chemotaxis
TRQ2_0891	COG3661	Belongs to the glycosyl hydrolase 67 family
TRQ2_0895	COG1918	ferrous iron import across plasma membrane
TRQ2_0895	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
TRQ2_0897	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ2_0899	COG0675	Transposase, IS605 OrfB family
TRQ2_0902	COG1132	(ABC) transporter
TRQ2_0903	COG0006	proline dipeptidase activity
TRQ2_0904	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
TRQ2_0904	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
TRQ2_0905	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
TRQ2_0906	COG1469	GTP cyclohydrolase I activity
TRQ2_0907	COG0720	synthase
TRQ2_0908	COG2199	diguanylate cyclase activity
TRQ2_0908	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_0915	COG0601	transmembrane transport
TRQ2_0917	COG0444	Belongs to the ABC transporter superfamily
TRQ2_0918	COG4608	Belongs to the ABC transporter superfamily
TRQ2_0922	COG0840	transmembrane signaling receptor activity
TRQ2_0923	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
TRQ2_0924	COG1993	acr, cog1993
TRQ2_0925	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
TRQ2_0926	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_0927	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ2_0928	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ2_0929	COG1144	Oxidoreductase
TRQ2_0930	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ2_0931	COG0840	transmembrane signaling receptor activity
TRQ2_0937	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
TRQ2_0939	COG4948	Mandelate Racemase Muconate Lactonizing
TRQ2_0941	COG0737	Belongs to the 5'-nucleotidase family
TRQ2_0943	COG0622	Phosphoesterase
TRQ2_0945	COG1278	Cold shock
TRQ2_0947	COG0432	Pfam Uncharacterised protein family UPF0047
TRQ2_0949	COG2894	cell division
TRQ2_0950	COG1067	ATP-dependent peptidase activity
TRQ2_0951	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
TRQ2_0958	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TRQ2_0959	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
TRQ2_0961	COG2137	regulation of response to DNA damage stimulus
TRQ2_0962	COG1418	mRNA catabolic process
TRQ2_0968	COG3459	Glycosyltransferase 36 associated
TRQ2_0969	COG2723	6-phospho-beta-galactosidase activity
TRQ2_0970	COG1653	transport
TRQ2_0974	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ2_0975	COG1129	ABC transporter
TRQ2_0976	COG1940	carbohydrate kinase activity
TRQ2_0978	COG1523	belongs to the glycosyl hydrolase 13 family
TRQ2_0979	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
TRQ2_0983	COG0366	Alpha amylase catalytic
TRQ2_0984	COG2182	Extracellular solute-binding protein
TRQ2_0985	COG1175	transmembrane transport
TRQ2_0987	COG0366	Alpha amylase catalytic
TRQ2_0988	COG1486	melibiose metabolic process
TRQ2_0989	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
TRQ2_0992	COG3706	GGDEF domain
TRQ2_0992	COG0745	RESPONSE REGULATOR receiver
TRQ2_0993	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TRQ2_0993	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TRQ2_0994	COG0307	riboflavin synthase, alpha
TRQ2_0995	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TRQ2_0995	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TRQ2_0996	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
TRQ2_0998	COG0330	HflC and HflK could
TRQ2_0999	COG0330	HflC and HflK could
TRQ2_1001	COG0519	Catalyzes the synthesis of GMP from XMP
TRQ2_1001	COG0518	GMP synthase (glutamine-hydrolyzing) activity
TRQ2_1003	COG2059	Chromate
TRQ2_1004	COG0525	valine-tRNA ligase activity
TRQ2_1009	COG1353	crispr-associated protein
TRQ2_1011	COG1337	RAMP superfamily
TRQ2_1017	COG0484	heat shock protein binding
TRQ2_1023	COG1518	maintenance of DNA repeat elements
TRQ2_1024	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
TRQ2_1026	COG0438	transferase activity, transferring glycosyl groups
TRQ2_1029	COG3337	CRISPR-associated protein (Cas_Cmr5)
TRQ2_1040	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
TRQ2_1042	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
TRQ2_1044	COG0165	Argininosuccinate lyase
TRQ2_1047	COG0195	Participates in both transcription termination and antitermination
TRQ2_1048	COG0735	belongs to the Fur family
TRQ2_1052	COG1461	Dihydroxyacetone kinase
TRQ2_1055	COG1722	exodeoxyribonuclease VII activity
TRQ2_1061	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
