Tlie_0001 SM00382 ATPases associated with a variety of cellular activities Tlie_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Tlie_0002 SM00480 DNA polymerase III beta subunit Tlie_0004 SM01228 Tlie_0004 Tlie_0012 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_0013 SM00895 Tlie_0013 Tlie_0023 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0023 SM00895 Tlie_0023 Tlie_0032 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0032 SM00895 Tlie_0032 Tlie_0035 SM00387 Histidine kinase-like ATPases Tlie_0035 SM00388 His Kinase A (phosphoacceptor) domain Tlie_0036 SM00448 cheY-homologous receiver domain Tlie_0036 SM00862 Transcriptional regulatory protein, C terminal Tlie_0038 SM00382 ATPases associated with a variety of cellular activities Tlie_0045 SM00564 beta-propeller repeat Tlie_0053 SM00382 ATPases associated with a variety of cellular activities Tlie_0055 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tlie_0055 SM00267 diguanylate cyclase Tlie_0061 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Tlie_0061 SM00091 PAS domain Tlie_0064 SM00062 Bacterial periplasmic substrate-binding proteins Tlie_0064 SM00091 PAS domain Tlie_0064 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0067 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_0077 SM00382 ATPases associated with a variety of cellular activities Tlie_0084 SM00073 Histidine Phosphotransfer domain Tlie_0084 SM00260 Two component signalling adaptor domain Tlie_0084 SM00387 Histidine kinase-like ATPases Tlie_0084 SM01231 Tlie_0084 Tlie_0093 SM00138 Methyltransferase, chemotaxis proteins Tlie_0094 SM00382 ATPases associated with a variety of cellular activities Tlie_0094 SM00962 SRP54-type protein, GTPase domain Tlie_0097 SM00448 cheY-homologous receiver domain Tlie_0098 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0106 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tlie_0106 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tlie_0111 SM00858 Tlie_0111 Tlie_0118 SM00448 cheY-homologous receiver domain Tlie_0120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tlie_0123 SM00260 Two component signalling adaptor domain Tlie_0126 SM00530 Helix-turn-helix XRE-family like proteins Tlie_0136 SM00260 Two component signalling adaptor domain Tlie_0138 SM01329 Tlie_0138 Tlie_0141 SM00917 LeuA allosteric (dimerisation) domain Tlie_0146 SM00855 Phosphoglycerate mutase family Tlie_0153 SM00382 ATPases associated with a variety of cellular activities Tlie_0158 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0158 SM00895 Tlie_0158 Tlie_0160 SM00829 Enoylreductase Tlie_0165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tlie_0169 SM00849 Metallo-beta-lactamase superfamily Tlie_0181 SM00091 PAS domain Tlie_0181 SM00267 diguanylate cyclase Tlie_0182 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0183 SM00881 CoA binding domain Tlie_0191 SM00342 helix_turn_helix, arabinose operon control protein Tlie_0191 SM00448 cheY-homologous receiver domain Tlie_0192 SM00877 Tlie_0192 Tlie_0194 SM00877 Tlie_0194 Tlie_0195 SM00877 Tlie_0195 Tlie_0201 SM00877 Tlie_0201 Tlie_0202 SM00877 Tlie_0202 Tlie_0206 SM00877 Tlie_0206 Tlie_0211 SM00877 Tlie_0211 Tlie_0218 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0225 SM00849 Metallo-beta-lactamase superfamily Tlie_0228 SM00671 Sel1-like repeats. Tlie_0254 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tlie_0254 SM00267 diguanylate cyclase Tlie_0258 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0258 SM00895 Tlie_0258 Tlie_0259 SM00831 Cation transporter/ATPase, N-terminus Tlie_0270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0273 SM00382 ATPases associated with a variety of cellular activities Tlie_0279 