locus-tag class description Theam_0001 PF00425 chorismate binding enzyme Theam_0001 PF04715 Anthranilate synthase component I, N terminal region Theam_0002 PF03796 DnaB-like helicase C terminal domain Theam_0002 PF00772 DnaB-like helicase N terminal domain Theam_0004 PF04073 Aminoacyl-tRNA editing domain Theam_0004 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Theam_0004 PF03129 Anticodon binding domain Theam_0005 PF13439 Glycosyltransferase Family 4 Theam_0005 PF00534 Glycosyl transferases group 1 Theam_0006 PF08299 Bacterial dnaA protein helix-turn-helix Theam_0006 PF00308 Bacterial dnaA protein Theam_0006 PF11638 DnaA N-terminal domain Theam_0007 PF00712 DNA polymerase III beta subunit, N-terminal domain Theam_0007 PF02768 DNA polymerase III beta subunit, C-terminal domain Theam_0007 PF02767 DNA polymerase III beta subunit, central domain Theam_0008 PF01066 CDP-alcohol phosphatidyltransferase Theam_0009 PF02660 Glycerol-3-phosphate acyltransferase Theam_0010 PF00348 Polyprenyl synthetase Theam_0011 PF02780 Transketolase, C-terminal domain Theam_0011 PF02779 Transketolase, pyrimidine binding domain Theam_0011 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Theam_0038 PF00216 Bacterial DNA-binding protein Theam_0065 PF00873 AcrB/AcrD/AcrF family Theam_0068 PF01925 Sulfite exporter TauE/SafE Theam_0071 PF00484 Carbonic anhydrase Theam_0073 PF01048 Phosphorylase superfamily Theam_0075 PF00977 Histidine biosynthesis protein Theam_0076 PF01964 Radical SAM ThiC family Theam_0079 PF07687 Peptidase dimerisation domain Theam_0079 PF01546 Peptidase family M20/M25/M40 Theam_0080 PF00156 Phosphoribosyl transferase domain Theam_0081 PF00348 Polyprenyl synthetase Theam_0084 PF01370 NAD dependent epimerase/dehydratase family Theam_0085 PF02463 RecF/RecN/SMC N terminal domain Theam_0085 PF06470 SMC proteins Flexible Hinge Domain Theam_0087 PF12838 4Fe-4S dicluster domain Theam_0088 PF01765 Ribosome recycling factor Theam_0089 PF00696 Amino acid kinase family Theam_0090 PF00889 Elongation factor TS Theam_0091 PF00318 Ribosomal protein S2 Theam_0093 PF05378 Hydantoinase/oxoprolinase N-terminal region Theam_0093 PF01968 Hydantoinase/oxoprolinase Theam_0094 PF01209 ubiE/COQ5 methyltransferase family Theam_0096 PF01925 Sulfite exporter TauE/SafE Theam_0098 PF01261 Xylose isomerase-like TIM barrel Theam_0099 PF01738 Dienelactone hydrolase family Theam_0099 PF00156 Phosphoribosyl transferase domain Theam_0100 PF06133 Control of competence regulator ComK, YlbF/YmcA Theam_0104 PF00753 Metallo-beta-lactamase superfamily Theam_0104 PF01613 Flavin reductase like domain Theam_0106 PF00591 Glycosyl transferase family, a/b domain Theam_0106 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Theam_0106 PF02885 Glycosyl transferase family, helical bundle domain Theam_0107 PF02163 Peptidase family M50 Theam_0108 PF01871 AMMECR1 Theam_0109 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Theam_0111 PF02618 YceG-like family Theam_0113 PF00025 ADP-ribosylation factor family Theam_0119 PF16199 Radical_SAM C-terminal domain Theam_0119 PF04055 Radical SAM superfamily Theam_0120 PF02590 Predicted SPOUT methyltransferase Theam_0123 PF10150 Ribonuclease E/G family Theam_0123 PF00575 S1 RNA binding domain Theam_0127 PF10502 Signal peptidase, peptidase S26 Theam_0129 PF00216 Bacterial DNA-binding protein Theam_0131 PF02325 YGGT family Theam_0132 PF01725 Ham1 family Theam_0133 PF01138 3' exoribonuclease family, domain 1 Theam_0133 PF03725 3' exoribonuclease family, domain 2 Theam_0134 PF01177 Asp/Glu/Hydantoin racemase Theam_0135 PF13291 ACT domain Theam_0135 PF02824 TGS domain Theam_0135 PF04607 Region found in RelA / SpoT proteins Theam_0136 PF00574 Clp protease Theam_0137 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Theam_0137 PF00925 GTP cyclohydrolase II Theam_0139 PF00563 EAL domain Theam_0140 PF01488 Shikimate / quinate 5-dehydrogenase Theam_0140 PF08501 Shikimate dehydrogenase substrate binding domain Theam_0141 PF13194 Domain of unknown function (DUF4010) Theam_0142 PF01016 Ribosomal L27 protein Theam_0143 PF00829 Ribosomal prokaryotic L21 protein Theam_0145 PF00478 IMP dehydrogenase / GMP reductase domain Theam_0145 PF00571 CBS domain Theam_0146 PF00206 Lyase Theam_0146 PF14698 Argininosuccinate lyase C-terminal Theam_0147 PF00456 Transketolase, thiamine diphosphate binding domain Theam_0148 PF02779 Transketolase, pyrimidine binding domain Theam_0148 PF02780 Transketolase, C-terminal domain Theam_0149 PF03572 Peptidase family S41 Theam_0149 PF13180 PDZ domain Theam_0150 PF08241 Methyltransferase domain Theam_0150 PF12697 Alpha/beta hydrolase family Theam_0151 PF03668 P-loop ATPase protein family Theam_0153 PF01513 ATP-NAD kinase Theam_0155 PF04055 Radical SAM superfamily Theam_0157 PF00672 HAMP domain Theam_0157 PF02743 Cache domain Theam_0157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Theam_0158 PF05958 tRNA (Uracil-5-)-methyltransferase Theam_0159 PF01180 Dihydroorotate dehydrogenase Theam_0160 PF00270 DEAD/DEAH box helicase Theam_0160 PF17191 RecG wedge domain Theam_0160 PF00271 Helicase conserved C-terminal domain Theam_0163 PF02789 Cytosol aminopeptidase family, N-terminal domain Theam_0163 PF00883 Cytosol aminopeptidase family, catalytic domain Theam_0164 PF00654 Voltage gated chloride channel Theam_0165 PF02743 Cache domain Theam_0165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Theam_0165 PF00672 HAMP domain Theam_0166 PF00072 Response regulator receiver domain Theam_0166 PF00990 Diguanylate cyclase, GGDEF domain Theam_0168 PF00977 Histidine biosynthesis protein Theam_0170 PF02445 Quinolinate synthetase A protein Theam_0171 PF00958 GMP synthase C terminal domain Theam_0171 PF00117 Glutamine amidotransferase class-I Theam_0177 PF02481 DNA recombination-mediator protein A Theam_0177 PF17782 DprA winged helix domain Theam_0179 PF00709 Adenylosuccinate synthetase Theam_0180 PF13393 Histidyl-tRNA synthetase Theam_0181 PF00291 Pyridoxal-phosphate dependent enzyme Theam_0182 PF00701 Dihydrodipicolinate synthetase family Theam_0184 PF01113 Dihydrodipicolinate reductase, N-terminus Theam_0184 PF05173 Dihydrodipicolinate reductase, C-terminus Theam_0186 PF00141 Peroxidase Theam_0189 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Theam_0190 PF03447 Homoserine dehydrogenase, NAD binding domain Theam_0190 PF00742 Homoserine dehydrogenase Theam_0190 PF01842 ACT domain Theam_0191 PF00155 Aminotransferase class I and II Theam_0193 PF01032 FecCD transport family Theam_0194 PF00005 ABC transporter Theam_0195 PF07715 TonB-dependent Receptor Plug Domain Theam_0195 PF00593 TonB dependent receptor Theam_0196 PF04321 RmlD substrate binding domain Theam_0197 PF03328 HpcH/HpaI aldolase/citrate lyase family Theam_0198 PF03466 LysR substrate binding domain Theam_0198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Theam_0201 PF00330 Aconitase family (aconitate hydratase) Theam_0205 PF01467 Cytidylyltransferase-like Theam_0206 PF00162 Phosphoglycerate kinase Theam_0210 PF05257 CHAP domain Theam_0210 PF01476 LysM domain Theam_0211 PF01134 Glucose inhibited division protein A Theam_0212 PF01467 Cytidylyltransferase-like Theam_0212 PF00294 pfkB family carbohydrate kinase Theam_0213 PF01966 HD domain Theam_0214 PF01475 Ferric uptake regulator family Theam_0215 PF00551 Formyl transferase Theam_0215 PF02911 Formyl transferase, C-terminal domain Theam_0218 PF00731 AIR carboxylase Theam_0220 PF09285 Elongation factor P, C-terminal Theam_0220 PF08207 Elongation factor P (EF-P) KOW-like domain Theam_0220 PF01132 Elongation factor P (EF-P) OB domain Theam_0221 PF00364 Biotin-requiring enzyme Theam_0222 PF02785 Biotin carboxylase C-terminal domain Theam_0222 PF00289 Biotin carboxylase, N-terminal domain Theam_0222 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Theam_0223 PF17209 Hfq protein Theam_0226 PF13361 UvrD-like helicase C-terminal domain Theam_0226 PF00580 UvrD/REP helicase N-terminal domain Theam_0227 PF00266 Aminotransferase class-V Theam_0228 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Theam_0229 PF01613 Flavin reductase like domain Theam_0230 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Theam_0231 PF01784 NIF3 (NGG1p interacting factor 3) Theam_0233 PF05362 Lon protease (S16) C-terminal proteolytic domain Theam_0233 PF00004 ATPase family associated with various cellular activities (AAA) Theam_0233 PF02190 ATP-dependent protease La (LON) substrate-binding domain Theam_0234 PF00483 Nucleotidyl transferase Theam_0235 PF10672 S-adenosylmethionine-dependent methyltransferase Theam_0235 PF17785 PUA-like domain Theam_0237 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Theam_0237 PF00117 Glutamine amidotransferase class-I Theam_0239 PF00117 Glutamine amidotransferase class-I Theam_0240 PF02684 Lipid-A-disaccharide synthetase Theam_0241 PF02926 THUMP domain Theam_0241 PF01170 Putative RNA methylase family UPF0020 Theam_0243 PF09620 CRISPR-associated protein (Cas_csx3) Theam_0244 PF01207 Dihydrouridine synthase (Dus) Theam_0245 PF00312 Ribosomal protein S15 Theam_0246 PF00013 KH domain Theam_0246 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Theam_0246 PF01138 3' exoribonuclease family, domain 1 Theam_0246 PF03725 3' exoribonuclease family, domain 2 Theam_0246 PF00575 S1 RNA binding domain Theam_0247 PF00692 dUTPase Theam_0250 PF00682 HMGL-like Theam_0250 PF08502 LeuA allosteric (dimerisation) domain Theam_0252 PF00164 Ribosomal protein S12/S23 Theam_0253 PF00177 Ribosomal protein S7p/S5e Theam_0254 PF03144 Elongation factor Tu domain 2 Theam_0254 PF03764 Elongation factor G, domain IV Theam_0254 PF00679 Elongation factor G C-terminus Theam_0254 PF14492 Elongation Factor G, domain II Theam_0254 PF00009 Elongation factor Tu GTP binding domain Theam_0255 PF00009 Elongation factor Tu GTP binding domain Theam_0255 PF03144 Elongation factor Tu domain 2 Theam_0255 PF03143 Elongation factor Tu C-terminal domain Theam_0256 PF00338 Ribosomal protein S10p/S20e Theam_0257 PF00297 Ribosomal protein L3 Theam_0258 PF00573 Ribosomal protein L4/L1 family Theam_0259 PF00276 Ribosomal protein L23 Theam_0260 PF03947 Ribosomal Proteins L2, C-terminal domain Theam_0260 PF00181 Ribosomal Proteins L2, RNA binding domain Theam_0261 PF00203 Ribosomal protein S19 Theam_0262 PF00237 Ribosomal protein L22p/L17e Theam_0263 PF00189 Ribosomal protein S3, C-terminal domain Theam_0263 PF07650 KH domain Theam_0264 PF00252 Ribosomal protein L16p/L10e Theam_0265 PF00831 Ribosomal L29 protein Theam_0266 PF00366 Ribosomal protein S17 Theam_0267 PF00238 Ribosomal protein L14p/L23e Theam_0268 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Theam_0268 PF00467 KOW motif Theam_0269 PF00673 ribosomal L5P family C-terminus Theam_0269 PF00281 Ribosomal protein L5 Theam_0271 PF00410 Ribosomal protein S8 Theam_0272 PF00347 Ribosomal protein L6 Theam_0273 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Theam_0274 PF00333 Ribosomal protein S5, N-terminal domain Theam_0274 PF03719 Ribosomal protein S5, C-terminal domain Theam_0275 PF00327 Ribosomal protein L30p/L7e Theam_0276 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Theam_0277 PF00344 SecY translocase Theam_0278 PF05191 Adenylate kinase, active site lid Theam_0279 PF00557 Metallopeptidase family M24 Theam_0280 PF01176 Translation initiation factor 1A / IF-1 Theam_0281 PF00444 Ribosomal protein L36 Theam_0282 PF00416 Ribosomal protein S13/S18 Theam_0283 PF00411 Ribosomal protein S11 Theam_0284 PF00163 Ribosomal protein S4/S9 N-terminal domain Theam_0284 PF01479 S4 domain Theam_0285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Theam_0285 PF01000 RNA polymerase Rpb3/RpoA insert domain Theam_0285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Theam_0286 PF01196 Ribosomal protein L17 Theam_0287 PF03776 Septum formation topological specificity factor MinE Theam_0288 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Theam_0289 PF03775 Septum formation inhibitor MinC, C-terminal domain Theam_0290 PF00491 Arginase family Theam_0291 PF17284 Spermidine synthase tetramerisation domain Theam_0292 PF01861 Branched-chain polyamine synthase A C-terminal domain Theam_0295 PF01048 Phosphorylase superfamily Theam_0296 PF14489 QueF-like protein Theam_0297 PF14693 Ribosomal protein TL5, C-terminal domain Theam_0297 PF01386 Ribosomal L25p family Theam_0298 PF01195 Peptidyl-tRNA hydrolase Theam_0299 PF01250 Ribosomal protein S6 Theam_0300 PF00436 Single-strand binding protein family Theam_0301 PF01084 Ribosomal protein S18 Theam_0303 PF01281 Ribosomal protein L9, N-terminal domain Theam_0303 PF03948 Ribosomal protein L9, C-terminal domain Theam_0305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Theam_0306 PF01042 Endoribonuclease L-PSP Theam_0307 PF01022 Bacterial regulatory protein, arsR family Theam_0308 PF01039 Carboxyl transferase domain Theam_0308 PF17848 Acetyl-coA carboxylase zinc finger domain Theam_0310 PF02559 CarD-like/TRCF domain Theam_0310 PF00270 DEAD/DEAH box helicase Theam_0310 PF00271 Helicase conserved C-terminal domain Theam_0310 PF03461 TRCF domain Theam_0310 PF17757 UvrB interaction domain Theam_0314 PF12849 PBP superfamily domain Theam_0315 PF17760 UvrA interaction domain Theam_0315 PF17755 UvrA DNA-binding domain Theam_0315 PF00005 ABC transporter Theam_0317 PF09719 Putative redox-active protein (C_GCAxxG_C_C) Theam_0319 PF12801 4Fe-4S binding domain Theam_0323 PF01738 Dienelactone hydrolase family Theam_0323 PF00156 Phosphoribosyl transferase domain Theam_0324 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Theam_0325 PF00486 Transcriptional regulatory protein, C terminal Theam_0325 PF00072 Response regulator receiver domain Theam_0327 PF04898 Glutamate synthase central domain Theam_0327 PF01493 GXGXG motif Theam_0327 PF00310 Glutamine amidotransferases class-II Theam_0327 PF01645 Conserved region in glutamate synthase Theam_0328 PF02142 MGS-like domain Theam_0328 PF01808 AICARFT/IMPCHase bienzyme Theam_0329 PF16200 C-terminal region of band_7 Theam_0329 PF01145 SPFH domain / Band 7 family Theam_0331 PF01168 Alanine racemase, N-terminal domain Theam_0331 PF00842 Alanine racemase, C-terminal domain Theam_0333 PF02811 PHP domain Theam_0336 PF00227 Proteasome subunit Theam_0337 PF00004 ATPase family associated with various cellular activities (AAA) Theam_0337 PF07724 AAA domain (Cdc48 subfamily) Theam_0337 PF10431 C-terminal, D2-small domain, of ClpB protein Theam_0338 PF01321 Creatinase/Prolidase N-terminal domain Theam_0338 PF00557 Metallopeptidase family M24 Theam_0341 PF03787 RAMP superfamily Theam_0345 PF01702 Queuine tRNA-ribosyltransferase Theam_0347 PF00694 Aconitase C-terminal domain Theam_0348 PF00180 Isocitrate/isopropylmalate dehydrogenase Theam_0349 PF02774 Semialdehyde dehydrogenase, dimerisation domain Theam_0349 PF01118 Semialdehyde dehydrogenase, NAD binding domain Theam_0351 PF12706 Beta-lactamase superfamily domain Theam_0353 PF00708 Acylphosphatase Theam_0354 PF01476 LysM domain Theam_0354 PF00877 NlpC/P60 family Theam_0355 PF02386 Cation transport protein Theam_0356 PF02254 TrkA-N domain Theam_0356 PF02080 TrkA-C domain Theam_0357 PF01578 Cytochrome C assembly protein Theam_0358 PF05140 ResB-like family Theam_0359 PF01979 Amidohydrolase family Theam_0360 PF12627 Probable RNA and SrmB- binding site of polymerase A Theam_0360 PF01966 HD domain Theam_0360 PF01743 Poly A polymerase head domain Theam_0361 PF00005 ABC transporter Theam_0362 PF00004 ATPase family associated with various cellular activities (AAA) Theam_0362 PF07724 AAA domain (Cdc48 subfamily) Theam_0362 PF17871 AAA lid domain Theam_0362 PF02861 Clp amino terminal domain, pathogenicity island component Theam_0362 PF10431 C-terminal, D2-small domain, of ClpB protein Theam_0363 PF04452 RNA methyltransferase Theam_0365 PF16193 AAA C-terminal domain Theam_0365 PF01661 Macro domain Theam_0365 PF12002 MgsA AAA+ ATPase C terminal Theam_0365 PF05496 Holliday junction DNA helicase RuvB P-loop domain Theam_0366 PF16591 Helical bimodular sensor domain Theam_0366 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Theam_0366 PF00672 HAMP domain Theam_0369 PF01479 S4 domain Theam_0369 PF00849 RNA pseudouridylate synthase Theam_0371 PF05188 MutS domain II Theam_0371 PF05192 MutS domain III Theam_0371 PF05190 MutS family domain IV Theam_0371 PF01624 MutS domain I Theam_0371 PF00488 MutS domain V Theam_0373 PF08502 LeuA allosteric (dimerisation) domain Theam_0373 PF00682 HMGL-like Theam_0374 PF13840 ACT domain Theam_0374 PF00696 Amino acid kinase family Theam_0374 PF01842 ACT domain Theam_0375 PF00994 Probable molybdopterin binding domain Theam_0375 PF03454 MoeA C-terminal region (domain IV) Theam_0375 PF03453 MoeA N-terminal region (domain I and II) Theam_0377 PF01118 Semialdehyde dehydrogenase, NAD binding domain Theam_0377 PF02774 Semialdehyde dehydrogenase, dimerisation domain Theam_0378 PF00380 Ribosomal protein S9/S16 Theam_0379 PF00572 Ribosomal protein L13 Theam_0381 PF01628 HrcA protein C terminal domain Theam_0382 PF00132 Bacterial transferase hexapeptide (six repeats) Theam_0385 PF00834 Ribulose-phosphate 3 epimerase family Theam_0386 PF14572 Phosphoribosyl synthetase-associated domain Theam_0386 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Theam_0389 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Theam_0390 PF01648 4'-phosphopantetheinyl transferase superfamily Theam_0392 PF00550 Phosphopantetheine attachment site Theam_0396 PF00563 EAL domain Theam_0396 PF00990 Diguanylate cyclase, GGDEF domain Theam_0396 PF03707 Bacterial signalling protein N terminal repeat Theam_0399 PF01751 Toprim domain Theam_0399 PF01396 Topoisomerase DNA binding C4 zinc finger Theam_0399 PF01131 DNA topoisomerase Theam_0400 PF05552 Conserved TM helix Theam_0406 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Theam_0407 PF00301 Rubredoxin Theam_0410 PF00196 Bacterial regulatory proteins, luxR family Theam_0410 PF00072 Response regulator receiver domain Theam_0411 PF12169 DNA polymerase III subunits gamma and tau domain III Theam_0412 PF02223 Thymidylate kinase Theam_0413 PF00999 Sodium/hydrogen exchanger family Theam_0416 PF04055 Radical SAM superfamily Theam_0417 PF04468 PSP1 C-terminal conserved region Theam_0423 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Theam_0423 PF01568 Molydopterin dinucleotide binding domain Theam_0423 PF00384 Molybdopterin oxidoreductase Theam_0426 PF12801 4Fe-4S binding domain Theam_0428 PF03309 Type III pantothenate kinase Theam_0429 PF01960 ArgJ family Theam_0431 PF00291 Pyridoxal-phosphate dependent enzyme Theam_0433 PF02511 Thymidylate synthase complementing protein Theam_0434 PF01197 Ribosomal protein L31 Theam_0435 PF09335 SNARE associated Golgi protein Theam_0436 PF00290 Tryptophan synthase alpha chain Theam_0437 PF02416 mttA/Hcf106 family Theam_0438 PF00902 Sec-independent protein translocase protein (TatC) Theam_0439 PF07498 Rho termination factor, N-terminal domain Theam_0439 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Theam_0439 PF07497 Rho termination factor, RNA-binding domain Theam_0440 PF13580 SIS domain Theam_0441 PF01791 DeoC/LacD family aldolase Theam_0443 PF02254 TrkA-N domain Theam_0443 PF02080 TrkA-C domain Theam_0443 PF00999 Sodium/hydrogen exchanger family Theam_0444 PF02080 TrkA-C domain Theam_0444 PF02254 TrkA-N domain Theam_0445 PF00005 ABC transporter Theam_0446 PF01458 Uncharacterized protein family (UPF0051) Theam_0448 PF00677 Lumazine binding domain Theam_0449 PF02541 Ppx/GppA phosphatase family Theam_0450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Theam_0450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Theam_0450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Theam_0452 PF01872 RibD C-terminal domain Theam_0453 PF00528 Binding-protein-dependent transport system inner membrane component Theam_0454 PF12911 N-terminal TM domain of oligopeptide transport permease C Theam_0454 PF00528 Binding-protein-dependent transport system inner membrane component Theam_0455 PF00953 Glycosyl transferase family 4 Theam_0455 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Theam_0457 PF06426 Serine acetyltransferase, N-terminal Theam_0457 PF00132 Bacterial transferase hexapeptide (six repeats) Theam_0459 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Theam_0459 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Theam_0460 PF10369 Small subunit of acetolactate synthase Theam_0460 PF01842 ACT domain Theam_0461 PF00205 Thiamine pyrophosphate enzyme, central domain Theam_0461 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Theam_0461 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Theam_0462 PF00425 chorismate binding enzyme Theam_0462 PF04715 Anthranilate synthase component I, N terminal region Theam_0464 PF00571 CBS domain Theam_0464 PF01380 SIS domain Theam_0466 PF04552 Sigma-54, DNA binding domain Theam_0466 PF04963 Sigma-54 factor, core binding domain Theam_0466 PF00309 Sigma-54 factor, Activator interacting domain (AID) Theam_0467 PF08335 GlnD PII-uridylyltransferase Theam_0467 PF03710 Glutamate-ammonia ligase adenylyltransferase Theam_0470 PF00468 Ribosomal protein L34 Theam_0471 PF00825 Ribonuclease P Theam_0472 PF01809 Putative membrane protein insertion efficiency factor Theam_0473 PF02096 60Kd inner membrane protein Theam_0474 PF03471 Transporter associated domain Theam_0474 PF01595 Cyclin M transmembrane N-terminal domain Theam_0474 PF00571 CBS domain Theam_0475 PF03471 Transporter associated domain Theam_0475 PF00571 CBS domain Theam_0475 PF01595 Cyclin M transmembrane N-terminal domain Theam_0476 PF12838 4Fe-4S dicluster domain Theam_0478 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Theam_0480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Theam_0481 PF00146 NADH dehydrogenase Theam_0482 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Theam_0482 PF00361 Proton-conducting membrane transporter Theam_0482 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Theam_0482 PF13244 Domain of unknown function (DUF4040) Theam_0484 PF00374 Nickel-dependent hydrogenase Theam_0485 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Theam_0485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Theam_0486 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Theam_0488 PF01467 Cytidylyltransferase-like Theam_0489 PF00171 Aldehyde dehydrogenase family Theam_0491 PF00152 tRNA synthetases class II (D, K and N) Theam_0492 PF02441 Flavoprotein Theam_0493 PF00696 Amino acid kinase family Theam_0494 PF01654 Cytochrome bd terminal oxidase subunit I Theam_0495 PF02322 Cytochrome bd terminal oxidase subunit II Theam_0500 PF17209 Hfq protein Theam_0502 PF00749 tRNA synthetases class I (E and Q), catalytic domain Theam_0503 PF01312 FlhB HrpN YscU SpaS Family Theam_0506 PF03900 Porphobilinogen deaminase, C-terminal domain Theam_0506 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Theam_0507 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Theam_0507 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Theam_0507 PF01488 Shikimate / quinate 5-dehydrogenase Theam_0508 PF01578 Cytochrome C assembly protein Theam_0509 PF01487 Type I 3-dehydroquinase Theam_0510 PF02641 Uncharacterized ACR, COG1993 Theam_0511 PF00437 Type II/IV secretion system protein Theam_0511 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Theam_0513 PF01520 N-acetylmuramoyl-L-alanine amidase Theam_0513 PF11741 AMIN domain Theam_0514 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Theam_0519 PF10431 C-terminal, D2-small domain, of ClpB protein Theam_0519 PF00004 ATPase family associated with various cellular activities (AAA) Theam_0519 PF07724 AAA domain (Cdc48 subfamily) Theam_0520 PF00490 Delta-aminolevulinic acid dehydratase Theam_0522 PF00753 Metallo-beta-lactamase superfamily Theam_0522 PF01613 Flavin reductase like domain Theam_0523 PF01165 Ribosomal protein S21 Theam_0524 PF09424 Yqey-like protein Theam_0525 PF00488 MutS domain V Theam_0525 PF01713 Smr domain Theam_0526 PF00202 Aminotransferase class-III Theam_0529 PF13520 Amino acid permease Theam_0530 PF02558 Ketopantoate reductase PanE/ApbA Theam_0530 PF08546 Ketopantoate reductase PanE/ApbA C terminal Theam_0534 PF00920 Dehydratase family Theam_0536 PF00583 Acetyltransferase (GNAT) family Theam_0537 PF00814 Glycoprotease family Theam_0538 PF06750 Bacterial Peptidase A24 N-terminal domain Theam_0538 PF01478 Type IV leader peptidase family Theam_0540 PF08148 DSHCT (NUC185) domain Theam_0540 PF00271 Helicase conserved C-terminal domain Theam_0540 PF00270 DEAD/DEAH box helicase Theam_0543 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Theam_0545 PF00005 ABC transporter Theam_0545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Theam_0548 PF00501 AMP-binding enzyme Theam_0548 PF13193 AMP-binding enzyme C-terminal domain Theam_0548 PF16177 Acetyl-coenzyme A synthetase N-terminus Theam_0549 PF12344 Ultra-violet resistance protein B Theam_0549 PF02151 UvrB/uvrC motif Theam_0549 PF04851 Type III restriction enzyme, res subunit Theam_0549 PF00271 Helicase conserved C-terminal domain Theam_0549 PF17757 UvrB interaction domain Theam_0550 PF07282 Putative transposase DNA-binding domain Theam_0557 PF02080 TrkA-C domain Theam_0557 PF02254 TrkA-N domain Theam_0558 PF00155 Aminotransferase class I and II Theam_0559 PF00919 Uncharacterized protein family UPF0004 Theam_0559 PF04055 Radical SAM superfamily Theam_0561 PF02374 Anion-transporting ATPase Theam_0564 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Theam_0565 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Theam_0568 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Theam_0568 PF12557 Cob(I)alamin adenosyltransferase N terminal Theam_0569 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Theam_0569 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Theam_0569 PF13288 DXP reductoisomerase C-terminal domain Theam_0570 PF13393 Histidyl-tRNA synthetase Theam_0570 PF03129 Anticodon binding domain Theam_0573 PF00990 Diguanylate cyclase, GGDEF domain Theam_0573 PF00563 EAL domain Theam_0573 PF10442 FIST C domain Theam_0573 PF08495 FIST N domain Theam_0575 PF00535 Glycosyl transferase family 2 Theam_0576 PF08468 Methyltransferase small domain N-terminal Theam_0576 PF05175 Methyltransferase small domain Theam_0577 PF00483 Nucleotidyl transferase Theam_0578 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Theam_0579 PF16363 GDP-mannose 4,6 dehydratase Theam_0580 PF04321 RmlD substrate binding domain Theam_0581 PF00850 Histone deacetylase domain Theam_0582 PF08206 Ribonuclease B OB domain Theam_0582 PF00575 S1 RNA binding domain Theam_0582 PF17876 Cold shock domain Theam_0582 PF00773 RNB domain Theam_0586 PF00113 Enolase, C-terminal TIM barrel domain Theam_0586 PF03952 Enolase, N-terminal domain Theam_0587 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Theam_0588 PF02472 Biopolymer transport protein ExbD/TolR Theam_0589 PF00155 Aminotransferase class I and II Theam_0591 PF00578 AhpC/TSA family Theam_0592 PF01649 Ribosomal protein S20 Theam_0593 PF02581 Thiamine monophosphate synthase Theam_0595 PF13439 Glycosyltransferase Family 4 Theam_0595 PF00534 Glycosyl transferases group 1 Theam_0597 PF01522 Polysaccharide deacetylase Theam_0598 PF00005 ABC transporter Theam_0598 PF00664 ABC transporter transmembrane region Theam_0600 PF00534 Glycosyl transferases group 1 Theam_0600 PF13439 Glycosyltransferase Family 4 Theam_0601 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Theam_0601 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Theam_0601 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Theam_0602 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Theam_0602 PF00056 lactate/malate dehydrogenase, NAD binding domain Theam_0603 PF05681 Fumarate hydratase (Fumerase) Theam_0604 PF01209 ubiE/COQ5 methyltransferase family Theam_0605 PF04551 GcpE protein Theam_0607 PF00990 Diguanylate cyclase, GGDEF domain Theam_0608 PF02677 Epoxyqueuosine reductase QueH Theam_0609 PF02310 B12 binding domain Theam_0609 PF02965 Vitamin B12 dependent methionine synthase, activation domain Theam_0609 PF00809 Pterin binding enzyme Theam_0609 PF02607 B12 binding domain Theam_0609 PF02574 Homocysteine S-methyltransferase Theam_0610 PF00156 Phosphoribosyl transferase domain Theam_0611 PF00109 Beta-ketoacyl synthase, N-terminal domain Theam_0611 PF02801 Beta-ketoacyl synthase, C-terminal domain Theam_0612 PF00035 Double-stranded RNA binding motif Theam_0612 PF14622 Ribonuclease-III-like Theam_0613 PF02545 Maf-like protein Theam_0615 PF00072 Response regulator receiver domain Theam_0615 PF08769 Sporulation initiation factor Spo0A C terminal Theam_0616 PF02542 YgbB family Theam_0617 PF07977 FabA-like domain Theam_0618 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Theam_0618 PF00132 Bacterial transferase hexapeptide (six repeats) Theam_0619 PF12706 Beta-lactamase superfamily domain Theam_0620 PF03266 NTPase Theam_0621 PF01430 Hsp33 protein Theam_0626 PF00909 Ammonium Transporter Family Theam_0628 PF00543 Nitrogen regulatory protein P-II Theam_0629 PF03951 Glutamine synthetase, beta-Grasp domain Theam_0629 PF00120 Glutamine synthetase, catalytic domain Theam_0631 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Theam_0631 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Theam_0633 PF02153 Prephenate dehydrogenase Theam_0633 PF01842 ACT domain Theam_0638 PF02621 Menaquinone biosynthesis Theam_0639 PF01171 PP-loop family Theam_0640 PF01467 Cytidylyltransferase-like Theam_0640 PF00294 pfkB family carbohydrate kinase Theam_0641 PF04002 RadC-like JAB domain Theam_0642 PF08264 Anticodon-binding domain of tRNA Theam_0642 PF00133 tRNA synthetases class I (I, L, M and V) Theam_0642 PF06827 Zinc finger found in FPG and IleRS Theam_0645 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Theam_0645 PF01676 Metalloenzyme superfamily Theam_0646 PF01416 tRNA pseudouridine synthase Theam_0647 PF02254 TrkA-N domain Theam_0647 PF02080 TrkA-C domain Theam_0647 PF00999 Sodium/hydrogen exchanger family Theam_0648 PF04107 Glutamate-cysteine ligase family 2(GCS2) Theam_0651 PF01966 HD domain Theam_0651 PF01909 Nucleotidyltransferase domain Theam_0651 PF08335 GlnD PII-uridylyltransferase Theam_0652 PF13091 PLD-like domain Theam_0654 PF16363 GDP-mannose 4,6 dehydratase Theam_0655 PF00121 Triosephosphate isomerase Theam_0656 PF07724 AAA domain (Cdc48 subfamily) Theam_0656 PF06689 ClpX C4-type zinc finger Theam_0656 PF10431 C-terminal, D2-small domain, of ClpB protein Theam_0657 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Theam_0661 PF00152 tRNA synthetases class II (D, K and N) Theam_0661 PF02938 GAD domain Theam_0661 PF01336 OB-fold nucleic acid binding domain Theam_0663 PF00459 Inositol monophosphatase family Theam_0664 PF02080 TrkA-C domain Theam_0664 PF03600 Citrate transporter Theam_0666 PF14306 PUA-like domain Theam_0666 PF01747 ATP-sulfurylase Theam_0669 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Theam_0669 PF00535 Glycosyl transferase family 2 Theam_0671 PF13439 Glycosyltransferase Family 4 Theam_0671 PF00534 Glycosyl transferases group 1 Theam_0674 PF00534 Glycosyl transferases group 1 Theam_0674 PF13439 Glycosyltransferase Family 4 Theam_0675 PF02397 Bacterial sugar transferase Theam_0676 PF02675 S-adenosylmethionine decarboxylase Theam_0677 PF01258 Prokaryotic dksA/traR C4-type zinc finger Theam_0681 PF00440 Bacterial regulatory proteins, tetR family Theam_0681 PF08359 YsiA-like protein, C-terminal region Theam_0682 PF01869 BadF/BadG/BcrA/BcrD ATPase family Theam_0683 PF00563 EAL domain Theam_0684 PF13722 5TM C-terminal transporter carbon starvation CstA Theam_0684 PF02554 Carbon starvation protein CstA Theam_0686 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Theam_0686 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Theam_0688 PF01895 PhoU domain Theam_0689 PF00950 ABC 3 transport family Theam_0691 PF03358 NADPH-dependent FMN reductase Theam_0692 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Theam_0692 PF01926 50S ribosome-binding GTPase Theam_0696 PF01920 Prefoldin subunit Theam_0697 PF02996 Prefoldin subunit Theam_0699 PF03673 Uncharacterised protein family (UPF0128) Theam_0704 PF00155 Aminotransferase