TRQ2_0001 SM00382 ATPases associated with a variety of cellular activities TRQ2_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain TRQ2_0004 SM00028 Tetratricopeptide repeats TRQ2_0009 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TRQ2_0009 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TRQ2_0020 SM00382 ATPases associated with a variety of cellular activities TRQ2_0020 SM00962 SRP54-type protein, GTPase domain TRQ2_0033 SM00849 Metallo-beta-lactamase superfamily TRQ2_0035 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_0037 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TRQ2_0039 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain TRQ2_0043 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0050 SM01192 TRQ2_0050 TRQ2_0050 SM01193 TRQ2_0050 TRQ2_0054 SM00382 ATPases associated with a variety of cellular activities TRQ2_0054 SM01086 C-terminal, D2-small domain, of ClpB protein TRQ2_0057 SM00740 TRQ2_0057 TRQ2_0061 SM00244 prohibitin homologues TRQ2_0068 SM01323 TRQ2_0068 TRQ2_0070 SM00904 Riboflavin kinase TRQ2_0073 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0074 SM00387 Histidine kinase-like ATPases TRQ2_0074 SM00388 His Kinase A (phosphoacceptor) domain TRQ2_0078 SM00271 DnaJ molecular chaperone homology domain TRQ2_0082 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_0082 SM01091 Transporter associated domain TRQ2_0084 SM01221 TRQ2_0084 TRQ2_0084 SM01222 TRQ2_0084 TRQ2_0085 SM00448 cheY-homologous receiver domain TRQ2_0090 SM00382 ATPases associated with a variety of cellular activities TRQ2_0091 SM00864 Tubulin/FtsZ family, GTPase domain TRQ2_0091 SM00865 Tubulin/FtsZ family, C-terminal domain TRQ2_0092 SM00842 Cell division protein FtsA TRQ2_0094 SM00387 Histidine kinase-like ATPases TRQ2_0094 SM00433 TopoisomeraseII TRQ2_0097 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0098 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_0101 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0102 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0104 SM00873 B3/4 domain TRQ2_0104 SM00874 tRNA synthetase B5 domain TRQ2_0104 SM00896 Ferredoxin-fold anticodon binding domain TRQ2_0110 SM00347 helix_turn_helix multiple antibiotic resistance protein TRQ2_0122 SM00481 DNA polymerase alpha chain like domain TRQ2_0124 SM00825 Beta-ketoacyl synthase TRQ2_0128 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. TRQ2_0134 SM00382 ATPases associated with a variety of cellular activities TRQ2_0149 SM01321 TRQ2_0149 TRQ2_0156 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0159 SM00642 Alpha-amylase domain TRQ2_0160 SM00345 helix_turn_helix gluconate operon transcriptional repressor TRQ2_0161 SM00382 ATPases associated with a variety of cellular activities TRQ2_0169 SM00028 Tetratricopeptide repeats TRQ2_0170 SM00028 Tetratricopeptide repeats TRQ2_0172 SM00849 Metallo-beta-lactamase superfamily TRQ2_0176 SM00382 ATPases associated with a variety of cellular activities TRQ2_0178 SM00909 Sporulation and spore germination TRQ2_0180 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TRQ2_0180 SM00245 tail specific protease TRQ2_0187 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TRQ2_0188 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0198 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0198 SM00954 Region found in RelA / SpoT proteins TRQ2_0205 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_0205 SM00357 Cold shock protein domain TRQ2_0205 SM00955 TRQ2_0205 TRQ2_0208 SM00840 TRQ2_0208 TRQ2_0209 SM00260 Two component signalling adaptor domain TRQ2_0213 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_0218 SM00347 helix_turn_helix multiple antibiotic resistance protein TRQ2_0223 SM00382 ATPases associated with a variety of cellular activities TRQ2_0225 SM00852 Probable molybdopterin binding domain TRQ2_0226 SM00073 Histidine Phosphotransfer domain TRQ2_0226 SM00260 Two component signalling adaptor domain TRQ2_0226 SM00387 Histidine kinase-like ATPases TRQ2_0226 SM01231 TRQ2_0226 TRQ2_0227 SM00260 Two component signalling adaptor domain TRQ2_0228 SM00448 cheY-homologous receiver domain TRQ2_0241 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TRQ2_0243 SM00382 ATPases associated with a variety of cellular activities TRQ2_0248 SM00849 Metallo-beta-lactamase superfamily TRQ2_0265 SM00465 GIY-YIG type nucleases (URI domain) TRQ2_0273 SM00530 Helix-turn-helix XRE-family like proteins TRQ2_0276 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0277 SM00155 Phospholipase D. Active site motifs. TRQ2_0294 SM00047 Lysozyme subfamily 2 TRQ2_0319 SM00670 Large family of predicted nucleotide-binding domains TRQ2_0321 SM00382 ATPases associated with a variety of cellular activities TRQ2_0324 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain TRQ2_0329 SM00849 Metallo-beta-lactamase superfamily TRQ2_0334 SM00529 Helix-turn-helix diphteria tox regulatory element TRQ2_0337 SM00481 DNA polymerase alpha chain like domain TRQ2_0342 SM00062 Bacterial periplasmic substrate-binding proteins TRQ2_0342 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. TRQ2_0344 SM00382 ATPases associated with a variety of cellular activities TRQ2_0349 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_0349 SM01131 TRQ2_0349 TRQ2_0353 SM00984 UDP binding domain TRQ2_0354 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0356 SM00382 ATPases associated with a variety of cellular activities TRQ2_0357 SM00977 TilS substrate C-terminal domain TRQ2_0360 SM00479 TRQ2_0360 TRQ2_0360 SM00481 DNA polymerase alpha chain like domain TRQ2_0365 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TRQ2_0366 SM00382 ATPases associated with a variety of cellular activities TRQ2_0366 SM00962 SRP54-type protein, GTPase domain TRQ2_0366 SM00963 SRP54-type protein, helical bundle domain TRQ2_0368 SM00257 Lysin motif TRQ2_0378 SM00481 DNA polymerase alpha chain like domain TRQ2_0379 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain TRQ2_0380 SM00851 MGS-like domain TRQ2_0380 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TRQ2_0381 SM01329 TRQ2_0381 TRQ2_0384 SM00917 LeuA allosteric (dimerisation) domain TRQ2_0385 SM00917 LeuA allosteric (dimerisation) domain TRQ2_0393 SM00382 ATPases associated with a variety of cellular activities TRQ2_0395 SM00919 Malic enzyme, NAD binding domain TRQ2_0395 SM01274 TRQ2_0395 TRQ2_0407 SM00382 ATPases associated with a variety of cellular activities TRQ2_0415 SM00382 ATPases associated with a variety of cellular activities TRQ2_0415 SM01086 C-terminal, D2-small domain, of ClpB protein TRQ2_0418 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TRQ2_0422 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0424 SM00382 ATPases associated with a variety of cellular activities TRQ2_0426 SM00986 Uracil DNA glycosylase superfamily TRQ2_0426 SM00987 UreE urease accessory protein, C-terminal domain TRQ2_0427 SM00529 Helix-turn-helix diphteria tox regulatory element TRQ2_0429 SM00382 ATPases associated with a variety of cellular activities TRQ2_0429 SM00506 Appr-1"-p processing enzyme TRQ2_0431 SM00883 Chaperonin 10 Kd subunit TRQ2_0434 SM00382 ATPases associated with a variety of cellular activities TRQ2_0435 SM00382 ATPases