locus-tag	class	description
TthAA229_00010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
TthAA229_00020	COG0592	DNA-directed DNA polymerase activity
TthAA229_00030	COG0148	phosphopyruvate hydratase activity
TthAA229_00040	COG0469	pyruvate kinase activity
TthAA229_00060	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TthAA229_00070	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
TthAA229_00090	COG1842	Phage shock protein A
TthAA229_00130	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
TthAA229_00140	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TthAA229_00160	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
TthAA229_00170	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
TthAA229_00190	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
TthAA229_00200	COG1278	Cold shock
TthAA229_00210	COG1653	transport
TthAA229_00240	COG0033	Phosphoglucomutase
TthAA229_00260	COG0477	Major facilitator Superfamily
TthAA229_00280	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
TthAA229_00280	COG0517	IMP dehydrogenase activity
TthAA229_00290	COG1950	PFAM Membrane protein of
TthAA229_00300	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
TthAA229_00310	COG1047	Peptidyl-prolyl cis-trans
TthAA229_00320	COG0181	hydroxymethylbilane synthase activity
TthAA229_00340	COG0285	dihydrofolate synthase activity
TthAA229_00350	COG0436	Aminotransferase
TthAA229_00360	COG0521	Mo-molybdopterin cofactor biosynthetic process
TthAA229_00410	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
TthAA229_00420	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
TthAA229_00430	COG1993	acr, cog1993
TthAA229_00440	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
TthAA229_00460	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
TthAA229_00480	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
TthAA229_00490	COG1335	isochorismatase
TthAA229_00500	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
TthAA229_00530	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
TthAA229_00540	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
TthAA229_00560	COG0242	peptide deformylase activity
TthAA229_00570	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
TthAA229_00580	COG1660	Displays ATPase and GTPase activities
TthAA229_00590	COG0391	Required for morphogenesis under gluconeogenic growth conditions
TthAA229_00680	COG3335	DDE superfamily endonuclease
TthAA229_00700	COG1845	cytochrome c oxidase, subunit III
TthAA229_00700	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
TthAA229_00720	COG0109	protoheme IX farnesyltransferase activity
TthAA229_00720	COG1612	heme a metabolic process
TthAA229_00750	COG0343	queuine tRNA-ribosyltransferase activity
TthAA229_00760	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
TthAA229_00770	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
TthAA229_00900	COG1940	carbohydrate kinase activity
TthAA229_00920	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TthAA229_00930	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TthAA229_00940	COG0589	response to stress
TthAA229_00950	COG1611	Belongs to the LOG family
TthAA229_00970	COG1011	Hydrolase
TthAA229_00980	COG0632	four-way junction helicase activity
TthAA229_00990	COG1024	Enoyl-CoA hydratase
TthAA229_01010	COG0508	dehydrogenase complex catalyzes the overall conversion of
TthAA229_01030	COG0137	argininosuccinate synthase activity
TthAA229_01040	COG0165	Argininosuccinate lyase
TthAA229_01080	COG0505	Belongs to the CarA family
TthAA229_01100	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
TthAA229_01110	COG0166	Belongs to the GPI family
TthAA229_01130	COG0714	Associated with various cellular activities
TthAA229_01160	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TthAA229_01170	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
TthAA229_01180	COG0459	protein refolding
TthAA229_01190	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
TthAA229_01200	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
TthAA229_01220	COG0778	Nitroreductase
TthAA229_01230	COG1388	LysM domain
TthAA229_01230	COG0791	NLP P60 protein
TthAA229_01250	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
TthAA229_01270	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TthAA229_01280	COG0581	inorganic phosphate transmembrane transporter activity
TthAA229_01290	COG0573	inorganic phosphate transmembrane transporter activity
TthAA229_01310	COG0482	sulfurtransferase activity
TthAA229_01330	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
TthAA229_01340	COG0735	belongs to the Fur family
TthAA229_01370	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
TthAA229_01380	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TthAA229_01390	COG0267	Belongs to the bacterial ribosomal protein bL33 family
TthAA229_01400	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TthAA229_01410	COG0250	Participates in transcription elongation, termination and antitermination
TthAA229_01420	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
TthAA229_01430	COG0081	regulation of translation
TthAA229_01440	COG0360	Binds together with S18 to 16S ribosomal RNA
TthAA229_01450	COG0629	single-stranded DNA binding
TthAA229_01460	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
TthAA229_01470	COG0359	binds to the 23S rRNA
TthAA229_01510	COG0300	oxidoreductase activity
TthAA229_01520	COG0321	lipoyl(octanoyl) transferase activity
TthAA229_01530	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
TthAA229_01580	COG1476	TRANSCRIPTIONal
TthAA229_01620	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
TthAA229_01650	COG1598	PFAM Uncharacterised protein family UPF0150
TthAA229_01660	COG0022	dehydrogenase e1 component
TthAA229_01670	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
TthAA229_01680	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
TthAA229_01730	COG2226	methyltransferase
TthAA229_01740	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
TthAA229_01770	COG1187	pseudouridine synthase activity
TthAA229_01790	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
TthAA229_01800	COG0686	Belongs to the AlaDH PNT family
TthAA229_01820	COG1461	Dihydroxyacetone kinase
TthAA229_01850	COG4591	ABC-type transport system involved in lipoprotein release permease component
TthAA229_01860	COG0222	ribosome binding
TthAA229_01870	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
TthAA229_01880	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
TthAA229_01890	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
TthAA229_01900	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
TthAA229_01920	COG0697	spore germination
TthAA229_01950	COG3177	Filamentation induced by cAMP protein fic
TthAA229_01970	COG0243	molybdopterin cofactor binding
TthAA229_01990	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
TthAA229_02010	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
TthAA229_02040	COG0477	Major facilitator Superfamily
TthAA229_02070	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
TthAA229_02090	COG0105	UTP biosynthetic process
TthAA229_02100	COG0631	protein serine/threonine phosphatase activity
TthAA229_02110	COG0583	DNA-binding transcription factor activity
TthAA229_02130	COG0508	dehydrogenase complex catalyzes the overall conversion of
TthAA229_02190	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
TthAA229_02210	COG1278	Cold shock
TthAA229_02220	COG0484	heat shock protein binding
TthAA229_02230	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
TthAA229_02240	COG1968	undecaprenyl-diphosphatase activity
TthAA229_02250	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
TthAA229_02260	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
TthAA229_02290	COG1309	transcriptional regulator
TthAA229_02300	COG4242	Belongs to the peptidase S51 family
TthAA229_02330	COG0802	atpase or kinase
TthAA229_02340	COG0539	negative regulation of cytoplasmic translation
TthAA229_02350	COG0495	leucyl-tRNA aminoacylation
TthAA229_02390	COG1902	pentaerythritol trinitrate reductase activity
TthAA229_02440	COG2414	aldehyde ferredoxin oxidoreductase
TthAA229_02460	COG4968	Prepilin-type N-terminal cleavage methylation domain
TthAA229_02480	COG2165	general secretion pathway protein
TthAA229_02540	COG1459	type II secretion system
TthAA229_02560	COG1187	pseudouridine synthase activity
TthAA229_02580	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
TthAA229_02590	COG0745	RESPONSE REGULATOR receiver
TthAA229_02600	COG4191	Histidine kinase
TthAA229_02610	COG0704	Plays a role in the regulation of phosphate uptake
TthAA229_02620	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
TthAA229_02640	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
TthAA229_02660	COG0515	serine threonine protein kinase