class I and II Theam_0707 PF00156 Phosphoribosyl transferase domain Theam_0708 PF00005 ABC transporter Theam_0708 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Theam_0709 PF02548 Ketopantoate hydroxymethyltransferase Theam_0710 PF03193 RsgA GTPase Theam_0713 PF03330 Lytic transglycolase Theam_0713 PF05036 Sporulation related domain Theam_0714 PF00890 FAD binding domain Theam_0714 PF02910 Fumarate reductase flavoprotein C-term Theam_0715 PF07687 Peptidase dimerisation domain Theam_0715 PF01546 Peptidase family M20/M25/M40 Theam_0717 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Theam_0717 PF01565 FAD binding domain Theam_0718 PF00117 Glutamine amidotransferase class-I Theam_0718 PF06418 CTP synthase N-terminus Theam_0719 PF02348 Cytidylyltransferase Theam_0721 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Theam_0723 PF01252 Signal peptidase (SPase) II Theam_0724 PF08275 DNA primase catalytic core, N-terminal domain Theam_0724 PF10410 DnaB-helicase binding domain of primase Theam_0724 PF01807 CHC2 zinc finger Theam_0725 PF04545 Sigma-70, region 4 Theam_0725 PF03979 Sigma-70 factor, region 1.1 Theam_0725 PF04546 Sigma-70, non-essential region Theam_0725 PF00140 Sigma-70 factor, region 1.2 Theam_0725 PF04539 Sigma-70 region 3 Theam_0725 PF04542 Sigma-70 region 2 Theam_0726 PF00849 RNA pseudouridylate synthase Theam_0727 PF00578 AhpC/TSA family Theam_0727 PF10417 C-terminal domain of 1-Cys peroxiredoxin Theam_0728 PF01522 Polysaccharide deacetylase Theam_0729 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Theam_0729 PF01476 LysM domain Theam_0730 PF05681 Fumarate hydratase (Fumerase) Theam_0730 PF05683 Fumarase C-terminus Theam_0731 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Theam_0732 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Theam_0733 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Theam_0734 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Theam_0736 PF10531 SLBB domain Theam_0736 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Theam_0736 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Theam_0737 PF00384 Molybdopterin oxidoreductase Theam_0737 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Theam_0737 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Theam_0737 PF01568 Molydopterin dinucleotide binding domain Theam_0737 PF12838 4Fe-4S dicluster domain Theam_0738 PF13545 Crp-like helix-turn-helix domain Theam_0738 PF00027 Cyclic nucleotide-binding domain Theam_0739 PF00146 NADH dehydrogenase Theam_0740 PF12838 4Fe-4S dicluster domain Theam_0741 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Theam_0742 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Theam_0743 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Theam_0743 PF00361 Proton-conducting membrane transporter Theam_0744 PF00361 Proton-conducting membrane transporter Theam_0744 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Theam_0745 PF00361 Proton-conducting membrane transporter Theam_0746 PF12390 Selenocysteine synthase N terminal Theam_0746 PF03841 L-seryl-tRNA selenium transferase Theam_0747 PF00593 TonB dependent receptor Theam_0747 PF07715 TonB-dependent Receptor Plug Domain Theam_0749 PF17158 Membrane-associated sensor, integral membrane domain Theam_0749 PF00990 Diguanylate cyclase, GGDEF domain Theam_0751 PF01476 LysM domain Theam_0753 PF00873 AcrB/AcrD/AcrF family Theam_0754 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Theam_0755 PF00117 Glutamine amidotransferase class-I Theam_0756 PF01523 Putative modulator of DNA gyrase Theam_0757 PF02540 NAD synthase Theam_0761 PF01219 Prokaryotic diacylglycerol kinase Theam_0762 PF07698 7TM receptor with intracellular HD hydrolase Theam_0762 PF07697 7TM-HD extracellular Theam_0762 PF01966 HD domain Theam_0763 PF02562 PhoH-like protein Theam_0764 PF12794 Mechanosensitive ion channel inner membrane domain 1 Theam_0764 PF12795 Mechanosensitive ion channel porin domain Theam_0764 PF00924 Mechanosensitive ion channel Theam_0765 PF12848 ABC transporter Theam_0765 PF00005 ABC transporter Theam_0767 PF00209 Sodium:neurotransmitter symporter family Theam_0768 PF01018 GTP1/OBG Theam_0768 PF01926 50S ribosome-binding GTPase Theam_0768 PF04055 Radical SAM superfamily Theam_0769 PF01103 Surface antigen Theam_0769 PF07244 Surface antigen variable number repeat Theam_0770 PF02272 DHHA1 domain Theam_0770 PF01368 DHH family Theam_0772 PF01523 Putative modulator of DNA gyrase Theam_0773 PF02511 Thymidylate synthase complementing protein Theam_0785 PF03454 MoeA C-terminal region (domain IV) Theam_0785 PF03453 MoeA N-terminal region (domain I and II) Theam_0785 PF00994 Probable molybdopterin binding domain Theam_0786 PF00994 Probable molybdopterin binding domain Theam_0786 PF02464 Competence-damaged protein Theam_0787 PF12857 TOBE-like domain Theam_0787 PF00005 ABC transporter Theam_0788 PF00528 Binding-protein-dependent transport system inner membrane component Theam_0790 PF01050 Mannose-6-phosphate isomerase Theam_0790 PF00483 Nucleotidyl transferase Theam_0797 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Theam_0797 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Theam_0797 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Theam_0800 PF01367 5'-3' exonuclease, C-terminal SAM fold Theam_0800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Theam_0800 PF00476 DNA polymerase family A Theam_0801 PF01225 Mur ligase family, catalytic domain Theam_0801 PF02875 Mur ligase family, glutamate ligase domain Theam_0801 PF08245 Mur ligase middle domain Theam_0802 PF01370 NAD dependent epimerase/dehydratase family Theam_0807 PF13439 Glycosyltransferase Family 4 Theam_0807 PF00534 Glycosyl transferases group 1 Theam_0812 PF13086 AAA domain Theam_0812 PF13087 AAA domain Theam_0812 PF13195 Protein of unknown function (DUF4011) Theam_0813 PF01557 Fumarylacetoacetate (FAA) hydrolase family Theam_0815 PF00334 Nucleoside diphosphate kinase Theam_0816 PF04493 Endonuclease V Theam_0819 PF02355 Protein export membrane protein Theam_0819 PF07549 SecD/SecF GG Motif Theam_0820 PF07549 SecD/SecF GG Motif Theam_0820 PF02355 Protein export membrane protein Theam_0822 PF03099 Biotin/lipoate A/B protein ligase family Theam_0822 PF08279 HTH domain Theam_0822 PF02237 Biotin protein ligase C terminal domain Theam_0823 PF05175 Methyltransferase small domain Theam_0823 PF17827 PrmC N-terminal domain Theam_0824 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Theam_0825 PF01634 ATP phosphoribosyltransferase Theam_0826 PF01842 ACT domain Theam_0826 PF00551 Formyl transferase Theam_0827 PF01380 SIS domain Theam_0828 PF12631 MnmE helical domain Theam_0828 PF01926 50S ribosome-binding GTPase Theam_0828 PF10396 GTP-binding protein TrmE N-terminus Theam_0829 PF01464 Transglycosylase SLT domain Theam_0829 PF10145 Phage-related minor tail protein Theam_0829 PF01551 Peptidase family M23 Theam_0831 PF03744 6-carboxyhexanoate--CoA ligase Theam_0832 PF12795 Mechanosensitive ion channel porin domain Theam_0832 PF00924 Mechanosensitive ion channel Theam_0832 PF12794 Mechanosensitive ion channel inner membrane domain 1 Theam_0833 PF02580 D-Tyr-tRNA(Tyr) deacylase Theam_0834 PF01914 MarC family integral membrane protein Theam_0835 PF01040 UbiA prenyltransferase family Theam_0837 PF00375 Sodium:dicarboxylate symporter family Theam_0838 PF01926 50S ribosome-binding GTPase Theam_0838 PF06071 Protein of unknown function (DUF933) Theam_0840 PF00580 UvrD/REP helicase N-terminal domain Theam_0840 PF13361 UvrD-like helicase C-terminal domain Theam_0840 PF12705 PD-(D/E)XK nuclease superfamily Theam_0842 PF01063 Amino-transferase class IV Theam_0843 PF00072 Response regulator receiver domain Theam_0844 PF00072 Response regulator receiver domain Theam_0844 PF01584 CheW-like domain Theam_0845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Theam_0845 PF02743 Cache domain Theam_0845 PF00672 HAMP domain Theam_0846 PF01584 CheW-like domain Theam_0847 PF07194 P2 response regulator binding domain Theam_0847 PF01627 Hpt domain Theam_0847 PF01584 CheW-like domain Theam_0847 PF02895 Signal transducing histidine kinase, homodimeric domain Theam_0847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_0849 PF12327 FtsZ family, C-terminal domain Theam_0849 PF00091 Tubulin/FtsZ family, GTPase domain Theam_0850 PF02491 SHS2 domain inserted in FTSA Theam_0852 PF07478 D-ala D-ala ligase C-terminus Theam_0852 PF01820 D-ala D-ala ligase N-terminus Theam_0853 PF08245 Mur ligase middle domain Theam_0853 PF02875 Mur ligase family, glutamate ligase domain Theam_0853 PF01225 Mur ligase family, catalytic domain Theam_0854 PF02875 Mur ligase family, glutamate ligase domain Theam_0854 PF01225 Mur ligase family, catalytic domain Theam_0854 PF08245 Mur ligase middle domain Theam_0857 PF06463 Molybdenum Cofactor Synthesis C Theam_0857 PF04055 Radical SAM superfamily Theam_0858 PF00440 Bacterial regulatory proteins, tetR family Theam_0858 PF08359 YsiA-like protein, C-terminal region Theam_0859 PF00440 Bacterial regulatory proteins, tetR family Theam_0859 PF18665 Tetracyclin repressor-like, C-terminal domain Theam_0860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Theam_0860 PF00529 HlyD membrane-fusion protein of T1SS Theam_0861 PF07690 Major Facilitator Superfamily Theam_0863 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Theam_0864 PF00005 ABC transporter Theam_0868 PF03787 RAMP superfamily Theam_0870 PF03787 RAMP superfamily Theam_0872 PF18211 Csm1 subunit domain B Theam_0873 PF01653 NAD-dependent DNA ligase adenylation domain Theam_0873 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Theam_0873 PF12826 Helix-hairpin-helix motif Theam_0873 PF00533 BRCA1 C Terminus (BRCT) domain Theam_0873 PF03120 NAD-dependent DNA ligase OB-fold domain Theam_0876 PF01967 MoaC family Theam_0876 PF00994 Probable molybdopterin binding domain Theam_0877 PF12804 MobA-like NTP transferase domain Theam_0879 PF01641 SelR domain Theam_0881 PF00005 ABC transporter Theam_0881 PF12704 MacB-like periplasmic core domain Theam_0881 PF02687 FtsX-like permease family Theam_0882 PF02687 FtsX-like permease family Theam_0882 PF12704 MacB-like periplasmic core domain Theam_0882 PF00005 ABC transporter Theam_0883 PF00005 ABC transporter Theam_0884 PF00448 SRP54-type protein, GTPase domain Theam_0884 PF02881 SRP54-type protein, helical bundle domain Theam_0885 PF02885 Glycosyl transferase family, helical bundle domain Theam_0885 PF00591 Glycosyl transferase family, a/b domain Theam_0887 PF00814 Glycoprotease family Theam_0890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Theam_0890 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Theam_0890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Theam_0890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Theam_0892 