locus-tag class description THITH_00005 PF00308 Bacterial dnaA protein THITH_00005 PF08299 Bacterial dnaA protein helix-turn-helix THITH_00005 PF11638 DnaA N-terminal domain THITH_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain THITH_00010 PF02767 DNA polymerase III beta subunit, central domain THITH_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain THITH_00015 PF02463 RecF/RecN/SMC N terminal domain THITH_00020 PF00204 DNA gyrase B THITH_00020 PF00986 DNA gyrase B subunit, carboxyl terminus THITH_00020 PF18053 DNA gyrase B subunit insert domain THITH_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_00020 PF01751 Toprim domain THITH_00025 PF04011 LemA family THITH_00035 PF01432 Peptidase family M3 THITH_00040 PF03372 Endonuclease/Exonuclease/phosphatase family THITH_00045 PF03350 Uncharacterized protein family, UPF0114 THITH_00050 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase THITH_00060 PF00111 2Fe-2S iron-sulfur cluster binding domain THITH_00060 PF00970 Oxidoreductase FAD-binding domain THITH_00060 PF00175 Oxidoreductase NAD-binding domain THITH_00065 PF02602 Uroporphyrinogen-III synthase HemD THITH_00070 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THITH_00070 PF03900 Porphobilinogen deaminase, C-terminal domain THITH_00075 PF00206 Lyase THITH_00075 PF14698 Argininosuccinate lyase C-terminal THITH_00110 PF11612 Type II secretion system (T2SS), protein J THITH_00110 PF07963 Prokaryotic N-terminal methylation motif THITH_00115 PF07963 Prokaryotic N-terminal methylation motif THITH_00115 PF02501 Type II secretion system (T2SS), protein I THITH_00120 PF12019 Type II transport protein GspH THITH_00120 PF07963 Prokaryotic N-terminal methylation motif THITH_00125 PF08334 Type II secretion system (T2SS), protein G THITH_00125 PF07963 Prokaryotic N-terminal methylation motif THITH_00130 PF00482 Type II secretion system (T2SS), protein F THITH_00135 PF00437 Type II/IV secretion system protein THITH_00140 PF03958 Bacterial type II/III secretion system short domain THITH_00140 PF00263 Bacterial type II and III secretion system protein THITH_00145 PF11356 Type II secretion system protein C THITH_00150 PF06415 BPG-independent PGAM N-terminus (iPGM_N) THITH_00150 PF01676 Metalloenzyme superfamily THITH_00155 PF00196 Bacterial regulatory proteins, luxR family THITH_00155 PF00072 Response regulator receiver domain THITH_00170 PF01370 NAD dependent epimerase/dehydratase family THITH_00175 PF16363 GDP-mannose 4,6 dehydratase THITH_00180 PF05685 Putative restriction endonuclease THITH_00210 PF00005 ABC transporter THITH_00210 PF00664 ABC transporter transmembrane region THITH_00230 PF00005 ABC transporter THITH_00230 PF00664 ABC transporter transmembrane region THITH_00250 PF01467 Cytidylyltransferase-like THITH_00255 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase THITH_00280 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system THITH_00355 PF13439 Glycosyltransferase Family 4 THITH_00360 PF00535 Glycosyl transferase family 2 THITH_00375 PF00114 Pilin (bacterial filament) THITH_00375 PF07963 Prokaryotic N-terminal methylation motif THITH_00385 PF05685 Putative restriction endonuclease THITH_00400 PF13244 Domain of unknown function (DUF4040) THITH_00400 PF00361 Proton-conducting membrane transporter THITH_00400 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THITH_00405 PF01370 NAD dependent epimerase/dehydratase family THITH_00415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THITH_00415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THITH_00415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THITH_00420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THITH_00420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THITH_00420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THITH_00420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THITH_00425 PF01050 Mannose-6-phosphate isomerase THITH_00425 PF00483 Nucleotidyl transferase THITH_00440 PF00902 Sec-independent protein translocase protein (TatC) THITH_00445 PF02416 mttA/Hcf106 family THITH_00450 PF02416 mttA/Hcf106 family THITH_00455 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THITH_00460 PF00977 Histidine biosynthesis protein THITH_00465 PF00977 Histidine biosynthesis protein THITH_00470 PF00117 Glutamine amidotransferase class-I THITH_00475 PF00475 Imidazoleglycerol-phosphate dehydratase THITH_00500 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THITH_00500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THITH_00510 PF01678 Diaminopimelate epimerase THITH_00515 PF04340 Protein of unknown function, DUF484 THITH_00520 PF00589 Phage integrase family THITH_00520 PF02899 Phage integrase, N-terminal SAM-like domain THITH_00525 PF00227 Proteasome subunit THITH_00530 PF10431 C-terminal, D2-small domain, of ClpB protein THITH_00530 PF00004 ATPase family associated with various cellular activities (AAA) THITH_00530 PF07724 AAA domain (Cdc48 subfamily) THITH_00540 PF01209 ubiE/COQ5 methyltransferase family THITH_00550 PF03109 ABC1 family THITH_00555 PF03976 Polyphosphate kinase 2 (PPK2) THITH_00560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THITH_00560 PF00361 Proton-conducting membrane transporter THITH_00560 PF13244 Domain of unknown function (DUF4040) THITH_00565 PF00361 Proton-conducting membrane transporter THITH_00570 PF00361 Proton-conducting membrane transporter THITH_00575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THITH_00590 PF03334 Na+/H+ antiporter subunit THITH_00610 PF06827 Zinc finger found in FPG and IleRS THITH_00610 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain THITH_00610 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain THITH_00620 PF00471 Ribosomal protein L33 THITH_00625 PF00830 Ribosomal L28 family THITH_00630 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain THITH_00630 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain THITH_00645 PF00664 ABC transporter transmembrane region THITH_00645 PF00005 ABC transporter THITH_00645 PF03412 Peptidase C39 family THITH_00650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THITH_00650 PF00529 HlyD membrane-fusion protein of T1SS THITH_00655 PF00196 Bacterial regulatory proteins, luxR family THITH_00655 PF00072 Response regulator receiver domain THITH_00705 PF05230 MASE2 domain THITH_00705 PF00990 Diguanylate cyclase, GGDEF domain THITH_00710 PF01322 Cytochrome C' THITH_00715 PF00034 Cytochrome c THITH_00725 PF00082 Subtilase family THITH_00725 PF04151 Bacterial pre-peptidase C-terminal domain THITH_00735 PF17946 RecC C-terminal domain THITH_00740 PF13361 UvrD-like helicase C-terminal domain THITH_00740 PF12705 PD-(D/E)XK nuclease superfamily THITH_00740 PF00580 UvrD/REP helicase N-terminal domain THITH_00745 PF13538 UvrD-like helicase C-terminal domain THITH_00755 PF13847 Methyltransferase domain THITH_00770 PF02754 Cysteine-rich domain THITH_00775 PF11870 Domain of unknown function (DUF3390) THITH_00775 PF13183 4Fe-4S dicluster domain THITH_00775 PF02589 LUD domain THITH_00780 PF02589 LUD domain THITH_00785 PF02652 L-lactate permease THITH_00790 PF13847 Methyltransferase domain THITH_00800 PF04542 Sigma-70 region 2 THITH_00800 PF08281 Sigma-70, region 4 THITH_00820 PF00270 DEAD/DEAH box helicase THITH_00820 PF00271 Helicase conserved C-terminal domain THITH_00820 PF09369 Domain of unknown function (DUF1998) THITH_00845 PF00891 O-methyltransferase domain THITH_00850 PF00067 Cytochrome P450 THITH_00910 PF00348 Polyprenyl synthetase THITH_00915 PF00829 Ribosomal prokaryotic L21 protein THITH_00920 PF01016 Ribosomal L27 protein THITH_00925 PF01018 GTP1/OBG THITH_00925 PF01926 50S ribosome-binding GTPase THITH_00930 PF00696 Amino acid kinase family THITH_00930 PF01472 PUA domain THITH_00935 PF01649 Ribosomal protein S20 THITH_00945 PF03023 Lipid II flippase MurJ THITH_00950 PF01687 Riboflavin kinase THITH_00950 PF06574 FAD synthetase THITH_00955 PF00133 tRNA synthetases class I (I, L, M and V) THITH_00955 PF08264 Anticodon-binding domain of tRNA THITH_00955 PF06827 Zinc finger found in FPG and IleRS THITH_00960 PF01252 Signal peptidase (SPase) II THITH_00965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_00970 PF02401 LytB protein THITH_00975 PF07683 Cobalamin synthesis protein cobW C-terminal domain THITH_00975 PF02492 CobW/HypB/UreG, nucleotide-binding domain THITH_00990 PF00072 Response regulator receiver domain THITH_00995 PF00512 His Kinase A (phospho-acceptor) domain THITH_00995 PF00072 Response regulator receiver domain THITH_00995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_00995 PF09308 LuxQ, periplasmic THITH_01000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THITH_01005 PF00528 Binding-protein-dependent transport system inner membrane component THITH_01010 PF12911 N-terminal TM domain of oligopeptide transport permease C THITH_01010 PF00528 Binding-protein-dependent transport system inner membrane component THITH_01015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THITH_01015 PF00005 ABC transporter THITH_01035 PF02872 5'-nucleotidase, C-terminal domain THITH_01035 PF00149 Calcineurin-like phosphoesterase THITH_01045 PF04221 RelB antitoxin THITH_01050 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ THITH_01060 PF01381 Helix-turn-helix THITH_01100 PF00176 SNF2 family N-terminal domain THITH_01100 PF12137 RNA polymerase recycling family C-terminal THITH_01100 PF18339 RapA N-terminal Tudor like domain 1 THITH_01100 PF00271 Helicase conserved C-terminal domain THITH_01100 PF18337 RapA N-terminal Tudor like domain THITH_01135 PF07704 Rv0623-like transcription factor THITH_01140 PF01850 PIN domain THITH_01145 PF13784 Fic/DOC family N-terminal THITH_01145 PF02661 Fic/DOC family THITH_01155 PF00271 Helicase conserved C-terminal domain THITH_01155 PF00270 DEAD/DEAH box helicase THITH_01155 PF09369 Domain of unknown function (DUF1998) THITH_01160 PF13361 UvrD-like helicase C-terminal domain THITH_01160 PF00580 UvrD/REP helicase N-terminal domain THITH_01170 PF01475 Ferric uptake regulator family THITH_01185 PF05690 Thiazole biosynthesis protein ThiG THITH_01190 PF02390 Putative methyltransferase THITH_01195 PF00582 Universal stress protein family THITH_01200 PF03600 Citrate transporter THITH_01200 PF02080 TrkA-C domain THITH_01205 PF00485 Phosphoribulokinase / Uridine kinase family THITH_01220 PF00248 Aldo/keto reductase family THITH_01235 PF01026 TatD related DNase THITH_01240 PF00899 ThiF family THITH_01250 PF02092 Glycyl-tRNA synthetase beta subunit THITH_01250 PF05746 DALR anticodon binding domain THITH_01255 PF02091 Glycyl-tRNA synthetase alpha subunit THITH_01265 PF01545 Cation efflux family THITH_01265 PF16916 Dimerisation domain of Zinc Transporter THITH_01270 PF00120 Glutamine synthetase, catalytic domain THITH_01270 PF03951 Glutamine synthetase, beta-Grasp domain THITH_01275 PF00313 'Cold-shock' DNA-binding domain THITH_01280 PF13718 GNAT acetyltransferase 2 THITH_01280 PF05127 Helicase THITH_01295 PF04204 Homoserine O-succinyltransferase THITH_01310 PF02321 Outer membrane efflux protein THITH_01320 PF16925 Tetracyclin repressor-like, C-terminal domain THITH_01320 PF00440 Bacterial regulatory proteins, tetR family THITH_01325 PF12627 Probable RNA and SrmB- binding site of polymerase A THITH_01325 PF01966 HD domain THITH_01325 PF01743 Poly A polymerase head domain THITH_01330 PF01370 NAD dependent epimerase/dehydratase family THITH_01335 PF00171 Aldehyde dehydrogenase family THITH_01340 PF06463 Molybdenum Cofactor Synthesis C THITH_01340 PF04055 Radical SAM superfamily THITH_01345 PF00365 Phosphofructokinase THITH_01350 PF05191 Adenylate kinase, active site lid THITH_01370 PF04976 DMSO reductase anchor subunit (DmsC) THITH_01375 PF12800 4Fe-4S binding domain THITH_01375 PF13247 4Fe-4S dicluster domain THITH_01380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_01380 PF01568 Molydopterin dinucleotide binding domain THITH_01380 PF00384 Molybdopterin oxidoreductase THITH_01400 PF01747 ATP-sulfurylase THITH_01400 PF14306 PUA-like domain THITH_01410 PF13187 4Fe-4S dicluster domain THITH_01410 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit THITH_01415 PF00890 FAD binding domain THITH_01425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_01430 PF00271 Helicase conserved C-terminal domain THITH_01430 PF00270 DEAD/DEAH box helicase THITH_01435 PF00085 Thioredoxin THITH_01440 PF07498 Rho termination factor, N-terminal domain THITH_01440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THITH_01440 PF07497 Rho termination factor, RNA-binding domain THITH_01455 PF06969 HemN C-terminal domain THITH_01455 PF04055 Radical SAM superfamily THITH_01460 PF01725 Ham1 family THITH_01465 PF01138 3' exoribonuclease family, domain 1 THITH_01465 PF03725 3' exoribonuclease family, domain 2 THITH_01470 PF08340 Domain of unknown function (DUF1732) THITH_01470 PF03755 YicC-like family, N-terminal region THITH_01475 PF00011 Hsp20/alpha crystallin family THITH_01480 PF00226 DnaJ domain THITH_01480 PF01556 DnaJ C terminal domain THITH_01485 PF13180 PDZ domain THITH_01485 PF00595 PDZ domain THITH_01490 PF02391 MoaE protein THITH_01495 PF02597 ThiS family THITH_01500 PF01967 MoaC family THITH_01515 PF10576 Iron-sulfur binding domain of endonuclease III THITH_01515 PF14815 NUDIX domain THITH_01515 PF00633 Helix-hairpin-helix motif THITH_01515 PF00730 HhH-GPD superfamily base excision DNA repair protein THITH_01520 PF04362 Bacterial Fe(2+) trafficking THITH_01530 PF14659 Phage integrase, N-terminal SAM-like domain THITH_01530 PF00589 Phage integrase family THITH_01530 PF13356 Arm DNA-binding domain THITH_01535 PF05970 PIF1-like helicase THITH_01625 PF02599 Global regulator protein family THITH_01675 PF07969 Amidohydrolase family THITH_01680 PF02492 CobW/HypB/UreG, nucleotide-binding domain THITH_01680 PF07683 Cobalamin synthesis protein cobW C-terminal domain THITH_01700 PF00873 AcrB/AcrD/AcrF family THITH_01715 PF13654 AAA domain THITH_01715 PF05362 Lon protease (S16) C-terminal proteolytic domain THITH_01725 PF13230 Glutamine amidotransferases class-II THITH_01730 PF00596 Class II Aldolase and Adducin N-terminal domain THITH_01735 PF00990 Diguanylate cyclase, GGDEF domain THITH_01735 PF08448 PAS fold THITH_01735 PF00563 EAL domain THITH_01755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THITH_01755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THITH_01755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THITH_01755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THITH_01770 PF08343 Ribonucleotide reductase N-terminal THITH_01770 PF00317 Ribonucleotide reductase, all-alpha domain THITH_01770 PF14528 LAGLIDADG-like domain THITH_01770 PF02867 Ribonucleotide reductase, barrel domain THITH_01785 PF07715 TonB-dependent Receptor Plug Domain THITH_01785 PF00593 TonB dependent receptor THITH_01795 PF01475 Ferric uptake regulator family THITH_01805 PF01464 Transglycosylase SLT domain THITH_01805 PF00497 Bacterial extracellular solute-binding proteins, family 3 THITH_01810 PF02896 PEP-utilising enzyme, TIM barrel domain THITH_01810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THITH_01810 PF00391 PEP-utilising enzyme, mobile domain THITH_01815 PF03618 Kinase/pyrophosphorylase THITH_01820 PF02492 CobW/HypB/UreG, nucleotide-binding domain THITH_01820 PF07683 Cobalamin synthesis protein cobW C-terminal domain THITH_01840 PF00005 ABC transporter THITH_01850 PF00183 Hsp90 protein THITH_01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_01885 PF11867 Domain of unknown function (DUF3387) THITH_01885 PF18766 SWI2/SNF2 ATPase THITH_01885 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) THITH_01910 PF02384 N-6 DNA Methylase THITH_01910 PF12161 HsdM N-terminal domain THITH_01920 PF07670 Nucleoside recognition THITH_01920 PF07664 Ferrous iron transport protein B C terminus THITH_01920 PF02421 Ferrous iron transport protein B THITH_01930 PF01381 Helix-turn-helix THITH_01970 PF00270 DEAD/DEAH box helicase THITH_01970 PF04408 Helicase associated domain (HA2) THITH_01970 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold THITH_01970 PF11898 Domain of unknown function (DUF3418) THITH_01970 PF00271 Helicase conserved C-terminal domain THITH_01980 PF05746 DALR anticodon binding domain THITH_01980 PF00750 tRNA synthetases class I (R) THITH_01980 PF03485 Arginyl tRNA synthetase N terminal domain THITH_01985 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THITH_01985 PF18074 Primosomal protein N C-terminal domain THITH_01985 PF17764 3′ DNA-binding domain (3′BD) THITH_01985 PF00271 Helicase conserved C-terminal domain THITH_01985 PF00270 DEAD/DEAH box helicase THITH_01990 PF02233 NAD(P) transhydrogenase beta subunit THITH_01995 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch THITH_02000 PF05222 Alanine dehydrogenase/PNT, N-terminal domain THITH_02000 PF01262 Alanine dehydrogenase/PNT, C-terminal domain THITH_02010 PF00762 Ferrochelatase THITH_02015 PF02464 Competence-damaged protein THITH_02015 PF00994 Probable molybdopterin binding domain THITH_02015 PF18146 Damage-inducible protein CinA KH domain THITH_02035 PF00535 Glycosyl transferase family 2 THITH_02040 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase THITH_02055 PF00528 Binding-protein-dependent transport system inner membrane component THITH_02060 PF00005 ABC transporter THITH_02065 PF12849 PBP superfamily domain THITH_02070 PF04055 Radical SAM superfamily THITH_02070 PF06463 Molybdenum Cofactor Synthesis C THITH_02075 PF02954 Bacterial regulatory protein, Fis family THITH_02075 PF00158 Sigma-54 interaction domain THITH_02075 PF00072 Response regulator receiver domain THITH_02080 PF12804 MobA-like NTP transferase domain THITH_02085 PF00994 Probable molybdopterin binding domain THITH_02085 PF03454 MoeA C-terminal region (domain IV) THITH_02085 PF03453 MoeA N-terminal region (domain I and II) THITH_02095 PF01292 Prokaryotic cytochrome b561 THITH_02105 PF13247 4Fe-4S dicluster domain THITH_02110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_02110 PF12838 4Fe-4S dicluster domain THITH_02110 PF00384 Molybdopterin oxidoreductase THITH_02110 PF01568 Molydopterin dinucleotide binding domain THITH_02110 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THITH_02140 PF02634 FdhD/NarQ family THITH_02150 PF07995 Glucose / Sorbosone dehydrogenase THITH_02180 PF04221 RelB antitoxin THITH_02185 PF07883 Cupin domain THITH_02185 PF01381 Helix-turn-helix THITH_02210 PF01850 PIN domain THITH_02285 PF00072 Response regulator receiver domain THITH_02285 PF04397 LytTr DNA-binding domain THITH_02290 PF06580 Histidine kinase THITH_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_02300 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system THITH_02305 PF03781 Sulfatase-modifying factor enzyme 1 THITH_02310 PF00578 AhpC/TSA family THITH_02315 PF02445 Quinolinate synthetase A protein THITH_02325 PF13614 AAA domain THITH_02340 PF00970 Oxidoreductase FAD-binding domain THITH_02340 PF00175 Oxidoreductase NAD-binding domain THITH_02355 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THITH_02355 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_02355 PF10518 TAT (twin-arginine translocation) pathway signal sequence THITH_02375 PF00072 Response regulator receiver domain THITH_02375 PF00486 Transcriptional regulatory protein, C terminal THITH_02380 PF00989 PAS fold THITH_02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_02380 PF00672 HAMP domain THITH_02380 PF00512 His Kinase A (phospho-acceptor) domain THITH_02385 PF01266 FAD dependent oxidoreductase THITH_02405 PF18030 RimK PreATP-grasp domain THITH_02405 PF08443 RimK-like ATP-grasp domain THITH_02410 PF03279 Bacterial lipid A biosynthesis acyltransferase THITH_02415 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THITH_02425 PF13580 SIS domain THITH_02430 PF01467 Cytidylyltransferase-like THITH_02430 PF00294 pfkB family carbohydrate kinase THITH_02435 PF01370 NAD dependent epimerase/dehydratase family THITH_02445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THITH_02450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THITH_02465 PF01612 3'-5' exonuclease THITH_02465 PF00570 HRDC domain THITH_02470 PF04093 rod shape-determining protein MreD THITH_02475 PF04085 rod shape-determining protein MreC THITH_02485 PF02686 Glu-tRNAGln amidotransferase C subunit THITH_02490 PF01425 Amidase THITH_02495 PF02934 GatB/GatE catalytic domain THITH_02495 PF02637 GatB domain THITH_02500 PF01430 Hsp33 protein THITH_02505 PF01925 Sulfite exporter TauE/SafE THITH_02510 PF00202 Aminotransferase class-III THITH_02515 PF02581 Thiamine monophosphate synthase THITH_02520 PF02581 Thiamine monophosphate synthase THITH_02520 PF08543 Phosphomethylpyrimidine kinase THITH_02530 PF00293 NUDIX domain THITH_02535 PF00391 PEP-utilising enzyme, mobile domain THITH_02535 PF02896 PEP-utilising enzyme, TIM barrel domain THITH_02535 PF01590 GAF domain THITH_02535 PF05524 PEP-utilising enzyme, N-terminal THITH_02540 PF02774 Semialdehyde dehydrogenase, dimerisation domain THITH_02540 PF01118 Semialdehyde dehydrogenase, NAD binding domain THITH_02545 PF01521 Iron-sulphur cluster biosynthesis THITH_02550 PF03702 Anhydro-N-acetylmuramic acid kinase THITH_02555 PF01551 Peptidase family M23 THITH_02555 PF04225 Opacity-associated protein A LysM-like domain THITH_02560 PF01479 S4 domain THITH_02560 PF00579 tRNA synthetases class I (W and Y) THITH_02590 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain THITH_02590 PF00753 Metallo-beta-lactamase superfamily THITH_02590 PF10996 Beta-Casp domain THITH_02595 PF06804 NlpB/DapX lipoprotein THITH_02600 PF00701 Dihydrodipicolinate synthetase family THITH_02610 PF00578 AhpC/TSA family THITH_02615 PF02562 PhoH-like protein THITH_02615 PF13638 PIN domain THITH_02620 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THITH_02620 PF02779 Transketolase, pyrimidine binding domain THITH_02620 PF02780 Transketolase, C-terminal domain THITH_02625 PF00348 Polyprenyl synthetase THITH_02630 PF02609 Exonuclease VII small subunit THITH_02635 PF02915 Rubrerythrin THITH_02655 PF18073 Rubredoxin metal binding domain THITH_02660 PF00571 CBS domain THITH_02660 PF01595 Cyclin M transmembrane N-terminal domain THITH_02660 PF03471 Transporter associated domain THITH_02665 PF01578 Cytochrome C assembly protein THITH_02670 PF02978 Signal peptide binding domain THITH_02670 PF02881 SRP54-type protein, helical bundle domain THITH_02670 PF00448 SRP54-type protein, GTPase domain THITH_02675 PF00886 Ribosomal protein S16 THITH_02680 PF01782 RimM N-terminal domain THITH_02680 PF05239 PRC-barrel domain THITH_02685 PF01746 tRNA (Guanine-1)-methyltransferase THITH_02690 PF01245 Ribosomal protein L19 THITH_02710 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ THITH_02715 PF00183 Hsp90 protein THITH_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_02725 PF08496 Peptidase family S49 N-terminal THITH_02725 PF01343 Peptidase family S49 THITH_02730 PF03466 LysR substrate binding domain THITH_02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_02745 PF01594 AI-2E family transporter THITH_02750 PF00575 S1 RNA binding domain THITH_02750 PF10150 Ribonuclease E/G family THITH_02760 PF00795 Carbon-nitrogen hydrolase THITH_02765 PF01523 Putative modulator of DNA gyrase THITH_02770 PF01523 Putative modulator of DNA gyrase THITH_02780 PF00551 Formyl transferase THITH_02785 PF00586 AIR synthase related protein, N-terminal domain THITH_02785 PF02769 AIR synthase related protein, C-terminal domain THITH_02790 PF01066 CDP-alcohol phosphatidyltransferase THITH_02795 PF00308 Bacterial dnaA protein THITH_02805 PF03358 NADPH-dependent FMN reductase THITH_02810 PF03960 ArsC family THITH_02815 PF00708 Acylphosphatase THITH_02820 PF03129 Anticodon binding domain THITH_02820 PF04073 Aminoacyl-tRNA editing domain THITH_02820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THITH_02830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THITH_02830 PF00529 HlyD membrane-fusion protein of T1SS THITH_02835 PF00873 AcrB/AcrD/AcrF family THITH_02840 PF12146 Serine aminopeptidase, S33 THITH_02845 PF13396 Phospholipase_D-nuclease N-terminal THITH_02845 PF13091 PLD-like domain THITH_02850 PF07670 Nucleoside recognition THITH_02855 PF00106 short chain dehydrogenase THITH_02875 PF01336 OB-fold nucleic acid binding domain THITH_02875 PF00152 tRNA synthetases class II (D, K and N) THITH_02875 PF02938 GAD domain THITH_02885 PF01709 Transcriptional regulator THITH_02890 PF02075 Crossover junction endodeoxyribonuclease RuvC THITH_02895 PF07499 RuvA, C-terminal domain THITH_02895 PF01330 RuvA N terminal domain THITH_02900 PF17864 RuvB AAA lid domain THITH_02900 PF05491 RuvB C-terminal winged helix domain THITH_02900 PF05496 Holliday junction DNA helicase RuvB P-loop domain THITH_02905 PF03061 Thioesterase superfamily THITH_02910 PF01618 MotA/TolQ/ExbB proton channel family THITH_02915 PF02472 Biopolymer transport protein ExbD/TolR THITH_02925 PF07676 WD40-like Beta Propeller Repeat THITH_02925 PF04052 TolB amino-terminal domain THITH_02930 PF00691 OmpA family THITH_02940 PF04055 Radical SAM superfamily THITH_02945 PF06508 Queuosine biosynthesis protein QueC THITH_02980 PF13817 IS66 C-terminal element THITH_02980 PF13007 Transposase C of IS166 homeodomain THITH_02980 PF13005 zinc-finger binding domain of transposase IS66 THITH_02980 PF03050 Transposase IS66 family THITH_02985 PF05717 IS66 Orf2 like protein THITH_02995 PF04389 Peptidase family M28 THITH_02995 PF02225 PA domain THITH_03000 PF00581 Rhodanese-like domain THITH_03005 PF01568 Molydopterin dinucleotide binding domain THITH_03005 PF00384 Molybdopterin oxidoreductase THITH_03005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_03010 PF13247 4Fe-4S dicluster domain THITH_03050 PF00005 ABC transporter THITH_03050 PF03459 TOBE domain THITH_03055 PF00528 Binding-protein-dependent transport system inner membrane component THITH_03165 PF00004 ATPase family associated with various cellular activities (AAA) THITH_03165 PF17758 Proteasomal ATPase OB N-terminal domain THITH_03165 PF16450 Proteasomal ATPase OB C-terminal domain THITH_03180 PF00478 IMP dehydrogenase / GMP reductase domain THITH_03180 PF00571 CBS domain THITH_03225 PF00107 Zinc-binding dehydrogenase THITH_03225 PF08240 Alcohol dehydrogenase GroES-like domain THITH_03255 PF00107 Zinc-binding dehydrogenase THITH_03260 PF00753 Metallo-beta-lactamase superfamily THITH_03260 PF16123 Hydroxyacylglutathione hydrolase C-terminus THITH_03285 PF01618 MotA/TolQ/ExbB proton channel family THITH_03300 PF03928 Haem-degrading THITH_03305 PF01261 Xylose isomerase-like TIM barrel THITH_03335 PF05199 GMC oxidoreductase THITH_03335 PF00732 GMC oxidoreductase THITH_03355 PF09957 Bacterial antitoxin of type II TA system, VapB THITH_03360 PF01850 PIN domain THITH_03365 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) THITH_03365 PF01348 Type II intron maturase THITH_03380 PF01934 Protein of unknown function DUF86 THITH_03430 PF04851 Type III restriction enzyme, res subunit THITH_03430 PF00271 Helicase conserved C-terminal domain THITH_03465 PF12146 Serine aminopeptidase, S33 THITH_03495 PF03949 Malic enzyme, NAD binding domain THITH_03495 PF00390 Malic enzyme, N-terminal domain THITH_03500 PF12221 Bacterial membrane protein N terminal THITH_03500 PF01145 SPFH domain / Band 7 family THITH_03505 PF01145 SPFH domain / Band 7 family THITH_03515 PF13393 Histidyl-tRNA synthetase THITH_03520 PF00709 Adenylosuccinate synthetase THITH_03530 PF00575 S1 RNA binding domain THITH_03530 PF00773 RNB domain THITH_03530 PF08206 Ribonuclease B OB domain THITH_03530 PF08461 Ribonuclease R winged-helix domain THITH_03530 PF17876 Cold shock domain THITH_03535 PF00588 SpoU rRNA Methylase family THITH_03535 PF08032 RNA 2'-O ribose methyltransferase substrate binding THITH_03540 PF01250 Ribosomal protein S6 THITH_03545 PF01084 Ribosomal protein S18 THITH_03555 PF01281 Ribosomal protein L9, N-terminal domain THITH_03555 PF03948 Ribosomal protein L9, C-terminal domain THITH_03560 PF00772 DnaB-like helicase N terminal domain THITH_03560 PF03796 DnaB-like helicase C terminal domain THITH_03565 PF01168 Alanine racemase, N-terminal domain THITH_03565 PF00842 Alanine racemase, C-terminal domain THITH_03570 PF02872 5'-nucleotidase, C-terminal domain THITH_03570 PF00149 Calcineurin-like phosphoesterase THITH_03575 PF07720 Tetratricopeptide repeat THITH_03575 PF01435 Peptidase family M48 THITH_03585 PF00581 Rhodanese-like domain THITH_03590 PF01206 Sulfurtransferase TusA THITH_03595 PF01597 Glycine cleavage H-protein THITH_03600 PF07715 TonB-dependent Receptor Plug Domain THITH_03600 PF00593 TonB dependent receptor THITH_03620 PF10437 Bacterial lipoate protein ligase C-terminus THITH_03620 PF03099 Biotin/lipoate A/B protein ligase family THITH_03625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THITH_03625 PF00205 Thiamine pyrophosphate enzyme, central domain THITH_03625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THITH_03630 PF10369 Small subunit of acetolactate synthase THITH_03635 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THITH_03635 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain THITH_03645 PF01066 CDP-alcohol phosphatidyltransferase THITH_03650 PF08502 LeuA allosteric (dimerisation) domain THITH_03650 PF00682 HMGL-like THITH_03655 PF03167 Uracil DNA glycosylase superfamily THITH_03660 PF00583 Acetyltransferase (GNAT) family THITH_03740 PF04986 Putative transposase THITH_03740 PF14319 Transposase zinc-binding domain THITH_03745 PF00589 Phage integrase family THITH_03745 PF13495 Phage integrase, N-terminal SAM-like domain THITH_03750 PF03144 Elongation factor Tu domain 2 THITH_03750 PF00009 Elongation factor Tu GTP binding domain THITH_03750 PF16658 Class II release factor RF3, C-terminal domain THITH_03765 PF01844 HNH endonuclease THITH_03770 PF00664 ABC transporter transmembrane region THITH_03770 PF00005 ABC transporter THITH_03775 PF00570 HRDC domain THITH_03775 PF16124 RecQ zinc-binding THITH_03775 PF09382 RQC domain THITH_03775 PF00271 Helicase conserved C-terminal domain THITH_03775 PF00270 DEAD/DEAH box helicase THITH_03785 PF01590 GAF domain THITH_03785 PF00990 Diguanylate cyclase, GGDEF domain THITH_03785 PF00360 Phytochrome region THITH_03785 PF00563 EAL domain THITH_03790 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family THITH_03805 PF08264 Anticodon-binding domain of tRNA THITH_03805 PF00133 tRNA synthetases class I (I, L, M and V) THITH_03805 PF10458 Valyl tRNA synthetase tRNA binding arm THITH_03810 PF04364 DNA polymerase III chi subunit, HolC THITH_03815 PF02789 Cytosol aminopeptidase family, N-terminal domain THITH_03815 PF00883 Cytosol aminopeptidase family, catalytic domain THITH_03845 PF13396 Phospholipase_D-nuclease N-terminal THITH_03845 PF13091 PLD-like domain THITH_03850 PF00521 DNA gyrase/topoisomerase IV, subunit A THITH_03850 PF03989 DNA gyrase C-terminal domain, beta-propeller THITH_03855 PF01435 Peptidase family M48 THITH_03860 PF00753 Metallo-beta-lactamase superfamily THITH_03865 PF00512 His Kinase A (phospho-acceptor) domain THITH_03865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_03870 PF00158 Sigma-54 interaction domain THITH_03870 PF00072 Response regulator receiver domain THITH_03870 PF02954 Bacterial regulatory protein, Fis family THITH_03880 PF00572 Ribosomal protein L13 THITH_03885 PF00380 Ribosomal protein S9/S16 THITH_03900 PF03707 Bacterial signalling protein N terminal repeat THITH_03900 PF00990 Diguanylate cyclase, GGDEF domain THITH_03900 PF00563 EAL domain THITH_03910 PF01053 Cys/Met metabolism PLP-dependent enzyme THITH_03915 PF04305 Protein of unknown function (DUF455) THITH_03920 PF00149 Calcineurin-like phosphoesterase THITH_03925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THITH_03930 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THITH_03930 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THITH_03955 PF02586 SOS response associated peptidase (SRAP) THITH_03960 PF13195 Protein of unknown function (DUF4011) THITH_03960 PF13087 AAA domain THITH_03960 PF13086 AAA domain THITH_03960 PF13087 AAA domain THITH_03960 PF13086 AAA domain THITH_03960 PF13195 Protein of unknown function (DUF4011) THITH_03970 PF05685 Putative restriction endonuclease THITH_03975 PF03150 Di-haem cytochrome c peroxidase THITH_03975 PF00034 Cytochrome c THITH_03980 PF08031 Berberine and berberine like THITH_03980 PF01565 FAD binding domain THITH_03985 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) THITH_03985 PF01348 Type II intron maturase THITH_04010 PF07516 SecA Wing and Scaffold domain THITH_04010 PF01043 SecA preprotein cross-linking domain THITH_04010 PF02810 SEC-C motif THITH_04010 PF07517 SecA DEAD-like domain THITH_04020 PF03150 Di-haem cytochrome c peroxidase THITH_04020 PF00034 Cytochrome c THITH_04025 PF02272 DHHA1 domain THITH_04025 PF01368 DHH family THITH_04025 PF17768 RecJ OB domain THITH_04030 PF00578 AhpC/TSA family THITH_04030 PF10417 C-terminal domain of 1-Cys peroxiredoxin THITH_04045 PF00462 Glutaredoxin THITH_04050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THITH_04050 PF14824 Sirohaem biosynthesis protein central THITH_04050 PF10414 Sirohaem synthase dimerisation region THITH_04060 PF00196 Bacterial regulatory proteins, luxR family THITH_04060 PF00072 Response regulator receiver domain THITH_04065 PF00672 HAMP domain THITH_04065 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term THITH_04065 PF07730 Histidine kinase THITH_04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_04070 PF00291 Pyridoxal-phosphate dependent enzyme THITH_04080 PF13673 Acetyltransferase (GNAT) domain THITH_04095 PF05430 S-adenosyl-L-methionine-dependent methyltransferase THITH_04095 PF01266 FAD dependent oxidoreductase THITH_04105 PF01227 GTP cyclohydrolase I THITH_04120 PF00361 Proton-conducting membrane transporter THITH_04125 PF00361 Proton-conducting membrane transporter THITH_04135 PF13244 Domain of unknown function (DUF4040) THITH_04135 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THITH_04135 PF00361 Proton-conducting membrane transporter THITH_04135 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THITH_04140 PF03334 Na+/H+ antiporter subunit THITH_04155 PF00689 Cation transporting ATPase, C-terminus THITH_04155 PF00690 Cation transporter/ATPase, N-terminus THITH_04175 PF00958 GMP synthase C terminal domain THITH_04175 PF00117 Glutamine amidotransferase class-I THITH_04215 PF00535 Glycosyl transferase family 2 THITH_04250 PF13649 Methyltransferase domain THITH_04260 PF04820 Tryptophan halogenase THITH_04270 PF13193 AMP-binding enzyme C-terminal domain THITH_04270 PF00501 AMP-binding enzyme THITH_04275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain THITH_04275 PF02770 Acyl-CoA dehydrogenase, middle domain THITH_04275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain THITH_04285 PF04345 Chorismate lyase THITH_04295 PF13193 AMP-binding enzyme C-terminal domain THITH_04295 PF00501 AMP-binding enzyme THITH_04325 PF00875 DNA photolyase THITH_04325 PF03441 FAD binding domain of DNA photolyase THITH_04330 PF13411 MerR HTH family regulatory protein THITH_04355 PF00730 HhH-GPD superfamily base excision DNA repair protein THITH_04355 PF00633 Helix-hairpin-helix motif THITH_04355 PF10576 Iron-sulfur binding domain of endonuclease III THITH_04360 PF02508 Rnf-Nqr subunit, membrane protein THITH_04365 PF04205 FMN-binding domain THITH_04370 PF03116 NQR2, RnfD, RnfE family THITH_04375 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THITH_04375 PF12838 4Fe-4S dicluster domain THITH_04375 PF13375 RnfC Barrel sandwich hybrid domain THITH_04375 PF10531 SLBB domain THITH_04380 PF04060 Putative Fe-S cluster THITH_04385 PF02508 Rnf-Nqr subunit, membrane protein THITH_04395 PF00596 Class II Aldolase and Adducin N-terminal domain THITH_04400 PF09334 tRNA synthetases class I (M) THITH_04400 PF01588 Putative tRNA binding domain THITH_04405 PF10609 NUBPL iron-transfer P-loop NTPase THITH_04410 PF00692 dUTPase THITH_04415 PF07977 FabA-like domain THITH_04435 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THITH_04455 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) THITH_04460 PF03334 Na+/H+ antiporter subunit THITH_04475 PF00005 ABC transporter THITH_04475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THITH_04480 PF00005 ABC transporter THITH_04480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THITH_04490 PF00528 Binding-protein-dependent transport system inner membrane component THITH_04500 PF00488 MutS domain V THITH_04500 PF01713 Smr domain THITH_04505 PF01235 Sodium:alanine symporter family THITH_04510 PF03819 MazG nucleotide pyrophosphohydrolase domain THITH_04515 PF00970 Oxidoreductase FAD-binding domain THITH_04515 PF00042 Globin THITH_04515 PF00175 Oxidoreductase NAD-binding domain THITH_04520 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THITH_04520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THITH_04525 PF02535 ZIP Zinc transporter THITH_04530 PF00317 Ribonucleotide reductase, all-alpha domain THITH_04530 PF02867 Ribonucleotide reductase, barrel domain THITH_04530 PF03477 ATP cone domain THITH_04535 PF00268 Ribonucleotide reductase, small chain THITH_04605 PF13007 Transposase C of IS166 homeodomain THITH_04605 PF13817 IS66 C-terminal element THITH_04605 PF03050 Transposase IS66 family THITH_04605 PF13005 zinc-finger binding domain of transposase IS66 THITH_04610 PF05717 IS66 Orf2 like protein THITH_04620 PF01381 Helix-turn-helix THITH_04700 PF01370 NAD dependent epimerase/dehydratase family THITH_04705 PF12852 Cupin THITH_04705 PF12833 Helix-turn-helix domain THITH_04715 PF01230 HIT domain THITH_04770 PF00512 His Kinase A (phospho-acceptor) domain THITH_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_04770 PF00672 HAMP domain THITH_04775 PF00486 Transcriptional regulatory protein, C terminal THITH_04775 PF00072 Response regulator receiver domain THITH_04790 PF01740 STAS domain THITH_04790 PF13426 PAS domain THITH_04805 PF01975 Survival protein SurE THITH_04815 PF09335 SNARE associated Golgi protein THITH_04820 PF01551 Peptidase family M23 THITH_04820 PF01476 LysM domain THITH_04825 PF04542 Sigma-70 region 2 THITH_04825 PF04539 Sigma-70 region 3 THITH_04825 PF04545 Sigma-70, region 4 THITH_04825 PF00140 Sigma-70 factor, region 1.2 THITH_04835 PF00155 Aminotransferase class I and II THITH_04840 PF03447 Homoserine dehydrogenase, NAD binding domain THITH_04840 PF00742 Homoserine dehydrogenase THITH_04840 PF01842 ACT domain THITH_04845 PF00291 Pyridoxal-phosphate dependent enzyme THITH_04850 PF00158 Sigma-54 interaction domain THITH_04850 PF06505 Activator of aromatic catabolism THITH_04850 PF02954 Bacterial regulatory protein, Fis family THITH_04850 PF02830 V4R domain THITH_04860 PF00873 AcrB/AcrD/AcrF family THITH_04875 PF00376 MerR family regulatory protein THITH_04875 PF13614 AAA domain THITH_04900 PF13686 DsrE/DsrF/DrsH-like family THITH_04905 PF02811 PHP domain THITH_04905 PF14579 Helix-hairpin-helix motif THITH_04905 PF01336 OB-fold nucleic acid binding domain THITH_04905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THITH_04905 PF07733 Bacterial DNA polymerase III alpha NTPase domain THITH_04910 PF03972 MmgE/PrpD family THITH_04920 PF00106 short chain dehydrogenase THITH_04925 PF01565 FAD binding domain THITH_04925 PF04030 D-arabinono-1,4-lactone oxidase THITH_04930 PF03588 Leucyl/phenylalanyl-tRNA protein transferase THITH_04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_04945 PF01580 FtsK/SpoIIIE family THITH_04945 PF09397 Ftsk gamma domain THITH_04945 PF13491 4TM region of DNA translocase FtsK/SpoIIIE THITH_04945 PF17854 FtsK alpha domain THITH_04950 PF03548 Outer membrane lipoprotein carrier protein LolA THITH_04955 PF16193 AAA C-terminal domain THITH_04955 PF00004 ATPase family associated with various cellular activities (AAA) THITH_04955 PF12002 MgsA AAA+ ATPase C terminal THITH_04960 PF09335 SNARE associated Golgi protein THITH_04965 PF00768 D-alanyl-D-alanine carboxypeptidase THITH_04975 PF00873 AcrB/AcrD/AcrF family THITH_04980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THITH_04985 PF01934 Protein of unknown function DUF86 THITH_04995 PF03073 TspO/MBR family THITH_05010 PF00082 Subtilase family THITH_05015 PF13607 Succinyl-CoA ligase like flavodoxin domain THITH_05015 PF13380 CoA binding domain THITH_05015 PF00583 Acetyltransferase (GNAT) family THITH_05020 PF00850 Histone deacetylase domain THITH_05035 PF08241 Methyltransferase domain THITH_05035 PF12697 Alpha/beta hydrolase family THITH_05050 PF02954 Bacterial regulatory protein, Fis family THITH_05050 PF00072 Response regulator receiver domain THITH_05050 PF00158 Sigma-54 interaction domain THITH_05055 PF00111 2Fe-2S iron-sulfur cluster binding domain THITH_05055 PF00970 Oxidoreductase FAD-binding domain THITH_05055 PF00175 Oxidoreductase NAD-binding domain THITH_05060 PF00535 Glycosyl transferase family 2 THITH_05075 PF00266 Aminotransferase class-V THITH_05090 PF07311 Dodecin THITH_05105 PF00464 Serine hydroxymethyltransferase THITH_05110 PF03477 ATP cone domain THITH_05115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THITH_05115 PF01872 RibD C-terminal domain THITH_05120 PF00677 Lumazine binding domain THITH_05125 PF00925 GTP cyclohydrolase II THITH_05125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THITH_05130 PF04551 GcpE protein THITH_05215 PF01867 CRISPR associated protein Cas1 THITH_05230 PF00144 Beta-lactamase THITH_05250 PF02641 Uncharacterized ACR, COG1993 THITH_05255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THITH_05260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THITH_05265 PF00144 Beta-lactamase THITH_05270 PF01061 ABC-2 type transporter THITH_05275 PF00005 ABC transporter THITH_05275 PF13732 Domain of unknown function (DUF4162) THITH_05310 PF00571 CBS domain THITH_05310 PF01769 Divalent cation transporter THITH_05310 PF03448 MgtE intracellular N domain THITH_05315 PF00571 CBS domain THITH_05315 PF01769 Divalent cation transporter THITH_05315 PF03448 MgtE intracellular N domain THITH_05320 PF00005 ABC transporter THITH_05325 PF12704 MacB-like periplasmic core domain THITH_05325 PF02687 FtsX-like permease family THITH_05340 PF00174 Oxidoreductase molybdopterin binding domain THITH_05345 PF01794 Ferric reductase like transmembrane component THITH_05355 PF00293 NUDIX domain THITH_05380 PF03861 ANTAR domain THITH_05380 PF08376 Nitrate and nitrite sensing THITH_05390 PF00528 Binding-protein-dependent transport system inner membrane component THITH_05395 PF00005 ABC transporter THITH_05400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THITH_05400 PF04324 BFD-like [2Fe-2S] binding domain THITH_05400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THITH_05400 PF18267 Rubredoxin NAD+ reductase C-terminal domain THITH_05400 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_05405 PF00355 Rieske [2Fe-2S] domain THITH_05410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_05410 PF00384 Molybdopterin oxidoreductase THITH_05410 PF01568 Molydopterin dinucleotide binding domain THITH_05410 PF04324 BFD-like [2Fe-2S] binding domain THITH_05415 PF00072 Response regulator receiver domain THITH_05420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_05420 PF17149 Periplasmic sensor domain found in signal transduction proteins THITH_05420 PF00072 Response regulator receiver domain THITH_05420 PF00672 HAMP domain THITH_05420 PF01627 Hpt domain THITH_05420 PF00512 His Kinase A (phospho-acceptor) domain THITH_05430 PF00586 AIR synthase related protein, N-terminal domain THITH_05430 PF02769 AIR synthase related protein, C-terminal domain THITH_05435 PF10017 Histidine-specific methyltransferase, SAM-dependent THITH_05440 PF12867 DinB superfamily THITH_05440 PF03781 Sulfatase-modifying factor enzyme 1 THITH_05450 PF08241 Methyltransferase domain THITH_05455 PF00664 ABC transporter transmembrane region THITH_05455 PF00005 ABC transporter THITH_05470 PF00563 EAL domain THITH_05470 PF12792 CSS motif domain associated with EAL THITH_05485 PF02696 Uncharacterized ACR, YdiU/UPF0061 family THITH_05505 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 THITH_05520 PF00535 Glycosyl transferase family 2 THITH_05530 PF00561 alpha/beta hydrolase fold THITH_05550 PF13614 AAA domain THITH_05570 PF00953 Glycosyl transferase family 4 THITH_05595 PF01850 PIN domain THITH_05625 PF01850 PIN domain THITH_05680 PF10996 Beta-Casp domain THITH_05680 PF00753 Metallo-beta-lactamase superfamily THITH_05680 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain THITH_05700 PF05973 Phage derived protein Gp49-like (DUF891) THITH_05710 PF02350 UDP-N-acetylglucosamine 2-epimerase THITH_05725 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system THITH_05725 PF01381 Helix-turn-helix THITH_05745 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THITH_05745 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THITH_05745 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THITH_05750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THITH_05750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THITH_05760 PF00132 Bacterial transferase hexapeptide (six repeats) THITH_05770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THITH_05775 PF01266 FAD dependent oxidoreductase THITH_05775 PF16901 C-terminal domain of alpha-glycerophosphate oxidase THITH_05805 PF02350 UDP-N-acetylglucosamine 2-epimerase THITH_05825 PF02698 DUF218 domain THITH_05850 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA THITH_05865 PF02698 DUF218 domain THITH_05935 PF02698 DUF218 domain THITH_05965 PF00171 Aldehyde dehydrogenase family THITH_05965 PF18327 Proline utilization A proline dehydrogenase N-terminal domain THITH_05965 PF01619 Proline dehydrogenase THITH_05965 PF14850 DNA-binding domain of Proline dehydrogenase THITH_06010 PF02698 DUF218 domain THITH_06020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THITH_06025 PF02719 Polysaccharide biosynthesis protein THITH_06030 PF02397 Bacterial sugar transferase THITH_06070 PF02547 Queuosine biosynthesis protein THITH_06075 PF01702 Queuine tRNA-ribosyltransferase THITH_06080 PF02699 Preprotein translocase subunit THITH_06085 PF02355 Protein export membrane protein THITH_06085 PF07549 SecD/SecF GG Motif THITH_06085 PF13721 SecD export protein N-terminal TM region THITH_06090 PF07549 SecD/SecF GG Motif THITH_06090 PF02355 Protein export membrane protein THITH_06095 PF00459 Inositol monophosphatase family THITH_06100 PF02754 Cysteine-rich domain THITH_06100 PF13183 4Fe-4S dicluster domain THITH_06105 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) THITH_06110 PF00463 Isocitrate lyase family THITH_06130 PF03781 Sulfatase-modifying factor enzyme 1 THITH_06130 PF12867 DinB superfamily THITH_06135 PF00056 lactate/malate dehydrogenase, NAD binding domain THITH_06135 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THITH_06140 PF01274 Malate synthase THITH_06145 PF02754 Cysteine-rich domain THITH_06145 PF13183 4Fe-4S dicluster domain THITH_06150 PF01565 FAD binding domain THITH_06155 PF02913 FAD linked oxidases, C-terminal domain THITH_06155 PF01565 FAD binding domain THITH_06190 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_06190 PF00403 Heavy-metal-associated domain THITH_06190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THITH_06205 PF01161 Phosphatidylethanolamine-binding protein THITH_06210 PF02028 BCCT, betaine/carnitine/choline family transporter THITH_06220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THITH_06220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THITH_06220 PF03129 Anticodon binding domain THITH_06220 PF02824 TGS domain THITH_06225 PF00707 Translation initiation factor IF-3, C-terminal domain THITH_06225 PF05198 Translation initiation factor IF-3, N-terminal domain THITH_06230 PF01632 Ribosomal protein L35 THITH_06235 PF00453 Ribosomal protein L20 THITH_06240 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THITH_06240 PF01409 tRNA synthetases class II core domain (F) THITH_06245 PF03484 tRNA synthetase B5 domain THITH_06245 PF03147 Ferredoxin-fold anticodon binding domain THITH_06245 PF01588 Putative tRNA binding domain THITH_06245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THITH_06245 PF03483 B3/4 domain THITH_06250 PF00216 Bacterial DNA-binding protein THITH_06265 PF00149 Calcineurin-like phosphoesterase THITH_06270 PF04379 ApaG domain THITH_06275 PF02685 Glucokinase THITH_06280 PF00398 Ribosomal RNA adenine dimethylase THITH_06285 PF04166 Pyridoxal phosphate biosynthetic protein PdxA THITH_06290 PF00639 PPIC-type PPIASE domain THITH_06290 PF09312 SurA N-terminal domain THITH_06295 PF04453 LPS transport system D THITH_06295 PF03968 OstA-like protein THITH_06300 PF00719 Inorganic pyrophosphatase THITH_06305 PF03717 Penicillin-binding Protein dimerisation domain THITH_06305 PF00905 Penicillin binding protein transpeptidase domain THITH_06310 PF01098 Cell cycle protein THITH_06315 PF13406 Transglycosylase SLT domain THITH_06320 PF03330 Lytic transglycolase THITH_06320 PF05036 Sporulation related domain THITH_06325 PF00768 D-alanyl-D-alanine carboxypeptidase THITH_06325 PF07943 Penicillin-binding protein 5, C-terminal domain THITH_06330 PF01063 Amino-transferase class IV THITH_06335 PF04359 Protein of unknown function (DUF493) THITH_06340 PF03099 Biotin/lipoate A/B protein ligase family THITH_06345 PF04055 Radical SAM superfamily THITH_06355 PF01722 BolA-like protein THITH_06360 PF00753 Metallo-beta-lactamase superfamily THITH_06360 PF16123 Hydroxyacylglutathione hydrolase C-terminus THITH_06380 PF03631 Virulence factor BrkB THITH_06395 PF13847 Methyltransferase domain THITH_06395 PF10119 Predicted methyltransferase regulatory domain THITH_06410 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain THITH_06410 PF00753 Metallo-beta-lactamase superfamily THITH_06410 PF10996 Beta-Casp domain THITH_06415 PF04055 Radical SAM superfamily THITH_06415 PF06969 HemN C-terminal domain THITH_06425 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase THITH_06425 PF13746 4Fe-4S dicluster domain THITH_06425 PF12801 4Fe-4S binding domain THITH_06430 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP THITH_06430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THITH_06445 PF00115 Cytochrome C and Quinol oxidase polypeptide I THITH_06450 PF01053 Cys/Met metabolism PLP-dependent enzyme THITH_06460 PF13545 Crp-like helix-turn-helix domain THITH_06460 PF00027 Cyclic nucleotide-binding domain THITH_06470 PF00970 Oxidoreductase FAD-binding domain THITH_06470 PF00111 2Fe-2S iron-sulfur cluster binding domain THITH_06470 PF00175 Oxidoreductase NAD-binding domain THITH_06475 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THITH_06485 PF01750 Hydrogenase maturation protease THITH_06495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THITH_06510 PF00535 Glycosyl transferase family 2 THITH_06520 PF13439 Glycosyltransferase Family 4 THITH_06520 PF00534 Glycosyl transferases group 1 THITH_06535 PF03734 L,D-transpeptidase catalytic domain THITH_06535 PF17969 L,D-transpeptidase C-terminal domain THITH_06565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THITH_06565 PF02403 Seryl-tRNA synthetase N-terminal domain THITH_06580 PF04241 Protein of unknown function (DUF423) THITH_06585 PF04461 Protein of unknown function (DUF520) THITH_06595 PF00355 Rieske [2Fe-2S] domain THITH_06595 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THITH_06600 PF01548 Transposase THITH_06600 PF02371 Transposase IS116/IS110/IS902 family THITH_06605 PF04445 Putative SAM-dependent methyltransferase THITH_06615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THITH_06615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THITH_06620 PF01027 Inhibitor of apoptosis-promoting Bax1 THITH_06625 PF01740 STAS domain THITH_06625 PF00916 Sulfate permease family THITH_06645 PF01112 Asparaginase THITH_06650 PF00990 Diguanylate cyclase, GGDEF domain THITH_06650 PF03707 Bacterial signalling protein N terminal repeat THITH_06650 PF00563 EAL domain THITH_06650 PF13188 PAS domain THITH_06700 PF01464 Transglycosylase SLT domain THITH_06705 PF03099 Biotin/lipoate A/B protein ligase family THITH_06705 PF02237 Biotin protein ligase C terminal domain THITH_06710 PF03309 Type III pantothenate kinase THITH_06735 PF13460 NAD(P)H-binding THITH_06735 PF11066 Protein of unknown function (DUF2867) THITH_06740 PF01040 UbiA prenyltransferase family THITH_06750 PF00374 Nickel-dependent hydrogenase THITH_06755 PF02754 Cysteine-rich domain THITH_06755 PF13183 4Fe-4S dicluster domain THITH_06765 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THITH_06765 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THITH_06775 PF01750 Hydrogenase maturation protease THITH_06785 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE THITH_06795 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA THITH_06800 PF02492 CobW/HypB/UreG, nucleotide-binding domain THITH_06805 PF17788 HypF Kae1-like domain THITH_06805 PF01300 Telomere recombination THITH_06805 PF07503 HypF finger THITH_06805 PF00708 Acylphosphatase THITH_06810 PF01230 HIT domain THITH_06815 PF07995 Glucose / Sorbosone dehydrogenase THITH_06835 PF01455 HupF/HypC family THITH_06840 PF01924 Hydrogenase formation hypA family THITH_06845 PF00586 AIR synthase related protein, N-terminal domain THITH_06845 PF02769 AIR synthase related protein, C-terminal domain THITH_06865 PF03264 NapC/NirT cytochrome c family, N-terminal region THITH_06870 PF00582 Universal stress protein family THITH_06880 PF03918 Cytochrome C biogenesis protein THITH_06885 PF08534 Redoxin THITH_06890 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal THITH_06890 PF01578 Cytochrome C assembly protein THITH_06895 PF03100 CcmE THITH_06905 PF01578 Cytochrome C assembly protein THITH_06910 PF03379 CcmB protein THITH_06915 PF00005 ABC transporter THITH_06930 PF01565 FAD binding domain THITH_06930 PF02913 FAD linked oxidases, C-terminal domain THITH_06940 PF01384 Phosphate transporter family THITH_06945 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THITH_06945 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THITH_06945 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_06950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THITH_06955 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THITH_06955 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THITH_06960 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THITH_06970 PF01546 Peptidase family M20/M25/M40 THITH_06970 PF07687 Peptidase dimerisation domain THITH_06975 PF00293 NUDIX domain THITH_06980 PF00563 EAL domain THITH_06980 PF00990 Diguanylate cyclase, GGDEF domain THITH_06980 PF03707 Bacterial signalling protein N terminal repeat THITH_06995 PF03030 Inorganic H+ pyrophosphatase THITH_07005 PF00501 AMP-binding enzyme THITH_07010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain THITH_07010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THITH_07010 PF00378 Enoyl-CoA hydratase/isomerase THITH_07015 PF00108 Thiolase, N-terminal domain THITH_07015 PF02803 Thiolase, C-terminal domain THITH_07020 PF09317 Domain of unknown function (DUF1974) THITH_07020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain THITH_07020 PF02770 Acyl-CoA dehydrogenase, middle domain THITH_07020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain THITH_07040 PF02684 Lipid-A-disaccharide synthetase THITH_07045 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THITH_07050 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THITH_07050 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THITH_07055 PF01351 Ribonuclease HII THITH_07060 PF07733 Bacterial DNA polymerase III alpha NTPase domain THITH_07060 PF01336 OB-fold nucleic acid binding domain THITH_07060 PF02811 PHP domain THITH_07060 PF14579 Helix-hairpin-helix motif THITH_07060 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THITH_07065 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit THITH_07070 PF09179 TilS substrate binding domain THITH_07070 PF01171 PP-loop family THITH_07070 PF11734 TilS substrate C-terminal domain THITH_07075 PF06418 CTP synthase N-terminus THITH_07075 PF00117 Glutamine amidotransferase class-I THITH_07080 PF00793 DAHP synthetase I family THITH_07085 PF03952 Enolase, N-terminal domain THITH_07085 PF00113 Enolase, C-terminal TIM barrel domain THITH_07090 PF04977 Septum formation initiator THITH_07095 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THITH_07100 PF03099 Biotin/lipoate A/B protein ligase family THITH_07100 PF10437 Bacterial lipoate protein ligase C-terminus THITH_07110 PF02542 YgbB family THITH_07135 PF00717 Peptidase S24-like THITH_07135 PF01726 LexA DNA binding domain THITH_07140 PF01061 ABC-2 type transporter THITH_07145 PF00005 ABC transporter THITH_07150 PF02254 TrkA-N domain THITH_07150 PF02080 TrkA-C domain THITH_07155 PF02386 Cation transport protein THITH_07165 PF07556 Protein of unknown function (DUF1538) THITH_07175 PF07556 Protein of unknown function (DUF1538) THITH_07195 PF01139 tRNA-splicing ligase RtcB THITH_07200 PF12161 HsdM N-terminal domain THITH_07200 PF02384 N-6 DNA Methylase THITH_07215 PF17191 RecG wedge domain THITH_07215 PF13749 Putative ATP-dependent DNA helicase recG C-terminal THITH_07215 PF00270 DEAD/DEAH box helicase THITH_07225 PF17191 RecG wedge domain THITH_07225 PF13749 Putative ATP-dependent DNA helicase recG C-terminal THITH_07225 PF00270 DEAD/DEAH box helicase THITH_07230 PF18766 SWI2/SNF2 ATPase THITH_07230 PF12008 Type I restriction and modification enzyme - subunit R C terminal THITH_07230 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) THITH_07245 PF10396 GTP-binding protein TrmE N-terminus THITH_07245 PF12631 MnmE helical domain THITH_07245 PF01926 50S ribosome-binding GTPase THITH_07250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase THITH_07250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THITH_07260 PF03960 ArsC family THITH_07265 PF00132 Bacterial transferase hexapeptide (six repeats) THITH_07265 PF14602 Hexapeptide repeat of succinyl-transferase THITH_07265 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal THITH_07270 PF00155 Aminotransferase class I and II THITH_07280 PF02082 Transcriptional regulator THITH_07285 PF01458 Uncharacterized protein family (UPF0051) THITH_07290 PF02657 Fe-S metabolism associated domain THITH_07295 PF00005 ABC transporter THITH_07300 PF01458 Uncharacterized protein family (UPF0051) THITH_07305 PF01883 Iron-sulfur cluster assembly protein THITH_07310 PF00355 Rieske [2Fe-2S] domain THITH_07315 PF01521 Iron-sulphur cluster biosynthesis THITH_07320 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THITH_07320 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THITH_07320 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THITH_07325 PF02773 S-adenosylmethionine synthetase, C-terminal domain THITH_07325 PF02772 S-adenosylmethionine synthetase, central domain THITH_07325 PF00438 S-adenosylmethionine synthetase, N-terminal domain THITH_07330 PF02080 TrkA-C domain THITH_07330 PF03600 Citrate transporter THITH_07335 PF00009 Elongation factor Tu GTP binding domain THITH_07340 PF00881 Nitroreductase family THITH_07360 PF11849 Domain of unknown function (DUF3369) THITH_07365 PF01435 Peptidase family M48 THITH_07370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_07400 PF01871 AMMECR1 THITH_07405 PF01875 Memo-like protein THITH_07415 PF00378 Enoyl-CoA hydratase/isomerase THITH_07415 PF00551 Formyl transferase THITH_07415 PF02911 Formyl transferase, C-terminal domain THITH_07420 PF01402 Ribbon-helix-helix protein, copG family THITH_07420 PF08753 NikR C terminal nickel binding domain THITH_07430 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THITH_07430 PF00925 GTP cyclohydrolase II THITH_07445 PF01891 Cobalt uptake substrate-specific transmembrane region THITH_07445 PF13190 PDGLE domain THITH_07455 PF00005 ABC transporter THITH_07460 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THITH_07460 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain THITH_07470 PF01625 Peptide methionine sulfoxide reductase THITH_07475 PF01619 Proline dehydrogenase THITH_07475 PF00171 Aldehyde dehydrogenase family THITH_07475 PF18327 Proline utilization A proline dehydrogenase N-terminal domain THITH_07475 PF14850 DNA-binding domain of Proline dehydrogenase THITH_07485 PF02594 Uncharacterised ACR, YggU family COG1872 THITH_07505 PF13237 4Fe-4S dicluster domain THITH_07505 PF12801 4Fe-4S binding domain THITH_07510 PF12838 4Fe-4S dicluster domain THITH_07510 PF12800 4Fe-4S binding domain THITH_07515 PF10518 TAT (twin-arginine translocation) pathway signal sequence THITH_07515 PF00384 Molybdopterin oxidoreductase THITH_07515 PF01568 Molydopterin dinucleotide binding domain THITH_07515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_07530 PF00561 alpha/beta hydrolase fold THITH_07535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain THITH_07535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THITH_07545 PF00571 CBS domain THITH_07590 PF00005 ABC transporter THITH_07595 PF01032 FecCD transport family THITH_07600 PF01497 Periplasmic binding protein THITH_07605 PF00749 tRNA synthetases class I (E and Q), catalytic domain THITH_07625 PF00749 tRNA synthetases class I (E and Q), catalytic domain THITH_07625 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain THITH_07630 PF00072 Response regulator receiver domain THITH_07630 PF00196 Bacterial regulatory proteins, luxR family THITH_07635 PF00989 PAS fold THITH_07635 PF00512 His Kinase A (phospho-acceptor) domain THITH_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_07655 PF02545 Maf-like protein THITH_07660 PF02436 Conserved carboxylase domain THITH_07660 PF00682 HMGL-like THITH_07660 PF00364 Biotin-requiring enzyme THITH_07665 PF00289 Biotin carboxylase, N-terminal domain THITH_07665 PF02785 Biotin carboxylase C-terminal domain THITH_07665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THITH_07675 PF01783 Ribosomal L32p protein family THITH_07680 PF02504 Fatty acid synthesis protein THITH_07685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III THITH_07685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal THITH_07695 PF03167 Uracil DNA glycosylase superfamily THITH_07700 PF01541 GIY-YIG catalytic domain THITH_07700 PF02151 UvrB/uvrC motif THITH_07700 PF08459 UvrC Helix-hairpin-helix N-terminal THITH_07705 PF01066 CDP-alcohol phosphatidyltransferase THITH_07720 PF00535 Glycosyl transferase family 2 THITH_07740 PF00871 Acetokinase family THITH_07745 PF01515 Phosphate acetyl/butaryl transferase THITH_07775 PF04542 Sigma-70 region 2 THITH_07775 PF04545 Sigma-70, region 4 THITH_07785 PF08031 Berberine and berberine like THITH_07785 PF01565 FAD binding domain THITH_07805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THITH_07835 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal THITH_07835 PF02769 AIR synthase related protein, C-terminal domain THITH_07835 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THITH_07840 PF01451 Low molecular weight phosphotyrosine protein phosphatase THITH_07845 PF12111 Polyribonucleotide phosphorylase C terminal THITH_07845 PF10150 Ribonuclease E/G family THITH_07845 PF00575 S1 RNA binding domain THITH_07850 PF00512 His Kinase A (phospho-acceptor) domain THITH_07850 PF00989 PAS fold THITH_07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_07855 PF00990 Diguanylate cyclase, GGDEF domain THITH_07855 PF00563 EAL domain THITH_07855 PF03707 Bacterial signalling protein N terminal repeat THITH_07860 PF01479 S4 domain THITH_07860 PF00849 RNA pseudouridylate synthase THITH_07865 PF13419 Haloacid dehalogenase-like hydrolase THITH_07870 PF06965 Na+/H+ antiporter 1 THITH_07870 PF01343 Peptidase family S49 THITH_07880 PF00270 DEAD/DEAH box helicase THITH_07880 PF17757 UvrB interaction domain THITH_07880 PF02559 CarD-like/TRCF domain THITH_07880 PF03461 TRCF domain THITH_07880 PF00271 Helicase conserved C-terminal domain THITH_07890 PF00795 Carbon-nitrogen hydrolase THITH_07895 PF04371 Porphyromonas-type peptidyl-arginine deiminase THITH_07905 PF02687 FtsX-like permease family THITH_07905 PF12704 MacB-like periplasmic core domain THITH_07910 PF00005 ABC transporter THITH_07920 PF03772 Competence protein THITH_07920 PF00753 Metallo-beta-lactamase superfamily THITH_07925 PF01008 Initiation factor 2 subunit family THITH_07930 PF03989 DNA gyrase C-terminal domain, beta-propeller THITH_07930 PF00521 DNA gyrase/topoisomerase IV, subunit A THITH_07935 PF00266 Aminotransferase class-V THITH_07940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THITH_07940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THITH_07940 PF01842 ACT domain THITH_07945 PF00800 Prephenate dehydratase THITH_07945 PF01817 Chorismate mutase type II THITH_07945 PF01842 ACT domain THITH_07950 PF00155 Aminotransferase class I and II THITH_07955 PF01842 ACT domain THITH_07955 PF02153 Prephenate dehydrogenase THITH_07960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THITH_07965 PF02224 Cytidylate kinase THITH_07970 PF00575 S1 RNA binding domain THITH_07975 PF00216 Bacterial DNA-binding protein THITH_07980 PF18073 Rubredoxin metal binding domain THITH_07985 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THITH_07990 PF10531 SLBB domain THITH_07995 PF00483 Nucleotidyl transferase THITH_08010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THITH_08010 PF01872 RibD C-terminal domain THITH_08020 PF00534 Glycosyl transferases group 1 THITH_08020 PF13439 Glycosyltransferase Family 4 THITH_08050 PF04381 Putative exonuclease, RdgC THITH_08060 PF02885 Glycosyl transferase family, helical bundle domain THITH_08060 PF00591 Glycosyl transferase family, a/b domain THITH_08140 PF00873 AcrB/AcrD/AcrF family THITH_08145 PF03466 LysR substrate binding domain THITH_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_08150 PF00478 IMP dehydrogenase / GMP reductase domain THITH_08150 PF00571 CBS domain THITH_08165 PF04358 DsrC like protein THITH_08170 PF00196 Bacterial regulatory proteins, luxR family THITH_08170 PF00072 Response regulator receiver domain THITH_08175 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term THITH_08175 PF07730 Histidine kinase THITH_08175 PF00672 HAMP domain THITH_08175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_08180 PF07690 Major Facilitator Superfamily THITH_08185 PF07690 Major Facilitator Superfamily THITH_08190 PF07690 Major Facilitator Superfamily THITH_08195 PF14710 Respiratory nitrate reductase alpha N-terminal THITH_08195 PF01568 Molydopterin dinucleotide binding domain THITH_08195 PF00384 Molybdopterin oxidoreductase THITH_08200 PF14711 Respiratory nitrate reductase beta C-terminal THITH_08200 PF13247 4Fe-4S dicluster domain THITH_08205 PF02613 Nitrate reductase delta subunit THITH_08210 PF02665 Nitrate reductase gamma subunit THITH_08215 PF04358 DsrC like protein THITH_08220 PF09312 SurA N-terminal domain THITH_08240 PF00400 WD domain, G-beta repeat THITH_08240 PF00069 Protein kinase domain THITH_08300 PF05685 Putative restriction endonuclease THITH_08305 PF04434 SWIM zinc finger THITH_08305 PF00176 SNF2 family N-terminal domain THITH_08305 PF00271 Helicase conserved C-terminal domain THITH_08310 PF08676 MutL C terminal dimerisation domain THITH_08310 PF01119 DNA mismatch repair protein, C-terminal domain THITH_08350 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system THITH_08360 PF03061 Thioesterase superfamily THITH_08365 PF00501 AMP-binding enzyme THITH_08370 PF13378 Enolase C-terminal domain-like THITH_08375 PF00378 Enoyl-CoA hydratase/isomerase THITH_08380 PF12697 Alpha/beta hydrolase family THITH_08385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THITH_08385 PF16582 Middle domain of thiamine pyrophosphate THITH_08385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THITH_08390 PF00425 chorismate binding enzyme THITH_08400 PF00092 von Willebrand factor type A domain THITH_08405 PF08406 CbbQ/NirQ/NorQ C-terminal THITH_08405 PF07728 AAA domain (dynein-related subfamily) THITH_08410 PF00115 Cytochrome C and Quinol oxidase polypeptide I THITH_08415 PF00034 Cytochrome c THITH_08420 PF05573 NosL THITH_08425 PF18764 Nitrous oxide reductase propeller repeat THITH_08425 PF18793 Nitrous oxide reductase propeller repeat 2 THITH_08430 PF12679 ABC-2 family transporter protein THITH_08435 PF00005 ABC transporter THITH_08440 PF05048 Periplasmic copper-binding protein (NosD) THITH_08445 PF04205 FMN-binding domain THITH_08445 PF12801 4Fe-4S binding domain THITH_08460 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain THITH_08460 PF01835 MG2 domain THITH_08460 PF11974 Bacterial alpha-2-macroglobulin MG3 domain THITH_08460 PF07703 Alpha-2-macroglobulin bait region domain THITH_08460 PF07678 A-macroglobulin TED domain THITH_08460 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain THITH_08460 PF00207 Alpha-2-macroglobulin family THITH_08460 PF17962 Bacterial macroglobulin domain 6 THITH_08460 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain THITH_08465 PF00905 Penicillin binding protein transpeptidase domain THITH_08465 PF00912 Transglycosylase THITH_08465 PF06832 Penicillin-Binding Protein C-terminus Family THITH_08505 PF00005 ABC transporter THITH_08510 PF02687 FtsX-like permease family THITH_08510 PF00005 ABC transporter THITH_08510 PF12704 MacB-like periplasmic core domain THITH_08550 PF06736 Protein of unknown function (DUF1211) THITH_08570 PF03466 LysR substrate binding domain THITH_08570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_08575 PF05726 Pirin C-terminal cupin domain THITH_08575 PF02678 Pirin THITH_08580 PF00857 Isochorismatase family THITH_08610 PF00271 Helicase conserved C-terminal domain THITH_08610 PF17757 UvrB interaction domain THITH_08610 PF04851 Type III restriction enzyme, res subunit THITH_08610 PF02151 UvrB/uvrC motif THITH_08610 PF12344 Ultra-violet resistance protein B THITH_08620 PF00933 Glycosyl hydrolase family 3 N terminal domain THITH_08625 PF00403 Heavy-metal-associated domain THITH_08640 PF01048 Phosphorylase superfamily THITH_08655 PF00581 Rhodanese-like domain THITH_08655 PF00899 ThiF family THITH_08675 PF00202 Aminotransferase class-III THITH_08680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system THITH_08685 PF00528 Binding-protein-dependent transport system inner membrane component THITH_08690 PF00571 CBS domain THITH_08690 PF00005 ABC transporter THITH_08700 PF00266 Aminotransferase class-V THITH_08710 PF09115 DNA polymerase III, delta subunit, C terminal THITH_08715 PF02223 Thymidylate kinase THITH_08720 PF02618 YceG-like family THITH_08725 PF01063 Amino-transferase class IV THITH_08730 PF00425 chorismate binding enzyme THITH_08730 PF04715 Anthranilate synthase component I, N terminal region THITH_08735 PF02801 Beta-ketoacyl synthase, C-terminal domain THITH_08735 PF00109 Beta-ketoacyl synthase, N-terminal domain THITH_08740 PF00550 Phosphopantetheine attachment site THITH_08750 PF00698 Acyl transferase domain THITH_08755 PF01176 Translation initiation factor 1A / IF-1 THITH_08760 PF00004 ATPase family associated with various cellular activities (AAA) THITH_08760 PF07724 AAA domain (Cdc48 subfamily) THITH_08760 PF17871 AAA lid domain THITH_08760 PF02861 Clp amino terminal domain, pathogenicity island component THITH_08760 PF10431 C-terminal, D2-small domain, of ClpB protein THITH_08765 PF02617 ATP-dependent Clp protease adaptor protein ClpS THITH_08770 PF00180 Isocitrate/isopropylmalate dehydrogenase THITH_08775 PF00293 NUDIX domain THITH_08775 PF13344 Haloacid dehalogenase-like hydrolase THITH_08785 PF04356 Protein of unknown function (DUF489) THITH_08790 PF00330 Aconitase family (aconitate hydratase) THITH_08790 PF00694 Aconitase C-terminal domain THITH_08795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THITH_08800 PF00873 AcrB/AcrD/AcrF family THITH_08805 PF00497 Bacterial extracellular solute-binding proteins, family 3 THITH_08805 PF01464 Transglycosylase SLT domain THITH_08810 PF00206 Lyase THITH_08810 PF10415 Fumarase C C-terminus THITH_08815 PF00206 Lyase THITH_08815 PF08328 Adenylosuccinate lyase C-terminal THITH_08820 PF08007 Cupin superfamily protein THITH_08825 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin THITH_08830 PF01850 PIN domain THITH_08865 PF00403 Heavy-metal-associated domain THITH_08870 PF00034 Cytochrome c THITH_08880 PF00403 Heavy-metal-associated domain THITH_08915 PF00486 Transcriptional regulatory protein, C terminal THITH_08915 PF00072 Response regulator receiver domain THITH_08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_08920 PF08918 PhoQ Sensor THITH_08925 PF07884 Vitamin K epoxide reductase family THITH_08940 PF00072 Response regulator receiver domain THITH_08940 PF00486 Transcriptional regulatory protein, C terminal THITH_08945 PF00512 His Kinase A (phospho-acceptor) domain THITH_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_08945 PF00672 HAMP domain THITH_08955 PF00310 Glutamine amidotransferases class-II THITH_08955 PF04898 Glutamate synthase central domain THITH_08955 PF01493 GXGXG motif THITH_08955 PF01645 Conserved region in glutamate synthase THITH_08960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THITH_08960 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_08970 PF00990 Diguanylate cyclase, GGDEF domain THITH_08970 PF08448 PAS fold THITH_08975 PF01207 Dihydrouridine synthase (Dus) THITH_08985 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_08985 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THITH_08985 PF10518 TAT (twin-arginine translocation) pathway signal sequence THITH_09000 PF00034 Cytochrome c THITH_09010 PF00158 Sigma-54 interaction domain THITH_09010 PF00072 Response regulator receiver domain THITH_09010 PF02954 Bacterial regulatory protein, Fis family THITH_09020 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain THITH_09020 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THITH_09025 PF02789 Cytosol aminopeptidase family, N-terminal domain THITH_09025 PF00883 Cytosol aminopeptidase family, catalytic domain THITH_09030 PF00005 ABC transporter THITH_09035 PF01061 ABC-2 type transporter THITH_09040 PF01551 Peptidase family M23 THITH_09040 PF08525 Opacity-associated protein A N-terminal motif THITH_09040 PF01476 LysM domain THITH_09045 PF01266 FAD dependent oxidoreductase THITH_09045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase THITH_09050 PF04055 Radical SAM superfamily THITH_09050 PF11842 Domain of unknown function (DUF3362) THITH_09050 PF08497 Radical SAM N-terminal THITH_09055 PF01645 Conserved region in glutamate synthase THITH_09055 PF13187 4Fe-4S dicluster domain THITH_09060 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region THITH_09060 PF01243 Pyridoxamine 5'-phosphate oxidase THITH_09085 PF01979 Amidohydrolase family THITH_09095 PF13419 Haloacid dehalogenase-like hydrolase THITH_09100 PF02646 RmuC family THITH_09115 PF01593 Flavin containing amine oxidoreductase THITH_09120 PF00072 Response regulator receiver domain THITH_09120 PF00196 Bacterial regulatory proteins, luxR family THITH_09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_09125 PF00512 His Kinase A (phospho-acceptor) domain THITH_09125 PF00989 PAS fold THITH_09135 PF00106 short chain dehydrogenase THITH_09150 PF00873 AcrB/AcrD/AcrF family THITH_09155 PF01180 Dihydroorotate dehydrogenase THITH_09180 PF12848 ABC transporter THITH_09180 PF00005 ABC transporter THITH_09185 PF00011 Hsp20/alpha crystallin family THITH_09190 PF00011 Hsp20/alpha crystallin family THITH_09195 PF01556 DnaJ C terminal domain THITH_09195 PF00226 DnaJ domain THITH_09205 PF00990 Diguanylate cyclase, GGDEF domain THITH_09205 PF13426 PAS domain THITH_09205 PF00563 EAL domain THITH_09235 PF09827 CRISPR associated protein Cas2 THITH_09245 PF01867 CRISPR associated protein Cas1 THITH_09245 PF01930 Domain of unknown function DUF83 THITH_09250 PF09827 CRISPR associated protein Cas2 THITH_09310 PF09827 CRISPR associated protein Cas2 THITH_09320 PF09827 CRISPR associated protein Cas2 THITH_09345 PF03787 RAMP superfamily THITH_09355 PF18211 Csm1 subunit domain B THITH_09355 PF01966 HD domain THITH_09360 PF02599 Global regulator protein family THITH_09370 PF02599 Global regulator protein family THITH_09375 PF01842 ACT domain THITH_09375 PF00696 Amino acid kinase family THITH_09375 PF13840 ACT domain THITH_09380 PF02272 DHHA1 domain THITH_09380 PF01411 tRNA synthetases class II (A) THITH_09380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THITH_09385 PF02631 RecX family THITH_09390 PF00154 recA bacterial DNA recombination protein THITH_09395 PF18146 Damage-inducible protein CinA KH domain THITH_09395 PF00994 Probable molybdopterin binding domain THITH_09395 PF02464 Competence-damaged protein THITH_09400 PF05192 MutS domain III THITH_09400 PF00488 MutS domain V THITH_09400 PF01624 MutS domain I THITH_09400 PF05188 MutS domain II THITH_09400 PF05190 MutS family domain IV THITH_09405 PF00037 4Fe-4S binding domain THITH_09405 PF11953 Domain of unknown function (DUF3470) THITH_09415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THITH_09415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THITH_09415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THITH_09415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THITH_09425 PF03937 Flavinator of succinate dehydrogenase THITH_09430 PF13085 2Fe-2S iron-sulfur cluster binding domain THITH_09435 PF00890 FAD binding domain THITH_09435 PF02910 Fumarate reductase flavoprotein C-term THITH_09440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit THITH_09450 PF01571 Aminomethyltransferase folate-binding domain THITH_09460 PF00679 Elongation factor G C-terminus THITH_09460 PF00009 Elongation factor Tu GTP binding domain THITH_09460 PF03764 Elongation factor G, domain IV THITH_09460 PF14492 Elongation Factor G, domain II THITH_09470 PF03707 Bacterial signalling protein N terminal repeat THITH_09470 PF00990 Diguanylate cyclase, GGDEF domain THITH_09470 PF00563 EAL domain THITH_09480 PF01336 OB-fold nucleic acid binding domain THITH_09480 PF00152 tRNA synthetases class II (D, K and N) THITH_09490 PF00171 Aldehyde dehydrogenase family THITH_09495 PF00180 Isocitrate/isopropylmalate dehydrogenase THITH_09510 PF00501 AMP-binding enzyme THITH_09510 PF00975 Thioesterase domain THITH_09510 PF13193 AMP-binding enzyme C-terminal domain THITH_09510 PF00550 Phosphopantetheine attachment site THITH_09510 PF00668 Condensation domain THITH_09530 PF01479 S4 domain THITH_09530 PF00849 RNA pseudouridylate synthase THITH_09540 PF04079 Segregation and condensation complex subunit ScpB THITH_09545 PF02616 Segregation and condensation protein ScpA THITH_09550 PF00579 tRNA synthetases class I (W and Y) THITH_09560 PF02163 Peptidase family M50 THITH_09565 PF01300 Telomere recombination THITH_09570 PF03795 YCII-related domain THITH_09580 PF00533 BRCA1 C Terminus (BRCT) domain THITH_09580 PF01653 NAD-dependent DNA ligase adenylation domain THITH_09580 PF12826 Helix-hairpin-helix motif THITH_09580 PF03120 NAD-dependent DNA ligase OB-fold domain THITH_09580 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THITH_09585 PF04354 ZipA, C-terminal FtsZ-binding domain THITH_09590 PF02463 RecF/RecN/SMC N terminal domain THITH_09590 PF06470 SMC proteins Flexible Hinge Domain THITH_09595 PF14489 QueF-like protein THITH_09600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THITH_09620 PF00912 Transglycosylase THITH_09625 PF04298 Putative neutral zinc metallopeptidase THITH_09630 PF03776 Septum formation topological specificity factor MinE THITH_09635 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THITH_09640 PF03775 Septum formation inhibitor MinC, C-terminal domain THITH_09640 PF05209 Septum formation inhibitor MinC, N-terminal domain THITH_09655 PF00990 Diguanylate cyclase, GGDEF domain THITH_09655 PF03707 Bacterial signalling protein N terminal repeat THITH_09655 PF00563 EAL domain THITH_09660 PF01968 Hydantoinase/oxoprolinase THITH_09660 PF05378 Hydantoinase/oxoprolinase N-terminal region THITH_09710 PF00857 Isochorismatase family THITH_09715 PF00285 Citrate synthase, C-terminal domain THITH_09725 PF00753 Metallo-beta-lactamase superfamily THITH_09745 PF00535 Glycosyl transferase family 2 THITH_09745 PF00795 Carbon-nitrogen hydrolase THITH_09755 PF13439 Glycosyltransferase Family 4 THITH_09755 PF00534 Glycosyl transferases group 1 THITH_09765 PF05922 Peptidase inhibitor I9 THITH_09765 PF00082 Subtilase family THITH_09765 PF04151 Bacterial pre-peptidase C-terminal domain THITH_09770 PF04151 Bacterial pre-peptidase C-terminal domain THITH_09770 PF00082 Subtilase family THITH_09795 PF13276 HTH-like domain THITH_09795 PF00665 Integrase core domain THITH_09795 PF13333 Integrase core domain THITH_09820 PF04151 Bacterial pre-peptidase C-terminal domain THITH_09820 PF09286 Pro-kumamolisin, activation domain THITH_09855 PF00535 Glycosyl transferase family 2 THITH_09875 PF08241 Methyltransferase domain THITH_09880 PF14524 Wzt C-terminal domain THITH_09880 PF00005 ABC transporter THITH_09890 PF13439 Glycosyltransferase Family 4 THITH_09890 PF00534 Glycosyl transferases group 1 THITH_09895 PF16363 GDP-mannose 4,6 dehydratase THITH_09900 PF16363 GDP-mannose 4,6 dehydratase THITH_09945 PF00535 Glycosyl transferase family 2 THITH_09950 PF04349 Periplasmic glucan biosynthesis protein, MdoG THITH_09975 PF00939 Sodium:sulfate symporter transmembrane region THITH_09980 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THITH_09980 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THITH_09985 PF00202 Aminotransferase class-III THITH_09990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THITH_09990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THITH_09995 PF13089 Polyphosphate kinase N-terminal domain THITH_09995 PF17941 Polyphosphate kinase C-terminal domain 1 THITH_09995 PF02503 Polyphosphate kinase middle domain THITH_09995 PF13090 Polyphosphate kinase C-terminal domain 2 THITH_10000 PF02541 Ppx/GppA phosphatase family THITH_10010 PF13230 Glutamine amidotransferases class-II THITH_10035 PF00005 ABC transporter THITH_10035 PF14524 Wzt C-terminal domain THITH_10045 PF00534 Glycosyl transferases group 1 THITH_10045 PF13439 Glycosyltransferase Family 4 THITH_10050 PF02585 GlcNAc-PI de-N-acetylase THITH_10055 PF02446 4-alpha-glucanotransferase THITH_10065 PF00483 Nucleotidyl transferase THITH_10070 PF00128 Alpha amylase, catalytic domain THITH_10070 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THITH_10070 PF02806 Alpha amylase, C-terminal all-beta domain THITH_10085 PF00005 ABC transporter THITH_10085 PF00664 ABC transporter transmembrane region THITH_10095 PF02397 Bacterial sugar transferase THITH_10100 PF03808 Glycosyl transferase WecB/TagA/CpsF family THITH_10120 PF02719 Polysaccharide biosynthesis protein THITH_10125 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 THITH_10125 PF00953 Glycosyl transferase family 4 THITH_10135 PF00535 Glycosyl transferase family 2 THITH_10160 PF00263 Bacterial type II and III secretion system protein THITH_10160 PF03958 Bacterial type II/III secretion system short domain THITH_10200 PF07963 Prokaryotic N-terminal methylation motif THITH_10200 PF08334 Type II secretion system (T2SS), protein G THITH_10205 PF00482 Type II secretion system (T2SS), protein F THITH_10210 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THITH_10210 PF00437 Type II/IV secretion system protein THITH_10215 PF16363 GDP-mannose 4,6 dehydratase THITH_10220 PF00483 Nucleotidyl transferase THITH_10225 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase THITH_10230 PF04321 RmlD substrate binding domain THITH_10235 PF13514 AAA domain THITH_10240 PF00149 Calcineurin-like phosphoesterase THITH_10255 PF01476 LysM domain THITH_10255 PF01464 Transglycosylase SLT domain THITH_10260 PF01471 Putative peptidoglycan binding domain THITH_10260 PF03734 L,D-transpeptidase catalytic domain THITH_10280 PF00990 Diguanylate cyclase, GGDEF domain THITH_10280 PF00360 Phytochrome region THITH_10280 PF00563 EAL domain THITH_10280 PF01590 GAF domain THITH_10295 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain THITH_10295 PF07228 Stage II sporulation protein E (SpoIIE) THITH_10320 PF00361 Proton-conducting membrane transporter THITH_10325 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus THITH_10325 PF00361 Proton-conducting membrane transporter THITH_10330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THITH_10330 PF00361 Proton-conducting membrane transporter THITH_10335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THITH_10340 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THITH_10345 PF00037 4Fe-4S binding domain THITH_10350 PF00146 NADH dehydrogenase THITH_10355 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THITH_10355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THITH_10355 PF00384 Molybdopterin oxidoreductase THITH_10360 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THITH_10360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THITH_10360 PF10531 SLBB domain THITH_10370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THITH_10375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THITH_10380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THITH_10385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THITH_10390 PF00343 Carbohydrate phosphorylase THITH_10400 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THITH_10400 PF00132 Bacterial transferase hexapeptide (six repeats) THITH_10405 PF07977 FabA-like domain THITH_10410 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD THITH_10410 PF00132 Bacterial transferase hexapeptide (six repeats) THITH_10420 PF07244 Surface antigen variable number repeat THITH_10420 PF01103 Surface antigen THITH_10425 PF02163 Peptidase family M50 THITH_10425 PF17820 PDZ domain THITH_10430 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain THITH_10430 PF13288 DXP reductoisomerase C-terminal domain THITH_10430 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase THITH_10440 PF01255 Putative undecaprenyl diphosphate synthase THITH_10445 PF01765 Ribosome recycling factor THITH_10450 PF00696 Amino acid kinase family THITH_10455 PF00889 Elongation factor TS THITH_10465 PF00557 Metallopeptidase family M24 THITH_10470 PF01966 HD domain THITH_10470 PF08335 GlnD PII-uridylyltransferase THITH_10470 PF01909 Nucleotidyltransferase domain THITH_10480 PF00270 DEAD/DEAH box helicase THITH_10480 PF04408 Helicase associated domain (HA2) THITH_10480 PF00271 Helicase conserved C-terminal domain THITH_10480 PF08482 ATP-dependent helicase C-terminal THITH_10520 PF13472 GDSL-like Lipase/Acylhydrolase family THITH_10525 PF00005 ABC transporter THITH_10535 PF04607 Region found in RelA / SpoT proteins THITH_10535 PF13291 ACT domain THITH_10535 PF02824 TGS domain THITH_10555 PF00484 Carbonic anhydrase THITH_10570 PF05175 Methyltransferase small domain THITH_10570 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus THITH_10575 PF07995 Glucose / Sorbosone dehydrogenase THITH_10595 PF13085 2Fe-2S iron-sulfur cluster binding domain THITH_10595 PF13183 4Fe-4S dicluster domain THITH_10600 PF02910 Fumarate reductase flavoprotein C-term THITH_10600 PF00890 FAD binding domain THITH_10605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit THITH_10620 PF00753 Metallo-beta-lactamase superfamily THITH_10620 PF12706 Beta-lactamase superfamily domain THITH_10625 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain THITH_10625 PF01137 RNA 3'-terminal phosphate cyclase THITH_10640 PF01842 ACT domain THITH_10640 PF00551 Formyl transferase THITH_10645 PF00561 alpha/beta hydrolase fold THITH_10650 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) THITH_10655 PF00108 Thiolase, N-terminal domain THITH_10655 PF02803 Thiolase, C-terminal domain THITH_10660 PF05233 PHB accumulation regulatory domain THITH_10660 PF07879 PHB/PHA accumulation regulator DNA-binding domain THITH_10670 PF00106 short chain dehydrogenase THITH_10675 PF00497 Bacterial extracellular solute-binding proteins, family 3 THITH_10675 PF01464 Transglycosylase SLT domain THITH_10680 PF14437 MafB19-like deaminase THITH_10690 PF02470 MlaD protein THITH_10695 PF00005 ABC transporter THITH_10700 PF02405 Permease MlaE THITH_10705 PF07726 ATPase family associated with various cellular activities (AAA) THITH_10705 PF17863 AAA lid domain THITH_10715 PF11992 Domain of unknown function (DUF3488) THITH_10715 PF13559 Domain of unknown function (DUF4129) THITH_10715 PF01841 Transglutaminase-like superfamily THITH_10720 PF02082 Transcriptional regulator THITH_10725 PF03734 L,D-transpeptidase catalytic domain THITH_10725 PF17969 L,D-transpeptidase C-terminal domain THITH_10730 PF00156 Phosphoribosyl transferase domain THITH_10735 PF02674 Colicin V production protein THITH_10745 PF08245 Mur ligase middle domain THITH_10745 PF02875 Mur ligase family, glutamate ligase domain THITH_10750 PF17848 Acetyl-coA carboxylase zinc finger domain THITH_10750 PF01039 Carboxyl transferase domain THITH_10755 PF00290 Tryptophan synthase alpha chain THITH_10760 PF00291 Pyridoxal-phosphate dependent enzyme THITH_10765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase THITH_10770 PF01416 tRNA pseudouridine synthase THITH_10785 PF01118 Semialdehyde dehydrogenase, NAD binding domain THITH_10785 PF02774 Semialdehyde dehydrogenase, dimerisation domain THITH_10790 PF00180 Isocitrate/isopropylmalate dehydrogenase THITH_10795 PF00694 Aconitase C-terminal domain THITH_10800 PF00330 Aconitase family (aconitate hydratase) THITH_10805 PF08502 LeuA allosteric (dimerisation) domain THITH_10805 PF00682 HMGL-like THITH_10810 PF01037 Lrp/AsnC ligand binding domain THITH_10815 PF10417 C-terminal domain of 1-Cys peroxiredoxin THITH_10815 PF00578 AhpC/TSA family THITH_10820 PF00578 AhpC/TSA family THITH_10820 PF10417 C-terminal domain of 1-Cys peroxiredoxin THITH_10825 PF13537 Glutamine amidotransferase domain THITH_10825 PF00733 Asparagine synthase THITH_10840 PF01734 Patatin-like phospholipase THITH_10850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THITH_10855 PF00873 AcrB/AcrD/AcrF family THITH_10875 PF00483 Nucleotidyl transferase THITH_10880 PF05726 Pirin C-terminal cupin domain THITH_10880 PF02678 Pirin THITH_10885 PF08402 TOBE domain THITH_10885 PF00005 ABC transporter THITH_10890 PF00528 Binding-protein-dependent transport system inner membrane component THITH_10895 PF00528 Binding-protein-dependent transport system inner membrane component THITH_10905 PF01661 Macro domain THITH_10910 PF00106 short chain dehydrogenase THITH_10915 PF02577 Bifunctional nuclease THITH_10925 PF00561 alpha/beta hydrolase fold THITH_10940 PF05872 Bacterial protein of unknown function (DUF853) THITH_10955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THITH_10955 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_10970 PF01979 Amidohydrolase family THITH_10975 PF03695 Uncharacterised protein family (UPF0149) THITH_10975 PF02810 SEC-C motif THITH_11020 PF03600 Citrate transporter THITH_11020 PF02080 TrkA-C domain THITH_11025 PF01043 SecA preprotein cross-linking domain THITH_11025 PF02810 SEC-C motif THITH_11025 PF07517 SecA DEAD-like domain THITH_11025 PF07516 SecA Wing and Scaffold domain THITH_11035 PF08463 EcoEI R protein C-terminal THITH_11035 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) THITH_11035 PF04851 Type III restriction enzyme, res subunit THITH_11035 PF00271 Helicase conserved C-terminal domain THITH_11040 PF02661 Fic/DOC family THITH_11040 PF13784 Fic/DOC family N-terminal THITH_11045 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THITH_11050 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system THITH_11060 PF01420 Type I restriction modification DNA specificity domain THITH_11065 PF12161 HsdM N-terminal domain THITH_11065 PF02384 N-6 DNA Methylase THITH_11090 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THITH_11095 PF05685 Putative restriction endonuclease THITH_11110 PF01850 PIN domain THITH_11115 PF13361 UvrD-like helicase C-terminal domain THITH_11115 PF00580 UvrD/REP helicase N-terminal domain THITH_11130 PF01850 PIN domain THITH_11145 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family THITH_11170 PF12697 Alpha/beta hydrolase family THITH_11175 PF14319 Transposase zinc-binding domain THITH_11175 PF04986 Putative transposase THITH_11180 PF13495 Phage integrase, N-terminal SAM-like domain THITH_11180 PF00589 Phage integrase family THITH_11185 PF03050 Transposase IS66 family THITH_11185 PF13817 IS66 C-terminal element THITH_11185 PF13007 Transposase C of IS166 homeodomain THITH_11185 PF13005 zinc-finger binding domain of transposase IS66 THITH_11200 PF05717 IS66 Orf2 like protein THITH_11210 PF00589 Phage integrase family THITH_11210 PF13495 Phage integrase, N-terminal SAM-like domain THITH_11220 PF01425 Amidase THITH_11250 PF00128 Alpha amylase, catalytic domain THITH_11250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THITH_11260 PF00128 Alpha amylase, catalytic domain THITH_11260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THITH_11265 PF00128 Alpha amylase, catalytic domain THITH_11270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THITH_11270 PF00128 Alpha amylase, catalytic domain THITH_11275 PF00723 Glycosyl hydrolases family 15 THITH_11280 PF02163 Peptidase family M50 THITH_11280 PF00571 CBS domain THITH_11290 PF00501 AMP-binding enzyme THITH_11290 PF13193 AMP-binding enzyme C-terminal domain THITH_11305 PF10005 zinc-ribbon domain THITH_11305 PF15887 Putative zinc-binding metallo-peptidase THITH_11345 PF00899 ThiF family THITH_11345 PF00581 Rhodanese-like domain THITH_11350 PF03190 Protein of unknown function, DUF255 THITH_11355 PF01790 Prolipoprotein diacylglyceryl transferase THITH_11360 PF00303 Thymidylate synthase THITH_11365 PF00186 Dihydrofolate reductase THITH_11375 PF00950 ABC 3 transport family THITH_11380 PF00005 ABC transporter THITH_11385 PF01297 Zinc-uptake complex component A periplasmic THITH_11390 PF01219 Prokaryotic diacylglycerol kinase THITH_11395 PF02347 Glycine cleavage system P-protein THITH_11400 PF02347 Glycine cleavage system P-protein THITH_11405 PF01597 Glycine cleavage H-protein THITH_11410 PF08669 Glycine cleavage T-protein C-terminal barrel domain THITH_11410 PF01571 Aminomethyltransferase folate-binding domain THITH_11415 PF01494 FAD binding domain THITH_11420 PF01494 FAD binding domain THITH_11425 PF05195 Aminopeptidase P, N-terminal domain THITH_11425 PF00557 Metallopeptidase family M24 THITH_11430 PF03695 Uncharacterised protein family (UPF0149) THITH_11440 PF05164 Cell division protein ZapA THITH_11445 PF01812 5-formyltetrahydrofolate cyclo-ligase family THITH_11460 PF00672 HAMP domain THITH_11460 PF00512 His Kinase A (phospho-acceptor) domain THITH_11460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_11505 PF02384 N-6 DNA Methylase THITH_11515 PF00585 C-terminal regulatory domain of Threonine dehydratase THITH_11515 PF00291 Pyridoxal-phosphate dependent enzyme THITH_11520 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) THITH_11540 PF05114 Protein of unknown function (DUF692) THITH_11555 PF12833 Helix-turn-helix domain THITH_11555 PF06719 AraC-type transcriptional regulator N-terminus THITH_11570 PF02673 Bacitracin resistance protein BacA THITH_11610 PF13609 Gram-negative porin THITH_11615 PF04608 Phosphatidylglycerophosphatase A THITH_11620 PF02769 AIR synthase related protein, C-terminal domain THITH_11620 PF00586 AIR synthase related protein, N-terminal domain THITH_11625 PF01029 NusB family THITH_11630 PF00885 6,7-dimethyl-8-ribityllumazine synthase THITH_11635 PF13439 Glycosyltransferase Family 4 THITH_11635 PF00534 Glycosyl transferases group 1 THITH_11640 PF01569 PAP2 superfamily THITH_11645 PF00224 Pyruvate kinase, barrel domain THITH_11645 PF02887 Pyruvate kinase, alpha/beta domain THITH_11655 PF13439 Glycosyltransferase Family 4 THITH_11655 PF00534 Glycosyl transferases group 1 THITH_11665 PF01568 Molydopterin dinucleotide binding domain THITH_11665 PF00384 Molybdopterin oxidoreductase THITH_11665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_11670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_11670 PF00384 Molybdopterin oxidoreductase THITH_11670 PF01568 Molydopterin dinucleotide binding domain THITH_11675 PF09163 Formate dehydrogenase N, transmembrane THITH_11675 PF13247 4Fe-4S dicluster domain THITH_11680 PF01292 Prokaryotic cytochrome b561 THITH_11685 PF04216 Protein involved in formate dehydrogenase formation THITH_11720 PF12390 Selenocysteine synthase N terminal THITH_11720 PF03841 L-seryl-tRNA selenium transferase THITH_11725 PF00009 Elongation factor Tu GTP binding domain THITH_11725 PF03144 Elongation factor Tu domain 2 THITH_11725 PF09107 Elongation factor SelB, winged helix THITH_11725 PF09106 Elongation factor SelB, winged helix THITH_11735 PF00005 ABC transporter THITH_11740 PF00528 Binding-protein-dependent transport system inner membrane component THITH_11745 PF00586 AIR synthase related protein, N-terminal domain THITH_11745 PF02769 AIR synthase related protein, C-terminal domain THITH_11750 PF01850 PIN domain THITH_11780 PF02678 Pirin THITH_11780 PF05726 Pirin C-terminal cupin domain THITH_11790 PF01895 PhoU domain THITH_11795 PF00005 ABC transporter THITH_11800 PF00528 Binding-protein-dependent transport system inner membrane component THITH_11805 PF00528 Binding-protein-dependent transport system inner membrane component THITH_11810 PF12849 PBP superfamily domain THITH_11820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_11820 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THITH_11830 PF00512 His Kinase A (phospho-acceptor) domain THITH_11830 PF00989 PAS fold THITH_11830 PF11808 Phosphate regulon sensor protein PhoR THITH_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_11835 PF00072 Response regulator receiver domain THITH_11835 PF00486 Transcriptional regulatory protein, C terminal THITH_11840 PF00970 Oxidoreductase FAD-binding domain THITH_11840 PF00175 Oxidoreductase NAD-binding domain THITH_11845 PF08448 PAS fold THITH_11845 PF00990 Diguanylate cyclase, GGDEF domain THITH_11850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family THITH_11855 PF03707 Bacterial signalling protein N terminal repeat THITH_11855 PF00990 Diguanylate cyclase, GGDEF domain THITH_11855 PF00563 EAL domain THITH_11860 PF01502 Phosphoribosyl-AMP cyclohydrolase THITH_11865 PF09190 DALR domain THITH_11865 PF01406 tRNA synthetases class I (C) catalytic domain THITH_11875 PF03824 High-affinity nickel-transport protein THITH_11880 PF00501 AMP-binding enzyme THITH_11885 PF00155 Aminotransferase class I and II THITH_11890 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THITH_11890 PF01926 50S ribosome-binding GTPase THITH_11895 PF13360 PQQ-like domain THITH_11905 PF03129 Anticodon binding domain THITH_11905 PF13393 Histidyl-tRNA synthetase THITH_11920 PF04055 Radical SAM superfamily THITH_11925 PF00334 Nucleoside diphosphate kinase THITH_11930 PF02082 Transcriptional regulator THITH_11935 PF00132 Bacterial transferase hexapeptide (six repeats) THITH_11940 PF00588 SpoU rRNA Methylase family THITH_11960 PF04358 DsrC like protein THITH_11980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THITH_11980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THITH_11985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THITH_11985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THITH_11990 PF02635 DsrE/DsrF-like family THITH_11995 PF02635 DsrE/DsrF-like family THITH_12000 PF04077 DsrH like protein THITH_12005 PF04358 DsrC like protein THITH_12020 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THITH_12020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THITH_12020 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_12030 PF13247 4Fe-4S dicluster domain THITH_12040 PF07685 CobB/CobQ-like glutamine amidotransferase domain THITH_12040 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THITH_12045 PF01521 Iron-sulphur cluster biosynthesis THITH_12050 PF18331 PKHD-type hydroxylase C-terminal domain THITH_12050 PF13640 2OG-Fe(II) oxygenase superfamily THITH_12065 PF02348 Cytidylyltransferase THITH_12070 PF03966 Trm112p-like protein THITH_12075 PF02606 Tetraacyldisaccharide-1-P 4'-kinase THITH_12085 PF00664 ABC transporter transmembrane region THITH_12085 PF00005 ABC transporter THITH_12090 PF02472 Biopolymer transport protein ExbD/TolR THITH_12095 PF01618 MotA/TolQ/ExbB proton channel family THITH_12100 PF05958 tRNA (Uracil-5-)-methyltransferase THITH_12110 PF00291 Pyridoxal-phosphate dependent enzyme THITH_12115 PF01648 4'-phosphopantetheinyl transferase superfamily THITH_12120 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ THITH_12125 PF02565 Recombination protein O C terminal THITH_12125 PF11967 Recombination protein O N terminal THITH_12130 PF01926 50S ribosome-binding GTPase THITH_12130 PF07650 KH domain THITH_12135 PF00035 Double-stranded RNA binding motif THITH_12135 PF14622 Ribonuclease-III-like THITH_12145 PF10502 Signal peptidase, peptidase S26 THITH_12150 PF00679 Elongation factor G C-terminus THITH_12150 PF00009 Elongation factor Tu GTP binding domain THITH_12150 PF06421 GTP-binding protein LepA C-terminus THITH_12160 PF13180 PDZ domain THITH_12175 PF03873 Anti sigma-E protein RseA, C-terminal domain THITH_12175 PF03872 Anti sigma-E protein RseA, N-terminal domain THITH_12180 PF04542 Sigma-70 region 2 THITH_12180 PF08281 Sigma-70, region 4 THITH_12185 PF00890 FAD binding domain THITH_12185 PF02910 Fumarate reductase flavoprotein C-term THITH_12190 PF00929 Exonuclease THITH_12200 PF01329 Pterin 4 alpha carbinolamine dehydratase THITH_12205 PF03193 RsgA GTPase THITH_12215 PF01230 HIT domain THITH_12220 PF02132 RecR protein THITH_12220 PF13662 Toprim domain THITH_12225 PF02575 YbaB/EbfC DNA-binding family THITH_12230 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding THITH_12230 PF12170 DNA polymerase III tau subunit V interacting with alpha THITH_12230 PF12169 DNA polymerase III subunits gamma and tau domain III THITH_12230 PF12170 DNA polymerase III tau subunit V interacting with alpha THITH_12230 PF12169 DNA polymerase III subunits gamma and tau domain III THITH_12230 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding THITH_12235 PF08534 Redoxin THITH_12235 PF00462 Glutaredoxin THITH_12240 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_12240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THITH_12245 PF01142 tRNA pseudouridine synthase D (TruD) THITH_12250 PF00814 Glycoprotease family THITH_12255 PF13307 Helicase C-terminal domain THITH_12255 PF04851 Type III restriction enzyme, res subunit THITH_12265 PF00912 Transglycosylase THITH_12265 PF00905 Penicillin binding protein transpeptidase domain THITH_12265 PF14814 Bifunctional transglycosylase second domain THITH_12280 PF00877 NlpC/P60 family THITH_12290 PF00994 Probable molybdopterin binding domain THITH_12295 PF02657 Fe-S metabolism associated domain THITH_12305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_12305 PF03466 LysR substrate binding domain THITH_12325 PF00210 Ferritin-like domain THITH_12365 PF00101 Ribulose bisphosphate carboxylase, small chain THITH_12370 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THITH_12370 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THITH_12380 PF14760 Rnk N-terminus THITH_12380 PF01272 Transcription elongation factor, GreA/GreB, C-term THITH_12390 PF00563 EAL domain THITH_12390 PF00990 Diguanylate cyclase, GGDEF domain THITH_12390 PF03707 Bacterial signalling protein N terminal repeat THITH_12400 PF02311 AraC-like ligand binding domain THITH_12400 PF12833 Helix-turn-helix domain THITH_12410 PF07152 YaeQ protein THITH_12425 PF03466 LysR substrate binding domain THITH_12425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_12430 PF08267 Cobalamin-independent synthase, N-terminal domain THITH_12430 PF01717 Cobalamin-independent synthase, Catalytic domain THITH_12455 PF05433 Glycine zipper 2TM domain THITH_12455 PF16998 17 kDa outer membrane surface antigen THITH_12465 PF05430 S-adenosyl-L-methionine-dependent methyltransferase THITH_12465 PF01266 FAD dependent oxidoreductase THITH_12480 PF00535 Glycosyl transferase family 2 THITH_12495 PF00535 Glycosyl transferase family 2 THITH_12525 PF01627 Hpt domain THITH_12525 PF00672 HAMP domain THITH_12525 PF00072 Response regulator receiver domain THITH_12525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_12525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THITH_12525 PF00512 His Kinase A (phospho-acceptor) domain THITH_12530 PF13614 AAA domain THITH_12540 PF08298 PrkA AAA domain THITH_12540 PF06798 PrkA serine protein kinase C-terminal domain THITH_12545 PF04285 Protein of unknown function (DUF444) THITH_12550 PF04293 SpoVR like protein THITH_12555 PF07885 Ion channel THITH_12590 PF03330 Lytic transglycolase THITH_12605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_12605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THITH_12620 PF01596 O-methyltransferase THITH_12630 PF13406 Transglycosylase SLT domain THITH_12645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain THITH_12645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain THITH_12655 PF08241 Methyltransferase domain THITH_12710 PF05230 MASE2 domain THITH_12710 PF00990 Diguanylate cyclase, GGDEF domain THITH_12715 PF14437 MafB19-like deaminase THITH_12720 PF14338 Mrr N-terminal domain THITH_12720 PF04471 Restriction endonuclease THITH_12765 PF01592 NifU-like N terminal domain THITH_12770 PF00266 Aminotransferase class-V THITH_12790 PF02540 NAD synthase THITH_12790 PF00958 GMP synthase C terminal domain THITH_12790 PF00117 Glutamine amidotransferase class-I THITH_12795 PF00478 IMP dehydrogenase / GMP reductase domain THITH_12795 PF00571 CBS domain THITH_12800 PF02601 Exonuclease VII, large subunit THITH_12800 PF13742 OB-fold nucleic acid binding domain THITH_12805 PF13419 Haloacid dehalogenase-like hydrolase THITH_12810 PF01258 Prokaryotic dksA/traR C4-type zinc finger THITH_12815 PF00749 tRNA synthetases class I (E and Q), catalytic domain THITH_12825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_12830 PF00072 Response regulator receiver domain THITH_12830 PF02954 Bacterial regulatory protein, Fis family THITH_12830 PF00158 Sigma-54 interaction domain THITH_12845 PF00474 Sodium:solute symporter family THITH_12860 PF16177 Acetyl-coenzyme A synthetase N-terminus THITH_12860 PF00501 AMP-binding enzyme THITH_12860 PF13193 AMP-binding enzyme C-terminal domain THITH_12875 PF14403 Circularly permuted ATP-grasp type 2 THITH_12880 PF08241 Methyltransferase domain THITH_12885 PF00575 S1 RNA binding domain THITH_12885 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THITH_12885 PF01138 3' exoribonuclease family, domain 1 THITH_12885 PF00013 KH domain THITH_12885 PF03725 3' exoribonuclease family, domain 2 THITH_12890 PF00312 Ribosomal protein S15 THITH_12895 PF09157 Pseudouridine synthase II TruB, C-terminal THITH_12895 PF01509 TruB family pseudouridylate synthase (N terminal domain) THITH_12895 PF16198 tRNA pseudouridylate synthase B C-terminal domain THITH_12900 PF02033 Ribosome-binding factor A THITH_12905 PF03144 Elongation factor Tu domain 2 THITH_12905 PF00009 Elongation factor Tu GTP binding domain THITH_12905 PF04760 Translation initiation factor IF-2, N-terminal region THITH_12905 PF11987 Translation-initiation factor 2 THITH_12905 PF08364 Bacterial translation initiation factor IF-2 associated region THITH_12910 PF13184 NusA-like KH domain THITH_12910 PF08529 NusA N-terminal domain THITH_12915 PF02576 RimP N-terminal domain THITH_12915 PF17384 RimP C-terminal SH3 domain THITH_12925 PF00361 Proton-conducting membrane transporter THITH_12930 PF00361 Proton-conducting membrane transporter THITH_12930 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus THITH_12935 PF00361 Proton-conducting membrane transporter THITH_12935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THITH_12940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THITH_12945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THITH_12950 PF12838 4Fe-4S dicluster domain THITH_12955 PF00146 NADH dehydrogenase THITH_12960 PF00384 Molybdopterin oxidoreductase THITH_12960 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THITH_12960 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THITH_12965 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THITH_12965 PF10531 SLBB domain THITH_12965 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THITH_12975 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THITH_12980 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THITH_12985 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THITH_12990 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THITH_13000 PF03840 Preprotein translocase SecG subunit THITH_13005 PF00121 Triosephosphate isomerase THITH_13010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THITH_13010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THITH_13010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THITH_13010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THITH_13015 PF00809 Pterin binding enzyme THITH_13020 PF00004 ATPase family associated with various cellular activities (AAA) THITH_13020 PF17862 AAA+ lid domain THITH_13020 PF06480 FtsH Extracellular THITH_13020 PF01434 Peptidase family M41 THITH_13025 PF01728 FtsJ-like methyltransferase THITH_13030 PF01985 CRS1 / YhbY (CRM) domain THITH_13035 PF01272 Transcription elongation factor, GreA/GreB, C-term THITH_13035 PF03449 Transcription elongation factor, N-terminal THITH_13040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THITH_13040 PF02142 MGS-like domain THITH_13040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THITH_13045 PF00117 Glutamine amidotransferase class-I THITH_13045 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THITH_13055 PF05173 Dihydrodipicolinate reductase, C-terminus THITH_13055 PF01113 Dihydrodipicolinate reductase, N-terminus THITH_13060 PF12832 MFS_1 like family THITH_13070 PF01264 Chorismate synthase THITH_13080 PF05175 Methyltransferase small domain THITH_13090 PF02666 Phosphatidylserine decarboxylase THITH_13095 PF00152 tRNA synthetases class II (D, K and N) THITH_13100 PF08207 Elongation factor P (EF-P) KOW-like domain THITH_13100 PF09285 Elongation factor P, C-terminal THITH_13100 PF01132 Elongation factor P (EF-P) OB domain THITH_13105 PF04055 Radical SAM superfamily THITH_13115 PF05231 MASE1 THITH_13115 PF00563 EAL domain THITH_13120 PF00226 DnaJ domain THITH_13120 PF00684 DnaJ central domain THITH_13120 PF01556 DnaJ C terminal domain THITH_13125 PF00012 Hsp70 protein THITH_13130 PF01025 GrpE THITH_13135 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding THITH_13135 PF01628 HrcA protein C terminal domain THITH_13140 PF01513 ATP-NAD kinase THITH_13145 PF02463 RecF/RecN/SMC N terminal domain THITH_13150 PF01475 Ferric uptake regulator family THITH_13155 PF04355 SmpA / OmlA family THITH_13160 PF03658 RnfH family Ubiquitin THITH_13165 PF03364 Polyketide cyclase / dehydrase and lipid transport THITH_13170 PF00209 Sodium:neurotransmitter symporter family THITH_13175 PF01668 SmpB protein THITH_13180 PF00929 Exonuclease THITH_13185 PF00075 RNase H THITH_13195 PF01464 Transglycosylase SLT domain THITH_13215 PF01894 Uncharacterised protein family UPF0047 THITH_13220 PF00679 Elongation factor G C-terminus THITH_13220 PF03144 Elongation factor Tu domain 2 THITH_13220 PF00009 Elongation factor Tu GTP binding domain THITH_13220 PF03764 Elongation factor G, domain IV THITH_13220 PF14492 Elongation Factor G, domain II THITH_13240 PF03150 Di-haem cytochrome c peroxidase THITH_13250 PF02472 Biopolymer transport protein ExbD/TolR THITH_13255 PF01618 MotA/TolQ/ExbB proton channel family THITH_13260 PF03544 Gram-negative bacterial TonB protein C-terminal THITH_13275 PF00593 TonB dependent receptor THITH_13275 PF07715 TonB-dependent Receptor Plug Domain THITH_13285 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_13285 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THITH_13285 PF10518 TAT (twin-arginine translocation) pathway signal sequence THITH_13295 PF00158 Sigma-54 interaction domain THITH_13295 PF02954 Bacterial regulatory protein, Fis family THITH_13295 PF00072 Response regulator receiver domain THITH_13300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_13315 PF00005 ABC transporter THITH_13315 PF02687 FtsX-like permease family THITH_13315 PF12704 MacB-like periplasmic core domain THITH_13320 PF00005 ABC transporter THITH_13320 PF02687 FtsX-like permease family THITH_13320 PF12704 MacB-like periplasmic core domain THITH_13325 PF00005 ABC transporter THITH_13330 PF00005 ABC transporter THITH_13330 PF02687 FtsX-like permease family THITH_13330 PF12704 MacB-like periplasmic core domain THITH_13345 PF05425 Copper resistance protein D THITH_13350 PF02416 mttA/Hcf106 family THITH_13355 PF01914 MarC family integral membrane protein THITH_13360 PF00158 Sigma-54 interaction domain THITH_13360 PF00072 Response regulator receiver domain THITH_13360 PF02954 Bacterial regulatory protein, Fis family THITH_13385 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) THITH_13385 PF01348 Type II intron maturase THITH_13415 PF00216 Bacterial DNA-binding protein THITH_13420 PF02190 ATP-dependent protease La (LON) substrate-binding domain THITH_13420 PF05362 Lon protease (S16) C-terminal proteolytic domain THITH_13420 PF00004 ATPase family associated with various cellular activities (AAA) THITH_13425 PF07724 AAA domain (Cdc48 subfamily) THITH_13425 PF10431 C-terminal, D2-small domain, of ClpB protein THITH_13425 PF06689 ClpX C4-type zinc finger THITH_13435 PF00574 Clp protease THITH_13440 PF05697 Bacterial trigger factor protein (TF) THITH_13440 PF05698 Bacterial trigger factor protein (TF) C-terminus THITH_13440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_13450 PF01926 50S ribosome-binding GTPase THITH_13450 PF13167 GTP-binding GTPase N-terminal THITH_13450 PF16360 GTP-binding GTPase Middle Region THITH_13455 PF17209 Hfq protein THITH_13465 PF01119 DNA mismatch repair protein, C-terminal domain THITH_13465 PF08676 MutL C terminal dimerisation domain THITH_13470 PF11741 AMIN domain THITH_13470 PF01520 N-acetylmuramoyl-L-alanine amidase THITH_13475 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THITH_13480 PF03853 YjeF-related protein N-terminus THITH_13480 PF01256 Carbohydrate kinase THITH_13485 PF08331 Domain of unknown function (DUF1730) THITH_13490 PF00986 DNA gyrase B subunit, carboxyl terminus THITH_13490 PF00204 DNA gyrase B THITH_13490 PF01751 Toprim domain THITH_13490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_13495 PF00085 Thioredoxin THITH_13500 PF10411 Disulfide bond isomerase protein N-terminus THITH_13500 PF13098 Thioredoxin-like domain THITH_13505 PF02899 Phage integrase, N-terminal SAM-like domain THITH_13505 PF00589 Phage integrase family THITH_13510 PF01145 SPFH domain / Band 7 family THITH_13510 PF16200 C-terminal region of band_7 THITH_13520 PF03205 Molybdopterin guanine dinucleotide synthesis protein B THITH_13525 PF00994 Probable molybdopterin binding domain THITH_13525 PF03454 MoeA C-terminal region (domain IV) THITH_13525 PF03453 MoeA N-terminal region (domain I and II) THITH_13535 PF00128 Alpha amylase, catalytic domain THITH_13550 PF00005 ABC transporter THITH_13550 PF02687 FtsX-like permease family THITH_13550 PF12704 MacB-like periplasmic core domain THITH_13560 PF00545 ribonuclease THITH_13565 PF00472 RF-1 domain THITH_13570 PF00294 pfkB family carbohydrate kinase THITH_13580 PF13472 GDSL-like Lipase/Acylhydrolase family THITH_13585 PF02028 BCCT, betaine/carnitine/choline family transporter THITH_13600 PF00342 Phosphoglucose isomerase THITH_13605 PF08323 Starch synthase catalytic domain THITH_13605 PF00534 Glycosyl transferases group 1 THITH_13610 PF00311 Phosphoenolpyruvate carboxylase THITH_13615 PF02261 Aspartate decarboxylase THITH_13620 PF02569 Pantoate-beta-alanine ligase THITH_13625 PF02548 Ketopantoate hydroxymethyltransferase THITH_13630 PF01712 Deoxynucleoside kinase THITH_13635 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THITH_13640 PF12626 Polymerase A arginine-rich C-terminus THITH_13640 PF12627 Probable RNA and SrmB- binding site of polymerase A THITH_13640 PF01743 Poly A polymerase head domain THITH_13645 PF00293 NUDIX domain THITH_13650 PF01479 S4 domain THITH_13655 PF13417 Glutathione S-transferase, N-terminal domain THITH_13655 PF00043 Glutathione S-transferase, C-terminal domain THITH_13660 PF03692 Putative zinc- or iron-chelating domain THITH_13680 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THITH_13680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THITH_13685 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THITH_13685 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THITH_13690 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THITH_13710 PF04972 BON domain THITH_13710 PF00691 OmpA family THITH_13715 PF12792 CSS motif domain associated with EAL THITH_13715 PF00563 EAL domain THITH_13720 PF02911 Formyl transferase, C-terminal domain THITH_13720 PF00551 Formyl transferase THITH_13735 PF00534 Glycosyl transferases group 1 THITH_13740 PF12419 SNF2 Helicase protein THITH_13740 PF00176 SNF2 family N-terminal domain THITH_13740 PF00271 Helicase conserved C-terminal domain THITH_13745 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA THITH_13750 PF04434 SWIM zinc finger THITH_13750 PF00176 SNF2 family N-terminal domain THITH_13750 PF00271 Helicase conserved C-terminal domain THITH_13765 PF09618 CRISPR-associated protein (Cas_Csy4) THITH_13770 PF09615 CRISPR-associated protein (Cas_Csy3) THITH_13775 PF09614 CRISPR-associated protein (Cas_Csy2) THITH_13780 PF09611 CRISPR-associated protein (Cas_Csy1) THITH_13785 PF18019 HD domain THITH_13790 PF01867 CRISPR associated protein Cas1 THITH_13815 PF13435 Cytochrome c554 and c-prime THITH_13820 PF00027 Cyclic nucleotide-binding domain THITH_13820 PF13545 Crp-like helix-turn-helix domain THITH_13835 PF04751 Protein of unknown function (DUF615) THITH_13845 PF00578 AhpC/TSA family THITH_13855 PF00067 Cytochrome P450 THITH_13865 PF00550 Phosphopantetheine attachment site THITH_13865 PF00668 Condensation domain THITH_13865 PF00975 Thioesterase domain THITH_13865 PF13193 AMP-binding enzyme C-terminal domain THITH_13865 PF00501 AMP-binding enzyme THITH_13875 PF01242 6-pyruvoyl tetrahydropterin synthase THITH_13880 PF09371 Tex-like protein N-terminal domain THITH_13880 PF17674 HHH domain THITH_13880 PF16921 Tex protein YqgF-like domain THITH_13880 PF00575 S1 RNA binding domain THITH_13905 PF03707 Bacterial signalling protein N terminal repeat THITH_13905 PF00990 Diguanylate cyclase, GGDEF domain THITH_13905 PF00563 EAL domain THITH_13920 PF02472 Biopolymer transport protein ExbD/TolR THITH_13925 PF01618 MotA/TolQ/ExbB proton channel family THITH_13930 PF03544 Gram-negative bacterial TonB protein C-terminal THITH_13935 PF00210 Ferritin-like domain THITH_13940 PF01654 Cytochrome bd terminal oxidase subunit I THITH_13945 PF02322 Cytochrome bd terminal oxidase subunit II THITH_13950 PF00664 ABC transporter transmembrane region THITH_13950 PF00005 ABC transporter THITH_13955 PF00005 ABC transporter THITH_13955 PF00664 ABC transporter transmembrane region THITH_13965 PF00990 Diguanylate cyclase, GGDEF domain THITH_13965 PF00563 EAL domain THITH_13965 PF13426 PAS domain THITH_13970 PF00004 ATPase family associated with various cellular activities (AAA) THITH_13970 PF07724 AAA domain (Cdc48 subfamily) THITH_13970 PF17871 AAA lid domain THITH_13970 PF02861 Clp amino terminal domain, pathogenicity island component THITH_13970 PF10431 C-terminal, D2-small domain, of ClpB protein THITH_13980 PF01479 S4 domain THITH_13980 PF00849 RNA pseudouridylate synthase THITH_13985 PF13525 Outer membrane lipoprotein THITH_13990 PF00543 Nitrogen regulatory protein P-II THITH_13995 PF02540 NAD synthase THITH_13995 PF00795 Carbon-nitrogen hydrolase THITH_14000 PF02629 CoA binding domain THITH_14000 PF00549 CoA-ligase THITH_14005 PF00549 CoA-ligase THITH_14005 PF08442 ATP-grasp domain THITH_14015 PF00512 His Kinase A (phospho-acceptor) domain THITH_14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_14020 PF02954 Bacterial regulatory protein, Fis family THITH_14020 PF00072 Response regulator receiver domain THITH_14020 PF00158 Sigma-54 interaction domain THITH_14025 PF02545 Maf-like protein THITH_14030 PF02590 Predicted SPOUT methyltransferase THITH_14040 PF01467 Cytidylyltransferase-like THITH_14045 PF00171 Aldehyde dehydrogenase family THITH_14060 PF13603 Leucyl-tRNA synthetase, Domain 2 THITH_14060 PF00133 tRNA synthetases class I (I, L, M and V) THITH_14060 PF08264 Anticodon-binding domain of tRNA THITH_14065 PF16901 C-terminal domain of alpha-glycerophosphate oxidase THITH_14065 PF01266 FAD dependent oxidoreductase THITH_14070 PF00343 Carbohydrate phosphorylase THITH_14105 PF00005 ABC transporter THITH_14120 PF00795 Carbon-nitrogen hydrolase THITH_14125 PF03471 Transporter associated domain THITH_14125 PF00571 CBS domain THITH_14130 PF02130 Uncharacterized protein family UPF0054 THITH_14135 PF02562 PhoH-like protein THITH_14140 PF04055 Radical SAM superfamily THITH_14140 PF00919 Uncharacterized protein family UPF0004 THITH_14140 PF01938 TRAM domain THITH_14145 PF00436 Single-strand binding protein family THITH_14150 PF07690 Major Facilitator Superfamily THITH_14155 PF00005 ABC transporter THITH_14155 PF17755 UvrA DNA-binding domain THITH_14155 PF17760 UvrA interaction domain THITH_14160 PF01196 Ribosomal protein L17 THITH_14165 PF01000 RNA polymerase Rpb3/RpoA insert domain THITH_14165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THITH_14165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THITH_14170 PF00163 Ribosomal protein S4/S9 N-terminal domain THITH_14170 PF01479 S4 domain THITH_14175 PF00411 Ribosomal protein S11 THITH_14180 PF00416 Ribosomal protein S13/S18 THITH_14185 PF00444 Ribosomal protein L36 THITH_14190 PF00344 SecY translocase THITH_14195 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THITH_14200 PF00327 Ribosomal protein L30p/L7e THITH_14205 PF00333 Ribosomal protein S5, N-terminal domain THITH_14205 PF03719 Ribosomal protein S5, C-terminal domain THITH_14210 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THITH_14215 PF00347 Ribosomal protein L6 THITH_14220 PF00410 Ribosomal protein S8 THITH_14225 PF00253 Ribosomal protein S14p/S29e THITH_14230 PF00281 Ribosomal protein L5 THITH_14230 PF00673 ribosomal L5P family C-terminus THITH_14235 PF00467 KOW motif THITH_14235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THITH_14240 PF00238 Ribosomal protein L14p/L23e THITH_14245 PF00366 Ribosomal protein S17 THITH_14250 PF00831 Ribosomal L29 protein THITH_14255 PF00252 Ribosomal protein L16p/L10e THITH_14260 PF07650 KH domain THITH_14260 PF00189 Ribosomal protein S3, C-terminal domain THITH_14265 PF00237 Ribosomal protein L22p/L17e THITH_14270 PF00203 Ribosomal protein S19 THITH_14275 PF03947 Ribosomal Proteins L2, C-terminal domain THITH_14275 PF00181 Ribosomal Proteins L2, RNA binding domain THITH_14280 PF00276 Ribosomal protein L23 THITH_14285 PF00573 Ribosomal protein L4/L1 family THITH_14290 PF00297 Ribosomal protein L3 THITH_14295 PF00338 Ribosomal protein S10p/S20e THITH_14300 PF03144 Elongation factor Tu domain 2 THITH_14300 PF03143 Elongation factor Tu C-terminal domain THITH_14300 PF00009 Elongation factor Tu GTP binding domain THITH_14305 PF00679 Elongation factor G C-terminus THITH_14305 PF03764 Elongation factor G, domain IV THITH_14305 PF00009 Elongation factor Tu GTP binding domain THITH_14305 PF03144 Elongation factor Tu domain 2 THITH_14305 PF14492 Elongation Factor G, domain II THITH_14310 PF00177 Ribosomal protein S7p/S5e THITH_14315 PF00164 Ribosomal protein S12/S23 THITH_14320 PF04997 RNA polymerase Rpb1, domain 1 THITH_14320 PF04983 RNA polymerase Rpb1, domain 3 THITH_14320 PF04998 RNA polymerase Rpb1, domain 5 THITH_14320 PF00623 RNA polymerase Rpb1, domain 2 THITH_14320 PF05000 RNA polymerase Rpb1, domain 4 THITH_14325 PF00562 RNA polymerase Rpb2, domain 6 THITH_14325 PF10385 RNA polymerase beta subunit external 1 domain THITH_14325 PF04563 RNA polymerase beta subunit THITH_14325 PF04560 RNA polymerase Rpb2, domain 7 THITH_14325 PF04561 RNA polymerase Rpb2, domain 2 THITH_14325 PF04565 RNA polymerase Rpb2, domain 3 THITH_14330 PF00542 Ribosomal protein L7/L12 C-terminal domain THITH_14330 PF16320 Ribosomal protein L7/L12 dimerisation domain THITH_14335 PF00466 Ribosomal protein L10 THITH_14340 PF00687 Ribosomal protein L1p/L10e family THITH_14345 PF00298 Ribosomal protein L11, RNA binding domain THITH_14345 PF03946 Ribosomal protein L11, N-terminal domain THITH_14350 PF00467 KOW motif THITH_14350 PF02357 Transcription termination factor nusG THITH_14355 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THITH_14365 PF00009 Elongation factor Tu GTP binding domain THITH_14365 PF03144 Elongation factor Tu domain 2 THITH_14365 PF03143 Elongation factor Tu C-terminal domain THITH_14385 PF00437 Type II/IV secretion system protein THITH_14385 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THITH_14390 PF00482 Type II secretion system (T2SS), protein F THITH_14395 PF06750 Bacterial Peptidase A24 N-terminal domain THITH_14395 PF01478 Type IV leader peptidase family THITH_14405 PF07072 Cell division protein THITH_14410 PF00293 NUDIX domain THITH_14415 PF01960 ArgJ family THITH_14420 PF07517 SecA DEAD-like domain THITH_14420 PF01043 SecA preprotein cross-linking domain THITH_14420 PF07516 SecA Wing and Scaffold domain THITH_14420 PF02810 SEC-C motif THITH_14430 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase THITH_14435 PF12327 FtsZ family, C-terminal domain THITH_14435 PF00091 Tubulin/FtsZ family, GTPase domain THITH_14440 PF02491 SHS2 domain inserted in FTSA THITH_14445 PF03799 Cell division protein FtsQ THITH_14445 PF08478 POTRA domain, FtsQ-type THITH_14450 PF07478 D-ala D-ala ligase C-terminus THITH_14450 PF01820 D-ala D-ala ligase N-terminus THITH_14455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THITH_14455 PF01565 FAD binding domain THITH_14460 PF01225 Mur ligase family, catalytic domain THITH_14460 PF02875 Mur ligase family, glutamate ligase domain THITH_14460 PF08245 Mur ligase middle domain THITH_14465 PF03033 Glycosyltransferase family 28 N-terminal domain THITH_14465 PF04101 Glycosyltransferase family 28 C-terminal domain THITH_14470 PF01098 Cell cycle protein THITH_14475 PF08245 Mur ligase middle domain THITH_14475 PF02875 Mur ligase family, glutamate ligase domain THITH_14480 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 THITH_14480 PF00953 Glycosyl transferase family 4 THITH_14485 PF08245 Mur ligase middle domain THITH_14485 PF01225 Mur ligase family, catalytic domain THITH_14485 PF02875 Mur ligase family, glutamate ligase domain THITH_14490 PF01225 Mur ligase family, catalytic domain THITH_14490 PF02875 Mur ligase family, glutamate ligase domain THITH_14490 PF08245 Mur ligase middle domain THITH_14495 PF03717 Penicillin-binding Protein dimerisation domain THITH_14495 PF00905 Penicillin binding protein transpeptidase domain THITH_14500 PF04999 Cell division protein FtsL THITH_14505 PF01795 MraW methylase family THITH_14510 PF02381 MraZ protein, putative antitoxin-like THITH_14520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THITH_14525 PF04348 LppC putative lipoprotein THITH_14530 PF02021 Uncharacterised protein family UPF0102 THITH_14535 PF01565 FAD binding domain THITH_14535 PF02913 FAD linked oxidases, C-terminal domain THITH_14540 PF04386 Stringent starvation protein B THITH_14545 PF00043 Glutathione S-transferase, C-terminal domain THITH_14545 PF02798 Glutathione S-transferase, N-terminal domain THITH_14550 PF02167 Cytochrome C1 family THITH_14555 PF00032 Cytochrome b(C-terminal)/b6/petD THITH_14555 PF00033 Cytochrome b/b6/petB THITH_14560 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THITH_14560 PF00355 Rieske [2Fe-2S] domain THITH_14565 PF01784 NIF3 (NGG1p interacting factor 3) THITH_14570 PF13180 PDZ domain THITH_14575 PF00155 Aminotransferase class I and II THITH_14580 PF00815 Histidinol dehydrogenase THITH_14585 PF00793 DAHP synthetase I family THITH_14590 PF01634 ATP phosphoribosyltransferase THITH_14595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THITH_14610 PF02470 MlaD protein THITH_14615 PF02405 Permease MlaE THITH_14620 PF00005 ABC transporter THITH_14630 PF01699 Sodium/calcium exchanger protein THITH_14635 PF00571 CBS domain THITH_14635 PF01380 SIS domain THITH_14655 PF00005 ABC transporter THITH_14655 PF12399 Branched-chain amino acid ATP-binding cassette transporter THITH_14660 PF00309 Sigma-54 factor, Activator interacting domain (AID) THITH_14660 PF04552 Sigma-54, DNA binding domain THITH_14660 PF04963 Sigma-54 factor, core binding domain THITH_14665 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THITH_14670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 THITH_14675 PF07475 HPr Serine kinase C-terminal domain THITH_14675 PF02603 HPr Serine kinase N terminus THITH_14680 PF03668 P-loop ATPase protein family THITH_14690 PF00381 PTS HPr component phosphorylation site THITH_14705 PF00085 Thioredoxin THITH_14715 PF02441 Flavoprotein THITH_14720 PF01225 Mur ligase family, catalytic domain THITH_14720 PF02875 Mur ligase family, glutamate ligase domain THITH_14720 PF08245 Mur ligase middle domain THITH_14730 PF04333 MlaA lipoprotein THITH_14735 PF00764 Arginosuccinate synthase THITH_14740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THITH_14740 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_14745 PF02817 e3 binding domain THITH_14745 PF00364 Biotin-requiring enzyme THITH_14745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THITH_14750 PF00456 Transketolase, thiamine diphosphate binding domain THITH_14750 PF17831 Pyruvate dehydrogenase E1 component middle domain THITH_14755 PF00929 Exonuclease THITH_14760 PF00462 Glutaredoxin THITH_14765 PF01926 50S ribosome-binding GTPase THITH_14765 PF06071 Protein of unknown function (DUF933) THITH_14770 PF01195 Peptidyl-tRNA hydrolase THITH_14775 PF14693 Ribosomal protein TL5, C-terminal domain THITH_14775 PF01386 Ribosomal L25p family THITH_14780 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THITH_14780 PF14572 Phosphoribosyl synthetase-associated domain THITH_14790 PF00288 GHMP kinases N terminal domain THITH_14790 PF08544 GHMP kinases C terminal THITH_14805 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain THITH_14805 PF01488 Shikimate / quinate 5-dehydrogenase THITH_14805 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THITH_14810 PF03462 PCRF domain THITH_14810 PF00472 RF-1 domain THITH_14815 PF05175 Methyltransferase small domain THITH_14815 PF17827 PrmC N-terminal domain THITH_14825 PF00899 ThiF family THITH_14830 PF01433 Peptidase family M1 domain THITH_14830 PF11940 Domain of unknown function (DUF3458) Ig-like fold THITH_14830 PF17432 Domain of unknown function (DUF3458_C) ARM repeats THITH_14835 PF01026 TatD related DNase THITH_14840 PF01722 BolA-like protein THITH_14865 PF01202 Shikimate kinase THITH_14875 PF03958 Bacterial type II/III secretion system short domain THITH_14875 PF11741 AMIN domain THITH_14875 PF00263 Bacterial type II and III secretion system protein THITH_14875 PF07660 Secretin and TonB N terminus short domain THITH_14900 PF00912 Transglycosylase THITH_14900 PF00905 Penicillin binding protein transpeptidase domain THITH_14900 PF17092 Penicillin-binding protein OB-like domain THITH_14910 PF01208 Uroporphyrinogen decarboxylase (URO-D) THITH_14920 PF01165 Ribosomal protein S21 THITH_14925 PF01761 3-dehydroquinate synthase THITH_14930 PF01966 HD domain THITH_14930 PF13286 Phosphohydrolase-associated domain THITH_14940 PF00005 ABC transporter THITH_14945 PF01032 FecCD transport family THITH_14950 PF01497 Periplasmic binding protein THITH_14955 PF02654 Cobalamin-5-phosphate synthase THITH_14965 PF02277 Phosphoribosyltransferase THITH_14970 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase THITH_14975 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THITH_14975 PF07685 CobB/CobQ-like glutamine amidotransferase domain THITH_14980 PF00155 Aminotransferase class I and II THITH_14985 PF03186 CobD/Cbib protein THITH_14985 PF17113 Regulatory signalling modulator protein AmpE THITH_14990 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP THITH_14990 PF12557 Cob(I)alamin adenosyltransferase N terminal THITH_14995 PF07715 TonB-dependent Receptor Plug Domain THITH_14995 PF00593 TonB dependent receptor THITH_15000 PF10410 DnaB-helicase binding domain of primase THITH_15000 PF01807 CHC2 zinc finger THITH_15000 PF08275 DNA primase catalytic core, N-terminal domain THITH_15000 PF13662 Toprim domain THITH_15000 PF08278 DNA primase DnaG DnaB-binding THITH_15005 PF04539 Sigma-70 region 3 THITH_15005 PF04545 Sigma-70, region 4 THITH_15005 PF03979 Sigma-70 factor, region 1.1 THITH_15005 PF04542 Sigma-70 region 2 THITH_15005 PF00140 Sigma-70 factor, region 1.2 THITH_15005 PF04546 Sigma-70, non-essential region THITH_15065 PF05973 Phage derived protein Gp49-like (DUF891) THITH_15070 PF01381 Helix-turn-helix THITH_15120 PF18818 Metallopeptidase superfamily domain THITH_15120 PF13362 Toprim domain THITH_15120 PF08401 Domain of unknown function (DUF1738) THITH_15140 PF00589 Phage integrase family THITH_15140 PF13356 Arm DNA-binding domain THITH_15175 PF08448 PAS fold THITH_15175 PF00990 Diguanylate cyclase, GGDEF domain THITH_15185 PF01063 Amino-transferase class IV THITH_15190 PF08335 GlnD PII-uridylyltransferase THITH_15190 PF03710 Glutamate-ammonia ligase adenylyltransferase THITH_15195 PF13416 Bacterial extracellular solute-binding protein THITH_15200 PF00528 Binding-protein-dependent transport system inner membrane component THITH_15205 PF00005 ABC transporter THITH_15205 PF08402 TOBE domain THITH_15210 PF07244 Surface antigen variable number repeat THITH_15210 PF17243 POTRA domain TamA domain 1 THITH_15210 PF01103 Surface antigen THITH_15215 PF04357 TamB, inner membrane protein subunit of TAM complex THITH_15230 PF00005 ABC transporter THITH_15230 PF02687 FtsX-like permease family THITH_15230 PF12704 MacB-like periplasmic core domain THITH_15240 PF00578 AhpC/TSA family THITH_15260 PF00072 Response regulator receiver domain THITH_15260 PF00158 Sigma-54 interaction domain THITH_15260 PF02954 Bacterial regulatory protein, Fis family THITH_15265 PF00691 OmpA family THITH_15265 PF05736 OprF membrane domain THITH_15270 PF00118 TCP-1/cpn60 chaperonin family THITH_15275 PF00166 Chaperonin 10 Kd subunit THITH_15300 PF03091 CutA1 divalent ion tolerance protein THITH_15305 PF02683 Cytochrome C biogenesis protein transmembrane region THITH_15305 PF11412 Disulphide bond corrector protein DsbC THITH_15310 PF08534 Redoxin THITH_15315 PF01220 Dehydroquinase class II THITH_15320 PF00364 Biotin-requiring enzyme THITH_15325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THITH_15325 PF00289 Biotin carboxylase, N-terminal domain THITH_15325 PF02785 Biotin carboxylase C-terminal domain THITH_15340 PF01207 Dihydrouridine synthase (Dus) THITH_15345 PF02954 Bacterial regulatory protein, Fis family THITH_15355 PF01510 N-acetylmuramoyl-L-alanine amidase THITH_15385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THITH_15390 PF00920 Dehydratase family THITH_15405 PF00924 Mechanosensitive ion channel THITH_15405 PF12794 Mechanosensitive ion channel inner membrane domain 1 THITH_15405 PF12795 Mechanosensitive ion channel porin domain THITH_15410 PF03466 LysR substrate binding domain THITH_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_15420 PF00583 Acetyltransferase (GNAT) family THITH_15420 PF00696 Amino acid kinase family THITH_15430 PF16925 Tetracyclin repressor-like, C-terminal domain THITH_15430 PF00440 Bacterial regulatory proteins, tetR family THITH_15445 PF13005 zinc-finger binding domain of transposase IS66 THITH_15445 PF13817 IS66 C-terminal element THITH_15445 PF13007 Transposase C of IS166 homeodomain THITH_15445 PF03050 Transposase IS66 family THITH_15450 PF05717 IS66 Orf2 like protein THITH_15465 PF05726 Pirin C-terminal cupin domain THITH_15465 PF02678 Pirin THITH_15480 PF00690 Cation transporter/ATPase, N-terminus THITH_15480 PF00689 Cation transporting ATPase, C-terminus THITH_15490 PF03649 Uncharacterised protein family (UPF0014) THITH_15495 PF00005 ABC transporter THITH_15500 PF00909 Ammonium Transporter Family THITH_15505 PF00543 Nitrogen regulatory protein P-II THITH_15515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THITH_15520 PF02152 Dihydroneopterin aldolase THITH_15530 PF07722 Peptidase C26 THITH_15535 PF01625 Peptide methionine sulfoxide reductase THITH_15555 PF02254 TrkA-N domain THITH_15555 PF02080 TrkA-C domain THITH_15560 PF00072 Response regulator receiver domain THITH_15560 PF00158 Sigma-54 interaction domain THITH_15560 PF02954 Bacterial regulatory protein, Fis family THITH_15565 PF00989 PAS fold THITH_15565 PF00512 His Kinase A (phospho-acceptor) domain THITH_15565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_15565 PF00672 HAMP domain THITH_15575 PF01029 NusB family THITH_15575 PF01189 16S rRNA methyltransferase RsmB/F THITH_15580 PF00551 Formyl transferase THITH_15580 PF02911 Formyl transferase, C-terminal domain THITH_15585 PF01327 Polypeptide deformylase THITH_15595 PF17782 DprA winged helix domain THITH_15595 PF02481 DNA recombination-mediator protein A THITH_15600 PF04361 Protein of unknown function (DUF494) THITH_15605 PF13368 Topoisomerase C-terminal repeat THITH_15605 PF01751 Toprim domain THITH_15605 PF01131 DNA topoisomerase THITH_15610 PF01300 Telomere recombination THITH_15615 PF01218 Coproporphyrinogen III oxidase THITH_15620 PF00490 Delta-aminolevulinic acid dehydratase THITH_15625 PF18317 Shikimate 5'-dehydrogenase C-terminal domain THITH_15625 PF01488 Shikimate / quinate 5-dehydrogenase THITH_15625 PF08501 Shikimate dehydrogenase substrate binding domain THITH_15630 PF13488 Glycine zipper THITH_15630 PF00691 OmpA family THITH_15635 PF01040 UbiA prenyltransferase family THITH_15640 PF00156 Phosphoribosyl transferase domain THITH_15650 PF06968 Biotin and Thiamin Synthesis associated domain THITH_15650 PF04055 Radical SAM superfamily THITH_15655 PF00155 Aminotransferase class I and II THITH_15660 PF13686 DsrE/DsrF/DrsH-like family THITH_15665 PF00465 Iron-containing alcohol dehydrogenase THITH_15670 PF04002 RadC-like JAB domain THITH_15675 PF02441 Flavoprotein THITH_15675 PF04127 DNA / pantothenate metabolism flavoprotein THITH_15680 PF00692 dUTPase THITH_15685 PF00696 Amino acid kinase family THITH_15715 PF00114 Pilin (bacterial filament) THITH_15715 PF07963 Prokaryotic N-terminal methylation motif THITH_15720 PF00114 Pilin (bacterial filament) THITH_15720 PF07963 Prokaryotic N-terminal methylation motif THITH_15730 PF05166 YcgL domain THITH_15735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THITH_15735 PF17810 Arginine decarboxylase helical bundle domain THITH_15735 PF17944 Arginine decarboxylase C-terminal helical extension THITH_15740 PF17284 Spermidine synthase tetramerisation domain THITH_15745 PF01258 Prokaryotic dksA/traR C4-type zinc finger THITH_15750 PF00149 Calcineurin-like phosphoesterase THITH_15755 PF01636 Phosphotransferase enzyme family THITH_15760 PF00483 Nucleotidyl transferase THITH_15775 PF04542 Sigma-70 region 2 THITH_15775 PF08281 Sigma-70, region 4 THITH_15795 PF01869 BadF/BadG/BcrA/BcrD ATPase family THITH_15810 PF00583 Acetyltransferase (GNAT) family THITH_15830 PF03232 Ubiquinone biosynthesis protein COQ7 THITH_15835 PF02675 S-adenosylmethionine decarboxylase THITH_15840 PF02566 OsmC-like protein THITH_15845 PF13545 Crp-like helix-turn-helix domain THITH_15845 PF00027 Cyclic nucleotide-binding domain THITH_15850 PF00218 Indole-3-glycerol phosphate synthase THITH_15855 PF02885 Glycosyl transferase family, helical bundle domain THITH_15855 PF00591 Glycosyl transferase family, a/b domain THITH_15860 PF00117 Glutamine amidotransferase class-I THITH_15865 PF02082 Transcriptional regulator THITH_15875 PF04715 Anthranilate synthase component I, N terminal region THITH_15875 PF00425 chorismate binding enzyme THITH_15880 PF13419 Haloacid dehalogenase-like hydrolase THITH_15885 PF00834 Ribulose-phosphate 3 epimerase family THITH_15890 PF00034 Cytochrome c THITH_15900 PF05175 Methyltransferase small domain THITH_15905 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain THITH_15905 PF02222 ATP-grasp domain THITH_15910 PF00731 AIR carboxylase THITH_15915 PF01259 SAICAR synthetase THITH_15930 PF01116 Fructose-bisphosphate aldolase class-II THITH_15935 PF02887 Pyruvate kinase, alpha/beta domain THITH_15935 PF00224 Pyruvate kinase, barrel domain THITH_15940 PF00162 Phosphoglycerate kinase THITH_15945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THITH_15945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THITH_15950 PF02780 Transketolase, C-terminal domain THITH_15950 PF00456 Transketolase, thiamine diphosphate binding domain THITH_15950 PF02779 Transketolase, pyrimidine binding domain THITH_15955 PF02772 S-adenosylmethionine synthetase, central domain THITH_15955 PF02773 S-adenosylmethionine synthetase, C-terminal domain THITH_15955 PF00438 S-adenosylmethionine synthetase, N-terminal domain THITH_15960 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THITH_15960 PF05221 S-adenosyl-L-homocysteine hydrolase THITH_15965 PF02219 Methylenetetrahydrofolate reductase THITH_15970 PF04452 RNA methyltransferase THITH_15980 PF02951 Prokaryotic glutathione synthetase, N-terminal domain THITH_15980 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain THITH_15985 PF02424 ApbE family THITH_16000 PF03544 Gram-negative bacterial TonB protein C-terminal THITH_16005 PF02622 Uncharacterized ACR, COG1678 THITH_16010 PF03652 Holliday junction resolvase THITH_16015 PF00156 Phosphoribosyl transferase domain THITH_16020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THITH_16020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THITH_16025 PF01979 Amidohydrolase family THITH_16030 PF00437 Type II/IV secretion system protein THITH_16035 PF00437 Type II/IV secretion system protein THITH_16040 PF00437 Type II/IV secretion system protein THITH_16045 PF01168 Alanine racemase, N-terminal domain THITH_16050 PF14748 Pyrroline-5-carboxylate reductase dimerisation THITH_16050 PF03807 NADP oxidoreductase coenzyme F420-dependent THITH_16055 PF02325 YGGT family THITH_16075 PF13419 Haloacid dehalogenase-like hydrolase THITH_16085 PF00293 NUDIX domain THITH_16090 PF00459 Inositol monophosphatase family THITH_16115 PF13439 Glycosyltransferase Family 4 THITH_16115 PF00534 Glycosyl transferases group 1 THITH_16120 PF01641 SelR domain THITH_16125 PF00873 AcrB/AcrD/AcrF family THITH_16130 PF13533 Biotin-lipoyl like THITH_16135 PF04262 Glutamate-cysteine ligase THITH_16145 PF00196 Bacterial regulatory proteins, luxR family THITH_16145 PF00072 Response regulator receiver domain THITH_16150 PF07730 Histidine kinase THITH_16150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_16150 PF00672 HAMP domain THITH_16150 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term THITH_16160 PF08534 Redoxin THITH_16165 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal THITH_16165 PF01578 Cytochrome C assembly protein THITH_16170 PF03100 CcmE THITH_16190 PF03918 Cytochrome C biogenesis protein THITH_16195 PF08534 Redoxin THITH_16200 PF01578 Cytochrome C assembly protein THITH_16200 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal THITH_16205 PF02335 Cytochrome c552 THITH_16215 PF10518 TAT (twin-arginine translocation) pathway signal sequence THITH_16215 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_16215 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THITH_16220 PF01966 HD domain THITH_16225 PF00005 ABC transporter THITH_16225 PF12848 ABC transporter THITH_16240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THITH_16240 PF03466 LysR substrate binding domain THITH_16250 PF00459 Inositol monophosphatase family THITH_16255 PF00211 Adenylate and Guanylate cyclase catalytic domain THITH_16290 PF00583 Acetyltransferase (GNAT) family THITH_16290 PF00795 Carbon-nitrogen hydrolase THITH_16295 PF13545 Crp-like helix-turn-helix domain THITH_16295 PF00027 Cyclic nucleotide-binding domain THITH_16310 PF02310 B12 binding domain THITH_16310 PF02965 Vitamin B12 dependent methionine synthase, activation domain THITH_16310 PF02607 B12 binding domain THITH_16310 PF02574 Homocysteine S-methyltransferase THITH_16310 PF00809 Pterin binding enzyme THITH_16315 PF04377 Arginine-tRNA-protein transferase, C terminus THITH_16315 PF04376 Arginine-tRNA-protein transferase, N terminus THITH_16320 PF02773 S-adenosylmethionine synthetase, C-terminal domain THITH_16320 PF02772 S-adenosylmethionine synthetase, central domain THITH_16320 PF00438 S-adenosylmethionine synthetase, N-terminal domain THITH_16325 PF08241 Methyltransferase domain THITH_16330 PF13649 Methyltransferase domain THITH_16335 PF01808 AICARFT/IMPCHase bienzyme THITH_16335 PF02142 MGS-like domain THITH_16340 PF02843 Phosphoribosylglycinamide synthetase, C domain THITH_16340 PF02844 Phosphoribosylglycinamide synthetase, N domain THITH_16340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THITH_16345 PF00343 Carbohydrate phosphorylase THITH_16350 PF00919 Uncharacterized protein family UPF0004 THITH_16350 PF18693 TRAM domain THITH_16350 PF04055 Radical SAM superfamily THITH_16355 PF01197 Ribosomal protein L31 THITH_16365 PF03949 Malic enzyme, NAD binding domain THITH_16365 PF00390 Malic enzyme, N-terminal domain THITH_16370 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THITH_16370 PF00056 lactate/malate dehydrogenase, NAD binding domain THITH_16375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THITH_16375 PF00476 DNA polymerase family A THITH_16375 PF01367 5'-3' exonuclease, C-terminal SAM fold THITH_16375 PF09281 Taq polymerase, exonuclease THITH_16390 PF01464 Transglycosylase SLT domain THITH_16390 PF14718 Soluble lytic murein transglycosylase L domain THITH_16405 PF11756 Nitrous oxide-stimulated promoter THITH_16415 PF00072 Response regulator receiver domain THITH_16415 PF00196 Bacterial regulatory proteins, luxR family THITH_16425 PF00474 Sodium:solute symporter family THITH_16440 PF05193 Peptidase M16 inactive domain THITH_16445 PF05193 Peptidase M16 inactive domain THITH_16445 PF00675 Insulinase (Peptidase family M16) THITH_16450 PF02881 SRP54-type protein, helical bundle domain THITH_16450 PF00448 SRP54-type protein, GTPase domain THITH_16455 PF00005 ABC transporter THITH_16465 PF00140 Sigma-70 factor, region 1.2 THITH_16465 PF04542 Sigma-70 region 2 THITH_16465 PF04545 Sigma-70, region 4 THITH_16475 PF00266 Aminotransferase class-V THITH_16490 PF03597 Cytochrome oxidase maturation protein cbb3-type THITH_16495 PF00403 Heavy-metal-associated domain THITH_16505 PF12801 4Fe-4S binding domain THITH_16505 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase THITH_16505 PF13746 4Fe-4S dicluster domain THITH_16510 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP THITH_16510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THITH_16525 PF00115 Cytochrome C and Quinol oxidase polypeptide I THITH_16530 PF08241 Methyltransferase domain THITH_16535 PF12697 Alpha/beta hydrolase family THITH_16540 PF02660 Glycerol-3-phosphate acyltransferase THITH_16545 PF00814 Glycoprotease family THITH_16560 PF04380 Membrane fusogenic activity THITH_16565 PF01078 Magnesium chelatase, subunit ChlI THITH_16565 PF13335 Magnesium chelatase, subunit ChlI C-terminal THITH_16570 PF00034 Cytochrome c THITH_16585 PF01850 PIN domain THITH_16595 PF09335 SNARE associated Golgi protein THITH_16605 PF00581 Rhodanese-like domain THITH_16615 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB THITH_16620 PF01381 Helix-turn-helix THITH_16660 PF01434 Peptidase family M41 THITH_16660 PF17862 AAA+ lid domain THITH_16660 PF00004 ATPase family associated with various cellular activities (AAA) THITH_16670 PF08281 Sigma-70, region 4 THITH_16670 PF04542 Sigma-70 region 2 THITH_16680 PF00583 Acetyltransferase (GNAT) family THITH_16690 PF03795 YCII-related domain THITH_16700 PF00326 Prolyl oligopeptidase family THITH_16715 PF03773 Predicted permease THITH_16725 PF00384 Molybdopterin oxidoreductase THITH_16725 PF01568 Molydopterin dinucleotide binding domain THITH_16725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THITH_16730 PF13247 4Fe-4S dicluster domain THITH_16730 PF00037 4Fe-4S binding domain THITH_16745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THITH_16745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THITH_16750 PF00571 CBS domain THITH_16755 PF02040 Arsenical pump membrane protein THITH_16765 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ THITH_16770 PF04221 RelB antitoxin THITH_16775 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin THITH_16780 PF01850 PIN domain THITH_16810 PF00005 ABC transporter THITH_16835 PF00072 Response regulator receiver domain THITH_16835 PF02954 Bacterial regulatory protein, Fis family THITH_16835 PF00158 Sigma-54 interaction domain THITH_16845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_16845 PF00512 His Kinase A (phospho-acceptor) domain THITH_16845 PF00989 PAS fold THITH_16850 PF00141 Peroxidase THITH_16865 PF00072 Response regulator receiver domain THITH_16870 PF00990 Diguanylate cyclase, GGDEF domain THITH_16870 PF00072 Response regulator receiver domain THITH_16905 PF00563 EAL domain THITH_16905 PF03707 Bacterial signalling protein N terminal repeat THITH_16905 PF00990 Diguanylate cyclase, GGDEF domain THITH_16925 PF00625 Guanylate kinase THITH_16930 PF01192 RNA polymerase Rpb6 THITH_16935 PF04607 Region found in RelA / SpoT proteins THITH_16935 PF02824 TGS domain THITH_16935 PF13291 ACT domain THITH_16940 PF01042 Endoribonuclease L-PSP THITH_16945 PF00271 Helicase conserved C-terminal domain THITH_16945 PF17191 RecG wedge domain THITH_16945 PF00270 DEAD/DEAH box helicase THITH_16955 PF01171 PP-loop family THITH_16960 PF13932 GidA associated domain THITH_16960 PF01134 Glucose inhibited division protein A THITH_16965 PF02527 rRNA small subunit methyltransferase G THITH_16970 PF13614 AAA domain THITH_16975 PF17762 HTH domain found in ParB protein THITH_16975 PF02195 ParB-like nuclease domain THITH_16985 PF00119 ATP synthase A chain THITH_16990 PF00137 ATP synthase subunit C THITH_16995 PF00430 ATP synthase B/B' CF(0) THITH_17000 PF00213 ATP synthase delta (OSCP) subunit THITH_17005 PF02874 ATP synthase alpha/beta family, beta-barrel domain THITH_17005 PF00306 ATP synthase alpha/beta chain, C terminal domain THITH_17005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THITH_17010 PF00231 ATP synthase THITH_17015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THITH_17015 PF02874 ATP synthase alpha/beta family, beta-barrel domain THITH_17020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THITH_17020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain THITH_17025 PF00132 Bacterial transferase hexapeptide (six repeats) THITH_17025 PF14602 Hexapeptide repeat of succinyl-transferase THITH_17025 PF12804 MobA-like NTP transferase domain THITH_17030 PF01380 SIS domain THITH_17040 PF01949 Protein of unknown function DUF99 THITH_17045 PF17820 PDZ domain THITH_17045 PF13180 PDZ domain THITH_17055 PF05116 Sucrose-6F-phosphate phosphohydrolase THITH_17055 PF05166 YcgL domain THITH_17060 PF01965 DJ-1/PfpI family THITH_17065 PF13180 PDZ domain THITH_17065 PF03572 Peptidase family S41 THITH_17070 PF01551 Peptidase family M23 THITH_17080 PF00581 Rhodanese-like domain THITH_17085 PF00462 Glutaredoxin THITH_17090 PF00085 Thioredoxin THITH_17095 PF02556 Preprotein translocase subunit SecB THITH_17100 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THITH_17100 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THITH_17105 PF00588 SpoU rRNA Methylase family THITH_17110 PF00158 Sigma-54 interaction domain THITH_17110 PF02954 Bacterial regulatory protein, Fis family THITH_17110 PF00072 Response regulator receiver domain THITH_17115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_17115 PF00512 His Kinase A (phospho-acceptor) domain THITH_17115 PF00989 PAS fold THITH_17130 PF03641 Possible lysine decarboxylase THITH_17135 PF01612 3'-5' exonuclease THITH_17135 PF00476 DNA polymerase family A THITH_17135 PF01367 5'-3' exonuclease, C-terminal SAM fold THITH_17135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THITH_17145 PF02630 SCO1/SenC THITH_17155 PF01926 50S ribosome-binding GTPase THITH_17160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THITH_17165 PF01323 DSBA-like thioredoxin domain THITH_17185 PF06965 Na+/H+ antiporter 1 THITH_17185 PF13462 Thioredoxin THITH_17190 PF05231 MASE1 THITH_17190 PF07730 Histidine kinase THITH_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_17195 PF00196 Bacterial regulatory proteins, luxR family THITH_17195 PF00072 Response regulator receiver domain THITH_17200 PF00072 Response regulator receiver domain THITH_17200 PF00196 Bacterial regulatory proteins, luxR family THITH_17205 PF01627 Hpt domain THITH_17205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THITH_17205 PF00512 His Kinase A (phospho-acceptor) domain THITH_17205 PF00072 Response regulator receiver domain THITH_17205 PF00672 HAMP domain THITH_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THITH_17225 PF00294 pfkB family carbohydrate kinase THITH_17230 PF00733 Asparagine synthase THITH_17230 PF13537 Glutamine amidotransferase domain THITH_17235 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THITH_17235 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THITH_17240 PF00857 Isochorismatase family THITH_17245 PF01546 Peptidase family M20/M25/M40 THITH_17245 PF07687 Peptidase dimerisation domain THITH_17250 PF01047 MarR family THITH_17260 PF02028 BCCT, betaine/carnitine/choline family transporter THITH_17270 PF07690 Major Facilitator Superfamily THITH_17280 PF03372 Endonuclease/Exonuclease/phosphatase family THITH_17285 PF00156 Phosphoribosyl transferase domain THITH_17290 PF13667 ThiC-associated domain THITH_17290 PF01964 Radical SAM ThiC family THITH_17310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THITH_17310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THITH_17315 PF00270 DEAD/DEAH box helicase THITH_17315 PF00271 Helicase conserved C-terminal domain THITH_17315 PF03880 DbpA RNA binding domain THITH_17320 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain THITH_17325 PF00365 Phosphofructokinase THITH_17340 PF01467 Cytidylyltransferase-like THITH_17345 PF00037 4Fe-4S binding domain THITH_17365 PF00391 PEP-utilising enzyme, mobile domain THITH_17365 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THITH_17375 PF01066 CDP-alcohol phosphatidyltransferase THITH_17385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THITH_17385 PF02817 e3 binding domain THITH_17385 PF00364 Biotin-requiring enzyme THITH_17390 PF16078 2-oxoglutarate dehydrogenase N-terminus THITH_17390 PF00676 Dehydrogenase E1 component THITH_17390 PF16870 2-oxoglutarate dehydrogenase C-terminal THITH_17390 PF02779 Transketolase, pyrimidine binding domain THITH_17395 PF00580 UvrD/REP helicase N-terminal domain THITH_17395 PF13361 UvrD-like helicase C-terminal domain THITH_17420 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THITH_17420 PF07992 Pyridine nucleotide-disulphide oxidoreductase THITH_17420 PF10518 TAT (twin-arginine translocation) pathway signal sequence THITH_17425 PF00034 Cytochrome c THITH_17440 PF00561 alpha/beta hydrolase fold THITH_17445 PF02580 D-Tyr-tRNA(Tyr) deacylase THITH_17450 PF01813 ATP synthase subunit D THITH_17455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THITH_17460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THITH_17460 PF16886 ATPsynthase alpha/beta subunit N-term extension THITH_17460 PF02874 ATP synthase alpha/beta family, beta-barrel domain THITH_17465 PF01991 ATP synthase (E/31 kDa) subunit THITH_17495 PF10396 GTP-binding protein TrmE N-terminus THITH_17495 PF12631 MnmE helical domain THITH_17495 PF01926 50S ribosome-binding GTPase THITH_17500 PF02096 60Kd inner membrane protein THITH_17500 PF14849 YidC periplasmic domain THITH_17505 PF01809 Putative membrane protein insertion efficiency factor THITH_17510 PF00825 Ribonuclease P