TRQ2_1062	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
TRQ2_1063	COG0556	nucleotide-excision repair
TRQ2_1069	COG3426	butyrate kinase activity
TRQ2_1070	COG0280	phosphate acetyltransferase
TRQ2_1071	COG3426	butyrate kinase activity
TRQ2_1075	COG4608	Belongs to the ABC transporter superfamily
TRQ2_1077	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_1078	COG0601	transmembrane transport
TRQ2_1081	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
TRQ2_1082	COG0667	Aldo Keto reductase
TRQ2_1083	COG0647	UMP catabolic process
TRQ2_1084	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TRQ2_1085	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
TRQ2_1088	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TRQ2_1089	COG0305	Participates in initiation and elongation during chromosome replication
TRQ2_1091	COG0704	Plays a role in the regulation of phosphate uptake
TRQ2_1094	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
TRQ2_1095	COG2255	four-way junction helicase activity
TRQ2_1100	COG1394	ATPase activity, coupled to movement of substances
TRQ2_1101	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
TRQ2_1102	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
TRQ2_1106	COG1269	ATP hydrolysis coupled proton transport
TRQ2_1110	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_1111	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
TRQ2_1114	COG2153	protein acetylation
TRQ2_1116	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
TRQ2_1117	COG1162	GTPase activity
TRQ2_1121	COG1739	Uncharacterized protein family UPF0029
TRQ2_1125	COG0391	Required for morphogenesis under gluconeogenic growth conditions
TRQ2_1131	COG1368	sulfuric ester hydrolase activity
TRQ2_1135	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_1140	COG0301	tRNA thio-modification
TRQ2_1145	COG0194	GDP metabolic process
TRQ2_1146	COG1758	RNA polymerase activity
TRQ2_1147	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
TRQ2_1148	COG1376	ErfK ybiS ycfS ynhG family protein
TRQ2_1149	COG1185	polyribonucleotide nucleotidyltransferase activity
TRQ2_1151	COG1278	Cold shock
TRQ2_1152	COG3437	response regulator, receiver
TRQ2_1160	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ2_1163	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TRQ2_1165	COG2813	Specifically methylates the guanine in position
TRQ2_1166	COG1122	ATPase activity
TRQ2_1171	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
TRQ2_1172	COG0268	Binds directly to 16S ribosomal RNA
TRQ2_1174	COG0745	RESPONSE REGULATOR receiver
TRQ2_1175	COG5002	protein histidine kinase activity
TRQ2_1178	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TRQ2_1181	COG1713	HD superfamily hydrolase involved in NAD metabolism
TRQ2_1183	COG1728	Protein conserved in bacteria
TRQ2_1184	COG0157	Belongs to the NadC ModD family
TRQ2_1190	COG1959	2 iron, 2 sulfur cluster binding
TRQ2_1191	COG1575	Belongs to the MenA family. Type 1 subfamily
TRQ2_1193	COG2086	electron transfer activity
TRQ2_1194	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
TRQ2_1195	COG0644	oxidoreductase
TRQ2_1200	COG1032	radical SAM domain protein
TRQ2_1202	COG1706	bacterial-type flagellum-dependent cell motility
TRQ2_1203	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
TRQ2_1206	COG4786	Flagellar basal body rod
TRQ2_1208	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
TRQ2_1209	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
TRQ2_1209	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
TRQ2_1210	COG1078	dGTPase activity
TRQ2_1211	COG1086	Polysaccharide biosynthesis protein
TRQ2_1212	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ2_1213	COG3872	metal-dependent enzyme
TRQ2_1214	COG2078	PFAM AMMECR1 domain protein
TRQ2_1216	COG1477	protein flavinylation
TRQ2_1219	COG0424	maF-like protein
TRQ2_1220	COG2003	Belongs to the UPF0758 family
TRQ2_1227	COG1254	Belongs to the acylphosphatase family
TRQ2_1228	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
TRQ2_1229	COG0228	four-way junction DNA binding
TRQ2_1230	COG1837	Belongs to the UPF0109 family
TRQ2_1231	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
TRQ2_1232	COG0336	Belongs to the RNA methyltransferase TrmD family
TRQ2_1233	COG4752	Belongs to the RNA methyltransferase TrmD family
TRQ2_1234	COG0335	large ribosomal subunit rRNA binding
TRQ2_1235	COG0681	Belongs to the peptidase S26 family