associated with a variety of cellular activities TRQ2_0437 SM00382 ATPases associated with a variety of cellular activities TRQ2_0439 SM00479 TRQ2_0439 TRQ2_0440 SM00670 Large family of predicted nucleotide-binding domains TRQ2_0452 SM00382 ATPases associated with a variety of cellular activities TRQ2_0455 SM00382 ATPases associated with a variety of cellular activities TRQ2_0457 SM00363 S4 RNA-binding domain TRQ2_0467 SM00448 cheY-homologous receiver domain TRQ2_0468 SM00331 Sigma factor PP2C-like phosphatases TRQ2_0471 SM00138 Methyltransferase, chemotaxis proteins TRQ2_0473 SM00363 S4 RNA-binding domain TRQ2_0474 SM00481 DNA polymerase alpha chain like domain TRQ2_0476 SM00663 RNA polymerase I subunit A N-terminus TRQ2_0481 SM00649 Ribosomal protein L11/L12 TRQ2_0482 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. TRQ2_0482 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TRQ2_0489 SM01001 AIR carboxylase TRQ2_0494 SM00822 TRQ2_0494 TRQ2_0496 SM00345 helix_turn_helix gluconate operon transcriptional repressor TRQ2_0496 SM00895 TRQ2_0496 TRQ2_0497 SM01350 TRQ2_0497 TRQ2_0499 SM00829 Enoylreductase TRQ2_0502 SM01217 TRQ2_0502 TRQ2_0506 SM00382 ATPases associated with a variety of cellular activities TRQ2_0507 SM00382 ATPases associated with a variety of cellular activities TRQ2_0511 SM00656 TRQ2_0511 TRQ2_0515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TRQ2_0515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TRQ2_0525 SM00257 Lysin motif TRQ2_0526 SM00448 cheY-homologous receiver domain TRQ2_0531 SM00938 Nitrogen regulatory protein P-II TRQ2_0534 SM00387 Histidine kinase-like ATPases TRQ2_0534 SM00388 His Kinase A (phosphoacceptor) domain TRQ2_0535 SM00448 cheY-homologous receiver domain TRQ2_0535 SM00862 Transcriptional regulatory protein, C terminal TRQ2_0547 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TRQ2_0547 SM00478 endonuclease III TRQ2_0554 SM00382 ATPases associated with a variety of cellular activities TRQ2_0564 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TRQ2_0564 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TRQ2_0566 SM00478 endonuclease III TRQ2_0566 SM00525 TRQ2_0566 TRQ2_0568 SM00642 Alpha-amylase domain TRQ2_0570 SM00518 AP endonuclease family 2 TRQ2_0574 SM01321 TRQ2_0574 TRQ2_0576 SM00046 Diacylglycerol kinase catalytic domain (presumed) TRQ2_0583 SM00382 ATPases associated with a variety of cellular activities TRQ2_0596 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0601 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family TRQ2_0617 SM00746 metallochaperone-like domain TRQ2_0625 SM00812 Alpha-L-fucosidase TRQ2_0627 SM00382 ATPases associated with a variety of cellular activities TRQ2_0628 SM00382 ATPases associated with a variety of cellular activities TRQ2_0632 SM00354 helix_turn _helix lactose operon repressor TRQ2_0642 SM00420 helix_turn_helix, Deoxyribose operon repressor TRQ2_0642 SM01134 TRQ2_0642 TRQ2_0643 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase TRQ2_0649 SM00382 ATPases associated with a variety of cellular activities TRQ2_0650 SM00382 ATPases associated with a variety of cellular activities TRQ2_0654 SM01007 Class II Aldolase and Adducin N-terminal domain TRQ2_0656 SM00813 Alpha-L-arabinofuranosidase C-terminus TRQ2_0658 SM00813 Alpha-L-arabinofuranosidase C-terminus TRQ2_0667 SM00560 LamG-like jellyroll fold domain TRQ2_0673 SM00345 helix_turn_helix gluconate operon transcriptional repressor TRQ2_0680 SM01018 B12 binding domain TRQ2_0682 SM00411 bacterial (prokaryotic) histone like domain TRQ2_0683 SM00465 GIY-YIG type nucleases (URI domain) TRQ2_0684 SM00363 S4 RNA-binding domain TRQ2_0685 SM01228 TRQ2_0685 TRQ2_0686 SM00480 DNA polymerase III beta subunit TRQ2_0690 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain TRQ2_0690 SM00437 Bacterial DNA topoisomerase I DNA-binding domain TRQ2_0690 SM00493 TRQ2_0690 TRQ2_0691 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0702 SM00900 TRQ2_0702 TRQ2_0705 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0720 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRQ2_0725 SM00363 S4 RNA-binding domain TRQ2_0726 SM00382 ATPases associated with a variety of cellular activities TRQ2_0730 SM00382 ATPases associated with a variety of cellular activities TRQ2_0743 SM00487 DEAD-like helicases superfamily TRQ2_0743 SM00490 helicase superfamily c-terminal domain TRQ2_0744 SM00382 ATPases associated with a variety of cellular activities TRQ2_0747 SM00902 Iron hydrogenase small subunit TRQ2_0747 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TRQ2_0749 SM00382 ATPases associated with a variety of cellular activities TRQ2_0750 SM00382 ATPases associated with a variety of cellular activities TRQ2_0750 SM01086 C-terminal, D2-small domain, of ClpB protein TRQ2_0754 SM00382 ATPases associated with a variety of cellular activities TRQ2_0757 SM00382 ATPases associated with a variety of cellular activities TRQ2_0761 SM00387 Histidine kinase-like ATPases TRQ2_0762 SM00448 cheY-homologous receiver domain TRQ2_0762 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0766 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0770 SM00487 DEAD-like helicases superfamily TRQ2_0770 SM00490 helicase superfamily c-terminal domain TRQ2_0775 SM00382 ATPases associated with a variety of cellular activities TRQ2_0775 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain TRQ2_0775 SM00437 Bacterial DNA topoisomerase I DNA-binding domain TRQ2_0775 SM00487 DEAD-like helicases superfamily TRQ2_0775 SM00493 TRQ2_0775 TRQ2_0776 SM00996 S-adenosyl-L-homocysteine hydrolase TRQ2_0776 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TRQ2_0779 SM00881 CoA binding domain TRQ2_0783 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TRQ2_0792 SM00903 Flavin reductase like domain TRQ2_0793 SM00098 Alkaline phosphatase homologues TRQ2_0794 SM00830 Chorismate mutase type II TRQ2_0802 SM00382 ATPases associated with a variety of cellular activities TRQ2_0802 SM00994 ClpX C4-type zinc finger TRQ2_0802 SM01086 C-terminal, D2-small domain, of ClpB protein TRQ2_0804 SM00834 Putative regulatory protein TRQ2_0805 SM00267 diguanylate cyclase TRQ2_0805 SM00448 cheY-homologous receiver domain TRQ2_0813 SM00849 Metallo-beta-lactamase superfamily TRQ2_0820 SM00387 Histidine kinase-like ATPases TRQ2_0821 SM00448 cheY-homologous receiver domain TRQ2_0821 SM00862 Transcriptional regulatory protein, C terminal TRQ2_0823 SM00382 ATPases associated with a variety of cellular activities TRQ2_0832 SM00382 ATPases associated with a variety of cellular activities TRQ2_0837 SM00419 helix_turn_helix, cAMP Regulatory protein TRQ2_0840 SM00267 diguanylate cyclase TRQ2_0844 SM00382 ATPases associated with a variety of cellular activities TRQ2_0847 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TRQ2_0847 SM00292 breast cancer carboxy-terminal domain TRQ2_0847 SM00532 Ligase N family TRQ2_0869 SM00382 ATPases associated with a variety of cellular activities TRQ2_0871 SM01217 TRQ2_0871 TRQ2_0872 SM00382 ATPases associated with a variety of cellular activities TRQ2_0873 SM00382 ATPases associated with a variety of cellular activities TRQ2_0877 SM00633 Glycosyl hydrolase family 10 TRQ2_0882 SM00346 helix_turn_helix isocitrate lyase regulation TRQ2_0885 SM00633 Glycosyl hydrolase family 10 TRQ2_0888 SM00382 ATPases associated with a variety of cellular activities TRQ2_0889 SM00382 ATPases associated with a variety of cellular activities TRQ2_0896 SM00899 TRQ2_0896 TRQ2_0902 SM00382 ATPases associated with a variety of cellular activities TRQ2_0908 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0909 SM00382 ATPases associated with a variety of cellular activities TRQ2_0917 SM00382 ATPases associated with a variety of cellular activities TRQ2_0918 SM00382 ATPases associated with a variety of cellular activities TRQ2_0920 SM01217 TRQ2_0920 TRQ2_0922 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TRQ2_0922 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TRQ2_0923 SM00853 MutL C terminal dimerisation domain TRQ2_0923 SM01340 TRQ2_0923 TRQ2_0931 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TRQ2_0932 SM00849 Metallo-beta-lactamase superfamily TRQ2_0935 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRQ2_0938 SM00460 Transglutaminase/protease-like homologues TRQ2_0939 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain TRQ2_0945 SM00357 Cold shock protein domain TRQ2_0957 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_0960 SM00382 ATPases associated with a variety of cellular activities TRQ2_0962 SM00322 K homology RNA-binding domain TRQ2_0962 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_0965 SM00872 Alpha mannosidase, middle domain TRQ2_0968 SM01068 Putative carbohydrate binding domain TRQ2_0975 SM00382 ATPases associated with a variety of cellular activities TRQ2_0977 SM00320 WD40 repeats TRQ2_0978 SM00642 Alpha-amylase domain TRQ2_0979 SM01065 Starch binding domain TRQ2_0983 SM00642 Alpha-amylase domain TRQ2_0984 SM00948 Proteasome subunit A N-terminal signature Add an annotation TRQ2_0987 SM00642 Alpha-amylase domain TRQ2_0990 SM01321 TRQ2_0990 TRQ2_0992 SM00267 diguanylate cyclase TRQ2_0998 SM00244 prohibitin homologues TRQ2_0999 SM00244 prohibitin homologues TRQ2_1000 SM00478 endonuclease III TRQ2_1017 SM00271 DnaJ molecular chaperone homology domain TRQ2_1021 SM00487 DEAD-like helicases superfamily TRQ2_1034 SM00267 diguanylate cyclase TRQ2_1043 SM00859 Semialdehyde dehydrogenase, NAD binding domain TRQ2_1047 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_1051 SM00028 Tetratricopeptide repeats TRQ2_1052 SM01120 TRQ2_1052 TRQ2_1052 SM01121 TRQ2_1052 TRQ2_1054 SM00861 Transketolase, pyrimidine binding domain TRQ2_1061 SM00841 Elongation factor P, C-terminal TRQ2_1061 SM01185 TRQ2_1061 TRQ2_1062 SM00861 Transketolase, pyrimidine binding domain TRQ2_1063 SM00487 DEAD-like helicases superfamily TRQ2_1063 SM00490 helicase superfamily c-terminal domain TRQ2_1075 SM00382 ATPases associated with a variety of cellular activities TRQ2_1076 SM00382 ATPases associated with a variety of cellular activities TRQ2_1084 SM00967 RNA 2'-O ribose methyltransferase substrate binding TRQ2_1085 SM00535 Ribonuclease III family TRQ2_1086 SM00933 TRQ2_1086 TRQ2_1089 SM00382 ATPases associated with a variety of cellular activities TRQ2_1095 SM00382 ATPases associated with a variety of cellular activities TRQ2_1099 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TRQ2_1110 SM00822 TRQ2_1110 TRQ2_1115 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TRQ2_1115 SM00534 ATPase domain of DNA mismatch repair MUTS family TRQ2_1118 SM00740 TRQ2_1118 TRQ2_1119 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1139 SM00028 Tetratricopeptide repeats TRQ2_1140 SM00981 TRQ2_1140 TRQ2_1141 SM00563 Phosphate acyltransferases TRQ2_1145 SM00072 Guanylate kinase homologues. TRQ2_1145 SM00382 ATPases associated with a variety of cellular activities TRQ2_1146 SM01409 TRQ2_1146 TRQ2_1148 SM00257 Lysin motif TRQ2_1149 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_1151 SM00357 Cold shock protein domain TRQ2_1152 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1154 SM00849 Metallo-beta-lactamase superfamily TRQ2_1164 SM00387 Histidine kinase-like ATPases TRQ2_1166 SM00382 ATPases associated with a variety of cellular activities TRQ2_1174 SM00448 cheY-homologous receiver domain TRQ2_1174 SM00862 Transcriptional regulatory protein, C terminal TRQ2_1175 SM00091 PAS domain TRQ2_1175 SM00387 Histidine kinase-like ATPases TRQ2_1175 SM00388 His Kinase A (phosphoacceptor) domain TRQ2_1176 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain TRQ2_1178 SM00838 Elongation factor G C-terminus TRQ2_1178 SM00889 Elongation factor G, domain IV TRQ2_1179 SM00642 Alpha-amylase domain TRQ2_1193 SM00893 Electron transfer flavoprotein domain TRQ2_1194 SM00893 Electron transfer flavoprotein domain TRQ2_1200 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1204 SM00858 TRQ2_1204 TRQ2_1208 SM00732 Likely ribonuclease with RNase H fold. TRQ2_1210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1215 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1221 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1222 SM01133 TRQ2_1222 TRQ2_1228 SM00382 ATPases associated with a variety of cellular activities TRQ2_1228 SM00962 SRP54-type protein, GTPase domain TRQ2_1228 SM00963 SRP54-type protein, helical bundle domain TRQ2_1236 SM00564 beta-propeller repeat TRQ2_1239 SM00363 S4 RNA-binding domain TRQ2_1241 SM00957 SecA DEAD-like domain TRQ2_1241 SM00958 SecA preprotein cross-linking domain TRQ2_1242 SM00937 TRQ2_1242 TRQ2_1251 SM00267 diguanylate cyclase TRQ2_1257 SM00267 diguanylate cyclase TRQ2_1264 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1269 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_1273 SM00382 ATPases associated with a variety of cellular activities TRQ2_1283 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs TRQ2_1283 SM00474 3'-5' exonuclease TRQ2_1283 SM00475 5'-3' exonuclease TRQ2_1283 SM00482 DNA polymerase A domain TRQ2_1292 SM01400 TRQ2_1292 TRQ2_1297 SM00382 ATPases associated with a variety of cellular activities TRQ2_1297 SM00464 Found in ATP-dependent protease La (LON) TRQ2_1302 SM00382 ATPases associated with a variety of cellular activities TRQ2_1307 SM00640 Glycosyl hydrolases family 32 TRQ2_1310 SM00382 ATPases associated with a variety of cellular activities TRQ2_1318 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRQ2_1319 SM00902 Iron hydrogenase small subunit TRQ2_1319 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TRQ2_1320 SM00881 CoA binding domain TRQ2_1321 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TRQ2_1321 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TRQ2_1321 SM01049 TRQ2_1321 TRQ2_1327 SM00881 CoA binding domain TRQ2_1329 SM00650 Ribosomal RNA adenine dimethylases TRQ2_1337 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_1339 SM01207 TRQ2_1339 TRQ2_1341 SM00028 Tetratricopeptide repeats TRQ2_1342 SM00487 DEAD-like helicases superfamily TRQ2_1342 SM00490 helicase superfamily c-terminal domain TRQ2_1342 SM00982 TRQ2_1342 TRQ2_1342 SM01058 CarD-like/TRCF domain TRQ2_1344 SM00400 zinc finger TRQ2_1344 SM00493 TRQ2_1344 TRQ2_1352 SM00393 Putative single-stranded nucleic acids-binding domain TRQ2_1352 SM01245 TRQ2_1352 TRQ2_1354 SM01234 TRQ2_1354 TRQ2_1360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1364 SM00357 Cold shock protein domain TRQ2_1364 SM00382 ATPases associated with a variety of cellular activities TRQ2_1364 SM00959 Rho termination factor, N-terminal domain TRQ2_1366 SM00662 RNA polymerases D TRQ2_1367 SM00363 S4 RNA-binding domain TRQ2_1367 SM01390 TRQ2_1367 TRQ2_1371 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_1383 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TRQ2_1384 SM01374 TRQ2_1384 TRQ2_1388 SM00322 K homology RNA-binding domain TRQ2_1391 SM01382 TRQ2_1391 TRQ2_1391 SM01383 TRQ2_1391 TRQ2_1395 SM01403 TRQ2_1395 TRQ2_1397 SM00838 Elongation factor G C-terminus TRQ2_1397 SM00889 Elongation factor G, domain IV TRQ2_1402 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1415 SM01130 TRQ2_1415 TRQ2_1417 SM00859 Semialdehyde dehydrogenase, NAD binding domain TRQ2_1427 SM00382 ATPases associated with a variety of cellular activities TRQ2_1433 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TRQ2_1438 SM00382 ATPases associated with a variety of cellular activities TRQ2_1438 SM01086 C-terminal, D2-small domain, of ClpB protein TRQ2_1453 SM00382 ATPases associated with a variety of cellular activities TRQ2_1455 SM00855 Phosphoglycerate mutase family TRQ2_1461 SM00382 ATPases associated with a variety of cellular activities TRQ2_1466 SM00937 TRQ2_1466 TRQ2_1467 SM00382 ATPases associated with a variety of cellular activities TRQ2_1469 SM00448 cheY-homologous receiver domain TRQ2_1470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TRQ2_1470 SM00091 PAS domain TRQ2_1470 SM00387 Histidine kinase-like ATPases TRQ2_1470 SM00388 His Kinase A (phosphoacceptor) domain TRQ2_1475 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_1477 SM00481 DNA polymerase alpha chain like domain TRQ2_1482 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_1482 SM01240 TRQ2_1482 TRQ2_1484 SM00316 Ribosomal protein S1-like RNA-binding domain TRQ2_1484 SM00322 K homology RNA-binding domain TRQ2_1485 SM01387 TRQ2_1485 TRQ2_1493 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1496 SM00530 Helix-turn-helix XRE-family like proteins TRQ2_1498 SM00382 ATPases associated with a variety of cellular activities TRQ2_1499 SM00382 ATPases associated with a variety of cellular activities TRQ2_1501 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1502 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1506 SM00382 ATPases associated with a variety of cellular activities TRQ2_1507 SM00382 ATPases associated with a variety of cellular activities TRQ2_1510 SM00530 Helix-turn-helix XRE-family like proteins TRQ2_1519 SM00382 ATPases associated with a variety of cellular activities TRQ2_1524 SM00849 Metallo-beta-lactamase superfamily TRQ2_1536 SM01207 TRQ2_1536 TRQ2_1541 SM00463 Small MutS-related domain TRQ2_1541 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TRQ2_1541 SM00534 ATPase domain of DNA mismatch repair MUTS family TRQ2_1542 SM00842 Cell division protein FtsA TRQ2_1543 SM00382 ATPases associated with a variety of cellular activities TRQ2_1546 SM00845 GatB domain TRQ2_1549 SM00633 Glycosyl hydrolase family 10 TRQ2_1551 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1551 SM00876 Biotin and Thiamin Synthesis associated domain TRQ2_1553 SM00876 Biotin and Thiamin Synthesis associated domain TRQ2_1555 SM00382 ATPases associated with a variety of cellular activities TRQ2_1559 SM00382 ATPases associated with a variety of cellular activities TRQ2_1561 SM00448 cheY-homologous receiver domain TRQ2_1561 SM00862 Transcriptional regulatory protein, C terminal TRQ2_1562 SM00387 Histidine kinase-like ATPases TRQ2_1562 SM00388 His Kinase A (phosphoacceptor) domain TRQ2_1564 SM00382 ATPases associated with a variety of cellular activities TRQ2_1570 SM01209 TRQ2_1570 TRQ2_1570 SM01210 TRQ2_1570 TRQ2_1571 SM00798 AICARFT/IMPCHase bienzyme TRQ2_1571 SM00851 MGS-like domain TRQ2_1575 SM01211 TRQ2_1575 TRQ2_1586 SM00382 ATPases associated with a variety of cellular activities TRQ2_1598 SM00382 ATPases associated with a variety of cellular activities TRQ2_1599 SM00382 ATPases associated with a variety of cellular activities TRQ2_1600 SM00354 helix_turn _helix lactose operon repressor TRQ2_1614 SM00948 Proteasome subunit A N-terminal signature Add an annotation TRQ2_1618 SM00354 helix_turn _helix lactose operon repressor TRQ2_1622 SM00382 ATPases associated with a variety of cellular activities TRQ2_1624 SM00382 ATPases associated with a variety of cellular activities TRQ2_1625 SM01038 Beta galactosidase small chain TRQ2_1633 SM00834 Putative regulatory protein TRQ2_1634 SM00851 MGS-like domain TRQ2_1635 SM00091 PAS domain TRQ2_1635 SM00267 diguanylate cyclase TRQ2_1637 SM00968 SMC proteins Flexible Hinge Domain TRQ2_1644 SM00100 Cyclic nucleotide-monophosphate binding domain TRQ2_1644 SM00419 helix_turn_helix, cAMP Regulatory protein TRQ2_1645 SM00062 Bacterial periplasmic substrate-binding proteins TRQ2_1645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TRQ2_1649 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1652 SM00267 diguanylate cyclase TRQ2_1653 SM00849 Metallo-beta-lactamase superfamily TRQ2_1654 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_1654 SM00924 MgtE intracellular N domain TRQ2_1664 SM00382 ATPases associated with a variety of cellular activities TRQ2_1665 SM00382 ATPases associated with a variety of cellular activities TRQ2_1668 SM01329 TRQ2_1668 TRQ2_1671 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_1672 SM00382 ATPases associated with a variety of cellular activities TRQ2_1673 SM00382 ATPases associated with a variety of cellular activities TRQ2_1697 SM01043 Bacterial transcriptional activator domain TRQ2_1713 SM00729 Elongator protein 3, MiaB family, Radical SAM TRQ2_1714 SM00358 Double-stranded RNA binding motif TRQ2_1714 SM00535 Ribonuclease III family TRQ2_1720 SM00788 Adenylosuccinate synthetase TRQ2_1721 SM00998 Adenylosuccinate lyase C-terminus TRQ2_1723 SM00836 DALR anticodon binding domain TRQ2_1723 SM01016 Arginyl tRNA synthetase N terminal dom TRQ2_1733 SM00434 DNA Topoisomerase IV TRQ2_1745 SM01007 Class II Aldolase and Adducin N-terminal domain TRQ2_1754 SM00382 ATPases associated with a variety of cellular activities TRQ2_1755 SM00935 Outer membrane protein (OmpH-like) TRQ2_1756 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TRQ2_1780 SM00382 ATPases associated with a variety of cellular activities TRQ2_1790 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TRQ2_1799 SM00342 helix_turn_helix, arabinose operon control protein TRQ2_1801 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TRQ2_1805 SM00487 DEAD-like helicases superfamily TRQ2_1805 SM00490 helicase superfamily c-terminal domain TRQ2_1811 SM01359 TRQ2_1811 TRQ2_1811 SM01360 TRQ2_1811 TRQ2_1817 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TRQ2_1820 SM00267 diguanylate cyclase TRQ2_1825 SM01001 AIR carboxylase TRQ2_1828 SM00534 ATPase domain of DNA mismatch repair MUTS family TRQ2_1829 SM00534 ATPase domain of DNA mismatch repair MUTS family TRQ2_1837 SM01230 TRQ2_1837 TRQ2_1840 SM00363 S4 RNA-binding domain TRQ2_1845 SM00116 Domain in cystathionine beta-synthase and other proteins. TRQ2_1850 SM00382 ATPases associated with a variety of cellular activities