PF02457 DisA bacterial checkpoint controller nucleotide-binding Theam_0893 PF00809 Pterin binding enzyme Theam_0894 PF13735 tRNA nucleotidyltransferase domain 2 putative Theam_0894 PF01743 Poly A polymerase head domain Theam_0894 PF12627 Probable RNA and SrmB- binding site of polymerase A Theam_0896 PF03958 Bacterial type II/III secretion system short domain Theam_0896 PF00263 Bacterial type II and III secretion system protein Theam_0897 PF00437 Type II/IV secretion system protein Theam_0898 PF00482 Type II secretion system (T2SS), protein F Theam_0903 PF07660 Secretin and TonB N terminus short domain Theam_0903 PF03958 Bacterial type II/III secretion system short domain Theam_0903 PF00263 Bacterial type II and III secretion system protein Theam_0903 PF11741 AMIN domain Theam_0905 PF01509 TruB family pseudouridylate synthase (N terminal domain) Theam_0905 PF09157 Pseudouridine synthase II TruB, C-terminal Theam_0905 PF16198 tRNA pseudouridylate synthase B C-terminal domain Theam_0906 PF00270 DEAD/DEAH box helicase Theam_0906 PF01751 Toprim domain Theam_0906 PF17915 Reverse gyrase zinc finger Theam_0906 PF01131 DNA topoisomerase Theam_0907 PF00465 Iron-containing alcohol dehydrogenase Theam_0909 PF01029 NusB family Theam_0910 PF00885 6,7-dimethyl-8-ribityllumazine synthase Theam_0911 PF03060 Nitronate monooxygenase Theam_0912 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Theam_0912 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Theam_0913 PF02504 Fatty acid synthesis protein Theam_0914 PF01783 Ribosomal L32p protein family Theam_0917 PF05698 Bacterial trigger factor protein (TF) C-terminus Theam_0920 PF01255 Putative undecaprenyl diphosphate synthase Theam_0922 PF00586 AIR synthase related protein, N-terminal domain Theam_0922 PF02769 AIR synthase related protein, C-terminal domain Theam_0923 PF03649 Uncharacterised protein family (UPF0014) Theam_0924 PF01924 Hydrogenase formation hypA family Theam_0927 PF00350 Dynamin family Theam_0929 PF00158 Sigma-54 interaction domain Theam_0929 PF02954 Bacterial regulatory protein, Fis family Theam_0929 PF00072 Response regulator receiver domain Theam_0936 PF02142 MGS-like domain Theam_0936 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Theam_0936 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Theam_0938 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Theam_0938 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Theam_0942 PF02843 Phosphoribosylglycinamide synthetase, C domain Theam_0942 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Theam_0942 PF02844 Phosphoribosylglycinamide synthetase, N domain Theam_0943 PF01464 Transglycosylase SLT domain Theam_0943 PF10145 Phage-related minor tail protein Theam_0943 PF01551 Peptidase family M23 Theam_0944 PF01343 Peptidase family S49 Theam_0945 PF01351 Ribonuclease HII Theam_0948 PF01230 HIT domain Theam_0950 PF00589 Phage integrase family Theam_0950 PF02899 Phage integrase, N-terminal SAM-like domain Theam_0954 PF00091 Tubulin/FtsZ family, GTPase domain Theam_0954 PF12327 FtsZ family, C-terminal domain Theam_0955 PF00857 Isochorismatase family Theam_0957 PF04079 Segregation and condensation complex subunit ScpB Theam_0958 PF04101 Glycosyltransferase family 28 C-terminal domain Theam_0958 PF03033 Glycosyltransferase family 28 N-terminal domain Theam_0959 PF01098 Cell cycle protein Theam_0960 PF08245 Mur ligase middle domain Theam_0960 PF02875 Mur ligase family, glutamate ligase domain Theam_0962 PF05193 Peptidase M16 inactive domain Theam_0962 PF00675 Insulinase (Peptidase family M16) Theam_0968 PF02742 Iron dependent repressor, metal binding and dimerisation domain Theam_0968 PF01325 Iron dependent repressor, N-terminal DNA binding domain Theam_0969 PF04055 Radical SAM superfamily Theam_0970 PF04055 Radical SAM superfamily Theam_0972 PF02896 PEP-utilising enzyme, TIM barrel domain Theam_0972 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Theam_0972 PF00391 PEP-utilising enzyme, mobile domain Theam_0973 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Theam_0973 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Theam_0974 PF00342 Phosphoglucose isomerase Theam_0976 PF00483 Nucleotidyl transferase Theam_0978 PF09095 Domain of unknown function (DUF1926) Theam_0978 PF09094 Domain of unknown function (DUF1925) Theam_0978 PF03065 Glycosyl hydrolase family 57 Theam_0980 PF08323 Starch synthase catalytic domain Theam_0980 PF00534 Glycosyl transferases group 1 Theam_0982 PF03065 Glycosyl hydrolase family 57 Theam_0982 PF09210 Domain of unknown function (DUF1957) Theam_0983 PF00480 ROK family Theam_0984 PF00698 Acyl transferase domain Theam_0985 PF00317 Ribonucleotide reductase, all-alpha domain Theam_0985 PF02867 Ribonucleotide reductase, barrel domain Theam_0985 PF03477 ATP cone domain Theam_0988 PF00586 AIR synthase related protein, N-terminal domain Theam_0988 PF02769 AIR synthase related protein, C-terminal domain Theam_0989 PF02673 Bacitracin resistance protein BacA Theam_0990 PF00437 Type II/IV secretion system protein Theam_0991 PF00482 Type II secretion system (T2SS), protein F Theam_0992 PF00155 Aminotransferase class I and II Theam_0993 PF00196 Bacterial regulatory proteins, luxR family Theam_0993 PF00072 Response regulator receiver domain Theam_0994 PF12169 DNA polymerase III subunits gamma and tau domain III Theam_0995 PF00690 Cation transporter/ATPase, N-terminus Theam_0995 PF00689 Cation transporting ATPase, C-terminus Theam_0998 PF01645 Conserved region in glutamate synthase Theam_0998 PF13187 4Fe-4S dicluster domain Theam_0999 PF13247 4Fe-4S dicluster domain Theam_1000 PF04324 BFD-like [2Fe-2S] binding domain Theam_1000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Theam_1000 PF07992 Pyridine nucleotide-disulphide oxidoreductase Theam_1000 PF18267 Rubredoxin NAD+ reductase C-terminal domain Theam_1001 PF00310 Glutamine amidotransferases class-II Theam_1003 PF00291 Pyridoxal-phosphate dependent enzyme Theam_1004 PF00563 EAL domain Theam_1004 PF05231 MASE1 Theam_1005 PF01479 S4 domain Theam_1005 PF00579 tRNA synthetases class I (W and Y) Theam_1006 PF00583 Acetyltransferase (GNAT) family Theam_1007 PF12704 MacB-like periplasmic core domain Theam_1007 PF02687 FtsX-like permease family Theam_1008 PF00152 tRNA synthetases class II (D, K and N) Theam_1008 PF01336 OB-fold nucleic acid binding domain Theam_1009 PF02405 Permease MlaE Theam_1010 PF00005 ABC transporter Theam_1012 PF00117 Glutamine amidotransferase class-I Theam_1017 PF10397 Adenylosuccinate lyase C-terminus Theam_1017 PF00206 Lyase Theam_1019 PF00398 Ribosomal RNA adenine dimethylase Theam_1020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Theam_1020 PF00384 Molybdopterin oxidoreductase Theam_1020 PF01568 Molydopterin dinucleotide binding domain Theam_1020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Theam_1020 PF12838 4Fe-4S dicluster domain Theam_1021 PF02629 CoA binding domain Theam_1021 PF00549 CoA-ligase Theam_1023 PF03971 Monomeric isocitrate dehydrogenase Theam_1024 PF00330 Aconitase family (aconitate hydratase) Theam_1026 PF01139 tRNA-splicing ligase RtcB Theam_1030 PF00571 CBS domain Theam_1031 PF08676 MutL C terminal dimerisation domain Theam_1031 PF01119 DNA mismatch repair protein, C-terminal domain Theam_1032 PF00860 Permease family Theam_1033 PF01435 Peptidase family M48 Theam_1035 PF02441 Flavoprotein Theam_1035 PF04127 DNA / pantothenate metabolism flavoprotein Theam_1036 PF08032 RNA 2'-O ribose methyltransferase substrate binding Theam_1036 PF00588 SpoU rRNA Methylase family Theam_1039 PF01554 MatE Theam_1040 PF00512 His Kinase A (phospho-acceptor) domain Theam_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_1040 PF00672 HAMP domain Theam_1040 PF00989 PAS fold Theam_1041 PF03853 YjeF-related protein N-terminus Theam_1041 PF01256 Carbohydrate kinase Theam_1042 PF01327 Polypeptide deformylase Theam_1045 PF01502 Phosphoribosyl-AMP cyclohydrolase Theam_1046 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Theam_1048 PF17158 Membrane-associated sensor, integral membrane domain Theam_1048 PF00990 Diguanylate cyclase, GGDEF domain Theam_1049 PF01230 HIT domain Theam_1050 PF00905 Penicillin binding protein transpeptidase domain Theam_1050 PF03717 Penicillin-binding Protein dimerisation domain Theam_1050 PF03793 PASTA domain Theam_1052 PF01209 ubiE/COQ5 methyltransferase family Theam_1053 PF00581 Rhodanese-like domain Theam_1055 PF08264 Anticodon-binding domain of tRNA Theam_1055 PF09334 tRNA synthetases class I (M) Theam_1055 PF01588 Putative tRNA binding domain Theam_1056 PF01161 Phosphatidylethanolamine-binding protein Theam_1057 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Theam_1057 PF00753 Metallo-beta-lactamase superfamily Theam_1057 PF10996 Beta-Casp domain Theam_1060 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Theam_1061 PF00919 Uncharacterized protein family UPF0004 Theam_1061 PF04055 Radical SAM superfamily Theam_1063 PF14791 DNA polymerase beta thumb Theam_1063 PF02811 PHP domain Theam_1063 PF14716 Helix-hairpin-helix domain Theam_1066 PF01168 Alanine racemase, N-terminal domain Theam_1067 PF01959 3-dehydroquinate synthase II Theam_1069 PF01370 NAD dependent epimerase/dehydratase family Theam_1070 PF13411 MerR HTH family regulatory protein Theam_1071 PF07724 AAA domain (Cdc48 subfamily) Theam_1071 PF00004 ATPase family associated with various cellular activities (AAA) Theam_1071 PF02861 Clp amino terminal domain, pathogenicity island component Theam_1071 PF10431 C-terminal, D2-small domain, of ClpB protein Theam_1071 PF17871 AAA lid domain Theam_1075 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) Theam_1076 PF03190 Protein of unknown function, DUF255 Theam_1077 PF12544 Lysine-2,3-aminomutase Theam_1077 PF04055 Radical SAM superfamily Theam_1079 PF12706 Beta-lactamase superfamily domain Theam_1081 PF02810 SEC-C motif Theam_1081 PF07517 SecA DEAD-like domain Theam_1081 PF01043 SecA preprotein cross-linking domain Theam_1081 PF07516 SecA Wing and Scaffold domain Theam_1082 PF00877 NlpC/P60 family Theam_1083 PF13180 PDZ domain Theam_1083 PF17820 PDZ domain Theam_1084 PF00140 Sigma-70 factor, region 1.2 Theam_1084 PF04545 Sigma-70, region 4 Theam_1084 PF04542 Sigma-70 region 2 Theam_1084 PF04539 Sigma-70 region 3 Theam_1084 PF03979 Sigma-70 factor, region 1.1 Theam_1085 PF00691 OmpA family Theam_1085 PF13677 Membrane MotB of proton-channel complex MotA/MotB Theam_1086 PF00691 OmpA family Theam_1086 PF13677 Membrane MotB of proton-channel complex MotA/MotB Theam_1087 PF01618 MotA/TolQ/ExbB proton channel family Theam_1088 PF01565 FAD binding domain Theam_1088 PF02913 FAD linked oxidases, C-terminal domain Theam_1092 PF06082 Exopolysaccharide biosynthesis protein YbjH Theam_1093 PF03023 Lipid II flippase MurJ Theam_1094 PF01790 Prolipoprotein diacylglyceryl transferase Theam_1095 PF01063 Amino-transferase class IV Theam_1098 PF08334 Type II secretion system (T2SS), protein G Theam_1098 PF07963 Prokaryotic N-terminal methylation motif Theam_1099 PF00588 SpoU rRNA Methylase family Theam_1099 PF08032 RNA 2'-O ribose methyltransferase substrate binding Theam_1101 PF00989 PAS fold Theam_1101 PF00512 His Kinase A (phospho-acceptor) domain Theam_1101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_1102 PF00158 Sigma-54 interaction domain Theam_1102 PF02954 Bacterial regulatory protein, Fis family Theam_1102 PF00072 Response regulator receiver domain Theam_1106 PF01208 Uroporphyrinogen decarboxylase (URO-D) Theam_1107 PF03372 Endonuclease/Exonuclease/phosphatase family Theam_1108 PF01618 MotA/TolQ/ExbB proton channel family Theam_1110 PF01551 Peptidase family M23 Theam_1110 PF01464 Transglycosylase SLT domain Theam_1110 PF10145 Phage-related minor tail protein Theam_1111 PF01709 Transcriptional regulator Theam_1112 PF01402 Ribbon-helix-helix protein, copG family Theam_1112 PF08753 NikR C terminal nickel binding domain Theam_1113 PF01026 TatD related DNase Theam_1115 PF00750 tRNA synthetases class I (R) Theam_1115 PF05746 DALR anticodon binding domain Theam_1115 PF03485 Arginyl tRNA synthetase N terminal domain Theam_1116 PF17788 HypF Kae1-like domain Theam_1116 PF00708 Acylphosphatase Theam_1116 PF07503 HypF finger Theam_1116 PF01300 Telomere recombination Theam_1118 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Theam_1118 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Theam_1120 PF01022 Bacterial regulatory protein, arsR family Theam_1121 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Theam_1121 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Theam_1122 PF00374 Nickel-dependent hydrogenase Theam_1124 PF01750 Hydrogenase maturation protease Theam_1125 PF01455 HupF/HypC family Theam_1126 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Theam_1127 PF01209 ubiE/COQ5 methyltransferase family Theam_1128 PF02492 CobW/HypB/UreG, nucleotide-binding domain Theam_1131 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Theam_1132 PF00301 Rubredoxin Theam_1133 PF00753 Metallo-beta-lactamase superfamily Theam_1133 PF00258 Flavodoxin Theam_1137 PF01618 MotA/TolQ/ExbB proton channel family Theam_1138 PF02637 GatB domain Theam_1138 PF02934 GatB/GatE catalytic domain Theam_1139 PF03600 Citrate transporter Theam_1140 PF00912 Transglycosylase Theam_1140 PF00905 Penicillin binding protein transpeptidase domain Theam_1141 PF00521 DNA gyrase/topoisomerase IV, subunit A Theam_1141 PF03989 DNA gyrase C-terminal domain, beta-propeller Theam_1142 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Theam_1142 PF02403 Seryl-tRNA synthetase N-terminal domain Theam_1147 PF05567 Neisseria PilC beta-propeller domain Theam_1150 PF00072 Response regulator receiver domain Theam_1150 PF00486 Transcriptional regulatory protein, C terminal Theam_1151 PF00005 ABC transporter Theam_1156 PF00034 Cytochrome c Theam_1156 PF03150 Di-haem cytochrome c peroxidase Theam_1159 PF02561 Flagellar protein FliS Theam_1160 PF07195 Flagellar hook-associated protein 2 C-terminus Theam_1160 PF07196 Flagellin hook IN motif Theam_1160 PF02465 Flagellar hook-associated protein 2 N-terminus Theam_1162 PF00669 Bacterial flagellin N-terminal helical region Theam_1162 PF00700 Bacterial flagellin C-terminal helical region Theam_1163 PF13181 Tetratricopeptide repeat Theam_1163 PF00535 Glycosyl transferase family 2 Theam_1166 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Theam_1166 PF01872 RibD C-terminal domain Theam_1168 PF00579 tRNA synthetases class I (W and Y) Theam_1173 PF01259 SAICAR synthetase Theam_1174 PF00156 Phosphoribosyl transferase domain Theam_1176 PF03793 PASTA domain Theam_1176 PF00905 Penicillin binding protein transpeptidase domain Theam_1176 PF03717 Penicillin-binding Protein dimerisation domain Theam_1177 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Theam_1177 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Theam_1177 PF02824 TGS domain Theam_1177 PF03129 Anticodon binding domain Theam_1178 PF00707 Translation initiation factor IF-3, C-terminal domain Theam_1178 PF05198 Translation initiation factor IF-3, N-terminal domain Theam_1179 PF01632 Ribosomal protein L35 Theam_1180 PF00453 Ribosomal protein L20 Theam_1182 PF01541 GIY-YIG catalytic domain Theam_1182 PF08459 UvrC Helix-hairpin-helix N-terminal Theam_1186 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Theam_1188 PF00204 DNA gyrase B Theam_1188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_1188 PF01751 Toprim domain Theam_1188 PF00986 DNA gyrase B subunit, carboxyl terminus Theam_1189 PF02224 Cytidylate kinase Theam_1190 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Theam_1190 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Theam_1191 PF00633 Helix-hairpin-helix motif Theam_1191 PF00730 HhH-GPD superfamily base excision DNA repair protein Theam_1191 PF10576 Iron-sulfur binding domain of endonuclease III Theam_1192 PF00793 DAHP synthetase I family Theam_1194 PF00849 RNA pseudouridylate synthase Theam_1194 PF01479 S4 domain Theam_1197 PF01926 50S ribosome-binding GTPase Theam_1197 PF07650 KH domain Theam_1200 PF00849 RNA pseudouridylate synthase Theam_1200 PF01479 S4 domain Theam_1203 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Theam_1203 PF01409 tRNA synthetases class II core domain (F) Theam_1204 PF03483 B3/4 domain Theam_1204 PF01588 Putative tRNA binding domain Theam_1204 PF03484 tRNA synthetase B5 domain Theam_1204 PF03147 Ferredoxin-fold anticodon binding domain Theam_1204 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Theam_1206 PF01812 5-formyltetrahydrofolate cyclo-ligase family Theam_1207 PF12072 Domain of unknown function (DUF3552) Theam_1207 PF00013 KH domain Theam_1207 PF01966 HD domain Theam_1208 PF09106 Elongation factor SelB, winged helix Theam_1208 PF09105 Elongation factor SelB, winged helix Theam_1208 PF03144 Elongation factor Tu domain 2 Theam_1208 PF09107 Elongation factor SelB, winged helix Theam_1208 PF00009 Elongation factor Tu GTP binding domain Theam_1211 PF02222 ATP-grasp domain Theam_1212 PF01625 Peptide methionine sulfoxide reductase Theam_1213 PF00795 Carbon-nitrogen hydrolase Theam_1215 PF14748 Pyrroline-5-carboxylate reductase dimerisation Theam_1215 PF03807 NADP oxidoreductase coenzyme F420-dependent Theam_1217 PF08543 Phosphomethylpyrimidine kinase Theam_1218 PF02502 Ribose/Galactose Isomerase Theam_1219 PF00464 Serine hydroxymethyltransferase Theam_1220 PF00924 Mechanosensitive ion channel Theam_1220 PF05552 Conserved TM helix Theam_1221 PF00118 TCP-1/cpn60 chaperonin family Theam_1222 PF00166 Chaperonin 10 Kd subunit Theam_1226 PF00384 Molybdopterin oxidoreductase Theam_1226 PF01568 Molydopterin dinucleotide binding domain Theam_1226 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Theam_1228 PF00571 CBS domain Theam_1228 PF00478 IMP dehydrogenase / GMP reductase domain Theam_1229 PF02616 Segregation and condensation protein ScpA Theam_1231 PF01464 Transglycosylase SLT domain Theam_1232 PF12801 4Fe-4S binding domain Theam_1232 PF04205 FMN-binding domain Theam_1234 PF10609 NUBPL iron-transfer P-loop NTPase Theam_1234 PF01883 Iron-sulfur cluster assembly protein Theam_1235 PF00459 Inositol monophosphatase family Theam_1237 PF00486 Transcriptional regulatory protein, C terminal Theam_1237 PF00072 Response regulator receiver domain Theam_1238 PF16736 Single Cache-like Theam_1238 PF00989 PAS fold Theam_1238 PF00512 His Kinase A (phospho-acceptor) domain Theam_1238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_1240 PF03061 Thioesterase superfamily Theam_1240 PF01008 Initiation factor 2 subunit family Theam_1242 PF03462 PCRF domain Theam_1242 PF00472 RF-1 domain Theam_1244 PF04055 Radical SAM superfamily Theam_1244 PF06463 Molybdenum Cofactor Synthesis C Theam_1246 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Theam_1246 PF14602 Hexapeptide repeat of succinyl-transferase Theam_1247 PF09334 tRNA synthetases class I (M) Theam_1247 PF08264 Anticodon-binding domain of tRNA Theam_1247 PF01588 Putative tRNA binding domain Theam_1249 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Theam_1249 PF05221 S-adenosyl-L-homocysteine hydrolase Theam_1250 PF00132 Bacterial transferase hexapeptide (six repeats) Theam_1250 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Theam_1252 PF07244 Surface antigen variable number repeat Theam_1252 PF01103 Surface antigen Theam_1253 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_1253 PF00512 His Kinase A (phospho-acceptor) domain Theam_1253 PF00989 PAS fold Theam_1253 PF16736 Single Cache-like Theam_1254 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Theam_1254 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Theam_1256 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Theam_1256 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Theam_1257 PF01066 CDP-alcohol phosphatidyltransferase Theam_1258 PF01594 AI-2E family transporter Theam_1259 PF01121 Dephospho-CoA kinase Theam_1260 PF13277 YmdB-like protein Theam_1261 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Theam_1261 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Theam_1264 PF01479 S4 domain Theam_1265 PF13193 AMP-binding enzyme C-terminal domain Theam_1265 PF00501 AMP-binding enzyme Theam_1266 PF01678 Diaminopimelate epimerase Theam_1267 PF03167 Uracil DNA glycosylase superfamily Theam_1268 PF00730 HhH-GPD superfamily base excision DNA repair protein Theam_1268 PF00633 Helix-hairpin-helix motif Theam_1268 PF10576 Iron-sulfur binding domain of endonuclease III Theam_1269 PF00919 Uncharacterized protein family UPF0004 Theam_1269 PF01938 TRAM domain Theam_1269 PF04055 Radical SAM superfamily Theam_1271 PF13085 2Fe-2S iron-sulfur cluster binding domain Theam_1271 PF13183 4Fe-4S dicluster domain Theam_1272 PF00890 FAD binding domain Theam_1272 PF02910 Fumarate reductase flavoprotein C-term Theam_1273 PF00890 FAD binding domain Theam_1273 PF02910 Fumarate reductase flavoprotein C-term Theam_1274 PF13183 4Fe-4S dicluster domain Theam_1274 PF13085 2Fe-2S iron-sulfur cluster binding domain Theam_1275 PF02754 Cysteine-rich domain Theam_1278 PF00939 Sodium:sulfate symporter transmembrane region Theam_1279 PF02887 Pyruvate kinase, alpha/beta domain Theam_1279 PF00391 PEP-utilising enzyme, mobile domain Theam_1279 PF00224 Pyruvate kinase, barrel domain Theam_1281 PF04286 Protein of unknown function (DUF445) Theam_1282 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Theam_1282 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Theam_1282 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Theam_1282 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Theam_1287 PF01202 Shikimate kinase Theam_1289 PF00535 Glycosyl transferase family 2 Theam_1290 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Theam_1293 PF02146 Sir2 family Theam_1296 PF00753 Metallo-beta-lactamase superfamily Theam_1296 PF16123 Hydroxyacylglutathione hydrolase C-terminus Theam_1297 PF02978 Signal peptide binding domain Theam_1297 PF02881 SRP54-type protein, helical bundle domain Theam_1297 PF00448 SRP54-type protein, GTPase domain Theam_1298 PF00886 Ribosomal protein S16 Theam_1301 PF00923 Transaldolase/Fructose-6-phosphate aldolase Theam_1303 PF00753 Metallo-beta-lactamase superfamily Theam_1305 PF16916 Dimerisation domain of Zinc Transporter Theam_1305 PF01545 Cation efflux family Theam_1308 PF01894 Uncharacterised protein family UPF0047 Theam_1309 PF02569 Pantoate-beta-alanine ligase Theam_1310 PF03631 Virulence factor BrkB Theam_1312 PF01472 PUA domain Theam_1312 PF00696 Amino acid kinase family Theam_1313 PF01018 GTP1/OBG Theam_1313 PF01926 50S ribosome-binding GTPase Theam_1316 PF05175 Methyltransferase small domain Theam_1318 PF00300 Histidine phosphatase superfamily (branch 1) Theam_1319 PF13089 Polyphosphate kinase N-terminal domain Theam_1319 PF17941 Polyphosphate kinase C-terminal domain 1 Theam_1319 PF13090 Polyphosphate kinase C-terminal domain 2 Theam_1319 PF02503 Polyphosphate kinase middle domain Theam_1321 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Theam_1321 PF07992 Pyridine nucleotide-disulphide oxidoreductase Theam_1323 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Theam_1324 PF04055 Radical SAM superfamily Theam_1326 PF03966 Trm112p-like protein Theam_1327 PF00815 Histidinol dehydrogenase Theam_1328 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Theam_1328 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Theam_1330 PF01979 Amidohydrolase family Theam_1334 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Theam_1335 PF00027 Cyclic nucleotide-binding domain Theam_1335 PF00325 Bacterial regulatory proteins, crp family Theam_1336 PF11756 Nitrous oxide-stimulated promoter Theam_1341 PF17746 SfsA N-terminal OB domain Theam_1341 PF03749 Sugar fermentation stimulation protein RE domain Theam_1342 PF00300 Histidine phosphatase superfamily (branch 1) Theam_1343 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Theam_1343 PF07992 Pyridine nucleotide-disulphide oxidoreductase Theam_1344 PF09936 SAM-dependent RNA methyltransferase Theam_1345 PF03109 ABC1 family Theam_1347 PF04453 LPS transport system D Theam_1347 PF03968 OstA-like protein Theam_1350 PF00005 ABC transporter Theam_1351 PF14245 Type IV pilin PilA Theam_1351 PF07963 Prokaryotic N-terminal methylation motif Theam_1354 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Theam_1354 PF00753 Metallo-beta-lactamase superfamily Theam_1354 PF10996 Beta-Casp domain Theam_1355 PF00085 Thioredoxin Theam_1356 PF13603 Leucyl-tRNA synthetase, Domain 2 Theam_1356 PF00133 tRNA synthetases class I (I, L, M and V) Theam_1356 PF08264 Anticodon-binding domain of tRNA Theam_1356 PF09334 tRNA synthetases class I (M) Theam_1364 PF01227 GTP cyclohydrolase I Theam_1365 PF17862 AAA+ lid domain Theam_1365 PF00004 ATPase family associated with various cellular activities (AAA) Theam_1365 PF01434 Peptidase family M41 Theam_1365 PF06480 FtsH Extracellular Theam_1367 PF01171 PP-loop family Theam_1367 PF11734 TilS substrate C-terminal domain Theam_1368 PF00764 Arginosuccinate synthase Theam_1369 PF05698 Bacterial trigger factor protein (TF) C-terminus Theam_1369 PF05697 Bacterial trigger factor protein (TF) Theam_1370 PF00158 Sigma-54 interaction domain Theam_1370 PF00072 Response regulator receiver domain Theam_1370 PF02954 Bacterial regulatory protein, Fis family Theam_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Theam_1371 PF00672 HAMP domain Theam_1371 PF16527 Two-component sensor protein CpxA, periplasmic domain Theam_1371 PF00512 His Kinase A (phospho-acceptor) domain Theam_1372 PF00586 AIR synthase related protein, N-terminal domain Theam_1372 PF02769 AIR synthase related protein, C-terminal domain Theam_1372 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Theam_1373 PF09123 Domain of unknown function (DUF1931) Theam_1378 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Theam_1378 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Theam_1378 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Theam_1385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Theam_1385 PF00460 Flagella basal body rod protein Theam_1389 PF06968 Biotin and Thiamin Synthesis associated domain Theam_1389 PF04055 Radical SAM superfamily Theam_1390 PF00025 ADP-ribosylation factor family Theam_1392 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Theam_1393 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Theam_1393 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Theam_1395 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Theam_1397 PF02575 YbaB/EbfC DNA-binding family Theam_1398 PF16360 GTP-binding GTPase Middle Region Theam_1398 PF01926 50S ribosome-binding GTPase Theam_1398 PF13167 GTP-binding GTPase N-terminal Theam_1401 PF08340 Domain of unknown function (DUF1732) Theam_1401 PF03755 YicC-like family, N-terminal region Theam_1402 PF00625 Guanylate kinase Theam_1404 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Theam_1405 PF13183 4Fe-4S dicluster domain Theam_1405 PF02754 Cysteine-rich domain Theam_1407 PF01966 HD domain Theam_1408 PF08442 ATP-grasp domain Theam_1408 PF00549 CoA-ligase Theam_1409 PF00549 CoA-ligase Theam_1409 PF02629 CoA binding domain Theam_1411 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Theam_1411 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Theam_1411 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Theam_1412 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Theam_1418 PF00202 Aminotransferase class-III Theam_1422 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Theam_1422 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Theam_1424 PF14492 Elongation Factor G, domain II Theam_1424 PF00009 Elongation factor Tu GTP binding domain Theam_1424 PF06421 GTP-binding protein LepA C-terminus Theam_1424 PF03144 Elongation factor Tu domain 2 Theam_1424 PF00679 Elongation factor G C-terminus Theam_1428 PF07669 Eco57I restriction-modification methylase Theam_1428 PF12950 TaqI-like C-terminal specificity domain Theam_1429 PF00176 SNF2 family N-terminal domain Theam_1429 PF00271 Helicase conserved C-terminal domain Theam_1430 PF00719 Inorganic pyrophosphatase Theam_1432 PF02421 Ferrous iron transport protein B Theam_1432 PF17910 FeoB cytosolic helical domain Theam_1432 PF07664 Ferrous iron transport protein B C terminus Theam_1432 PF07670 Nucleoside recognition Theam_1433 PF18073 Rubredoxin metal binding domain Theam_1436 PF00633 Helix-hairpin-helix motif Theam_1436 PF10576 Iron-sulfur binding domain of endonuclease III Theam_1436 PF00730 HhH-GPD superfamily base excision DNA repair protein Theam_1437 PF07238 PilZ domain Theam_1440 PF01312 FlhB HrpN YscU SpaS Family Theam_1441 PF01311 Bacterial export proteins, family 1 Theam_1442 PF01313 Bacterial export proteins, family 3 Theam_1443 PF00813 FliP family Theam_1445 PF03748 Flagellar basal body-associated protein FliL Theam_1446 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Theam_1446 PF00460 Flagella basal body rod protein Theam_1446 PF07559 Flagellar basal body protein FlaE Theam_1447 PF03963 Flagellar hook capping protein - N-terminal region Theam_1448 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Theam_1448 PF18269 T3SS EscN ATPase C-terminal domain Theam_1448 PF02874 ATP synthase alpha/beta family, beta-barrel domain Theam_1450 PF08345 Flagellar M-ring protein C-terminal Theam_1450 PF01514 Secretory protein of YscJ/FliF family Theam_1451 PF02049 Flagellar hook-basal body complex protein FliE Theam_1452 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Theam_1452 PF00460 Flagella basal body rod protein Theam_1456 PF04542 Sigma-70 region 2 Theam_1456 PF04539 Sigma-70 region 3 Theam_1456 PF04545 Sigma-70, region 4 Theam_1457 PF10609 NUBPL iron-transfer P-loop NTPase Theam_1458 PF00448 SRP54-type protein, GTPase domain Theam_1459 PF00771 FHIPEP family Theam_1461 PF02119 Flagellar P-ring protein Theam_1462 PF02107 Flagellar L-ring protein Theam_1464 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Theam_1464 PF00460 Flagella basal body rod protein Theam_1465 PF00460 Flagella basal body rod protein Theam_1465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Theam_1467 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Theam_1467 PF02154 Flagellar motor switch protein FliM Theam_1468 PF01706 FliG C-terminal domain Theam_1468 PF14842 FliG N-terminal domain Theam_1468 PF14841 FliG middle domain Theam_1470 PF03600 Citrate transporter Theam_1471 PF13476 AAA domain Theam_1472 PF01926 50S ribosome-binding GTPase Theam_1473 PF00578 AhpC/TSA family Theam_1474 PF07992 Pyridine nucleotide-disulphide oxidoreductase Theam_1475 PF00085 Thioredoxin Theam_1476 PF01022 Bacterial regulatory protein, arsR family Theam_1477 PF01875 Memo-like protein Theam_1478 PF02261 Aspartate decarboxylase Theam_1479 PF01658 Myo-inositol-1-phosphate synthase Theam_1482 PF03060 Nitronate monooxygenase Theam_1483 PF04463 Protein of unknown function (DUF523) Theam_1484 PF00675 Insulinase (Peptidase family M16) Theam_1484 PF05193 Peptidase M16 inactive domain Theam_1485 PF00551 Formyl transferase Theam_1486 PF02769 AIR synthase related protein, C-terminal domain Theam_1486 PF00586 AIR synthase related protein, N-terminal domain Theam_1487 PF01966 HD domain Theam_1488 PF00361 Proton-conducting membrane transporter Theam_1489 PF00361 Proton-conducting membrane transporter Theam_1490 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Theam_1490 PF00361 Proton-conducting membrane transporter Theam_1490 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Theam_1491 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Theam_1492 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Theam_1494 PF00146 NADH dehydrogenase Theam_1495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Theam_1496 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Theam_1496 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Theam_1497 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Theam_1499 PF00005 ABC transporter Theam_1500 PF00528 Binding-protein-dependent transport system inner membrane component Theam_1501 PF00528 Binding-protein-dependent transport system inner membrane component Theam_1502 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Theam_1502 PF14579 Helix-hairpin-helix motif Theam_1502 PF02811 PHP domain Theam_1502 PF07733 Bacterial DNA polymerase III alpha NTPase domain Theam_1503 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Theam_1504 PF01966 HD domain Theam_1505 PF00270 DEAD/DEAH box helicase Theam_1505 PF00271 Helicase conserved C-terminal domain Theam_1506 PF00313 'Cold-shock' DNA-binding domain Theam_1509 PF01142 tRNA pseudouridine synthase D (TruD) Theam_1510 PF01842 ACT domain Theam_1510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Theam_1510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Theam_1511 PF05496 Holliday junction DNA helicase RuvB P-loop domain Theam_1511 PF05491 RuvB C-terminal winged helix domain Theam_1511 PF17864 RuvB AAA lid domain Theam_1512 PF01330 RuvA N terminal domain Theam_1512 PF07499 RuvA, C-terminal domain Theam_1517 PF01008 Initiation factor 2 subunit family Theam_1519 PF03819 MazG nucleotide pyrophosphohydrolase domain Theam_1520 PF01406 tRNA synthetases class I (C) catalytic domain Theam_1520 PF09190 DALR domain Theam_1522 PF00005 ABC transporter Theam_1525 PF01891 Cobalt uptake substrate-specific transmembrane region Theam_1530 PF01142 tRNA pseudouridine synthase D (TruD) Theam_1531 PF08245 Mur ligase middle domain Theam_1531 PF02875 Mur ligase family, glutamate ligase domain Theam_1533 PF09827 CRISPR associated protein Cas2 Theam_1534 PF09827 CRISPR associated protein Cas2 Theam_1535 PF09827 CRISPR associated protein Cas2 Theam_1539 PF02785 Biotin carboxylase C-terminal domain Theam_1539 PF00289 Biotin carboxylase, N-terminal domain Theam_1539 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Theam_1540 PF02436 Conserved carboxylase domain Theam_1540 PF00682 HMGL-like Theam_1540 PF00364 Biotin-requiring enzyme Theam_1542 PF01078 Magnesium chelatase, subunit ChlI Theam_1542 PF13335 Magnesium chelatase, subunit ChlI C-terminal Theam_1544 PF01264 Chorismate synthase Theam_1545 PF01245 Ribosomal protein L19 Theam_1546 PF01351 Ribonuclease HII Theam_1548 PF04760 Translation initiation factor IF-2, N-terminal region Theam_1548 PF00009 Elongation factor Tu GTP binding domain Theam_1548 PF11987 Translation-initiation factor 2 Theam_1550 PF00294 pfkB family carbohydrate kinase Theam_1551 PF03707 Bacterial signalling protein N terminal repeat Theam_1551 PF00990 Diguanylate cyclase, GGDEF domain Theam_1551 PF00563 EAL domain Theam_1552 PF00268 Ribonucleotide reductase, small chain Theam_1554 PF00317 Ribonucleotide reductase, all-alpha domain Theam_1554 PF03477 ATP cone domain Theam_1554 PF02867 Ribonucleotide reductase, barrel domain Theam_1555 PF08534 Redoxin Theam_1556 PF04445 Putative SAM-dependent methyltransferase Theam_1560 PF00672 HAMP domain Theam_1560 PF02203 Tar ligand binding domain homologue Theam_1560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Theam_1561 PF01717 Cobalamin-independent synthase, Catalytic domain Theam_1561 PF08267 Cobalamin-independent synthase, N-terminal domain Theam_1562 PF04055 Radical SAM superfamily Theam_1566 PF03061 Thioesterase superfamily Theam_1567 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Theam_1567 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Theam_1567 PF02142 MGS-like domain Theam_1569 PF01189 16S rRNA methyltransferase RsmB/F Theam_1569 PF01029 NusB family Theam_1572 PF01142 tRNA pseudouridine synthase D (TruD) Theam_1575 PF01551 Peptidase family M23 Theam_1575 PF01464 Transglycosylase SLT domain Theam_1575 PF10145 Phage-related minor tail protein Theam_1576 PF00194 Eukaryotic-type carbonic anhydrase Theam_1577 PF01979 Amidohydrolase family Theam_1577 PF13382 Adenine deaminase C-terminal domain Theam_1578 PF05000 RNA polymerase Rpb1, domain 4 Theam_1578 PF04983 RNA polymerase Rpb1, domain 3 Theam_1578 PF00623 RNA polymerase Rpb1, domain 2 Theam_1578 PF04997 RNA polymerase Rpb1, domain 1 Theam_1578 PF04998 RNA polymerase Rpb1, domain 5 Theam_1579 PF00562 RNA polymerase Rpb2, domain 6 Theam_1579 PF04561 RNA polymerase Rpb2, domain 2 Theam_1579 PF10385 RNA polymerase beta subunit external 1 domain Theam_1579 PF04563 RNA polymerase beta subunit Theam_1579 PF04560 RNA polymerase Rpb2, domain 7 Theam_1579 PF04565 RNA polymerase Rpb2, domain 3 Theam_1580 PF00542 Ribosomal protein L7/L12 C-terminal domain Theam_1580 PF16320 Ribosomal protein L7/L12 dimerisation domain Theam_1581 PF00466 Ribosomal protein L10 Theam_1582 PF00687 Ribosomal protein L1p/L10e family Theam_1583 PF00298 Ribosomal protein L11, RNA binding domain Theam_1583 PF03946 Ribosomal protein L11, N-terminal domain Theam_1584 PF00467 KOW motif Theam_1584 PF02357 Transcription termination factor nusG Theam_1584 PF07009 NusG domain II Theam_1585 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Theam_1586 PF00471 Ribosomal protein L33 Theam_1587 PF00009 Elongation factor Tu GTP binding domain Theam_1587 PF03144 Elongation factor Tu domain 2 Theam_1587 PF03143 Elongation factor Tu C-terminal domain Theam_1590 PF01782 RimM N-terminal domain Theam_1590 PF05239 PRC-barrel domain Theam_1591 PF01746 tRNA (Guanine-1)-methyltransferase Theam_1595 PF01966 HD domain Theam_1596 PF01842 ACT domain Theam_1596 PF01817 Chorismate mutase type II Theam_1596 PF00800 Prephenate dehydratase Theam_1598 PF00475 Imidazoleglycerol-phosphate dehydratase Theam_1600 PF00202 Aminotransferase class-III Theam_1605 PF00119 ATP synthase A chain Theam_1606 PF00137 ATP synthase subunit C Theam_1608 PF01266 FAD dependent oxidoreductase Theam_1608 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Theam_1610 PF01938 TRAM domain Theam_1610 PF04055 Radical SAM superfamily Theam_1610 PF00919 Uncharacterized protein family UPF0004 Theam_1611 PF00691 OmpA family Theam_1611 PF04972 BON domain Theam_1612 PF00171 Aldehyde dehydrogenase family Theam_1619 PF18019 HD domain Theam_1622 PF09827 CRISPR associated protein Cas2 Theam_1625 PF00005 ABC transporter Theam_1627 PF02896 PEP-utilising enzyme, TIM barrel domain Theam_1627 PF00391 PEP-utilising enzyme, mobile domain Theam_1627 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Theam_1628 PF02092 Glycyl-tRNA synthetase beta subunit Theam_1628 PF05746 DALR anticodon binding domain Theam_1629 PF02091 Glycyl-tRNA synthetase alpha subunit Theam_1632 PF06508 Queuosine biosynthesis protein QueC Theam_1634 PF18693 TRAM domain Theam_1634 PF04055 Radical SAM superfamily Theam_1634 PF00919 Uncharacterized protein family UPF0004 Theam_1638 PF00288 GHMP kinases N terminal domain Theam_1639 PF01522 Polysaccharide deacetylase Theam_1640 PF00535 Glycosyl transferase family 2 Theam_1641 PF13439 Glycosyltransferase Family 4 Theam_1641 PF00534 Glycosyl transferases group 1 Theam_1644 PF00271 Helicase conserved C-terminal domain Theam_1644 PF18074 Primosomal protein N C-terminal domain Theam_1644 PF17764 3′ DNA-binding domain (3′BD) Theam_1644 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Theam_1644 PF04851 Type III restriction enzyme, res subunit Theam_1647 PF01425 Amidase Theam_1648 PF02686 Glu-tRNAGln amidotransferase C subunit Theam_1651 PF03652 Holliday junction resolvase Theam_1656 PF00430 ATP synthase B/B' CF(0) Theam_1659 PF00306 ATP synthase alpha/beta chain, C terminal domain Theam_1659 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Theam_1659 PF02874 ATP synthase alpha/beta family, beta-barrel domain Theam_1660 PF00231 ATP synthase Theam_1661 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Theam_1661 PF02874 ATP synthase alpha/beta family, beta-barrel domain Theam_1662 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Theam_1664 PF13520 Amino acid permease Theam_1667 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase Theam_1668 PF01134 Glucose inhibited division protein A Theam_1668 PF13932 GidA associated domain Theam_1669 PF02527 rRNA small subunit methyltransferase G Theam_1672 PF08544 GHMP kinases C terminal Theam_1676 PF08264 Anticodon-binding domain of tRNA Theam_1676 PF00133 tRNA synthetases class I (I, L, M and V) Theam_1676 PF10458 Valyl tRNA synthetase tRNA binding arm Theam_1677 PF14437 MafB19-like deaminase Theam_1678 PF00154 recA bacterial DNA recombination protein Theam_1679 PF00437 Type II/IV secretion system protein Theam_1682 PF01411 tRNA synthetases class II (A) Theam_1682 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Theam_1682 PF02272 DHHA1 domain Theam_1688 PF00575 S1 RNA binding domain Theam_1688 PF13184 NusA-like KH domain Theam_1688 PF08529 NusA N-terminal domain Theam_1689 PF17384 RimP C-terminal SH3 domain Theam_1689 PF02576 RimP N-terminal domain Theam_1690 PF01668 SmpB protein Theam_1691 PF00575 S1 RNA binding domain Theam_1692 PF02401 LytB protein Theam_1693 PF01553 Acyltransferase Theam_1694 PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 Theam_1695 PF00909 Ammonium Transporter Family Theam_1696 PF01795 MraW methylase family Theam_1697 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Theam_1697 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Theam_1702 PF04055 Radical SAM superfamily Theam_1702 PF06969 HemN C-terminal domain Theam_1704 PF06803 Protein of unknown function (DUF1232) Theam_1712 PF01975 Survival protein SurE Theam_1713 PF09335 SNARE associated Golgi protein Theam_1716 PF17820 PDZ domain Theam_1716 PF02163 Peptidase family M50 Theam_1717 PF01479 S4 domain Theam_1717 PF01728 FtsJ-like methyltransferase Theam_1723 PF00830 Ribosomal L28 family Theam_1725 PF00218 Indole-3-glycerol phosphate synthase Theam_1726 PF12804 MobA-like NTP transferase domain Theam_1726 PF00132 Bacterial transferase hexapeptide (six repeats) Theam_1727 PF00293 NUDIX domain Theam_1727 PF13344 Haloacid dehalogenase-like hydrolase Theam_1729 PF02547 Queuosine biosynthesis protein Theam_1745 PF08448 PAS fold Theam_1745 PF00990 Diguanylate cyclase, GGDEF domain Theam_1748 PF01751 Toprim domain Theam_1748 PF01131 DNA topoisomerase Theam_1762 PF02163 Peptidase family M50 Theam_1762 PF17820 PDZ domain Theam_1763 PF00589 Phage integrase family Theam_1763 PF02899 Phage integrase, N-terminal SAM-like domain Theam_1799 PF00437 Type II/IV secretion system protein Theam_1801 PF07963 Prokaryotic N-terminal methylation motif Theam_1801 PF00114 Pilin (bacterial filament) Theam_1804 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Theam_1804 PF00437 Type II/IV secretion system protein Theam_1810 PF01022 Bacterial regulatory protein, arsR family Theam_1812 PF01434 Peptidase family M41 Theam_1812 PF17862 AAA+ lid domain Theam_1812 PF00004 ATPase family associated with various cellular activities (AAA) Theam_1825 PF08406 CbbQ/NirQ/NorQ C-terminal Theam_1825 PF07728 AAA domain (dynein-related subfamily) Theam_1831 PF00436 Single-strand binding protein family