TRQ2_1239	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
TRQ2_1242	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
TRQ2_1247	COG1040	competence protein
TRQ2_1248	COG2379	hydroxypyruvate reductase
TRQ2_1251	COG2199	diguanylate cyclase activity
TRQ2_1251	COG2203	Gaf domain
TRQ2_1253	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
TRQ2_1254	COG0291	Belongs to the bacterial ribosomal protein bL35 family
TRQ2_1255	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
TRQ2_1256	COG0489	protein tyrosine kinase activity
TRQ2_1257	COG3706	GGDEF domain
TRQ2_1258	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
TRQ2_1259	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TRQ2_1260	COG3457	Alanine racemase
TRQ2_1261	COG1595	DNA-templated transcription, initiation
TRQ2_1264	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_1265	COG1827	regulation of RNA biosynthetic process
TRQ2_1266	COG0477	Major facilitator Superfamily
TRQ2_1267	COG0528	UMP kinase activity
TRQ2_1268	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
TRQ2_1269	COG1530	ribonuclease E activity
TRQ2_1270	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
TRQ2_1271	COG1307	EDD domain protein, DegV family
TRQ2_1272	COG0355	proton-transporting ATP synthase activity, rotational mechanism
TRQ2_1273	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
TRQ2_1274	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
TRQ2_1275	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
TRQ2_1276	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TRQ2_1277	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TRQ2_1278	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TRQ2_1279	COG0356	it plays a direct role in the translocation of protons across the membrane
TRQ2_1282	COG1406	Chemotaxis phosphatase CheX
TRQ2_1283	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TRQ2_1283	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TRQ2_1285	COG0584	glycerophosphoryl diester phosphodiesterase
TRQ2_1287	COG0481	GTPase activity
TRQ2_1288	COG3250	beta-galactosidase activity
TRQ2_1292	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
TRQ2_1296	COG0802	atpase or kinase
TRQ2_1297	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TRQ2_1299	COG0420	3'-5' exonuclease activity
TRQ2_1300	COG0419	ATPase involved in DNA repair
TRQ2_1302	COG1131	(ABC) transporter
TRQ2_1303	COG0543	2 iron, 2 sulfur cluster binding
TRQ2_1304	COG0493	'glutamate synthase
TRQ2_1305	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
TRQ2_1306	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
TRQ2_1306	COG0540	Belongs to the ATCase OTCase family
TRQ2_1307	COG1621	beta-fructofuranosidase activity
TRQ2_1308	COG0483	inositol monophosphate 1-phosphatase activity
TRQ2_1309	COG0719	Fe-S assembly protein
TRQ2_1311	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TRQ2_1311	COG1213	nucleotidyl transferase
TRQ2_1312	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
TRQ2_1314	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TRQ2_1317	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TRQ2_1320	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
TRQ2_1321	COG0840	transmembrane signaling receptor activity
TRQ2_1323	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
TRQ2_1325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
TRQ2_1330	COG1543	Belongs to the glycosyl hydrolase 57 family
TRQ2_1332	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TRQ2_1332	COG2050	protein possibly involved in aromatic compounds catabolism
TRQ2_1334	COG1366	Belongs to the anti-sigma-factor antagonist family
TRQ2_1337	COG0539	negative regulation of cytoplasmic translation
TRQ2_1339	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TRQ2_1342	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
TRQ2_1343	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TRQ2_1344	COG0358	DNA primase activity
TRQ2_1346	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
TRQ2_1347	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
TRQ2_1348	COG0211	Belongs to the bacterial ribosomal protein bL27 family
TRQ2_1353	COG0706	membrane insertase activity
TRQ2_1354	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
TRQ2_1356	COG0230	Belongs to the bacterial ribosomal protein bL34 family
TRQ2_1358	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
