locus-tag class description TVNIR_0001 PF00664 ABC transporter transmembrane region TVNIR_0001 PF00005 ABC transporter TVNIR_0002 PF13439 Glycosyltransferase Family 4 TVNIR_0002 PF00534 Glycosyl transferases group 1 TVNIR_0006 PF02661 Fic/DOC family TVNIR_0006 PF17841 BID domain of Bartonella effector protein (Bep) TVNIR_0020 PF01695 IstB-like ATP binding protein TVNIR_0046 PF13439 Glycosyltransferase Family 4 TVNIR_0047 PF00535 Glycosyl transferase family 2 TVNIR_0050 PF07963 Prokaryotic N-terminal methylation motif TVNIR_0050 PF00114 Pilin (bacterial filament) TVNIR_0052 PF05685 Putative restriction endonuclease TVNIR_0055 PF00361 Proton-conducting membrane transporter TVNIR_0055 PF13244 Domain of unknown function (DUF4040) TVNIR_0055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TVNIR_0056 PF01370 NAD dependent epimerase/dehydratase family TVNIR_0060 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVNIR_0060 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVNIR_0060 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TVNIR_0061 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVNIR_0061 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVNIR_0061 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVNIR_0061 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVNIR_0062 PF00483 Nucleotidyl transferase TVNIR_0062 PF01050 Mannose-6-phosphate isomerase TVNIR_0065 PF00902 Sec-independent protein translocase protein (TatC) TVNIR_0066 PF02416 mttA/Hcf106 family TVNIR_0067 PF02416 mttA/Hcf106 family TVNIR_0068 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TVNIR_0069 PF00977 Histidine biosynthesis protein TVNIR_0070 PF00977 Histidine biosynthesis protein TVNIR_0071 PF00117 Glutamine amidotransferase class-I TVNIR_0072 PF00475 Imidazoleglycerol-phosphate dehydratase TVNIR_0079 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TVNIR_0079 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TVNIR_0080 PF13649 Methyltransferase domain TVNIR_0081 PF01678 Diaminopimelate epimerase TVNIR_0082 PF04340 Protein of unknown function, DUF484 TVNIR_0083 PF02899 Phage integrase, N-terminal SAM-like domain TVNIR_0083 PF00589 Phage integrase family TVNIR_0084 PF00227 Proteasome subunit TVNIR_0085 PF07724 AAA domain (Cdc48 subfamily) TVNIR_0085 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_0085 PF10431 C-terminal, D2-small domain, of ClpB protein TVNIR_0087 PF01209 ubiE/COQ5 methyltransferase family TVNIR_0089 PF03109 ABC1 family TVNIR_0090 PF03976 Polyphosphate kinase 2 (PPK2) TVNIR_0091 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TVNIR_0091 PF00361 Proton-conducting membrane transporter TVNIR_0091 PF13244 Domain of unknown function (DUF4040) TVNIR_0092 PF00361 Proton-conducting membrane transporter TVNIR_0093 PF00361 Proton-conducting membrane transporter TVNIR_0094 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TVNIR_0095 PF00361 Proton-conducting membrane transporter TVNIR_0095 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TVNIR_0095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TVNIR_0095 PF13244 Domain of unknown function (DUF4040) TVNIR_0097 PF03334 Na+/H+ antiporter subunit TVNIR_0101 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TVNIR_0101 PF06827 Zinc finger found in FPG and IleRS TVNIR_0101 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TVNIR_0105 PF00471 Ribosomal protein L33 TVNIR_0106 PF00830 Ribosomal L28 family TVNIR_0107 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain TVNIR_0107 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain TVNIR_0110 PF00664 ABC transporter transmembrane region TVNIR_0110 PF00005 ABC transporter TVNIR_0110 PF03412 Peptidase C39 family TVNIR_0111 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVNIR_0111 PF00529 HlyD membrane-fusion protein of T1SS TVNIR_0112 PF00072 Response regulator receiver domain TVNIR_0112 PF00196 Bacterial regulatory proteins, luxR family TVNIR_0117 PF09587 Bacterial capsule synthesis protein PGA_cap TVNIR_0122 PF01471 Putative peptidoglycan binding domain TVNIR_0122 PF13401 AAA domain TVNIR_0128 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_0128 PF05230 MASE2 domain TVNIR_0130 PF01322 Cytochrome C' TVNIR_0131 PF00034 Cytochrome c TVNIR_0133 PF04151 Bacterial pre-peptidase C-terminal domain TVNIR_0133 PF00082 Subtilase family TVNIR_0136 PF17946 RecC C-terminal domain TVNIR_0137 PF13361 UvrD-like helicase C-terminal domain TVNIR_0137 PF00580 UvrD/REP helicase N-terminal domain TVNIR_0137 PF12705 PD-(D/E)XK nuclease superfamily TVNIR_0138 PF13538 UvrD-like helicase C-terminal domain TVNIR_0140 PF13847 Methyltransferase domain TVNIR_0143 PF02754 Cysteine-rich domain TVNIR_0144 PF02589 LUD domain TVNIR_0144 PF11870 Domain of unknown function (DUF3390) TVNIR_0144 PF13183 4Fe-4S dicluster domain TVNIR_0145 PF02652 L-lactate permease TVNIR_0146 PF08241 Methyltransferase domain TVNIR_0148 PF04542 Sigma-70 region 2 TVNIR_0148 PF08281 Sigma-70, region 4 TVNIR_0152 PF00270 DEAD/DEAH box helicase TVNIR_0152 PF09369 Domain of unknown function (DUF1998) TVNIR_0152 PF00271 Helicase conserved C-terminal domain TVNIR_0157 PF00891 O-methyltransferase domain TVNIR_0159 PF00348 Polyprenyl synthetase TVNIR_0160 PF00829 Ribosomal prokaryotic L21 protein TVNIR_0161 PF01016 Ribosomal L27 protein TVNIR_0162 PF01926 50S ribosome-binding GTPase TVNIR_0162 PF01018 GTP1/OBG TVNIR_0163 PF00696 Amino acid kinase family TVNIR_0163 PF01472 PUA domain TVNIR_0164 PF01649 Ribosomal protein S20 TVNIR_0166 PF03023 Lipid II flippase MurJ TVNIR_0167 PF06574 FAD synthetase TVNIR_0167 PF01687 Riboflavin kinase TVNIR_0168 PF00133 tRNA synthetases class I (I, L, M and V) TVNIR_0168 PF06827 Zinc finger found in FPG and IleRS TVNIR_0168 PF08264 Anticodon-binding domain of tRNA TVNIR_0169 PF01252 Signal peptidase (SPase) II TVNIR_0170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_0171 PF02401 LytB protein TVNIR_0173 PF00072 Response regulator receiver domain TVNIR_0174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0174 PF01627 Hpt domain TVNIR_0174 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_0174 PF17149 Periplasmic sensor domain found in signal transduction proteins TVNIR_0174 PF00672 HAMP domain TVNIR_0174 PF00072 Response regulator receiver domain TVNIR_0176 PF01609 Transposase DDE domain TVNIR_0176 PF02281 Transposase Tn5 dimerisation domain TVNIR_0176 PF14706 Transposase DNA-binding TVNIR_0182 PF00034 Cytochrome c TVNIR_0183 PF13335 Magnesium chelatase, subunit ChlI C-terminal TVNIR_0183 PF01078 Magnesium chelatase, subunit ChlI TVNIR_0184 PF04380 Membrane fusogenic activity TVNIR_0188 PF00814 Glycoprotease family TVNIR_0189 PF02660 Glycerol-3-phosphate acyltransferase TVNIR_0191 PF00561 alpha/beta hydrolase fold TVNIR_0192 PF08241 Methyltransferase domain TVNIR_0193 PF00115 Cytochrome C and Quinol oxidase polypeptide I TVNIR_0196 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TVNIR_0196 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TVNIR_0197 PF13746 4Fe-4S dicluster domain TVNIR_0197 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TVNIR_0197 PF12801 4Fe-4S binding domain TVNIR_0199 PF00403 Heavy-metal-associated domain TVNIR_0200 PF03597 Cytochrome oxidase maturation protein cbb3-type TVNIR_0205 PF04545 Sigma-70, region 4 TVNIR_0205 PF00140 Sigma-70 factor, region 1.2 TVNIR_0205 PF04542 Sigma-70 region 2 TVNIR_0207 PF00005 ABC transporter TVNIR_0208 PF00448 SRP54-type protein, GTPase domain TVNIR_0208 PF02881 SRP54-type protein, helical bundle domain TVNIR_0209 PF00675 Insulinase (Peptidase family M16) TVNIR_0209 PF05193 Peptidase M16 inactive domain TVNIR_0210 PF05193 Peptidase M16 inactive domain TVNIR_0213 PF00474 Sodium:solute symporter family TVNIR_0215 PF00196 Bacterial regulatory proteins, luxR family TVNIR_0215 PF00072 Response regulator receiver domain TVNIR_0217 PF11756 Nitrous oxide-stimulated promoter TVNIR_0220 PF14718 Soluble lytic murein transglycosylase L domain TVNIR_0220 PF01464 Transglycosylase SLT domain TVNIR_0221 PF00849 RNA pseudouridylate synthase TVNIR_0223 PF00476 DNA polymerase family A TVNIR_0223 PF09281 Taq polymerase, exonuclease TVNIR_0223 PF01367 5'-3' exonuclease, C-terminal SAM fold TVNIR_0223 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TVNIR_0224 PF00056 lactate/malate dehydrogenase, NAD binding domain TVNIR_0224 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TVNIR_0225 PF03949 Malic enzyme, NAD binding domain TVNIR_0225 PF00390 Malic enzyme, N-terminal domain TVNIR_0227 PF01197 Ribosomal protein L31 TVNIR_0228 PF00919 Uncharacterized protein family UPF0004 TVNIR_0228 PF04055 Radical SAM superfamily TVNIR_0228 PF18693 TRAM domain TVNIR_0231 PF00343 Carbohydrate phosphorylase TVNIR_0232 PF02844 Phosphoribosylglycinamide synthetase, N domain TVNIR_0232 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TVNIR_0232 PF02843 Phosphoribosylglycinamide synthetase, C domain TVNIR_0233 PF01808 AICARFT/IMPCHase bienzyme TVNIR_0233 PF02142 MGS-like domain TVNIR_0234 PF13649 Methyltransferase domain TVNIR_0235 PF08241 Methyltransferase domain TVNIR_0236 PF00438 S-adenosylmethionine synthetase, N-terminal domain TVNIR_0236 PF02772 S-adenosylmethionine synthetase, central domain TVNIR_0236 PF02773 S-adenosylmethionine synthetase, C-terminal domain TVNIR_0237 PF04376 Arginine-tRNA-protein transferase, N terminus TVNIR_0237 PF04377 Arginine-tRNA-protein transferase, C terminus TVNIR_0239 PF02574 Homocysteine S-methyltransferase TVNIR_0239 PF00809 Pterin binding enzyme TVNIR_0239 PF02965 Vitamin B12 dependent methionine synthase, activation domain TVNIR_0239 PF02607 B12 binding domain TVNIR_0239 PF02310 B12 binding domain TVNIR_0242 PF00795 Carbon-nitrogen hydrolase TVNIR_0242 PF00583 Acetyltransferase (GNAT) family TVNIR_0250 PF00211 Adenylate and Guanylate cyclase catalytic domain TVNIR_0251 PF00459 Inositol monophosphatase family TVNIR_0253 PF03466 LysR substrate binding domain TVNIR_0253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_0255 PF00005 ABC transporter TVNIR_0255 PF12848 ABC transporter TVNIR_0256 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVNIR_0256 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_0256 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TVNIR_0259 PF02335 Cytochrome c552 TVNIR_0261 PF01578 Cytochrome C assembly protein TVNIR_0261 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TVNIR_0262 PF08534 Redoxin TVNIR_0263 PF03918 Cytochrome C biogenesis protein TVNIR_0265 PF01578 Cytochrome C assembly protein TVNIR_0267 PF03100 CcmE TVNIR_0268 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TVNIR_0268 PF01578 Cytochrome C assembly protein TVNIR_0269 PF08534 Redoxin TVNIR_0271 PF00672 HAMP domain TVNIR_0271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0271 PF07730 Histidine kinase TVNIR_0271 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TVNIR_0272 PF00072 Response regulator receiver domain TVNIR_0272 PF00196 Bacterial regulatory proteins, luxR family TVNIR_0275 PF04262 Glutamate-cysteine ligase TVNIR_0276 PF13533 Biotin-lipoyl like TVNIR_0277 PF00873 AcrB/AcrD/AcrF family TVNIR_0278 PF01641 SelR domain TVNIR_0279 PF00534 Glycosyl transferases group 1 TVNIR_0279 PF13439 Glycosyltransferase Family 4 TVNIR_0288 PF00459 Inositol monophosphatase family TVNIR_0289 PF00293 NUDIX domain TVNIR_0291 PF13419 Haloacid dehalogenase-like hydrolase TVNIR_0295 PF02325 YGGT family TVNIR_0297 PF03807 NADP oxidoreductase coenzyme F420-dependent TVNIR_0297 PF14748 Pyrroline-5-carboxylate reductase dimerisation TVNIR_0298 PF01168 Alanine racemase, N-terminal domain TVNIR_0299 PF00437 Type II/IV secretion system protein TVNIR_0300 PF00437 Type II/IV secretion system protein TVNIR_0301 PF00437 Type II/IV secretion system protein TVNIR_0302 PF01979 Amidohydrolase family TVNIR_0303 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVNIR_0303 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVNIR_0304 PF00156 Phosphoribosyl transferase domain TVNIR_0305 PF03652 Holliday junction resolvase TVNIR_0306 PF02622 Uncharacterized ACR, COG1678 TVNIR_0307 PF03544 Gram-negative bacterial TonB protein C-terminal TVNIR_0310 PF02424 ApbE family TVNIR_0311 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TVNIR_0311 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TVNIR_0320 PF00330 Aconitase family (aconitate hydratase) TVNIR_0324 PF00581 Rhodanese-like domain TVNIR_0324 PF00753 Metallo-beta-lactamase superfamily TVNIR_0331 PF04454 Encapsulating protein for peroxidase TVNIR_0332 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_0332 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVNIR_0336 PF04452 RNA methyltransferase TVNIR_0337 PF02219 Methylenetetrahydrofolate reductase TVNIR_0338 PF05221 S-adenosyl-L-homocysteine hydrolase TVNIR_0338 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TVNIR_0339 PF00438 S-adenosylmethionine synthetase, N-terminal domain TVNIR_0339 PF02772 S-adenosylmethionine synthetase, central domain TVNIR_0339 PF02773 S-adenosylmethionine synthetase, C-terminal domain TVNIR_0340 PF00456 Transketolase, thiamine diphosphate binding domain TVNIR_0340 PF02780 Transketolase, C-terminal domain TVNIR_0340 PF02779 Transketolase, pyrimidine binding domain TVNIR_0341 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TVNIR_0341 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TVNIR_0342 PF00162 Phosphoglycerate kinase TVNIR_0343 PF02887 Pyruvate kinase, alpha/beta domain TVNIR_0343 PF00224 Pyruvate kinase, barrel domain TVNIR_0344 PF01116 Fructose-bisphosphate aldolase class-II TVNIR_0346 PF01259 SAICAR synthetase TVNIR_0347 PF00731 AIR carboxylase TVNIR_0348 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TVNIR_0348 PF02222 ATP-grasp domain TVNIR_0349 PF05175 Methyltransferase small domain TVNIR_0351 PF00034 Cytochrome c TVNIR_0352 PF00834 Ribulose-phosphate 3 epimerase family TVNIR_0353 PF13419 Haloacid dehalogenase-like hydrolase TVNIR_0354 PF04715 Anthranilate synthase component I, N terminal region TVNIR_0354 PF00425 chorismate binding enzyme TVNIR_0356 PF02082 Transcriptional regulator TVNIR_0358 PF00117 Glutamine amidotransferase class-I TVNIR_0359 PF00591 Glycosyl transferase family, a/b domain TVNIR_0359 PF02885 Glycosyl transferase family, helical bundle domain TVNIR_0360 PF00218 Indole-3-glycerol phosphate synthase TVNIR_0361 PF00027 Cyclic nucleotide-binding domain TVNIR_0361 PF13545 Crp-like helix-turn-helix domain TVNIR_0362 PF02566 OsmC-like protein TVNIR_0363 PF02675 S-adenosylmethionine decarboxylase TVNIR_0364 PF03232 Ubiquinone biosynthesis protein COQ7 TVNIR_0372 PF04542 Sigma-70 region 2 TVNIR_0372 PF08281 Sigma-70, region 4 TVNIR_0375 PF00483 Nucleotidyl transferase TVNIR_0376 PF01636 Phosphotransferase enzyme family TVNIR_0377 PF00149 Calcineurin-like phosphoesterase TVNIR_0378 PF01258 Prokaryotic dksA/traR C4-type zinc finger TVNIR_0379 PF17284 Spermidine synthase tetramerisation domain TVNIR_0380 PF17810 Arginine decarboxylase helical bundle domain TVNIR_0380 PF17944 Arginine decarboxylase C-terminal helical extension TVNIR_0380 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TVNIR_0381 PF05166 YcgL domain TVNIR_0383 PF00114 Pilin (bacterial filament) TVNIR_0383 PF07963 Prokaryotic N-terminal methylation motif TVNIR_0390 PF00696 Amino acid kinase family TVNIR_0393 PF00692 dUTPase TVNIR_0394 PF02441 Flavoprotein TVNIR_0394 PF04127 DNA / pantothenate metabolism flavoprotein TVNIR_0395 PF04002 RadC-like JAB domain TVNIR_0396 PF00465 Iron-containing alcohol dehydrogenase TVNIR_0397 PF13686 DsrE/DsrF/DrsH-like family TVNIR_0402 PF00155 Aminotransferase class I and II TVNIR_0403 PF04055 Radical SAM superfamily TVNIR_0403 PF06968 Biotin and Thiamin Synthesis associated domain TVNIR_0405 PF00156 Phosphoribosyl transferase domain TVNIR_0406 PF01040 UbiA prenyltransferase family TVNIR_0407 PF13488 Glycine zipper TVNIR_0407 PF00691 OmpA family TVNIR_0408 PF01488 Shikimate / quinate 5-dehydrogenase TVNIR_0408 PF08501 Shikimate dehydrogenase substrate binding domain TVNIR_0408 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TVNIR_0409 PF00490 Delta-aminolevulinic acid dehydratase TVNIR_0410 PF01218 Coproporphyrinogen III oxidase TVNIR_0412 PF01300 Telomere recombination TVNIR_0413 PF01131 DNA topoisomerase TVNIR_0413 PF01751 Toprim domain TVNIR_0413 PF13368 Topoisomerase C-terminal repeat TVNIR_0414 PF04361 Protein of unknown function (DUF494) TVNIR_0415 PF02481 DNA recombination-mediator protein A TVNIR_0415 PF17782 DprA winged helix domain TVNIR_0417 PF01327 Polypeptide deformylase TVNIR_0418 PF00551 Formyl transferase TVNIR_0418 PF02911 Formyl transferase, C-terminal domain TVNIR_0419 PF01029 NusB family TVNIR_0419 PF01189 16S rRNA methyltransferase RsmB/F TVNIR_0421 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_0421 PF00989 PAS fold TVNIR_0421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0421 PF00672 HAMP domain TVNIR_0422 PF00158 Sigma-54 interaction domain TVNIR_0422 PF00072 Response regulator receiver domain TVNIR_0422 PF02954 Bacterial regulatory protein, Fis family TVNIR_0423 PF02254 TrkA-N domain TVNIR_0423 PF02080 TrkA-C domain TVNIR_0428 PF07722 Peptidase C26 TVNIR_0429 PF01625 Peptide methionine sulfoxide reductase TVNIR_0431 PF02152 Dihydroneopterin aldolase TVNIR_0432 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TVNIR_0433 PF00571 CBS domain TVNIR_0433 PF00478 IMP dehydrogenase / GMP reductase domain TVNIR_0435 PF00543 Nitrogen regulatory protein P-II TVNIR_0436 PF00909 Ammonium Transporter Family TVNIR_0437 PF00005 ABC transporter TVNIR_0437 PF02687 FtsX-like permease family TVNIR_0437 PF12704 MacB-like periplasmic core domain TVNIR_0438 PF03649 Uncharacterised protein family (UPF0014) TVNIR_0447 PF00440 Bacterial regulatory proteins, tetR family TVNIR_0447 PF16925 Tetracyclin repressor-like, C-terminal domain TVNIR_0449 PF00696 Amino acid kinase family TVNIR_0449 PF00583 Acetyltransferase (GNAT) family TVNIR_0452 PF08443 RimK-like ATP-grasp domain TVNIR_0452 PF18030 RimK PreATP-grasp domain TVNIR_0452 PF02080 TrkA-C domain TVNIR_0454 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_0454 PF03466 LysR substrate binding domain TVNIR_0455 PF12795 Mechanosensitive ion channel porin domain TVNIR_0455 PF12794 Mechanosensitive ion channel inner membrane domain 1 TVNIR_0455 PF00924 Mechanosensitive ion channel TVNIR_0459 PF00920 Dehydratase family TVNIR_0460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_0463 PF02080 TrkA-C domain TVNIR_0463 PF03471 Transporter associated domain TVNIR_0463 PF00999 Sodium/hydrogen exchanger family TVNIR_0464 PF13361 UvrD-like helicase C-terminal domain TVNIR_0464 PF00580 UvrD/REP helicase N-terminal domain TVNIR_0466 PF01510 N-acetylmuramoyl-L-alanine amidase TVNIR_0469 PF02954 Bacterial regulatory protein, Fis family TVNIR_0470 PF01207 Dihydrouridine synthase (Dus) TVNIR_0473 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TVNIR_0473 PF00289 Biotin carboxylase, N-terminal domain TVNIR_0473 PF02785 Biotin carboxylase C-terminal domain TVNIR_0474 PF00364 Biotin-requiring enzyme TVNIR_0476 PF08534 Redoxin TVNIR_0477 PF02683 Cytochrome C biogenesis protein transmembrane region TVNIR_0477 PF11412 Disulphide bond corrector protein DsbC TVNIR_0478 PF03091 CutA1 divalent ion tolerance protein TVNIR_0482 PF04186 FxsA cytoplasmic membrane protein TVNIR_0483 PF00166 Chaperonin 10 Kd subunit TVNIR_0484 PF00118 TCP-1/cpn60 chaperonin family TVNIR_0486 PF05736 OprF membrane domain TVNIR_0486 PF00691 OmpA family TVNIR_0487 PF00158 Sigma-54 interaction domain TVNIR_0487 PF02954 Bacterial regulatory protein, Fis family TVNIR_0487 PF00072 Response regulator receiver domain TVNIR_0491 PF00578 AhpC/TSA family TVNIR_0493 PF00005 ABC transporter TVNIR_0493 PF02687 FtsX-like permease family TVNIR_0493 PF12704 MacB-like periplasmic core domain TVNIR_0496 PF04357 TamB, inner membrane protein subunit of TAM complex TVNIR_0497 PF17243 POTRA domain TamA domain 1 TVNIR_0497 PF01103 Surface antigen TVNIR_0497 PF07244 Surface antigen variable number repeat TVNIR_0499 PF00005 ABC transporter TVNIR_0499 PF08402 TOBE domain TVNIR_0500 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_0501 PF13416 Bacterial extracellular solute-binding protein TVNIR_0502 PF08335 GlnD PII-uridylyltransferase TVNIR_0502 PF03710 Glutamate-ammonia ligase adenylyltransferase TVNIR_0503 PF01063 Amino-transferase class IV TVNIR_0505 PF05958 tRNA (Uracil-5-)-methyltransferase TVNIR_0508 PF05230 MASE2 domain TVNIR_0508 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_0517 PF01381 Helix-turn-helix TVNIR_0517 PF07883 Cupin domain TVNIR_0519 PF01850 PIN domain TVNIR_0522 PF01381 Helix-turn-helix TVNIR_0532 PF00114 Pilin (bacterial filament) TVNIR_0532 PF07963 Prokaryotic N-terminal methylation motif TVNIR_0537 PF00072 Response regulator receiver domain TVNIR_0537 PF04397 LytTr DNA-binding domain TVNIR_0538 PF07694 5TMR of 5TMR-LYT TVNIR_0538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0538 PF06580 Histidine kinase TVNIR_0540 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_0540 PF08448 PAS fold TVNIR_0541 PF03781 Sulfatase-modifying factor enzyme 1 TVNIR_0542 PF00578 AhpC/TSA family TVNIR_0543 PF02445 Quinolinate synthetase A protein TVNIR_0549 PF00175 Oxidoreductase NAD-binding domain TVNIR_0549 PF00970 Oxidoreductase FAD-binding domain TVNIR_0551 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_0551 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TVNIR_0551 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVNIR_0556 PF00072 Response regulator receiver domain TVNIR_0556 PF00486 Transcriptional regulatory protein, C terminal TVNIR_0557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0557 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_0557 PF07689 KaiB domain TVNIR_0558 PF01266 FAD dependent oxidoreductase TVNIR_0562 PF08443 RimK-like ATP-grasp domain TVNIR_0562 PF18030 RimK PreATP-grasp domain TVNIR_0563 PF03279 Bacterial lipid A biosynthesis acyltransferase TVNIR_0566 PF08241 Methyltransferase domain TVNIR_0567 PF00664 ABC transporter transmembrane region TVNIR_0567 PF00005 ABC transporter TVNIR_0569 PF00916 Sulfate permease family TVNIR_0569 PF01740 STAS domain TVNIR_0571 PF12792 CSS motif domain associated with EAL TVNIR_0571 PF00563 EAL domain TVNIR_0575 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TVNIR_0576 PF00106 short chain dehydrogenase TVNIR_0579 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TVNIR_0584 PF07670 Nucleoside recognition TVNIR_0584 PF02421 Ferrous iron transport protein B TVNIR_0584 PF17910 FeoB cytosolic helical domain TVNIR_0584 PF07664 Ferrous iron transport protein B C terminus TVNIR_0584 PF04023 FeoA domain TVNIR_0593 PF00005 ABC transporter TVNIR_0596 PF07715 TonB-dependent Receptor Plug Domain TVNIR_0596 PF00593 TonB dependent receptor TVNIR_0597 PF00005 ABC transporter TVNIR_0598 PF01032 FecCD transport family TVNIR_0599 PF01497 Periplasmic binding protein TVNIR_0600 PF05171 Haemin-degrading HemS.ChuX domain TVNIR_0602 PF07715 TonB-dependent Receptor Plug Domain TVNIR_0602 PF00593 TonB dependent receptor TVNIR_0613 PF04898 Glutamate synthase central domain TVNIR_0613 PF01645 Conserved region in glutamate synthase TVNIR_0613 PF01493 GXGXG motif TVNIR_0613 PF00310 Glutamine amidotransferases class-II TVNIR_0614 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TVNIR_0614 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_0616 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TVNIR_0616 PF00753 Metallo-beta-lactamase superfamily TVNIR_0616 PF10996 Beta-Casp domain TVNIR_0623 PF04221 RelB antitoxin TVNIR_0625 PF02350 UDP-N-acetylglucosamine 2-epimerase TVNIR_0626 PF04221 RelB antitoxin TVNIR_0628 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TVNIR_0628 PF01381 Helix-turn-helix TVNIR_0631 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TVNIR_0634 PF01370 NAD dependent epimerase/dehydratase family TVNIR_0637 PF04221 RelB antitoxin TVNIR_0639 PF01850 PIN domain TVNIR_0641 PF01370 NAD dependent epimerase/dehydratase family TVNIR_0650 PF05973 Phage derived protein Gp49-like (DUF891) TVNIR_0653 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TVNIR_0659 PF04221 RelB antitoxin TVNIR_0671 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVNIR_0671 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVNIR_0671 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TVNIR_0674 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TVNIR_0674 PF01381 Helix-turn-helix TVNIR_0677 PF01370 NAD dependent epimerase/dehydratase family TVNIR_0680 PF16363 GDP-mannose 4,6 dehydratase TVNIR_0681 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TVNIR_0681 PF00753 Metallo-beta-lactamase superfamily TVNIR_0681 PF10996 Beta-Casp domain TVNIR_0686 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TVNIR_0686 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVNIR_0686 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVNIR_0687 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TVNIR_0687 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TVNIR_0689 PF00132 Bacterial transferase hexapeptide (six repeats) TVNIR_0691 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TVNIR_0699 PF02350 UDP-N-acetylglucosamine 2-epimerase TVNIR_0703 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TVNIR_0709 PF02698 DUF218 domain TVNIR_0711 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TVNIR_0728 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA TVNIR_0732 PF02698 DUF218 domain TVNIR_0735 PF02698 DUF218 domain TVNIR_0742 PF02698 DUF218 domain TVNIR_0746 PF02698 DUF218 domain TVNIR_0749 PF09386 Antitoxin ParD TVNIR_0754 PF01609 Transposase DDE domain TVNIR_0754 PF14706 Transposase DNA-binding TVNIR_0754 PF02281 Transposase Tn5 dimerisation domain TVNIR_0763 PF02698 DUF218 domain TVNIR_0766 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TVNIR_0771 PF01850 PIN domain TVNIR_0773 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TVNIR_0774 PF02719 Polysaccharide biosynthesis protein TVNIR_0776 PF02397 Bacterial sugar transferase TVNIR_0777 PF01381 Helix-turn-helix TVNIR_0783 PF01471 Putative peptidoglycan binding domain TVNIR_0783 PF13401 AAA domain TVNIR_0789 PF12728 Helix-turn-helix domain TVNIR_0796 PF00583 Acetyltransferase (GNAT) family TVNIR_0801 PF00873 AcrB/AcrD/AcrF family TVNIR_0804 PF00672 HAMP domain TVNIR_0804 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_0804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0805 PF00486 Transcriptional regulatory protein, C terminal TVNIR_0805 PF00072 Response regulator receiver domain TVNIR_0807 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVNIR_0807 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_0808 PF08534 Redoxin TVNIR_0808 PF00462 Glutaredoxin TVNIR_0809 PF12169 DNA polymerase III subunits gamma and tau domain III TVNIR_0809 PF12170 DNA polymerase III tau subunit V interacting with alpha TVNIR_0809 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding TVNIR_0810 PF02575 YbaB/EbfC DNA-binding family TVNIR_0811 PF13662 Toprim domain TVNIR_0811 PF02132 RecR protein TVNIR_0812 PF01230 HIT domain TVNIR_0814 PF03193 RsgA GTPase TVNIR_0815 PF01329 Pterin 4 alpha carbinolamine dehydratase TVNIR_0817 PF00929 Exonuclease TVNIR_0818 PF02910 Fumarate reductase flavoprotein C-term TVNIR_0818 PF00890 FAD binding domain TVNIR_0819 PF08281 Sigma-70, region 4 TVNIR_0819 PF04542 Sigma-70 region 2 TVNIR_0820 PF03873 Anti sigma-E protein RseA, C-terminal domain TVNIR_0820 PF03872 Anti sigma-E protein RseA, N-terminal domain TVNIR_0823 PF17820 PDZ domain TVNIR_0823 PF13180 PDZ domain TVNIR_0825 PF00009 Elongation factor Tu GTP binding domain TVNIR_0825 PF00679 Elongation factor G C-terminus TVNIR_0825 PF06421 GTP-binding protein LepA C-terminus TVNIR_0826 PF10502 Signal peptidase, peptidase S26 TVNIR_0828 PF00035 Double-stranded RNA binding motif TVNIR_0828 PF14622 Ribonuclease-III-like TVNIR_0829 PF01926 50S ribosome-binding GTPase TVNIR_0829 PF07650 KH domain TVNIR_0830 PF11967 Recombination protein O N terminal TVNIR_0830 PF02565 Recombination protein O C terminal TVNIR_0831 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TVNIR_0832 PF01648 4'-phosphopantetheinyl transferase superfamily TVNIR_0833 PF00291 Pyridoxal-phosphate dependent enzyme TVNIR_0835 PF05958 tRNA (Uracil-5-)-methyltransferase TVNIR_0836 PF01618 MotA/TolQ/ExbB proton channel family TVNIR_0837 PF02472 Biopolymer transport protein ExbD/TolR TVNIR_0838 PF00005 ABC transporter TVNIR_0838 PF00664 ABC transporter transmembrane region TVNIR_0840 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TVNIR_0841 PF03966 Trm112p-like protein TVNIR_0843 PF02348 Cytidylyltransferase TVNIR_0846 PF18331 PKHD-type hydroxylase C-terminal domain TVNIR_0846 PF13640 2OG-Fe(II) oxygenase superfamily TVNIR_0847 PF01521 Iron-sulphur cluster biosynthesis TVNIR_0848 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TVNIR_0848 PF07685 CobB/CobQ-like glutamine amidotransferase domain TVNIR_0850 PF13247 4Fe-4S dicluster domain TVNIR_0852 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TVNIR_0852 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TVNIR_0852 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_0853 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVNIR_0853 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVNIR_0855 PF04358 DsrC like protein TVNIR_0857 PF02635 DsrE/DsrF-like family TVNIR_0858 PF02635 DsrE/DsrF-like family TVNIR_0859 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TVNIR_0859 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVNIR_0860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TVNIR_0860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVNIR_0865 PF04358 DsrC like protein TVNIR_0869 PF00588 SpoU rRNA Methylase family TVNIR_0870 PF00132 Bacterial transferase hexapeptide (six repeats) TVNIR_0871 PF02082 Transcriptional regulator TVNIR_0872 PF00334 Nucleoside diphosphate kinase TVNIR_0873 PF04055 Radical SAM superfamily TVNIR_0876 PF13393 Histidyl-tRNA synthetase TVNIR_0876 PF03129 Anticodon binding domain TVNIR_0878 PF13360 PQQ-like domain TVNIR_0879 PF01926 50S ribosome-binding GTPase TVNIR_0879 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TVNIR_0880 PF00155 Aminotransferase class I and II TVNIR_0881 PF00501 AMP-binding enzyme TVNIR_0882 PF03824 High-affinity nickel-transport protein TVNIR_0884 PF09190 DALR domain TVNIR_0884 PF01406 tRNA synthetases class I (C) catalytic domain TVNIR_0885 PF01502 Phosphoribosyl-AMP cyclohydrolase TVNIR_0886 PF00563 EAL domain TVNIR_0886 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_0886 PF03707 Bacterial signalling protein N terminal repeat TVNIR_0887 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family TVNIR_0888 PF01925 Sulfite exporter TauE/SafE TVNIR_0889 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_0889 PF08448 PAS fold TVNIR_0890 PF00970 Oxidoreductase FAD-binding domain TVNIR_0890 PF00175 Oxidoreductase NAD-binding domain TVNIR_0891 PF00072 Response regulator receiver domain TVNIR_0891 PF00486 Transcriptional regulatory protein, C terminal TVNIR_0892 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_0892 PF11808 Phosphate regulon sensor protein PhoR TVNIR_0892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0892 PF00989 PAS fold TVNIR_0894 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TVNIR_0894 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_0896 PF12849 PBP superfamily domain TVNIR_0897 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_0898 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_0899 PF00005 ABC transporter TVNIR_0900 PF01895 PhoU domain TVNIR_0901 PF00149 Calcineurin-like phosphoesterase TVNIR_0901 PF02872 5'-nucleotidase, C-terminal domain TVNIR_0902 PF08241 Methyltransferase domain TVNIR_0903 PF00343 Carbohydrate phosphorylase TVNIR_0903 PF11897 Protein of unknown function (DUF3417) TVNIR_0907 PF05726 Pirin C-terminal cupin domain TVNIR_0907 PF02678 Pirin TVNIR_0908 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB TVNIR_0909 PF01381 Helix-turn-helix TVNIR_0911 PF00665 Integrase core domain TVNIR_0912 PF01695 IstB-like ATP binding protein TVNIR_0913 PF02899 Phage integrase, N-terminal SAM-like domain TVNIR_0913 PF00589 Phage integrase family TVNIR_0916 PF00589 Phage integrase family TVNIR_0916 PF02899 Phage integrase, N-terminal SAM-like domain TVNIR_0917 PF01695 IstB-like ATP binding protein TVNIR_0923 PF00271 Helicase conserved C-terminal domain TVNIR_0923 PF04851 Type III restriction enzyme, res subunit TVNIR_0924 PF04555 Restriction endonuclease XhoI TVNIR_0933 PF01850 PIN domain TVNIR_0934 PF00586 AIR synthase related protein, N-terminal domain TVNIR_0934 PF02769 AIR synthase related protein, C-terminal domain TVNIR_0935 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_0936 PF00005 ABC transporter TVNIR_0938 PF03144 Elongation factor Tu domain 2 TVNIR_0938 PF09106 Elongation factor SelB, winged helix TVNIR_0938 PF09107 Elongation factor SelB, winged helix TVNIR_0938 PF00009 Elongation factor Tu GTP binding domain TVNIR_0939 PF12390 Selenocysteine synthase N terminal TVNIR_0939 PF03841 L-seryl-tRNA selenium transferase TVNIR_0943 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_0948 PF13247 4Fe-4S dicluster domain TVNIR_0948 PF00037 4Fe-4S binding domain TVNIR_0949 PF00384 Molybdopterin oxidoreductase TVNIR_0949 PF01568 Molydopterin dinucleotide binding domain TVNIR_0949 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_0951 PF05685 Putative restriction endonuclease TVNIR_0953 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_0953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_0954 PF02954 Bacterial regulatory protein, Fis family TVNIR_0954 PF00072 Response regulator receiver domain TVNIR_0954 PF00158 Sigma-54 interaction domain TVNIR_0955 PF00581 Rhodanese-like domain TVNIR_0961 PF00571 CBS domain TVNIR_0961 PF00478 IMP dehydrogenase / GMP reductase domain TVNIR_0962 PF02040 Arsenical pump membrane protein TVNIR_0968 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_0968 PF03459 TOBE domain TVNIR_0970 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_0971 PF03459 TOBE domain TVNIR_0971 PF00005 ABC transporter TVNIR_0976 PF00037 4Fe-4S binding domain TVNIR_0976 PF13247 4Fe-4S dicluster domain TVNIR_0977 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_0977 PF00384 Molybdopterin oxidoreductase TVNIR_0977 PF01568 Molydopterin dinucleotide binding domain TVNIR_0978 PF04216 Protein involved in formate dehydrogenase formation TVNIR_0979 PF01292 Prokaryotic cytochrome b561 TVNIR_0980 PF13247 4Fe-4S dicluster domain TVNIR_0980 PF09163 Formate dehydrogenase N, transmembrane TVNIR_0981 PF00384 Molybdopterin oxidoreductase TVNIR_0981 PF01568 Molydopterin dinucleotide binding domain TVNIR_0981 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_0983 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_0983 PF00384 Molybdopterin oxidoreductase TVNIR_0983 PF01568 Molydopterin dinucleotide binding domain TVNIR_0987 PF00391 PEP-utilising enzyme, mobile domain TVNIR_0987 PF02887 Pyruvate kinase, alpha/beta domain TVNIR_0987 PF00224 Pyruvate kinase, barrel domain TVNIR_0988 PF13439 Glycosyltransferase Family 4 TVNIR_0988 PF00534 Glycosyl transferases group 1 TVNIR_0990 PF00885 6,7-dimethyl-8-ribityllumazine synthase TVNIR_0991 PF01029 NusB family TVNIR_0992 PF02769 AIR synthase related protein, C-terminal domain TVNIR_0992 PF00586 AIR synthase related protein, N-terminal domain TVNIR_0996 PF04608 Phosphatidylglycerophosphatase A TVNIR_0997 PF13609 Gram-negative porin TVNIR_1005 PF01645 Conserved region in glutamate synthase TVNIR_1006 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TVNIR_1006 PF00205 Thiamine pyrophosphate enzyme, central domain TVNIR_1006 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TVNIR_1007 PF00171 Aldehyde dehydrogenase family TVNIR_1013 PF01869 BadF/BadG/BcrA/BcrD ATPase family TVNIR_1020 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_1020 PF00072 Response regulator receiver domain TVNIR_1021 PF02311 AraC-like ligand binding domain TVNIR_1021 PF12833 Helix-turn-helix domain TVNIR_1024 PF13686 DsrE/DsrF/DrsH-like family TVNIR_1028 PF05114 Protein of unknown function (DUF692) TVNIR_1034 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TVNIR_1034 PF09317 Domain of unknown function (DUF1974) TVNIR_1034 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TVNIR_1034 PF02770 Acyl-CoA dehydrogenase, middle domain TVNIR_1035 PF00108 Thiolase, N-terminal domain TVNIR_1035 PF02803 Thiolase, C-terminal domain TVNIR_1036 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TVNIR_1036 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TVNIR_1036 PF00378 Enoyl-CoA hydratase/isomerase TVNIR_1037 PF00501 AMP-binding enzyme TVNIR_1039 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TVNIR_1040 PF00291 Pyridoxal-phosphate dependent enzyme TVNIR_1040 PF00585 C-terminal regulatory domain of Threonine dehydratase TVNIR_1043 PF02384 N-6 DNA Methylase TVNIR_1045 PF01420 Type I restriction modification DNA specificity domain TVNIR_1052 PF00672 HAMP domain TVNIR_1052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_1052 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_1056 PF01812 5-formyltetrahydrofolate cyclo-ligase family TVNIR_1057 PF05164 Cell division protein ZapA TVNIR_1060 PF03695 Uncharacterised protein family (UPF0149) TVNIR_1061 PF00557 Metallopeptidase family M24 TVNIR_1061 PF05195 Aminopeptidase P, N-terminal domain TVNIR_1062 PF01494 FAD binding domain TVNIR_1063 PF01494 FAD binding domain TVNIR_1064 PF08669 Glycine cleavage T-protein C-terminal barrel domain TVNIR_1064 PF01571 Aminomethyltransferase folate-binding domain TVNIR_1065 PF01597 Glycine cleavage H-protein TVNIR_1066 PF02347 Glycine cleavage system P-protein TVNIR_1068 PF02347 Glycine cleavage system P-protein TVNIR_1069 PF01219 Prokaryotic diacylglycerol kinase TVNIR_1072 PF00005 ABC transporter TVNIR_1073 PF00950 ABC 3 transport family TVNIR_1075 PF00186 Dihydrofolate reductase TVNIR_1076 PF00303 Thymidylate synthase TVNIR_1077 PF01790 Prolipoprotein diacylglyceryl transferase TVNIR_1078 PF03190 Protein of unknown function, DUF255 TVNIR_1087 PF10005 zinc-ribbon domain TVNIR_1087 PF15887 Putative zinc-binding metallo-peptidase TVNIR_1091 PF01434 Peptidase family M41 TVNIR_1091 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_1091 PF06480 FtsH Extracellular TVNIR_1091 PF17862 AAA+ lid domain TVNIR_1094 PF03636 Glycosyl hydrolase family 65, N-terminal domain TVNIR_1094 PF03632 Glycosyl hydrolase family 65 central catalytic domain TVNIR_1094 PF03633 Glycosyl hydrolase family 65, C-terminal domain TVNIR_1094 PF02358 Trehalose-phosphatase TVNIR_1095 PF13193 AMP-binding enzyme C-terminal domain TVNIR_1095 PF00501 AMP-binding enzyme TVNIR_1097 PF01734 Patatin-like phospholipase TVNIR_1100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_1100 PF00672 HAMP domain TVNIR_1100 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_1101 PF00072 Response regulator receiver domain TVNIR_1101 PF00486 Transcriptional regulatory protein, C terminal TVNIR_1106 PF07732 Multicopper oxidase TVNIR_1106 PF00394 Multicopper oxidase TVNIR_1106 PF07731 Multicopper oxidase TVNIR_1110 PF01230 HIT domain TVNIR_1111 PF02163 Peptidase family M50 TVNIR_1111 PF00571 CBS domain TVNIR_1112 PF00723 Glycosyl hydrolases family 15 TVNIR_1113 PF00128 Alpha amylase, catalytic domain TVNIR_1113 PF11941 Domain of unknown function (DUF3459) TVNIR_1114 PF00128 Alpha amylase, catalytic domain TVNIR_1115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TVNIR_1115 PF00128 Alpha amylase, catalytic domain TVNIR_1118 PF00128 Alpha amylase, catalytic domain TVNIR_1118 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TVNIR_1119 PF01568 Molydopterin dinucleotide binding domain TVNIR_1119 PF00384 Molybdopterin oxidoreductase TVNIR_1120 PF13247 4Fe-4S dicluster domain TVNIR_1121 PF09459 Ethylbenzene dehydrogenase TVNIR_1122 PF00027 Cyclic nucleotide-binding domain TVNIR_1122 PF13545 Crp-like helix-turn-helix domain TVNIR_1129 PF00589 Phage integrase family TVNIR_1129 PF13495 Phage integrase, N-terminal SAM-like domain TVNIR_1130 PF00589 Phage integrase family TVNIR_1130 PF13495 Phage integrase, N-terminal SAM-like domain TVNIR_1131 PF01348 Type II intron maturase TVNIR_1131 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) TVNIR_1132 PF00561 alpha/beta hydrolase fold TVNIR_1147 PF00580 UvrD/REP helicase N-terminal domain TVNIR_1147 PF13361 UvrD-like helicase C-terminal domain TVNIR_1153 PF05685 Putative restriction endonuclease TVNIR_1154 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system TVNIR_1159 PF03600 Citrate transporter TVNIR_1159 PF02080 TrkA-C domain TVNIR_1160 PF00583 Acetyltransferase (GNAT) family TVNIR_1162 PF00535 Glycosyl transferase family 2 TVNIR_1170 PF03695 Uncharacterised protein family (UPF0149) TVNIR_1170 PF02810 SEC-C motif TVNIR_1171 PF01979 Amidohydrolase family TVNIR_1175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVNIR_1175 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_1178 PF05872 Bacterial protein of unknown function (DUF853) TVNIR_1183 PF02577 Bifunctional nuclease TVNIR_1184 PF00106 short chain dehydrogenase TVNIR_1185 PF01661 Macro domain TVNIR_1186 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TVNIR_1186 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TVNIR_1190 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_1191 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_1192 PF08402 TOBE domain TVNIR_1192 PF00005 ABC transporter TVNIR_1193 PF02678 Pirin TVNIR_1193 PF05726 Pirin C-terminal cupin domain TVNIR_1195 PF00483 Nucleotidyl transferase TVNIR_1199 PF00873 AcrB/AcrD/AcrF family TVNIR_1200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVNIR_1202 PF01734 Patatin-like phospholipase TVNIR_1203 PF00226 DnaJ domain TVNIR_1203 PF01556 DnaJ C terminal domain TVNIR_1203 PF00684 DnaJ central domain TVNIR_1205 PF00733 Asparagine synthase TVNIR_1205 PF13537 Glutamine amidotransferase domain TVNIR_1207 PF00578 AhpC/TSA family TVNIR_1207 PF10417 C-terminal domain of 1-Cys peroxiredoxin TVNIR_1208 PF01037 Lrp/AsnC ligand binding domain TVNIR_1210 PF00682 HMGL-like TVNIR_1210 PF08502 LeuA allosteric (dimerisation) domain TVNIR_1211 PF00330 Aconitase family (aconitate hydratase) TVNIR_1212 PF00694 Aconitase C-terminal domain TVNIR_1213 PF00180 Isocitrate/isopropylmalate dehydrogenase TVNIR_1214 PF01118 Semialdehyde dehydrogenase, NAD binding domain TVNIR_1214 PF02774 Semialdehyde dehydrogenase, dimerisation domain TVNIR_1218 PF01416 tRNA pseudouridine synthase TVNIR_1219 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TVNIR_1220 PF00291 Pyridoxal-phosphate dependent enzyme TVNIR_1221 PF00290 Tryptophan synthase alpha chain TVNIR_1222 PF17848 Acetyl-coA carboxylase zinc finger domain TVNIR_1222 PF01039 Carboxyl transferase domain TVNIR_1223 PF08245 Mur ligase middle domain TVNIR_1223 PF02875 Mur ligase family, glutamate ligase domain TVNIR_1225 PF02674 Colicin V production protein TVNIR_1226 PF00156 Phosphoribosyl transferase domain TVNIR_1227 PF03734 L,D-transpeptidase catalytic domain TVNIR_1227 PF17969 L,D-transpeptidase C-terminal domain TVNIR_1228 PF02082 Transcriptional regulator TVNIR_1229 PF13559 Domain of unknown function (DUF4129) TVNIR_1229 PF11992 Domain of unknown function (DUF3488) TVNIR_1229 PF01841 Transglutaminase-like superfamily TVNIR_1231 PF07726 ATPase family associated with various cellular activities (AAA) TVNIR_1231 PF17863 AAA lid domain TVNIR_1232 PF02405 Permease MlaE TVNIR_1233 PF00005 ABC transporter TVNIR_1234 PF02470 MlaD protein TVNIR_1236 PF14437 MafB19-like deaminase TVNIR_1237 PF00497 Bacterial extracellular solute-binding proteins, family 3 TVNIR_1237 PF01464 Transglycosylase SLT domain TVNIR_1238 PF00106 short chain dehydrogenase TVNIR_1241 PF07879 PHB/PHA accumulation regulator DNA-binding domain TVNIR_1241 PF05233 PHB accumulation regulatory domain TVNIR_1242 PF00108 Thiolase, N-terminal domain TVNIR_1242 PF02803 Thiolase, C-terminal domain TVNIR_1244 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) TVNIR_1245 PF00561 alpha/beta hydrolase fold TVNIR_1246 PF01842 ACT domain TVNIR_1246 PF00551 Formyl transferase TVNIR_1249 PF13657 HipA N-terminal domain TVNIR_1249 PF07804 HipA-like C-terminal domain TVNIR_1251 PF14706 Transposase DNA-binding TVNIR_1251 PF02281 Transposase Tn5 dimerisation domain TVNIR_1251 PF01609 Transposase DDE domain TVNIR_1253 PF13361 UvrD-like helicase C-terminal domain TVNIR_1253 PF00580 UvrD/REP helicase N-terminal domain TVNIR_1253 PF12462 DNA helicase IV / RNA helicase N terminal TVNIR_1256 PF01137 RNA 3'-terminal phosphate cyclase TVNIR_1256 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain TVNIR_1257 PF12706 Beta-lactamase superfamily domain TVNIR_1257 PF00753 Metallo-beta-lactamase superfamily TVNIR_1258 PF00027 Cyclic nucleotide-binding domain TVNIR_1258 PF13545 Crp-like helix-turn-helix domain TVNIR_1262 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TVNIR_1263 PF00890 FAD binding domain TVNIR_1263 PF02910 Fumarate reductase flavoprotein C-term TVNIR_1264 PF13085 2Fe-2S iron-sulfur cluster binding domain TVNIR_1264 PF13183 4Fe-4S dicluster domain TVNIR_1265 PF00128 Alpha amylase, catalytic domain TVNIR_1265 PF02806 Alpha amylase, C-terminal all-beta domain TVNIR_1265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TVNIR_1268 PF00483 Nucleotidyl transferase TVNIR_1270 PF02446 4-alpha-glucanotransferase TVNIR_1275 PF13230 Glutamine amidotransferases class-II TVNIR_1276 PF00300 Histidine phosphatase superfamily (branch 1) TVNIR_1278 PF02541 Ppx/GppA phosphatase family TVNIR_1279 PF13089 Polyphosphate kinase N-terminal domain TVNIR_1279 PF17941 Polyphosphate kinase C-terminal domain 1 TVNIR_1279 PF13090 Polyphosphate kinase C-terminal domain 2 TVNIR_1279 PF02503 Polyphosphate kinase middle domain TVNIR_1280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVNIR_1280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVNIR_1281 PF00202 Aminotransferase class-III TVNIR_1282 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TVNIR_1282 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TVNIR_1283 PF00939 Sodium:sulfate symporter transmembrane region TVNIR_1289 PF04349 Periplasmic glucan biosynthesis protein, MdoG TVNIR_1290 PF00535 Glycosyl transferase family 2 TVNIR_1291 PF01292 Prokaryotic cytochrome b561 TVNIR_1293 PF03600 Citrate transporter TVNIR_1293 PF02080 TrkA-C domain TVNIR_1295 PF00009 Elongation factor Tu GTP binding domain TVNIR_1296 PF00881 Nitroreductase family TVNIR_1300 PF00072 Response regulator receiver domain TVNIR_1301 PF01435 Peptidase family M48 TVNIR_1302 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_1309 PF01871 AMMECR1 TVNIR_1309 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TVNIR_1310 PF01875 Memo-like protein TVNIR_1313 PF02911 Formyl transferase, C-terminal domain TVNIR_1313 PF00551 Formyl transferase TVNIR_1313 PF00378 Enoyl-CoA hydratase/isomerase TVNIR_1314 PF08753 NikR C terminal nickel binding domain TVNIR_1314 PF01402 Ribbon-helix-helix protein, copG family TVNIR_1316 PF00925 GTP cyclohydrolase II TVNIR_1316 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TVNIR_1319 PF01891 Cobalt uptake substrate-specific transmembrane region TVNIR_1319 PF13190 PDGLE domain TVNIR_1321 PF00005 ABC transporter TVNIR_1322 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TVNIR_1322 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TVNIR_1325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TVNIR_1325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TVNIR_1326 PF00561 alpha/beta hydrolase fold TVNIR_1329 PF00384 Molybdopterin oxidoreductase TVNIR_1329 PF01568 Molydopterin dinucleotide binding domain TVNIR_1329 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_1330 PF12838 4Fe-4S dicluster domain TVNIR_1330 PF12800 4Fe-4S binding domain TVNIR_1331 PF12801 4Fe-4S binding domain TVNIR_1331 PF13237 4Fe-4S dicluster domain TVNIR_1333 PF08241 Methyltransferase domain TVNIR_1337 PF18327 Proline utilization A proline dehydrogenase N-terminal domain TVNIR_1337 PF14850 DNA-binding domain of Proline dehydrogenase TVNIR_1337 PF01619 Proline dehydrogenase TVNIR_1337 PF00171 Aldehyde dehydrogenase family TVNIR_1338 PF01619 Proline dehydrogenase TVNIR_1338 PF18327 Proline utilization A proline dehydrogenase N-terminal domain TVNIR_1338 PF14850 DNA-binding domain of Proline dehydrogenase TVNIR_1338 PF00171 Aldehyde dehydrogenase family TVNIR_1339 PF01625 Peptide methionine sulfoxide reductase TVNIR_1343 PF00571 CBS domain TVNIR_1351 PF03176 MMPL family TVNIR_1356 PF00005 ABC transporter TVNIR_1357 PF01032 FecCD transport family TVNIR_1358 PF01497 Periplasmic binding protein TVNIR_1359 PF00749 tRNA synthetases class I (E and Q), catalytic domain TVNIR_1362 PF00749 tRNA synthetases class I (E and Q), catalytic domain TVNIR_1362 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain TVNIR_1363 PF00196 Bacterial regulatory proteins, luxR family TVNIR_1363 PF00072 Response regulator receiver domain TVNIR_1364 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_1364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_1364 PF00989 PAS fold TVNIR_1369 PF02545 Maf-like protein TVNIR_1370 PF00364 Biotin-requiring enzyme TVNIR_1370 PF00682 HMGL-like TVNIR_1370 PF02436 Conserved carboxylase domain TVNIR_1371 PF00289 Biotin carboxylase, N-terminal domain TVNIR_1371 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TVNIR_1371 PF02785 Biotin carboxylase C-terminal domain TVNIR_1373 PF01783 Ribosomal L32p protein family TVNIR_1374 PF02504 Fatty acid synthesis protein TVNIR_1375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TVNIR_1375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TVNIR_1377 PF03167 Uracil DNA glycosylase superfamily TVNIR_1378 PF02151 UvrB/uvrC motif TVNIR_1378 PF08459 UvrC Helix-hairpin-helix N-terminal TVNIR_1378 PF01541 GIY-YIG catalytic domain TVNIR_1379 PF01066 CDP-alcohol phosphatidyltransferase TVNIR_1380 PF00953 Glycosyl transferase family 4 TVNIR_1384 PF13614 AAA domain TVNIR_1384 PF13807 G-rich domain on putative tyrosine kinase TVNIR_1384 PF02706 Chain length determinant protein TVNIR_1388 PF00753 Metallo-beta-lactamase superfamily TVNIR_1390 PF00285 Citrate synthase, C-terminal domain TVNIR_1391 PF00857 Isochorismatase family TVNIR_1404 PF01968 Hydantoinase/oxoprolinase TVNIR_1404 PF05378 Hydantoinase/oxoprolinase N-terminal region TVNIR_1405 PF03707 Bacterial signalling protein N terminal repeat TVNIR_1405 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_1405 PF00563 EAL domain TVNIR_1408 PF05209 Septum formation inhibitor MinC, N-terminal domain TVNIR_1408 PF03775 Septum formation inhibitor MinC, C-terminal domain TVNIR_1409 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TVNIR_1410 PF03776 Septum formation topological specificity factor MinE TVNIR_1411 PF04298 Putative neutral zinc metallopeptidase TVNIR_1412 PF00924 Mechanosensitive ion channel TVNIR_1414 PF00912 Transglycosylase TVNIR_1417 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TVNIR_1418 PF14489 QueF-like protein TVNIR_1419 PF06470 SMC proteins Flexible Hinge Domain TVNIR_1419 PF02463 RecF/RecN/SMC N terminal domain TVNIR_1420 PF04354 ZipA, C-terminal FtsZ-binding domain TVNIR_1421 PF12826 Helix-hairpin-helix motif TVNIR_1421 PF03120 NAD-dependent DNA ligase OB-fold domain TVNIR_1421 PF01653 NAD-dependent DNA ligase adenylation domain TVNIR_1421 PF00533 BRCA1 C Terminus (BRCT) domain TVNIR_1421 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TVNIR_1423 PF03795 YCII-related domain TVNIR_1424 PF01300 Telomere recombination TVNIR_1425 PF02163 Peptidase family M50 TVNIR_1428 PF00579 tRNA synthetases class I (W and Y) TVNIR_1429 PF02616 Segregation and condensation protein ScpA TVNIR_1430 PF04079 Segregation and condensation complex subunit ScpB TVNIR_1432 PF00994 Probable molybdopterin binding domain TVNIR_1433 PF00849 RNA pseudouridylate synthase TVNIR_1433 PF01479 S4 domain TVNIR_1436 PF03462 PCRF domain TVNIR_1436 PF00472 RF-1 domain TVNIR_1437 PF01336 OB-fold nucleic acid binding domain TVNIR_1437 PF00152 tRNA synthetases class II (D, K and N) TVNIR_1440 PF00679 Elongation factor G C-terminus TVNIR_1440 PF14492 Elongation Factor G, domain II TVNIR_1440 PF03764 Elongation factor G, domain IV TVNIR_1440 PF00009 Elongation factor Tu GTP binding domain TVNIR_1442 PF01571 Aminomethyltransferase folate-binding domain TVNIR_1444 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TVNIR_1445 PF02910 Fumarate reductase flavoprotein C-term TVNIR_1445 PF00890 FAD binding domain TVNIR_1446 PF13085 2Fe-2S iron-sulfur cluster binding domain TVNIR_1448 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVNIR_1448 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVNIR_1448 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVNIR_1448 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVNIR_1450 PF00037 4Fe-4S binding domain TVNIR_1450 PF11953 Domain of unknown function (DUF3470) TVNIR_1451 PF01624 MutS domain I TVNIR_1451 PF05188 MutS domain II TVNIR_1451 PF05192 MutS domain III TVNIR_1451 PF05190 MutS family domain IV TVNIR_1451 PF00488 MutS domain V TVNIR_1452 PF02464 Competence-damaged protein TVNIR_1452 PF18146 Damage-inducible protein CinA KH domain TVNIR_1452 PF00994 Probable molybdopterin binding domain TVNIR_1453 PF00154 recA bacterial DNA recombination protein TVNIR_1454 PF02631 RecX family TVNIR_1455 PF01411 tRNA synthetases class II (A) TVNIR_1455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TVNIR_1455 PF02272 DHHA1 domain TVNIR_1456 PF13840 ACT domain TVNIR_1456 PF01842 ACT domain TVNIR_1456 PF00696 Amino acid kinase family TVNIR_1457 PF02599 Global regulator protein family TVNIR_1458 PF02599 Global regulator protein family TVNIR_1459 PF18211 Csm1 subunit domain B TVNIR_1459 PF01966 HD domain TVNIR_1461 PF03787 RAMP superfamily TVNIR_1465 PF01609 Transposase DDE domain TVNIR_1465 PF02281 Transposase Tn5 dimerisation domain TVNIR_1465 PF14706 Transposase DNA-binding TVNIR_1485 PF09827 CRISPR associated protein Cas2 TVNIR_1486 PF01867 CRISPR associated protein Cas1 TVNIR_1488 PF09827 CRISPR associated protein Cas2 TVNIR_1499 PF00563 EAL domain TVNIR_1499 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_1499 PF03707 Bacterial signalling protein N terminal repeat TVNIR_1499 PF13188 PAS domain TVNIR_1501 PF00226 DnaJ domain TVNIR_1501 PF01556 DnaJ C terminal domain TVNIR_1502 PF00011 Hsp20/alpha crystallin family TVNIR_1503 PF00011 Hsp20/alpha crystallin family TVNIR_1505 PF12848 ABC transporter TVNIR_1505 PF00005 ABC transporter TVNIR_1507 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TVNIR_1510 PF01180 Dihydroorotate dehydrogenase TVNIR_1511 PF00873 AcrB/AcrD/AcrF family TVNIR_1515 PF00106 short chain dehydrogenase TVNIR_1516 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_1516 PF00989 PAS fold TVNIR_1516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_1517 PF00196 Bacterial regulatory proteins, luxR family TVNIR_1517 PF00072 Response regulator receiver domain TVNIR_1518 PF01593 Flavin containing amine oxidoreductase TVNIR_1521 PF02646 RmuC family TVNIR_1522 PF13419 Haloacid dehalogenase-like hydrolase TVNIR_1524 PF01979 Amidohydrolase family TVNIR_1527 PF00313 'Cold-shock' DNA-binding domain TVNIR_1528 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TVNIR_1528 PF01243 Pyridoxamine 5'-phosphate oxidase TVNIR_1529 PF13187 4Fe-4S dicluster domain TVNIR_1529 PF01645 Conserved region in glutamate synthase TVNIR_1530 PF08497 Radical SAM N-terminal TVNIR_1530 PF04055 Radical SAM superfamily TVNIR_1530 PF11842 Domain of unknown function (DUF3362) TVNIR_1531 PF01266 FAD dependent oxidoreductase TVNIR_1531 PF05430 S-adenosyl-L-methionine-dependent methyltransferase TVNIR_1532 PF01476 LysM domain TVNIR_1532 PF08525 Opacity-associated protein A N-terminal motif TVNIR_1532 PF01551 Peptidase family M23 TVNIR_1533 PF01061 ABC-2 type transporter TVNIR_1534 PF00005 ABC transporter TVNIR_1535 PF02789 Cytosol aminopeptidase family, N-terminal domain TVNIR_1535 PF00883 Cytosol aminopeptidase family, catalytic domain TVNIR_1536 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TVNIR_1536 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TVNIR_1538 PF00072 Response regulator receiver domain TVNIR_1538 PF02954 Bacterial regulatory protein, Fis family TVNIR_1538 PF00158 Sigma-54 interaction domain TVNIR_1540 PF00034 Cytochrome c TVNIR_1543 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TVNIR_1543 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVNIR_1543 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_1545 PF01207 Dihydrouridine synthase (Dus) TVNIR_1546 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_1546 PF00072 Response regulator receiver domain TVNIR_1548 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_1548 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TVNIR_1549 PF01645 Conserved region in glutamate synthase TVNIR_1549 PF01493 GXGXG motif TVNIR_1549 PF00310 Glutamine amidotransferases class-II TVNIR_1549 PF04898 Glutamate synthase central domain TVNIR_1554 PF00115 Cytochrome C and Quinol oxidase polypeptide I TVNIR_1559 PF00034 Cytochrome c TVNIR_1561 PF00403 Heavy-metal-associated domain TVNIR_1568 PF13091 PLD-like domain TVNIR_1569 PF08007 Cupin superfamily protein TVNIR_1570 PF08328 Adenylosuccinate lyase C-terminal TVNIR_1570 PF00206 Lyase TVNIR_1571 PF00206 Lyase TVNIR_1571 PF10415 Fumarase C C-terminus TVNIR_1572 PF00694 Aconitase C-terminal domain TVNIR_1572 PF00330 Aconitase family (aconitate hydratase) TVNIR_1573 PF04356 Protein of unknown function (DUF489) TVNIR_1575 PF13344 Haloacid dehalogenase-like hydrolase TVNIR_1575 PF00293 NUDIX domain TVNIR_1576 PF00180 Isocitrate/isopropylmalate dehydrogenase TVNIR_1577 PF02617 ATP-dependent Clp protease adaptor protein ClpS TVNIR_1578 PF17871 AAA lid domain TVNIR_1578 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_1578 PF10431 C-terminal, D2-small domain, of ClpB protein TVNIR_1578 PF02861 Clp amino terminal domain, pathogenicity island component TVNIR_1578 PF07724 AAA domain (Cdc48 subfamily) TVNIR_1579 PF01176 Translation initiation factor 1A / IF-1 TVNIR_1580 PF00698 Acyl transferase domain TVNIR_1582 PF00550 Phosphopantetheine attachment site TVNIR_1583 PF02801 Beta-ketoacyl synthase, C-terminal domain TVNIR_1583 PF00109 Beta-ketoacyl synthase, N-terminal domain TVNIR_1584 PF04715 Anthranilate synthase component I, N terminal region TVNIR_1584 PF00425 chorismate binding enzyme TVNIR_1585 PF01063 Amino-transferase class IV TVNIR_1586 PF02618 YceG-like family TVNIR_1587 PF02223 Thymidylate kinase TVNIR_1588 PF09115 DNA polymerase III, delta subunit, C terminal TVNIR_1590 PF00266 Aminotransferase class-V TVNIR_1592 PF00571 CBS domain TVNIR_1592 PF00005 ABC transporter TVNIR_1593 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_1594 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TVNIR_1595 PF00202 Aminotransferase class-III TVNIR_1600 PF00581 Rhodanese-like domain TVNIR_1600 PF00899 ThiF family TVNIR_1603 PF01048 Phosphorylase superfamily TVNIR_1606 PF00403 Heavy-metal-associated domain TVNIR_1608 PF00933 Glycosyl hydrolase family 3 N terminal domain TVNIR_1610 PF12344 Ultra-violet resistance protein B TVNIR_1610 PF02151 UvrB/uvrC motif TVNIR_1610 PF04851 Type III restriction enzyme, res subunit TVNIR_1610 PF00271 Helicase conserved C-terminal domain TVNIR_1610 PF17757 UvrB interaction domain TVNIR_1612 PF00857 Isochorismatase family TVNIR_1613 PF02678 Pirin TVNIR_1613 PF05726 Pirin C-terminal cupin domain TVNIR_1614 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_1614 PF03466 LysR substrate binding domain TVNIR_1618 PF06736 Protein of unknown function (DUF1211) TVNIR_1622 PF12704 MacB-like periplasmic core domain TVNIR_1622 PF00005 ABC transporter TVNIR_1622 PF02687 FtsX-like permease family TVNIR_1623 PF00005 ABC transporter TVNIR_1630 PF06832 Penicillin-Binding Protein C-terminus Family TVNIR_1630 PF00905 Penicillin binding protein transpeptidase domain TVNIR_1630 PF00912 Transglycosylase TVNIR_1631 PF07703 Alpha-2-macroglobulin bait region domain TVNIR_1631 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain TVNIR_1631 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TVNIR_1631 PF11974 Bacterial alpha-2-macroglobulin MG3 domain TVNIR_1631 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain TVNIR_1631 PF17962 Bacterial macroglobulin domain 6 TVNIR_1631 PF01835 MG2 domain TVNIR_1631 PF00207 Alpha-2-macroglobulin family TVNIR_1634 PF12801 4Fe-4S binding domain TVNIR_1634 PF04205 FMN-binding domain TVNIR_1635 PF05048 Periplasmic copper-binding protein (NosD) TVNIR_1636 PF00005 ABC transporter TVNIR_1637 PF12679 ABC-2 family transporter protein TVNIR_1638 PF18793 Nitrous oxide reductase propeller repeat 2 TVNIR_1638 PF18764 Nitrous oxide reductase propeller repeat TVNIR_1639 PF05573 NosL TVNIR_1642 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TVNIR_1645 PF17805 AsnC-like ligand binding domain TVNIR_1646 PF17805 AsnC-like ligand binding domain TVNIR_1647 PF17805 AsnC-like ligand binding domain TVNIR_1648 PF13186 Iron-sulfur cluster-binding domain TVNIR_1648 PF04055 Radical SAM superfamily TVNIR_1650 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TVNIR_1651 PF13495 Phage integrase, N-terminal SAM-like domain TVNIR_1651 PF00589 Phage integrase family TVNIR_1652 PF14319 Transposase zinc-binding domain TVNIR_1652 PF04986 Putative transposase TVNIR_1655 PF00034 Cytochrome c TVNIR_1656 PF00115 Cytochrome C and Quinol oxidase polypeptide I TVNIR_1657 PF07728 AAA domain (dynein-related subfamily) TVNIR_1657 PF08406 CbbQ/NirQ/NorQ C-terminal TVNIR_1658 PF00092 von Willebrand factor type A domain TVNIR_1660 PF00425 chorismate binding enzyme TVNIR_1661 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TVNIR_1661 PF16582 Middle domain of thiamine pyrophosphate TVNIR_1661 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TVNIR_1662 PF12697 Alpha/beta hydrolase family TVNIR_1663 PF00378 Enoyl-CoA hydratase/isomerase TVNIR_1664 PF13378 Enolase C-terminal domain-like TVNIR_1665 PF00501 AMP-binding enzyme TVNIR_1665 PF13193 AMP-binding enzyme C-terminal domain TVNIR_1666 PF03061 Thioesterase superfamily TVNIR_1667 PF01734 Patatin-like phospholipase TVNIR_1668 PF00686 Starch binding domain TVNIR_1668 PF02806 Alpha amylase, C-terminal all-beta domain TVNIR_1668 PF00128 Alpha amylase, catalytic domain TVNIR_1668 PF01833 IPT/TIG domain TVNIR_1674 PF14706 Transposase DNA-binding TVNIR_1674 PF01609 Transposase DDE domain TVNIR_1674 PF02281 Transposase Tn5 dimerisation domain TVNIR_1675 PF04358 DsrC like protein TVNIR_1676 PF00266 Aminotransferase class-V TVNIR_1678 PF00916 Sulfate permease family TVNIR_1678 PF01740 STAS domain TVNIR_1681 PF03477 ATP cone domain TVNIR_1691 PF14338 Mrr N-terminal domain TVNIR_1691 PF04471 Restriction endonuclease TVNIR_1692 PF04986 Putative transposase TVNIR_1692 PF14319 Transposase zinc-binding domain TVNIR_1693 PF00589 Phage integrase family TVNIR_1693 PF13495 Phage integrase, N-terminal SAM-like domain TVNIR_1701 PF01053 Cys/Met metabolism PLP-dependent enzyme TVNIR_1705 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_1709 PF00581 Rhodanese-like domain TVNIR_1711 PF09335 SNARE associated Golgi protein TVNIR_1714 PF17863 AAA lid domain TVNIR_1714 PF07726 ATPase family associated with various cellular activities (AAA) TVNIR_1715 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TVNIR_1715 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TVNIR_1716 PF00111 2Fe-2S iron-sulfur cluster binding domain TVNIR_1716 PF01799 [2Fe-2S] binding domain TVNIR_1723 PF05685 Putative restriction endonuclease TVNIR_1726 PF04434 SWIM zinc finger TVNIR_1726 PF00271 Helicase conserved C-terminal domain TVNIR_1726 PF00176 SNF2 family N-terminal domain TVNIR_1727 PF05685 Putative restriction endonuclease TVNIR_1739 PF00182 Chitinase class I TVNIR_1747 PF09312 SurA N-terminal domain TVNIR_1748 PF04358 DsrC like protein TVNIR_1749 PF02665 Nitrate reductase gamma subunit TVNIR_1750 PF02613 Nitrate reductase delta subunit TVNIR_1751 PF14711 Respiratory nitrate reductase beta C-terminal TVNIR_1751 PF13247 4Fe-4S dicluster domain TVNIR_1752 PF14710 Respiratory nitrate reductase alpha N-terminal TVNIR_1752 PF01568 Molydopterin dinucleotide binding domain TVNIR_1752 PF00384 Molybdopterin oxidoreductase TVNIR_1753 PF07690 Major Facilitator Superfamily TVNIR_1754 PF07690 Major Facilitator Superfamily TVNIR_1755 PF07690 Major Facilitator Superfamily TVNIR_1756 PF00672 HAMP domain TVNIR_1756 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TVNIR_1756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_1756 PF07730 Histidine kinase TVNIR_1757 PF00072 Response regulator receiver domain TVNIR_1757 PF00196 Bacterial regulatory proteins, luxR family TVNIR_1758 PF04358 DsrC like protein TVNIR_1761 PF00478 IMP dehydrogenase / GMP reductase domain TVNIR_1761 PF00571 CBS domain TVNIR_1763 PF03466 LysR substrate binding domain TVNIR_1763 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_1766 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TVNIR_1766 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVNIR_1767 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVNIR_1767 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TVNIR_1780 PF02492 CobW/HypB/UreG, nucleotide-binding domain TVNIR_1780 PF07683 Cobalamin synthesis protein cobW C-terminal domain TVNIR_1787 PF00591 Glycosyl transferase family, a/b domain TVNIR_1787 PF02885 Glycosyl transferase family, helical bundle domain TVNIR_1789 PF04381 Putative exonuclease, RdgC TVNIR_1793 PF00107 Zinc-binding dehydrogenase TVNIR_1793 PF08240 Alcohol dehydrogenase GroES-like domain TVNIR_1798 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TVNIR_1798 PF01872 RibD C-terminal domain TVNIR_1801 PF00483 Nucleotidyl transferase TVNIR_1802 PF10531 SLBB domain TVNIR_1803 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TVNIR_1804 PF18073 Rubredoxin metal binding domain TVNIR_1805 PF00216 Bacterial DNA-binding protein TVNIR_1806 PF00575 S1 RNA binding domain TVNIR_1807 PF02224 Cytidylate kinase TVNIR_1808 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TVNIR_1809 PF01842 ACT domain TVNIR_1809 PF02153 Prephenate dehydrogenase TVNIR_1810 PF00155 Aminotransferase class I and II TVNIR_1811 PF00800 Prephenate dehydratase TVNIR_1811 PF01842 ACT domain TVNIR_1811 PF01817 Chorismate mutase type II TVNIR_1812 PF01842 ACT domain TVNIR_1812 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TVNIR_1812 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TVNIR_1813 PF00266 Aminotransferase class-V TVNIR_1814 PF00521 DNA gyrase/topoisomerase IV, subunit A TVNIR_1814 PF03989 DNA gyrase C-terminal domain, beta-propeller TVNIR_1815 PF01008 Initiation factor 2 subunit family TVNIR_1816 PF13567 Domain of unknown function (DUF4131) TVNIR_1816 PF00753 Metallo-beta-lactamase superfamily TVNIR_1816 PF03772 Competence protein TVNIR_1818 PF00005 ABC transporter TVNIR_1819 PF02687 FtsX-like permease family TVNIR_1819 PF12704 MacB-like periplasmic core domain TVNIR_1821 PF04371 Porphyromonas-type peptidyl-arginine deiminase TVNIR_1822 PF00795 Carbon-nitrogen hydrolase TVNIR_1824 PF02559 CarD-like/TRCF domain TVNIR_1824 PF00271 Helicase conserved C-terminal domain TVNIR_1824 PF00270 DEAD/DEAH box helicase TVNIR_1824 PF03461 TRCF domain TVNIR_1824 PF17757 UvrB interaction domain TVNIR_1826 PF01343 Peptidase family S49 TVNIR_1826 PF06965 Na+/H+ antiporter 1 TVNIR_1827 PF13419 Haloacid dehalogenase-like hydrolase TVNIR_1828 PF00849 RNA pseudouridylate synthase TVNIR_1828 PF01479 S4 domain TVNIR_1830 PF12111 Polyribonucleotide phosphorylase C terminal TVNIR_1830 PF10150 Ribonuclease E/G family TVNIR_1830 PF00575 S1 RNA binding domain TVNIR_1831 PF01451 Low molecular weight phosphotyrosine protein phosphatase TVNIR_1832 PF02769 AIR synthase related protein, C-terminal domain TVNIR_1832 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TVNIR_1832 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal TVNIR_1835 PF02772 S-adenosylmethionine synthetase, central domain TVNIR_1835 PF00438 S-adenosylmethionine synthetase, N-terminal domain TVNIR_1835 PF02773 S-adenosylmethionine synthetase, C-terminal domain TVNIR_1836 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TVNIR_1836 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVNIR_1836 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVNIR_1837 PF01521 Iron-sulphur cluster biosynthesis TVNIR_1838 PF00355 Rieske [2Fe-2S] domain TVNIR_1839 PF01883 Iron-sulfur cluster assembly protein TVNIR_1840 PF01458 Uncharacterized protein family (UPF0051) TVNIR_1841 PF00005 ABC transporter TVNIR_1842 PF02657 Fe-S metabolism associated domain TVNIR_1843 PF01458 Uncharacterized protein family (UPF0051) TVNIR_1844 PF02082 Transcriptional regulator TVNIR_1845 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like TVNIR_1846 PF00132 Bacterial transferase hexapeptide (six repeats) TVNIR_1846 PF14602 Hexapeptide repeat of succinyl-transferase TVNIR_1846 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TVNIR_1847 PF03960 ArsC family TVNIR_1849 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TVNIR_1849 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TVNIR_1850 PF01926 50S ribosome-binding GTPase TVNIR_1850 PF12631 MnmE helical domain TVNIR_1850 PF10396 GTP-binding protein TrmE N-terminus TVNIR_1853 PF18766 SWI2/SNF2 ATPase TVNIR_1853 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TVNIR_1853 PF12008 Type I restriction and modification enzyme - subunit R C terminal TVNIR_1854 PF00270 DEAD/DEAH box helicase TVNIR_1854 PF17191 RecG wedge domain TVNIR_1854 PF13749 Putative ATP-dependent DNA helicase recG C-terminal TVNIR_1856 PF13749 Putative ATP-dependent DNA helicase recG C-terminal TVNIR_1856 PF00270 DEAD/DEAH box helicase TVNIR_1856 PF17191 RecG wedge domain TVNIR_1859 PF12161 HsdM N-terminal domain TVNIR_1859 PF02384 N-6 DNA Methylase TVNIR_1860 PF01139 tRNA-splicing ligase RtcB TVNIR_1864 PF07556 Protein of unknown function (DUF1538) TVNIR_1866 PF07556 Protein of unknown function (DUF1538) TVNIR_1873 PF02386 Cation transport protein TVNIR_1874 PF02254 TrkA-N domain TVNIR_1874 PF02080 TrkA-C domain TVNIR_1876 PF00005 ABC transporter TVNIR_1877 PF01061 ABC-2 type transporter TVNIR_1878 PF01726 LexA DNA binding domain TVNIR_1878 PF00717 Peptidase S24-like TVNIR_1883 PF02542 YgbB family TVNIR_1885 PF10437 Bacterial lipoate protein ligase C-terminus TVNIR_1885 PF03099 Biotin/lipoate A/B protein ligase family TVNIR_1886 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TVNIR_1887 PF04977 Septum formation initiator TVNIR_1888 PF03952 Enolase, N-terminal domain TVNIR_1888 PF00113 Enolase, C-terminal TIM barrel domain TVNIR_1889 PF00793 DAHP synthetase I family TVNIR_1890 PF00117 Glutamine amidotransferase class-I TVNIR_1890 PF06418 CTP synthase N-terminus TVNIR_1891 PF09179 TilS substrate binding domain TVNIR_1891 PF01171 PP-loop family TVNIR_1891 PF11734 TilS substrate C-terminal domain TVNIR_1892 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TVNIR_1893 PF02811 PHP domain TVNIR_1893 PF14579 Helix-hairpin-helix motif TVNIR_1893 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TVNIR_1893 PF07733 Bacterial DNA polymerase III alpha NTPase domain TVNIR_1893 PF01336 OB-fold nucleic acid binding domain TVNIR_1894 PF01351 Ribonuclease HII TVNIR_1895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TVNIR_1895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TVNIR_1896 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TVNIR_1897 PF02684 Lipid-A-disaccharide synthetase TVNIR_1899 PF02719 Polysaccharide biosynthesis protein TVNIR_1900 PF00953 Glycosyl transferase family 4 TVNIR_1906 PF02719 Polysaccharide biosynthesis protein TVNIR_1908 PF00005 ABC transporter TVNIR_1908 PF14524 Wzt C-terminal domain TVNIR_1913 PF00535 Glycosyl transferase family 2 TVNIR_1914 PF00263 Bacterial type II and III secretion system protein TVNIR_1914 PF03958 Bacterial type II/III secretion system short domain TVNIR_1918 PF03934 Type II secretion system (T2SS), protein K TVNIR_1921 PF12019 Type II transport protein GspH TVNIR_1921 PF07963 Prokaryotic N-terminal methylation motif TVNIR_1922 PF08334 Type II secretion system (T2SS), protein G TVNIR_1922 PF07963 Prokaryotic N-terminal methylation motif TVNIR_1923 PF00482 Type II secretion system (T2SS), protein F TVNIR_1924 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TVNIR_1924 PF00437 Type II/IV secretion system protein TVNIR_1925 PF00534 Glycosyl transferases group 1 TVNIR_1925 PF13439 Glycosyltransferase Family 4 TVNIR_1926 PF00535 Glycosyl transferase family 2 TVNIR_1927 PF16363 GDP-mannose 4,6 dehydratase TVNIR_1928 PF00483 Nucleotidyl transferase TVNIR_1929 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TVNIR_1930 PF04321 RmlD substrate binding domain TVNIR_1933 PF13514 AAA domain TVNIR_1934 PF00149 Calcineurin-like phosphoesterase TVNIR_1938 PF01464 Transglycosylase SLT domain TVNIR_1938 PF01476 LysM domain TVNIR_1939 PF03734 L,D-transpeptidase catalytic domain TVNIR_1939 PF01471 Putative peptidoglycan binding domain TVNIR_1943 PF00361 Proton-conducting membrane transporter TVNIR_1944 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TVNIR_1944 PF00361 Proton-conducting membrane transporter TVNIR_1945 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TVNIR_1945 PF00361 Proton-conducting membrane transporter TVNIR_1946 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TVNIR_1947 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TVNIR_1948 PF00037 4Fe-4S binding domain TVNIR_1950 PF00146 NADH dehydrogenase TVNIR_1951 PF00384 Molybdopterin oxidoreductase TVNIR_1951 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TVNIR_1951 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TVNIR_1952 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TVNIR_1952 PF10531 SLBB domain TVNIR_1952 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TVNIR_1954 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TVNIR_1955 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TVNIR_1956 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TVNIR_1957 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TVNIR_1958 PF00343 Carbohydrate phosphorylase TVNIR_1960 PF00132 Bacterial transferase hexapeptide (six repeats) TVNIR_1960 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TVNIR_1961 PF07977 FabA-like domain TVNIR_1962 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TVNIR_1962 PF00132 Bacterial transferase hexapeptide (six repeats) TVNIR_1964 PF07244 Surface antigen variable number repeat TVNIR_1964 PF01103 Surface antigen TVNIR_1965 PF13180 PDZ domain TVNIR_1965 PF17820 PDZ domain TVNIR_1965 PF02163 Peptidase family M50 TVNIR_1966 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TVNIR_1966 PF13288 DXP reductoisomerase C-terminal domain TVNIR_1966 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TVNIR_1968 PF01255 Putative undecaprenyl diphosphate synthase TVNIR_1969 PF01765 Ribosome recycling factor TVNIR_1970 PF00696 Amino acid kinase family TVNIR_1971 PF00889 Elongation factor TS TVNIR_1972 PF00318 Ribosomal protein S2 TVNIR_1973 PF00557 Metallopeptidase family M24 TVNIR_1974 PF08335 GlnD PII-uridylyltransferase TVNIR_1974 PF01966 HD domain TVNIR_1974 PF01909 Nucleotidyltransferase domain TVNIR_1976 PF00270 DEAD/DEAH box helicase TVNIR_1976 PF04408 Helicase associated domain (HA2) TVNIR_1976 PF08482 ATP-dependent helicase C-terminal TVNIR_1976 PF00271 Helicase conserved C-terminal domain TVNIR_1985 PF13472 GDSL-like Lipase/Acylhydrolase family TVNIR_1986 PF00005 ABC transporter TVNIR_1988 PF04607 Region found in RelA / SpoT proteins TVNIR_1988 PF02824 TGS domain TVNIR_1988 PF13291 ACT domain TVNIR_1989 PF01389 OmpA-like transmembrane domain TVNIR_1989 PF00691 OmpA family TVNIR_1992 PF02321 Outer membrane efflux protein TVNIR_1993 PF03412 Peptidase C39 family TVNIR_1993 PF00005 ABC transporter TVNIR_1993 PF00664 ABC transporter transmembrane region TVNIR_1994 PF00529 HlyD membrane-fusion protein of T1SS TVNIR_1995 PF07995 Glucose / Sorbosone dehydrogenase TVNIR_2003 PF03030 Inorganic H+ pyrophosphatase TVNIR_2007 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_2007 PF03707 Bacterial signalling protein N terminal repeat TVNIR_2007 PF00563 EAL domain TVNIR_2008 PF00293 NUDIX domain TVNIR_2009 PF01546 Peptidase family M20/M25/M40 TVNIR_2009 PF07687 Peptidase dimerisation domain TVNIR_2011 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TVNIR_2012 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TVNIR_2012 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TVNIR_2013 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TVNIR_2014 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TVNIR_2014 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_2014 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TVNIR_2015 PF01384 Phosphate transporter family TVNIR_2017 PF01565 FAD binding domain TVNIR_2017 PF02913 FAD linked oxidases, C-terminal domain TVNIR_2021 PF00005 ABC transporter TVNIR_2022 PF03379 CcmB protein TVNIR_2023 PF01578 Cytochrome C assembly protein TVNIR_2025 PF03100 CcmE TVNIR_2028 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TVNIR_2028 PF01578 Cytochrome C assembly protein TVNIR_2029 PF08534 Redoxin TVNIR_2030 PF03918 Cytochrome C biogenesis protein TVNIR_2032 PF00582 Universal stress protein family TVNIR_2033 PF03264 NapC/NirT cytochrome c family, N-terminal region TVNIR_2037 PF02769 AIR synthase related protein, C-terminal domain TVNIR_2037 PF00586 AIR synthase related protein, N-terminal domain TVNIR_2038 PF01924 Hydrogenase formation hypA family TVNIR_2039 PF01455 HupF/HypC family TVNIR_2043 PF00708 Acylphosphatase TVNIR_2043 PF17788 HypF Kae1-like domain TVNIR_2043 PF01300 Telomere recombination TVNIR_2043 PF07503 HypF finger TVNIR_2045 PF02492 CobW/HypB/UreG, nucleotide-binding domain TVNIR_2048 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TVNIR_2050 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE TVNIR_2052 PF01750 Hydrogenase maturation protease TVNIR_2054 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TVNIR_2054 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TVNIR_2057 PF00374 Nickel-dependent hydrogenase TVNIR_2061 PF01040 UbiA prenyltransferase family TVNIR_2062 PF13460 NAD(P)H-binding TVNIR_2062 PF11066 Protein of unknown function (DUF2867) TVNIR_2067 PF03309 Type III pantothenate kinase TVNIR_2070 PF01464 Transglycosylase SLT domain TVNIR_2080 PF00563 EAL domain TVNIR_2080 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_2080 PF03707 Bacterial signalling protein N terminal repeat TVNIR_2080 PF13188 PAS domain TVNIR_2081 PF01112 Asparaginase TVNIR_2089 PF05973 Phage derived protein Gp49-like (DUF891) TVNIR_2090 PF01381 Helix-turn-helix TVNIR_2107 PF13356 Arm DNA-binding domain TVNIR_2107 PF00589 Phage integrase family TVNIR_2108 PF00916 Sulfate permease family TVNIR_2108 PF01740 STAS domain TVNIR_2109 PF01027 Inhibitor of apoptosis-promoting Bax1 TVNIR_2110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TVNIR_2110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TVNIR_2111 PF04102 SlyX TVNIR_2112 PF04445 Putative SAM-dependent methyltransferase TVNIR_2119 PF04461 Protein of unknown function (DUF520) TVNIR_2120 PF04241 Protein of unknown function (DUF423) TVNIR_2122 PF01170 Putative RNA methylase family UPF0020 TVNIR_2122 PF10672 S-adenosylmethionine-dependent methyltransferase TVNIR_2124 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TVNIR_2124 PF02403 Seryl-tRNA synthetase N-terminal domain TVNIR_2130 PF16450 Proteasomal ATPase OB C-terminal domain TVNIR_2130 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_2130 PF17758 Proteasomal ATPase OB N-terminal domain TVNIR_2157 PF03734 L,D-transpeptidase catalytic domain TVNIR_2157 PF01476 LysM domain TVNIR_2157 PF17969 L,D-transpeptidase C-terminal domain TVNIR_2161 PF00534 Glycosyl transferases group 1 TVNIR_2161 PF13439 Glycosyltransferase Family 4 TVNIR_2162 PF00534 Glycosyl transferases group 1 TVNIR_2162 PF13439 Glycosyltransferase Family 4 TVNIR_2163 PF00535 Glycosyl transferase family 2 TVNIR_2166 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TVNIR_2168 PF01750 Hydrogenase maturation protease TVNIR_2171 PF00175 Oxidoreductase NAD-binding domain TVNIR_2171 PF00970 Oxidoreductase FAD-binding domain TVNIR_2171 PF00111 2Fe-2S iron-sulfur cluster binding domain TVNIR_2173 PF13545 Crp-like helix-turn-helix domain TVNIR_2173 PF00027 Cyclic nucleotide-binding domain TVNIR_2175 PF01053 Cys/Met metabolism PLP-dependent enzyme TVNIR_2177 PF00115 Cytochrome C and Quinol oxidase polypeptide I TVNIR_2180 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TVNIR_2180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TVNIR_2181 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TVNIR_2181 PF12801 4Fe-4S binding domain TVNIR_2181 PF13746 4Fe-4S dicluster domain TVNIR_2183 PF04055 Radical SAM superfamily TVNIR_2183 PF06969 HemN C-terminal domain TVNIR_2184 PF10996 Beta-Casp domain TVNIR_2184 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TVNIR_2184 PF00753 Metallo-beta-lactamase superfamily TVNIR_2187 PF13847 Methyltransferase domain TVNIR_2187 PF10119 Predicted methyltransferase regulatory domain TVNIR_2190 PF03631 Virulence factor BrkB TVNIR_2193 PF16123 Hydroxyacylglutathione hydrolase C-terminus TVNIR_2193 PF00753 Metallo-beta-lactamase superfamily TVNIR_2194 PF01722 BolA-like protein TVNIR_2196 PF04055 Radical SAM superfamily TVNIR_2197 PF03099 Biotin/lipoate A/B protein ligase family TVNIR_2198 PF04359 Protein of unknown function (DUF493) TVNIR_2199 PF01063 Amino-transferase class IV TVNIR_2200 PF07943 Penicillin-binding protein 5, C-terminal domain TVNIR_2200 PF00768 D-alanyl-D-alanine carboxypeptidase TVNIR_2201 PF03330 Lytic transglycolase TVNIR_2201 PF05036 Sporulation related domain TVNIR_2202 PF13406 Transglycosylase SLT domain TVNIR_2203 PF01098 Cell cycle protein TVNIR_2204 PF00905 Penicillin binding protein transpeptidase domain TVNIR_2204 PF03717 Penicillin-binding Protein dimerisation domain TVNIR_2205 PF00719 Inorganic pyrophosphatase TVNIR_2206 PF03968 OstA-like protein TVNIR_2206 PF04453 LPS transport system D TVNIR_2207 PF09312 SurA N-terminal domain TVNIR_2207 PF00639 PPIC-type PPIASE domain TVNIR_2208 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TVNIR_2209 PF00398 Ribosomal RNA adenine dimethylase TVNIR_2210 PF02685 Glucokinase TVNIR_2211 PF04379 ApaG domain TVNIR_2212 PF00149 Calcineurin-like phosphoesterase TVNIR_2214 PF00216 Bacterial DNA-binding protein TVNIR_2215 PF03483 B3/4 domain TVNIR_2215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TVNIR_2215 PF01588 Putative tRNA binding domain TVNIR_2215 PF03147 Ferredoxin-fold anticodon binding domain TVNIR_2215 PF03484 tRNA synthetase B5 domain TVNIR_2216 PF01409 tRNA synthetases class II core domain (F) TVNIR_2216 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TVNIR_2217 PF00453 Ribosomal protein L20 TVNIR_2218 PF01632 Ribosomal protein L35 TVNIR_2219 PF05198 Translation initiation factor IF-3, N-terminal domain TVNIR_2219 PF00707 Translation initiation factor IF-3, C-terminal domain TVNIR_2220 PF03129 Anticodon binding domain TVNIR_2220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TVNIR_2220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TVNIR_2220 PF02824 TGS domain TVNIR_2221 PF00141 Peroxidase TVNIR_2225 PF02028 BCCT, betaine/carnitine/choline family transporter TVNIR_2227 PF02673 Bacitracin resistance protein BacA TVNIR_2228 PF11799 impB/mucB/samB family C-terminal domain TVNIR_2228 PF00817 impB/mucB/samB family TVNIR_2229 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_2229 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVNIR_2229 PF00403 Heavy-metal-associated domain TVNIR_2237 PF01565 FAD binding domain TVNIR_2237 PF02913 FAD linked oxidases, C-terminal domain TVNIR_2238 PF01565 FAD binding domain TVNIR_2239 PF13183 4Fe-4S dicluster domain TVNIR_2239 PF02754 Cysteine-rich domain TVNIR_2240 PF01274 Malate synthase TVNIR_2242 PF00056 lactate/malate dehydrogenase, NAD binding domain TVNIR_2242 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TVNIR_2243 PF12867 DinB superfamily TVNIR_2243 PF03781 Sulfatase-modifying factor enzyme 1 TVNIR_2247 PF00463 Isocitrate lyase family TVNIR_2248 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) TVNIR_2249 PF02754 Cysteine-rich domain TVNIR_2249 PF13183 4Fe-4S dicluster domain TVNIR_2250 PF00459 Inositol monophosphatase family TVNIR_2251 PF02355 Protein export membrane protein TVNIR_2251 PF07549 SecD/SecF GG Motif TVNIR_2252 PF13721 SecD export protein N-terminal TM region TVNIR_2252 PF07549 SecD/SecF GG Motif TVNIR_2252 PF02355 Protein export membrane protein TVNIR_2253 PF02699 Preprotein translocase subunit TVNIR_2254 PF01702 Queuine tRNA-ribosyltransferase TVNIR_2255 PF02547 Queuosine biosynthesis protein TVNIR_2257 PF00580 UvrD/REP helicase N-terminal domain TVNIR_2257 PF13361 UvrD-like helicase C-terminal domain TVNIR_2258 PF00271 Helicase conserved C-terminal domain TVNIR_2258 PF00270 DEAD/DEAH box helicase TVNIR_2258 PF09369 Domain of unknown function (DUF1998) TVNIR_2260 PF13784 Fic/DOC family N-terminal TVNIR_2260 PF02661 Fic/DOC family TVNIR_2264 PF01850 PIN domain TVNIR_2265 PF07704 Rv0623-like transcription factor TVNIR_2276 PF00176 SNF2 family N-terminal domain TVNIR_2276 PF12137 RNA polymerase recycling family C-terminal TVNIR_2276 PF00271 Helicase conserved C-terminal domain TVNIR_2276 PF18337 RapA N-terminal Tudor like domain TVNIR_2276 PF18339 RapA N-terminal Tudor like domain 1 TVNIR_2278 PF12419 SNF2 Helicase protein TVNIR_2278 PF00176 SNF2 family N-terminal domain TVNIR_2278 PF00271 Helicase conserved C-terminal domain TVNIR_2282 PF01850 PIN domain TVNIR_2283 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TVNIR_2294 PF00484 Carbonic anhydrase TVNIR_2308 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TVNIR_2312 PF12852 Cupin TVNIR_2312 PF12833 Helix-turn-helix domain TVNIR_2313 PF01370 NAD dependent epimerase/dehydratase family TVNIR_2321 PF14706 Transposase DNA-binding TVNIR_2321 PF01609 Transposase DDE domain TVNIR_2321 PF02281 Transposase Tn5 dimerisation domain TVNIR_2323 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) TVNIR_2333 PF00268 Ribonucleotide reductase, small chain TVNIR_2334 PF00317 Ribonucleotide reductase, all-alpha domain TVNIR_2334 PF03477 ATP cone domain TVNIR_2334 PF02867 Ribonucleotide reductase, barrel domain TVNIR_2336 PF08241 Methyltransferase domain TVNIR_2337 PF02535 ZIP Zinc transporter TVNIR_2339 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TVNIR_2339 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TVNIR_2340 PF00175 Oxidoreductase NAD-binding domain TVNIR_2340 PF00970 Oxidoreductase FAD-binding domain TVNIR_2340 PF00042 Globin TVNIR_2341 PF03819 MazG nucleotide pyrophosphohydrolase domain TVNIR_2343 PF01235 Sodium:alanine symporter family TVNIR_2348 PF01713 Smr domain TVNIR_2348 PF00488 MutS domain V TVNIR_2357 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_2359 PF00005 ABC transporter TVNIR_2359 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TVNIR_2360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TVNIR_2360 PF00005 ABC transporter TVNIR_2363 PF03334 Na+/H+ antiporter subunit TVNIR_2364 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TVNIR_2368 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TVNIR_2370 PF08239 Bacterial SH3 domain TVNIR_2372 PF07977 FabA-like domain TVNIR_2373 PF00692 dUTPase TVNIR_2374 PF10609 NUBPL iron-transfer P-loop NTPase TVNIR_2375 PF01588 Putative tRNA binding domain TVNIR_2375 PF09334 tRNA synthetases class I (M) TVNIR_2376 PF00596 Class II Aldolase and Adducin N-terminal domain TVNIR_2379 PF02508 Rnf-Nqr subunit, membrane protein TVNIR_2380 PF04060 Putative Fe-S cluster TVNIR_2381 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TVNIR_2381 PF12838 4Fe-4S dicluster domain TVNIR_2381 PF13375 RnfC Barrel sandwich hybrid domain TVNIR_2381 PF10531 SLBB domain TVNIR_2382 PF03116 NQR2, RnfD, RnfE family TVNIR_2383 PF04205 FMN-binding domain TVNIR_2384 PF02508 Rnf-Nqr subunit, membrane protein TVNIR_2386 PF10576 Iron-sulfur binding domain of endonuclease III TVNIR_2386 PF00633 Helix-hairpin-helix motif TVNIR_2386 PF00730 HhH-GPD superfamily base excision DNA repair protein TVNIR_2390 PF13411 MerR HTH family regulatory protein TVNIR_2392 PF00875 DNA photolyase TVNIR_2392 PF03441 FAD binding domain of DNA photolyase TVNIR_2396 PF00271 Helicase conserved C-terminal domain TVNIR_2396 PF00270 DEAD/DEAH box helicase TVNIR_2398 PF00958 GMP synthase C terminal domain TVNIR_2398 PF00117 Glutamine amidotransferase class-I TVNIR_2402 PF00689 Cation transporting ATPase, C-terminus TVNIR_2402 PF00690 Cation transporter/ATPase, N-terminus TVNIR_2405 PF01227 GTP cyclohydrolase I TVNIR_2412 PF03781 Sulfatase-modifying factor enzyme 1 TVNIR_2412 PF12867 DinB superfamily TVNIR_2413 PF10017 Histidine-specific methyltransferase, SAM-dependent TVNIR_2414 PF02769 AIR synthase related protein, C-terminal domain TVNIR_2414 PF00586 AIR synthase related protein, N-terminal domain TVNIR_2416 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_2416 PF01627 Hpt domain TVNIR_2416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2416 PF00672 HAMP domain TVNIR_2416 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TVNIR_2416 PF00072 Response regulator receiver domain TVNIR_2417 PF00072 Response regulator receiver domain TVNIR_2418 PF00384 Molybdopterin oxidoreductase TVNIR_2418 PF04324 BFD-like [2Fe-2S] binding domain TVNIR_2418 PF01568 Molydopterin dinucleotide binding domain TVNIR_2418 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_2419 PF00355 Rieske [2Fe-2S] domain TVNIR_2420 PF04324 BFD-like [2Fe-2S] binding domain TVNIR_2420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVNIR_2420 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_2420 PF18267 Rubredoxin NAD+ reductase C-terminal domain TVNIR_2420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TVNIR_2421 PF00005 ABC transporter TVNIR_2422 PF00528 Binding-protein-dependent transport system inner membrane component TVNIR_2423 PF00005 ABC transporter TVNIR_2424 PF08376 Nitrate and nitrite sensing TVNIR_2424 PF03861 ANTAR domain TVNIR_2425 PF00293 NUDIX domain TVNIR_2428 PF01794 Ferric reductase like transmembrane component TVNIR_2429 PF00174 Oxidoreductase molybdopterin binding domain TVNIR_2433 PF02687 FtsX-like permease family TVNIR_2433 PF12704 MacB-like periplasmic core domain TVNIR_2434 PF00005 ABC transporter TVNIR_2435 PF03448 MgtE intracellular N domain TVNIR_2435 PF00571 CBS domain TVNIR_2435 PF01769 Divalent cation transporter TVNIR_2436 PF03448 MgtE intracellular N domain TVNIR_2436 PF01769 Divalent cation transporter TVNIR_2436 PF00571 CBS domain TVNIR_2438 PF13411 MerR HTH family regulatory protein TVNIR_2439 PF02281 Transposase Tn5 dimerisation domain TVNIR_2439 PF14706 Transposase DNA-binding TVNIR_2439 PF01609 Transposase DDE domain TVNIR_2446 PF09618 CRISPR-associated protein (Cas_Csy4) TVNIR_2447 PF09615 CRISPR-associated protein (Cas_Csy3) TVNIR_2448 PF09614 CRISPR-associated protein (Cas_Csy2) TVNIR_2449 PF09611 CRISPR-associated protein (Cas_Csy1) TVNIR_2450 PF18019 HD domain TVNIR_2451 PF01867 CRISPR associated protein Cas1 TVNIR_2454 PF04751 Protein of unknown function (DUF615) TVNIR_2457 PF04751 Protein of unknown function (DUF615) TVNIR_2460 PF00578 AhpC/TSA family TVNIR_2462 PF01242 6-pyruvoyl tetrahydropterin synthase TVNIR_2463 PF16921 Tex protein YqgF-like domain TVNIR_2463 PF09371 Tex-like protein N-terminal domain TVNIR_2463 PF00575 S1 RNA binding domain TVNIR_2463 PF17674 HHH domain TVNIR_2466 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_2466 PF03707 Bacterial signalling protein N terminal repeat TVNIR_2466 PF00563 EAL domain TVNIR_2469 PF02472 Biopolymer transport protein ExbD/TolR TVNIR_2470 PF01618 MotA/TolQ/ExbB proton channel family TVNIR_2471 PF03544 Gram-negative bacterial TonB protein C-terminal TVNIR_2473 PF00210 Ferritin-like domain TVNIR_2475 PF01654 Cytochrome bd terminal oxidase subunit I TVNIR_2476 PF02322 Cytochrome bd terminal oxidase subunit II TVNIR_2478 PF00005 ABC transporter TVNIR_2478 PF00664 ABC transporter transmembrane region TVNIR_2479 PF00005 ABC transporter TVNIR_2479 PF00664 ABC transporter transmembrane region TVNIR_2481 PF07724 AAA domain (Cdc48 subfamily) TVNIR_2481 PF10431 C-terminal, D2-small domain, of ClpB protein TVNIR_2481 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_2481 PF02861 Clp amino terminal domain, pathogenicity island component TVNIR_2481 PF17871 AAA lid domain TVNIR_2483 PF00849 RNA pseudouridylate synthase TVNIR_2484 PF13525 Outer membrane lipoprotein TVNIR_2485 PF00543 Nitrogen regulatory protein P-II TVNIR_2486 PF00795 Carbon-nitrogen hydrolase TVNIR_2486 PF02540 NAD synthase TVNIR_2487 PF00549 CoA-ligase TVNIR_2487 PF02629 CoA binding domain TVNIR_2488 PF08442 ATP-grasp domain TVNIR_2488 PF00549 CoA-ligase TVNIR_2490 PF00072 Response regulator receiver domain TVNIR_2490 PF00196 Bacterial regulatory proteins, luxR family TVNIR_2491 PF00072 Response regulator receiver domain TVNIR_2491 PF13188 PAS domain TVNIR_2491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2491 PF08448 PAS fold TVNIR_2491 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_2493 PF00486 Transcriptional regulatory protein, C terminal TVNIR_2493 PF00072 Response regulator receiver domain TVNIR_2500 PF00437 Type II/IV secretion system protein TVNIR_2502 PF04972 BON domain TVNIR_2502 PF00263 Bacterial type II and III secretion system protein TVNIR_2502 PF13629 Pilus formation protein N terminal region TVNIR_2508 PF02687 FtsX-like permease family TVNIR_2508 PF12704 MacB-like periplasmic core domain TVNIR_2509 PF00005 ABC transporter TVNIR_2515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2515 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_2516 PF00158 Sigma-54 interaction domain TVNIR_2516 PF02954 Bacterial regulatory protein, Fis family TVNIR_2516 PF00072 Response regulator receiver domain TVNIR_2517 PF02545 Maf-like protein TVNIR_2518 PF02590 Predicted SPOUT methyltransferase TVNIR_2520 PF01467 Cytidylyltransferase-like TVNIR_2521 PF00171 Aldehyde dehydrogenase family TVNIR_2524 PF13603 Leucyl-tRNA synthetase, Domain 2 TVNIR_2524 PF00133 tRNA synthetases class I (I, L, M and V) TVNIR_2524 PF08264 Anticodon-binding domain of tRNA TVNIR_2527 PF00343 Carbohydrate phosphorylase TVNIR_2529 PF01266 FAD dependent oxidoreductase TVNIR_2529 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TVNIR_2537 PF00005 ABC transporter TVNIR_2540 PF00795 Carbon-nitrogen hydrolase TVNIR_2541 PF00571 CBS domain TVNIR_2541 PF03471 Transporter associated domain TVNIR_2542 PF02130 Uncharacterized protein family UPF0054 TVNIR_2543 PF02562 PhoH-like protein TVNIR_2544 PF00919 Uncharacterized protein family UPF0004 TVNIR_2544 PF01938 TRAM domain TVNIR_2544 PF04055 Radical SAM superfamily TVNIR_2545 PF00436 Single-strand binding protein family TVNIR_2546 PF04229 GrpB protein TVNIR_2547 PF07690 Major Facilitator Superfamily TVNIR_2548 PF17755 UvrA DNA-binding domain TVNIR_2548 PF00005 ABC transporter TVNIR_2548 PF17760 UvrA interaction domain TVNIR_2549 PF01196 Ribosomal protein L17 TVNIR_2550 PF01000 RNA polymerase Rpb3/RpoA insert domain TVNIR_2550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TVNIR_2550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TVNIR_2551 PF00163 Ribosomal protein S4/S9 N-terminal domain TVNIR_2551 PF01479 S4 domain TVNIR_2552 PF00411 Ribosomal protein S11 TVNIR_2553 PF00416 Ribosomal protein S13/S18 TVNIR_2554 PF00344 SecY translocase TVNIR_2555 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TVNIR_2556 PF00327 Ribosomal protein L30p/L7e TVNIR_2557 PF00333 Ribosomal protein S5, N-terminal domain TVNIR_2557 PF03719 Ribosomal protein S5, C-terminal domain TVNIR_2558 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TVNIR_2559 PF00347 Ribosomal protein L6 TVNIR_2560 PF00410 Ribosomal protein S8 TVNIR_2561 PF00253 Ribosomal protein S14p/S29e TVNIR_2562 PF00281 Ribosomal protein L5 TVNIR_2562 PF00673 ribosomal L5P family C-terminus TVNIR_2563 PF00467 KOW motif TVNIR_2563 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TVNIR_2564 PF00238 Ribosomal protein L14p/L23e TVNIR_2565 PF00366 Ribosomal protein S17 TVNIR_2566 PF00831 Ribosomal L29 protein TVNIR_2567 PF00252 Ribosomal protein L16p/L10e TVNIR_2568 PF07650 KH domain TVNIR_2568 PF00189 Ribosomal protein S3, C-terminal domain TVNIR_2569 PF00237 Ribosomal protein L22p/L17e TVNIR_2570 PF00203 Ribosomal protein S19 TVNIR_2571 PF03947 Ribosomal Proteins L2, C-terminal domain TVNIR_2571 PF00181 Ribosomal Proteins L2, RNA binding domain TVNIR_2572 PF00276 Ribosomal protein L23 TVNIR_2573 PF00573 Ribosomal protein L4/L1 family TVNIR_2574 PF00297 Ribosomal protein L3 TVNIR_2575 PF00338 Ribosomal protein S10p/S20e TVNIR_2576 PF03143 Elongation factor Tu C-terminal domain TVNIR_2576 PF03144 Elongation factor Tu domain 2 TVNIR_2576 PF00009 Elongation factor Tu GTP binding domain TVNIR_2577 PF14492 Elongation Factor G, domain II TVNIR_2577 PF03764 Elongation factor G, domain IV TVNIR_2577 PF03144 Elongation factor Tu domain 2 TVNIR_2577 PF00009 Elongation factor Tu GTP binding domain TVNIR_2577 PF00679 Elongation factor G C-terminus TVNIR_2578 PF00177 Ribosomal protein S7p/S5e TVNIR_2579 PF00164 Ribosomal protein S12/S23 TVNIR_2580 PF04983 RNA polymerase Rpb1, domain 3 TVNIR_2580 PF05000 RNA polymerase Rpb1, domain 4 TVNIR_2580 PF04998 RNA polymerase Rpb1, domain 5 TVNIR_2580 PF00623 RNA polymerase Rpb1, domain 2 TVNIR_2580 PF04997 RNA polymerase Rpb1, domain 1 TVNIR_2581 PF04561 RNA polymerase Rpb2, domain 2 TVNIR_2581 PF10385 RNA polymerase beta subunit external 1 domain TVNIR_2581 PF04560 RNA polymerase Rpb2, domain 7 TVNIR_2581 PF04563 RNA polymerase beta subunit TVNIR_2581 PF00562 RNA polymerase Rpb2, domain 6 TVNIR_2581 PF04565 RNA polymerase Rpb2, domain 3 TVNIR_2582 PF00542 Ribosomal protein L7/L12 C-terminal domain TVNIR_2582 PF16320 Ribosomal protein L7/L12 dimerisation domain TVNIR_2583 PF00466 Ribosomal protein L10 TVNIR_2584 PF00687 Ribosomal protein L1p/L10e family TVNIR_2585 PF03946 Ribosomal protein L11, N-terminal domain TVNIR_2585 PF00298 Ribosomal protein L11, RNA binding domain TVNIR_2586 PF00467 KOW motif TVNIR_2586 PF02357 Transcription termination factor nusG TVNIR_2587 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TVNIR_2588 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TVNIR_2588 PF00437 Type II/IV secretion system protein TVNIR_2589 PF00482 Type II secretion system (T2SS), protein F TVNIR_2590 PF06750 Bacterial Peptidase A24 N-terminal domain TVNIR_2590 PF01478 Type IV leader peptidase family TVNIR_2592 PF07072 Cell division protein TVNIR_2593 PF00293 NUDIX domain TVNIR_2594 PF01960 ArgJ family TVNIR_2595 PF07516 SecA Wing and Scaffold domain TVNIR_2595 PF07517 SecA DEAD-like domain TVNIR_2595 PF02810 SEC-C motif TVNIR_2595 PF01043 SecA preprotein cross-linking domain TVNIR_2596 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TVNIR_2598 PF00091 Tubulin/FtsZ family, GTPase domain TVNIR_2598 PF12327 FtsZ family, C-terminal domain TVNIR_2599 PF02491 SHS2 domain inserted in FTSA TVNIR_2600 PF03799 Cell division protein FtsQ TVNIR_2600 PF08478 POTRA domain, FtsQ-type TVNIR_2601 PF01820 D-ala D-ala ligase N-terminus TVNIR_2601 PF07478 D-ala D-ala ligase C-terminus TVNIR_2602 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TVNIR_2602 PF01565 FAD binding domain TVNIR_2603 PF02875 Mur ligase family, glutamate ligase domain TVNIR_2603 PF08245 Mur ligase middle domain TVNIR_2603 PF01225 Mur ligase family, catalytic domain TVNIR_2604 PF03033 Glycosyltransferase family 28 N-terminal domain TVNIR_2604 PF04101 Glycosyltransferase family 28 C-terminal domain TVNIR_2605 PF01098 Cell cycle protein TVNIR_2606 PF02875 Mur ligase family, glutamate ligase domain TVNIR_2606 PF08245 Mur ligase middle domain TVNIR_2607 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TVNIR_2607 PF00953 Glycosyl transferase family 4 TVNIR_2608 PF01225 Mur ligase family, catalytic domain TVNIR_2608 PF08245 Mur ligase middle domain TVNIR_2608 PF02875 Mur ligase family, glutamate ligase domain TVNIR_2609 PF01225 Mur ligase family, catalytic domain TVNIR_2609 PF02875 Mur ligase family, glutamate ligase domain TVNIR_2609 PF08245 Mur ligase middle domain TVNIR_2610 PF00905 Penicillin binding protein transpeptidase domain TVNIR_2610 PF03717 Penicillin-binding Protein dimerisation domain TVNIR_2611 PF04999 Cell division protein FtsL TVNIR_2612 PF01795 MraW methylase family TVNIR_2613 PF02381 MraZ protein, putative antitoxin-like TVNIR_2614 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVNIR_2616 PF02021 Uncharacterised protein family UPF0102 TVNIR_2617 PF04386 Stringent starvation protein B TVNIR_2618 PF01565 FAD binding domain TVNIR_2618 PF02913 FAD linked oxidases, C-terminal domain TVNIR_2619 PF02798 Glutathione S-transferase, N-terminal domain TVNIR_2619 PF00043 Glutathione S-transferase, C-terminal domain TVNIR_2620 PF02167 Cytochrome C1 family TVNIR_2621 PF00033 Cytochrome b/b6/petB TVNIR_2621 PF00032 Cytochrome b(C-terminal)/b6/petD TVNIR_2622 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TVNIR_2622 PF00355 Rieske [2Fe-2S] domain TVNIR_2623 PF01784 NIF3 (NGG1p interacting factor 3) TVNIR_2624 PF13180 PDZ domain TVNIR_2625 PF00155 Aminotransferase class I and II TVNIR_2626 PF00815 Histidinol dehydrogenase TVNIR_2627 PF00793 DAHP synthetase I family TVNIR_2628 PF01634 ATP phosphoribosyltransferase TVNIR_2629 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TVNIR_2632 PF02470 MlaD protein TVNIR_2633 PF02405 Permease MlaE TVNIR_2634 PF00005 ABC transporter TVNIR_2636 PF01699 Sodium/calcium exchanger protein TVNIR_2637 PF00571 CBS domain TVNIR_2637 PF01380 SIS domain TVNIR_2641 PF00005 ABC transporter TVNIR_2641 PF12399 Branched-chain amino acid ATP-binding cassette transporter TVNIR_2642 PF04552 Sigma-54, DNA binding domain TVNIR_2642 PF00309 Sigma-54 factor, Activator interacting domain (AID) TVNIR_2642 PF04963 Sigma-54 factor, core binding domain TVNIR_2643 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TVNIR_2644 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TVNIR_2645 PF02603 HPr Serine kinase N terminus TVNIR_2645 PF07475 HPr Serine kinase C-terminal domain TVNIR_2646 PF03668 P-loop ATPase protein family TVNIR_2648 PF00381 PTS HPr component phosphorylation site TVNIR_2650 PF00085 Thioredoxin TVNIR_2652 PF02441 Flavoprotein TVNIR_2653 PF01225 Mur ligase family, catalytic domain TVNIR_2653 PF02875 Mur ligase family, glutamate ligase domain TVNIR_2653 PF08245 Mur ligase middle domain TVNIR_2655 PF04333 MlaA lipoprotein TVNIR_2656 PF00764 Arginosuccinate synthase TVNIR_2658 PF00005 ABC transporter TVNIR_2659 PF01032 FecCD transport family TVNIR_2664 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_2664 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVNIR_2665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TVNIR_2665 PF02817 e3 binding domain TVNIR_2665 PF00364 Biotin-requiring enzyme TVNIR_2666 PF17831 Pyruvate dehydrogenase E1 component middle domain TVNIR_2666 PF00456 Transketolase, thiamine diphosphate binding domain TVNIR_2668 PF00929 Exonuclease TVNIR_2669 PF00462 Glutaredoxin TVNIR_2670 PF01926 50S ribosome-binding GTPase TVNIR_2670 PF06071 Protein of unknown function (DUF933) TVNIR_2671 PF01195 Peptidyl-tRNA hydrolase TVNIR_2672 PF14693 Ribosomal protein TL5, C-terminal domain TVNIR_2672 PF01386 Ribosomal L25p family TVNIR_2673 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TVNIR_2673 PF14572 Phosphoribosyl synthetase-associated domain TVNIR_2674 PF00288 GHMP kinases N terminal domain TVNIR_2674 PF08544 GHMP kinases C terminal TVNIR_2677 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TVNIR_2677 PF01488 Shikimate / quinate 5-dehydrogenase TVNIR_2677 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TVNIR_2678 PF00472 RF-1 domain TVNIR_2678 PF03462 PCRF domain TVNIR_2679 PF17827 PrmC N-terminal domain TVNIR_2679 PF05175 Methyltransferase small domain TVNIR_2681 PF00899 ThiF family TVNIR_2682 PF01430 Hsp33 protein TVNIR_2683 PF02934 GatB/GatE catalytic domain TVNIR_2683 PF02637 GatB domain TVNIR_2684 PF01425 Amidase TVNIR_2686 PF02686 Glu-tRNAGln amidotransferase C subunit TVNIR_2688 PF04085 rod shape-determining protein MreC TVNIR_2689 PF04093 rod shape-determining protein MreD TVNIR_2690 PF00570 HRDC domain TVNIR_2690 PF01612 3'-5' exonuclease TVNIR_2693 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TVNIR_2694 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TVNIR_2696 PF01370 NAD dependent epimerase/dehydratase family TVNIR_2697 PF01467 Cytidylyltransferase-like TVNIR_2697 PF00294 pfkB family carbohydrate kinase TVNIR_2698 PF13580 SIS domain TVNIR_2701 PF00534 Glycosyl transferases group 1 TVNIR_2701 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TVNIR_2707 PF05430 S-adenosyl-L-methionine-dependent methyltransferase TVNIR_2707 PF01266 FAD dependent oxidoreductase TVNIR_2710 PF13673 Acetyltransferase (GNAT) domain TVNIR_2712 PF00291 Pyridoxal-phosphate dependent enzyme TVNIR_2713 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TVNIR_2713 PF07730 Histidine kinase TVNIR_2713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2713 PF00672 HAMP domain TVNIR_2713 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TVNIR_2713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2713 PF00672 HAMP domain TVNIR_2713 PF07730 Histidine kinase TVNIR_2714 PF00072 Response regulator receiver domain TVNIR_2714 PF00196 Bacterial regulatory proteins, luxR family TVNIR_2716 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVNIR_2716 PF14824 Sirohaem biosynthesis protein central TVNIR_2716 PF10414 Sirohaem synthase dimerisation region TVNIR_2717 PF00462 Glutaredoxin TVNIR_2720 PF10417 C-terminal domain of 1-Cys peroxiredoxin TVNIR_2720 PF00578 AhpC/TSA family TVNIR_2722 PF01368 DHH family TVNIR_2722 PF02272 DHHA1 domain TVNIR_2722 PF17768 RecJ OB domain TVNIR_2723 PF00929 Exonuclease TVNIR_2724 PF00075 RNase H TVNIR_2726 PF01464 Transglycosylase SLT domain TVNIR_2732 PF01894 Uncharacterised protein family UPF0047 TVNIR_2736 PF03144 Elongation factor Tu domain 2 TVNIR_2736 PF00009 Elongation factor Tu GTP binding domain TVNIR_2736 PF03764 Elongation factor G, domain IV TVNIR_2736 PF14492 Elongation Factor G, domain II TVNIR_2736 PF00679 Elongation factor G C-terminus TVNIR_2737 PF08241 Methyltransferase domain TVNIR_2741 PF03150 Di-haem cytochrome c peroxidase TVNIR_2743 PF02472 Biopolymer transport protein ExbD/TolR TVNIR_2744 PF01618 MotA/TolQ/ExbB proton channel family TVNIR_2745 PF03544 Gram-negative bacterial TonB protein C-terminal TVNIR_2748 PF00593 TonB dependent receptor TVNIR_2748 PF07715 TonB-dependent Receptor Plug Domain TVNIR_2750 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TVNIR_2750 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_2750 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVNIR_2752 PF00158 Sigma-54 interaction domain TVNIR_2752 PF00072 Response regulator receiver domain TVNIR_2752 PF02954 Bacterial regulatory protein, Fis family TVNIR_2753 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_2753 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2753 PF02743 Cache domain TVNIR_2756 PF00005 ABC transporter TVNIR_2757 PF02687 FtsX-like permease family TVNIR_2757 PF12704 MacB-like periplasmic core domain TVNIR_2758 PF00005 ABC transporter TVNIR_2759 PF02687 FtsX-like permease family TVNIR_2759 PF12704 MacB-like periplasmic core domain TVNIR_2765 PF01914 MarC family integral membrane protein TVNIR_2766 PF02954 Bacterial regulatory protein, Fis family TVNIR_2766 PF00072 Response regulator receiver domain TVNIR_2766 PF00158 Sigma-54 interaction domain TVNIR_2769 PF00216 Bacterial DNA-binding protein TVNIR_2772 PF02190 ATP-dependent protease La (LON) substrate-binding domain TVNIR_2772 PF05362 Lon protease (S16) C-terminal proteolytic domain TVNIR_2772 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_2773 PF06689 ClpX C4-type zinc finger TVNIR_2773 PF10431 C-terminal, D2-small domain, of ClpB protein TVNIR_2773 PF07724 AAA domain (Cdc48 subfamily) TVNIR_2774 PF00574 Clp protease TVNIR_2775 PF05697 Bacterial trigger factor protein (TF) TVNIR_2775 PF05698 Bacterial trigger factor protein (TF) C-terminus TVNIR_2775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_2776 PF01926 50S ribosome-binding GTPase TVNIR_2776 PF16360 GTP-binding GTPase Middle Region TVNIR_2776 PF13167 GTP-binding GTPase N-terminal TVNIR_2777 PF17209 Hfq protein TVNIR_2779 PF08676 MutL C terminal dimerisation domain TVNIR_2779 PF01119 DNA mismatch repair protein, C-terminal domain TVNIR_2780 PF11741 AMIN domain TVNIR_2780 PF01520 N-acetylmuramoyl-L-alanine amidase TVNIR_2781 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TVNIR_2782 PF03853 YjeF-related protein N-terminus TVNIR_2782 PF01256 Carbohydrate kinase TVNIR_2783 PF08331 Domain of unknown function (DUF1730) TVNIR_2784 PF01751 Toprim domain TVNIR_2784 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_2784 PF00986 DNA gyrase B subunit, carboxyl terminus TVNIR_2784 PF00204 DNA gyrase B TVNIR_2785 PF00085 Thioredoxin TVNIR_2787 PF02899 Phage integrase, N-terminal SAM-like domain TVNIR_2787 PF00589 Phage integrase family TVNIR_2788 PF16200 C-terminal region of band_7 TVNIR_2788 PF01145 SPFH domain / Band 7 family TVNIR_2790 PF12804 MobA-like NTP transferase domain TVNIR_2791 PF03205 Molybdopterin guanine dinucleotide synthesis protein B TVNIR_2792 PF03453 MoeA N-terminal region (domain I and II) TVNIR_2792 PF03454 MoeA C-terminal region (domain IV) TVNIR_2792 PF00994 Probable molybdopterin binding domain TVNIR_2794 PF00128 Alpha amylase, catalytic domain TVNIR_2798 PF00005 ABC transporter TVNIR_2800 PF00545 ribonuclease TVNIR_2801 PF00472 RF-1 domain TVNIR_2802 PF00294 pfkB family carbohydrate kinase TVNIR_2804 PF13472 GDSL-like Lipase/Acylhydrolase family TVNIR_2805 PF02028 BCCT, betaine/carnitine/choline family transporter TVNIR_2808 PF00342 Phosphoglucose isomerase TVNIR_2809 PF00534 Glycosyl transferases group 1 TVNIR_2809 PF08323 Starch synthase catalytic domain TVNIR_2810 PF00311 Phosphoenolpyruvate carboxylase TVNIR_2811 PF02261 Aspartate decarboxylase TVNIR_2812 PF02569 Pantoate-beta-alanine ligase TVNIR_2813 PF02548 Ketopantoate hydroxymethyltransferase TVNIR_2814 PF01712 Deoxynucleoside kinase TVNIR_2815 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TVNIR_2816 PF01743 Poly A polymerase head domain TVNIR_2816 PF12626 Polymerase A arginine-rich C-terminus TVNIR_2816 PF12627 Probable RNA and SrmB- binding site of polymerase A TVNIR_2817 PF00293 NUDIX domain TVNIR_2818 PF01479 S4 domain TVNIR_2819 PF13417 Glutathione S-transferase, N-terminal domain TVNIR_2819 PF00043 Glutathione S-transferase, C-terminal domain TVNIR_2824 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TVNIR_2824 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TVNIR_2825 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TVNIR_2825 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TVNIR_2826 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TVNIR_2829 PF12419 SNF2 Helicase protein TVNIR_2829 PF00176 SNF2 family N-terminal domain TVNIR_2829 PF00271 Helicase conserved C-terminal domain TVNIR_2837 PF01695 IstB-like ATP binding protein TVNIR_2838 PF01695 IstB-like ATP binding protein TVNIR_2845 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ TVNIR_2846 PF01527 Transposase TVNIR_2848 PF01209 ubiE/COQ5 methyltransferase family TVNIR_2849 PF00348 Polyprenyl synthetase TVNIR_2853 PF13732 Domain of unknown function (DUF4162) TVNIR_2853 PF00005 ABC transporter TVNIR_2854 PF01061 ABC-2 type transporter TVNIR_2855 PF00144 Beta-lactamase TVNIR_2856 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TVNIR_2857 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TVNIR_2858 PF02641 Uncharacterized ACR, COG1993 TVNIR_2867 PF00144 Beta-lactamase TVNIR_2869 PF00589 Phage integrase family TVNIR_2869 PF13495 Phage integrase, N-terminal SAM-like domain TVNIR_2870 PF04986 Putative transposase TVNIR_2870 PF14319 Transposase zinc-binding domain TVNIR_2872 PF04551 GcpE protein TVNIR_2873 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TVNIR_2873 PF00925 GTP cyclohydrolase II TVNIR_2875 PF00677 Lumazine binding domain TVNIR_2876 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TVNIR_2876 PF01872 RibD C-terminal domain TVNIR_2877 PF03477 ATP cone domain TVNIR_2878 PF00464 Serine hydroxymethyltransferase TVNIR_2882 PF07311 Dodecin TVNIR_2885 PF00266 Aminotransferase class-V TVNIR_2888 PF00535 Glycosyl transferase family 2 TVNIR_2889 PF00970 Oxidoreductase FAD-binding domain TVNIR_2889 PF00175 Oxidoreductase NAD-binding domain TVNIR_2889 PF00111 2Fe-2S iron-sulfur cluster binding domain TVNIR_2891 PF02954 Bacterial regulatory protein, Fis family TVNIR_2891 PF00158 Sigma-54 interaction domain TVNIR_2891 PF00072 Response regulator receiver domain TVNIR_2894 PF12697 Alpha/beta hydrolase family TVNIR_2894 PF08241 Methyltransferase domain TVNIR_2895 PF03050 Transposase IS66 family TVNIR_2895 PF13007 Transposase C of IS166 homeodomain TVNIR_2895 PF13005 zinc-finger binding domain of transposase IS66 TVNIR_2895 PF13817 IS66 C-terminal element TVNIR_2898 PF00920 Dehydratase family TVNIR_2901 PF03641 Possible lysine decarboxylase TVNIR_2901 PF11892 Domain of unknown function (DUF3412) TVNIR_2901 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases TVNIR_2906 PF01609 Transposase DDE domain TVNIR_2906 PF02281 Transposase Tn5 dimerisation domain TVNIR_2906 PF14706 Transposase DNA-binding TVNIR_2914 PF00850 Histone deacetylase domain TVNIR_2915 PF13607 Succinyl-CoA ligase like flavodoxin domain TVNIR_2915 PF13380 CoA binding domain TVNIR_2915 PF00583 Acetyltransferase (GNAT) family TVNIR_2918 PF03073 TspO/MBR family TVNIR_2920 PF01934 Protein of unknown function DUF86 TVNIR_2922 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVNIR_2923 PF00873 AcrB/AcrD/AcrF family TVNIR_2925 PF00768 D-alanyl-D-alanine carboxypeptidase TVNIR_2926 PF09335 SNARE associated Golgi protein TVNIR_2927 PF12002 MgsA AAA+ ATPase C terminal TVNIR_2927 PF16193 AAA C-terminal domain TVNIR_2927 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_2928 PF03548 Outer membrane lipoprotein carrier protein LolA TVNIR_2929 PF01580 FtsK/SpoIIIE family TVNIR_2929 PF09397 Ftsk gamma domain TVNIR_2929 PF17854 FtsK alpha domain TVNIR_2929 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TVNIR_2930 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_2932 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TVNIR_2933 PF04030 D-arabinono-1,4-lactone oxidase TVNIR_2933 PF01565 FAD binding domain TVNIR_2934 PF00106 short chain dehydrogenase TVNIR_2936 PF07995 Glucose / Sorbosone dehydrogenase TVNIR_2937 PF07733 Bacterial DNA polymerase III alpha NTPase domain TVNIR_2937 PF02811 PHP domain TVNIR_2937 PF01336 OB-fold nucleic acid binding domain TVNIR_2937 PF14579 Helix-hairpin-helix motif TVNIR_2937 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TVNIR_2938 PF13686 DsrE/DsrF/DrsH-like family TVNIR_2944 PF00376 MerR family regulatory protein TVNIR_2944 PF13614 AAA domain TVNIR_2947 PF00873 AcrB/AcrD/AcrF family TVNIR_2950 PF02954 Bacterial regulatory protein, Fis family TVNIR_2950 PF00158 Sigma-54 interaction domain TVNIR_2950 PF02830 V4R domain TVNIR_2950 PF06505 Activator of aromatic catabolism TVNIR_2951 PF00291 Pyridoxal-phosphate dependent enzyme TVNIR_2952 PF00742 Homoserine dehydrogenase TVNIR_2952 PF03447 Homoserine dehydrogenase, NAD binding domain TVNIR_2952 PF01842 ACT domain TVNIR_2953 PF00155 Aminotransferase class I and II TVNIR_2954 PF04545 Sigma-70, region 4 TVNIR_2954 PF00140 Sigma-70 factor, region 1.2 TVNIR_2954 PF04542 Sigma-70 region 2 TVNIR_2954 PF04539 Sigma-70 region 3 TVNIR_2956 PF01551 Peptidase family M23 TVNIR_2956 PF01476 LysM domain TVNIR_2957 PF09335 SNARE associated Golgi protein TVNIR_2959 PF01975 Survival protein SurE TVNIR_2962 PF13426 PAS domain TVNIR_2962 PF01740 STAS domain TVNIR_2963 PF01142 tRNA pseudouridine synthase D (TruD) TVNIR_2964 PF00814 Glycoprotease family TVNIR_2965 PF13307 Helicase C-terminal domain TVNIR_2965 PF04851 Type III restriction enzyme, res subunit TVNIR_2967 PF00905 Penicillin binding protein transpeptidase domain TVNIR_2967 PF00912 Transglycosylase TVNIR_2967 PF14814 Bifunctional transglycosylase second domain TVNIR_2970 PF00877 NlpC/P60 family TVNIR_2972 PF00994 Probable molybdopterin binding domain TVNIR_2976 PF02657 Fe-S metabolism associated domain TVNIR_2978 PF03466 LysR substrate binding domain TVNIR_2978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_2991 PF00101 Ribulose bisphosphate carboxylase, small chain TVNIR_2992 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain TVNIR_2992 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain TVNIR_2994 PF14760 Rnk N-terminus TVNIR_2994 PF01272 Transcription elongation factor, GreA/GreB, C-term TVNIR_2996 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_2996 PF03707 Bacterial signalling protein N terminal repeat TVNIR_2996 PF00563 EAL domain TVNIR_3000 PF07152 YaeQ protein TVNIR_3002 PF03466 LysR substrate binding domain TVNIR_3002 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_3003 PF01717 Cobalamin-independent synthase, Catalytic domain TVNIR_3003 PF08267 Cobalamin-independent synthase, N-terminal domain TVNIR_3008 PF16998 17 kDa outer membrane surface antigen TVNIR_3008 PF05433 Glycine zipper 2TM domain TVNIR_3011 PF00034 Cytochrome c TVNIR_3014 PF02630 SCO1/SenC TVNIR_3017 PF04143 Sulphur transport TVNIR_3018 PF01040 UbiA prenyltransferase family TVNIR_3019 PF02628 Cytochrome oxidase assembly protein TVNIR_3023 PF00510 Cytochrome c oxidase subunit III TVNIR_3026 PF00115 Cytochrome C and Quinol oxidase polypeptide I TVNIR_3027 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TVNIR_3027 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TVNIR_3029 PF13614 AAA domain TVNIR_3031 PF08298 PrkA AAA domain TVNIR_3031 PF06798 PrkA serine protein kinase C-terminal domain TVNIR_3032 PF04285 Protein of unknown function (DUF444) TVNIR_3033 PF04293 SpoVR like protein TVNIR_3034 PF07885 Ion channel TVNIR_3039 PF03330 Lytic transglycolase TVNIR_3043 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TVNIR_3043 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_3047 PF01596 O-methyltransferase TVNIR_3049 PF13406 Transglycosylase SLT domain TVNIR_3052 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TVNIR_3052 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TVNIR_3053 PF02627 Carboxymuconolactone decarboxylase family TVNIR_3055 PF12833 Helix-turn-helix domain TVNIR_3055 PF02311 AraC-like ligand binding domain TVNIR_3058 PF02525 Flavodoxin-like fold TVNIR_3060 PF03705 CheR methyltransferase, all-alpha domain TVNIR_3060 PF01739 CheR methyltransferase, SAM binding domain TVNIR_3061 PF09587 Bacterial capsule synthesis protein PGA_cap TVNIR_3064 PF04389 Peptidase family M28 TVNIR_3066 PF02770 Acyl-CoA dehydrogenase, middle domain TVNIR_3066 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TVNIR_3066 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TVNIR_3067 PF12833 Helix-turn-helix domain TVNIR_3069 PF00753 Metallo-beta-lactamase superfamily TVNIR_3069 PF00581 Rhodanese-like domain TVNIR_3070 PF00274 Fructose-bisphosphate aldolase class-I TVNIR_3072 PF00920 Dehydratase family TVNIR_3078 PF16295 Tetracyclin repressor-like, C-terminal domain TVNIR_3078 PF00440 Bacterial regulatory proteins, tetR family TVNIR_3083 PF01592 NifU-like N terminal domain TVNIR_3084 PF00266 Aminotransferase class-V TVNIR_3085 PF02540 NAD synthase TVNIR_3085 PF00117 Glutamine amidotransferase class-I TVNIR_3085 PF00958 GMP synthase C terminal domain TVNIR_3086 PF00478 IMP dehydrogenase / GMP reductase domain TVNIR_3086 PF00571 CBS domain TVNIR_3088 PF13742 OB-fold nucleic acid binding domain TVNIR_3088 PF02601 Exonuclease VII, large subunit TVNIR_3089 PF13419 Haloacid dehalogenase-like hydrolase TVNIR_3090 PF01258 Prokaryotic dksA/traR C4-type zinc finger TVNIR_3091 PF00749 tRNA synthetases class I (E and Q), catalytic domain TVNIR_3093 PF00989 PAS fold TVNIR_3093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_3093 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_3093 PF08447 PAS fold TVNIR_3094 PF02954 Bacterial regulatory protein, Fis family TVNIR_3094 PF00072 Response regulator receiver domain TVNIR_3094 PF00158 Sigma-54 interaction domain TVNIR_3097 PF00474 Sodium:solute symporter family TVNIR_3100 PF13193 AMP-binding enzyme C-terminal domain TVNIR_3100 PF00501 AMP-binding enzyme TVNIR_3100 PF16177 Acetyl-coenzyme A synthetase N-terminus TVNIR_3103 PF14403 Circularly permuted ATP-grasp type 2 TVNIR_3104 PF08241 Methyltransferase domain TVNIR_3106 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TVNIR_3106 PF00013 KH domain TVNIR_3106 PF00575 S1 RNA binding domain TVNIR_3106 PF01138 3' exoribonuclease family, domain 1 TVNIR_3106 PF03725 3' exoribonuclease family, domain 2 TVNIR_3107 PF00312 Ribosomal protein S15 TVNIR_3108 PF01509 TruB family pseudouridylate synthase (N terminal domain) TVNIR_3108 PF16198 tRNA pseudouridylate synthase B C-terminal domain TVNIR_3108 PF09157 Pseudouridine synthase II TruB, C-terminal TVNIR_3109 PF02033 Ribosome-binding factor A TVNIR_3110 PF00009 Elongation factor Tu GTP binding domain TVNIR_3110 PF08364 Bacterial translation initiation factor IF-2 associated region TVNIR_3110 PF03144 Elongation factor Tu domain 2 TVNIR_3110 PF11987 Translation-initiation factor 2 TVNIR_3110 PF04760 Translation initiation factor IF-2, N-terminal region TVNIR_3111 PF08529 NusA N-terminal domain TVNIR_3111 PF13184 NusA-like KH domain TVNIR_3112 PF17384 RimP C-terminal SH3 domain TVNIR_3112 PF02576 RimP N-terminal domain TVNIR_3113 PF00361 Proton-conducting membrane transporter TVNIR_3114 PF00361 Proton-conducting membrane transporter TVNIR_3115 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TVNIR_3115 PF00361 Proton-conducting membrane transporter TVNIR_3116 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TVNIR_3117 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TVNIR_3118 PF12838 4Fe-4S dicluster domain TVNIR_3119 PF00146 NADH dehydrogenase TVNIR_3120 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TVNIR_3120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TVNIR_3120 PF00384 Molybdopterin oxidoreductase TVNIR_3121 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TVNIR_3121 PF10531 SLBB domain TVNIR_3121 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TVNIR_3123 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TVNIR_3124 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TVNIR_3125 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TVNIR_3126 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TVNIR_3127 PF03840 Preprotein translocase SecG subunit TVNIR_3128 PF00121 Triosephosphate isomerase TVNIR_3129 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVNIR_3129 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVNIR_3129 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVNIR_3129 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVNIR_3130 PF00809 Pterin binding enzyme TVNIR_3131 PF00004 ATPase family associated with various cellular activities (AAA) TVNIR_3131 PF17862 AAA+ lid domain TVNIR_3131 PF06480 FtsH Extracellular TVNIR_3131 PF01434 Peptidase family M41 TVNIR_3132 PF01728 FtsJ-like methyltransferase TVNIR_3133 PF03449 Transcription elongation factor, N-terminal TVNIR_3133 PF01272 Transcription elongation factor, GreA/GreB, C-term TVNIR_3134 PF01985 CRS1 / YhbY (CRM) domain TVNIR_3135 PF02142 MGS-like domain TVNIR_3135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TVNIR_3135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TVNIR_3136 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TVNIR_3136 PF00117 Glutamine amidotransferase class-I TVNIR_3138 PF05173 Dihydrodipicolinate reductase, C-terminus TVNIR_3138 PF01113 Dihydrodipicolinate reductase, N-terminus TVNIR_3139 PF12832 MFS_1 like family TVNIR_3140 PF01264 Chorismate synthase TVNIR_3142 PF05175 Methyltransferase small domain TVNIR_3143 PF02666 Phosphatidylserine decarboxylase TVNIR_3145 PF00152 tRNA synthetases class II (D, K and N) TVNIR_3146 PF01132 Elongation factor P (EF-P) OB domain TVNIR_3146 PF09285 Elongation factor P, C-terminal TVNIR_3146 PF08207 Elongation factor P (EF-P) KOW-like domain TVNIR_3147 PF04055 Radical SAM superfamily TVNIR_3149 PF05231 MASE1 TVNIR_3149 PF00563 EAL domain TVNIR_3150 PF00226 DnaJ domain TVNIR_3150 PF01556 DnaJ C terminal domain TVNIR_3150 PF00684 DnaJ central domain TVNIR_3151 PF00012 Hsp70 protein TVNIR_3152 PF01025 GrpE TVNIR_3153 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TVNIR_3153 PF01628 HrcA protein C terminal domain TVNIR_3154 PF01513 ATP-NAD kinase TVNIR_3155 PF02463 RecF/RecN/SMC N terminal domain TVNIR_3156 PF01475 Ferric uptake regulator family TVNIR_3157 PF04355 SmpA / OmlA family TVNIR_3158 PF03658 RnfH family Ubiquitin TVNIR_3159 PF03364 Polyketide cyclase / dehydrase and lipid transport TVNIR_3160 PF00209 Sodium:neurotransmitter symporter family TVNIR_3161 PF01668 SmpB protein TVNIR_3162 PF00034 Cytochrome c TVNIR_3162 PF03150 Di-haem cytochrome c peroxidase TVNIR_3165 PF00005 ABC transporter TVNIR_3165 PF12848 ABC transporter TVNIR_3169 PF07683 Cobalamin synthesis protein cobW C-terminal domain TVNIR_3169 PF02492 CobW/HypB/UreG, nucleotide-binding domain TVNIR_3173 PF00271 Helicase conserved C-terminal domain TVNIR_3173 PF00176 SNF2 family N-terminal domain TVNIR_3178 PF02586 SOS response associated peptidase (SRAP) TVNIR_3180 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TVNIR_3180 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TVNIR_3181 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TVNIR_3182 PF04305 Protein of unknown function (DUF455) TVNIR_3183 PF00149 Calcineurin-like phosphoesterase TVNIR_3184 PF01053 Cys/Met metabolism PLP-dependent enzyme TVNIR_3185 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_3185 PF03707 Bacterial signalling protein N terminal repeat TVNIR_3185 PF00563 EAL domain TVNIR_3187 PF00380 Ribosomal protein S9/S16 TVNIR_3188 PF00572 Ribosomal protein L13 TVNIR_3190 PF02954 Bacterial regulatory protein, Fis family TVNIR_3190 PF00158 Sigma-54 interaction domain TVNIR_3190 PF00072 Response regulator receiver domain TVNIR_3191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_3191 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_3192 PF00753 Metallo-beta-lactamase superfamily TVNIR_3193 PF01435 Peptidase family M48 TVNIR_3194 PF03989 DNA gyrase C-terminal domain, beta-propeller TVNIR_3194 PF00521 DNA gyrase/topoisomerase IV, subunit A TVNIR_3202 PF00883 Cytosol aminopeptidase family, catalytic domain TVNIR_3202 PF02789 Cytosol aminopeptidase family, N-terminal domain TVNIR_3203 PF04364 DNA polymerase III chi subunit, HolC TVNIR_3204 PF00117 Glutamine amidotransferase class-I TVNIR_3204 PF00958 GMP synthase C terminal domain TVNIR_3204 PF02540 NAD synthase TVNIR_3205 PF10458 Valyl tRNA synthetase tRNA binding arm TVNIR_3205 PF00133 tRNA synthetases class I (I, L, M and V) TVNIR_3205 PF08264 Anticodon-binding domain of tRNA TVNIR_3208 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family TVNIR_3210 PF09382 RQC domain TVNIR_3210 PF16124 RecQ zinc-binding TVNIR_3210 PF00570 HRDC domain TVNIR_3210 PF00271 Helicase conserved C-terminal domain TVNIR_3210 PF00270 DEAD/DEAH box helicase TVNIR_3211 PF00664 ABC transporter transmembrane region TVNIR_3211 PF00005 ABC transporter TVNIR_3212 PF01844 HNH endonuclease TVNIR_3215 PF00009 Elongation factor Tu GTP binding domain TVNIR_3215 PF03144 Elongation factor Tu domain 2 TVNIR_3215 PF16658 Class II release factor RF3, C-terminal domain TVNIR_3218 PF00583 Acetyltransferase (GNAT) family TVNIR_3219 PF03167 Uracil DNA glycosylase superfamily TVNIR_3220 PF00682 HMGL-like TVNIR_3220 PF08502 LeuA allosteric (dimerisation) domain TVNIR_3221 PF01066 CDP-alcohol phosphatidyltransferase TVNIR_3223 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TVNIR_3223 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TVNIR_3224 PF10369 Small subunit of acetolactate synthase TVNIR_3225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TVNIR_3225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TVNIR_3225 PF00205 Thiamine pyrophosphate enzyme, central domain TVNIR_3231 PF03099 Biotin/lipoate A/B protein ligase family TVNIR_3231 PF10437 Bacterial lipoate protein ligase C-terminus TVNIR_3240 PF00593 TonB dependent receptor TVNIR_3240 PF07715 TonB-dependent Receptor Plug Domain TVNIR_3241 PF01597 Glycine cleavage H-protein TVNIR_3243 PF01597 Glycine cleavage H-protein TVNIR_3244 PF02754 Cysteine-rich domain TVNIR_3247 PF01593 Flavin containing amine oxidoreductase TVNIR_3250 PF01206 Sulfurtransferase TusA TVNIR_3251 PF00581 Rhodanese-like domain TVNIR_3253 PF13181 Tetratricopeptide repeat TVNIR_3253 PF01435 Peptidase family M48 TVNIR_3254 PF00149 Calcineurin-like phosphoesterase TVNIR_3254 PF02872 5'-nucleotidase, C-terminal domain TVNIR_3255 PF00842 Alanine racemase, C-terminal domain TVNIR_3255 PF01168 Alanine racemase, N-terminal domain TVNIR_3256 PF00772 DnaB-like helicase N terminal domain TVNIR_3256 PF03796 DnaB-like helicase C terminal domain TVNIR_3257 PF01281 Ribosomal protein L9, N-terminal domain TVNIR_3257 PF03948 Ribosomal protein L9, C-terminal domain TVNIR_3259 PF01084 Ribosomal protein S18 TVNIR_3260 PF01250 Ribosomal protein S6 TVNIR_3261 PF08032 RNA 2'-O ribose methyltransferase substrate binding TVNIR_3261 PF00588 SpoU rRNA Methylase family TVNIR_3262 PF08461 Ribonuclease R winged-helix domain TVNIR_3262 PF17876 Cold shock domain TVNIR_3262 PF08206 Ribonuclease B OB domain TVNIR_3262 PF00575 S1 RNA binding domain TVNIR_3262 PF00773 RNB domain TVNIR_3263 PF00709 Adenylosuccinate synthetase TVNIR_3264 PF13393 Histidyl-tRNA synthetase TVNIR_3266 PF01145 SPFH domain / Band 7 family TVNIR_3267 PF12221 Bacterial membrane protein N terminal TVNIR_3267 PF01145 SPFH domain / Band 7 family TVNIR_3268 PF03949 Malic enzyme, NAD binding domain TVNIR_3268 PF00390 Malic enzyme, N-terminal domain TVNIR_3269 PF13409 Glutathione S-transferase, N-terminal domain TVNIR_3275 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal TVNIR_3275 PF00775 Dioxygenase TVNIR_3281 PF01471 Putative peptidoglycan binding domain TVNIR_3281 PF13401 AAA domain TVNIR_3286 PF00293 NUDIX domain TVNIR_3287 PF00580 UvrD/REP helicase N-terminal domain TVNIR_3287 PF13361 UvrD-like helicase C-terminal domain TVNIR_3288 PF08378 Nuclease-related domain TVNIR_3291 PF01555 DNA methylase TVNIR_3307 PF07804 HipA-like C-terminal domain TVNIR_3307 PF13657 HipA N-terminal domain TVNIR_3310 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TVNIR_3316 PF12728 Helix-turn-helix domain TVNIR_3319 PF00176 SNF2 family N-terminal domain TVNIR_3319 PF00271 Helicase conserved C-terminal domain TVNIR_3319 PF12419 SNF2 Helicase protein TVNIR_3321 PF12728 Helix-turn-helix domain TVNIR_3323 PF05199 GMC oxidoreductase TVNIR_3323 PF00732 GMC oxidoreductase TVNIR_3329 PF01261 Xylose isomerase-like TIM barrel TVNIR_3330 PF03928 Haem-degrading TVNIR_3333 PF12146 Serine aminopeptidase, S33 TVNIR_3335 PF01618 MotA/TolQ/ExbB proton channel family TVNIR_3341 PF00285 Citrate synthase, C-terminal domain TVNIR_3342 PF03972 MmgE/PrpD family TVNIR_3343 PF00753 Metallo-beta-lactamase superfamily TVNIR_3343 PF16123 Hydroxyacylglutathione hydrolase C-terminus TVNIR_3344 PF00107 Zinc-binding dehydrogenase TVNIR_3348 PF08240 Alcohol dehydrogenase GroES-like domain TVNIR_3348 PF00107 Zinc-binding dehydrogenase TVNIR_3355 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_3360 PF00478 IMP dehydrogenase / GMP reductase domain TVNIR_3360 PF00571 CBS domain TVNIR_3363 PF06100 MCRA family TVNIR_3364 PF01641 SelR domain TVNIR_3365 PF06508 Queuosine biosynthesis protein QueC TVNIR_3366 PF04055 Radical SAM superfamily TVNIR_3368 PF00691 OmpA family TVNIR_3369 PF07676 WD40-like Beta Propeller Repeat TVNIR_3369 PF04052 TolB amino-terminal domain TVNIR_3371 PF02472 Biopolymer transport protein ExbD/TolR TVNIR_3372 PF01618 MotA/TolQ/ExbB proton channel family TVNIR_3373 PF03061 Thioesterase superfamily TVNIR_3374 PF05491 RuvB C-terminal winged helix domain TVNIR_3374 PF17864 RuvB AAA lid domain TVNIR_3374 PF05496 Holliday junction DNA helicase RuvB P-loop domain TVNIR_3375 PF07499 RuvA, C-terminal domain TVNIR_3375 PF01330 RuvA N terminal domain TVNIR_3376 PF02075 Crossover junction endodeoxyribonuclease RuvC TVNIR_3377 PF01709 Transcriptional regulator TVNIR_3379 PF02938 GAD domain TVNIR_3379 PF01336 OB-fold nucleic acid binding domain TVNIR_3379 PF00152 tRNA synthetases class II (D, K and N) TVNIR_3385 PF00106 short chain dehydrogenase TVNIR_3386 PF07670 Nucleoside recognition TVNIR_3387 PF13091 PLD-like domain TVNIR_3387 PF13396 Phospholipase_D-nuclease N-terminal TVNIR_3388 PF12146 Serine aminopeptidase, S33 TVNIR_3389 PF00873 AcrB/AcrD/AcrF family TVNIR_3390 PF00529 HlyD membrane-fusion protein of T1SS TVNIR_3390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVNIR_3392 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TVNIR_3392 PF03129 Anticodon binding domain TVNIR_3392 PF04073 Aminoacyl-tRNA editing domain TVNIR_3393 PF03960 ArsC family TVNIR_3394 PF03358 NADPH-dependent FMN reductase TVNIR_3396 PF00308 Bacterial dnaA protein TVNIR_3397 PF01066 CDP-alcohol phosphatidyltransferase TVNIR_3399 PF02769 AIR synthase related protein, C-terminal domain TVNIR_3399 PF00586 AIR synthase related protein, N-terminal domain TVNIR_3400 PF00551 Formyl transferase TVNIR_3402 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVNIR_3402 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_3403 PF01523 Putative modulator of DNA gyrase TVNIR_3405 PF01523 Putative modulator of DNA gyrase TVNIR_3406 PF00795 Carbon-nitrogen hydrolase TVNIR_3408 PF10150 Ribonuclease E/G family TVNIR_3408 PF00575 S1 RNA binding domain TVNIR_3409 PF01594 AI-2E family transporter TVNIR_3412 PF03466 LysR substrate binding domain TVNIR_3412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVNIR_3415 PF08496 Peptidase family S49 N-terminal TVNIR_3415 PF01343 Peptidase family S49 TVNIR_3416 PF00183 Hsp90 protein TVNIR_3416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_3417 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TVNIR_3421 PF01245 Ribosomal protein L19 TVNIR_3422 PF01746 tRNA (Guanine-1)-methyltransferase TVNIR_3423 PF01782 RimM N-terminal domain TVNIR_3423 PF05239 PRC-barrel domain TVNIR_3424 PF00886 Ribosomal protein S16 TVNIR_3425 PF00448 SRP54-type protein, GTPase domain TVNIR_3425 PF02978 Signal peptide binding domain TVNIR_3425 PF02881 SRP54-type protein, helical bundle domain TVNIR_3426 PF01578 Cytochrome C assembly protein TVNIR_3427 PF01595 Cyclin M transmembrane N-terminal domain TVNIR_3427 PF03471 Transporter associated domain TVNIR_3427 PF00571 CBS domain TVNIR_3428 PF18073 Rubredoxin metal binding domain TVNIR_3432 PF02915 Rubrerythrin TVNIR_3433 PF02609 Exonuclease VII small subunit TVNIR_3434 PF00348 Polyprenyl synthetase TVNIR_3435 PF02780 Transketolase, C-terminal domain TVNIR_3435 PF02779 Transketolase, pyrimidine binding domain TVNIR_3435 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TVNIR_3436 PF02562 PhoH-like protein TVNIR_3436 PF13638 PIN domain TVNIR_3437 PF00578 AhpC/TSA family TVNIR_3439 PF00701 Dihydrodipicolinate synthetase family TVNIR_3440 PF06804 NlpB/DapX lipoprotein TVNIR_3442 PF01479 S4 domain TVNIR_3442 PF00579 tRNA synthetases class I (W and Y) TVNIR_3443 PF01551 Peptidase family M23 TVNIR_3443 PF04225 Opacity-associated protein A LysM-like domain TVNIR_3444 PF03702 Anhydro-N-acetylmuramic acid kinase TVNIR_3445 PF01521 Iron-sulphur cluster biosynthesis TVNIR_3446 PF02774 Semialdehyde dehydrogenase, dimerisation domain TVNIR_3446 PF01118 Semialdehyde dehydrogenase, NAD binding domain TVNIR_3448 PF05524 PEP-utilising enzyme, N-terminal TVNIR_3448 PF02896 PEP-utilising enzyme, TIM barrel domain TVNIR_3448 PF00391 PEP-utilising enzyme, mobile domain TVNIR_3448 PF01590 GAF domain TVNIR_3449 PF00293 NUDIX domain TVNIR_3452 PF02581 Thiamine monophosphate synthase TVNIR_3452 PF08543 Phosphomethylpyrimidine kinase TVNIR_3453 PF02581 Thiamine monophosphate synthase TVNIR_3454 PF00202 Aminotransferase class-III TVNIR_3455 PF01925 Sulfite exporter TauE/SafE TVNIR_3456 PF11940 Domain of unknown function (DUF3458) Ig-like fold TVNIR_3456 PF01433 Peptidase family M1 domain TVNIR_3456 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TVNIR_3458 PF01026 TatD related DNase TVNIR_3459 PF01722 BolA-like protein TVNIR_3465 PF01202 Shikimate kinase TVNIR_3467 PF02369 Bacterial Ig-like domain (group 1) TVNIR_3467 PF09134 Invasin, domain 3 TVNIR_3467 PF11924 Inverse autotransporter, beta-domain TVNIR_3474 PF00905 Penicillin binding protein transpeptidase domain TVNIR_3474 PF17092 Penicillin-binding protein OB-like domain TVNIR_3474 PF00912 Transglycosylase TVNIR_3476 PF01208 Uroporphyrinogen decarboxylase (URO-D) TVNIR_3478 PF01165 Ribosomal protein S21 TVNIR_3479 PF01761 3-dehydroquinate synthase TVNIR_3480 PF13286 Phosphohydrolase-associated domain TVNIR_3480 PF01966 HD domain TVNIR_3482 PF00005 ABC transporter TVNIR_3483 PF01032 FecCD transport family TVNIR_3484 PF01497 Periplasmic binding protein TVNIR_3485 PF02654 Cobalamin-5-phosphate synthase TVNIR_3487 PF02277 Phosphoribosyltransferase TVNIR_3488 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TVNIR_3489 PF07685 CobB/CobQ-like glutamine amidotransferase domain TVNIR_3489 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TVNIR_3490 PF00155 Aminotransferase class I and II TVNIR_3491 PF17113 Regulatory signalling modulator protein AmpE TVNIR_3491 PF03186 CobD/Cbib protein TVNIR_3492 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TVNIR_3492 PF12557 Cob(I)alamin adenosyltransferase N terminal TVNIR_3494 PF00593 TonB dependent receptor TVNIR_3494 PF07715 TonB-dependent Receptor Plug Domain TVNIR_3495 PF10410 DnaB-helicase binding domain of primase TVNIR_3495 PF08275 DNA primase catalytic core, N-terminal domain TVNIR_3495 PF01807 CHC2 zinc finger TVNIR_3495 PF08278 DNA primase DnaG DnaB-binding TVNIR_3495 PF13662 Toprim domain TVNIR_3496 PF04545 Sigma-70, region 4 TVNIR_3496 PF04542 Sigma-70 region 2 TVNIR_3496 PF04539 Sigma-70 region 3 TVNIR_3496 PF04546 Sigma-70, non-essential region TVNIR_3496 PF03979 Sigma-70 factor, region 1.1 TVNIR_3496 PF00140 Sigma-70 factor, region 1.2 TVNIR_3499 PF02281 Transposase Tn5 dimerisation domain TVNIR_3499 PF14706 Transposase DNA-binding TVNIR_3499 PF01609 Transposase DDE domain TVNIR_3512 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) TVNIR_3512 PF01348 Type II intron maturase TVNIR_3515 PF01872 RibD C-terminal domain TVNIR_3516 PF08281 Sigma-70, region 4 TVNIR_3516 PF04542 Sigma-70 region 2 TVNIR_3518 PF03795 YCII-related domain TVNIR_3526 PF06505 Activator of aromatic catabolism TVNIR_3526 PF02954 Bacterial regulatory protein, Fis family TVNIR_3526 PF00158 Sigma-54 interaction domain TVNIR_3526 PF02830 V4R domain TVNIR_3528 PF00484 Carbonic anhydrase TVNIR_3539 PF01641 SelR domain TVNIR_3540 PF01625 Peptide methionine sulfoxide reductase TVNIR_3543 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase TVNIR_3544 PF00535 Glycosyl transferase family 2 TVNIR_3547 PF02464 Competence-damaged protein TVNIR_3547 PF18146 Damage-inducible protein CinA KH domain TVNIR_3547 PF00994 Probable molybdopterin binding domain TVNIR_3548 PF00762 Ferrochelatase TVNIR_3550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TVNIR_3550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TVNIR_3551 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TVNIR_3552 PF02233 NAD(P) transhydrogenase beta subunit TVNIR_3553 PF18074 Primosomal protein N C-terminal domain TVNIR_3553 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TVNIR_3553 PF00270 DEAD/DEAH box helicase TVNIR_3553 PF00271 Helicase conserved C-terminal domain TVNIR_3553 PF17764 3′ DNA-binding domain (3′BD) TVNIR_3555 PF00750 tRNA synthetases class I (R) TVNIR_3555 PF05746 DALR anticodon binding domain TVNIR_3555 PF03485 Arginyl tRNA synthetase N terminal domain TVNIR_3557 PF11898 Domain of unknown function (DUF3418) TVNIR_3557 PF00270 DEAD/DEAH box helicase TVNIR_3557 PF00271 Helicase conserved C-terminal domain TVNIR_3557 PF04408 Helicase associated domain (HA2) TVNIR_3557 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TVNIR_3559 PF03618 Kinase/pyrophosphorylase TVNIR_3560 PF00391 PEP-utilising enzyme, mobile domain TVNIR_3560 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TVNIR_3560 PF02896 PEP-utilising enzyme, TIM barrel domain TVNIR_3561 PF00497 Bacterial extracellular solute-binding proteins, family 3 TVNIR_3561 PF01464 Transglycosylase SLT domain TVNIR_3563 PF01475 Ferric uptake regulator family TVNIR_3565 PF07715 TonB-dependent Receptor Plug Domain TVNIR_3565 PF00593 TonB dependent receptor TVNIR_3568 PF00317 Ribonucleotide reductase, all-alpha domain TVNIR_3568 PF02867 Ribonucleotide reductase, barrel domain TVNIR_3568 PF03477 ATP cone domain TVNIR_3570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVNIR_3570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVNIR_3570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVNIR_3570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVNIR_3574 PF08448 PAS fold TVNIR_3574 PF00563 EAL domain TVNIR_3574 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_3575 PF00596 Class II Aldolase and Adducin N-terminal domain TVNIR_3576 PF13230 Glutamine amidotransferases class-II TVNIR_3578 PF13654 AAA domain TVNIR_3578 PF05362 Lon protease (S16) C-terminal proteolytic domain TVNIR_3580 PF17284 Spermidine synthase tetramerisation domain TVNIR_3585 PF01695 IstB-like ATP binding protein TVNIR_3588 PF04362 Bacterial Fe(2+) trafficking TVNIR_3589 PF00633 Helix-hairpin-helix motif TVNIR_3589 PF14815 NUDIX domain TVNIR_3589 PF00730 HhH-GPD superfamily base excision DNA repair protein TVNIR_3592 PF01967 MoaC family TVNIR_3593 PF02597 ThiS family TVNIR_3594 PF02391 MoaE protein TVNIR_3595 PF13180 PDZ domain TVNIR_3595 PF00595 PDZ domain TVNIR_3596 PF01556 DnaJ C terminal domain TVNIR_3596 PF00226 DnaJ domain TVNIR_3597 PF00011 Hsp20/alpha crystallin family TVNIR_3599 PF03755 YicC-like family, N-terminal region TVNIR_3599 PF08340 Domain of unknown function (DUF1732) TVNIR_3600 PF01138 3' exoribonuclease family, domain 1 TVNIR_3600 PF03725 3' exoribonuclease family, domain 2 TVNIR_3601 PF01725 Ham1 family TVNIR_3602 PF04055 Radical SAM superfamily TVNIR_3602 PF06969 HemN C-terminal domain TVNIR_3605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVNIR_3605 PF07497 Rho termination factor, RNA-binding domain TVNIR_3605 PF07498 Rho termination factor, N-terminal domain TVNIR_3606 PF00085 Thioredoxin TVNIR_3607 PF12300 ATP-dependent RNA helicase RhlB TVNIR_3607 PF00271 Helicase conserved C-terminal domain TVNIR_3607 PF00270 DEAD/DEAH box helicase TVNIR_3609 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVNIR_3611 PF00890 FAD binding domain TVNIR_3612 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit TVNIR_3612 PF13187 4Fe-4S dicluster domain TVNIR_3614 PF01747 ATP-sulfurylase TVNIR_3614 PF14306 PUA-like domain TVNIR_3618 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVNIR_3618 PF01568 Molydopterin dinucleotide binding domain TVNIR_3618 PF00384 Molybdopterin oxidoreductase TVNIR_3619 PF13247 4Fe-4S dicluster domain TVNIR_3619 PF12800 4Fe-4S binding domain TVNIR_3620 PF04976 DMSO reductase anchor subunit (DmsC) TVNIR_3622 PF05191 Adenylate kinase, active site lid TVNIR_3623 PF00365 Phosphofructokinase TVNIR_3624 PF06463 Molybdenum Cofactor Synthesis C TVNIR_3624 PF04055 Radical SAM superfamily TVNIR_3627 PF01743 Poly A polymerase head domain TVNIR_3627 PF12627 Probable RNA and SrmB- binding site of polymerase A TVNIR_3627 PF01966 HD domain TVNIR_3628 PF16925 Tetracyclin repressor-like, C-terminal domain TVNIR_3628 PF00440 Bacterial regulatory proteins, tetR family TVNIR_3630 PF02321 Outer membrane efflux protein TVNIR_3633 PF04204 Homoserine O-succinyltransferase TVNIR_3636 PF17176 tRNA-binding domain TVNIR_3636 PF05127 Helicase TVNIR_3636 PF08351 Domain of unknown function (DUF1726) TVNIR_3636 PF13718 GNAT acetyltransferase 2 TVNIR_3637 PF00313 'Cold-shock' DNA-binding domain TVNIR_3638 PF00120 Glutamine synthetase, catalytic domain TVNIR_3638 PF03951 Glutamine synthetase, beta-Grasp domain TVNIR_3640 PF16916 Dimerisation domain of Zinc Transporter TVNIR_3640 PF01545 Cation efflux family TVNIR_3642 PF02091 Glycyl-tRNA synthetase alpha subunit TVNIR_3643 PF05746 DALR anticodon binding domain TVNIR_3643 PF02092 Glycyl-tRNA synthetase beta subunit TVNIR_3645 PF00899 ThiF family TVNIR_3646 PF01026 TatD related DNase TVNIR_3649 PF00248 Aldo/keto reductase family TVNIR_3652 PF00485 Phosphoribulokinase / Uridine kinase family TVNIR_3653 PF03600 Citrate transporter TVNIR_3653 PF02080 TrkA-C domain TVNIR_3655 PF00582 Universal stress protein family TVNIR_3656 PF02390 Putative methyltransferase TVNIR_3657 PF05690 Thiazole biosynthesis protein ThiG TVNIR_3664 PF00326 Prolyl oligopeptidase family TVNIR_3670 PF02678 Pirin TVNIR_3670 PF05726 Pirin C-terminal cupin domain TVNIR_3673 PF13649 Methyltransferase domain TVNIR_3677 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TVNIR_3685 PF00141 Peroxidase TVNIR_3694 PF00990 Diguanylate cyclase, GGDEF domain TVNIR_3694 PF13426 PAS domain TVNIR_3694 PF00563 EAL domain TVNIR_3698 PF00625 Guanylate kinase TVNIR_3699 PF01192 RNA polymerase Rpb6 TVNIR_3700 PF02824 TGS domain TVNIR_3700 PF04607 Region found in RelA / SpoT proteins TVNIR_3700 PF13291 ACT domain TVNIR_3701 PF01042 Endoribonuclease L-PSP TVNIR_3702 PF00270 DEAD/DEAH box helicase TVNIR_3702 PF00271 Helicase conserved C-terminal domain TVNIR_3702 PF17191 RecG wedge domain TVNIR_3704 PF01171 PP-loop family TVNIR_3705 PF01134 Glucose inhibited division protein A TVNIR_3705 PF13932 GidA associated domain TVNIR_3706 PF02527 rRNA small subunit methyltransferase G TVNIR_3707 PF13614 AAA domain TVNIR_3708 PF02195 ParB-like nuclease domain TVNIR_3708 PF17762 HTH domain found in ParB protein TVNIR_3710 PF00119 ATP synthase A chain TVNIR_3711 PF00137 ATP synthase subunit C TVNIR_3712 PF00430 ATP synthase B/B' CF(0) TVNIR_3713 PF00213 ATP synthase delta (OSCP) subunit TVNIR_3714 PF00306 ATP synthase alpha/beta chain, C terminal domain TVNIR_3714 PF02874 ATP synthase alpha/beta family, beta-barrel domain TVNIR_3714 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVNIR_3715 PF00231 ATP synthase TVNIR_3716 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVNIR_3716 PF02874 ATP synthase alpha/beta family, beta-barrel domain TVNIR_3717 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TVNIR_3717 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TVNIR_3718 PF14602 Hexapeptide repeat of succinyl-transferase TVNIR_3718 PF12804 MobA-like NTP transferase domain TVNIR_3718 PF00132 Bacterial transferase hexapeptide (six repeats) TVNIR_3719 PF01380 SIS domain TVNIR_3721 PF01949 Protein of unknown function DUF99 TVNIR_3722 PF17820 PDZ domain TVNIR_3722 PF13180 PDZ domain TVNIR_3724 PF05166 YcgL domain TVNIR_3724 PF05116 Sucrose-6F-phosphate phosphohydrolase TVNIR_3725 PF01965 DJ-1/PfpI family TVNIR_3726 PF03572 Peptidase family S41 TVNIR_3726 PF13180 PDZ domain TVNIR_3727 PF01551 Peptidase family M23 TVNIR_3729 PF00581 Rhodanese-like domain TVNIR_3730 PF00462 Glutaredoxin TVNIR_3731 PF00085 Thioredoxin TVNIR_3732 PF02556 Preprotein translocase subunit SecB TVNIR_3733 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TVNIR_3733 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TVNIR_3734 PF00588 SpoU rRNA Methylase family TVNIR_3735 PF00072 Response regulator receiver domain TVNIR_3735 PF00158 Sigma-54 interaction domain TVNIR_3735 PF02954 Bacterial regulatory protein, Fis family TVNIR_3736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_3736 PF00512 His Kinase A (phospho-acceptor) domain TVNIR_3736 PF00989 PAS fold TVNIR_3739 PF03641 Possible lysine decarboxylase TVNIR_3740 PF00476 DNA polymerase family A TVNIR_3740 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TVNIR_3740 PF01367 5'-3' exonuclease, C-terminal SAM fold TVNIR_3740 PF01612 3'-5' exonuclease TVNIR_3742 PF02630 SCO1/SenC TVNIR_3744 PF01926 50S ribosome-binding GTPase TVNIR_3745 PF00034 Cytochrome c TVNIR_3746 PF01323 DSBA-like thioredoxin domain TVNIR_3748 PF00294 pfkB family carbohydrate kinase TVNIR_3749 PF00733 Asparagine synthase TVNIR_3749 PF13537 Glutamine amidotransferase domain TVNIR_3750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVNIR_3750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVNIR_3751 PF00857 Isochorismatase family TVNIR_3753 PF07687 Peptidase dimerisation domain TVNIR_3753 PF01546 Peptidase family M20/M25/M40 TVNIR_3754 PF01047 MarR family TVNIR_3756 PF02028 BCCT, betaine/carnitine/choline family transporter TVNIR_3758 PF07690 Major Facilitator Superfamily TVNIR_3759 PF03372 Endonuclease/Exonuclease/phosphatase family TVNIR_3760 PF00156 Phosphoribosyl transferase domain TVNIR_3762 PF13667 ThiC-associated domain TVNIR_3762 PF01964 Radical SAM ThiC family TVNIR_3766 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TVNIR_3766 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TVNIR_3767 PF00271 Helicase conserved C-terminal domain TVNIR_3767 PF00270 DEAD/DEAH box helicase TVNIR_3767 PF03880 DbpA RNA binding domain TVNIR_3769 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TVNIR_3771 PF00365 Phosphofructokinase TVNIR_3774 PF01467 Cytidylyltransferase-like TVNIR_3775 PF00037 4Fe-4S binding domain TVNIR_3778 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TVNIR_3778 PF00391 PEP-utilising enzyme, mobile domain TVNIR_3783 PF00364 Biotin-requiring enzyme TVNIR_3783 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TVNIR_3783 PF02817 e3 binding domain TVNIR_3784 PF16870 2-oxoglutarate dehydrogenase C-terminal TVNIR_3784 PF16078 2-oxoglutarate dehydrogenase N-terminus TVNIR_3784 PF02779 Transketolase, pyrimidine binding domain TVNIR_3784 PF00676 Dehydrogenase E1 component TVNIR_3785 PF00580 UvrD/REP helicase N-terminal domain TVNIR_3785 PF13361 UvrD-like helicase C-terminal domain TVNIR_3790 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TVNIR_3790 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVNIR_3790 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVNIR_3791 PF00034 Cytochrome c TVNIR_3795 PF00561 alpha/beta hydrolase fold TVNIR_3796 PF02580 D-Tyr-tRNA(Tyr) deacylase TVNIR_3797 PF01813 ATP synthase subunit D TVNIR_3798 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVNIR_3799 PF02874 ATP synthase alpha/beta family, beta-barrel domain TVNIR_3799 PF16886 ATPsynthase alpha/beta subunit N-term extension TVNIR_3799 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVNIR_3800 PF01991 ATP synthase (E/31 kDa) subunit TVNIR_3806 PF01926 50S ribosome-binding GTPase TVNIR_3806 PF10396 GTP-binding protein TrmE N-terminus TVNIR_3806 PF12631 MnmE helical domain TVNIR_3807 PF14849 YidC periplasmic domain TVNIR_3807 PF02096 60Kd inner membrane protein TVNIR_3808 PF01809 Putative membrane protein insertion efficiency factor TVNIR_3809 PF00825 Ribonuclease P TVNIR_3810 PF00468 Ribosomal protein L34 TVNIR_3811 PF11638 DnaA N-terminal domain TVNIR_3811 PF00308 Bacterial dnaA protein TVNIR_3811 PF08299 Bacterial dnaA protein helix-turn-helix TVNIR_3812 PF02767 DNA polymerase III beta subunit, central domain TVNIR_3812 PF00712 DNA polymerase III beta subunit, N-terminal domain TVNIR_3812 PF02768 DNA polymerase III beta subunit, C-terminal domain TVNIR_3813 PF02463 RecF/RecN/SMC N terminal domain TVNIR_3816 PF01751 Toprim domain TVNIR_3816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVNIR_3816 PF18053 DNA gyrase B subunit insert domain TVNIR_3816 PF00986 DNA gyrase B subunit, carboxyl terminus TVNIR_3816 PF00204 DNA gyrase B TVNIR_3817 PF04011 LemA family TVNIR_3819 PF01432 Peptidase family M3 TVNIR_3820 PF03372 Endonuclease/Exonuclease/phosphatase family TVNIR_3823 PF03350 Uncharacterized protein family, UPF0114 TVNIR_3824 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TVNIR_3827 PF00175 Oxidoreductase NAD-binding domain TVNIR_3827 PF00111 2Fe-2S iron-sulfur cluster binding domain TVNIR_3827 PF00970 Oxidoreductase FAD-binding domain TVNIR_3829 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TVNIR_3829 PF03900 Porphobilinogen deaminase, C-terminal domain TVNIR_3830 PF00206 Lyase TVNIR_3830 PF14698 Argininosuccinate lyase C-terminal TVNIR_3836 PF03934 Type II secretion system (T2SS), protein K TVNIR_3837 PF07963 Prokaryotic N-terminal methylation motif TVNIR_3837 PF11612 Type II secretion system (T2SS), protein J TVNIR_3838 PF02501 Type II secretion system (T2SS), protein I TVNIR_3838 PF07963 Prokaryotic N-terminal methylation motif TVNIR_3839 PF07963 Prokaryotic N-terminal methylation motif TVNIR_3839 PF12019 Type II transport protein GspH TVNIR_3840 PF08334 Type II secretion system (T2SS), protein G TVNIR_3840 PF07963 Prokaryotic N-terminal methylation motif TVNIR_3841 PF00482 Type II secretion system (T2SS), protein F TVNIR_3843 PF00437 Type II/IV secretion system protein TVNIR_3844 PF00263 Bacterial type II and III secretion system protein TVNIR_3844 PF03958 Bacterial type II/III secretion system short domain TVNIR_3845 PF11356 Type II secretion system protein C TVNIR_3846 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TVNIR_3846 PF01676 Metalloenzyme superfamily TVNIR_3847 PF00196 Bacterial regulatory proteins, luxR family TVNIR_3847 PF00072 Response regulator receiver domain TVNIR_3849 PF01370 NAD dependent epimerase/dehydratase family TVNIR_3850 PF16363 GDP-mannose 4,6 dehydratase TVNIR_3857 PF01850 PIN domain