SM00797 Allophanate hydrolase subunit 2 Tlie_0280 SM00796 Allophanate hydrolase subunit 1 Tlie_0283 SM00382 ATPases associated with a variety of cellular activities Tlie_0283 SM00448 cheY-homologous receiver domain Tlie_0284 SM00387 Histidine kinase-like ATPases Tlie_0284 SM00388 His Kinase A (phosphoacceptor) domain Tlie_0287 SM00966 SpoVT / AbrB like domain Tlie_0289 SM00450 Rhodanese Homology Domain Tlie_0291 SM01018 B12 binding domain Tlie_0294 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Tlie_0294 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Tlie_0315 SM00387 Histidine kinase-like ATPases Tlie_0315 SM00433 TopoisomeraseII Tlie_0328 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tlie_0334 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tlie_0341 SM01321 Tlie_0341 Tlie_0348 SM00382 ATPases associated with a variety of cellular activities Tlie_0349 SM00382 ATPases associated with a variety of cellular activities Tlie_0353 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tlie_0353 SM00481 DNA polymerase alpha chain like domain Tlie_0353 SM00483 DNA polymerase X family Tlie_0357 SM00267 diguanylate cyclase Tlie_0362 SM00267 diguanylate cyclase Tlie_0365 SM00028 Tetratricopeptide repeats Tlie_0373 SM01221 Tlie_0373 Tlie_0373 SM01222 Tlie_0373 Tlie_0374 SM00346 helix_turn_helix isocitrate lyase regulation Tlie_0393 SM00434 DNA Topoisomerase IV Tlie_0417 SM00946 Prolyl-tRNA synthetase, C-terminal Tlie_0418 SM00506 Appr-1"-p processing enzyme Tlie_0419 SM01133 Tlie_0419 Tlie_0422 SM00481 DNA polymerase alpha chain like domain Tlie_0425 SM00646 Tlie_0425 Tlie_0426 SM00909 Sporulation and spore germination Tlie_0433 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_0433 SM00924 MgtE intracellular N domain Tlie_0440 SM00382 ATPases associated with a variety of cellular activities Tlie_0445 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Tlie_0445 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tlie_0446 SM00649 Ribosomal protein L11/L12 Tlie_0463 SM00487 DEAD-like helicases superfamily Tlie_0463 SM00490 helicase superfamily c-terminal domain Tlie_0465 SM00382 ATPases associated with a variety of cellular activities Tlie_0484 SM00382 ATPases associated with a variety of cellular activities Tlie_0487 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tlie_0489 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_0494 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tlie_0494 SM00387 Histidine kinase-like ATPases Tlie_0495 SM00421 helix_turn_helix, Lux Regulon Tlie_0495 SM00448 cheY-homologous receiver domain Tlie_0502 SM00382 ATPases associated with a variety of cellular activities Tlie_0516 SM00881 CoA binding domain Tlie_0528 SM00382 ATPases associated with a variety of cellular activities Tlie_0531 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Tlie_0531 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Tlie_0531 SM00493 Tlie_0531 Tlie_0535 SM00382 ATPases associated with a variety of cellular activities Tlie_0535 SM01086 C-terminal, D2-small domain, of ClpB protein Tlie_0537 SM00316 Ribosomal protein S1-like RNA-binding domain Tlie_0542 SM00855 Phosphoglycerate mutase family Tlie_0556 SM00382 ATPases associated with a variety of cellular activities Tlie_0560 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_0580 SM00357 Cold shock protein domain Tlie_0580 SM00382 ATPases associated with a variety of cellular activities Tlie_0580 SM00959 Rho termination factor, N-terminal domain Tlie_0581 SM00257 Lysin motif Tlie_0587 SM01209 Tlie_0587 Tlie_0592 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tlie_0594 SM00382 ATPases associated with a variety of cellular activities Tlie_0600 SM00883 Chaperonin 10 Kd