TRQ2_1360	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_1362	COG1307	EDD domain protein, DegV family
TRQ2_1363	COG1940	carbohydrate kinase activity
TRQ2_1364	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
TRQ2_1365	COG0203	ribosomal protein L17
TRQ2_1366	COG0202	RNA polymerase activity
TRQ2_1367	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
TRQ2_1368	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
TRQ2_1369	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
TRQ2_1370	COG0257	Belongs to the bacterial ribosomal protein bL36 family
TRQ2_1371	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
TRQ2_1373	COG0563	adenylate kinase activity
TRQ2_1374	COG0201	protein transport
TRQ2_1375	COG0200	Binds to the 23S rRNA
TRQ2_1376	COG1841	ribosomal large subunit assembly
TRQ2_1377	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
TRQ2_1378	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
TRQ2_1379	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
TRQ2_1380	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
TRQ2_1381	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
TRQ2_1383	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
TRQ2_1384	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
TRQ2_1386	COG0255	Belongs to the universal ribosomal protein uL29 family
TRQ2_1387	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
TRQ2_1390	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
TRQ2_1391	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
TRQ2_1392	COG0089	rRNA binding
TRQ2_1393	COG0088	Forms part of the polypeptide exit tunnel
TRQ2_1394	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
TRQ2_1395	COG0051	transcription antitermination factor activity, RNA binding
TRQ2_1396	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TRQ2_1398	COG0049	tRNA binding
TRQ2_1399	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
TRQ2_1401	COG1702	phosphate starvation-inducible protein PhoH
TRQ2_1402	COG1480	7TM receptor with intracellular HD hydrolase
TRQ2_1405	COG2738	Putative neutral zinc metallopeptidase
TRQ2_1406	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
TRQ2_1406	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TRQ2_1407	COG1323	Belongs to the UPF0348 family
TRQ2_1410	COG1473	amidohydrolase
TRQ2_1411	COG0019	diaminopimelate decarboxylase activity
TRQ2_1413	COG2171	N-acyltransferase activity
TRQ2_1416	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
TRQ2_1417	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
TRQ2_1419	COG0438	transferase activity, transferring glycosyl groups
TRQ2_1420	COG2342	PFAM TM1410 hypothetical-related protein
TRQ2_1425	COG0438	transferase activity, transferring glycosyl groups
TRQ2_1428	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TRQ2_1429	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
TRQ2_1430	COG0233	cytoplasmic translational termination
TRQ2_1431	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
TRQ2_1432	COG0575	Belongs to the CDS family
TRQ2_1438	COG0542	response to heat
TRQ2_1441	COG0742	ribosomal rna small subunit methyltransferase
TRQ2_1442	COG0237	dephospho-CoA kinase activity
TRQ2_1444	COG0166	Belongs to the GPI family
TRQ2_1451	COG1177	transmembrane transport
TRQ2_1452	COG1176	ABC-type spermidine putrescine transport system, permease component I
TRQ2_1453	COG3842	ATPase activity
TRQ2_1454	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
TRQ2_1455	COG0406	alpha-ribazole phosphatase activity
TRQ2_1457	COG0822	iron-sulfur transferase activity
TRQ2_1458	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
TRQ2_1460	COG0719	Fe-S assembly protein
TRQ2_1461	COG0396	ATPase activity
TRQ2_1463	COG1677	Flagellar hook-basal body complex protein FliE
TRQ2_1465	COG1815	bacterial-type flagellum-dependent cell motility
TRQ2_1466	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
TRQ2_1468	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
TRQ2_1469	COG0745	RESPONSE REGULATOR receiver
TRQ2_1470	COG3852	Histidine kinase
TRQ2_1475	COG0517	IMP dehydrogenase activity
TRQ2_1475	COG0516	GMP reductase activity
TRQ2_1479	COG2267	carboxylic ester hydrolase activity
TRQ2_1480	COG0628	permease
TRQ2_1482	COG0516	GMP reductase activity
TRQ2_1482	COG0517	IMP dehydrogenase activity
TRQ2_1483	COG0612	Peptidase, M16
TRQ2_1484	COG1185	polyribonucleotide nucleotidyltransferase activity
TRQ2_1485	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
TRQ2_1498	COG1132	(ABC) transporter
TRQ2_1499	COG4555	ABC transporter
TRQ2_1502	COG0641	radical SAM
TRQ2_1504	COG1598	PFAM Uncharacterised protein family UPF0150
TRQ2_1506	COG1132	(ABC) transporter
TRQ2_1507	COG1132	(ABC) transporter
TRQ2_1510	COG0457	Tetratricopeptide repeat
TRQ2_1511	COG1598	PFAM Uncharacterised protein family UPF0150
TRQ2_1519	COG4555	ABC transporter
TRQ2_1522	COG0667	Aldo Keto reductase
TRQ2_1524	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TRQ2_1526	COG2226	methyltransferase
TRQ2_1527	COG0489	protein tyrosine kinase activity
TRQ2_1528	COG2894	cell division
TRQ2_1531	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
TRQ2_1531	COG0731	radical SAM domain protein
TRQ2_1532	COG0662	Cupin 2, conserved barrel domain protein
TRQ2_1533	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
TRQ2_1536	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TRQ2_1538	COG1486	melibiose metabolic process
TRQ2_1543	COG3842	ATPase activity
TRQ2_1547	COG0154	amidase activity
TRQ2_1550	COG0626	cystathionine gamma-synthase activity
TRQ2_1551	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ2_1556	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
TRQ2_1558	COG0573	inorganic phosphate transmembrane transporter activity
TRQ2_1559	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TRQ2_1560	COG0704	Plays a role in the regulation of phosphate uptake
TRQ2_1561	COG0745	RESPONSE REGULATOR receiver
TRQ2_1564	COG1132	(ABC) transporter
TRQ2_1565	COG0436	Aminotransferase
TRQ2_1566	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TRQ2_1567	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TRQ2_1567	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ2_1570	COG0151	Belongs to the GarS family
TRQ2_1571	COG0138	bifunctional purine biosynthesis protein purh
TRQ2_1572	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
TRQ2_1573	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
TRQ2_1574	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TRQ2_1575	COG0047	phosphoribosylformylglycinamidine synthase activity
TRQ2_1576	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TRQ2_1579	COG0012	GTP binding
TRQ2_1581	COG0210	DNA helicase
TRQ2_1586	COG3842	ATPase activity
TRQ2_1587	COG0383	alpha-mannosidase activity
TRQ2_1588	COG0438	transferase activity, transferring glycosyl groups
TRQ2_1589	COG0463	Glycosyl transferase, family 2
TRQ2_1592	COG0747	negative chemotaxis
TRQ2_1593	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
TRQ2_1594	COG1940	carbohydrate kinase activity
TRQ2_1595	COG4166	transmembrane transport
TRQ2_1596	COG0601	transmembrane transport
TRQ2_1597	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_1598	COG0444	Belongs to the ABC transporter superfamily
TRQ2_1599	COG4608	Belongs to the ABC transporter superfamily
TRQ2_1602	COG0649	NAD binding
TRQ2_1603	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ2_1603	COG0649	NAD binding
TRQ2_1604	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ2_1606	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ2_1607	COG0651	ATP synthesis coupled electron transport
TRQ2_1609	COG2111	Na H antiporter
TRQ2_1609	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
TRQ2_1612	COG2212	antiporter activity
TRQ2_1613	COG1863	multisubunit Na H antiporter MnhE subunit
TRQ2_1614	COG2182	Extracellular solute-binding protein
TRQ2_1615	COG1175	transmembrane transport
TRQ2_1616	COG3833	ABC-type maltose transport systems, permease component
TRQ2_1621	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_1622	COG4608	Belongs to the ABC transporter superfamily
TRQ2_1624	COG0444	Belongs to the ABC transporter superfamily
TRQ2_1625	COG3250	beta-galactosidase activity
TRQ2_1626	COG3345	alpha-galactosidase
TRQ2_1627	COG1085	galactose-1-phosphate uridylyltransferase
TRQ2_1628	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
TRQ2_1632	COG0628	permease
TRQ2_1634	COG1803	Methylglyoxal synthase
TRQ2_1636	COG0667	Aldo Keto reductase
TRQ2_1637	COG1196	nuclear chromosome segregation
TRQ2_1638	COG0494	nUDIX hydrolase
TRQ2_1640	COG1516	flagellar protein fliS
TRQ2_1641	COG0456	acetyltransferase
TRQ2_1642	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TRQ2_1643	COG1151	hydroxylamine reductase activity
TRQ2_1646	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_1647	COG0058	SHG alpha-glucan phosphorylase activity
TRQ2_1649	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TRQ2_1650	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ2_1652	COG2199	diguanylate cyclase activity
TRQ2_1654	COG2239	Acts as a magnesium transporter
TRQ2_1657	COG0010	Belongs to the arginase family
TRQ2_1660	COG1983	PspC domain protein
TRQ2_1661	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
TRQ2_1662	COG0363	glucosamine-6-phosphate deaminase activity
TRQ2_1663	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_1664	COG0444	Belongs to the ABC transporter superfamily
TRQ2_1665	COG4608	Belongs to the ABC transporter superfamily
TRQ2_1666	COG0747	negative chemotaxis
TRQ2_1670	COG0785	Cytochrome C biogenesis protein
TRQ2_1672	COG0410	ABC transporter
TRQ2_1673	COG0411	ABC transporter
TRQ2_1675	COG0559	Belongs to the binding-protein-dependent transport system permease family
TRQ2_1679	COG0714	Associated with various cellular activities
TRQ2_1680	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
TRQ2_1681	COG0280	phosphate acetyltransferase
TRQ2_1682	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
TRQ2_1693	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
TRQ2_1695	COG1175	transmembrane transport
TRQ2_1696	COG1653	transport
TRQ2_1715	COG0622	Phosphoesterase
TRQ2_1719	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
TRQ2_1720	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
TRQ2_1721	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
TRQ2_1722	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
TRQ2_1727	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
TRQ2_1729	COG0569	domain protein
TRQ2_1732	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ2_1732	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ2_1733	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
TRQ2_1734	COG1371	PFAM Archease protein family (DUF101 UPF0211)
TRQ2_1736	COG1366	Belongs to the anti-sigma-factor antagonist family
TRQ2_1737	COG0698	ribose 5-phosphate isomerase
TRQ2_1744	COG1070	Carbohydrate kinase
TRQ2_1749	COG2359	stage V sporulation protein S
TRQ2_1751	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
TRQ2_1752	COG1324	tolerance protein
TRQ2_1754	COG1137	ATPase activity
TRQ2_1756	COG1596	polysaccharide export
TRQ2_1756	COG1555	photosystem II stabilization
TRQ2_1763	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
TRQ2_1765	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
TRQ2_1766	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
TRQ2_1767	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
TRQ2_1769	COG0131	Imidazoleglycerol-phosphate dehydratase
TRQ2_1770	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
TRQ2_1771	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
TRQ2_1773	COG0140	phosphoribosyl-ATP diphosphatase activity
TRQ2_1773	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
TRQ2_1774	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
TRQ2_1775	COG0662	Cupin 2, conserved barrel domain protein
TRQ2_1775	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
TRQ2_1780	COG1131	(ABC) transporter
TRQ2_1785	COG2814	Major facilitator Superfamily
TRQ2_1790	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
TRQ2_1796	COG0656	L-ascorbic acid biosynthetic process
TRQ2_1798	COG0667	Aldo Keto reductase
TRQ2_1799	COG2207	Transcriptional regulator
TRQ2_1801	COG0640	Transcriptional regulator
TRQ2_1805	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
TRQ2_1809	COG3234	Protein of unknown function (DUF1175)
TRQ2_1811	COG2373	Large extracellular alpha-helical protein
TRQ2_1812	COG0425	Belongs to the sulfur carrier protein TusA family
TRQ2_1817	COG0425	Belongs to the sulfur carrier protein TusA family
TRQ2_1820	COG3706	GGDEF domain
TRQ2_1823	COG4974	Belongs to the 'phage' integrase family
TRQ2_1824	COG1606	tRNA processing
TRQ2_1825	COG1691	(AIR) carboxylase
TRQ2_1828	COG1193	negative regulation of DNA recombination
TRQ2_1829	COG1193	negative regulation of DNA recombination
TRQ2_1831	COG1704	LemA family
TRQ2_1837	COG0174	glutamine synthetase
TRQ2_1844	COG0402	S-adenosylhomocysteine deaminase activity
TRQ2_1845	COG2239	Acts as a magnesium transporter
TRQ2_1846	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
TRQ2_1850	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TRQ2_1851	COG3864	Putative metallopeptidase domain
TRQ2_1853	COG1141	Ferredoxin