TthAA229_02660	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TthAA229_02720	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
TthAA229_02730	COG4221	oxidoreductase activity
TthAA229_02760	COG0717	Belongs to the dCTP deaminase family
TthAA229_02770	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
TthAA229_02780	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
TthAA229_02790	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TthAA229_02830	COG0583	DNA-binding transcription factor activity
TthAA229_02840	COG3546	catalase activity
TthAA229_02850	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TthAA229_02850	COG0758	DNA mediated transformation
TthAA229_02860	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
TthAA229_02880	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
TthAA229_02900	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
TthAA229_02920	COG0442	prolyl-tRNA aminoacylation
TthAA229_02930	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
TthAA229_02970	COG0303	'Molybdopterin
TthAA229_02980	COG0513	Belongs to the DEAD box helicase family
TthAA229_02990	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
TthAA229_03010	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
TthAA229_03050	COG2070	2-Nitropropane dioxygenase
TthAA229_03080	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
TthAA229_03100	COG0018	arginyl-trna synthetase
TthAA229_03110	COG1007	ATP synthesis coupled electron transport
TthAA229_03120	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TthAA229_03130	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
TthAA229_03140	COG0713	ATP synthesis coupled electron transport
TthAA229_03150	COG0839	Belongs to the complex I subunit 6 family
TthAA229_03160	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TthAA229_03170	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
TthAA229_03180	COG1034	ATP synthesis coupled electron transport
TthAA229_03190	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
TthAA229_03200	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TthAA229_03210	COG0649	NAD binding
TthAA229_03220	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TthAA229_03230	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TthAA229_03240	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TthAA229_03250	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
TthAA229_03270	COG4712	double-strand break repair protein
TthAA229_03360	COG0135	phosphoribosylanthranilate isomerase activity
TthAA229_03380	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
TthAA229_03400	COG2720	vancomycin resistance protein
TthAA229_03470	COG0277	FAD linked oxidase domain protein
TthAA229_03500	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
TthAA229_03510	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
TthAA229_03540	COG0314	molybdopterin synthase activity
TthAA229_03550	COG1420	regulation of RNA biosynthetic process
TthAA229_03560	COG0347	Belongs to the P(II) protein family
TthAA229_03570	COG0004	ammonium transporteR
TthAA229_03590	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
TthAA229_03610	COG0123	including yeast histone deacetylase and acetoin utilization protein
TthAA229_03640	COG1597	lipid kinase activity
TthAA229_03670	COG0475	glutathione-regulated potassium exporter activity
TthAA229_03670	COG0569	domain protein
TthAA229_03690	COG0227	Belongs to the bacterial ribosomal protein bL28 family
TthAA229_03710	COG0277	FAD linked oxidase domain protein
TthAA229_03760	COG0667	Aldo Keto reductase
TthAA229_03820	COG1067	ATP-dependent peptidase activity
TthAA229_03830	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
TthAA229_03850	COG0745	RESPONSE REGULATOR receiver
TthAA229_03860	COG2105	PFAM AIG2 family protein
TthAA229_03870	COG0297	glycogen (starch) synthase activity
TthAA229_03890	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
TthAA229_03900	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
TthAA229_03930	COG0142	geranyltranstransferase activity
TthAA229_03950	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
TthAA229_03960	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_03970	COG0492	ferredoxin-NADP+ reductase activity
TthAA229_03990	COG0792	nuclease activity
TthAA229_04000	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
TthAA229_04030	COG1175	transmembrane transport
TthAA229_04040	COG0395	ABC-type sugar transport system, permease component
TthAA229_04100	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
TthAA229_04110	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
TthAA229_04120	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
TthAA229_04130	COG0805	protein transport
TthAA229_04140	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
TthAA229_04140	COG1605	Chorismate mutase
TthAA229_04200	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_04260	COG1063	alcohol dehydrogenase
TthAA229_04320	COG2255	four-way junction helicase activity
TthAA229_04330	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
TthAA229_04340	COG0564	pseudouridine synthase activity
TthAA229_04370	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
TthAA229_04380	COG0232	Belongs to the dGTPase family. Type 2 subfamily
TthAA229_04390	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
TthAA229_04400	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TthAA229_04420	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
TthAA229_04430	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
TthAA229_04440	COG0333	Belongs to the bacterial ribosomal protein bL32 family
TthAA229_04510	COG0778	Nitroreductase
TthAA229_04540	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
TthAA229_04550	COG0131	Imidazoleglycerol-phosphate dehydratase
TthAA229_04560	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
TthAA229_04570	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
TthAA229_04580	COG0516	GMP reductase activity
TthAA229_04580	COG0517	IMP dehydrogenase activity
TthAA229_04610	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
TthAA229_04620	COG1914	H( )-stimulated, divalent metal cation uptake system
TthAA229_04650	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
TthAA229_04690	COG0706	membrane insertase activity
TthAA229_04700	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
TthAA229_04710	COG0594	ribonuclease P activity
TthAA229_04730	COG1022	Amp-dependent synthetase and ligase
TthAA229_04740	COG0559	Belongs to the binding-protein-dependent transport system permease family
TthAA229_04780	COG1121	(ABC) transporter
TthAA229_04790	COG1108	ABC-type Mn2 Zn2 transport systems permease components
TthAA229_04800	COG1959	2 iron, 2 sulfur cluster binding
TthAA229_04810	COG1104	cysteine desulfurase activity
TthAA229_04820	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
TthAA229_04830	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
TthAA229_04860	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_04900	COG0492	ferredoxin-NADP+ reductase activity
TthAA229_04930	COG0747	negative chemotaxis
TthAA229_04940	COG0601	transmembrane transport
TthAA229_04950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TthAA229_04980	COG0517	IMP dehydrogenase activity
TthAA229_04990	COG0123	including yeast histone deacetylase and acetoin utilization protein
TthAA229_05000	COG2104	thiamine diphosphate biosynthetic process
TthAA229_05010	COG0037	tRNA processing
TthAA229_05040	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
TthAA229_05090	COG4176	ABC-type proline glycine betaine transport system permease component
TthAA229_05100	COG3448	diguanylate cyclase activity
TthAA229_05100	COG4175	Glycine betaine
TthAA229_05110	COG0366	Alpha amylase catalytic
TthAA229_05120	COG2226	methyltransferase
TthAA229_05130	COG2226	methyltransferase
TthAA229_05140	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TthAA229_05160	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
TthAA229_05170	COG0460	homoserine dehydrogenase
TthAA229_05190	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
TthAA229_05260	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TthAA229_05300	COG0247	lactate metabolic process
TthAA229_05310	COG0277	FAD linked oxidase domain protein
TthAA229_05320	COG0277	FAD linked oxidase domain protein
TthAA229_05340	COG1414	Transcriptional regulator
TthAA229_05350	COG0789	Transcriptional regulator
TthAA229_05360	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TthAA229_05370	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TthAA229_05380	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
TthAA229_05450	COG0861	Integral membrane protein TerC family
TthAA229_05460	COG2151	metal-sulfur cluster biosynthetic enzyme
TthAA229_05470	COG0281	malic enzyme
TthAA229_05500	COG0404	The glycine cleavage system catalyzes the degradation of glycine
TthAA229_05510	COG0509	glycine decarboxylation via glycine cleavage system
TthAA229_05520	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
TthAA229_05530	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
TthAA229_05540	COG0196	riboflavin kinase activity
TthAA229_05550	COG0494	nUDIX hydrolase
TthAA229_05590	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TthAA229_05600	COG2813	Specifically methylates the guanine in position
TthAA229_05610	COG0527	aspartate kinase activity
TthAA229_05630	COG0039	L-malate dehydrogenase activity
TthAA229_05670	COG4956	integral membrane protein (PIN domain superfamily)
TthAA229_05680	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
TthAA229_05690	COG0542	response to heat
TthAA229_05700	COG0423	glycine-tRNA ligase activity
TthAA229_05720	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
TthAA229_05760	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
TthAA229_05760	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TthAA229_05780	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
TthAA229_05790	COG0291	Belongs to the bacterial ribosomal protein bL35 family
TthAA229_05800	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
TthAA229_05820	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TthAA229_05830	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
TthAA229_05840	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
TthAA229_05850	COG0114	fumarate hydratase activity
TthAA229_05860	COG0183	Belongs to the thiolase family
TthAA229_05890	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TthAA229_05900	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
TthAA229_05930	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
TthAA229_05940	COG1254	Belongs to the acylphosphatase family
TthAA229_05970	COG1063	alcohol dehydrogenase
TthAA229_05990	COG2133	pyrroloquinoline quinone binding
TthAA229_06010	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
TthAA229_06020	COG0154	amidase activity
TthAA229_06070	COG0572	uridine kinase
TthAA229_06080	COG3842	ATPase activity
TthAA229_06110	COG4475	Protein of unknown function (DUF436)
TthAA229_06150	COG1595	DNA-templated transcription, initiation
TthAA229_06230	COG0410	ABC transporter
TthAA229_06250	COG0683	leucine binding
TthAA229_06300	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
TthAA229_06310	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
TthAA229_06320	COG0803	Belongs to the bacterial solute-binding protein 9 family
TthAA229_06360	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
TthAA229_06370	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
TthAA229_06380	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
TthAA229_06400	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_06410	COG0318	PFAM AMP-dependent synthetase and ligase
TthAA229_06420	COG2030	dehydratase
TthAA229_06420	COG1012	belongs to the aldehyde dehydrogenase family
TthAA229_06430	COG1960	acyl-CoA dehydrogenase activity
TthAA229_06460	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
TthAA229_06480	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
TthAA229_06500	COG3870	Protein conserved in bacteria
TthAA229_06510	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
TthAA229_06530	COG0544	peptidyl-prolyl cis-trans isomerase activity
TthAA229_06540	COG0740	serine-type endopeptidase activity
TthAA229_06550	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
TthAA229_06560	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
TthAA229_06570	COG0646	methionine synthase
TthAA229_06570	COG1410	methionine synthase
TthAA229_06580	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
TthAA229_06600	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
TthAA229_06630	COG1692	metallophosphoesterase
TthAA229_06640	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
TthAA229_06670	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
TthAA229_06680	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
TthAA229_06810	COG0438	transferase activity, transferring glycosyl groups
TthAA229_06860	COG0529	Catalyzes the synthesis of activated sulfate
TthAA229_06870	COG2046	Belongs to the sulfate adenylyltransferase family
TthAA229_06900	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
TthAA229_06940	COG0489	protein tyrosine kinase activity
TthAA229_06960	COG2264	protein methyltransferase activity
TthAA229_06970	COG1385	rRNA (uridine-N3-)-methyltransferase activity
TthAA229_07030	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TthAA229_07030	COG0574	Belongs to the PEP-utilizing enzyme family
TthAA229_07050	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
TthAA229_07060	COG2046	Belongs to the sulfate adenylyltransferase family
TthAA229_07070	COG1648	precorrin-2 dehydrogenase activity
TthAA229_07070	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
TthAA229_07080	COG0730	response to heat
TthAA229_07090	COG0175	sulfate reduction
TthAA229_07100	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
TthAA229_07100	COG1648	precorrin-2 dehydrogenase activity
TthAA229_07110	COG1587	Uroporphyrinogen-III synthase
TthAA229_07120	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TthAA229_07140	COG0352	thiamine-phosphate diphosphorylase activity
TthAA229_07150	COG2104	thiamine diphosphate biosynthetic process
TthAA229_07160	COG2022	thiamine diphosphate biosynthetic process
TthAA229_07170	COG2022	thiamine diphosphate biosynthetic process
TthAA229_07170	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TthAA229_07180	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
TthAA229_07190	COG0477	Major facilitator Superfamily
TthAA229_07200	COG0352	thiamine-phosphate diphosphorylase activity
TthAA229_07200	COG0351	phosphomethylpyrimidine kinase
TthAA229_07280	COG1940	carbohydrate kinase activity
TthAA229_07290	COG0183	Belongs to the thiolase family
TthAA229_07320	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_07330	COG0410	ABC transporter
TthAA229_07360	COG0559	Belongs to the binding-protein-dependent transport system permease family
TthAA229_07390	COG2030	dehydratase
TthAA229_07410	COG0596	Alpha beta hydrolase
TthAA229_07420	COG0318	PFAM AMP-dependent synthetase and ligase
TthAA229_07450	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TthAA229_07450	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TthAA229_07470	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
TthAA229_07490	COG0195	Participates in both transcription termination and antitermination
TthAA229_07500	COG0779	Required for maturation of 30S ribosomal subunits
TthAA229_07510	COG0739	heme binding
TthAA229_07520	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
TthAA229_07530	COG0640	Transcriptional regulator
TthAA229_07540	COG2217	Heavy metal translocating P-type atpase
TthAA229_07550	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
TthAA229_07560	COG0017	Asparaginyl-tRNA synthetase
TthAA229_07570	COG0561	phosphatase activity
TthAA229_07580	COG0384	phenazine biosynthesis protein PhzF
TthAA229_07590	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
TthAA229_07600	COG0124	histidyl-tRNA synthetase
TthAA229_07620	COG3842	ATPase activity
TthAA229_07660	COG1573	uracil-dna glycosylase
TthAA229_07700	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
TthAA229_07710	COG0519	Catalyzes the synthesis of GMP from XMP
TthAA229_07710	COG0518	GMP synthase (glutamine-hydrolyzing) activity
TthAA229_07730	COG1316	TRANSCRIPTIONal
TthAA229_07740	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
TthAA229_07830	COG0295	cytidine deaminase activity
TthAA229_07870	COG1760	l-serine dehydratase
TthAA229_07890	COG0481	GTPase activity
TthAA229_07910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
TthAA229_07920	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
TthAA229_07940	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_07990	COG0405	Gamma-glutamyltransferase
TthAA229_08010	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
TthAA229_08020	COG2873	o-acetylhomoserine
TthAA229_08050	COG1063	alcohol dehydrogenase
TthAA229_08070	COG3191	aminopeptidase activity
TthAA229_08080	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
TthAA229_08100	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TthAA229_08110	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
TthAA229_08120	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TthAA229_08130	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TthAA229_08140	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
TthAA229_08150	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TthAA229_08170	COG0167	dihydroorotate dehydrogenase activity
TthAA229_08250	COG0730	response to heat
TthAA229_08260	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TthAA229_08300	COG1960	acyl-CoA dehydrogenase activity
TthAA229_08310	COG0456	acetyltransferase
TthAA229_08330	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
TthAA229_08340	COG0009	L-threonylcarbamoyladenylate synthase
TthAA229_08380	COG0277	FAD linked oxidase domain protein
TthAA229_08400	COG0287	Prephenate dehydrogenase
TthAA229_08410	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
TthAA229_08420	COG2514	catechol 2,3-dioxygenase activity
TthAA229_08430	COG2353	YceI-like domain
TthAA229_08440	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
TthAA229_08450	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
TthAA229_08490	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TthAA229_08500	COG0179	Fumarylacetoacetate (FAA) hydrolase
TthAA229_08520	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
TthAA229_08530	COG0151	Belongs to the GarS family
TthAA229_08540	COG2176	DNA-directed DNA polymerase activity
TthAA229_08540	COG5002	protein histidine kinase activity
TthAA229_08600	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
TthAA229_08620	COG0217	transcriptional regulatory protein
TthAA229_08630	COG4651	solute:proton antiporter activity
TthAA229_08630	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
TthAA229_08640	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
TthAA229_08650	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
TthAA229_08660	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
TthAA229_08670	COG1674	ftsk spoiiie
TthAA229_08700	COG0517	IMP dehydrogenase activity
TthAA229_08740	COG1994	Peptidase M50
TthAA229_08750	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
TthAA229_08770	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
TthAA229_08800	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
TthAA229_08810	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
TthAA229_08820	COG2719	SpoVR family
TthAA229_08830	COG2718	Belongs to the UPF0229 family
TthAA229_08840	COG2766	serine protein kinase
TthAA229_08890	COG2137	regulation of response to DNA damage stimulus
TthAA229_08910	COG2359	stage V sporulation protein S
TthAA229_08920	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
TthAA229_08930	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
TthAA229_08950	COG0463	Glycosyl transferase, family 2
TthAA229_08960	COG0750	zinc metalloprotease
TthAA229_08970	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
TthAA229_08980	COG0575	Belongs to the CDS family
TthAA229_08990	COG0233	cytoplasmic translational termination
TthAA229_09000	COG0528	UMP kinase activity
TthAA229_09010	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
TthAA229_09020	COG0052	Belongs to the universal ribosomal protein uS2 family
TthAA229_09040	COG0494	nUDIX hydrolase
TthAA229_09100	COG0402	S-adenosylhomocysteine deaminase activity
TthAA229_09120	COG4948	Mandelate Racemase Muconate Lactonizing
TthAA229_09130	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
TthAA229_09140	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TthAA229_09150	COG1811	Na channel or pump
TthAA229_09160	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
TthAA229_09160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TthAA229_09190	COG1215	transferase activity, transferring glycosyl groups
TthAA229_09210	COG1215	transferase activity, transferring glycosyl groups
TthAA229_09230	COG0438	transferase activity, transferring glycosyl groups
TthAA229_09240	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
TthAA229_09270	COG1024	Enoyl-CoA hydratase
TthAA229_09270	COG1250	3-hydroxyacyl-CoA dehydrogenase
TthAA229_09280	COG0183	Belongs to the thiolase family
TthAA229_09290	COG1960	acyl-CoA dehydrogenase activity
TthAA229_09300	COG0215	cysteine-tRNA ligase activity
TthAA229_09310	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
TthAA229_09370	COG1196	nuclear chromosome segregation
TthAA229_09400	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
TthAA229_09410	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TthAA229_09410	COG3153	acetyltransferase
TthAA229_09420	COG1268	BioY protein
TthAA229_09440	COG0126	phosphoglycerate kinase activity
TthAA229_09450	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
TthAA229_09460	COG0824	Thioesterase
TthAA229_09480	COG0557	exoribonuclease II activity
TthAA229_09490	COG1355	regulation of microtubule-based process
TthAA229_09500	COG0617	tRNA 3'-terminal CCA addition
TthAA229_09510	COG0237	dephospho-CoA kinase activity
TthAA229_09520	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TthAA229_09530	COG0742	ribosomal rna small subunit methyltransferase
TthAA229_09540	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
TthAA229_09550	COG0138	bifunctional purine biosynthesis protein purh
TthAA229_09560	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
TthAA229_09590	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
TthAA229_09700	COG0149	triose-phosphate isomerase activity
TthAA229_09710	COG3239	Fatty acid desaturase
TthAA229_09740	COG1490	D-aminoacyl-tRNA deacylase activity
TthAA229_09750	COG1307	EDD domain protein, DegV family
TthAA229_09760	COG1307	EDD domain protein, DegV family
TthAA229_09770	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
TthAA229_09780	COG1510	regulation of RNA biosynthetic process
TthAA229_09820	COG1136	(ABC) transporter
TthAA229_09850	COG3769	mannosylglycerate metabolic process
TthAA229_09870	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
TthAA229_09890	COG1012	belongs to the aldehyde dehydrogenase family
TthAA229_09900	COG2368	4-hydroxyphenylacetate
TthAA229_09910	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
TthAA229_09940	COG0559	Belongs to the binding-protein-dependent transport system permease family
TthAA229_09950	COG0411	ABC transporter
TthAA229_09960	COG0410	ABC transporter
TthAA229_09970	COG2050	protein possibly involved in aromatic compounds catabolism
TthAA229_09980	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
TthAA229_10000	COG1012	belongs to the aldehyde dehydrogenase family
TthAA229_10000	COG2030	dehydratase
TthAA229_10040	COG3396	Phenylacetate-CoA oxygenase
TthAA229_10060	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
TthAA229_10120	COG1980	fructose-bisphosphate aldolase activity
TthAA229_10130	COG1733	regulation of RNA biosynthetic process
TthAA229_10140	COG2193	ferroxidase activity
TthAA229_10150	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
TthAA229_10160	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
TthAA229_10180	COG1331	Highly conserved protein containing a thioredoxin domain
TthAA229_10190	COG0183	Belongs to the thiolase family
TthAA229_10200	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
TthAA229_10210	COG0477	Major facilitator Superfamily
TthAA229_10250	COG3706	GGDEF domain
TthAA229_10300	COG1012	belongs to the aldehyde dehydrogenase family
TthAA229_10320	COG0248	Ppx GppA phosphatase
TthAA229_10330	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
TthAA229_10340	COG0210	DNA helicase
TthAA229_10370	COG1309	transcriptional regulator
TthAA229_10380	COG1131	(ABC) transporter
TthAA229_10390	COG0842	Transport permease protein
TthAA229_10450	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TthAA229_10500	COG0582	viral genome integration into host DNA
TthAA229_10510	COG2897	thiosulfate sulfurtransferase activity
TthAA229_10520	COG1760	l-serine dehydratase
TthAA229_10530	COG2197	response regulator
TthAA229_10540	COG0335	large ribosomal subunit rRNA binding
TthAA229_10550	COG0336	Belongs to the RNA methyltransferase TrmD family
TthAA229_10560	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
TthAA229_10570	COG1837	Belongs to the UPF0109 family
TthAA229_10580	COG0228	four-way junction DNA binding
TthAA229_10610	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
TthAA229_10630	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
TthAA229_10640	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
TthAA229_10650	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
TthAA229_10670	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
TthAA229_10680	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
TthAA229_10690	COG1702	phosphate starvation-inducible protein PhoH
TthAA229_10710	COG4864	UPF0365 protein
TthAA229_10730	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
TthAA229_10750	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TthAA229_10750	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TthAA229_10760	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
TthAA229_10780	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
TthAA229_10790	COG1397	ADP-ribosylglycohydrolase
TthAA229_10800	COG2239	Acts as a magnesium transporter
TthAA229_10810	COG2304	oxidoreductase activity
TthAA229_10820	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TthAA229_10820	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TthAA229_10840	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TthAA229_10840	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TthAA229_10850	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
TthAA229_10860	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
TthAA229_10870	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
TthAA229_10880	COG0006	proline dipeptidase activity
TthAA229_10900	COG0739	heme binding
TthAA229_10920	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TthAA229_10930	COG0254	rRNA binding
TthAA229_10950	COG2001	Belongs to the MraZ family
TthAA229_10960	COG0275	rRNA processing
TthAA229_10990	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
TthAA229_11010	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TthAA229_11020	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
TthAA229_11030	COG0772	Belongs to the SEDS family
TthAA229_11040	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
TthAA229_11050	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
TthAA229_11060	COG0812	UDP-N-acetylmuramate dehydrogenase activity
TthAA229_11100	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
TthAA229_11130	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
TthAA229_11150	COG0159	tryptophan synthase activity
TthAA229_11160	COG0133	tryptophan synthase activity
TthAA229_11170	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
TthAA229_11180	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TthAA229_11300	COG0438	transferase activity, transferring glycosyl groups
TthAA229_11310	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TthAA229_11330	COG0039	L-malate dehydrogenase activity
TthAA229_11340	COG2819	hydrolase of the alpha beta superfamily
TthAA229_11350	COG0861	Integral membrane protein TerC family
TthAA229_11370	COG2181	nitrate reductase activity
TthAA229_11370	COG0247	lactate metabolic process
TthAA229_11390	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
TthAA229_11400	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
TthAA229_11410	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TthAA229_11430	COG0439	Biotin carboxylase
TthAA229_11440	COG0511	ligase activity, forming carbon-carbon bonds
TthAA229_11450	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
TthAA229_11490	COG0010	Belongs to the arginase family
TthAA229_11520	COG1100	Small GTP-binding protein
TthAA229_11540	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
TthAA229_11550	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
TthAA229_11570	COG2814	Major facilitator Superfamily
TthAA229_11580	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
TthAA229_11590	COG1185	polyribonucleotide nucleotidyltransferase activity
TthAA229_11600	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
TthAA229_11610	COG0589	response to stress
TthAA229_11640	COG3335	DDE superfamily endonuclease
TthAA229_11660	COG2239	Acts as a magnesium transporter
TthAA229_11670	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
TthAA229_11680	COG0745	RESPONSE REGULATOR receiver
TthAA229_11690	COG5002	protein histidine kinase activity
TthAA229_11700	COG1960	acyl-CoA dehydrogenase activity
TthAA229_11710	COG2086	electron transfer activity
TthAA229_11720	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
TthAA229_11740	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
TthAA229_11750	COG1573	uracil-dna glycosylase
TthAA229_11760	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
TthAA229_11760	COG1796	DNA polymerase
TthAA229_11790	COG2309	aminopeptidase activity
TthAA229_11810	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
TthAA229_11870	COG2873	o-acetylhomoserine
TthAA229_11900	COG1126	abc transporter atp-binding protein
TthAA229_11930	COG0134	indole-3-glycerol-phosphate synthase activity
TthAA229_11940	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
TthAA229_11960	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
TthAA229_11980	COG0525	valine-tRNA ligase activity
TthAA229_11990	COG0765	amino acid transport
TthAA229_12000	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
TthAA229_12020	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
TthAA229_12030	COG0569	domain protein
TthAA229_12040	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TthAA229_12050	COG1426	Protein conserved in bacteria
TthAA229_12060	COG2313	pseudouridylate synthase activity
TthAA229_12090	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
TthAA229_12110	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
TthAA229_12150	COG0012	GTP binding
TthAA229_12160	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
TthAA229_12180	COG0424	maF-like protein
TthAA229_12210	COG0768	penicillin binding
TthAA229_12270	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
TthAA229_12280	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
TthAA229_12300	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
TthAA229_12340	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TthAA229_12360	COG1131	(ABC) transporter
TthAA229_12390	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TthAA229_12420	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
TthAA229_12430	COG0440	acetolactate synthase activity
TthAA229_12440	COG0028	Belongs to the TPP enzyme family
TthAA229_12450	COG0492	ferredoxin-NADP+ reductase activity
TthAA229_12530	COG4636	protein conserved in cyanobacteria
TthAA229_12600	COG0180	Tryptophanyl-tRNA synthetase
TthAA229_12610	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TthAA229_12620	COG0066	3-isopropylmalate dehydratase activity
TthAA229_12630	COG0473	3-isopropylmalate dehydrogenase activity
TthAA229_12660	COG0300	oxidoreductase activity
TthAA229_12670	COG0129	dihydroxy-acid dehydratase activity
TthAA229_12690	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
TthAA229_12700	COG1177	transmembrane transport
TthAA229_12710	COG1176	ABC-type spermidine putrescine transport system, permease component I
TthAA229_12720	COG3842	ATPase activity
TthAA229_12730	COG0772	Belongs to the SEDS family
TthAA229_12740	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
TthAA229_12750	COG2894	cell division
TthAA229_12760	COG1733	regulation of RNA biosynthetic process
TthAA229_12800	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
TthAA229_12810	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
TthAA229_12820	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
TthAA229_12830	COG0653	protein targeting
TthAA229_12840	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
TthAA229_12880	COG0393	Putative heavy-metal-binding
TthAA229_12890	COG1205	dead DEAH box helicase
TthAA229_12890	COG1111	helicase
TthAA229_12920	COG0358	DNA primase activity
TthAA229_12950	COG1250	3-hydroxyacyl-CoA dehydrogenase
TthAA229_12960	COG0697	spore germination
TthAA229_12970	COG0612	Peptidase, M16
TthAA229_12980	COG0612	Peptidase, M16
TthAA229_12990	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
TthAA229_13020	COG1394	ATPase activity, coupled to movement of substances
TthAA229_13030	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
TthAA229_13040	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
TthAA229_13050	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
TthAA229_13060	COG1527	subunit (C
TthAA229_13070	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
TthAA229_13090	COG1269	ATP hydrolysis coupled proton transport
TthAA229_13160	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TthAA229_13180	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
TthAA229_13210	COG0419	ATPase involved in DNA repair
TthAA229_13220	COG0420	3'-5' exonuclease activity
TthAA229_13260	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
TthAA229_13270	COG2884	Cell division ATP-binding protein ftsE
TthAA229_13280	COG0793	Belongs to the peptidase S41A family
TthAA229_13290	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TthAA229_13290	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TthAA229_13300	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
TthAA229_13310	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
TthAA229_13350	COG1129	ABC transporter
TthAA229_13360	COG0746	molybdenum cofactor guanylyltransferase activity
TthAA229_13380	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TthAA229_13420	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
TthAA229_13430	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TthAA229_13440	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
TthAA229_13460	COG0517	IMP dehydrogenase activity
TthAA229_13460	COG1994	Peptidase M50
TthAA229_13520	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
TthAA229_13530	COG0788	formyltetrahydrofolate deformylase activity
TthAA229_13540	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
TthAA229_13550	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
TthAA229_13560	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
TthAA229_13600	COG0737	Belongs to the 5'-nucleotidase family
TthAA229_13610	COG0174	glutamine synthetase
TthAA229_13630	COG0559	Belongs to the binding-protein-dependent transport system permease family
TthAA229_13660	COG0410	ABC transporter
TthAA229_13670	COG0747	negative chemotaxis
TthAA229_13710	COG0285	dihydrofolate synthase activity
TthAA229_13720	COG1132	(ABC) transporter
TthAA229_13730	COG1132	(ABC) transporter
TthAA229_13740	COG0372	Belongs to the citrate synthase family
TthAA229_13750	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
TthAA229_13760	COG1482	cell wall glycoprotein biosynthetic process
TthAA229_13780	COG1515	deoxyribonuclease V activity
TthAA229_13800	COG0776	regulation of translation
TthAA229_13830	COG2197	response regulator
TthAA229_13840	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
TthAA229_13850	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
TthAA229_13860	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
TthAA229_13870	COG1324	tolerance protein
TthAA229_13880	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
TthAA229_13920	COG2205	protein histidine kinase activity
TthAA229_13960	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
TthAA229_14040	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
TthAA229_14050	COG0247	lactate metabolic process
TthAA229_14060	COG1139	Iron-sulfur cluster binding protein
TthAA229_14070	COG1556	Lactate utilization protein
TthAA229_14090	COG1752	Esterase of the alpha-beta hydrolase superfamily
TthAA229_14100	COG0515	serine threonine protein kinase
TthAA229_14100	COG2815	serine threonine protein kinase
TthAA229_14110	COG0860	N-Acetylmuramoyl-L-alanine amidase
TthAA229_14130	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
TthAA229_14170	COG0473	3-isopropylmalate dehydrogenase activity
TthAA229_14220	COG1450	Type ii and iii secretion system protein
TthAA229_14230	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
TthAA229_14240	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
TthAA229_14250	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
TthAA229_14260	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
TthAA229_14260	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
TthAA229_14270	COG0736	holo-[acyl-carrier-protein] synthase activity
TthAA229_14300	COG1160	GTP binding
TthAA229_14310	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
TthAA229_14320	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
TthAA229_14320	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
TthAA229_14330	COG2814	Major facilitator Superfamily
TthAA229_14340	COG0083	homoserine kinase activity
TthAA229_14360	COG0268	Binds directly to 16S ribosomal RNA
TthAA229_14380	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
TthAA229_14390	COG0723	plastoquinol--plastocyanin reductase activity
TthAA229_14410	COG3088	subunit of a heme lyase
TthAA229_14410	COG4235	cytochrome complex assembly
TthAA229_14420	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
TthAA229_14430	COG1138	Cytochrome C-type biogenesis protein
TthAA229_14440	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
TthAA229_14450	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
TthAA229_14460	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
TthAA229_14470	COG4133	protoheme IX ABC transporter activity
TthAA229_14480	COG0785	Cytochrome C biogenesis protein
TthAA229_14490	COG3258	Cytochrome c
TthAA229_14510	COG0446	pyridine nucleotide-disulphide oxidoreductase
TthAA229_14540	COG3258	Cytochrome c
TthAA229_14550	COG2010	Cytochrome c
TthAA229_14560	COG0737	Belongs to the 5'-nucleotidase family
TthAA229_14570	COG2010	Cytochrome c
TthAA229_14580	COG3258	Cytochrome c
TthAA229_14620	COG2010	Cytochrome c
TthAA229_14630	COG3842	ATPase activity
TthAA229_14690	COG0318	PFAM AMP-dependent synthetase and ligase
TthAA229_14700	COG3360	Dodecin
TthAA229_14730	COG1024	Enoyl-CoA hydratase
TthAA229_14740	COG0813	purine-nucleoside phosphorylase activity
TthAA229_14750	COG1136	(ABC) transporter
TthAA229_14760	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
TthAA229_14770	COG2045	Belongs to the ComB family
TthAA229_14790	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
TthAA229_14810	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
TthAA229_14830	COG0107	imidazoleglycerol-phosphate synthase activity
TthAA229_14840	COG0140	phosphoribosyl-ATP diphosphatase activity
TthAA229_14840	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
TthAA229_14850	COG1494	fructose-1,6-bisphosphatase
TthAA229_14860	COG0686	Belongs to the AlaDH PNT family
TthAA229_14870	COG0427	acetyl-CoA hydrolase
TthAA229_14880	COG0084	hydrolase, TatD family'
TthAA229_14890	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
TthAA229_14910	COG0017	Asparaginyl-tRNA synthetase
TthAA229_14940	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
TthAA229_14970	COG2009	succinate dehydrogenase
TthAA229_14980	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
TthAA229_15040	COG0318	PFAM AMP-dependent synthetase and ligase
TthAA229_15050	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
TthAA229_15060	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
TthAA229_15070	COG0504	CTP synthase activity
TthAA229_15110	COG0070	glutamate synthase
TthAA229_15110	COG0069	glutamate synthase activity
TthAA229_15110	COG0067	glutamate synthase
TthAA229_15220	COG0840	transmembrane signaling receptor activity
TthAA229_15230	COG0305	Participates in initiation and elongation during chromosome replication
TthAA229_15250	COG0475	glutathione-regulated potassium exporter activity
TthAA229_15260	COG0517	IMP dehydrogenase activity
TthAA229_15260	COG1227	inorganic diphosphatase activity
TthAA229_15290	COG0475	glutathione-regulated potassium exporter activity
TthAA229_15300	COG0490	domain, Protein
TthAA229_15340	COG3118	belongs to the thioredoxin family
TthAA229_15360	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
TthAA229_15420	COG0542	response to heat
TthAA229_15430	COG0789	Transcriptional regulator
TthAA229_15440	COG0484	heat shock protein binding
TthAA229_15450	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
TthAA229_15460	COG0443	Heat shock 70 kDa protein
TthAA229_15470	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
TthAA229_15480	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
TthAA229_15490	COG0616	signal peptide processing
TthAA229_15520	COG1310	metal-dependent protease of the Pad1 Jab1 superfamily
TthAA229_15530	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TthAA229_15540	COG0714	Associated with various cellular activities
TthAA229_15550	COG0574	Belongs to the PEP-utilizing enzyme family
TthAA229_15550	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TthAA229_15570	COG3850	Histidine kinase
TthAA229_15570	COG5002	protein histidine kinase activity
TthAA229_15620	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
TthAA229_15700	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
TthAA229_15730	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
TthAA229_15750	COG0047	phosphoribosylformylglycinamidine synthase activity
TthAA229_15770	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TthAA229_15780	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
TthAA229_15790	COG0116	Belongs to the methyltransferase superfamily
TthAA229_15820	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
TthAA229_15830	COG0497	DNA recombination
TthAA229_15850	COG0604	alcohol dehydrogenase
TthAA229_15890	COG0585	pseudouridine synthase activity
TthAA229_15940	COG1595	DNA-templated transcription, initiation
TthAA229_15950	COG0557	exoribonuclease II activity
TthAA229_15960	COG0538	isocitrate dehydrogenase activity
TthAA229_15970	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TthAA229_15970	COG2022	thiamine diphosphate biosynthetic process
TthAA229_15980	COG0582	viral genome integration into host DNA
TthAA229_16060	COG0037	tRNA processing
TthAA229_16060	COG0590	tRNA wobble adenosine to inosine editing
TthAA229_16100	COG2050	protein possibly involved in aromatic compounds catabolism
TthAA229_16120	COG0322	excinuclease ABC activity
TthAA229_16130	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
TthAA229_16140	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
TthAA229_16150	COG1854	S-ribosylhomocysteine lyase activity
TthAA229_16180	COG0518	GMP synthase (glutamine-hydrolyzing) activity
TthAA229_16180	COG0519	Catalyzes the synthesis of GMP from XMP
TthAA229_16190	COG4636	protein conserved in cyanobacteria
TthAA229_16200	COG4274	PFAM GYD family protein
TthAA229_16210	COG0346	lactoylglutathione lyase activity
TthAA229_16250	COG0328	RNA-DNA hybrid ribonuclease activity
TthAA229_16260	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
TthAA229_16270	COG2095	MarC family integral membrane protein
TthAA229_16280	COG1438	arginine binding
TthAA229_16290	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
TthAA229_16300	COG1758	RNA polymerase activity
TthAA229_16310	COG0194	GDP metabolic process
TthAA229_16330	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TthAA229_16340	COG2385	sporulation resulting in formation of a cellular spore
TthAA229_16350	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
TthAA229_16370	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
TthAA229_16450	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
TthAA229_16460	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
TthAA229_16470	COG1012	belongs to the aldehyde dehydrogenase family
TthAA229_16480	COG0506	proline dehydrogenase activity
TthAA229_16510	COG0156	8-amino-7-oxononanoate synthase activity
TthAA229_16520	COG0732	type I restriction modification DNA specificity domain
TthAA229_16520	COG0827	DNA restriction-modification system
TthAA229_16540	COG0187	DNA topoisomerase II activity
TthAA229_16550	COG1181	Belongs to the D-alanine--D-alanine ligase family
TthAA229_16560	COG0193	aminoacyl-tRNA hydrolase activity
TthAA229_16570	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
TthAA229_16620	COG0515	serine threonine protein kinase
TthAA229_16620	COG2815	serine threonine protein kinase
TthAA229_16630	COG0631	protein serine/threonine phosphatase activity
TthAA229_16650	COG2814	Major facilitator Superfamily
TthAA229_16660	COG0113	porphobilinogen synthase activity
TthAA229_16670	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
TthAA229_16680	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
TthAA229_16730	COG1506	peptidase
TthAA229_16730	COG0823	Involved in the tonB-independent uptake of proteins
TthAA229_16730	COG4946	Tricorn protease homolog
TthAA229_16740	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
TthAA229_16750	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
TthAA229_16790	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
TthAA229_16800	COG1011	Hydrolase
TthAA229_16850	COG0537	adenosine 5'-monophosphoramidase activity
TthAA229_16860	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TthAA229_16870	COG0220	tRNA (guanine-N7-)-methyltransferase activity
TthAA229_16880	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
TthAA229_16890	COG0071	Belongs to the small heat shock protein (HSP20) family
TthAA229_16900	COG2897	thiosulfate sulfurtransferase activity
TthAA229_16910	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TthAA229_16930	COG1764	response to oxidative stress
TthAA229_16980	COG3842	ATPase activity
TthAA229_16990	COG0101	tRNA pseudouridine synthase activity
TthAA229_17000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TthAA229_17010	COG0601	transmembrane transport
TthAA229_17020	COG0747	negative chemotaxis
TthAA229_17050	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
TthAA229_17080	COG1166	arginine decarboxylase activity
TthAA229_17090	COG3706	GGDEF domain
TthAA229_17100	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
TthAA229_17110	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
TthAA229_17120	COG1611	Belongs to the LOG family
TthAA229_17130	COG1193	negative regulation of DNA recombination
TthAA229_17140	COG0366	Alpha amylase catalytic
TthAA229_17170	COG3833	ABC-type maltose transport systems, permease component
TthAA229_17180	COG1175	transmembrane transport
TthAA229_17210	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
TthAA229_17220	COG0142	geranyltranstransferase activity
TthAA229_17320	COG0203	ribosomal protein L17
TthAA229_17330	COG0202	RNA polymerase activity
TthAA229_17340	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
TthAA229_17350	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
TthAA229_17360	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
TthAA229_17370	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
TthAA229_17390	COG0563	adenylate kinase activity
TthAA229_17400	COG0201	protein transport
TthAA229_17410	COG0200	Binds to the 23S rRNA
TthAA229_17420	COG1841	ribosomal large subunit assembly
TthAA229_17430	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
TthAA229_17440	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
TthAA229_17450	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
TthAA229_17460	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
TthAA229_17470	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
TthAA229_17480	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
TthAA229_17490	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
TthAA229_17510	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
TthAA229_17520	COG0255	Belongs to the universal ribosomal protein uL29 family
TthAA229_17530	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
TthAA229_17540	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
TthAA229_17550	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
TthAA229_17560	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
TthAA229_17570	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
TthAA229_17580	COG0089	rRNA binding
TthAA229_17590	COG0088	Forms part of the polypeptide exit tunnel
TthAA229_17600	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
TthAA229_17610	COG0051	transcription antitermination factor activity, RNA binding
TthAA229_17620	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TthAA229_17630	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TthAA229_17640	COG0049	tRNA binding
TthAA229_17650	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
TthAA229_17670	COG0442	prolyl-tRNA aminoacylation
TthAA229_17690	COG1115	amino acid carrier protein
TthAA229_17730	COG1489	DNA binding
TthAA229_17800	COG0432	Pfam Uncharacterised protein family UPF0047
TthAA229_17820	COG0668	transmembrane transport
TthAA229_17840	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
TthAA229_17850	COG2217	Heavy metal translocating P-type atpase
TthAA229_17890	COG0745	RESPONSE REGULATOR receiver
TthAA229_17900	COG2205	protein histidine kinase activity
TthAA229_17950	COG2226	methyltransferase
TthAA229_17990	COG2132	Multicopper oxidase
TthAA229_18010	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
TthAA229_18020	COG0822	iron-sulfur transferase activity
TthAA229_18060	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
TthAA229_18080	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
TthAA229_18090	COG0284	orotidine-5'-phosphate decarboxylase activity
TthAA229_18110	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
TthAA229_18130	COG0416	fatty acid biosynthetic process
TthAA229_18140	COG3118	belongs to the thioredoxin family
TthAA229_18150	COG1185	polyribonucleotide nucleotidyltransferase activity
TthAA229_18180	COG0438	transferase activity, transferring glycosyl groups
TthAA229_18210	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
TthAA229_18220	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TthAA229_18230	COG3706	GGDEF domain
TthAA229_18300	COG0437	4 iron, 4 sulfur cluster binding
TthAA229_18330	COG0825	malonyl-CoA metabolic process
TthAA229_18340	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
TthAA229_18410	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
TthAA229_18460	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
TthAA229_18470	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
TthAA229_18480	COG0211	Belongs to the bacterial ribosomal protein bL27 family
TthAA229_18490	COG0261	This protein binds to 23S rRNA in the presence of protein L20
TthAA229_18510	COG4974	Belongs to the 'phage' integrase family
TthAA229_18710	COG0315	cyclic pyranopterin monophosphate synthase activity
TthAA229_18720	COG2860	membrane
TthAA229_18740	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
TthAA229_18770	COG0477	Major facilitator Superfamily
TthAA229_18780	COG1694	Mazg nucleotide pyrophosphohydrolase
TthAA229_18790	COG1803	Methylglyoxal synthase
TthAA229_18810	COG0301	tRNA thio-modification
TthAA229_18820	COG0154	amidase activity
TthAA229_18830	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
TthAA229_18860	COG2154	pterin-4-alpha-carbinolamine dehydratase
TthAA229_18870	COG1607	acyl-coa hydrolase
TthAA229_18890	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
TthAA229_18900	COG4149	molybdate abc transporter
TthAA229_18910	COG1840	ABC-type Fe3 transport system, periplasmic component
TthAA229_18940	COG0235	Class ii aldolase
TthAA229_18950	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
TthAA229_18960	COG0085	RNA polymerase activity
TthAA229_18980	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
TthAA229_18990	COG1077	Cell shape determining protein MreB Mrl
TthAA229_19000	COG1418	mRNA catabolic process
TthAA229_19000	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TthAA229_19010	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
TthAA229_19020	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
TthAA229_19030	COG1058	Belongs to the CinA family
TthAA229_19030	COG1546	Belongs to the CinA family
TthAA229_19040	COG0354	folic acid binding
TthAA229_19070	COG4948	Mandelate Racemase Muconate Lactonizing
TthAA229_19100	COG1175	transmembrane transport
TthAA229_19120	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
TthAA229_19140	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
TthAA229_19160	COG1136	(ABC) transporter
TthAA229_19160	COG0577	efflux transmembrane transporter activity
TthAA229_19170	COG4181	ATPase activity
TthAA229_19180	COG0446	pyridine nucleotide-disulphide oxidoreductase
TthAA229_19210	COG0396	ATPase activity
TthAA229_19220	COG0719	Fe-S assembly protein
TthAA229_19230	COG0719	Fe-S assembly protein
TthAA229_19240	COG2146	nitrite reductase [NAD(P)H] activity
TthAA229_19250	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TthAA229_19260	COG0512	Glutamine amidotransferase of anthranilate synthase
TthAA229_19270	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
TthAA229_19340	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
TthAA229_19350	COG2226	methyltransferase
TthAA229_19400	COG1774	PSP1 C-terminal conserved region
TthAA229_19410	COG0470	DNA polymerase III
TthAA229_19480	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
TthAA229_19490	COG0302	gtp cyclohydrolase
TthAA229_19540	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
TthAA229_19560	COG0395	ABC-type sugar transport system, permease component
TthAA229_19570	COG1804	L-carnitine dehydratase bile acid-inducible protein F
TthAA229_19580	COG1131	(ABC) transporter
TthAA229_19620	COG0556	nucleotide-excision repair
TthAA229_19630	COG0497	DNA recombination
TthAA229_19640	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
TthAA229_19650	COG0445	tRNA wobble uridine modification
TthAA229_19690	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TthAA229_19690	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TthAA229_19700	COG1543	Belongs to the glycosyl hydrolase 57 family
TthAA229_19710	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
TthAA229_19720	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
TthAA229_19730	COG0189	ligase activity
TthAA229_19760	COG0066	3-isopropylmalate dehydratase activity
TthAA229_19770	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TthAA229_19810	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
TthAA229_19820	COG1960	acyl-CoA dehydrogenase activity
TthAA229_19830	COG0163	prenyltransferase activity
TthAA229_19900	COG2096	Adenosyltransferase
TthAA229_19930	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
TthAA229_19940	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
TthAA229_19960	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
TthAA229_19970	COG0723	plastoquinol--plastocyanin reductase activity
TthAA229_19990	COG2010	Cytochrome c
TthAA229_20020	COG1653	transport
TthAA229_20030	COG0820	rRNA (adenine-C2-)-methyltransferase activity
TthAA229_20040	COG1960	acyl-CoA dehydrogenase activity
TthAA229_20060	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
TthAA229_20130	COG1131	(ABC) transporter
TthAA229_20180	COG3956	TIGRFAM MazG family protein
TthAA229_20200	COG0693	protein deglycase activity
TthAA229_20210	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
TthAA229_20230	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
TthAA229_20240	COG1937	Protein conserved in bacteria
TthAA229_20260	COG0674	pyruvate-flavodoxin oxidoreductase activity
TthAA229_20260	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TthAA229_20270	COG1013	pyruvate-flavodoxin oxidoreductase activity
TthAA229_20280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TthAA229_20290	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
TthAA229_20300	COG0072	phenylalanine-tRNA ligase activity
TthAA229_20300	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TthAA229_20320	COG0205	6-phosphofructokinase activity
TthAA229_20330	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
TthAA229_20350	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
TthAA229_20380	COG2333	competence protein COMEC
TthAA229_20380	COG0658	competence protein
TthAA229_20390	COG1475	DNA binding
TthAA229_20400	COG1192	Involved in chromosome partitioning
TthAA229_20410	COG0357	Ribosomal RNA small subunit methyltransferase G
TthAA229_20420	COG0445	tRNA wobble uridine modification
TthAA229_20450	COG0863	Belongs to the N(4) N(6)-methyltransferase family
TthAA229_20500	COG1857	crispr-associated protein
TthAA229_20540	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
TthAA229_20550	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
TthAA229_20600	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TthAA229_20610	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TthAA229_20640	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
TthAA229_20650	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
TthAA229_20720	COG2010	Cytochrome c
TthAA229_20800	COG2205	protein histidine kinase activity
TthAA229_20810	COG0745	RESPONSE REGULATOR receiver
TthAA229_20820	COG2010	Cytochrome c
TthAA229_20910	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
TthAA229_20920	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
TthAA229_20930	COG0363	glucosamine-6-phosphate deaminase activity
TthAA229_20960	COG0730	response to heat
TthAA229_21020	COG0671	phosphoesterase, PA-phosphatase related
TthAA229_21030	COG0745	RESPONSE REGULATOR receiver
TthAA229_21040	COG0745	RESPONSE REGULATOR receiver
TthAA229_21050	COG0642	Histidine kinase
TthAA229_21060	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
TthAA229_21080	COG1914	H( )-stimulated, divalent metal cation uptake system
TthAA229_21120	COG2329	Antibiotic biosynthesis monooxygenase
TthAA229_21280	COG0745	RESPONSE REGULATOR receiver
TthAA229_21290	COG5002	protein histidine kinase activity
TthAA229_21290	COG3850	Histidine kinase
TthAA229_21420	COG1942	4-Oxalocrotonate Tautomerase
TthAA229_21440	COG2084	Dehydrogenase
TthAA229_21520	COG2010	Cytochrome c
TthAA229_21540	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
TthAA229_21560	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
TthAA229_21610	COG1252	NADH dehydrogenase
TthAA229_21620	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
TthAA229_21640	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
TthAA229_21770	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
TthAA229_21810	COG2010	Cytochrome c
TthAA229_21820	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
TthAA229_21850	COG3256	nitric oxide reductase
TthAA229_21930	COG0243	molybdopterin cofactor binding
TthAA229_21950	COG1192	Involved in chromosome partitioning
TthAA229_21960	COG1475	DNA binding
TthAA229_21980	COG1475	DNA binding
TthAA229_22050	COG3345	alpha-galactosidase
TthAA229_22060	COG1085	galactose-1-phosphate uridylyltransferase
TthAA229_22120	COG1304	FMN binding
TthAA229_22140	COG1487	ribonuclease activity
TthAA229_22190	COG2124	cytochrome p450
TthAA229_22210	COG1562	ergosterol biosynthetic process
TthAA229_22230	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
TthAA229_22250	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TthAA229_22260	COG2723	6-phospho-beta-galactosidase activity
TthAA229_22280	COG1175	transmembrane transport
TthAA229_22310	COG1028	Short-chain dehydrogenase reductase Sdr
TthAA229_22320	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TthAA229_22340	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TthAA229_22350	COG0800	Aldolase
TthAA229_22410	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
TthAA229_22420	COG1785	Belongs to the alkaline phosphatase family
TthAA229_22430	COG1492	cobalamin metabolic process
TthAA229_22500	COG0778	Nitroreductase
TthAA229_22510	COG1648	precorrin-2 dehydrogenase activity
TthAA229_22510	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
TthAA229_22600	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
TthAA229_22610	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
TthAA229_22620	COG0588	phosphoglycerate mutase activity
TthAA229_22650	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
TthAA229_22670	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
TthAA229_22680	COG1797	cobyrinic acid a,c-diamide synthase activity
TthAA229_22700	COG3335	DDE superfamily endonuclease
TthAA229_22710	COG2211	Major facilitator Superfamily
TthAA229_22760	COG2211	Major facilitator Superfamily
TthAA229_22780	COG0739	heme binding
TthAA229_22930	COG1175	transmembrane transport
TthAA229_t00340	COG0544	peptidyl-prolyl cis-trans isomerase activity