locus-tag class description PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF00361 Proton-conducting membrane transporter PF00171 Aldehyde dehydrogenase family PF01575 MaoC like domain PF00171 Aldehyde dehydrogenase family PF01575 MaoC like domain PF05138 Phenylacetic acid catabolic protein PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF00005 ABC transporter PF08402 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF01950 Fructose-1,6-bisphosphatase PF01638 HxlR-like helix-turn-helix PF01638 HxlR-like helix-turn-helix PF00210 Ferritin-like domain PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF02445 Quinolinate synthetase A protein PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF03190 Protein of unknown function, DUF255 PF13180 PDZ domain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF02682 Carboxyltransferase domain, subdomain C and D PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF11871 Domain of unknown function (DUF3391) PF01966 HD domain PF00294 pfkB family carbohydrate kinase PF01966 HD domain PF00072 Response regulator receiver domain PF00171 Aldehyde dehydrogenase family PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02503 Polyphosphate kinase middle domain PF13090 Polyphosphate kinase C-terminal domain 2 PF17941 Polyphosphate kinase C-terminal domain 1 PF13089 Polyphosphate kinase N-terminal domain PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13533 Biotin-lipoyl like PF00005 ABC transporter PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00440 Bacterial regulatory proteins, tetR family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF12728 Helix-turn-helix domain PF03060 Nitronate monooxygenase PF14659 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF00581 Rhodanese-like domain PF03313 Serine dehydratase alpha chain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01245 Ribosomal protein L19 PF01746 tRNA (Guanine-1)-methyltransferase PF05239 PRC-barrel domain PF01782 RimM N-terminal domain PF00886 Ribosomal protein S16 PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF02310 B12 binding domain PF02310 B12 binding domain PF01642 Methylmalonyl-CoA mutase PF02310 B12 binding domain PF01642 Methylmalonyl-CoA mutase PF01545 Cation efflux family PF16916 Dimerisation domain of Zinc Transporter PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF01219 Prokaryotic diacylglycerol kinase PF02130 Uncharacterized protein family UPF0054 PF02562 PhoH-like protein PF12127 SigmaW regulon antibacterial PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF08501 Shikimate dehydrogenase substrate binding domain PF01205 Uncharacterized protein family UPF0029 PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF09281 Taq polymerase, exonuclease PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02547 Queuosine biosynthesis protein PF03747 ADP-ribosylglycohydrolase PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 GTP cyclohydrolase II PF00677 Lumazine binding domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF07498 Rho termination factor, N-terminal domain PF07497 Rho termination factor, RNA-binding domain PF00834 Ribulose-phosphate 3 epimerase family PF00923 Transaldolase/Fructose-6-phosphate aldolase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF01551 Peptidase family M23 PF01008 Initiation factor 2 subunit family PF01197 Ribosomal protein L31 PF02381 MraZ protein, putative antitoxin-like PF01795 MraW methylase family PF03793 PASTA domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF00953 Glycosyl transferase family 4 PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01098 Cell cycle protein PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF02491 SHS2 domain inserted in FTSA PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF02075 Crossover junction endodeoxyribonuclease RuvC PF04055 Radical SAM superfamily PF00290 Tryptophan synthase alpha chain PF00291 Pyridoxal-phosphate dependent enzyme PF02511 Thymidylate synthase complementing protein PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF12826 Helix-hairpin-helix motif PF02608 ABC transporter substrate-binding protein PnrA-like PF00005 ABC transporter PF01842 ACT domain PF01817 Chorismate mutase type II PF00800 Prephenate dehydratase PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF00756 Putative esterase PF03741 Integral membrane protein TerC family PF03741 Integral membrane protein TerC family PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF02681 Divergent PAP2 family PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF01029 NusB family PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00364 Biotin-requiring enzyme PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF00491 Arginase family PF00025 ADP-ribosylation factor family PF08113 Cytochrome c oxidase subunit IIa family PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF09125 Cytochrome C oxidase subunit II, transmembrane PF00115 Cytochrome C and Quinol oxidase polypeptide I PF10576 Iron-sulfur binding domain of endonuclease III PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF07690 Major Facilitator Superfamily PF00312 Ribosomal protein S15 PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF12706 Beta-lactamase superfamily domain PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF17770 Ribonuclease J C-terminal domain PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF01012 Electron transfer flavoprotein domain PF01012 Electron transfer flavoprotein domain PF00766 Electron transfer flavoprotein FAD-binding domain PF01039 Carboxyl transferase domain PF03167 Uracil DNA glycosylase superfamily PF14791 DNA polymerase beta thumb PF14716 Helix-hairpin-helix domain PF02811 PHP domain PF02073 Thermophilic metalloprotease (M29) PF00403 Heavy-metal-associated domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF13411 MerR HTH family regulatory protein PF00005 ABC transporter PF09383 NIL domain PF01053 Cys/Met metabolism PLP-dependent enzyme PF16868 NMT1-like family PF16868 NMT1-like family PF00005 ABC transporter PF01734 Patatin-like phospholipase PF01734 Patatin-like phospholipase PF12728 Helix-turn-helix domain PF00218 Indole-3-glycerol phosphate synthase PF00977 Histidine biosynthesis protein PF03129 Anticodon binding domain PF09180 Prolyl-tRNA synthetase, C-terminal PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF00528 Binding-protein-dependent transport system inner membrane component PF00497 Bacterial extracellular solute-binding proteins, family 3 PF11897 Protein of unknown function (DUF3417) PF00343 Carbohydrate phosphorylase PF02386 Cation transport protein PF02080 TrkA-C domain PF02254 TrkA-N domain PF04055 Radical SAM superfamily PF18693 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF01676 Metalloenzyme superfamily PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase PF13464 Domain of unknown function (DUF4115) PF04227 Indigoidine synthase A like protein PF03881 Fructosamine kinase PF01451 Low molecular weight phosphotyrosine protein phosphatase PF07730 Histidine kinase PF17200 Single Cache domain 2 PF00588 SpoU rRNA Methylase family PF17092 Penicillin-binding protein OB-like domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF01791 DeoC/LacD family aldolase PF02545 Maf-like protein PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF04238 Protein of unknown function (DUF420) PF01368 DHH family PF02272 DHHA1 domain PF01960 ArgJ family PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF02660 Glycerol-3-phosphate acyltransferase PF00005 ABC transporter PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF10369 Small subunit of acetolactate synthase PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF12464 Maltose acetyltransferase PF12019 Type II transport protein GspH PF07963 Prokaryotic N-terminal methylation motif PF07963 Prokaryotic N-terminal methylation motif PF07650 KH domain PF01926 50S ribosome-binding GTPase PF00579 tRNA synthetases class I (W and Y) PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF00106 short chain dehydrogenase PF02481 DNA recombination-mediator protein A PF17782 DprA winged helix domain PF00920 Dehydratase family PF13416 Bacterial extracellular solute-binding protein PF13416 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08402 TOBE domain PF01098 Cell cycle protein PF03776 Septum formation topological specificity factor MinE PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF05067 Manganese containing catalase PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF00814 Glycoprotease family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01906 Putative heavy-metal-binding PF00270 DEAD/DEAH box helicase PF09369 Domain of unknown function (DUF1998) PF00271 Helicase conserved C-terminal domain PF16701 Adenylate cyclase regulatory domain PF00211 Adenylate and Guanylate cyclase catalytic domain PF13662 Toprim domain PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF02446 4-alpha-glucanotransferase PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00892 EamA-like transporter family PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF01063 Amino-transferase class IV PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF05193 Peptidase M16 inactive domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17191 RecG wedge domain PF01813 ATP synthase subunit D PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF16886 ATPsynthase alpha/beta subunit N-term extension PF01990 ATP synthase (F/14-kDa) subunit PF01992 ATP synthase (C/AC39) subunit PF01991 ATP synthase (E/31 kDa) subunit PF01496 V-type ATPase 116kDa subunit family PF18670 V-type ATPase subunit I, N-terminal domain PF10672 S-adenosylmethionine-dependent methyltransferase PF17785 PUA-like domain PF00211 Adenylate and Guanylate cyclase catalytic domain PF00069 Protein kinase domain PF03023 Lipid II flippase MurJ PF13476 AAA domain PF00149 Calcineurin-like phosphoesterase PF12320 Type 5 capsule protein repressor C-terminal domain PF12105 SpoU, rRNA methylase, C-terminal PF00588 SpoU rRNA Methylase family PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF00005 ABC transporter PF17820 PDZ domain PF03572 Peptidase family S41 PF01471 Putative peptidoglycan binding domain PF00133 tRNA synthetases class I (I, L, M and V) PF09334 tRNA synthetases class I (M) PF01588 Putative tRNA binding domain PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF00578 AhpC/TSA family PF02608 ABC transporter substrate-binding protein PnrA-like PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF01634 ATP phosphoribosyltransferase PF00005 ABC transporter PF12804 MobA-like NTP transferase domain PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF00953 Glycosyl transferase family 4 PF13393 Histidyl-tRNA synthetase PF02350 UDP-N-acetylglucosamine 2-epimerase PF00571 CBS domain PF02163 Peptidase family M50 PF13180 PDZ domain PF17820 PDZ domain PF01842 ACT domain PF00551 Formyl transferase PF03737 Aldolase/RraA PF01119 DNA mismatch repair protein, C-terminal domain PF08676 MutL C terminal dimerisation domain PF00692 dUTPase PF01624 MutS domain I PF05188 MutS domain II PF05192 MutS domain III PF05190 MutS family domain IV PF00488 MutS domain V PF00034 Cytochrome c PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF13458 Periplasmic binding protein PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF11862 Domain of unknown function (DUF3382) PF02653 Branched-chain amino acid transport system / permease component PF11862 Domain of unknown function (DUF3382) PF02653 Branched-chain amino acid transport system / permease component PF11862 Domain of unknown function (DUF3382) PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF08245 Mur ligase middle domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00285 Citrate synthase, C-terminal domain PF01661 Macro domain PF00899 ThiF family PF01238 Phosphomannose isomerase type I PF04493 Endonuclease V PF00216 Bacterial DNA-binding protein PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF05958 tRNA (Uracil-5-)-methyltransferase PF01220 Dehydroquinase class II PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF03091 CutA1 divalent ion tolerance protein PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF03477 ATP cone domain PF02754 Cysteine-rich domain PF11870 Domain of unknown function (DUF3390) PF13183 4Fe-4S dicluster domain PF02589 LUD domain PF02589 LUD domain PF10502 Signal peptidase, peptidase S26 PF03793 PASTA domain PF00069 Protein kinase domain PF01520 N-acetylmuramoyl-L-alanine amidase PF03309 Type III pantothenate kinase PF00072 Response regulator receiver domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF11104 Type IV pilus assembly protein PilM; PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF01264 Chorismate synthase PF01202 Shikimate kinase PF01761 3-dehydroquinate synthase PF01189 16S rRNA methyltransferase RsmB/F PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF PF17126 RsmF rRNA methyltransferase first C-terminal domain PF01648 4'-phosphopantetheinyl transferase superfamily PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF02146 Sir2 family PF01256 Carbohydrate kinase PF03853 YjeF-related protein N-terminus PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF17070 30S ribosomal protein Thx PF01649 Ribosomal protein S20 PF00579 tRNA synthetases class I (W and Y) PF00355 Rieske [2Fe-2S] domain PF01042 Endoribonuclease L-PSP PF03918 Cytochrome C biogenesis protein PF08534 Redoxin PF08534 Redoxin PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PF01578 Cytochrome C assembly protein PF03100 CcmE PF01578 Cytochrome C assembly protein PF03379 CcmB protein PF00005 ABC transporter PF02683 Cytochrome C biogenesis protein transmembrane region PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF00174 Oxidoreductase molybdopterin binding domain PF00069 Protein kinase domain PF13360 PQQ-like domain PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding PF07992 Pyridine nucleotide-disulphide oxidoreductase PF10518 TAT (twin-arginine translocation) pathway signal sequence PF00034 Cytochrome c PF00005 ABC transporter PF08402 TOBE domain PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF07311 Dodecin PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF00378 Enoyl-CoA hydratase/isomerase PF01048 Phosphorylase superfamily PF00005 ABC transporter PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF04029 2-phosphosulpholactate phosphatase PF00005 ABC transporter PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF01134 Glucose inhibited division protein A PF00977 Histidine biosynthesis protein PF01502 Phosphoribosyl-AMP cyclohydrolase PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF01026 TatD related DNase PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF03462 PCRF domain PF00472 RF-1 domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF13085 2Fe-2S iron-sulfur cluster binding domain PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF02675 S-adenosylmethionine decarboxylase PF00005 ABC transporter PF00005 ABC transporter PF00348 Polyprenyl synthetase PF00348 Polyprenyl synthetase PF01895 PhoU domain PF01738 Dienelactone hydrolase family PF00156 Phosphoribosyl transferase domain PF00380 Ribosomal protein S9/S16 PF00572 Ribosomal protein L13 PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01464 Transglycosylase SLT domain PF00999 Sodium/hydrogen exchanger family PF00571 CBS domain PF01368 DHH family PF02272 DHHA1 domain PF01743 Poly A polymerase head domain PF00999 Sodium/hydrogen exchanger family PF02080 TrkA-C domain PF09123 Domain of unknown function (DUF1931) PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00085 Thioredoxin PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF01025 GrpE PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF00012 Hsp70 protein PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF10672 S-adenosylmethionine-dependent methyltransferase PF17785 PUA-like domain PF01343 Peptidase family S49 PF00491 Arginase family PF14464 Prokaryotic homologs of the JAB domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF03006 Haemolysin-III related PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF02627 Carboxymuconolactone decarboxylase family PF13419 Haloacid dehalogenase-like hydrolase PF13419 Haloacid dehalogenase-like hydrolase PF13419 Haloacid dehalogenase-like hydrolase PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF10397 Adenylosuccinate lyase C-terminus PF00206 Lyase PF01259 SAICAR synthetase PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF13537 Glutamine amidotransferase domain PF00156 Phosphoribosyl transferase domain PF02926 THUMP domain PF01170 Putative RNA methylase family UPF0020 PF00350 Dynamin family PF00464 Serine hydroxymethyltransferase PF02463 RecF/RecN/SMC N terminal domain PF00682 HMGL-like PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF01142 tRNA pseudouridine synthase D (TruD) PF00773 RNB domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF18324 Hypothetical protein TT1725 PF01266 FAD dependent oxidoreductase PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF01171 PP-loop family PF14437 MafB19-like deaminase PF03061 Thioesterase superfamily PF01541 GIY-YIG catalytic domain PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF01048 Phosphorylase superfamily PF02664 S-Ribosylhomocysteinase (LuxS) PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF05685 Putative restriction endonuclease PF08734 GYD domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00075 RNase H PF01039 Carboxyl transferase domain PF01914 MarC family integral membrane protein PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF01316 Arginine repressor, DNA binding domain PF02863 Arginine repressor, C-terminal domain PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF01192 RNA polymerase Rpb6 PF00625 Guanylate kinase PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF16657 Maltogenic Amylase, C-terminal domain PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF08486 Stage II sporulation protein PF10079 Bacillithiol biosynthesis BshC PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF02621 Menaquinone biosynthesis PF01916 Deoxyhypusine synthase PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF00171 Aldehyde dehydrogenase family PF01619 Proline dehydrogenase PF07729 FCD domain PF00392 Bacterial regulatory proteins, gntR family PF00155 Aminotransferase class I and II PF07669 Eco57I restriction-modification methylase PF12950 TaqI-like C-terminal specificity domain PF09573 TaqI restriction endonuclease PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF01195 Peptidyl-tRNA hydrolase PF01386 Ribosomal L25p family PF14693 Ribosomal protein TL5, C-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF11808 Phosphate regulon sensor protein PhoR PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF03793 PASTA domain PF00069 Protein kinase domain PF07690 Major Facilitator Superfamily PF00490 Delta-aminolevulinic acid dehydratase PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF02575 YbaB/EbfC DNA-binding family PF02132 RecR protein PF13662 Toprim domain PF07676 WD40-like Beta Propeller Repeat PF00326 Prolyl oligopeptidase family PF01784 NIF3 (NGG1p interacting factor 3) PF02223 Thymidylate kinase PF01812 5-formyltetrahydrofolate cyclo-ligase family PF00156 Phosphoribosyl transferase domain PF01230 HIT domain PF04055 Radical SAM superfamily PF00919 Uncharacterized protein family UPF0004 PF02390 Putative methyltransferase PF00155 Aminotransferase class I and II PF00011 Hsp20/alpha crystallin family PF00581 Rhodanese-like domain PF00753 Metallo-beta-lactamase superfamily PF02566 OsmC-like protein PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08402 TOBE domain PF01416 tRNA pseudouridine synthase PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF01521 Iron-sulphur cluster biosynthesis PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF17810 Arginine decarboxylase helical bundle domain PF17944 Arginine decarboxylase C-terminal helical extension PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF01177 Asp/Glu/Hydantoin racemase PF03641 Possible lysine decarboxylase PF00488 MutS domain V PF01713 Smr domain PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF00575 S1 RNA binding domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF14785 Maltose transport system permease protein MalF P2 domain PF01725 Ham1 family PF02629 CoA binding domain PF06971 Putative DNA-binding protein N-terminus PF02401 LytB protein PF01196 Ribosomal protein L17 PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF00411 Ribosomal protein S11 PF00416 Ribosomal protein S13/S18 PF00444 Ribosomal protein L36 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF01176 Translation initiation factor 1A / IF-1 PF00557 Metallopeptidase family M24 PF00344 SecY translocase PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF00327 Ribosomal protein L30p/L7e PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF00347 Ribosomal protein L6 PF00410 Ribosomal protein S8 PF00253 Ribosomal protein S14p/S29e PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF00467 KOW motif PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF00238 Ribosomal protein L14p/L23e PF00366 Ribosomal protein S17 PF00831 Ribosomal L29 protein PF00252 Ribosomal protein L16p/L10e PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF00237 Ribosomal protein L22p/L17e PF00203 Ribosomal protein S19 PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF00276 Ribosomal protein L23 PF00573 Ribosomal protein L4/L1 family PF00297 Ribosomal protein L3 PF00338 Ribosomal protein S10p/S20e PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00177 Ribosomal protein S7p/S5e PF00164 Ribosomal protein S12/S23 PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF03575 Peptidase family S51 PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF01235 Sodium:alanine symporter family PF03749 Sugar fermentation stimulation protein RE domain PF17746 SfsA N-terminal OB domain PF08359 YsiA-like protein, C-terminal region PF00440 Bacterial regulatory proteins, tetR family PF04055 Radical SAM superfamily PF01894 Uncharacterised protein family UPF0047 PF06778 Chlorite dismutase PF00924 Mechanosensitive ion channel PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF00403 Heavy-metal-associated domain PF02583 Metal-sensitive transcriptional repressor PF00403 Heavy-metal-associated domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01209 ubiE/COQ5 methyltransferase family PF00266 Aminotransferase class-V PF01592 NifU-like N terminal domain PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF00561 alpha/beta hydrolase fold PF00364 Biotin-requiring enzyme PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF00156 Phosphoribosyl transferase domain PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF02585 GlcNAc-PI de-N-acetylase PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF02504 Fatty acid synthesis protein PF00085 Thioredoxin PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF00534 Glycosyl transferases group 1 PF00202 Aminotransferase class-III PF01207 Dihydrouridine synthase (Dus) PF02673 Bacitracin resistance protein BacA PF01546 Peptidase family M20/M25/M40 PF00990 Diguanylate cyclase, GGDEF domain PF17158 Membrane-associated sensor, integral membrane domain PF00037 4Fe-4S binding domain PF13247 4Fe-4S dicluster domain PF00266 Aminotransferase class-V PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF01551 Peptidase family M23 PF08460 Bacterial SH3 domain PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain PF01116 Fructose-bisphosphate aldolase class-II PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF02569 Pantoate-beta-alanine ligase PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF01467 Cytidylyltransferase-like PF09269 Domain of unknown function (DUF1967) PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF01016 Ribosomal L27 protein PF00829 Ribosomal prokaryotic L21 protein PF00313 'Cold-shock' DNA-binding domain PF00313 'Cold-shock' DNA-binding domain PF01139 tRNA-splicing ligase RtcB PF01967 MoaC family PF02542 YgbB family PF03819 MazG nucleotide pyrophosphohydrolase domain PF02142 MGS-like domain PF02568 Thiamine biosynthesis protein (ThiI) PF02926 THUMP domain PF01425 Amidase PF03600 Citrate transporter PF00037 4Fe-4S binding domain PF01329 Pterin 4 alpha carbinolamine dehydratase PF03061 Thioesterase superfamily PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF06827 Zinc finger found in FPG and IleRS PF00528 Binding-protein-dependent transport system inner membrane component PF00561 alpha/beta hydrolase fold PF00596 Class II Aldolase and Adducin N-terminal domain PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF07977 FabA-like domain PF01966 HD domain PF00013 KH domain PF12072 Domain of unknown function (DUF3552) PF00154 recA bacterial DNA recombination protein PF02834 LigT like Phosphoesterase PF02464 Competence-damaged protein PF18146 Damage-inducible protein CinA KH domain PF00994 Probable molybdopterin binding domain PF12804 MobA-like NTP transferase domain PF13419 Haloacid dehalogenase-like hydrolase PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF00528 Binding-protein-dependent transport system inner membrane component PF03652 Holliday junction resolvase PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00005 ABC transporter PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00463 Isocitrate lyase family PF00005 ABC transporter PF01458 Uncharacterized protein family (UPF0051) PF01458 Uncharacterized protein family (UPF0051) PF00355 Rieske [2Fe-2S] domain PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF00117 Glutamine amidotransferase class-I PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF01451 Low molecular weight phosphotyrosine protein phosphatase PF01209 ubiE/COQ5 methyltransferase family PF04468 PSP1 C-terminal conserved region PF09115 DNA polymerase III, delta subunit, C terminal PF00395 S-layer homology domain PF00395 S-layer homology domain PF00082 Subtilase family PF00082 Subtilase family PF01483 Proprotein convertase P-domain PF00082 Subtilase family PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF03129 Anticodon binding domain PF02824 TGS domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF01227 GTP cyclohydrolase I PF00132 Bacterial transferase hexapeptide (six repeats) PF00293 NUDIX domain PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF17831 Pyruvate dehydrogenase E1 component middle domain PF00456 Transketolase, thiamine diphosphate binding domain PF00004 ATPase family associated with various cellular activities (AAA) PF16193 AAA C-terminal domain PF12002 MgsA AAA+ ATPase C terminal PF00528 Binding-protein-dependent transport system inner membrane component PF02515 CoA-transferase family III PF00005 ABC transporter PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02151 UvrB/uvrC motif PF12344 Ultra-violet resistance protein B PF17757 UvrB interaction domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01380 SIS domain PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF14815 NUDIX domain PF02540 NAD synthase PF00795 Carbon-nitrogen hydrolase PF02540 NAD synthase PF09210 Domain of unknown function (DUF1957) PF03065 Glycosyl hydrolase family 57 PF00696 Amino acid kinase family PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF08443 RimK-like ATP-grasp domain PF08271 TFIIB zinc-binding PF00694 Aconitase C-terminal domain PF00330 Aconitase family (aconitate hydratase) PF00334 Nucleoside diphosphate kinase PF00682 HMGL-like PF01255 Putative undecaprenyl diphosphate synthase PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF02441 Flavoprotein PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00005 ABC transporter PF01923 Cobalamin adenosyltransferase PF00696 Amino acid kinase family PF01472 PUA domain PF02152 Dihydroneopterin aldolase PF00171 Aldehyde dehydrogenase family PF13631 Cytochrome b(N-terminal)/b6/petB PF00355 Rieske [2Fe-2S] domain PF00034 Cytochrome c PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP PF13416 Bacterial extracellular solute-binding protein PF04055 Radical SAM superfamily PF00809 Pterin binding enzyme PF13344 Haloacid dehalogenase-like hydrolase PF00293 NUDIX domain PF03462 PCRF domain PF00472 RF-1 domain PF02535 ZIP Zinc transporter PF02630 SCO1/SenC PF01906 Putative heavy-metal-binding PF03819 MazG nucleotide pyrophosphohydrolase domain PF00293 NUDIX domain PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF00696 Amino acid kinase family PF12169 DNA polymerase III subunits gamma and tau domain III PF02583 Metal-sensitive transcriptional repressor PF17147 Pyruvate:ferredoxin oxidoreductase core domain II PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF01266 FAD dependent oxidoreductase PF07690 Major Facilitator Superfamily PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF01409 tRNA synthetases class II core domain (F) PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF00365 Phosphofructokinase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00719 Inorganic pyrophosphatase PF03772 Competence protein PF13567 Domain of unknown function (DUF4131) PF00753 Metallo-beta-lactamase superfamily PF17762 HTH domain found in ParB protein PF02195 ParB-like nuclease domain PF13614 AAA domain PF02527 rRNA small subunit methyltransferase G PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF00308 Bacterial dnaA protein PF08299 Bacterial dnaA protein helix-turn-helix PF11638 DnaA N-terminal domain PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF03480 Bacterial extracellular solute-binding protein, family 7 PF03480 Bacterial extracellular solute-binding protein, family 7 PF01351 Ribonuclease HII PF00135 Carboxylesterase family PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF01078 Magnesium chelatase, subunit ChlI PF13335 Magnesium chelatase, subunit ChlI C-terminal PF06094 Gamma-glutamyl cyclotransferase, AIG2-like PF02661 Fic/DOC family PF12728 Helix-turn-helix domain PF00892 EamA-like transporter family PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF02233 NAD(P) transhydrogenase beta subunit PF00466 Ribosomal protein L10 PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF06725 3D domain PF03990 G5-linked-Ubiquitin-like domain PF07501 G5 domain PF13684 Dihydroxyacetone kinase family PF02734 DAK2 domain PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF01509 TruB family pseudouridylate synthase (N terminal domain) PF00378 Enoyl-CoA hydratase/isomerase PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF00156 Phosphoribosyl transferase domain PF00709 Adenylosuccinate synthetase PF01209 ubiE/COQ5 methyltransferase family PF00483 Nucleotidyl transferase PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF02590 Predicted SPOUT methyltransferase PF00676 Dehydrogenase E1 component PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00483 Nucleotidyl transferase PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PF04055 Radical SAM superfamily PF03099 Biotin/lipoate A/B protein ligase family PF00106 short chain dehydrogenase PF13654 AAA domain PF05362 Lon protease (S16) C-terminal proteolytic domain PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF01084 Ribosomal protein S18 PF00436 Single-strand binding protein family PF01250 Ribosomal protein S6 PF00687 Ribosomal protein L1p/L10e family PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF00467 KOW motif PF02357 Transcription termination factor nusG PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF00471 Ribosomal protein L33 PF01804 Penicillin amidase PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF10996 Beta-Casp domain PF00753 Metallo-beta-lactamase superfamily PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF01475 Ferric uptake regulator family PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF07690 Major Facilitator Superfamily PF13476 AAA domain PF01476 LysM domain PF00877 NlpC/P60 family PF00881 Nitroreductase family PF06750 Bacterial Peptidase A24 N-terminal domain PF01478 Type IV leader peptidase family PF02074 Carboxypeptidase Taq (M32) metallopeptidase PF00118 TCP-1/cpn60 chaperonin family PF00166 Chaperonin 10 Kd subunit PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF00248 Aldo/keto reductase family PF00342 Phosphoglucose isomerase PF01293 Phosphoenolpyruvate carboxykinase PF00291 Pyridoxal-phosphate dependent enzyme PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF14698 Argininosuccinate lyase C-terminal PF00206 Lyase PF00764 Arginosuccinate synthase PF00082 Subtilase family PF04151 Bacterial pre-peptidase C-terminal domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF16078 2-oxoglutarate dehydrogenase N-terminus PF00676 Dehydrogenase E1 component PF16870 2-oxoglutarate dehydrogenase C-terminal PF02779 Transketolase, pyrimidine binding domain PF00378 Enoyl-CoA hydratase/isomerase PF07499 RuvA, C-terminal domain PF01330 RuvA N terminal domain PF03641 Possible lysine decarboxylase PF00582 Universal stress protein family PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00480 ROK family PF04551 GcpE protein PF01702 Queuine tRNA-ribosyltransferase PF00860 Permease family PF00860 Permease family PF01594 AI-2E family transporter PF02628 Cytochrome oxidase assembly protein PF01040 UbiA prenyltransferase family PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF00034 Cytochrome c PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00510 Cytochrome c oxidase subunit III PF01933 Uncharacterised protein family UPF0052 PF03668 P-loop ATPase protein family PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF01327 Polypeptide deformylase PF02457 DisA bacterial checkpoint controller nucleotide-binding PF15937 prlF antitoxin for toxin YhaV_toxin PF01676 Metalloenzyme superfamily PF02219 Methylenetetrahydrofolate reductase PF00857 Isochorismatase family PF00730 HhH-GPD superfamily base excision DNA repair protein PF02811 PHP domain PF00174 Oxidoreductase molybdopterin binding domain PF02641 Uncharacterized ACR, COG1993 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF00885 6,7-dimethyl-8-ribityllumazine synthase PF00994 Probable molybdopterin binding domain PF00155 Aminotransferase class I and II PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF00291 Pyridoxal-phosphate dependent enzyme PF04020 Mycobacterial 4 TMS phage holin, superfamily IV PF00571 CBS domain PF01380 SIS domain PF00582 Universal stress protein family PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF01547 Bacterial extracellular solute-binding protein PF01975 Survival protein SurE PF01975 Survival protein SurE PF02578 Multi-copper polyphenol oxidoreductase laccase PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF02934 GatB/GatE catalytic domain PF02637 GatB domain PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00300 Histidine phosphatase superfamily (branch 1) PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02021 Uncharacterised protein family UPF0102 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PF02525 Flavodoxin-like fold PF00814 Glycoprotease family PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF01790 Prolipoprotein diacylglyceryl transferase PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF12804 MobA-like NTP transferase domain PF02416 mttA/Hcf106 family PF00902 Sec-independent protein translocase protein (TatC) PF01817 Chorismate mutase type II PF00793 DAHP synthetase I family PF00890 FAD binding domain PF00890 FAD binding domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF08240 Alcohol dehydrogenase GroES-like domain PF13823 Alcohol dehydrogenase GroES-associated PF00107 Zinc-binding dehydrogenase PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF17864 RuvB AAA lid domain PF05491 RuvB C-terminal winged helix domain PF05496 Holliday junction DNA helicase RuvB P-loop domain PF02548 Ketopantoate hydroxymethyltransferase PF00849 