subunit Tlie_0606 SM00400 zinc finger Tlie_0606 SM00493 Tlie_0606 Tlie_0608 SM00363 S4 RNA-binding domain Tlie_0609 SM01192 Tlie_0609 Tlie_0609 SM01193 Tlie_0609 Tlie_0610 SM00881 CoA binding domain Tlie_0611 SM01323 Tlie_0611 Tlie_0617 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0617 SM00954 Region found in RelA / SpoT proteins Tlie_0619 SM00849 Metallo-beta-lactamase superfamily Tlie_0620 SM00268 Actin Tlie_0628 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_0630 SM00316 Ribosomal protein S1-like RNA-binding domain Tlie_0631 SM00968 SMC proteins Flexible Hinge Domain Tlie_0639 SM00663 RNA polymerase I subunit A N-terminus Tlie_0643 SM00838 Elongation factor G C-terminus Tlie_0643 SM00889 Elongation factor G, domain IV Tlie_0645 SM01403 Tlie_0645 Tlie_0649 SM01382 Tlie_0649 Tlie_0649 SM01383 Tlie_0649 Tlie_0652 SM00322 K homology RNA-binding domain Tlie_0656 SM01374 Tlie_0656 Tlie_0657 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tlie_0670 SM00316 Ribosomal protein S1-like RNA-binding domain Tlie_0674 SM00363 S4 RNA-binding domain Tlie_0674 SM01390 Tlie_0674 Tlie_0675 SM00662 RNA polymerases D Tlie_0677 SM00382 ATPases associated with a variety of cellular activities Tlie_0678 SM00382 ATPases associated with a variety of cellular activities Tlie_0690 SM00935 Outer membrane protein (OmpH-like) Tlie_0691 SM00382 ATPases associated with a variety of cellular activities Tlie_0692 SM00382 ATPases associated with a variety of cellular activities Tlie_0699 SM00382 ATPases associated with a variety of cellular activities Tlie_0701 SM00244 prohibitin homologues Tlie_0706 SM00487 DEAD-like helicases superfamily Tlie_0706 SM00488 Tlie_0706 Tlie_0706 SM00491 Tlie_0706 Tlie_0711 SM01234 Tlie_0711 Tlie_0713 SM00393 Putative single-stranded nucleic acids-binding domain Tlie_0713 SM01245 Tlie_0713 Tlie_0714 SM00478 endonuclease III Tlie_0716 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tlie_0720 SM00387 Histidine kinase-like ATPases Tlie_0720 SM00388 His Kinase A (phosphoacceptor) domain Tlie_0721 SM00448 cheY-homologous receiver domain Tlie_0721 SM00862 Transcriptional regulatory protein, C terminal Tlie_0722 SM01387 Tlie_0722 Tlie_0723 SM00316 Ribosomal protein S1-like RNA-binding domain Tlie_0723 SM00322 K homology RNA-binding domain Tlie_0727 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tlie_0734 SM00873 B3/4 domain Tlie_0734 SM00874 tRNA synthetase B5 domain Tlie_0734 SM00896 Ferredoxin-fold anticodon binding domain Tlie_0738 SM00463 Small MutS-related domain Tlie_0738 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tlie_0738 SM00534 ATPase domain of DNA mismatch repair MUTS family Tlie_0740 SM00357 Cold shock protein domain Tlie_0746 SM00937 Tlie_0746 Tlie_0750 SM00226 Low molecular weight phosphatase family Tlie_0752 SM00382 ATPases associated with a variety of cellular activities Tlie_0753 SM00481 DNA polymerase alpha chain like domain Tlie_0757 SM00518 AP endonuclease family 2 Tlie_0768 SM01400 Tlie_0768 Tlie_0771 SM00487 DEAD-like helicases superfamily Tlie_0771 SM00490 helicase superfamily c-terminal domain Tlie_0771 SM00982 Tlie_0771 Tlie_0771 SM01058 CarD-like/TRCF domain Tlie_0776 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0778 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_0778 SM01091 Transporter associated domain Tlie_0786 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0791 SM00903 Flavin reductase like domain Tlie_0796 SM00028 Tetratricopeptide repeats Tlie_0796 SM00382 ATPases associated with a variety of cellular activities Tlie_0798 SM00091 PAS domain Tlie_0798 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0801 SM00421 helix_turn_helix, Lux Regulon Tlie_0801 SM00448 cheY-homologous receiver domain Tlie_0804 SM00849 Metallo-beta-lactamase superfamily Tlie_0804 SM01027 Beta-Casp domain Tlie_0809 SM00363 S4 RNA-binding domain Tlie_0817 SM00855 Phosphoglycerate mutase family Tlie_0819 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_0822 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tlie_0826 SM00764 Citrate lyase ligase C-terminal domain Tlie_0838 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0841 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_0841 SM00895 Tlie_0841 Tlie_0846 SM00740 Tlie_0846 Tlie_0849 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_0851 SM00852 Probable molybdopterin binding domain Tlie_0853 SM00382 ATPases associated with a variety of cellular activities Tlie_0855 SM00382 ATPases associated with a variety of cellular activities Tlie_0862 SM00965 Secretin and TonB N terminus short domain Tlie_0863 SM00841 Elongation factor P, C-terminal Tlie_0863 SM01185 Tlie_0863 Tlie_0870 SM00996 S-adenosyl-L-homocysteine hydrolase Tlie_0870 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Tlie_0872 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tlie_0873 SM00732 Likely ribonuclease with RNase H fold. Tlie_0874 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tlie_0874 SM00534 ATPase domain of DNA mismatch repair MUTS family Tlie_0875 SM00853 MutL C terminal dimerisation domain Tlie_0875 SM01340 Tlie_0875 Tlie_0878 SM00316 Ribosomal protein S1-like RNA-binding domain Tlie_0889 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Tlie_0893 SM00382 ATPases associated with a variety of cellular activities Tlie_0897 SM00840 Tlie_0897 Tlie_0898 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tlie_0898 SM00465 GIY-YIG type nucleases (URI domain) Tlie_0905 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_0917 SM00493 Tlie_0917 Tlie_0918 SM00670 Large family of predicted nucleotide-binding domains Tlie_0920 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_0920 SM01240 Tlie_0920 Tlie_0922 SM00316 Ribosomal protein S1-like RNA-binding domain Tlie_0922 SM00322 K homology RNA-binding domain Tlie_0929 SM00904 Riboflavin kinase Tlie_0935 SM00363 S4 RNA-binding domain Tlie_0942 SM00382 ATPases associated with a variety of cellular activities Tlie_0943 SM00487 DEAD-like helicases superfamily Tlie_0943 SM00490 helicase superfamily c-terminal domain Tlie_0944 SM00382 ATPases associated with a variety of cellular activities Tlie_0945 SM00967 RNA 2'-O ribose methyltransferase substrate binding Tlie_0982 SM00842 Cell division protein FtsA Tlie_0983 SM00864 Tubulin/FtsZ family, GTPase domain Tlie_0983 SM00865 Tubulin/FtsZ family, C-terminal domain Tlie_0984 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_0986 SM00852 Probable molybdopterin binding domain Tlie_0987 SM00852 Probable molybdopterin binding domain Tlie_0988 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_0990 SM00852 Probable molybdopterin binding domain Tlie_0995 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tlie_0998 SM00870 Tlie_0998 Tlie_1007 SM00382 ATPases associated with a variety of cellular activities Tlie_1009 SM00363 S4 RNA-binding domain Tlie_1010 SM00861 Transketolase, pyrimidine binding domain Tlie_1015 SM00843 Tlie_1015 Tlie_1019 SM00382 ATPases associated with a variety of cellular activities Tlie_1020 SM00382 ATPases associated with a variety of cellular activities Tlie_1031 SM00382 ATPases associated with a variety of cellular activities Tlie_1032 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tlie_1037 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1048 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tlie_1052 SM00986 Uracil DNA glycosylase superfamily Tlie_1052 SM00987 UreE urease accessory protein, C-terminal domain Tlie_1059 SM00382 ATPases associated with a variety of cellular activities Tlie_1066 SM00382 ATPases associated with a variety of cellular activities Tlie_1066 SM00464 Found in ATP-dependent protease La (LON) Tlie_1067 SM00382 ATPases associated with a variety of cellular activities Tlie_1067 SM00994 ClpX C4-type zinc finger Tlie_1067 SM01086 C-terminal, D2-small domain, of ClpB protein Tlie_1072 SM00478 endonuclease III Tlie_1072 SM00525 Tlie_1072 Tlie_1078 SM00998 Adenylosuccinate lyase C-terminus Tlie_1080 SM00382 ATPases associated with a variety of cellular activities Tlie_1080 SM00962 SRP54-type protein, GTPase domain Tlie_1080 SM00963 SRP54-type protein, helical bundle domain Tlie_1085 SM00382 ATPases associated with a variety of cellular activities Tlie_1092 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Tlie_1098 SM00358 Double-stranded RNA binding motif Tlie_1098 SM00535 Ribonuclease III family Tlie_1099 SM00825 Beta-ketoacyl synthase Tlie_1101 SM00822 Tlie_1101 Tlie_1102 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Tlie_1118 SM00650 Ribosomal RNA adenine dimethylases Tlie_1119 SM00411 bacterial (prokaryotic) histone like domain Tlie_1123 SM01409 Tlie_1123 Tlie_1124 SM00072 Guanylate kinase homologues. Tlie_1127 SM00563 Phosphate acyltransferases Tlie_1129 SM00363 S4 RNA-binding domain Tlie_1142 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1143 SM00838 Elongation factor G C-terminus Tlie_1146 SM01211 Tlie_1146 Tlie_1151 SM00798 AICARFT/IMPCHase bienzyme Tlie_1151 SM00851 MGS-like domain Tlie_1152 SM01209 Tlie_1152 Tlie_1152 SM01210 Tlie_1152 Tlie_1153 SM01001 AIR carboxylase Tlie_1154 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1172 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_1177 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Tlie_1195 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1197 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Tlie_1197 SM00475 5'-3' exonuclease Tlie_1197 SM00482 DNA polymerase A domain Tlie_1226 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_1231 SM00919 Malic enzyme, NAD binding domain Tlie_1231 SM01274 Tlie_1231 Tlie_1239 SM00421 helix_turn_helix, Lux Regulon Tlie_1242 SM00382 ATPases associated with a variety of cellular activities Tlie_1248 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tlie_1249 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Tlie_1250 SM00838 Elongation factor G C-terminus Tlie_1250 SM00889 Elongation factor G, domain IV Tlie_1251 SM00845 GatB domain Tlie_1254 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tlie_1254 SM00292 breast cancer carboxy-terminal domain Tlie_1254 SM00532 Ligase N family Tlie_1259 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tlie_1260 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1262 SM00851 MGS-like domain Tlie_1262 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tlie_1262 SM01209 Tlie_1262 Tlie_1263 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Tlie_1269 SM00487 DEAD-like helicases superfamily Tlie_1269 SM00490 helicase superfamily c-terminal domain Tlie_1276 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_1281 SM00861 Transketolase, pyrimidine binding domain Tlie_1282 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Tlie_1282 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Tlie_1283 SM01005 Alanine racemase, C-terminal domain Tlie_1300 SM00322 K homology RNA-binding domain Tlie_1300 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tlie_1302 SM00487 DEAD-like helicases superfamily Tlie_1302 SM00490 helicase superfamily c-terminal domain Tlie_1310 SM01130 Tlie_1310 Tlie_1315 SM00822 Tlie_1315 Tlie_1317 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1317 SM00895 Tlie_1317 Tlie_1318 SM01230 Tlie_1318 Tlie_1327 SM00836 DALR anticodon binding domain Tlie_1327 SM01016 Arginyl tRNA synthetase N terminal dom Tlie_1329 SM00957 SecA DEAD-like domain Tlie_1329 SM00958 SecA preprotein cross-linking domain Tlie_1332 SM00382 ATPases associated with a variety of cellular activities Tlie_1333 SM00382 ATPases associated with a variety of cellular activities Tlie_1346 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1349 SM00271 DnaJ molecular chaperone homology domain Tlie_1354 SM00855 Phosphoglycerate mutase family Tlie_1366 SM00788 Adenylosuccinate synthetase Tlie_1368 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tlie_1368 SM00245 tail specific protease Tlie_1371 SM00382 ATPases associated with a variety of cellular activities Tlie_1372 SM00861 Transketolase, pyrimidine binding domain Tlie_1381 SM00849 Metallo-beta-lactamase superfamily Tlie_1397 SM01007 Class II Aldolase and Adducin N-terminal domain Tlie_1401 SM00382 ATPases associated with a variety of cellular activities Tlie_1401 SM01086 C-terminal, D2-small domain, of ClpB protein Tlie_1405 SM01207 Tlie_1405 Tlie_1406 SM00881 CoA binding domain Tlie_1425 SM00382 ATPases associated with a variety of cellular activities Tlie_1425 SM00962 SRP54-type protein, GTPase domain Tlie_1425 SM00963 SRP54-type protein, helical bundle domain Tlie_1431 SM00870 Tlie_1431 Tlie_1435 SM00529 Helix-turn-helix diphteria tox regulatory element Tlie_1437 SM00530 Helix-turn-helix XRE-family like proteins Tlie_1438 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1441 SM00849 Metallo-beta-lactamase superfamily Tlie_1446 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_1447 SM00116 Domain in cystathionine beta-synthase and other proteins. Tlie_1450 SM00346 helix_turn_helix isocitrate lyase regulation Tlie_1462 SM00421 helix_turn_helix, Lux Regulon Tlie_1462 SM00448 cheY-homologous receiver domain Tlie_1463 SM00387 Histidine kinase-like ATPases Tlie_1464 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Tlie_1464 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tlie_1465 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tlie_1470 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tlie_1477 SM00861 Transketolase, pyrimidine binding domain Tlie_1485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tlie_1485 SM00387 Histidine kinase-like ATPases Tlie_1485 SM00388 His Kinase A (phosphoacceptor) domain Tlie_1486 SM00448 cheY-homologous receiver domain Tlie_1486 SM00862 Transcriptional regulatory protein, C terminal Tlie_1489 SM00487 DEAD-like helicases superfamily Tlie_1489 SM00490 helicase superfamily c-terminal domain Tlie_1500 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1500 SM00895 Tlie_1500 Tlie_1508 SM00344 helix_turn_helix ASNC type Tlie_1510 SM00014 Acid phosphatase homologues Tlie_1516 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1516 SM00895 Tlie_1516 Tlie_1519 SM00382 ATPases associated with a variety of cellular activities Tlie_1545 SM00899 Tlie_1545 Tlie_1547 SM00382 ATPases associated with a variety of cellular activities Tlie_1551 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_1553 SM00354 helix_turn _helix lactose operon repressor Tlie_1554 SM00382 ATPases associated with a variety of cellular activities Tlie_1555 SM00450 Rhodanese Homology Domain Tlie_1557 SM00382 ATPases associated with a variety of cellular activities Tlie_1560 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1560 SM00895 Tlie_1560 Tlie_1566 SM01329 Tlie_1566 Tlie_1570 SM00487 DEAD-like helicases superfamily Tlie_1570 SM00490 helicase superfamily c-terminal domain Tlie_1576 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1576 SM00895 Tlie_1576 Tlie_1591 SM00893 Electron transfer flavoprotein domain Tlie_1592 SM00893 Electron transfer flavoprotein domain Tlie_1593 SM00838 Elongation factor G C-terminus Tlie_1594 SM00091 PAS domain Tlie_1594 SM00267 diguanylate cyclase Tlie_1599 SM00382 ATPases associated with a variety of cellular activities Tlie_1599 SM01086 C-terminal, D2-small domain, of ClpB protein Tlie_1600 SM00271 DnaJ molecular chaperone homology domain Tlie_1612 SM00271 DnaJ molecular chaperone homology domain Tlie_1617 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Tlie_1617 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tlie_1618 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tlie_1620 SM00387 Histidine kinase-like ATPases Tlie_1624 SM00481 DNA polymerase alpha chain like domain Tlie_1638 SM00382 ATPases associated with a variety of cellular activities Tlie_1644 SM00382 ATPases associated with a variety of cellular activities Tlie_1654 SM00487 DEAD-like helicases superfamily Tlie_1654 SM00490 helicase superfamily c-terminal domain Tlie_1656 SM00450 Rhodanese Homology Domain Tlie_1663 SM00155 Phospholipase D. Active site motifs. Tlie_1670 SM00411 bacterial (prokaryotic) histone like domain Tlie_1673 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1673 SM00895 Tlie_1673 Tlie_1678 SM01329 Tlie_1678 Tlie_1682 SM00357 Cold shock protein domain Tlie_1684 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Tlie_1684 SM00091 PAS domain Tlie_1714 SM00091 PAS domain Tlie_1714 SM00387 Histidine kinase-like ATPases Tlie_1715 SM00448 cheY-homologous receiver domain Tlie_1720 SM00347 helix_turn_helix multiple antibiotic resistance protein Tlie_1725 SM00382 ATPases associated with a variety of cellular activities Tlie_1740 SM00382 ATPases associated with a variety of cellular activities Tlie_1747 SM00382 ATPases associated with a variety of cellular activities Tlie_1749 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1749 SM00895 Tlie_1749 Tlie_1750 SM00382 ATPases associated with a variety of cellular activities Tlie_1753 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tlie_1753 SM00267 diguanylate cyclase Tlie_1766 SM00387 Histidine kinase-like ATPases Tlie_1766 SM00388 His Kinase A (phosphoacceptor) domain Tlie_1767 SM00448 cheY-homologous receiver domain Tlie_1776 SM00226 Low molecular weight phosphatase family Tlie_1777 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tlie_1780 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_1794 SM00382 ATPases associated with a variety of cellular activities Tlie_1797 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Tlie_1800 SM00382 ATPases associated with a variety of cellular activities Tlie_1826 SM00984 UDP binding domain Tlie_1838 SM00830 Chorismate mutase type II Tlie_1846 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tlie_1846 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tlie_1847 SM00062 Bacterial periplasmic substrate-binding proteins Tlie_1847 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Tlie_1854 SM00091 PAS domain Tlie_1854 SM00267 diguanylate cyclase Tlie_1854 SM00448 cheY-homologous receiver domain Tlie_1855 SM00267 diguanylate cyclase Tlie_1856 SM00873 B3/4 domain Tlie_1859 SM00919 Malic enzyme, NAD binding domain Tlie_1859 SM01274 Tlie_1859 Tlie_1861 SM01001 AIR carboxylase Tlie_1865 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tlie_1875 SM00470 ParB-like nuclease domain Tlie_1879 SM00318 Staphylococcal nuclease homologues Tlie_1888 SM00448 cheY-homologous receiver domain Tlie_1909 SM00028 Tetratricopeptide repeats Tlie_1912 SM00729 Elongator protein 3, MiaB family, Radical SAM Tlie_1914 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain