locus-tag	class	description
TRQ7_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
TRQ7_00010	COG0220	tRNA (guanine-N7-)-methyltransferase activity
TRQ7_00025	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
TRQ7_00025	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
TRQ7_00045	COG0840	transmembrane signaling receptor activity
TRQ7_00050	COG0306	phosphate transporter
TRQ7_00060	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
TRQ7_00065	COG1392	Phosphate transport regulator
TRQ7_00070	COG3956	TIGRFAM MazG family protein
TRQ7_00080	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TRQ7_00085	COG1684	flagellar biosynthetic protein fliR
TRQ7_00090	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ7_00095	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ7_00100	COG1419	protein localization to endoplasmic reticulum
TRQ7_00105	COG0455	bacterial-type flagellum organization
TRQ7_00115	COG1776	CheC inhibitor of MCP methylation
TRQ7_00120	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
TRQ7_00125	COG1191	sigma factor activity
TRQ7_00150	COG2359	stage V sporulation protein S
TRQ7_00160	COG0297	glycogen (starch) synthase activity
TRQ7_00170	COG1968	undecaprenyl-diphosphatase activity
TRQ7_00175	COG2239	Acts as a magnesium transporter
TRQ7_00180	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
TRQ7_00185	COG0750	zinc metalloprotease
TRQ7_00190	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
TRQ7_00200	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TRQ7_00205	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
TRQ7_00220	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
TRQ7_00230	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
TRQ7_00235	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
TRQ7_00245	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ7_00245	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ7_00250	COG0148	phosphopyruvate hydratase activity
TRQ7_00255	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
TRQ7_00265	COG1214	PFAM Peptidase M22, glycoprotease
TRQ7_00270	COG0542	response to heat
TRQ7_00275	COG0275	rRNA processing
TRQ7_00285	COG0768	penicillin binding
TRQ7_00290	COG0492	ferredoxin-NADP+ reductase activity
TRQ7_00315	COG1234	tRNA 3'-trailer cleavage
TRQ7_00320	COG0359	binds to the 23S rRNA
TRQ7_00330	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TRQ7_00335	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TRQ7_00340	COG1862	Preprotein translocase
TRQ7_00350	COG0196	riboflavin kinase activity
TRQ7_00355	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
TRQ7_00360	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
TRQ7_00365	COG1639	'signal transduction protein
TRQ7_00370	COG5002	protein histidine kinase activity
TRQ7_00375	COG0009	L-threonylcarbamoyladenylate synthase
TRQ7_00385	COG1420	regulation of RNA biosynthetic process
TRQ7_00390	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
TRQ7_00395	COG0484	heat shock protein binding
TRQ7_00400	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
TRQ7_00405	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
TRQ7_00410	COG0295	cytidine deaminase activity
TRQ7_00415	COG4535	Mg2 and Co2 transporter CorC
TRQ7_00420	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
TRQ7_00430	COG2201	protein-glutamate methylesterase activity
TRQ7_00445	COG0772	Belongs to the SEDS family
TRQ7_00455	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
TRQ7_00460	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
TRQ7_00465	COG0849	cell division
TRQ7_00475	COG0187	DNA topoisomerase II activity
TRQ7_00485	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
TRQ7_00490	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ7_00505	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TRQ7_00515	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
TRQ7_00525	COG1309	transcriptional regulator
TRQ7_00530	COG0072	phenylalanine-tRNA ligase activity
TRQ7_00530	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ7_00535	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
TRQ7_00545	COG1979	alcohol dehydrogenase
TRQ7_00555	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
TRQ7_00575	COG0534	Mate efflux family protein
TRQ7_00585	COG2222	sugar isomerase
TRQ7_00590	COG0395	ABC-type sugar transport system, permease component
TRQ7_00605	COG1472	Belongs to the glycosyl hydrolase 3 family
TRQ7_00615	COG0450	alkyl hydroperoxide reductase
TRQ7_00625	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ7_00630	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
TRQ7_00635	COG0504	CTP synthase activity
TRQ7_00640	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
TRQ7_00645	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
TRQ7_00650	COG2070	2-Nitropropane dioxygenase
TRQ7_00655	COG1268	BioY protein
TRQ7_00660	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
TRQ7_00665	COG2045	Belongs to the ComB family
TRQ7_00685	COG1131	(ABC) transporter
TRQ7_00690	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
TRQ7_00695	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
TRQ7_00700	COG1992	Thiamine-phosphate synthase
TRQ7_00700	COG0351	phosphomethylpyrimidine kinase
TRQ7_00710	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
TRQ7_00715	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
TRQ7_00725	COG1659	Linocin_M18 bacteriocin protein
TRQ7_00785	COG1774	PSP1 C-terminal conserved region
TRQ7_00800	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
TRQ7_00805	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
TRQ7_00810	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
TRQ7_00830	COG0393	Putative heavy-metal-binding
TRQ7_00835	COG0052	Belongs to the universal ribosomal protein uS2 family
TRQ7_00865	COG0457	Tetratricopeptide repeat
TRQ7_00865	COG0463	Glycosyl transferase, family 2
TRQ7_00880	COG0426	domain, Protein
TRQ7_00885	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TRQ7_00890	COG2226	methyltransferase
TRQ7_00895	COG1486	melibiose metabolic process
TRQ7_00905	COG0572	uridine kinase
TRQ7_00920	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TRQ7_00925	COG0793	Belongs to the peptidase S41A family
TRQ7_00940	COG0438	transferase activity, transferring glycosyl groups
TRQ7_00950	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
TRQ7_00955	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
TRQ7_00960	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
TRQ7_00965	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ7_00965	COG2199	diguanylate cyclase activity
TRQ7_00980	COG1482	cell wall glycoprotein biosynthetic process
TRQ7_00990	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
TRQ7_01005	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
TRQ7_01010	COG1490	D-aminoacyl-tRNA deacylase activity
TRQ7_01015	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
TRQ7_01030	COG0312	modulator of DNA gyrase
TRQ7_01035	COG0312	modulator of DNA gyrase
TRQ7_01055	COG0557	exoribonuclease II activity
TRQ7_01060	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
TRQ7_01065	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
TRQ7_01070	COG0215	cysteine-tRNA ligase activity
TRQ7_01075	COG0835	chemotaxis
TRQ7_01080	COG0511	ligase activity, forming carbon-carbon bonds
TRQ7_01090	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
TRQ7_01125	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
TRQ7_01130	COG0095	Lipoate-protein ligase
TRQ7_01135	COG0357	Ribosomal RNA small subunit methyltransferase G
TRQ7_01150	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TRQ7_01155	COG1546	Belongs to the CinA family
TRQ7_01155	COG1058	Belongs to the CinA family
TRQ7_01160	COG0643	Histidine kinase
TRQ7_01160	COG2198	Histidine kinase
TRQ7_01165	COG0835	chemotaxis
TRQ7_01170	COG2201	protein-glutamate methylesterase activity
TRQ7_01180	COG1338	Plays a role in the flagellum-specific transport system
TRQ7_01195	COG0740	serine-type endopeptidase activity
TRQ7_01200	COG0544	peptidyl-prolyl cis-trans isomerase activity
TRQ7_01210	COG0736	holo-[acyl-carrier-protein] synthase activity
TRQ7_01225	COG0126	phosphoglycerate kinase activity
TRQ7_01225	COG0149	triose-phosphate isomerase activity
TRQ7_01230	COG0149	triose-phosphate isomerase activity
TRQ7_01230	COG0126	phosphoglycerate kinase activity
TRQ7_01235	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
TRQ7_01240	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
TRQ7_01245	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
TRQ7_01275	COG1776	CheC inhibitor of MCP methylation
TRQ7_01275	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ7_01280	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ7_01290	COG1360	Flagellar Motor Protein
TRQ7_01300	COG1582	Flagellar protein (FlbD)
TRQ7_01305	COG1749	Flagellar hook protein flgE
TRQ7_01340	COG0084	hydrolase, TatD family'
TRQ7_01345	COG1045	serine acetyltransferase
TRQ7_01350	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
TRQ7_01365	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TRQ7_01375	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
TRQ7_01380	COG1773	rubredoxin
TRQ7_01385	COG2033	superoxide reductase activity
TRQ7_01390	COG1592	Rubrerythrin
TRQ7_01435	COG1476	TRANSCRIPTIONal
TRQ7_01440	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
TRQ7_01445	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
TRQ7_01450	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ7_01460	COG0561	phosphatase activity
TRQ7_01480	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
TRQ7_01490	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ7_01520	COG1596	polysaccharide export
TRQ7_01545	COG3951	Flagellar rod assembly protein muramidase FlgJ
TRQ7_01545	COG1705	Flagellar rod assembly protein muramidase FlgJ
TRQ7_01550	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
TRQ7_01560	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
TRQ7_01600	COG0463	Glycosyl transferase, family 2
TRQ7_01600	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
TRQ7_01625	COG2046	Belongs to the sulfate adenylyltransferase family
TRQ7_01635	COG0471	metal ion transport
TRQ7_01645	COG0613	PHP domain protein
TRQ7_01650	COG0529	Catalyzes the synthesis of activated sulfate
TRQ7_01700	COG4695	Portal protein
TRQ7_01716	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
TRQ7_01735	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ7_01755	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TRQ7_01770	COG0629	single-stranded DNA binding
TRQ7_01775	COG0360	Binds together with S18 to 16S ribosomal RNA
TRQ7_01800	COG0395	ABC-type sugar transport system, permease component
TRQ7_01805	COG1175	transmembrane transport
TRQ7_01815	COG2252	PERMEase
TRQ7_01830	COG1126	abc transporter atp-binding protein
TRQ7_01850	COG1077	Cell shape determining protein MreB Mrl
TRQ7_01855	COG0517	IMP dehydrogenase activity
TRQ7_01855	COG1227	inorganic diphosphatase activity
TRQ7_01860	COG0697	spore germination
TRQ7_01890	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
TRQ7_01895	COG0037	tRNA processing
TRQ7_01910	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
TRQ7_01915	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
TRQ7_01920	COG2176	DNA-directed DNA polymerase activity
TRQ7_01925	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
TRQ7_01930	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
TRQ7_01935	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TRQ7_01940	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
TRQ7_01945	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
TRQ7_01950	COG0552	protein localization to endoplasmic reticulum
TRQ7_01960	COG3584	3D domain protein
TRQ7_01965	COG1959	2 iron, 2 sulfur cluster binding
TRQ7_01975	COG1489	DNA binding
TRQ7_02000	COG1181	Belongs to the D-alanine--D-alanine ligase family
TRQ7_02005	COG0598	Magnesium transport protein CorA
TRQ7_02020	COG0505	Belongs to the CarA family
TRQ7_02025	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
TRQ7_02030	COG0473	3-isopropylmalate dehydrogenase activity
TRQ7_02035	COG0066	3-isopropylmalate dehydratase activity
TRQ7_02040	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TRQ7_02045	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TRQ7_02050	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TRQ7_02055	COG0129	dihydroxy-acid dehydratase activity
TRQ7_02060	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
TRQ7_02065	COG0440	acetolactate synthase activity
TRQ7_02070	COG0028	Belongs to the TPP enzyme family
TRQ7_02075	COG0527	aspartate kinase activity
TRQ7_02080	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
TRQ7_02085	COG0083	homoserine kinase activity
TRQ7_02090	COG1131	(ABC) transporter
TRQ7_02105	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
TRQ7_02105	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
TRQ7_02115	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
TRQ7_02125	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
TRQ7_02135	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
TRQ7_02150	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TRQ7_02155	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ7_02160	COG0601	transmembrane transport
TRQ7_02165	COG0747	negative chemotaxis
TRQ7_02170	COG4608	Belongs to the ABC transporter superfamily
TRQ7_02180	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
TRQ7_02185	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
TRQ7_02195	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
TRQ7_02215	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
TRQ7_02220	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
TRQ7_02225	COG0482	sulfurtransferase activity
TRQ7_02250	COG1242	4 iron, 4 sulfur cluster binding
TRQ7_02255	COG0442	prolyl-tRNA aminoacylation
TRQ7_02260	COG0606	chelatase, subunit chli
TRQ7_02270	COG1573	uracil-dna glycosylase
TRQ7_02285	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
TRQ7_02285	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
TRQ7_02300	COG0601	transmembrane transport
TRQ7_02305	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ7_02310	COG0444	Belongs to the ABC transporter superfamily
TRQ7_02315	COG4608	Belongs to the ABC transporter superfamily
TRQ7_02325	COG0444	Belongs to the ABC transporter superfamily
TRQ7_02335	COG2176	DNA-directed DNA polymerase activity
TRQ7_02340	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
TRQ7_02345	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
TRQ7_02355	COG0180	Tryptophanyl-tRNA synthetase
TRQ7_02365	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
TRQ7_02370	COG1595	DNA-templated transcription, initiation
TRQ7_02375	COG2890	protein-(glutamine-N5) methyltransferase activity
TRQ7_02380	COG2151	metal-sulfur cluster biosynthetic enzyme
TRQ7_02390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TRQ7_02395	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TRQ7_02400	COG1116	anion transmembrane transporter activity
TRQ7_02430	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
TRQ7_02435	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TRQ7_02440	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
TRQ7_02445	COG1196	nuclear chromosome segregation
TRQ7_02460	COG1335	isochorismatase
TRQ7_02470	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
TRQ7_02475	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
TRQ7_02495	COG0745	RESPONSE REGULATOR receiver
TRQ7_02515	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
TRQ7_02520	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
TRQ7_02525	COG0564	pseudouridine synthase activity
TRQ7_02530	COG0587	DNA-directed DNA polymerase activity
TRQ7_02540	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
TRQ7_02550	COG0222	ribosome binding
TRQ7_02555	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
TRQ7_02560	COG0081	regulation of translation
TRQ7_02565	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
TRQ7_02570	COG0250	Participates in transcription elongation, termination and antitermination
TRQ7_02575	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TRQ7_02610	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
TRQ7_02615	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TRQ7_02620	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
TRQ7_02625	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
TRQ7_02635	COG1027	Aspartate ammonia-lyase
TRQ7_02640	COG1070	Carbohydrate kinase
TRQ7_02650	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ7_02660	COG1802	Transcriptional regulator
TRQ7_02665	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
TRQ7_02680	COG1486	melibiose metabolic process
TRQ7_02695	COG1175	transmembrane transport
TRQ7_02700	COG0395	ABC-type sugar transport system, permease component
TRQ7_02705	COG0840	transmembrane signaling receptor activity
TRQ7_02710	COG1902	pentaerythritol trinitrate reductase activity
TRQ7_02735	COG0371	Dehydrogenase
TRQ7_02745	COG3842	ATPase activity
TRQ7_02750	COG3833	ABC-type maltose transport systems, permease component
TRQ7_02755	COG1175	transmembrane transport
TRQ7_02765	COG1082	Xylose isomerase domain protein TIM barrel
TRQ7_02775	COG0673	inositol 2-dehydrogenase activity
TRQ7_02780	COG1402	creatininase
TRQ7_02785	COG1063	alcohol dehydrogenase
TRQ7_02800	COG0739	heme binding
TRQ7_02805	COG2201	protein-glutamate methylesterase activity
TRQ7_02820	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ7_02830	COG0347	Belongs to the P(II) protein family
TRQ7_02835	COG0004	ammonium transporteR
TRQ7_02845	COG3850	Histidine kinase
TRQ7_02845	COG5002	protein histidine kinase activity
TRQ7_02860	COG0067	glutamate synthase
TRQ7_02865	COG0069	glutamate synthase activity
TRQ7_02865	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
TRQ7_02870	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ7_02870	COG0493	'glutamate synthase
TRQ7_02875	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TRQ7_02890	COG0438	transferase activity, transferring glycosyl groups
TRQ7_02895	COG1136	(ABC) transporter
TRQ7_02895	COG0577	efflux transmembrane transporter activity
TRQ7_02900	COG1136	(ABC) transporter
TRQ7_02905	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
TRQ7_02920	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
TRQ7_02935	COG1597	lipid kinase activity
TRQ7_02945	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ7_02950	COG3956	TIGRFAM MazG family protein
TRQ7_02960	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
TRQ7_02980	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
TRQ7_03000	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
TRQ7_03005	COG1438	arginine binding
TRQ7_03015	COG0443	Heat shock 70 kDa protein
TRQ7_03020	COG0071	Belongs to the small heat shock protein (HSP20) family
TRQ7_03025	COG4869	propanediol catabolic process
TRQ7_03030	COG0730	response to heat
TRQ7_03050	COG0778	Nitroreductase
TRQ7_03055	COG1328	CTP reductase activity
TRQ7_03065	COG0778	Nitroreductase
TRQ7_03070	COG1194	a g-specific adenine glycosylase
TRQ7_03085	COG0446	pyridine nucleotide-disulphide oxidoreductase
TRQ7_03090	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
TRQ7_03105	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
TRQ7_03110	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
TRQ7_03110	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
TRQ7_03115	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
TRQ7_03120	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
TRQ7_03125	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
TRQ7_03135	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
TRQ7_03165	COG1032	radical SAM domain protein
TRQ7_03170	COG1073	alpha beta
TRQ7_03175	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
TRQ7_03180	COG0543	2 iron, 2 sulfur cluster binding
TRQ7_03185	COG0167	dihydroorotate dehydrogenase activity
TRQ7_03190	COG0284	orotidine-5'-phosphate decarboxylase activity
TRQ7_03195	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
TRQ7_03200	COG1574	metal-dependent hydrolase with the TIM-barrel fold
TRQ7_03215	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TRQ7_03220	COG1737	Transcriptional regulator
TRQ7_03225	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ7_03230	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TRQ7_03240	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TRQ7_03260	COG2226	methyltransferase
TRQ7_03265	COG2217	Heavy metal translocating P-type atpase
TRQ7_03285	COG0667	Aldo Keto reductase
TRQ7_03305	COG0747	negative chemotaxis
TRQ7_03310	COG1501	Belongs to the glycosyl hydrolase 31 family
TRQ7_03330	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
TRQ7_03335	COG1063	alcohol dehydrogenase
TRQ7_03340	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ7_03345	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
TRQ7_03350	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
TRQ7_03355	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
TRQ7_03365	COG0066	3-isopropylmalate dehydratase activity
TRQ7_03370	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TRQ7_03375	COG0372	Belongs to the citrate synthase family
TRQ7_03380	COG0205	6-phosphofructokinase activity
TRQ7_03385	COG1132	(ABC) transporter
TRQ7_03390	COG1132	(ABC) transporter
TRQ7_03400	COG0371	Dehydrogenase
TRQ7_03405	COG1070	Carbohydrate kinase
TRQ7_03415	COG1129	ABC transporter
TRQ7_03420	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ7_03425	COG1879	ABC-type sugar transport system periplasmic component
TRQ7_03450	COG0395	ABC-type sugar transport system, permease component
TRQ7_03455	COG1175	transmembrane transport
TRQ7_03465	COG3507	Belongs to the glycosyl hydrolase 43 family
TRQ7_03480	COG0395	ABC-type sugar transport system, permease component
TRQ7_03485	COG1175	transmembrane transport
TRQ7_03505	COG1175	transmembrane transport
TRQ7_03515	COG2160	L-arabinose isomerase activity
TRQ7_03525	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
TRQ7_03530	COG0191	fructose-bisphosphate aldolase activity
TRQ7_03535	COG0574	Belongs to the PEP-utilizing enzyme family
TRQ7_03535	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TRQ7_03545	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
TRQ7_03545	COG0646	methionine synthase
TRQ7_03555	COG0646	methionine synthase
TRQ7_03555	COG1410	methionine synthase
TRQ7_03560	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
TRQ7_03565	COG0776	regulation of translation
TRQ7_03575	COG1187	pseudouridine synthase activity
TRQ7_03585	COG0592	DNA-directed DNA polymerase activity
TRQ7_03590	COG0306	phosphate transporter
TRQ7_03600	COG1181	Belongs to the D-alanine--D-alanine ligase family
TRQ7_03605	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
TRQ7_03620	COG0227	Belongs to the bacterial ribosomal protein bL28 family
TRQ7_03625	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
TRQ7_03630	COG0792	nuclease activity
TRQ7_03635	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TRQ7_03640	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
TRQ7_03645	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TRQ7_03645	COG0758	DNA mediated transformation
TRQ7_03655	COG4657	Part of a membrane complex involved in electron transport
TRQ7_03660	COG4660	Part of a membrane complex involved in electron transport
TRQ7_03665	COG4659	FMN binding
TRQ7_03670	COG4658	electron transport chain
TRQ7_03675	COG4656	Part of a membrane complex involved in electron transport
TRQ7_03680	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ7_03695	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
TRQ7_03700	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
TRQ7_03710	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
TRQ7_03715	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
TRQ7_03720	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ7_03725	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
TRQ7_03730	COG0772	Belongs to the SEDS family
TRQ7_03735	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
TRQ7_03740	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
TRQ7_03770	COG2515	1-aminocyclopropane-1-carboxylate deaminase
TRQ7_03775	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
TRQ7_03775	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
TRQ7_03785	COG1122	ATPase activity
TRQ7_03790	COG1766	The M ring may be actively involved in energy transduction
TRQ7_03795	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ7_03805	COG1157	protein secretion by the type III secretion system
TRQ7_03810	COG0751	glycine-tRNA ligase activity
TRQ7_03815	COG0752	glycyl-tRNA synthetase alpha subunit
TRQ7_03820	COG0251	oxidation-reduction process
TRQ7_03825	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
TRQ7_03835	COG0509	glycine decarboxylation via glycine cleavage system
TRQ7_03840	COG0404	The glycine cleavage system catalyzes the degradation of glycine
TRQ7_03850	COG0205	6-phosphofructokinase activity
TRQ7_03855	COG0469	pyruvate kinase activity
TRQ7_03860	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TRQ7_03870	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
TRQ7_03875	COG1116	anion transmembrane transporter activity
TRQ7_03880	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TRQ7_03895	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
TRQ7_03900	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
TRQ7_03905	COG0542	response to heat
TRQ7_03910	COG0037	tRNA processing
TRQ7_03940	COG1122	ATPase activity
TRQ7_03945	COG0390	transport system, permease component
TRQ7_03970	COG2359	stage V sporulation protein S
TRQ7_03980	COG1120	ATPase activity
TRQ7_03985	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
TRQ7_03995	COG1720	tRNA m6t6A37 methyltransferase activity
TRQ7_04015	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
TRQ7_04020	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TRQ7_04020	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ7_04025	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ7_04070	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
TRQ7_04075	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
TRQ7_04085	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TRQ7_04090	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
TRQ7_04095	COG1110	DNA topoisomerase II activity
TRQ7_04100	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
TRQ7_04105	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
TRQ7_04115	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
TRQ7_04120	COG0495	leucyl-tRNA aminoacylation
TRQ7_04125	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
TRQ7_04130	COG0285	dihydrofolate synthase activity
TRQ7_04135	COG0632	four-way junction helicase activity
TRQ7_04165	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
TRQ7_04170	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
TRQ7_04185	COG1785	Belongs to the alkaline phosphatase family
TRQ7_04215	COG0333	Belongs to the bacterial ribosomal protein bL32 family
TRQ7_04220	COG0416	fatty acid biosynthetic process
TRQ7_04225	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
TRQ7_04230	COG0799	negative regulation of ribosome biogenesis
TRQ7_04235	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
TRQ7_04240	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
TRQ7_04260	COG3706	GGDEF domain
TRQ7_04260	COG0745	RESPONSE REGULATOR receiver
TRQ7_04265	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
TRQ7_04270	COG0512	Glutamine amidotransferase of anthranilate synthase
TRQ7_04270	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TRQ7_04275	COG0134	indole-3-glycerol-phosphate synthase activity
TRQ7_04280	COG0135	phosphoribosylanthranilate isomerase activity
TRQ7_04285	COG0133	tryptophan synthase activity
TRQ7_04290	COG0159	tryptophan synthase activity
TRQ7_04295	COG0820	rRNA (adenine-C2-)-methyltransferase activity
TRQ7_04305	COG0492	ferredoxin-NADP+ reductase activity
TRQ7_04310	COG1335	isochorismatase
TRQ7_04315	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
TRQ7_04340	COG0745	RESPONSE REGULATOR receiver
TRQ7_04345	COG1108	ABC-type Mn2 Zn2 transport systems permease components
TRQ7_04350	COG1121	(ABC) transporter
TRQ7_04355	COG0803	Belongs to the bacterial solute-binding protein 9 family
TRQ7_04365	COG1509	lysine 2,3-aminomutase activity
TRQ7_04370	COG0778	Nitroreductase
TRQ7_04390	COG1070	Carbohydrate kinase
TRQ7_04395	COG1129	ABC transporter
TRQ7_04410	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ7_04420	COG1940	carbohydrate kinase activity
TRQ7_04430	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
TRQ7_04460	COG1744	ABC transporter substrate-binding protein PnrA-like
TRQ7_04470	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TRQ7_04480	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
TRQ7_04490	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
TRQ7_04490	COG3116	cell division
TRQ7_04535	COG1355	regulation of microtubule-based process
TRQ7_04540	COG0728	peptidoglycan biosynthetic process
TRQ7_04555	COG1256	bacterial-type flagellum assembly
TRQ7_04555	COG4786	Flagellar basal body rod
TRQ7_04555	COG1256	bacterial-type flagellum assembly
TRQ7_04555	COG4786	Flagellar basal body rod
TRQ7_04560	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
TRQ7_04565	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
TRQ7_04570	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
TRQ7_04575	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
TRQ7_04580	COG1120	ATPase activity
TRQ7_04585	COG3458	cephalosporin-C deacetylase activity
TRQ7_04600	COG4608	Belongs to the ABC transporter superfamily
TRQ7_04605	COG0444	Belongs to the ABC transporter superfamily
TRQ7_04610	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ7_04615	COG0601	transmembrane transport
TRQ7_04635	COG0246	Mannitol dehydrogenase
TRQ7_04645	COG0800	Aldolase
TRQ7_04650	COG1414	Transcriptional regulator
TRQ7_04655	COG1904	glucuronate isomerase
TRQ7_04670	COG0601	transmembrane transport
TRQ7_04675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ7_04680	COG0444	Belongs to the ABC transporter superfamily
TRQ7_04685	COG4608	Belongs to the ABC transporter superfamily
TRQ7_04690	COG4166	transmembrane transport
TRQ7_04695	COG3661	Belongs to the glycosyl hydrolase 67 family
TRQ7_04715	COG1918	ferrous iron import across plasma membrane
TRQ7_04715	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
TRQ7_04725	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ7_04740	COG1132	(ABC) transporter
TRQ7_04745	COG0006	proline dipeptidase activity
TRQ7_04750	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
TRQ7_04750	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
TRQ7_04755	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
TRQ7_04760	COG1469	GTP cyclohydrolase I activity
TRQ7_04765	COG0720	synthase
TRQ7_04770	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ7_04800	COG4166	transmembrane transport
TRQ7_04805	COG0601	transmembrane transport
TRQ7_04815	COG4608	Belongs to the ABC transporter superfamily
TRQ7_04820	COG4608	Belongs to the ABC transporter superfamily
TRQ7_04840	COG0840	transmembrane signaling receptor activity
TRQ7_04855	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
TRQ7_04860	COG1993	acr, cog1993
TRQ7_04865	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
TRQ7_04870	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ7_04875	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ7_04880	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ7_04885	COG1144	Oxidoreductase
TRQ7_04890	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ7_04895	COG0840	transmembrane signaling receptor activity
TRQ7_04930	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
TRQ7_04940	COG4948	Mandelate Racemase Muconate Lactonizing
TRQ7_04960	COG1353	crispr-associated protein
TRQ7_05015	COG1518	maintenance of DNA repeat elements
TRQ7_05020	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
TRQ7_05040	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TRQ7_05050	COG2813	Specifically methylates the guanine in position
TRQ7_05055	COG1122	ATPase activity
TRQ7_05060	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
TRQ7_05065	COG0242	peptide deformylase activity
TRQ7_05080	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
TRQ7_05085	COG0268	Binds directly to 16S ribosomal RNA
TRQ7_05095	COG0745	RESPONSE REGULATOR receiver
TRQ7_05100	COG5002	protein histidine kinase activity
TRQ7_05115	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TRQ7_05130	COG1713	HD superfamily hydrolase involved in NAD metabolism
TRQ7_05150	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
TRQ7_05155	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
TRQ7_05175	COG0525	valine-tRNA ligase activity
TRQ7_05180	COG2059	Chromate
TRQ7_05190	COG0519	Catalyzes the synthesis of GMP from XMP
TRQ7_05190	COG0518	GMP synthase (glutamine-hydrolyzing) activity
TRQ7_05195	COG1059	Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites)
TRQ7_05200	COG0330	HflC and HflK could
TRQ7_05205	COG0330	HflC and HflK could
TRQ7_05215	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
TRQ7_05220	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TRQ7_05220	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TRQ7_05225	COG0307	riboflavin synthase, alpha
TRQ7_05230	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TRQ7_05230	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TRQ7_05250	COG1175	transmembrane transport
TRQ7_05260	COG0366	Alpha amylase catalytic
TRQ7_05280	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
TRQ7_05285	COG1523	belongs to the glycosyl hydrolase 13 family
TRQ7_05295	COG1940	carbohydrate kinase activity
TRQ7_05300	COG1129	ABC transporter
TRQ7_05305	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ7_05325	COG1653	transport
TRQ7_05335	COG2723	6-phospho-beta-galactosidase activity
TRQ7_05340	COG3459	Glycosyltransferase 36 associated
TRQ7_05365	COG0395	ABC-type sugar transport system, permease component
TRQ7_05370	COG1175	transmembrane transport
TRQ7_05385	COG1418	mRNA catabolic process
TRQ7_05390	COG2137	regulation of response to DNA damage stimulus
TRQ7_05395	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
TRQ7_05400	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
TRQ7_05405	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TRQ7_05425	COG1515	deoxyribonuclease V activity
TRQ7_05440	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
TRQ7_05445	COG1067	ATP-dependent peptidase activity
TRQ7_05450	COG2894	cell division
TRQ7_05460	COG0432	Pfam Uncharacterised protein family UPF0047
TRQ7_05470	COG1278	Cold shock
TRQ7_05480	COG0622	Phosphoesterase
TRQ7_05490	COG0737	Belongs to the 5'-nucleotidase family
TRQ7_05500	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
TRQ7_05500	COG0540	Belongs to the ATCase OTCase family
TRQ7_05505	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
TRQ7_05515	COG0543	2 iron, 2 sulfur cluster binding
TRQ7_05530	COG0419	ATPase involved in DNA repair
TRQ7_05545	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TRQ7_05550	COG0802	atpase or kinase
TRQ7_05565	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
TRQ7_05570	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
TRQ7_05575	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
TRQ7_05580	COG0193	aminoacyl-tRNA hydrolase activity
TRQ7_05590	COG3250	beta-galactosidase activity
TRQ7_05595	COG0481	GTPase activity
TRQ7_05605	COG0584	glycerophosphoryl diester phosphodiesterase
TRQ7_05611	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TRQ7_05611	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TRQ7_05625	COG1406	Chemotaxis phosphatase CheX
TRQ7_05640	COG0356	it plays a direct role in the translocation of protons across the membrane
TRQ7_05645	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TRQ7_05650	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TRQ7_05655	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TRQ7_05660	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
TRQ7_05665	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
TRQ7_05670	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
TRQ7_05675	COG0355	proton-transporting ATP synthase activity, rotational mechanism
TRQ7_05680	COG1307	EDD domain protein, DegV family
TRQ7_05690	COG1530	ribonuclease E activity
TRQ7_05695	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
TRQ7_05700	COG0528	UMP kinase activity
TRQ7_05705	COG0477	Major facilitator Superfamily
TRQ7_05710	COG1827	regulation of RNA biosynthetic process
TRQ7_05715	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ7_05730	COG1595	DNA-templated transcription, initiation
TRQ7_05735	COG3457	Alanine racemase
TRQ7_05745	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
TRQ7_05750	COG3706	GGDEF domain
TRQ7_05755	COG0489	protein tyrosine kinase activity
TRQ7_05760	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
TRQ7_05765	COG0291	Belongs to the bacterial ribosomal protein bL35 family
TRQ7_05770	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
TRQ7_05790	COG1278	Cold shock
TRQ7_05800	COG1185	polyribonucleotide nucleotidyltransferase activity
TRQ7_05805	COG1376	ErfK ybiS ycfS ynhG family protein
TRQ7_05810	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
TRQ7_05815	COG1758	RNA polymerase activity
TRQ7_05820	COG0194	GDP metabolic process
TRQ7_05825	COG2052	Domain of unknown function (DUF370)
TRQ7_05830	COG1561	YicC-like family, N-terminal region
TRQ7_05845	COG0301	tRNA thio-modification
TRQ7_05860	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
TRQ7_05870	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ7_05890	COG1368	sulfuric ester hydrolase activity
TRQ7_05900	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
TRQ7_05905	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
TRQ7_05910	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
TRQ7_05920	COG0391	Required for morphogenesis under gluconeogenic growth conditions
TRQ7_05925	COG1660	Displays ATPase and GTPase activities
TRQ7_05940	COG1739	Uncharacterized protein family UPF0029
TRQ7_05950	COG0820	rRNA (adenine-C2-)-methyltransferase activity
TRQ7_05960	COG1162	GTPase activity
TRQ7_05965	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
TRQ7_05970	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
TRQ7_05975	COG2153	protein acetylation
TRQ7_05990	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
TRQ7_05995	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ7_06015	COG1269	ATP hydrolysis coupled proton transport
TRQ7_06035	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
TRQ7_06040	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
TRQ7_06045	COG1394	ATPase activity, coupled to movement of substances
TRQ7_06060	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
TRQ7_06070	COG2255	four-way junction helicase activity
TRQ7_06075	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
TRQ7_06085	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
TRQ7_06090	COG0704	Plays a role in the regulation of phosphate uptake
TRQ7_06100	COG0305	Participates in initiation and elongation during chromosome replication
TRQ7_06105	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TRQ7_06120	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
TRQ7_06125	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TRQ7_06130	COG0647	UMP catabolic process
TRQ7_06135	COG0667	Aldo Keto reductase
TRQ7_06150	COG3426	butyrate kinase activity
TRQ7_06155	COG0280	phosphate acetyltransferase
TRQ7_06160	COG3426	butyrate kinase activity
TRQ7_06190	COG0556	nucleotide-excision repair
TRQ7_06200	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
TRQ7_06210	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TRQ7_06215	COG2759	Belongs to the formate--tetrahydrofolate ligase family
TRQ7_06220	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
TRQ7_06225	COG1570	exodeoxyribonuclease VII activity
TRQ7_06230	COG1722	exodeoxyribonuclease VII activity
TRQ7_06235	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
TRQ7_06255	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
TRQ7_06265	COG0735	belongs to the Fur family
TRQ7_06270	COG0195	Participates in both transcription termination and antitermination
TRQ7_06275	COG0779	Required for maturation of 30S ribosomal subunits
TRQ7_06290	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
TRQ7_06295	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
TRQ7_06300	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
TRQ7_06305	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
TRQ7_06310	COG2171	N-acyltransferase activity
TRQ7_06320	COG0019	diaminopimelate decarboxylase activity
TRQ7_06325	COG1473	amidohydrolase
TRQ7_06340	COG1323	Belongs to the UPF0348 family
TRQ7_06345	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TRQ7_06345	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
TRQ7_06350	COG2738	Putative neutral zinc metallopeptidase
TRQ7_06360	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
TRQ7_06365	COG1480	7TM receptor with intracellular HD hydrolase
TRQ7_06370	COG1702	phosphate starvation-inducible protein PhoH
TRQ7_06380	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
TRQ7_06385	COG0049	tRNA binding
TRQ7_06390	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TRQ7_06395	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TRQ7_06400	COG0051	transcription antitermination factor activity, RNA binding
TRQ7_06405	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
TRQ7_06410	COG0088	Forms part of the polypeptide exit tunnel
TRQ7_06415	COG0089	rRNA binding
TRQ7_06420	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
TRQ7_06425	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
TRQ7_06430	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
TRQ7_06435	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
TRQ7_06440	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
TRQ7_06445	COG0255	Belongs to the universal ribosomal protein uL29 family
TRQ7_06450	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
TRQ7_06455	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
TRQ7_06460	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
TRQ7_06470	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
TRQ7_06475	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
TRQ7_06480	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
TRQ7_06485	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
TRQ7_06490	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
TRQ7_06495	COG1841	ribosomal large subunit assembly
TRQ7_06500	COG0200	Binds to the 23S rRNA
TRQ7_06505	COG0201	protein transport
TRQ7_06515	COG0024	Methionine aminopeptidase
TRQ7_06520	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
TRQ7_06525	COG0257	Belongs to the bacterial ribosomal protein bL36 family
TRQ7_06530	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
TRQ7_06535	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
TRQ7_06540	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
TRQ7_06545	COG0202	RNA polymerase activity
TRQ7_06550	COG0203	ribosomal protein L17
TRQ7_06555	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
TRQ7_06560	COG1940	carbohydrate kinase activity
TRQ7_06565	COG1307	EDD domain protein, DegV family
TRQ7_06585	COG0218	Necessary for normal cell division and for the maintenance of normal septation
TRQ7_06590	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
TRQ7_06595	COG2313	pseudouridylate synthase activity
TRQ7_06600	COG0230	Belongs to the bacterial ribosomal protein bL34 family
TRQ7_06605	COG0594	ribonuclease P activity
TRQ7_06610	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
TRQ7_06615	COG0706	membrane insertase activity
TRQ7_06630	COG0261	This protein binds to 23S rRNA in the presence of protein L20
TRQ7_06640	COG0211	Belongs to the bacterial ribosomal protein bL27 family
TRQ7_06645	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
TRQ7_06650	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
TRQ7_06655	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
TRQ7_06660	COG0358	DNA primase activity
TRQ7_06665	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TRQ7_06670	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
TRQ7_06675	COG3063	Type IV pilus biogenesis stability protein PilW
TRQ7_06685	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TRQ7_06690	COG1160	GTP binding
TRQ7_06695	COG0539	negative regulation of cytoplasmic translation
TRQ7_06695	COG2183	response to ionizing radiation
TRQ7_06700	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
TRQ7_06705	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
TRQ7_06710	COG1366	Belongs to the anti-sigma-factor antagonist family
TRQ7_06715	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
TRQ7_06720	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TRQ7_06730	COG1543	Belongs to the glycosyl hydrolase 57 family
TRQ7_06735	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
TRQ7_06765	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
TRQ7_06775	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
TRQ7_06780	COG0840	transmembrane signaling receptor activity
TRQ7_06785	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
TRQ7_06800	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TRQ7_06815	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TRQ7_06830	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TRQ7_06830	COG1213	nucleotidyl transferase
TRQ7_06840	COG0719	Fe-S assembly protein
TRQ7_06850	COG0483	inositol monophosphate 1-phosphatase activity
TRQ7_06855	COG1621	beta-fructofuranosidase activity
TRQ7_06875	COG0438	transferase activity, transferring glycosyl groups
TRQ7_06880	COG2342	PFAM TM1410 hypothetical-related protein
TRQ7_06905	COG0438	transferase activity, transferring glycosyl groups
TRQ7_06910	COG3437	response regulator, receiver
TRQ7_06940	COG1434	Gram-negative-bacterium-type cell wall biogenesis
TRQ7_06950	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ7_07020	COG1959	2 iron, 2 sulfur cluster binding
TRQ7_07025	COG1575	Belongs to the MenA family. Type 1 subfamily
TRQ7_07040	COG2086	electron transfer activity
TRQ7_07045	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
TRQ7_07050	COG0644	oxidoreductase
TRQ7_07075	COG1032	radical SAM domain protein
TRQ7_07085	COG1706	bacterial-type flagellum-dependent cell motility
TRQ7_07090	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
TRQ7_07105	COG4786	Flagellar basal body rod
TRQ7_07120	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
TRQ7_07125	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
TRQ7_07125	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
TRQ7_07130	COG1078	dGTPase activity
TRQ7_07140	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ7_07145	COG3872	metal-dependent enzyme
TRQ7_07150	COG2078	PFAM AMMECR1 domain protein
TRQ7_07160	COG1477	protein flavinylation
TRQ7_07175	COG0424	maF-like protein
TRQ7_07180	COG2003	Belongs to the UPF0758 family
TRQ7_07185	COG1418	mRNA catabolic process
TRQ7_07190	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
TRQ7_07200	COG0343	queuine tRNA-ribosyltransferase activity
TRQ7_07210	COG0668	transmembrane transport
TRQ7_07215	COG1254	Belongs to the acylphosphatase family
TRQ7_07220	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
TRQ7_07225	COG0228	four-way junction DNA binding
TRQ7_07230	COG1837	Belongs to the UPF0109 family
TRQ7_07235	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
TRQ7_07240	COG0336	Belongs to the RNA methyltransferase TrmD family
TRQ7_07245	COG4752	Belongs to the RNA methyltransferase TrmD family
TRQ7_07250	COG0335	large ribosomal subunit rRNA binding
TRQ7_07255	COG0681	Belongs to the peptidase S26 family
TRQ7_07265	COG0101	tRNA pseudouridine synthase activity
TRQ7_07275	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
TRQ7_07285	COG0653	protein targeting
TRQ7_07290	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
TRQ7_07315	COG1040	competence protein
TRQ7_07320	COG2379	hydroxypyruvate reductase
TRQ7_07335	COG2199	diguanylate cyclase activity
TRQ7_07385	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
TRQ7_07390	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
TRQ7_07395	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
TRQ7_07400	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
TRQ7_07405	COG0165	Argininosuccinate lyase
TRQ7_07410	COG0137	argininosuccinate synthase activity
TRQ7_07435	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TRQ7_07440	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
TRQ7_07445	COG0233	cytoplasmic translational termination
TRQ7_07450	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
TRQ7_07455	COG0575	Belongs to the CDS family
TRQ7_07460	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
TRQ7_07470	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
TRQ7_07475	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
TRQ7_07485	COG0542	response to heat
TRQ7_07505	COG2226	methyltransferase
TRQ7_07510	COG0742	ribosomal rna small subunit methyltransferase
TRQ7_07515	COG0237	dephospho-CoA kinase activity
TRQ7_07525	COG0166	Belongs to the GPI family
TRQ7_07530	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
TRQ7_07555	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
TRQ7_07560	COG1177	transmembrane transport
TRQ7_07565	COG1176	ABC-type spermidine putrescine transport system, permease component I
TRQ7_07570	COG3842	ATPase activity
TRQ7_07575	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
TRQ7_07585	COG0406	alpha-ribazole phosphatase activity
TRQ7_07595	COG0822	iron-sulfur transferase activity
TRQ7_07600	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
TRQ7_07605	COG1372	Participates in initiation and elongation during chromosome replication
TRQ7_07605	COG0719	Fe-S assembly protein
TRQ7_07610	COG0719	Fe-S assembly protein
TRQ7_07615	COG0396	ATPase activity
TRQ7_07630	COG1677	Flagellar hook-basal body complex protein FliE
TRQ7_07635	COG1558	bacterial-type flagellum-dependent cell motility
TRQ7_07640	COG1815	bacterial-type flagellum-dependent cell motility
TRQ7_07645	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
TRQ7_07655	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
TRQ7_07660	COG0745	RESPONSE REGULATOR receiver
TRQ7_07665	COG3852	Histidine kinase
TRQ7_07690	COG0516	GMP reductase activity
TRQ7_07690	COG0517	IMP dehydrogenase activity
TRQ7_07705	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
TRQ7_07710	COG2267	carboxylic ester hydrolase activity
TRQ7_07715	COG0628	permease
TRQ7_07725	COG0517	IMP dehydrogenase activity
TRQ7_07725	COG0516	GMP reductase activity
TRQ7_07730	COG0612	Peptidase, M16
TRQ7_07735	COG1185	polyribonucleotide nucleotidyltransferase activity
TRQ7_07740	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
TRQ7_07790	COG1132	(ABC) transporter
TRQ7_07795	COG1132	(ABC) transporter
TRQ7_07800	COG4555	ABC transporter
TRQ7_07815	COG0641	radical SAM
TRQ7_07830	COG1598	PFAM Uncharacterised protein family UPF0150
TRQ7_07840	COG1598	PFAM Uncharacterised protein family UPF0150
TRQ7_07845	COG1132	(ABC) transporter
TRQ7_07870	COG4555	ABC transporter
TRQ7_07890	COG0667	Aldo Keto reductase
TRQ7_07905	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TRQ7_07920	COG0662	Cupin 2, conserved barrel domain protein
TRQ7_07925	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
TRQ7_07930	COG1486	melibiose metabolic process
TRQ7_07945	COG1193	negative regulation of DNA recombination
TRQ7_07955	COG3842	ATPase activity
TRQ7_07970	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TRQ7_07975	COG0154	amidase activity
TRQ7_07990	COG0626	cystathionine gamma-synthase activity
TRQ7_07995	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ7_08020	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
TRQ7_08030	COG0573	inorganic phosphate transmembrane transporter activity
TRQ7_08035	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TRQ7_08040	COG0704	Plays a role in the regulation of phosphate uptake
TRQ7_08045	COG0745	RESPONSE REGULATOR receiver
TRQ7_08050	COG5002	protein histidine kinase activity
TRQ7_08060	COG1132	(ABC) transporter
TRQ7_08065	COG0436	Aminotransferase
TRQ7_08070	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TRQ7_08075	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TRQ7_08075	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ7_08085	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
TRQ7_08090	COG0151	Belongs to the GarS family
TRQ7_08095	COG0138	bifunctional purine biosynthesis protein purh
TRQ7_08100	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
TRQ7_08105	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
TRQ7_08110	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TRQ7_08115	COG0047	phosphoribosylformylglycinamidine synthase activity
TRQ7_08120	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TRQ7_08125	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
TRQ7_08140	COG0012	GTP binding
TRQ7_08150	COG0210	DNA helicase
TRQ7_08175	COG3842	ATPase activity
TRQ7_08180	COG0383	alpha-mannosidase activity
TRQ7_08185	COG0438	transferase activity, transferring glycosyl groups
TRQ7_08190	COG0463	Glycosyl transferase, family 2
TRQ7_08205	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
TRQ7_08210	COG1940	carbohydrate kinase activity
TRQ7_08215	COG4166	transmembrane transport
TRQ7_08220	COG0601	transmembrane transport
TRQ7_08225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ7_08230	COG0444	Belongs to the ABC transporter superfamily
TRQ7_08235	COG4608	Belongs to the ABC transporter superfamily
TRQ7_08250	COG0649	NAD binding
TRQ7_08255	COG0649	NAD binding
TRQ7_08255	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ7_08260	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ7_08275	COG0651	ATP synthesis coupled electron transport
TRQ7_08280	COG1006	Multisubunit Na H antiporter MnhC subunit
TRQ7_08285	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
TRQ7_08285	COG2111	Na H antiporter
TRQ7_08300	COG2212	antiporter activity
TRQ7_08305	COG1863	multisubunit Na H antiporter MnhE subunit
TRQ7_08310	COG2182	Extracellular solute-binding protein
TRQ7_08315	COG1175	transmembrane transport
TRQ7_08320	COG3833	ABC-type maltose transport systems, permease component
TRQ7_08345	COG0395	ABC-type sugar transport system, permease component
TRQ7_08355	COG0444	Belongs to the ABC transporter superfamily
TRQ7_08360	COG3250	beta-galactosidase activity
TRQ7_08365	COG3345	alpha-galactosidase
TRQ7_08370	COG1085	galactose-1-phosphate uridylyltransferase
TRQ7_08375	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
TRQ7_08400	COG0628	permease
TRQ7_08410	COG1803	Methylglyoxal synthase
TRQ7_08420	COG0667	Aldo Keto reductase
TRQ7_08425	COG1196	nuclear chromosome segregation
TRQ7_08430	COG0494	nUDIX hydrolase
TRQ7_08450	COG1011	Hydrolase
TRQ7_08470	COG1151	hydroxylamine reductase activity
TRQ7_08485	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ7_08490	COG0058	SHG alpha-glucan phosphorylase activity
TRQ7_08500	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TRQ7_08505	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ7_08510	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ7_08510	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ7_08515	COG3706	GGDEF domain
TRQ7_08520	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TRQ7_08525	COG2239	Acts as a magnesium transporter
TRQ7_08540	COG0010	Belongs to the arginase family
TRQ7_08555	COG1983	PspC domain protein
TRQ7_08560	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
TRQ7_08565	COG0363	glucosamine-6-phosphate deaminase activity
TRQ7_08575	COG0444	Belongs to the ABC transporter superfamily
TRQ7_08580	COG4608	Belongs to the ABC transporter superfamily
TRQ7_08585	COG0747	negative chemotaxis
TRQ7_08605	COG0785	Cytochrome C biogenesis protein
TRQ7_08620	COG0411	ABC transporter
TRQ7_08630	COG0559	Belongs to the binding-protein-dependent transport system permease family
TRQ7_08650	COG0714	Associated with various cellular activities
TRQ7_08655	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
TRQ7_08660	COG0280	phosphate acetyltransferase
TRQ7_08665	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
TRQ7_08695	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
TRQ7_08770	COG0651	ATP synthesis coupled electron transport
TRQ7_08780	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TRQ7_08785	COG0571	ribonuclease III activity
TRQ7_08800	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
TRQ7_08810	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
TRQ7_08815	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
TRQ7_08820	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
TRQ7_08830	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
TRQ7_08835	COG0018	arginyl-trna synthetase
TRQ7_08850	COG0124	histidyl-tRNA synthetase
TRQ7_08880	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ7_08880	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ7_08885	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
TRQ7_08890	COG1371	PFAM Archease protein family (DUF101 UPF0211)
TRQ7_08905	COG0698	ribose 5-phosphate isomerase
TRQ7_08945	COG1070	Carbohydrate kinase
TRQ7_08955	COG4952	isomerase
TRQ7_08975	COG1349	DNA-binding transcription factor activity
TRQ7_08980	COG1486	melibiose metabolic process
TRQ7_08985	COG0747	negative chemotaxis
TRQ7_08990	COG0601	transmembrane transport
TRQ7_08995	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ7_09000	COG0444	Belongs to the ABC transporter superfamily
TRQ7_09005	COG4608	Belongs to the ABC transporter superfamily
TRQ7_09015	COG3250	beta-galactosidase activity
TRQ7_09030	COG2359	stage V sporulation protein S
TRQ7_09040	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
TRQ7_09045	COG1324	tolerance protein
TRQ7_09050	COG1611	Belongs to the LOG family
TRQ7_09055	COG1137	ATPase activity
TRQ7_09065	COG1596	polysaccharide export
TRQ7_09065	COG1555	photosystem II stabilization
TRQ7_09080	COG1363	Peptidase, m42
TRQ7_09090	COG0850	regulation of cytokinetic process
TRQ7_09105	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
TRQ7_09110	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
TRQ7_09115	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
TRQ7_09120	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
TRQ7_09125	COG0131	Imidazoleglycerol-phosphate dehydratase
TRQ7_09130	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
TRQ7_09135	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
TRQ7_09140	COG0107	imidazoleglycerol-phosphate synthase activity
TRQ7_09145	COG0140	phosphoribosyl-ATP diphosphatase activity
TRQ7_09145	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
TRQ7_09150	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
TRQ7_09155	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
TRQ7_09155	COG0662	Cupin 2, conserved barrel domain protein
TRQ7_09175	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
TRQ7_09180	COG1131	(ABC) transporter
TRQ7_09210	COG2814	Major facilitator Superfamily
TRQ7_09235	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
TRQ7_09255	COG0656	L-ascorbic acid biosynthetic process
TRQ7_09260	COG1979	alcohol dehydrogenase
TRQ7_09280	COG0667	Aldo Keto reductase
TRQ7_09285	COG2207	Transcriptional regulator
TRQ7_09315	COG1895	HEPN domain
TRQ7_09320	COG0640	Transcriptional regulator
TRQ7_09375	COG3234	Protein of unknown function (DUF1175)
TRQ7_09395	COG2391	methyltransferase activity
TRQ7_09415	COG0425	Belongs to the sulfur carrier protein TusA family
TRQ7_09435	COG0840	transmembrane signaling receptor activity
TRQ7_09465	COG1606	tRNA processing
TRQ7_09470	COG1691	(AIR) carboxylase
TRQ7_09475	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
TRQ7_09485	COG1193	negative regulation of DNA recombination
TRQ7_09490	COG1193	negative regulation of DNA recombination
TRQ7_09500	COG1704	LemA family
TRQ7_09530	COG0174	glutamine synthetase
TRQ7_09565	COG0402	S-adenosylhomocysteine deaminase activity
TRQ7_09570	COG2239	Acts as a magnesium transporter
TRQ7_09575	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
TRQ7_09595	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TRQ7_09600	COG3864	Putative metallopeptidase domain
TRQ7_09610	COG1141	Ferredoxin