RNA pseudouridylate synthase PF01555 DNA methylase PF00155 Aminotransferase class I and II PF01966 HD domain PF13286 Phosphohydrolase-associated domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00550 Phosphopantetheine attachment site PF00698 Acyl transferase domain PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF01783 Ribosomal L32p protein family PF00830 Ribosomal L28 family PF00881 Nitroreductase family PF00155 Aminotransferase class I and II PF00475 Imidazoleglycerol-phosphate dehydratase PF01252 Signal peptidase (SPase) II PF00117 Glutamine amidotransferase class-I PF00294 pfkB family carbohydrate kinase PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF02600 Disulfide bond formation protein DsbB PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF00749 tRNA synthetases class I (E and Q), catalytic domain PF00005 ABC transporter PF00999 Sodium/hydrogen exchanger family PF02080 TrkA-C domain PF02254 TrkA-N domain PF05175 Methyltransferase small domain PF17827 PrmC N-terminal domain PF02096 60Kd inner membrane protein PF01809 Putative membrane protein insertion efficiency factor PF00825 Ribonuclease P PF00468 Ribosomal protein L34 PF00501 AMP-binding enzyme PF02653 Branched-chain amino acid transport system / permease component PF00005 ABC transporter PF00950 ABC 3 transport family PF02082 Transcriptional regulator PF00266 Aminotransferase class-V PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF02224 Cytidylate kinase PF00155 Aminotransferase class I and II PF00293 NUDIX domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00698 Acyl transferase domain PF08240 Alcohol dehydrogenase GroES-like domain PF16197 Ketoacyl-synthetase C-terminal extension PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF08659 KR domain PF00550 Phosphopantetheine attachment site PF14765 Polyketide synthase dehydratase PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00571 CBS domain PF00850 Histone deacetylase domain PF02597 ThiS family PF01171 PP-loop family PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF03633 Glycosyl hydrolase family 65, C-terminal domain PF03632 Glycosyl hydrolase family 65 central catalytic domain PF03636 Glycosyl hydrolase family 65, N-terminal domain PF02358 Trehalose-phosphatase PF00982 Glycosyltransferase family 20 PF00128 Alpha amylase, catalytic domain PF01209 ubiE/COQ5 methyltransferase family PF01209 ubiE/COQ5 methyltransferase family PF00795 Carbon-nitrogen hydrolase PF08331 Domain of unknown function (DUF1730) PF00781 Diacylglycerol kinase catalytic domain PF01842 ACT domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF00291 Pyridoxal-phosphate dependent enzyme PF11497 NADH-quinone oxidoreductase chain 15 PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF13660 Domain of unknown function (DUF4147) PF05161 MOFRL family PF01850 PIN domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF01274 Malate synthase PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF13411 MerR HTH family regulatory protein PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF01588 Putative tRNA binding domain PF00501 AMP-binding enzyme PF14535 AMP-binding enzyme C-terminal domain PF00501 AMP-binding enzyme PF14535 AMP-binding enzyme C-terminal domain PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF00731 AIR carboxylase PF00850 Histone deacetylase domain PF01883 Iron-sulfur cluster assembly protein PF01883 Iron-sulfur cluster assembly protein PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF01597 Glycine cleavage H-protein PF02347 Glycine cleavage system P-protein PF02347 Glycine cleavage system P-protein PF06574 FAD synthetase PF01687 Riboflavin kinase PF00293 NUDIX domain PF01979 Amidohydrolase family PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF05175 Methyltransferase small domain PF08468 Methyltransferase small domain N-terminal PF00696 Amino acid kinase family PF01842 ACT domain PF13840 ACT domain PF00156 Phosphoribosyl transferase domain PF00588 SpoU rRNA Methylase family PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF02629 CoA binding domain PF00549 CoA-ligase PF08442 ATP-grasp domain PF00549 CoA-ligase PF01861 Branched-chain polyamine synthase A C-terminal domain PF01938 TRAM domain PF18073 Rubredoxin metal binding domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00270 DEAD/DEAH box helicase PF13749 Putative ATP-dependent DNA helicase recG C-terminal PF17191 RecG wedge domain PF01728 FtsJ-like methyltransferase PF01479 S4 domain PF02637 GatB domain PF00749 tRNA synthetases class I (E and Q), catalytic domain PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF00378 Enoyl-CoA hydratase/isomerase PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF01632 Ribosomal protein L35 PF00453 Ribosomal protein L20 PF02660 Glycerol-3-phosphate acyltransferase PF00909 Ammonium Transporter Family PF01048 Phosphorylase superfamily PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF10415 Fumarase C C-terminus PF00206 Lyase PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF01048 Phosphorylase superfamily PF01168 Alanine racemase, N-terminal domain PF00543 Nitrogen regulatory protein P-II PF16360 GTP-binding GTPase Middle Region PF13167 GTP-binding GTPase N-terminal PF01926 50S ribosome-binding GTPase PF00708 Acylphosphatase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF07995 Glucose / Sorbosone dehydrogenase PF01425 Amidase PF14480 DNA polymerase III polC-type N-terminus I PF11490 DNA polymerase III polC-type N-terminus II PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF00929 Exonuclease PF01628 HrcA protein C terminal domain PF00485 Phosphoribulokinase / Uridine kinase family PF00005 ABC transporter PF17912 MalK OB fold domain PF03459 TOBE domain PF00266 Aminotransferase class-V PF04260 Protein of unknown function (DUF436) PF02391 MoaE protein PF00501 AMP-binding enzyme PF13458 Periplasmic binding protein PF16363 GDP-mannose 4,6 dehydratase PF10509 Galactokinase galactose-binding signature PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF01297 Zinc-uptake complex component A periplasmic PF01593 Flavin containing amine oxidoreductase PF00762 Ferrochelatase PF01208 Uroporphyrinogen decarboxylase (URO-D) PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF02261 Aspartate decarboxylase PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF05670 NFACT protein RNA binding domain PF08704 tRNA methyltransferase complex GCD14 subunit PF06153 Cyclic-di-AMP receptor PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF00574 Clp protease PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF17956 Nicotinate phosphoribosyltransferase C-terminal domain PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17764 3′ DNA-binding domain (3′BD) PF18074 Primosomal protein N C-terminal domain PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF13277 YmdB-like protein PF00311 Phosphoenolpyruvate carboxylase PF01741 Large-conductance mechanosensitive channel, MscL PF02416 mttA/Hcf106 family PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF00227 Proteasome subunit PF08335 GlnD PII-uridylyltransferase PF01966 HD domain PF01909 Nucleotidyltransferase domain PF01565 FAD binding domain PF02397 Bacterial sugar transferase PF13579 Glycosyl transferase 4-like domain PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01943 Polysaccharide biosynthesis protein PF14667 Polysaccharide biosynthesis C-terminal domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF01883 Iron-sulfur cluster assembly protein PF10609 NUBPL iron-transfer P-loop NTPase PF04452 RNA methyltransferase PF00106 short chain dehydrogenase PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF00698 Acyl transferase domain PF08240 Alcohol dehydrogenase GroES-like domain PF08990 Erythronolide synthase docking PF09277 Erythronolide synthase, docking PF16197 Ketoacyl-synthetase C-terminal extension PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF08659 KR domain PF00550 Phosphopantetheine attachment site PF14765 Polyketide synthase dehydratase PF00296 Luciferase-like monooxygenase PF01747 ATP-sulfurylase PF14306 PUA-like domain PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01925 Sulfite exporter TauE/SafE PF01507 Phosphoadenosine phosphosulfate reductase family PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF04012 PspA/IM30 family PF02602 Uroporphyrinogen-III synthase HemD PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF02581 Thiamine monophosphate synthase PF02597 ThiS family PF05690 Thiazole biosynthesis protein ThiG PF01266 FAD dependent oxidoreductase PF05690 Thiazole biosynthesis protein ThiG PF01964 Radical SAM ThiC family PF07690 Major Facilitator Superfamily PF08543 Phosphomethylpyrimidine kinase PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00480 ROK family PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00528 Binding-protein-dependent transport system inner membrane component PF00106 short chain dehydrogenase PF00005 ABC transporter PF00005 ABC transporter PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF04760 Translation initiation factor IF-2, N-terminal region PF00005 ABC transporter PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF02576 RimP N-terminal domain PF17384 RimP C-terminal SH3 domain PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF01680 SOR/SNZ family PF01022 Bacterial regulatory protein, arsR family PF00403 Heavy-metal-associated domain PF01174 SNO glutamine amidotransferase family PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF02567 Phenazine biosynthesis-like protein PF04294 VanW like protein PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF00005 ABC transporter PF08402 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF03167 Uracil DNA glycosylase superfamily PF00815 Histidinol dehydrogenase PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF02540 NAD synthase PF03816 Cell envelope-related transcriptional attenuator domain PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF00873 AcrB/AcrD/AcrF family PF01131 DNA topoisomerase PF01751 Toprim domain PF01396 Topoisomerase DNA binding C4 zinc finger PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF00701 Dihydrodipicolinate synthetase family PF01842 ACT domain PF03315 Serine dehydratase beta chain PF14528 LAGLIDADG-like domain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF08343 Ribonucleotide reductase N-terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF00535 Glycosyl transferase family 2 PF01032 FecCD transport family PF00005 ABC transporter PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF00144 Beta-lactamase PF01212 Beta-eliminating lyase PF18357 Diphteria toxin repressor SH3 domain PF02742 Iron dependent repressor, metal binding and dimerisation domain PF01325 Iron dependent repressor, N-terminal DNA binding domain PF13026 Protein of unknown function (DUF3887) PF12146 Serine aminopeptidase, S33 PF00561 alpha/beta hydrolase fold PF00459 Inositol monophosphatase family PF01053 Cys/Met metabolism PLP-dependent enzyme PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF03576 Peptidase family S58 PF03480 Bacterial extracellular solute-binding protein, family 7 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF13180 PDZ domain PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF01180 Dihydroorotate dehydrogenase PF09827 CRISPR associated protein Cas2 PF01979 Amidohydrolase family PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF00156 Phosphoribosyl transferase domain PF01925 Sulfite exporter TauE/SafE PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00583 Acetyltransferase (GNAT) family PF04079 Segregation and condensation complex subunit ScpB PF03481 Putative GTP-binding controlling metal-binding PF01300 Telomere recombination PF00482 Type II secretion system (T2SS), protein F PF01842 ACT domain PF02153 Prephenate dehydrogenase PF18152 DAHP synthase ferredoxin-like domain PF00793 DAHP synthetase I family PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF04264 YceI-like domain PF02621 Menaquinone biosynthesis PF04055 Radical SAM superfamily PF00356 Bacterial regulatory proteins, lacI family PF02660 Glycerol-3-phosphate acyltransferase PF01557 Fumarylacetoacetate (FAA) hydrolase family PF04098 Rad52/22 family double-strand break repair protein PF00551 Formyl transferase PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF00929 Exonuclease PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF00474 Sodium:solute symporter family PF01709 Transcriptional regulator PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF13462 Thioredoxin PF17284 Spermidine synthase tetramerisation domain PF02675 S-adenosylmethionine decarboxylase PF17854 FtsK alpha domain PF09397 Ftsk gamma domain PF01580 FtsK/SpoIIIE family PF00571 CBS domain PF00398 Ribosomal RNA adenine dimethylase PF00571 CBS domain PF01368 DHH family PF02272 DHHA1 domain PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF02163 Peptidase family M50 PF01261 Xylose isomerase-like TIM barrel PF01925 Sulfite exporter TauE/SafE PF00581 Rhodanese-like domain PF00753 Metallo-beta-lactamase superfamily PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF00581 Rhodanese-like domain PF08534 Redoxin PF04293 SpoVR like protein PF04285 Protein of unknown function (DUF444) PF08298 PrkA AAA domain PF06798 PrkA serine protein kinase C-terminal domain PF02631 RecX family PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF04232 Stage V sporulation protein S (SpoVS) PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF00535 Glycosyl transferase family 2 PF17820 PDZ domain PF02163 Peptidase family M50 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF01765 Ribosome recycling factor PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF00696 Amino acid kinase family PF00889 Elongation factor TS PF00318 Ribosomal protein S2 PF00202 Aminotransferase class-III PF00293 NUDIX domain PF00171 Aldehyde dehydrogenase family PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF07736 Chorismate mutase type I PF02585 GlcNAc-PI de-N-acetylase PF01979 Amidohydrolase family PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF02686 Glu-tRNAGln amidotransferase C subunit PF04474 Protein of unknown function (DUF554) PF01266 FAD dependent oxidoreductase PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF01522 Polysaccharide deacetylase PF07690 Major Facilitator Superfamily PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF03275 UDP-galactopyranose mutase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF10531 SLBB domain PF01470 Pyroglutamyl peptidase PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF01430 Hsp33 protein PF00582 Universal stress protein family PF04298 Putative neutral zinc metallopeptidase PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF06470 SMC proteins Flexible Hinge Domain PF02463 RecF/RecN/SMC N terminal domain PF01520 N-acetylmuramoyl-L-alanine amidase PF11741 AMIN domain PF01668 SmpB protein PF00583 Acetyltransferase (GNAT) family PF00795 Carbon-nitrogen hydrolase PF02632 BioY family PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF00162 Phosphoglycerate kinase PF02033 Ribosome-binding factor A PF00146 NADH dehydrogenase PF03061 Thioesterase superfamily PF00202 Aminotransferase class-III PF17876 Cold shock domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF12838 4Fe-4S dicluster domain PF01548 Transposase PF02371 Transposase IS116/IS110/IS902 family PF01548 Transposase PF02371 Transposase IS116/IS110/IS902 family PF01548 Transposase PF02371 Transposase IS116/IS110/IS902 family PF01875 Memo-like protein PF01966 HD domain PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF01121 Dephospho-CoA kinase PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF01467 Cytidylyltransferase-like PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00202 Aminotransferase class-III PF00893 Small Multidrug Resistance protein PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00676 Dehydrogenase E1 component PF00155 Aminotransferase class I and II PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF00121 Triosephosphate isomerase PF00487 Fatty acid desaturase PF02580 D-Tyr-tRNA(Tyr) deacylase PF02645 Uncharacterised protein, DegV family COG1307 PF02645 Uncharacterised protein, DegV family COG1307 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01842 ACT domain PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF00361 Proton-conducting membrane transporter PF00701 Dihydrodipicolinate synthetase family PF01557 Fumarylacetoacetate (FAA) hydrolase family PF00171 Aldehyde dehydrogenase family PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal PF01613 Flavin reductase like domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF03061 Thioesterase superfamily PF00300 Histidine phosphatase superfamily (branch 1) PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF17932 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF13173 AAA domain PF13635 Domain of unknown function (DUF4143) PF04794 YdjC-like protein PF16338 Domain of unknown function (DUF4968) PF17137 Domain of unknown function (DUF5110) PF13802 Galactose mutarotase-like PF01055 Glycosyl hydrolases family 31 PF02929 Beta galactosidase small chain PF16353 Domain of unknown function(DUF4981) PF02836 Glycosyl hydrolases family 2, TIM barrel domain PF02837 Glycosyl hydrolases family 2, sugar binding domain PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF12557 Cob(I)alamin adenosyltransferase N terminal PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PF02654 Cobalamin-5-phosphate synthase PF02277 Phosphoribosyltransferase PF00300 Histidine phosphatase superfamily (branch 1) PF03824 High-affinity nickel-transport protein PF01888 CbiD PF02570 Precorrin-8X methylmutase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01890 Cobalamin synthesis G C-terminus PF11761 Cobalamin biosynthesis central region PF11760 Cobalamin synthesis G N-terminal PF01903 CbiX PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00881 Nitroreductase family PF03186 CobD/Cbib protein PF00155 Aminotransferase class I and II PF07685 CobB/CobQ-like glutamine amidotransferase domain PF00245 Alkaline phosphatase PF01975 Survival protein SurE PF01081 KDPG and KHG aldolase PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF03480 Bacterial extracellular solute-binding protein, family 7 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF00294 pfkB family carbohydrate kinase PF00356 Bacterial regulatory proteins, lacI family PF00528 Binding-protein-dependent transport system inner membrane component PF00232 Glycosyl hydrolase family 1 PF12706 Beta-lactamase superfamily domain PF13847 Methyltransferase domain PF03551 Transcriptional regulator PadR-like family PF01593 Flavin containing amine oxidoreductase PF11066 Protein of unknown function (DUF2867) PF13460 NAD(P)H-binding PF00106 short chain dehydrogenase PF05368 NmrA-like family PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF02607 B12 binding domain PF13411 MerR HTH family regulatory protein PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF00067 Cytochrome P450 PF01593 Flavin containing amine oxidoreductase PF01070 FMN-dependent dehydrogenase PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain PF07963 Prokaryotic N-terminal methylation motif PF00239 Resolvase, N terminal domain PF02195 ParB-like nuclease domain PF02195 ParB-like nuclease domain PF13614 AAA domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF18465 Rieske 3Fe-4S PF00355 Rieske [2Fe-2S] domain PF01625 Peptide methionine sulfoxide reductase PF04343 Protein of unknown function, DUF488 PF07690 Major Facilitator Superfamily PF03009 Glycerophosphoryl diester phosphodiesterase family PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF01266 FAD dependent oxidoreductase PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF01867 CRISPR associated protein Cas1 PF18211 Csm1 subunit domain B PF01966 HD domain PF03787 RAMP superfamily PF09701 CRISPR-associated protein (Cas_Cmr5) PF00270 DEAD/DEAH box helicase PF01131 DNA topoisomerase PF01751 Toprim domain PF17915 Reverse gyrase zinc finger PF08279 HTH domain PF00072 Response regulator receiver domain PF00005 ABC transporter PF08402 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF01555 DNA methylase PF18395 Cas3 C-terminal domain PF18019 HD domain PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) PF09344 CT1975-like protein PF08798 CRISPR associated protein PF01867 CRISPR associated protein Cas1 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) PF03746 LamB/YcsF family PF02634 FdhD/NarQ family PF00384 Molybdopterin oxidoreductase PF00872 Transposase, Mutator family PF03061 Thioesterase superfamily PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF08343 Ribonucleotide reductase N-terminal PF10099 Anti-sigma-K factor rskA PF01497 Periplasmic binding protein PF00005 ABC transporter PF01032 FecCD transport family PF01497 Periplasmic binding protein PF03992 Antibiotic biosynthesis monooxygenase PF09827 CRISPR associated protein Cas2 PF01867 CRISPR associated protein Cas1 PF00561 alpha/beta hydrolase fold PF01557 Fumarylacetoacetate (FAA) hydrolase family PF00171 Aldehyde dehydrogenase family PF01557 Fumarylacetoacetate (FAA) hydrolase family PF01361 Tautomerase enzyme PF01613 Flavin reductase like domain PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF07836 DmpG-like communication domain PF00682 HMGL-like PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation PF01118 Semialdehyde dehydrogenase, NAD binding domain PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily