locus-tag class description TK90_0001 PF08299 Bacterial dnaA protein helix-turn-helix TK90_0001 PF00308 Bacterial dnaA protein TK90_0001 PF11638 DnaA N-terminal domain TK90_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain TK90_0002 PF02767 DNA polymerase III beta subunit, central domain TK90_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain TK90_0003 PF02463 RecF/RecN/SMC N terminal domain TK90_0004 PF00986 DNA gyrase B subunit, carboxyl terminus TK90_0004 PF01751 Toprim domain TK90_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0004 PF18053 DNA gyrase B subunit insert domain TK90_0004 PF00204 DNA gyrase B TK90_0006 PF01432 Peptidase family M3 TK90_0007 PF03372 Endonuclease/Exonuclease/phosphatase family TK90_0008 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TK90_0010 PF00175 Oxidoreductase NAD-binding domain TK90_0010 PF00111 2Fe-2S iron-sulfur cluster binding domain TK90_0010 PF00970 Oxidoreductase FAD-binding domain TK90_0011 PF02602 Uroporphyrinogen-III synthase HemD TK90_0012 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TK90_0012 PF03900 Porphobilinogen deaminase, C-terminal domain TK90_0013 PF04397 LytTr DNA-binding domain TK90_0013 PF00072 Response regulator receiver domain TK90_0014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0014 PF06580 Histidine kinase TK90_0015 PF14698 Argininosuccinate lyase C-terminal TK90_0015 PF00206 Lyase TK90_0017 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TK90_0019 PF00916 Sulfate permease family TK90_0019 PF01740 STAS domain TK90_0021 PF07715 TonB-dependent Receptor Plug Domain TK90_0021 PF00593 TonB dependent receptor TK90_0023 PF02028 BCCT, betaine/carnitine/choline family transporter TK90_0025 PF01047 MarR family TK90_0027 PF07687 Peptidase dimerisation domain TK90_0027 PF01546 Peptidase family M20/M25/M40 TK90_0028 PF00857 Isochorismatase family TK90_0029 PF00474 Sodium:solute symporter family TK90_0031 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TK90_0031 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TK90_0032 PF00733 Asparagine synthase TK90_0032 PF13537 Glutamine amidotransferase domain TK90_0034 PF00990 Diguanylate cyclase, GGDEF domain TK90_0034 PF08448 PAS fold TK90_0036 PF00205 Thiamine pyrophosphate enzyme, central domain TK90_0036 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TK90_0036 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TK90_0037 PF01323 DSBA-like thioredoxin domain TK90_0038 PF01578 Cytochrome C assembly protein TK90_0039 PF05140 ResB-like family TK90_0040 PF00034 Cytochrome c TK90_0041 PF01926 50S ribosome-binding GTPase TK90_0042 PF02630 SCO1/SenC TK90_0044 PF01612 3'-5' exonuclease TK90_0044 PF00476 DNA polymerase family A TK90_0044 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TK90_0044 PF01367 5'-3' exonuclease, C-terminal SAM fold TK90_0045 PF03641 Possible lysine decarboxylase TK90_0049 PF00989 PAS fold TK90_0049 PF00512 His Kinase A (phospho-acceptor) domain TK90_0049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0050 PF02954 Bacterial regulatory protein, Fis family TK90_0050 PF00158 Sigma-54 interaction domain TK90_0050 PF00072 Response regulator receiver domain TK90_0051 PF01180 Dihydroorotate dehydrogenase TK90_0052 PF00588 SpoU rRNA Methylase family TK90_0054 PF00365 Phosphofructokinase TK90_0055 PF05191 Adenylate kinase, active site lid TK90_0057 PF04976 DMSO reductase anchor subunit (DmsC) TK90_0058 PF12800 4Fe-4S binding domain TK90_0058 PF13247 4Fe-4S dicluster domain TK90_0059 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TK90_0059 PF00384 Molybdopterin oxidoreductase TK90_0059 PF01568 Molydopterin dinucleotide binding domain TK90_0062 PF01747 ATP-sulfurylase TK90_0062 PF14306 PUA-like domain TK90_0064 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit TK90_0064 PF13187 4Fe-4S dicluster domain TK90_0065 PF00890 FAD binding domain TK90_0067 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TK90_0069 PF07690 Major Facilitator Superfamily TK90_0070 PF03372 Endonuclease/Exonuclease/phosphatase family TK90_0071 PF00156 Phosphoribosyl transferase domain TK90_0076 PF01609 Transposase DDE domain TK90_0076 PF05598 Transposase domain (DUF772) TK90_0077 PF01427 D-ala-D-ala dipeptidase TK90_0079 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TK90_0079 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TK90_0082 PF09828 Chromate resistance exported protein TK90_0083 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TK90_0083 PF13542 Helix-turn-helix domain of transposase family ISL3 TK90_0083 PF01610 Transposase TK90_0084 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TK90_0085 PF00365 Phosphofructokinase TK90_0091 PF01467 Cytidylyltransferase-like TK90_0092 PF00037 4Fe-4S binding domain TK90_0094 PF01649 Ribosomal protein S20 TK90_0096 PF00580 UvrD/REP helicase N-terminal domain TK90_0096 PF13361 UvrD-like helicase C-terminal domain TK90_0097 PF16078 2-oxoglutarate dehydrogenase N-terminus TK90_0097 PF16870 2-oxoglutarate dehydrogenase C-terminal TK90_0097 PF00676 Dehydrogenase E1 component TK90_0097 PF02779 Transketolase, pyrimidine binding domain TK90_0098 PF00364 Biotin-requiring enzyme TK90_0098 PF02817 e3 binding domain TK90_0098 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TK90_0100 PF00072 Response regulator receiver domain TK90_0100 PF00990 Diguanylate cyclase, GGDEF domain TK90_0101 PF03109 ABC1 family TK90_0103 PF01209 ubiE/COQ5 methyltransferase family TK90_0115 PF07724 AAA domain (Cdc48 subfamily) TK90_0115 PF00004 ATPase family associated with various cellular activities (AAA) TK90_0115 PF10431 C-terminal, D2-small domain, of ClpB protein TK90_0116 PF00227 Proteasome subunit TK90_0117 PF02899 Phage integrase, N-terminal SAM-like domain TK90_0117 PF00589 Phage integrase family TK90_0119 PF01678 Diaminopimelate epimerase TK90_0120 PF13649 Methyltransferase domain TK90_0121 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TK90_0121 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TK90_0125 PF00475 Imidazoleglycerol-phosphate dehydratase TK90_0126 PF00117 Glutamine amidotransferase class-I TK90_0127 PF00977 Histidine biosynthesis protein TK90_0128 PF00977 Histidine biosynthesis protein TK90_0129 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TK90_0130 PF02416 mttA/Hcf106 family TK90_0131 PF02416 mttA/Hcf106 family TK90_0132 PF00902 Sec-independent protein translocase protein (TatC) TK90_0133 PF01676 Metalloenzyme superfamily TK90_0133 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TK90_0135 PF00069 Protein kinase domain TK90_0135 PF03793 PASTA domain TK90_0138 PF00990 Diguanylate cyclase, GGDEF domain TK90_0140 PF01964 Radical SAM ThiC family TK90_0140 PF13667 ThiC-associated domain TK90_0141 PF01865 Protein of unknown function DUF47 TK90_0142 PF01384 Phosphate transporter family TK90_0143 PF04055 Radical SAM superfamily TK90_0143 PF06463 Molybdenum Cofactor Synthesis C TK90_0144 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TK90_0144 PF01568 Molydopterin dinucleotide binding domain TK90_0144 PF00384 Molybdopterin oxidoreductase TK90_0145 PF13247 4Fe-4S dicluster domain TK90_0145 PF12800 4Fe-4S binding domain TK90_0146 PF04976 DMSO reductase anchor subunit (DmsC) TK90_0149 PF00034 Cytochrome c TK90_0150 PF13335 Magnesium chelatase, subunit ChlI C-terminal TK90_0150 PF01078 Magnesium chelatase, subunit ChlI TK90_0151 PF04380 Membrane fusogenic activity TK90_0152 PF00106 short chain dehydrogenase TK90_0154 PF00814 Glycoprotease family TK90_0155 PF02660 Glycerol-3-phosphate acyltransferase TK90_0156 PF12697 Alpha/beta hydrolase family TK90_0157 PF08241 Methyltransferase domain TK90_0158 PF00115 Cytochrome C and Quinol oxidase polypeptide I TK90_0161 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TK90_0161 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TK90_0162 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TK90_0162 PF13746 4Fe-4S dicluster domain TK90_0162 PF12801 4Fe-4S binding domain TK90_0165 PF03597 Cytochrome oxidase maturation protein cbb3-type TK90_0167 PF04545 Sigma-70, region 4 TK90_0167 PF04542 Sigma-70 region 2 TK90_0167 PF00140 Sigma-70 factor, region 1.2 TK90_0168 PF18075 FtsX extracellular domain TK90_0169 PF00005 ABC transporter TK90_0170 PF02881 SRP54-type protein, helical bundle domain TK90_0170 PF00448 SRP54-type protein, GTPase domain TK90_0171 PF05193 Peptidase M16 inactive domain TK90_0171 PF00675 Insulinase (Peptidase family M16) TK90_0172 PF05193 Peptidase M16 inactive domain TK90_0174 PF02028 BCCT, betaine/carnitine/choline family transporter TK90_0176 PF00343 Carbohydrate phosphorylase TK90_0177 PF02844 Phosphoribosylglycinamide synthetase, N domain TK90_0177 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TK90_0177 PF02843 Phosphoribosylglycinamide synthetase, C domain TK90_0178 PF01808 AICARFT/IMPCHase bienzyme TK90_0178 PF02142 MGS-like domain TK90_0179 PF13649 Methyltransferase domain TK90_0180 PF08241 Methyltransferase domain TK90_0181 PF04377 Arginine-tRNA-protein transferase, C terminus TK90_0181 PF04376 Arginine-tRNA-protein transferase, N terminus TK90_0182 PF00809 Pterin binding enzyme TK90_0182 PF02965 Vitamin B12 dependent methionine synthase, activation domain TK90_0182 PF02607 B12 binding domain TK90_0182 PF02310 B12 binding domain TK90_0182 PF02574 Homocysteine S-methyltransferase TK90_0185 PF00696 Amino acid kinase family TK90_0187 PF00115 Cytochrome C and Quinol oxidase polypeptide I TK90_0190 PF00970 Oxidoreductase FAD-binding domain TK90_0190 PF00175 Oxidoreductase NAD-binding domain TK90_0190 PF00042 Globin TK90_0191 PF07722 Peptidase C26 TK90_0193 PF02152 Dihydroneopterin aldolase TK90_0195 PF00543 Nitrogen regulatory protein P-II TK90_0196 PF00909 Ammonium Transporter Family TK90_0197 PF00005 ABC transporter TK90_0198 PF03649 Uncharacterised protein family (UPF0014) TK90_0201 PF17284 Spermidine synthase tetramerisation domain TK90_0202 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TK90_0202 PF17810 Arginine decarboxylase helical bundle domain TK90_0202 PF17944 Arginine decarboxylase C-terminal helical extension TK90_0203 PF05166 YcgL domain TK90_0210 PF05567 Neisseria PilC beta-propeller domain TK90_0224 PF01381 Helix-turn-helix TK90_0225 PF08534 Redoxin TK90_0227 PF02445 Quinolinate synthetase A protein TK90_0233 PF00970 Oxidoreductase FAD-binding domain TK90_0233 PF00175 Oxidoreductase NAD-binding domain TK90_0236 PF10518 TAT (twin-arginine translocation) pathway signal sequence TK90_0236 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0236 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TK90_0242 PF00072 Response regulator receiver domain TK90_0242 PF00486 Transcriptional regulatory protein, C terminal TK90_0243 PF16527 Two-component sensor protein CpxA, periplasmic domain TK90_0243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0243 PF00512 His Kinase A (phospho-acceptor) domain TK90_0243 PF00672 HAMP domain TK90_0244 PF01266 FAD dependent oxidoreductase TK90_0245 PF00270 DEAD/DEAH box helicase TK90_0245 PF11898 Domain of unknown function (DUF3418) TK90_0245 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TK90_0245 PF00271 Helicase conserved C-terminal domain TK90_0245 PF04408 Helicase associated domain (HA2) TK90_0247 PF05746 DALR anticodon binding domain TK90_0247 PF03485 Arginyl tRNA synthetase N terminal domain TK90_0247 PF00750 tRNA synthetases class I (R) TK90_0248 PF18074 Primosomal protein N C-terminal domain TK90_0248 PF17764 3′ DNA-binding domain (3′BD) TK90_0248 PF00271 Helicase conserved C-terminal domain TK90_0248 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TK90_0248 PF00270 DEAD/DEAH box helicase TK90_0249 PF02233 NAD(P) transhydrogenase beta subunit TK90_0250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TK90_0251 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TK90_0251 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TK90_0253 PF00762 Ferrochelatase TK90_0254 PF02464 Competence-damaged protein TK90_0254 PF18146 Damage-inducible protein CinA KH domain TK90_0254 PF00994 Probable molybdopterin binding domain TK90_0256 PF02867 Ribonucleotide reductase, barrel domain TK90_0256 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TK90_0260 PF13276 HTH-like domain TK90_0260 PF13333 Integrase core domain TK90_0260 PF00665 Integrase core domain TK90_0263 PF00140 Sigma-70 factor, region 1.2 TK90_0263 PF04545 Sigma-70, region 4 TK90_0263 PF03979 Sigma-70 factor, region 1.1 TK90_0263 PF04546 Sigma-70, non-essential region TK90_0263 PF04539 Sigma-70 region 3 TK90_0263 PF04542 Sigma-70 region 2 TK90_0264 PF08278 DNA primase DnaG DnaB-binding TK90_0264 PF08275 DNA primase catalytic core, N-terminal domain TK90_0264 PF01807 CHC2 zinc finger TK90_0264 PF10410 DnaB-helicase binding domain of primase TK90_0264 PF13662 Toprim domain TK90_0265 PF04898 Glutamate synthase central domain TK90_0265 PF00310 Glutamine amidotransferases class-II TK90_0265 PF01645 Conserved region in glutamate synthase TK90_0265 PF01493 GXGXG motif TK90_0267 PF01966 HD domain TK90_0267 PF13286 Phosphohydrolase-associated domain TK90_0268 PF01761 3-dehydroquinate synthase TK90_0269 PF01165 Ribosomal protein S21 TK90_0271 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TK90_0271 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0272 PF01208 Uroporphyrinogen decarboxylase (URO-D) TK90_0274 PF00905 Penicillin binding protein transpeptidase domain TK90_0274 PF00912 Transglycosylase TK90_0274 PF17092 Penicillin-binding protein OB-like domain TK90_0279 PF03958 Bacterial type II/III secretion system short domain TK90_0279 PF00263 Bacterial type II and III secretion system protein TK90_0279 PF11741 AMIN domain TK90_0279 PF07660 Secretin and TonB N terminus short domain TK90_0280 PF01202 Shikimate kinase TK90_0283 PF00294 pfkB family carbohydrate kinase TK90_0284 PF00578 AhpC/TSA family TK90_0285 PF11412 Disulphide bond corrector protein DsbC TK90_0285 PF02683 Cytochrome C biogenesis protein transmembrane region TK90_0286 PF03091 CutA1 divalent ion tolerance protein TK90_0287 PF13533 Biotin-lipoyl like TK90_0290 PF04186 FxsA cytoplasmic membrane protein TK90_0291 PF00166 Chaperonin 10 Kd subunit TK90_0292 PF00118 TCP-1/cpn60 chaperonin family TK90_0293 PF01389 OmpA-like transmembrane domain TK90_0293 PF00691 OmpA family TK90_0295 PF04357 TamB, inner membrane protein subunit of TAM complex TK90_0296 PF07244 Surface antigen variable number repeat TK90_0296 PF01103 Surface antigen TK90_0296 PF17243 POTRA domain TamA domain 1 TK90_0297 PF08402 TOBE domain TK90_0297 PF00005 ABC transporter TK90_0298 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0299 PF13416 Bacterial extracellular solute-binding protein TK90_0300 PF08335 GlnD PII-uridylyltransferase TK90_0300 PF03710 Glutamate-ammonia ligase adenylyltransferase TK90_0301 PF01063 Amino-transferase class IV TK90_0303 PF01467 Cytidylyltransferase-like TK90_0303 PF00294 pfkB family carbohydrate kinase TK90_0304 PF01370 NAD dependent epimerase/dehydratase family TK90_0307 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TK90_0308 PF03279 Bacterial lipid A biosynthesis acyltransferase TK90_0310 PF00005 ABC transporter TK90_0310 PF00664 ABC transporter transmembrane region TK90_0311 PF00535 Glycosyl transferase family 2 TK90_0312 PF13439 Glycosyltransferase Family 4 TK90_0312 PF00534 Glycosyl transferases group 1 TK90_0313 PF00534 Glycosyl transferases group 1 TK90_0313 PF13439 Glycosyltransferase Family 4 TK90_0316 PF03793 PASTA domain TK90_0316 PF00069 Protein kinase domain TK90_0319 PF00534 Glycosyl transferases group 1 TK90_0319 PF13439 Glycosyltransferase Family 4 TK90_0320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TK90_0321 PF13580 SIS domain TK90_0323 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TK90_0324 PF10263 SprT-like family TK90_0324 PF17283 SprT-like zinc ribbon domain TK90_0326 PF01612 3'-5' exonuclease TK90_0326 PF00570 HRDC domain TK90_0328 PF04093 rod shape-determining protein MreD TK90_0329 PF04085 rod shape-determining protein MreC TK90_0331 PF02686 Glu-tRNAGln amidotransferase C subunit TK90_0332 PF01425 Amidase TK90_0333 PF02637 GatB domain TK90_0333 PF02934 GatB/GatE catalytic domain TK90_0334 PF01430 Hsp33 protein TK90_0336 PF00899 ThiF family TK90_0338 PF01610 Transposase TK90_0338 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TK90_0338 PF13542 Helix-turn-helix domain of transposase family ISL3 TK90_0339 PF13847 Methyltransferase domain TK90_0339 PF17827 PrmC N-terminal domain TK90_0340 PF00472 RF-1 domain TK90_0340 PF03462 PCRF domain TK90_0341 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TK90_0341 PF01488 Shikimate / quinate 5-dehydrogenase TK90_0341 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TK90_0343 PF03550 Outer membrane lipoprotein LolB TK90_0344 PF08544 GHMP kinases C terminal TK90_0344 PF00288 GHMP kinases N terminal domain TK90_0345 PF14572 Phosphoribosyl synthetase-associated domain TK90_0345 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TK90_0346 PF14693 Ribosomal protein TL5, C-terminal domain TK90_0346 PF01386 Ribosomal L25p family TK90_0347 PF01195 Peptidyl-tRNA hydrolase TK90_0348 PF01926 50S ribosome-binding GTPase TK90_0348 PF06071 Protein of unknown function (DUF933) TK90_0349 PF00462 Glutaredoxin TK90_0350 PF00929 Exonuclease TK90_0351 PF17831 Pyruvate dehydrogenase E1 component middle domain TK90_0351 PF00456 Transketolase, thiamine diphosphate binding domain TK90_0352 PF02817 e3 binding domain TK90_0352 PF00364 Biotin-requiring enzyme TK90_0352 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TK90_0353 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TK90_0353 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0355 PF00764 Arginosuccinate synthase TK90_0356 PF05230 MASE2 domain TK90_0356 PF00990 Diguanylate cyclase, GGDEF domain TK90_0357 PF04333 MlaA lipoprotein TK90_0359 PF01225 Mur ligase family, catalytic domain TK90_0359 PF02875 Mur ligase family, glutamate ligase domain TK90_0359 PF08245 Mur ligase middle domain TK90_0360 PF02441 Flavoprotein TK90_0362 PF00085 Thioredoxin TK90_0364 PF01699 Sodium/calcium exchanger protein TK90_0365 PF01380 SIS domain TK90_0365 PF00571 CBS domain TK90_0369 PF12399 Branched-chain amino acid ATP-binding cassette transporter TK90_0369 PF00005 ABC transporter TK90_0370 PF00309 Sigma-54 factor, Activator interacting domain (AID) TK90_0370 PF04552 Sigma-54, DNA binding domain TK90_0370 PF04963 Sigma-54 factor, core binding domain TK90_0371 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TK90_0372 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TK90_0373 PF02603 HPr Serine kinase N terminus TK90_0373 PF07475 HPr Serine kinase C-terminal domain TK90_0374 PF03668 P-loop ATPase protein family TK90_0376 PF00381 PTS HPr component phosphorylation site TK90_0377 PF00155 Aminotransferase class I and II TK90_0378 PF00815 Histidinol dehydrogenase TK90_0379 PF00793 DAHP synthetase I family TK90_0380 PF01634 ATP phosphoribosyltransferase TK90_0381 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TK90_0383 PF05494 MlaC protein TK90_0384 PF02470 MlaD protein TK90_0385 PF02405 Permease MlaE TK90_0386 PF00005 ABC transporter TK90_0388 PF00296 Luciferase-like monooxygenase TK90_0389 PF16363 GDP-mannose 4,6 dehydratase TK90_0390 PF01925 Sulfite exporter TauE/SafE TK90_0391 PF00202 Aminotransferase class-III TK90_0392 PF02581 Thiamine monophosphate synthase TK90_0393 PF08543 Phosphomethylpyrimidine kinase TK90_0393 PF02581 Thiamine monophosphate synthase TK90_0396 PF00293 NUDIX domain TK90_0397 PF01590 GAF domain TK90_0397 PF05524 PEP-utilising enzyme, N-terminal TK90_0397 PF00391 PEP-utilising enzyme, mobile domain TK90_0397 PF02896 PEP-utilising enzyme, TIM barrel domain TK90_0400 PF02774 Semialdehyde dehydrogenase, dimerisation domain TK90_0400 PF01118 Semialdehyde dehydrogenase, NAD binding domain TK90_0403 PF01521 Iron-sulphur cluster biosynthesis TK90_0404 PF03702 Anhydro-N-acetylmuramic acid kinase TK90_0405 PF00579 tRNA synthetases class I (W and Y) TK90_0407 PF00872 Transposase, Mutator family TK90_0408 PF00753 Metallo-beta-lactamase superfamily TK90_0409 PF06804 NlpB/DapX lipoprotein TK90_0410 PF00701 Dihydrodipicolinate synthetase family TK90_0412 PF00578 AhpC/TSA family TK90_0413 PF13638 PIN domain TK90_0413 PF02562 PhoH-like protein TK90_0415 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TK90_0415 PF02779 Transketolase, pyrimidine binding domain TK90_0415 PF02780 Transketolase, C-terminal domain TK90_0416 PF00348 Polyprenyl synthetase TK90_0417 PF02609 Exonuclease VII small subunit TK90_0418 PF02915 Rubrerythrin TK90_0423 PF18073 Rubredoxin metal binding domain TK90_0424 PF03471 Transporter associated domain TK90_0424 PF00571 CBS domain TK90_0424 PF01595 Cyclin M transmembrane N-terminal domain TK90_0425 PF01578 Cytochrome C assembly protein TK90_0426 PF00448 SRP54-type protein, GTPase domain TK90_0426 PF02978 Signal peptide binding domain TK90_0426 PF02881 SRP54-type protein, helical bundle domain TK90_0427 PF00886 Ribosomal protein S16 TK90_0428 PF05239 PRC-barrel domain TK90_0428 PF01782 RimM N-terminal domain TK90_0429 PF01746 tRNA (Guanine-1)-methyltransferase TK90_0430 PF01245 Ribosomal protein L19 TK90_0435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0435 PF00183 Hsp90 protein TK90_0436 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TK90_0438 PF01618 MotA/TolQ/ExbB proton channel family TK90_0443 PF00210 Ferritin-like domain TK90_0445 PF07715 TonB-dependent Receptor Plug Domain TK90_0445 PF00593 TonB dependent receptor TK90_0453 PF03692 Putative zinc- or iron-chelating domain TK90_0456 PF02463 RecF/RecN/SMC N terminal domain TK90_0457 PF01513 ATP-NAD kinase TK90_0458 PF01628 HrcA protein C terminal domain TK90_0458 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TK90_0459 PF01025 GrpE TK90_0460 PF00012 Hsp70 protein TK90_0461 PF00226 DnaJ domain TK90_0461 PF01556 DnaJ C terminal domain TK90_0461 PF00684 DnaJ central domain TK90_0462 PF00990 Diguanylate cyclase, GGDEF domain TK90_0462 PF05230 MASE2 domain TK90_0464 PF04055 Radical SAM superfamily TK90_0465 PF08207 Elongation factor P (EF-P) KOW-like domain TK90_0465 PF01132 Elongation factor P (EF-P) OB domain TK90_0465 PF09285 Elongation factor P, C-terminal TK90_0466 PF00152 tRNA synthetases class II (D, K and N) TK90_0467 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family TK90_0475 PF00109 Beta-ketoacyl synthase, N-terminal domain TK90_0475 PF02801 Beta-ketoacyl synthase, C-terminal domain TK90_0479 PF07977 FabA-like domain TK90_0480 PF13193 AMP-binding enzyme C-terminal domain TK90_0480 PF00501 AMP-binding enzyme TK90_0482 PF00550 Phosphopantetheine attachment site TK90_0484 PF10458 Valyl tRNA synthetase tRNA binding arm TK90_0484 PF00133 tRNA synthetases class I (I, L, M and V) TK90_0484 PF08264 Anticodon-binding domain of tRNA TK90_0485 PF01370 NAD dependent epimerase/dehydratase family TK90_0488 PF00175 Oxidoreductase NAD-binding domain TK90_0488 PF00970 Oxidoreductase FAD-binding domain TK90_0489 PF00563 EAL domain TK90_0489 PF00990 Diguanylate cyclase, GGDEF domain TK90_0489 PF08448 PAS fold TK90_0490 PF08331 Domain of unknown function (DUF1730) TK90_0491 PF03853 YjeF-related protein N-terminus TK90_0491 PF01256 Carbohydrate kinase TK90_0492 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TK90_0493 PF11741 AMIN domain TK90_0493 PF01520 N-acetylmuramoyl-L-alanine amidase TK90_0494 PF08676 MutL C terminal dimerisation domain TK90_0494 PF01119 DNA mismatch repair protein, C-terminal domain TK90_0496 PF17209 Hfq protein TK90_0497 PF01926 50S ribosome-binding GTPase TK90_0497 PF16360 GTP-binding GTPase Middle Region TK90_0497 PF13167 GTP-binding GTPase N-terminal TK90_0498 PF01476 LysM domain TK90_0498 PF01464 Transglycosylase SLT domain TK90_0500 PF00075 RNase H TK90_0501 PF00929 Exonuclease TK90_0502 PF02080 TrkA-C domain TK90_0502 PF03600 Citrate transporter TK90_0503 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TK90_0503 PF04073 Aminoacyl-tRNA editing domain TK90_0503 PF03129 Anticodon binding domain TK90_0505 PF13533 Biotin-lipoyl like TK90_0506 PF00873 AcrB/AcrD/AcrF family TK90_0509 PF07670 Nucleoside recognition TK90_0510 PF00106 short chain dehydrogenase TK90_0514 PF02938 GAD domain TK90_0514 PF00152 tRNA synthetases class II (D, K and N) TK90_0514 PF01336 OB-fold nucleic acid binding domain TK90_0517 PF00990 Diguanylate cyclase, GGDEF domain TK90_0517 PF00563 EAL domain TK90_0517 PF03707 Bacterial signalling protein N terminal repeat TK90_0518 PF01355 High potential iron-sulfur protein TK90_0520 PF00689 Cation transporting ATPase, C-terminus TK90_0520 PF00690 Cation transporter/ATPase, N-terminus TK90_0521 PF00563 EAL domain TK90_0521 PF00990 Diguanylate cyclase, GGDEF domain TK90_0521 PF03707 Bacterial signalling protein N terminal repeat TK90_0525 PF01596 O-methyltransferase TK90_0529 PF03707 Bacterial signalling protein N terminal repeat TK90_0529 PF00563 EAL domain TK90_0529 PF00990 Diguanylate cyclase, GGDEF domain TK90_0530 PF13188 PAS domain TK90_0530 PF00563 EAL domain TK90_0530 PF00990 Diguanylate cyclase, GGDEF domain TK90_0530 PF03707 Bacterial signalling protein N terminal repeat TK90_0531 PF13396 Phospholipase_D-nuclease N-terminal TK90_0531 PF13091 PLD-like domain TK90_0532 PF03989 DNA gyrase C-terminal domain, beta-propeller TK90_0532 PF00521 DNA gyrase/topoisomerase IV, subunit A TK90_0533 PF03707 Bacterial signalling protein N terminal repeat TK90_0533 PF00990 Diguanylate cyclase, GGDEF domain TK90_0533 PF00563 EAL domain TK90_0534 PF00989 PAS fold TK90_0534 PF00512 His Kinase A (phospho-acceptor) domain TK90_0534 PF13188 PAS domain TK90_0534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0535 PF01435 Peptidase family M48 TK90_0536 PF00753 Metallo-beta-lactamase superfamily TK90_0537 PF00512 His Kinase A (phospho-acceptor) domain TK90_0537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0538 PF02954 Bacterial regulatory protein, Fis family TK90_0538 PF00072 Response regulator receiver domain TK90_0538 PF00158 Sigma-54 interaction domain TK90_0541 PF00572 Ribosomal protein L13 TK90_0542 PF00380 Ribosomal protein S9/S16 TK90_0545 PF13183 4Fe-4S dicluster domain TK90_0545 PF02754 Cysteine-rich domain TK90_0548 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TK90_0549 PF00585 C-terminal regulatory domain of Threonine dehydratase TK90_0549 PF00291 Pyridoxal-phosphate dependent enzyme TK90_0550 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TK90_0552 PF00551 Formyl transferase TK90_0553 PF00586 AIR synthase related protein, N-terminal domain TK90_0553 PF02769 AIR synthase related protein, C-terminal domain TK90_0555 PF01594 AI-2E family transporter TK90_0556 PF00308 Bacterial dnaA protein TK90_0558 PF03358 NADPH-dependent FMN reductase TK90_0559 PF03960 ArsC family TK90_0560 PF00708 Acylphosphatase TK90_0561 PF17864 RuvB AAA lid domain TK90_0561 PF05496 Holliday junction DNA helicase RuvB P-loop domain TK90_0561 PF05491 RuvB C-terminal winged helix domain TK90_0562 PF03061 Thioesterase superfamily TK90_0563 PF01618 MotA/TolQ/ExbB proton channel family TK90_0564 PF02472 Biopolymer transport protein ExbD/TolR TK90_0566 PF07676 WD40-like Beta Propeller Repeat TK90_0566 PF04052 TolB amino-terminal domain TK90_0567 PF00691 OmpA family TK90_0569 PF04055 Radical SAM superfamily TK90_0570 PF06508 Queuosine biosynthesis protein QueC TK90_0571 PF04143 Sulphur transport TK90_0572 PF05697 Bacterial trigger factor protein (TF) TK90_0572 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TK90_0572 PF05698 Bacterial trigger factor protein (TF) C-terminus TK90_0573 PF00574 Clp protease TK90_0574 PF10431 C-terminal, D2-small domain, of ClpB protein TK90_0574 PF06689 ClpX C4-type zinc finger TK90_0574 PF07724 AAA domain (Cdc48 subfamily) TK90_0575 PF02190 ATP-dependent protease La (LON) substrate-binding domain TK90_0575 PF00004 ATPase family associated with various cellular activities (AAA) TK90_0575 PF05362 Lon protease (S16) C-terminal proteolytic domain TK90_0576 PF00216 Bacterial DNA-binding protein TK90_0577 PF13677 Membrane MotB of proton-channel complex MotA/MotB TK90_0577 PF00691 OmpA family TK90_0578 PF01618 MotA/TolQ/ExbB proton channel family TK90_0580 PF08447 PAS fold TK90_0580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TK90_0582 PF04551 GcpE protein TK90_0587 PF01914 MarC family integral membrane protein TK90_0588 PF00291 Pyridoxal-phosphate dependent enzyme TK90_0590 PF05958 tRNA (Uracil-5-)-methyltransferase TK90_0591 PF01618 MotA/TolQ/ExbB proton channel family TK90_0592 PF02472 Biopolymer transport protein ExbD/TolR TK90_0594 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TK90_0595 PF03966 Trm112p-like protein TK90_0596 PF02348 Cytidylyltransferase TK90_0597 PF13145 PPIC-type PPIASE domain TK90_0599 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TK90_0600 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0601 PF12911 N-terminal TM domain of oligopeptide transport permease C TK90_0601 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0602 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TK90_0602 PF00005 ABC transporter TK90_0603 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TK90_0603 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TK90_0604 PF00990 Diguanylate cyclase, GGDEF domain TK90_0605 PF02719 Polysaccharide biosynthesis protein TK90_0607 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TK90_0609 PF02397 Bacterial sugar transferase TK90_0610 PF00534 Glycosyl transferases group 1 TK90_0610 PF13477 Glycosyl transferase 4-like TK90_0611 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TK90_0611 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TK90_0611 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TK90_0617 PF00005 ABC transporter TK90_0617 PF00664 ABC transporter transmembrane region TK90_0618 PF01370 NAD dependent epimerase/dehydratase family TK90_0619 PF10531 SLBB domain TK90_0619 PF18412 Outer-membrane lipoprotein Wza C-terminal domain TK90_0619 PF02563 Polysaccharide biosynthesis/export protein TK90_0620 PF01451 Low molecular weight phosphotyrosine protein phosphatase TK90_0621 PF13807 G-rich domain on putative tyrosine kinase TK90_0621 PF02706 Chain length determinant protein TK90_0621 PF13614 AAA domain TK90_0622 PF06082 Exopolysaccharide biosynthesis protein YbjH TK90_0628 PF01435 Peptidase family M48 TK90_0630 PF00581 Rhodanese-like domain TK90_0631 PF01206 Sulfurtransferase TusA TK90_0634 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0634 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TK90_0637 PF02754 Cysteine-rich domain TK90_0638 PF01597 Glycine cleavage H-protein TK90_0640 PF01597 Glycine cleavage H-protein TK90_0642 PF03099 Biotin/lipoate A/B protein ligase family TK90_0642 PF10437 Bacterial lipoate protein ligase C-terminus TK90_0644 PF06968 Biotin and Thiamin Synthesis associated domain TK90_0644 PF04055 Radical SAM superfamily TK90_0651 PF07728 AAA domain (dynein-related subfamily) TK90_0651 PF08406 CbbQ/NirQ/NorQ C-terminal TK90_0653 PF00850 Histone deacetylase domain TK90_0656 PF01926 50S ribosome-binding GTPase TK90_0656 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TK90_0658 PF00004 ATPase family associated with various cellular activities (AAA) TK90_0658 PF12002 MgsA AAA+ ATPase C terminal TK90_0658 PF16193 AAA C-terminal domain TK90_0660 PF00535 Glycosyl transferase family 2 TK90_0664 PF08376 Nitrate and nitrite sensing TK90_0664 PF03861 ANTAR domain TK90_0666 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0667 PF00005 ABC transporter TK90_0668 PF04324 BFD-like [2Fe-2S] binding domain TK90_0668 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TK90_0668 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TK90_0668 PF18267 Rubredoxin NAD+ reductase C-terminal domain TK90_0668 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0669 PF00355 Rieske [2Fe-2S] domain TK90_0670 PF04324 BFD-like [2Fe-2S] binding domain TK90_0670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TK90_0670 PF00384 Molybdopterin oxidoreductase TK90_0670 PF01568 Molydopterin dinucleotide binding domain TK90_0671 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_0671 PF14824 Sirohaem biosynthesis protein central TK90_0671 PF10414 Sirohaem synthase dimerisation region TK90_0673 PF00501 AMP-binding enzyme TK90_0676 PF09190 DALR domain TK90_0676 PF01406 tRNA synthetases class I (C) catalytic domain TK90_0677 PF01502 Phosphoribosyl-AMP cyclohydrolase TK90_0678 PF01590 GAF domain TK90_0678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0678 PF00512 His Kinase A (phospho-acceptor) domain TK90_0678 PF08446 PAS fold TK90_0678 PF00360 Phytochrome region TK90_0679 PF00072 Response regulator receiver domain TK90_0680 PF03707 Bacterial signalling protein N terminal repeat TK90_0680 PF00990 Diguanylate cyclase, GGDEF domain TK90_0680 PF00563 EAL domain TK90_0682 PF01925 Sulfite exporter TauE/SafE TK90_0683 PF07683 Cobalamin synthesis protein cobW C-terminal domain TK90_0683 PF02492 CobW/HypB/UreG, nucleotide-binding domain TK90_0685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TK90_0688 PF10672 S-adenosylmethionine-dependent methyltransferase TK90_0688 PF02926 THUMP domain TK90_0688 PF01170 Putative RNA methylase family UPF0020 TK90_0689 PF01061 ABC-2 type transporter TK90_0690 PF00005 ABC transporter TK90_0693 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TK90_0693 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TK90_0695 PF00497 Bacterial extracellular solute-binding proteins, family 3 TK90_0695 PF01464 Transglycosylase SLT domain TK90_0698 PF00117 Glutamine amidotransferase class-I TK90_0698 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TK90_0699 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TK90_0699 PF02142 MGS-like domain TK90_0699 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TK90_0700 PF03449 Transcription elongation factor, N-terminal TK90_0700 PF01272 Transcription elongation factor, GreA/GreB, C-term TK90_0701 PF01985 CRS1 / YhbY (CRM) domain TK90_0702 PF01728 FtsJ-like methyltransferase TK90_0703 PF06480 FtsH Extracellular TK90_0703 PF17862 AAA+ lid domain TK90_0703 PF00004 ATPase family associated with various cellular activities (AAA) TK90_0703 PF01434 Peptidase family M41 TK90_0704 PF00809 Pterin binding enzyme TK90_0705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TK90_0705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TK90_0705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TK90_0705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TK90_0706 PF00121 Triosephosphate isomerase TK90_0707 PF03840 Preprotein translocase SecG subunit TK90_0708 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TK90_0709 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TK90_0710 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TK90_0711 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TK90_0713 PF10531 SLBB domain TK90_0713 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TK90_0713 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TK90_0714 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TK90_0714 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TK90_0714 PF00384 Molybdopterin oxidoreductase TK90_0715 PF00146 NADH dehydrogenase TK90_0716 PF12838 4Fe-4S dicluster domain TK90_0717 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TK90_0718 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TK90_0719 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TK90_0719 PF00361 Proton-conducting membrane transporter TK90_0720 PF00361 Proton-conducting membrane transporter TK90_0721 PF00361 Proton-conducting membrane transporter TK90_0723 PF02576 RimP N-terminal domain TK90_0723 PF17384 RimP C-terminal SH3 domain TK90_0724 PF13184 NusA-like KH domain TK90_0724 PF08529 NusA N-terminal domain TK90_0725 PF04760 Translation initiation factor IF-2, N-terminal region TK90_0725 PF03144 Elongation factor Tu domain 2 TK90_0725 PF00009 Elongation factor Tu GTP binding domain TK90_0725 PF08364 Bacterial translation initiation factor IF-2 associated region TK90_0725 PF11987 Translation-initiation factor 2 TK90_0726 PF02033 Ribosome-binding factor A TK90_0727 PF16198 tRNA pseudouridylate synthase B C-terminal domain TK90_0727 PF09157 Pseudouridine synthase II TruB, C-terminal TK90_0727 PF01509 TruB family pseudouridylate synthase (N terminal domain) TK90_0728 PF00312 Ribosomal protein S15 TK90_0729 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TK90_0729 PF00013 KH domain TK90_0729 PF03725 3' exoribonuclease family, domain 2 TK90_0729 PF01138 3' exoribonuclease family, domain 1 TK90_0729 PF00575 S1 RNA binding domain TK90_0730 PF08241 Methyltransferase domain TK90_0731 PF00334 Nucleoside diphosphate kinase TK90_0732 PF04055 Radical SAM superfamily TK90_0735 PF03129 Anticodon binding domain TK90_0735 PF13393 Histidyl-tRNA synthetase TK90_0737 PF01011 PQQ enzyme repeat TK90_0737 PF13360 PQQ-like domain TK90_0738 PF01926 50S ribosome-binding GTPase TK90_0738 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TK90_0739 PF00155 Aminotransferase class I and II TK90_0741 PF00209 Sodium:neurotransmitter symporter family TK90_0742 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TK90_0742 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TK90_0742 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TK90_0742 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TK90_0744 PF07977 FabA-like domain TK90_0749 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TK90_0753 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TK90_0754 PF03334 Na+/H+ antiporter subunit TK90_0757 PF00581 Rhodanese-like domain TK90_0757 PF00753 Metallo-beta-lactamase superfamily TK90_0761 PF02698 DUF218 domain TK90_0764 PF03631 Virulence factor BrkB TK90_0765 PF04264 YceI-like domain TK90_0767 PF00107 Zinc-binding dehydrogenase TK90_0767 PF08240 Alcohol dehydrogenase GroES-like domain TK90_0769 PF00534 Glycosyl transferases group 1 TK90_0769 PF13439 Glycosyltransferase Family 4 TK90_0776 PF13686 DsrE/DsrF/DrsH-like family TK90_0782 PF01812 5-formyltetrahydrofolate cyclo-ligase family TK90_0784 PF00488 MutS domain V TK90_0784 PF01713 Smr domain TK90_0787 PF13545 Crp-like helix-turn-helix domain TK90_0787 PF00027 Cyclic nucleotide-binding domain TK90_0790 PF07715 TonB-dependent Receptor Plug Domain TK90_0790 PF00593 TonB dependent receptor TK90_0791 PF01923 Cobalamin adenosyltransferase TK90_0792 PF02514 CobN/Magnesium Chelatase TK90_0795 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TK90_0795 PF12557 Cob(I)alamin adenosyltransferase N terminal TK90_0796 PF07685 CobB/CobQ-like glutamine amidotransferase domain TK90_0796 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TK90_0797 PF14824 Sirohaem biosynthesis protein central TK90_0797 PF10414 Sirohaem synthase dimerisation region TK90_0797 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_0798 PF01888 CbiD TK90_0799 PF00005 ABC transporter TK90_0800 PF01061 ABC-2 type transporter TK90_0801 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TK90_0802 PF02570 Precorrin-8X methylmutase TK90_0803 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_0804 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_0805 PF02571 Precorrin-6x reductase CbiJ/CobK TK90_0806 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_0808 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_0812 PF00034 Cytochrome c TK90_0812 PF03150 Di-haem cytochrome c peroxidase TK90_0814 PF00749 tRNA synthetases class I (E and Q), catalytic domain TK90_0816 PF00211 Adenylate and Guanylate cyclase catalytic domain TK90_0816 PF13191 AAA ATPase domain TK90_0820 PF03441 FAD binding domain of DNA photolyase TK90_0820 PF00875 DNA photolyase TK90_0821 PF04244 Deoxyribodipyrimidine photo-lyase-related protein TK90_0822 PF13411 MerR HTH family regulatory protein TK90_0823 PF03190 Protein of unknown function, DUF255 TK90_0824 PF00665 Integrase core domain TK90_0824 PF13333 Integrase core domain TK90_0824 PF13276 HTH-like domain TK90_0826 PF00459 Inositol monophosphatase family TK90_0827 PF00588 SpoU rRNA Methylase family TK90_0828 PF00132 Bacterial transferase hexapeptide (six repeats) TK90_0829 PF02082 Transcriptional regulator TK90_0830 PF00266 Aminotransferase class-V TK90_0831 PF01592 NifU-like N terminal domain TK90_0832 PF01521 Iron-sulphur cluster biosynthesis TK90_0833 PF07743 HSCB C-terminal oligomerisation domain TK90_0834 PF00012 Hsp70 protein TK90_0835 PF00111 2Fe-2S iron-sulfur cluster binding domain TK90_0836 PF04384 Iron-sulphur cluster assembly TK90_0837 PF00664 ABC transporter transmembrane region TK90_0837 PF00005 ABC transporter TK90_0838 PF00990 Diguanylate cyclase, GGDEF domain TK90_0839 PF00570 HRDC domain TK90_0839 PF00271 Helicase conserved C-terminal domain TK90_0839 PF09382 RQC domain TK90_0839 PF00270 DEAD/DEAH box helicase TK90_0839 PF16124 RecQ zinc-binding TK90_0843 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin TK90_0848 PF00158 Sigma-54 interaction domain TK90_0848 PF00072 Response regulator receiver domain TK90_0848 PF02954 Bacterial regulatory protein, Fis family TK90_0849 PF08447 PAS fold TK90_0849 PF00512 His Kinase A (phospho-acceptor) domain TK90_0849 PF00989 PAS fold TK90_0849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0851 PF00749 tRNA synthetases class I (E and Q), catalytic domain TK90_0852 PF01258 Prokaryotic dksA/traR C4-type zinc finger TK90_0853 PF13419 Haloacid dehalogenase-like hydrolase TK90_0856 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TK90_0857 PF00873 AcrB/AcrD/AcrF family TK90_0858 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain TK90_0858 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain TK90_0859 PF00101 Ribulose bisphosphate carboxylase, small chain TK90_0867 PF00210 Ferritin-like domain TK90_0869 PF13614 AAA domain TK90_0871 PF07728 AAA domain (dynein-related subfamily) TK90_0871 PF08406 CbbQ/NirQ/NorQ C-terminal TK90_0873 PF03466 LysR substrate binding domain TK90_0873 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_0877 PF12848 ABC transporter TK90_0877 PF00005 ABC transporter TK90_0879 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) TK90_0881 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TK90_0881 PF00361 Proton-conducting membrane transporter TK90_0881 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus TK90_0882 PF00872 Transposase, Mutator family TK90_0883 PF00690 Cation transporter/ATPase, N-terminus TK90_0883 PF00689 Cation transporting ATPase, C-terminus TK90_0884 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TK90_0885 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TK90_0886 PF02403 Seryl-tRNA synthetase N-terminal domain TK90_0886 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TK90_0889 PF01491 Frataxin-like domain TK90_0890 PF04241 Protein of unknown function (DUF423) TK90_0893 PF04445 Putative SAM-dependent methyltransferase TK90_0895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TK90_0895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TK90_0896 PF01027 Inhibitor of apoptosis-promoting Bax1 TK90_0897 PF01740 STAS domain TK90_0897 PF00916 Sulfate permease family TK90_0900 PF04298 Putative neutral zinc metallopeptidase TK90_0901 PF00924 Mechanosensitive ion channel TK90_0902 PF00912 Transglycosylase TK90_0906 PF13091 PLD-like domain TK90_0907 PF14437 MafB19-like deaminase TK90_0909 PF01636 Phosphotransferase enzyme family TK90_0910 PF09335 SNARE associated Golgi protein TK90_0912 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TK90_0912 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TK90_0912 PF03129 Anticodon binding domain TK90_0912 PF02824 TGS domain TK90_0913 PF05198 Translation initiation factor IF-3, N-terminal domain TK90_0913 PF00707 Translation initiation factor IF-3, C-terminal domain TK90_0914 PF01632 Ribosomal protein L35 TK90_0915 PF00453 Ribosomal protein L20 TK90_0916 PF01409 tRNA synthetases class II core domain (F) TK90_0916 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TK90_0917 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TK90_0917 PF01588 Putative tRNA binding domain TK90_0917 PF03147 Ferredoxin-fold anticodon binding domain TK90_0917 PF03484 tRNA synthetase B5 domain TK90_0917 PF03483 B3/4 domain TK90_0918 PF00216 Bacterial DNA-binding protein TK90_0920 PF07238 PilZ domain TK90_0920 PF07317 Flagellar regulator YcgR TK90_0924 PF01584 CheW-like domain TK90_0924 PF00072 Response regulator receiver domain TK90_0925 PF01739 CheR methyltransferase, SAM binding domain TK90_0925 PF03705 CheR methyltransferase, all-alpha domain TK90_0926 PF00460 Flagella basal body rod protein TK90_0927 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TK90_0927 PF00460 Flagella basal body rod protein TK90_0928 PF13861 FlgD Tudor-like domain TK90_0928 PF03963 Flagellar hook capping protein - N-terminal region TK90_0928 PF13860 FlgD Ig-like domain TK90_0929 PF07559 Flagellar basal body protein FlaE TK90_0929 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TK90_0929 PF00460 Flagella basal body rod protein TK90_0930 PF00460 Flagella basal body rod protein TK90_0930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TK90_0931 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TK90_0931 PF00460 Flagella basal body rod protein TK90_0932 PF02107 Flagellar L-ring protein TK90_0933 PF02119 Flagellar P-ring protein TK90_0934 PF10135 Rod binding protein TK90_0934 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TK90_0935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TK90_0935 PF07196 Flagellin hook IN motif TK90_0936 PF00669 Bacterial flagellin N-terminal helical region TK90_0941 PF10017 Histidine-specific methyltransferase, SAM-dependent TK90_0942 PF00300 Histidine phosphatase superfamily (branch 1) TK90_0943 PF02541 Ppx/GppA phosphatase family TK90_0944 PF13089 Polyphosphate kinase N-terminal domain TK90_0944 PF17941 Polyphosphate kinase C-terminal domain 1 TK90_0944 PF13090 Polyphosphate kinase C-terminal domain 2 TK90_0944 PF02503 Polyphosphate kinase middle domain TK90_0945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TK90_0945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TK90_0946 PF00202 Aminotransferase class-III TK90_0947 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TK90_0947 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TK90_0948 PF00939 Sodium:sulfate symporter transmembrane region TK90_0949 PF00672 HAMP domain TK90_0949 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TK90_0953 PF01895 PhoU domain TK90_0954 PF00005 ABC transporter TK90_0955 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0956 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0957 PF12849 PBP superfamily domain TK90_0958 PF11808 Phosphate regulon sensor protein PhoR TK90_0958 PF00989 PAS fold TK90_0958 PF00512 His Kinase A (phospho-acceptor) domain TK90_0958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0959 PF00486 Transcriptional regulatory protein, C terminal TK90_0959 PF00072 Response regulator receiver domain TK90_0961 PF02560 Cyanate lyase C-terminal domain TK90_0962 PF00005 ABC transporter TK90_0963 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0965 PF01590 GAF domain TK90_0965 PF02954 Bacterial regulatory protein, Fis family TK90_0965 PF00158 Sigma-54 interaction domain TK90_0966 PF00528 Binding-protein-dependent transport system inner membrane component TK90_0968 PF00005 ABC transporter TK90_0972 PF18113 Rubredoxin binding C-terminal domain TK90_0972 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_0975 PF01551 Peptidase family M23 TK90_0975 PF01464 Transglycosylase SLT domain TK90_0975 PF10145 Phage-related minor tail protein TK90_0976 PF02237 Biotin protein ligase C terminal domain TK90_0976 PF03099 Biotin/lipoate A/B protein ligase family TK90_0976 PF03309 Type III pantothenate kinase TK90_0977 PF03309 Type III pantothenate kinase TK90_0981 PF00872 Transposase, Mutator family TK90_0983 PF01336 OB-fold nucleic acid binding domain TK90_0983 PF00152 tRNA synthetases class II (D, K and N) TK90_0985 PF00916 Sulfate permease family TK90_0985 PF01740 STAS domain TK90_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_0987 PF00512 His Kinase A (phospho-acceptor) domain TK90_0988 PF00158 Sigma-54 interaction domain TK90_0988 PF00072 Response regulator receiver domain TK90_0988 PF02954 Bacterial regulatory protein, Fis family TK90_0989 PF07995 Glucose / Sorbosone dehydrogenase TK90_0995 PF00285 Citrate synthase, C-terminal domain TK90_0996 PF07694 5TMR of 5TMR-LYT TK90_0996 PF00990 Diguanylate cyclase, GGDEF domain TK90_0997 PF01565 FAD binding domain TK90_0997 PF02913 FAD linked oxidases, C-terminal domain TK90_0999 PF00361 Proton-conducting membrane transporter TK90_1000 PF00361 Proton-conducting membrane transporter TK90_1001 PF00361 Proton-conducting membrane transporter TK90_1004 PF03334 Na+/H+ antiporter subunit TK90_1011 PF04030 D-arabinono-1,4-lactone oxidase TK90_1011 PF01565 FAD binding domain TK90_1012 PF03706 Lysylphosphatidylglycerol synthase TM region TK90_1012 PF09924 Uncharacterised conserved protein (DUF2156) TK90_1013 PF01040 UbiA prenyltransferase family TK90_1017 PF00072 Response regulator receiver domain TK90_1017 PF00158 Sigma-54 interaction domain TK90_1017 PF02954 Bacterial regulatory protein, Fis family TK90_1023 PF00037 4Fe-4S binding domain TK90_1023 PF11953 Domain of unknown function (DUF3470) TK90_1024 PF02151 UvrB/uvrC motif TK90_1024 PF08459 UvrC Helix-hairpin-helix N-terminal TK90_1024 PF01541 GIY-YIG catalytic domain TK90_1026 PF08448 PAS fold TK90_1026 PF00990 Diguanylate cyclase, GGDEF domain TK90_1026 PF00563 EAL domain TK90_1027 PF00563 EAL domain TK90_1027 PF00990 Diguanylate cyclase, GGDEF domain TK90_1027 PF03707 Bacterial signalling protein N terminal repeat TK90_1028 PF00270 DEAD/DEAH box helicase TK90_1028 PF00271 Helicase conserved C-terminal domain TK90_1029 PF00672 HAMP domain TK90_1029 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TK90_1030 PF03960 ArsC family TK90_1031 PF00132 Bacterial transferase hexapeptide (six repeats) TK90_1031 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TK90_1031 PF14602 Hexapeptide repeat of succinyl-transferase TK90_1032 PF00155 Aminotransferase class I and II TK90_1035 PF00581 Rhodanese-like domain TK90_1040 PF00535 Glycosyl transferase family 2 TK90_1041 PF00581 Rhodanese-like domain TK90_1043 PF00753 Metallo-beta-lactamase superfamily TK90_1045 PF00293 NUDIX domain TK90_1045 PF13344 Haloacid dehalogenase-like hydrolase TK90_1046 PF00270 DEAD/DEAH box helicase TK90_1046 PF03880 DbpA RNA binding domain TK90_1046 PF00271 Helicase conserved C-terminal domain TK90_1047 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TK90_1050 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TK90_1052 PF04607 Region found in RelA / SpoT proteins TK90_1052 PF13291 ACT domain TK90_1052 PF02824 TGS domain TK90_1053 PF12146 Serine aminopeptidase, S33 TK90_1055 PF01209 ubiE/COQ5 methyltransferase family TK90_1056 PF02594 Uncharacterised ACR, YggU family COG1872 TK90_1057 PF01979 Amidohydrolase family TK90_1059 PF01661 Macro domain TK90_1060 PF04055 Radical SAM superfamily TK90_1064 PF02082 Transcriptional regulator TK90_1065 PF02673 Bacitracin resistance protein BacA TK90_1067 PF00005 ABC transporter TK90_1068 PF13472 GDSL-like Lipase/Acylhydrolase family TK90_1071 PF00691 OmpA family TK90_1071 PF13677 Membrane MotB of proton-channel complex MotA/MotB TK90_1072 PF01618 MotA/TolQ/ExbB proton channel family TK90_1073 PF04011 LemA family TK90_1074 PF01435 Peptidase family M48 TK90_1075 PF00990 Diguanylate cyclase, GGDEF domain TK90_1075 PF08447 PAS fold TK90_1075 PF08448 PAS fold TK90_1075 PF00563 EAL domain TK90_1076 PF05430 S-adenosyl-L-methionine-dependent methyltransferase TK90_1076 PF01266 FAD dependent oxidoreductase TK90_1077 PF01551 Peptidase family M23 TK90_1077 PF08525 Opacity-associated protein A N-terminal motif TK90_1077 PF01476 LysM domain TK90_1078 PF01061 ABC-2 type transporter TK90_1079 PF00005 ABC transporter TK90_1080 PF00883 Cytosol aminopeptidase family, catalytic domain TK90_1080 PF02789 Cytosol aminopeptidase family, N-terminal domain TK90_1081 PF02633 Creatinine amidohydrolase TK90_1086 PF03922 OmpW family TK90_1088 PF07556 Protein of unknown function (DUF1538) TK90_1091 PF08448 PAS fold TK90_1091 PF00990 Diguanylate cyclase, GGDEF domain TK90_1093 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TK90_1093 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TK90_1093 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TK90_1093 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TK90_1094 PF01050 Mannose-6-phosphate isomerase TK90_1094 PF00483 Nucleotidyl transferase TK90_1095 PF01336 OB-fold nucleic acid binding domain TK90_1095 PF07733 Bacterial DNA polymerase III alpha NTPase domain TK90_1095 PF02811 PHP domain TK90_1095 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TK90_1095 PF14579 Helix-hairpin-helix motif TK90_1097 PF13276 HTH-like domain TK90_1097 PF13333 Integrase core domain TK90_1097 PF00665 Integrase core domain TK90_1105 PF01381 Helix-turn-helix TK90_1107 PF02586 SOS response associated peptidase (SRAP) TK90_1110 PF05598 Transposase domain (DUF772) TK90_1110 PF01609 Transposase DDE domain TK90_1119 PF00072 Response regulator receiver domain TK90_1119 PF00990 Diguanylate cyclase, GGDEF domain TK90_1120 PF01434 Peptidase family M41 TK90_1120 PF06480 FtsH Extracellular TK90_1120 PF17862 AAA+ lid domain TK90_1120 PF00004 ATPase family associated with various cellular activities (AAA) TK90_1130 PF00872 Transposase, Mutator family TK90_1137 PF01527 Transposase TK90_1138 PF13683 Integrase core domain TK90_1138 PF13276 HTH-like domain TK90_1143 PF12167 Arm DNA-binding domain TK90_1143 PF00589 Phage integrase family TK90_1146 PF13091 PLD-like domain TK90_1148 PF06271 RDD family TK90_1149 PF00274 Fructose-bisphosphate aldolase class-I TK90_1150 PF02872 5'-nucleotidase, C-terminal domain TK90_1150 PF00149 Calcineurin-like phosphoesterase TK90_1151 PF18125 RlmM ferredoxin-like domain TK90_1151 PF01728 FtsJ-like methyltransferase TK90_1152 PF01894 Uncharacterised protein family UPF0047 TK90_1153 PF02769 AIR synthase related protein, C-terminal domain TK90_1153 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TK90_1153 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal TK90_1155 PF01590 GAF domain TK90_1155 PF00158 Sigma-54 interaction domain TK90_1156 PF02954 Bacterial regulatory protein, Fis family TK90_1156 PF00158 Sigma-54 interaction domain TK90_1157 PF02049 Flagellar hook-basal body complex protein FliE TK90_1158 PF01514 Secretory protein of YscJ/FliF family TK90_1158 PF08345 Flagellar M-ring protein C-terminal TK90_1159 PF14842 FliG N-terminal domain TK90_1159 PF14841 FliG middle domain TK90_1159 PF01706 FliG C-terminal domain TK90_1161 PF18269 T3SS EscN ATPase C-terminal domain TK90_1161 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TK90_1163 PF02120 Flagellar hook-length control protein FliK TK90_1165 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TK90_1165 PF02154 Flagellar motor switch protein FliM TK90_1166 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TK90_1167 PF04347 Flagellar biosynthesis protein, FliO TK90_1168 PF00813 FliP family TK90_1169 PF01313 Bacterial export proteins, family 3 TK90_1170 PF01311 Bacterial export proteins, family 1 TK90_1171 PF01312 FlhB HrpN YscU SpaS Family TK90_1172 PF00771 FHIPEP family TK90_1173 PF00448 SRP54-type protein, GTPase domain TK90_1174 PF10609 NUBPL iron-transfer P-loop NTPase TK90_1175 PF04542 Sigma-70 region 2 TK90_1175 PF04539 Sigma-70 region 3 TK90_1175 PF04545 Sigma-70, region 4 TK90_1176 PF00072 Response regulator receiver domain TK90_1177 PF04344 Chemotaxis phosphatase, CheZ TK90_1178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_1178 PF07194 P2 response regulator binding domain TK90_1178 PF01627 Hpt domain TK90_1178 PF02895 Signal transducing histidine kinase, homodimeric domain TK90_1178 PF01584 CheW-like domain TK90_1179 PF00072 Response regulator receiver domain TK90_1179 PF01339 CheB methylesterase TK90_1180 PF01618 MotA/TolQ/ExbB proton channel family TK90_1181 PF00691 OmpA family TK90_1181 PF13677 Membrane MotB of proton-channel complex MotA/MotB TK90_1182 PF13614 AAA domain TK90_1184 PF01584 CheW-like domain TK90_1187 PF01312 FlhB HrpN YscU SpaS Family TK90_1189 PF01451 Low molecular weight phosphotyrosine protein phosphatase TK90_1190 PF12111 Polyribonucleotide phosphorylase C terminal TK90_1190 PF10150 Ribonuclease E/G family TK90_1190 PF00575 S1 RNA binding domain TK90_1191 PF01479 S4 domain TK90_1191 PF00849 RNA pseudouridylate synthase TK90_1192 PF13419 Haloacid dehalogenase-like hydrolase TK90_1193 PF01343 Peptidase family S49 TK90_1195 PF02559 CarD-like/TRCF domain TK90_1195 PF00270 DEAD/DEAH box helicase TK90_1195 PF03461 TRCF domain TK90_1195 PF00271 Helicase conserved C-terminal domain TK90_1195 PF17757 UvrB interaction domain TK90_1196 PF00795 Carbon-nitrogen hydrolase TK90_1197 PF04371 Porphyromonas-type peptidyl-arginine deiminase TK90_1199 PF12704 MacB-like periplasmic core domain TK90_1199 PF02687 FtsX-like permease family TK90_1200 PF00005 ABC transporter TK90_1202 PF00753 Metallo-beta-lactamase superfamily TK90_1202 PF03772 Competence protein TK90_1203 PF01008 Initiation factor 2 subunit family TK90_1204 PF00521 DNA gyrase/topoisomerase IV, subunit A TK90_1204 PF03989 DNA gyrase C-terminal domain, beta-propeller TK90_1205 PF00266 Aminotransferase class-V TK90_1206 PF01842 ACT domain TK90_1206 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TK90_1206 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TK90_1207 PF01817 Chorismate mutase type II TK90_1207 PF01842 ACT domain TK90_1207 PF00800 Prephenate dehydratase TK90_1208 PF00155 Aminotransferase class I and II TK90_1209 PF02153 Prephenate dehydrogenase TK90_1209 PF01842 ACT domain TK90_1210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TK90_1211 PF02224 Cytidylate kinase TK90_1212 PF00575 S1 RNA binding domain TK90_1213 PF00216 Bacterial DNA-binding protein TK90_1216 PF18073 Rubredoxin metal binding domain TK90_1217 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TK90_1218 PF10531 SLBB domain TK90_1219 PF00483 Nucleotidyl transferase TK90_1221 PF00920 Dehydratase family TK90_1223 PF00293 NUDIX domain TK90_1223 PF09297 NADH pyrophosphatase zinc ribbon domain TK90_1224 PF00596 Class II Aldolase and Adducin N-terminal domain TK90_1225 PF01322 Cytochrome C' TK90_1226 PF00034 Cytochrome c TK90_1232 PF00772 DnaB-like helicase N terminal domain TK90_1232 PF03796 DnaB-like helicase C terminal domain TK90_1242 PF02151 UvrB/uvrC motif TK90_1242 PF17757 UvrB interaction domain TK90_1242 PF04851 Type III restriction enzyme, res subunit TK90_1242 PF12344 Ultra-violet resistance protein B TK90_1242 PF00271 Helicase conserved C-terminal domain TK90_1243 PF00933 Glycosyl hydrolase family 3 N terminal domain TK90_1246 PF01048 Phosphorylase superfamily TK90_1248 PF00196 Bacterial regulatory proteins, luxR family TK90_1249 PF00202 Aminotransferase class-III TK90_1252 PF09115 DNA polymerase III, delta subunit, C terminal TK90_1253 PF02223 Thymidylate kinase TK90_1254 PF02618 YceG-like family TK90_1255 PF01063 Amino-transferase class IV TK90_1256 PF04715 Anthranilate synthase component I, N terminal region TK90_1256 PF00425 chorismate binding enzyme TK90_1257 PF02801 Beta-ketoacyl synthase, C-terminal domain TK90_1257 PF00109 Beta-ketoacyl synthase, N-terminal domain TK90_1258 PF00550 Phosphopantetheine attachment site TK90_1260 PF00698 Acyl transferase domain TK90_1261 PF01176 Translation initiation factor 1A / IF-1 TK90_1262 PF10431 C-terminal, D2-small domain, of ClpB protein TK90_1262 PF00004 ATPase family associated with various cellular activities (AAA) TK90_1262 PF07724 AAA domain (Cdc48 subfamily) TK90_1262 PF17871 AAA lid domain TK90_1262 PF02861 Clp amino terminal domain, pathogenicity island component TK90_1263 PF02617 ATP-dependent Clp protease adaptor protein ClpS TK90_1264 PF00180 Isocitrate/isopropylmalate dehydrogenase TK90_1265 PF00293 NUDIX domain TK90_1267 PF04356 Protein of unknown function (DUF489) TK90_1268 PF00330 Aconitase family (aconitate hydratase) TK90_1268 PF00694 Aconitase C-terminal domain TK90_1271 PF03707 Bacterial signalling protein N terminal repeat TK90_1271 PF00990 Diguanylate cyclase, GGDEF domain TK90_1271 PF00563 EAL domain TK90_1272 PF00206 Lyase TK90_1272 PF10415 Fumarase C C-terminus TK90_1273 PF08328 Adenylosuccinate lyase C-terminal TK90_1273 PF00206 Lyase TK90_1274 PF08007 Cupin superfamily protein TK90_1275 PF01207 Dihydrouridine synthase (Dus) TK90_1277 PF00872 Transposase, Mutator family TK90_1278 PF00925 GTP cyclohydrolase II TK90_1279 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TK90_1279 PF01872 RibD C-terminal domain TK90_1280 PF00291 Pyridoxal-phosphate dependent enzyme TK90_1281 PF03447 Homoserine dehydrogenase, NAD binding domain TK90_1281 PF01842 ACT domain TK90_1281 PF00742 Homoserine dehydrogenase TK90_1282 PF00155 Aminotransferase class I and II TK90_1283 PF04430 Protein of unknown function (DUF498/DUF598) TK90_1284 PF04539 Sigma-70 region 3 TK90_1284 PF04545 Sigma-70, region 4 TK90_1284 PF00140 Sigma-70 factor, region 1.2 TK90_1284 PF04542 Sigma-70 region 2 TK90_1285 PF01476 LysM domain TK90_1285 PF01551 Peptidase family M23 TK90_1286 PF09335 SNARE associated Golgi protein TK90_1288 PF01975 Survival protein SurE TK90_1289 PF01713 Smr domain TK90_1289 PF00488 MutS domain V TK90_1291 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TK90_1291 PF01610 Transposase TK90_1291 PF13542 Helix-turn-helix domain of transposase family ISL3 TK90_1292 PF13426 PAS domain TK90_1292 PF01740 STAS domain TK90_1293 PF01142 tRNA pseudouridine synthase D (TruD) TK90_1294 PF00814 Glycoprotease family TK90_1295 PF13307 Helicase C-terminal domain TK90_1295 PF04851 Type III restriction enzyme, res subunit TK90_1297 PF14814 Bifunctional transglycosylase second domain TK90_1297 PF00912 Transglycosylase TK90_1297 PF00905 Penicillin binding protein transpeptidase domain TK90_1300 PF00877 NlpC/P60 family TK90_1302 PF07549 SecD/SecF GG Motif TK90_1302 PF02355 Protein export membrane protein TK90_1303 PF07549 SecD/SecF GG Motif TK90_1303 PF13721 SecD export protein N-terminal TM region TK90_1303 PF02355 Protein export membrane protein TK90_1304 PF02699 Preprotein translocase subunit TK90_1305 PF01702 Queuine tRNA-ribosyltransferase TK90_1306 PF02547 Queuosine biosynthesis protein TK90_1314 PF00196 Bacterial regulatory proteins, luxR family TK90_1315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TK90_1315 PF00529 HlyD membrane-fusion protein of T1SS TK90_1316 PF00005 ABC transporter TK90_1316 PF00664 ABC transporter transmembrane region TK90_1316 PF03412 Peptidase C39 family TK90_1317 PF14437 MafB19-like deaminase TK90_1318 PF00255 Glutathione peroxidase TK90_1321 PF00005 ABC transporter TK90_1322 PF02405 Permease MlaE TK90_1323 PF17863 AAA lid domain TK90_1323 PF07726 ATPase family associated with various cellular activities (AAA) TK90_1325 PF11992 Domain of unknown function (DUF3488) TK90_1325 PF13559 Domain of unknown function (DUF4129) TK90_1325 PF01841 Transglutaminase-like superfamily TK90_1326 PF02082 Transcriptional regulator TK90_1327 PF17969 L,D-transpeptidase C-terminal domain TK90_1327 PF03734 L,D-transpeptidase catalytic domain TK90_1328 PF00156 Phosphoribosyl transferase domain TK90_1329 PF02674 Colicin V production protein TK90_1331 PF08245 Mur ligase middle domain TK90_1331 PF02875 Mur ligase family, glutamate ligase domain TK90_1332 PF01039 Carboxyl transferase domain TK90_1332 PF17848 Acetyl-coA carboxylase zinc finger domain TK90_1333 PF00290 Tryptophan synthase alpha chain TK90_1334 PF00291 Pyridoxal-phosphate dependent enzyme TK90_1336 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TK90_1337 PF01416 tRNA pseudouridine synthase TK90_1340 PF02774 Semialdehyde dehydrogenase, dimerisation domain TK90_1340 PF01118 Semialdehyde dehydrogenase, NAD binding domain TK90_1341 PF00180 Isocitrate/isopropylmalate dehydrogenase TK90_1342 PF00694 Aconitase C-terminal domain TK90_1343 PF00330 Aconitase family (aconitate hydratase) TK90_1345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_1347 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TK90_1347 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TK90_1348 PF03073 TspO/MBR family TK90_1350 PF00873 AcrB/AcrD/AcrF family TK90_1352 PF01061 ABC-2 type transporter TK90_1353 PF13732 Domain of unknown function (DUF4162) TK90_1353 PF00005 ABC transporter TK90_1356 PF08448 PAS fold TK90_1356 PF00990 Diguanylate cyclase, GGDEF domain TK90_1357 PF00296 Luciferase-like monooxygenase TK90_1358 PF00291 Pyridoxal-phosphate dependent enzyme TK90_1359 PF01258 Prokaryotic dksA/traR C4-type zinc finger TK90_1360 PF00850 Histone deacetylase domain TK90_1363 PF00173 Cytochrome b5-like Heme/Steroid binding domain TK90_1364 PF00211 Adenylate and Guanylate cyclase catalytic domain TK90_1364 PF00069 Protein kinase domain TK90_1366 PF00011 Hsp20/alpha crystallin family TK90_1369 PF01112 Asparaginase TK90_1370 PF00962 Adenosine/AMP deaminase TK90_1371 PF01425 Amidase TK90_1372 PF00990 Diguanylate cyclase, GGDEF domain TK90_1375 PF00563 EAL domain TK90_1375 PF13185 GAF domain TK90_1375 PF00990 Diguanylate cyclase, GGDEF domain TK90_1379 PF00107 Zinc-binding dehydrogenase TK90_1380 PF02568 Thiamine biosynthesis protein (ThiI) TK90_1380 PF02926 THUMP domain TK90_1381 PF08349 Protein of unknown function (DUF1722) TK90_1382 PF01734 Patatin-like phospholipase TK90_1386 PF00691 OmpA family TK90_1386 PF05736 OprF membrane domain TK90_1387 PF00990 Diguanylate cyclase, GGDEF domain TK90_1387 PF08448 PAS fold TK90_1388 PF00872 Transposase, Mutator family TK90_1391 PF05532 CsbD-like TK90_1393 PF13276 HTH-like domain TK90_1393 PF00665 Integrase core domain TK90_1393 PF13333 Integrase core domain TK90_1396 PF02652 L-lactate permease TK90_1400 PF00700 Bacterial flagellin C-terminal helical region TK90_1400 PF00669 Bacterial flagellin N-terminal helical region TK90_1402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TK90_1402 PF08447 PAS fold TK90_1402 PF13426 PAS domain TK90_1403 PF00563 EAL domain TK90_1403 PF00990 Diguanylate cyclase, GGDEF domain TK90_1403 PF00989 PAS fold TK90_1403 PF01590 GAF domain TK90_1408 PF02525 Flavodoxin-like fold TK90_1412 PF00156 Phosphoribosyl transferase domain TK90_1413 PF00156 Phosphoribosyl transferase domain TK90_1413 PF01738 Dienelactone hydrolase family TK90_1414 PF01738 Dienelactone hydrolase family TK90_1414 PF00156 Phosphoribosyl transferase domain TK90_1419 PF03030 Inorganic H+ pyrophosphatase TK90_1420 PF01230 HIT domain TK90_1422 PF00034 Cytochrome c TK90_1425 PF00360 Phytochrome region TK90_1425 PF00990 Diguanylate cyclase, GGDEF domain TK90_1425 PF01590 GAF domain TK90_1425 PF00563 EAL domain TK90_1426 PF00990 Diguanylate cyclase, GGDEF domain TK90_1426 PF08448 PAS fold TK90_1427 PF07690 Major Facilitator Superfamily TK90_1437 PF00872 Transposase, Mutator family TK90_1441 PF00268 Ribonucleotide reductase, small chain TK90_1442 PF03477 ATP cone domain TK90_1442 PF00317 Ribonucleotide reductase, all-alpha domain TK90_1442 PF02867 Ribonucleotide reductase, barrel domain TK90_1443 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_1446 PF02561 Flagellar protein FliS TK90_1447 PF07196 Flagellin hook IN motif TK90_1447 PF02465 Flagellar hook-associated protein 2 N-terminus TK90_1447 PF07195 Flagellar hook-associated protein 2 C-terminus TK90_1448 PF00669 Bacterial flagellin N-terminal helical region TK90_1448 PF00700 Bacterial flagellin C-terminal helical region TK90_1449 PF03646 FlaG protein TK90_1450 PF00669 Bacterial flagellin N-terminal helical region TK90_1450 PF00700 Bacterial flagellin C-terminal helical region TK90_1452 PF02654 Cobalamin-5-phosphate synthase TK90_1454 PF02277 Phosphoribosyltransferase TK90_1455 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TK90_1456 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TK90_1456 PF07685 CobB/CobQ-like glutamine amidotransferase domain TK90_1457 PF00155 Aminotransferase class I and II TK90_1458 PF03186 CobD/Cbib protein TK90_1458 PF17113 Regulatory signalling modulator protein AmpE TK90_1459 PF00881 Nitroreductase family TK90_1460 PF01497 Periplasmic binding protein TK90_1461 PF01032 FecCD transport family TK90_1462 PF00005 ABC transporter TK90_1464 PF02678 Pirin TK90_1464 PF05726 Pirin C-terminal cupin domain TK90_1465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TK90_1465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TK90_1467 PF02542 YgbB family TK90_1468 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TK90_1469 PF04977 Septum formation initiator TK90_1470 PF00113 Enolase, C-terminal TIM barrel domain TK90_1470 PF03952 Enolase, N-terminal domain TK90_1471 PF00793 DAHP synthetase I family TK90_1472 PF06418 CTP synthase N-terminus TK90_1472 PF00117 Glutamine amidotransferase class-I TK90_1474 PF00990 Diguanylate cyclase, GGDEF domain TK90_1475 PF09345 Domain of unknown function (DUF1987) TK90_1478 PF01171 PP-loop family TK90_1478 PF09179 TilS substrate binding domain TK90_1478 PF11734 TilS substrate C-terminal domain TK90_1479 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TK90_1480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TK90_1480 PF14579 Helix-hairpin-helix motif TK90_1480 PF07733 Bacterial DNA polymerase III alpha NTPase domain TK90_1480 PF02811 PHP domain TK90_1480 PF01336 OB-fold nucleic acid binding domain TK90_1481 PF01351 Ribonuclease HII TK90_1482 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TK90_1482 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TK90_1483 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TK90_1484 PF02684 Lipid-A-disaccharide synthetase TK90_1485 PF00132 Bacterial transferase hexapeptide (six repeats) TK90_1485 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TK90_1486 PF07977 FabA-like domain TK90_1487 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TK90_1487 PF00132 Bacterial transferase hexapeptide (six repeats) TK90_1489 PF07244 Surface antigen variable number repeat TK90_1489 PF01103 Surface antigen TK90_1490 PF17820 PDZ domain TK90_1490 PF02163 Peptidase family M50 TK90_1490 PF13180 PDZ domain TK90_1491 PF13288 DXP reductoisomerase C-terminal domain TK90_1491 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TK90_1491 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TK90_1493 PF01255 Putative undecaprenyl diphosphate synthase TK90_1494 PF01765 Ribosome recycling factor TK90_1495 PF00696 Amino acid kinase family TK90_1496 PF00889 Elongation factor TS TK90_1497 PF00318 Ribosomal protein S2 TK90_1498 PF00557 Metallopeptidase family M24 TK90_1499 PF01909 Nucleotidyltransferase domain TK90_1499 PF01966 HD domain TK90_1499 PF08335 GlnD PII-uridylyltransferase TK90_1499 PF01842 ACT domain TK90_1504 PF08448 PAS fold TK90_1504 PF08447 PAS fold TK90_1504 PF00990 Diguanylate cyclase, GGDEF domain TK90_1504 PF00563 EAL domain TK90_1505 PF03358 NADPH-dependent FMN reductase TK90_1506 PF01979 Amidohydrolase family TK90_1508 PF13419 Haloacid dehalogenase-like hydrolase TK90_1509 PF02646 RmuC family TK90_1511 PF06969 HemN C-terminal domain TK90_1511 PF04055 Radical SAM superfamily TK90_1513 PF01593 Flavin containing amine oxidoreductase TK90_1514 PF00106 short chain dehydrogenase TK90_1515 PF04055 Radical SAM superfamily TK90_1515 PF11842 Domain of unknown function (DUF3362) TK90_1515 PF08497 Radical SAM N-terminal TK90_1518 PF13187 4Fe-4S dicluster domain TK90_1518 PF01645 Conserved region in glutamate synthase TK90_1519 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TK90_1519 PF01243 Pyridoxamine 5'-phosphate oxidase TK90_1521 PF03795 YCII-related domain TK90_1523 PF00583 Acetyltransferase (GNAT) family TK90_1525 PF07237 Protein of unknown function (DUF1428) TK90_1526 PF08281 Sigma-70, region 4 TK90_1526 PF04542 Sigma-70 region 2 TK90_1527 PF02446 4-alpha-glucanotransferase TK90_1529 PF00483 Nucleotidyl transferase TK90_1530 PF00128 Alpha amylase, catalytic domain TK90_1530 PF02806 Alpha amylase, C-terminal all-beta domain TK90_1530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TK90_1533 PF01850 PIN domain TK90_1536 PF00665 Integrase core domain TK90_1536 PF13276 HTH-like domain TK90_1536 PF13333 Integrase core domain TK90_1539 PF02397 Bacterial sugar transferase TK90_1541 PF01381 Helix-turn-helix TK90_1541 PF00145 C-5 cytosine-specific DNA methylase TK90_1543 PF01370 NAD dependent epimerase/dehydratase family TK90_1545 PF00534 Glycosyl transferases group 1 TK90_1545 PF13439 Glycosyltransferase Family 4 TK90_1548 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 TK90_1548 PF00535 Glycosyl transferase family 2 TK90_1549 PF00535 Glycosyl transferase family 2 TK90_1550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TK90_1550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TK90_1550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TK90_1561 PF05598 Transposase domain (DUF772) TK90_1561 PF01609 Transposase DDE domain TK90_1572 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TK90_1572 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TK90_1573 PF02719 Polysaccharide biosynthesis protein TK90_1575 PF03120 NAD-dependent DNA ligase OB-fold domain TK90_1575 PF00533 BRCA1 C Terminus (BRCT) domain TK90_1575 PF01653 NAD-dependent DNA ligase adenylation domain TK90_1575 PF12826 Helix-hairpin-helix motif TK90_1575 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TK90_1576 PF04354 ZipA, C-terminal FtsZ-binding domain TK90_1577 PF06470 SMC proteins Flexible Hinge Domain TK90_1577 PF02463 RecF/RecN/SMC N terminal domain TK90_1578 PF14489 QueF-like protein TK90_1579 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TK90_1582 PF03458 UPF0126 domain TK90_1584 PF00672 HAMP domain TK90_1584 PF07228 Stage II sporulation protein E (SpoIIE) TK90_1586 PF00355 Rieske [2Fe-2S] domain TK90_1589 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TK90_1591 PF10609 NUBPL iron-transfer P-loop NTPase TK90_1592 PF02743 Cache domain TK90_1592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_1592 PF00512 His Kinase A (phospho-acceptor) domain TK90_1593 PF03707 Bacterial signalling protein N terminal repeat TK90_1593 PF00990 Diguanylate cyclase, GGDEF domain TK90_1593 PF00563 EAL domain TK90_1594 PF00990 Diguanylate cyclase, GGDEF domain TK90_1594 PF00563 EAL domain TK90_1594 PF03707 Bacterial signalling protein N terminal repeat TK90_1595 PF02595 Glycerate kinase family TK90_1596 PF02447 GntP family permease TK90_1597 PF01066 CDP-alcohol phosphatidyltransferase TK90_1598 PF08459 UvrC Helix-hairpin-helix N-terminal TK90_1598 PF02151 UvrB/uvrC motif TK90_1598 PF01541 GIY-YIG catalytic domain TK90_1599 PF03167 Uracil DNA glycosylase superfamily TK90_1601 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TK90_1601 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TK90_1602 PF02504 Fatty acid synthesis protein TK90_1603 PF01783 Ribosomal L32p protein family TK90_1605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TK90_1605 PF00289 Biotin carboxylase, N-terminal domain TK90_1605 PF02785 Biotin carboxylase C-terminal domain TK90_1606 PF02436 Conserved carboxylase domain TK90_1606 PF00682 HMGL-like TK90_1606 PF00364 Biotin-requiring enzyme TK90_1607 PF02545 Maf-like protein TK90_1608 PF01022 Bacterial regulatory protein, arsR family TK90_1612 PF02599 Global regulator protein family TK90_1613 PF13840 ACT domain TK90_1613 PF01842 ACT domain TK90_1613 PF00696 Amino acid kinase family TK90_1614 PF02272 DHHA1 domain TK90_1614 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TK90_1614 PF01411 tRNA synthetases class II (A) TK90_1615 PF02631 RecX family TK90_1616 PF00154 recA bacterial DNA recombination protein TK90_1617 PF02464 Competence-damaged protein TK90_1619 PF05188 MutS domain II TK90_1619 PF01624 MutS domain I TK90_1619 PF00488 MutS domain V TK90_1619 PF05190 MutS family domain IV TK90_1619 PF05192 MutS domain III TK90_1620 PF02321 Outer membrane efflux protein TK90_1621 PF00873 AcrB/AcrD/AcrF family TK90_1622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TK90_1623 PF13538 UvrD-like helicase C-terminal domain TK90_1624 PF12705 PD-(D/E)XK nuclease superfamily TK90_1624 PF13361 UvrD-like helicase C-terminal domain TK90_1624 PF00580 UvrD/REP helicase N-terminal domain TK90_1625 PF17946 RecC C-terminal domain TK90_1626 PF01773 Na+ dependent nucleoside transporter N-terminus TK90_1626 PF07662 Na+ dependent nucleoside transporter C-terminus TK90_1626 PF07670 Nucleoside recognition TK90_1628 PF00528 Binding-protein-dependent transport system inner membrane component TK90_1629 PF03459 TOBE domain TK90_1629 PF00005 ABC transporter TK90_1633 PF01381 Helix-turn-helix TK90_1634 PF02384 N-6 DNA Methylase TK90_1634 PF12161 HsdM N-terminal domain TK90_1635 PF01420 Type I restriction modification DNA specificity domain TK90_1637 PF04851 Type III restriction enzyme, res subunit TK90_1637 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TK90_1637 PF00271 Helicase conserved C-terminal domain TK90_1637 PF08463 EcoEI R protein C-terminal TK90_1642 PF00224 Pyruvate kinase, barrel domain TK90_1642 PF02887 Pyruvate kinase, alpha/beta domain TK90_1642 PF00391 PEP-utilising enzyme, mobile domain TK90_1643 PF01965 DJ-1/PfpI family TK90_1643 PF12833 Helix-turn-helix domain TK90_1645 PF02080 TrkA-C domain TK90_1645 PF03600 Citrate transporter TK90_1646 PF00326 Prolyl oligopeptidase family TK90_1648 PF03449 Transcription elongation factor, N-terminal TK90_1648 PF01272 Transcription elongation factor, GreA/GreB, C-term TK90_1650 PF12823 Domain of unknown function (DUF3817) TK90_1652 PF07732 Multicopper oxidase TK90_1653 PF00665 Integrase core domain TK90_1653 PF13276 HTH-like domain TK90_1653 PF13333 Integrase core domain TK90_1655 PF01741 Large-conductance mechanosensitive channel, MscL TK90_1658 PF00293 NUDIX domain TK90_1663 PF00990 Diguanylate cyclase, GGDEF domain TK90_1667 PF00990 Diguanylate cyclase, GGDEF domain TK90_1667 PF08448 PAS fold TK90_1667 PF00563 EAL domain TK90_1668 PF01844 HNH endonuclease TK90_1671 PF01557 Fumarylacetoacetate (FAA) hydrolase family TK90_1676 PF14403 Circularly permuted ATP-grasp type 2 TK90_1678 PF04608 Phosphatidylglycerophosphatase A TK90_1679 PF02769 AIR synthase related protein, C-terminal domain TK90_1679 PF00586 AIR synthase related protein, N-terminal domain TK90_1680 PF01029 NusB family TK90_1681 PF00885 6,7-dimethyl-8-ribityllumazine synthase TK90_1682 PF01794 Ferric reductase like transmembrane component TK90_1683 PF00174 Oxidoreductase molybdopterin binding domain TK90_1688 PF02687 FtsX-like permease family TK90_1688 PF12704 MacB-like periplasmic core domain TK90_1689 PF00005 ABC transporter TK90_1690 PF00571 CBS domain TK90_1690 PF01769 Divalent cation transporter TK90_1690 PF03448 MgtE intracellular N domain TK90_1691 PF00571 CBS domain TK90_1691 PF03448 MgtE intracellular N domain TK90_1691 PF01769 Divalent cation transporter TK90_1708 PF08502 LeuA allosteric (dimerisation) domain TK90_1708 PF00682 HMGL-like TK90_1709 PF01037 Lrp/AsnC ligand binding domain TK90_1709 PF13404 AsnC-type helix-turn-helix domain TK90_1710 PF00950 ABC 3 transport family TK90_1711 PF00005 ABC transporter TK90_1712 PF01297 Zinc-uptake complex component A periplasmic TK90_1714 PF08448 PAS fold TK90_1714 PF00990 Diguanylate cyclase, GGDEF domain TK90_1715 PF08448 PAS fold TK90_1715 PF00990 Diguanylate cyclase, GGDEF domain TK90_1716 PF02347 Glycine cleavage system P-protein TK90_1717 PF08534 Redoxin TK90_1718 PF02347 Glycine cleavage system P-protein TK90_1719 PF01597 Glycine cleavage H-protein TK90_1720 PF08669 Glycine cleavage T-protein C-terminal barrel domain TK90_1720 PF01571 Aminomethyltransferase folate-binding domain TK90_1721 PF02535 ZIP Zinc transporter TK90_1722 PF01235 Sodium:alanine symporter family TK90_1723 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TK90_1723 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TK90_1724 PF04079 Segregation and condensation complex subunit ScpB TK90_1725 PF02616 Segregation and condensation protein ScpA TK90_1726 PF00579 tRNA synthetases class I (W and Y) TK90_1728 PF01300 Telomere recombination TK90_1729 PF03795 YCII-related domain TK90_1732 PF00529 HlyD membrane-fusion protein of T1SS TK90_1732 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TK90_1733 PF00873 AcrB/AcrD/AcrF family TK90_1735 PF10576 Iron-sulfur binding domain of endonuclease III TK90_1735 PF00633 Helix-hairpin-helix motif TK90_1735 PF00730 HhH-GPD superfamily base excision DNA repair protein TK90_1739 PF12832 MFS_1 like family TK90_1740 PF01264 Chorismate synthase TK90_1743 PF14760 Rnk N-terminus TK90_1743 PF01272 Transcription elongation factor, GreA/GreB, C-term TK90_1744 PF00581 Rhodanese-like domain TK90_1746 PF01597 Glycine cleavage H-protein TK90_1750 PF00990 Diguanylate cyclase, GGDEF domain TK90_1753 PF00849 RNA pseudouridylate synthase TK90_1753 PF01479 S4 domain TK90_1754 PF00994 Probable molybdopterin binding domain TK90_1755 PF04343 Protein of unknown function, DUF488 TK90_1756 PF13537 Glutamine amidotransferase domain TK90_1756 PF00733 Asparagine synthase TK90_1757 PF03466 LysR substrate binding domain TK90_1757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_1759 PF08496 Peptidase family S49 N-terminal TK90_1759 PF01343 Peptidase family S49 TK90_1765 PF08443 RimK-like ATP-grasp domain TK90_1765 PF18030 RimK PreATP-grasp domain TK90_1766 PF08443 RimK-like ATP-grasp domain TK90_1766 PF18030 RimK PreATP-grasp domain TK90_1768 PF00578 AhpC/TSA family TK90_1770 PF01292 Prokaryotic cytochrome b561 TK90_1771 PF13419 Haloacid dehalogenase-like hydrolase TK90_1772 PF00472 RF-1 domain TK90_1774 PF00009 Elongation factor Tu GTP binding domain TK90_1774 PF16658 Class II release factor RF3, C-terminal domain TK90_1774 PF03144 Elongation factor Tu domain 2 TK90_1776 PF00583 Acetyltransferase (GNAT) family TK90_1777 PF03167 Uracil DNA glycosylase superfamily TK90_1778 PF01066 CDP-alcohol phosphatidyltransferase TK90_1779 PF02666 Phosphatidylserine decarboxylase TK90_1780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TK90_1780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TK90_1781 PF10369 Small subunit of acetolactate synthase TK90_1782 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TK90_1782 PF00205 Thiamine pyrophosphate enzyme, central domain TK90_1782 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TK90_1784 PF00696 Amino acid kinase family TK90_1785 PF00692 dUTPase TK90_1786 PF10609 NUBPL iron-transfer P-loop NTPase TK90_1787 PF01588 Putative tRNA binding domain TK90_1787 PF09334 tRNA synthetases class I (M) TK90_1788 PF00596 Class II Aldolase and Adducin N-terminal domain TK90_1790 PF02508 Rnf-Nqr subunit, membrane protein TK90_1791 PF04060 Putative Fe-S cluster TK90_1792 PF12838 4Fe-4S dicluster domain TK90_1792 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TK90_1792 PF13375 RnfC Barrel sandwich hybrid domain TK90_1792 PF10531 SLBB domain TK90_1793 PF03116 NQR2, RnfD, RnfE family TK90_1794 PF04205 FMN-binding domain TK90_1795 PF02508 Rnf-Nqr subunit, membrane protein TK90_1797 PF08241 Methyltransferase domain TK90_1798 PF00860 Permease family TK90_1799 PF01227 GTP cyclohydrolase I TK90_1801 PF00255 Glutathione peroxidase TK90_1810 PF00872 Transposase, Mutator family TK90_1814 PF13609 Gram-negative porin TK90_1816 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system TK90_1819 PF01494 FAD binding domain TK90_1820 PF01494 FAD binding domain TK90_1821 PF00557 Metallopeptidase family M24 TK90_1821 PF05195 Aminopeptidase P, N-terminal domain TK90_1822 PF03695 Uncharacterised protein family (UPF0149) TK90_1825 PF05164 Cell division protein ZapA TK90_1826 PF03548 Outer membrane lipoprotein carrier protein LolA TK90_1827 PF09397 Ftsk gamma domain TK90_1827 PF17854 FtsK alpha domain TK90_1827 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TK90_1827 PF01580 FtsK/SpoIIIE family TK90_1831 PF03471 Transporter associated domain TK90_1831 PF00999 Sodium/hydrogen exchanger family TK90_1831 PF02080 TrkA-C domain TK90_1832 PF00717 Peptidase S24-like TK90_1832 PF01726 LexA DNA binding domain TK90_1833 PF00154 recA bacterial DNA recombination protein TK90_1835 PF01370 NAD dependent epimerase/dehydratase family TK90_1836 PF03776 Septum formation topological specificity factor MinE TK90_1837 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TK90_1838 PF03775 Septum formation inhibitor MinC, C-terminal domain TK90_1838 PF05209 Septum formation inhibitor MinC, N-terminal domain TK90_1841 PF01968 Hydantoinase/oxoprolinase TK90_1841 PF05378 Hydantoinase/oxoprolinase N-terminal region TK90_1844 PF05173 Dihydrodipicolinate reductase, C-terminus TK90_1844 PF01113 Dihydrodipicolinate reductase, N-terminus TK90_1845 PF05175 Methyltransferase small domain TK90_1846 PF02666 Phosphatidylserine decarboxylase TK90_1847 PF00929 Exonuclease TK90_1849 PF01329 Pterin 4 alpha carbinolamine dehydratase TK90_1850 PF03193 RsgA GTPase TK90_1852 PF01230 HIT domain TK90_1853 PF02132 RecR protein TK90_1853 PF13662 Toprim domain TK90_1854 PF02575 YbaB/EbfC DNA-binding family TK90_1855 PF12169 DNA polymerase III subunits gamma and tau domain III TK90_1855 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding TK90_1855 PF12170 DNA polymerase III tau subunit V interacting with alpha TK90_1856 PF00462 Glutaredoxin TK90_1856 PF08534 Redoxin TK90_1857 PF07992 Pyridine nucleotide-disulphide oxidoreductase TK90_1857 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TK90_1860 PF05532 CsbD-like TK90_1861 PF07043 Protein of unknown function (DUF1328) TK90_1863 PF00571 CBS domain TK90_1863 PF01380 SIS domain TK90_1865 PF00474 Sodium:solute symporter family TK90_1868 PF00501 AMP-binding enzyme TK90_1868 PF13193 AMP-binding enzyme C-terminal domain TK90_1868 PF16177 Acetyl-coenzyme A synthetase N-terminus TK90_1869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_1869 PF03459 TOBE domain TK90_1870 PF00990 Diguanylate cyclase, GGDEF domain TK90_1870 PF00563 EAL domain TK90_1870 PF03707 Bacterial signalling protein N terminal repeat TK90_1873 PF01740 STAS domain TK90_1875 PF01106 NifU-like domain TK90_1876 PF03937 Flavinator of succinate dehydrogenase TK90_1877 PF13085 2Fe-2S iron-sulfur cluster binding domain TK90_1878 PF02910 Fumarate reductase flavoprotein C-term TK90_1878 PF00890 FAD binding domain TK90_1879 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TK90_1883 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TK90_1883 PF00925 GTP cyclohydrolase II TK90_1884 PF00677 Lumazine binding domain TK90_1885 PF01872 RibD C-terminal domain TK90_1885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TK90_1886 PF03477 ATP cone domain TK90_1887 PF00464 Serine hydroxymethyltransferase TK90_1890 PF16868 NMT1-like family TK90_1893 PF01565 FAD binding domain TK90_1894 PF13183 4Fe-4S dicluster domain TK90_1894 PF02754 Cysteine-rich domain TK90_1895 PF00266 Aminotransferase class-V TK90_1897 PF01569 PAP2 superfamily TK90_1898 PF13439 Glycosyltransferase Family 4 TK90_1898 PF00534 Glycosyl transferases group 1 TK90_1901 PF00581 Rhodanese-like domain TK90_1901 PF00899 ThiF family TK90_1902 PF03190 Protein of unknown function, DUF255 TK90_1903 PF01790 Prolipoprotein diacylglyceryl transferase TK90_1904 PF00303 Thymidylate synthase TK90_1905 PF00186 Dihydrofolate reductase TK90_1906 PF10996 Beta-Casp domain TK90_1906 PF00753 Metallo-beta-lactamase superfamily TK90_1906 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TK90_1912 PF00117 Glutamine amidotransferase class-I TK90_1912 PF00958 GMP synthase C terminal domain TK90_1912 PF02540 NAD synthase TK90_1913 PF00571 CBS domain TK90_1913 PF00478 IMP dehydrogenase / GMP reductase domain TK90_1915 PF02601 Exonuclease VII, large subunit TK90_1915 PF13742 OB-fold nucleic acid binding domain TK90_1916 PF00749 tRNA synthetases class I (E and Q), catalytic domain TK90_1917 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TK90_1918 PF00149 Calcineurin-like phosphoesterase TK90_1919 PF02321 Outer membrane efflux protein TK90_1920 PF00873 AcrB/AcrD/AcrF family TK90_1921 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TK90_1922 PF00440 Bacterial regulatory proteins, tetR family TK90_1923 PF04305 Protein of unknown function (DUF455) TK90_1925 PF00403 Heavy-metal-associated domain TK90_1928 PF13091 PLD-like domain TK90_1928 PF13396 Phospholipase_D-nuclease N-terminal TK90_1929 PF01053 Cys/Met metabolism PLP-dependent enzyme TK90_1930 PF01168 Alanine racemase, N-terminal domain TK90_1930 PF00842 Alanine racemase, C-terminal domain TK90_1931 PF00772 DnaB-like helicase N terminal domain TK90_1931 PF03796 DnaB-like helicase C terminal domain TK90_1932 PF01281 Ribosomal protein L9, N-terminal domain TK90_1932 PF03948 Ribosomal protein L9, C-terminal domain TK90_1934 PF01084 Ribosomal protein S18 TK90_1935 PF01250 Ribosomal protein S6 TK90_1937 PF08032 RNA 2'-O ribose methyltransferase substrate binding TK90_1937 PF00588 SpoU rRNA Methylase family TK90_1938 PF08461 Ribonuclease R winged-helix domain TK90_1938 PF17876 Cold shock domain TK90_1938 PF08206 Ribonuclease B OB domain TK90_1938 PF00773 RNB domain TK90_1938 PF00575 S1 RNA binding domain TK90_1939 PF00709 Adenylosuccinate synthetase TK90_1940 PF13393 Histidyl-tRNA synthetase TK90_1941 PF01145 SPFH domain / Band 7 family TK90_1942 PF12221 Bacterial membrane protein N terminal TK90_1942 PF01145 SPFH domain / Band 7 family TK90_1943 PF01648 4'-phosphopantetheinyl transferase superfamily TK90_1944 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TK90_1945 PF02565 Recombination protein O C terminal TK90_1945 PF11967 Recombination protein O N terminal TK90_1946 PF07650 KH domain TK90_1946 PF01926 50S ribosome-binding GTPase TK90_1947 PF14622 Ribonuclease-III-like TK90_1947 PF00035 Double-stranded RNA binding motif TK90_1949 PF10502 Signal peptidase, peptidase S26 TK90_1950 PF00009 Elongation factor Tu GTP binding domain TK90_1950 PF00679 Elongation factor G C-terminus TK90_1950 PF06421 GTP-binding protein LepA C-terminus TK90_1951 PF05768 Glutaredoxin-like domain (DUF836) TK90_1952 PF13180 PDZ domain TK90_1954 PF03888 MucB/RseB N-terminal domain TK90_1954 PF17188 MucB/RseB C-terminal domain TK90_1956 PF08281 Sigma-70, region 4 TK90_1956 PF04542 Sigma-70 region 2 TK90_1957 PF00890 FAD binding domain TK90_1957 PF02910 Fumarate reductase flavoprotein C-term TK90_1958 PF00970 Oxidoreductase FAD-binding domain TK90_1958 PF00042 Globin TK90_1958 PF00175 Oxidoreductase NAD-binding domain TK90_1959 PF03819 MazG nucleotide pyrophosphohydrolase domain TK90_1960 PF04273 Putative phosphatase (DUF442) TK90_1960 PF00753 Metallo-beta-lactamase superfamily TK90_1961 PF01722 BolA-like protein TK90_1966 PF04055 Radical SAM superfamily TK90_1967 PF03099 Biotin/lipoate A/B protein ligase family TK90_1968 PF04359 Protein of unknown function (DUF493) TK90_1969 PF01063 Amino-transferase class IV TK90_1970 PF07943 Penicillin-binding protein 5, C-terminal domain TK90_1970 PF00768 D-alanyl-D-alanine carboxypeptidase TK90_1971 PF05036 Sporulation related domain TK90_1971 PF03330 Lytic transglycolase TK90_1972 PF13406 Transglycosylase SLT domain TK90_1973 PF01098 Cell cycle protein TK90_1974 PF03717 Penicillin-binding Protein dimerisation domain TK90_1974 PF00905 Penicillin binding protein transpeptidase domain TK90_1975 PF00719 Inorganic pyrophosphatase TK90_1976 PF05191 Adenylate kinase, active site lid TK90_1977 PF04453 LPS transport system D TK90_1978 PF00639 PPIC-type PPIASE domain TK90_1978 PF09312 SurA N-terminal domain TK90_1979 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TK90_1980 PF00398 Ribosomal RNA adenine dimethylase TK90_1982 PF04379 ApaG domain TK90_1983 PF00149 Calcineurin-like phosphoesterase TK90_1984 PF01523 Putative modulator of DNA gyrase TK90_1986 PF01523 Putative modulator of DNA gyrase TK90_1987 PF00795 Carbon-nitrogen hydrolase TK90_1989 PF10150 Ribonuclease E/G family TK90_1989 PF00575 S1 RNA binding domain TK90_1990 PF01594 AI-2E family transporter TK90_1993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_1993 PF03466 LysR substrate binding domain TK90_1994 PF00563 EAL domain TK90_1994 PF00990 Diguanylate cyclase, GGDEF domain TK90_1994 PF03707 Bacterial signalling protein N terminal repeat TK90_1995 PF00830 Ribosomal L28 family TK90_1996 PF00471 Ribosomal protein L33 TK90_1998 PF00360 Phytochrome region TK90_1998 PF00990 Diguanylate cyclase, GGDEF domain TK90_1998 PF01590 GAF domain TK90_1998 PF00563 EAL domain TK90_2000 PF06827 Zinc finger found in FPG and IleRS TK90_2000 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TK90_2000 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TK90_2001 PF02824 TGS domain TK90_2001 PF04607 Region found in RelA / SpoT proteins TK90_2001 PF13291 ACT domain TK90_2002 PF01192 RNA polymerase Rpb6 TK90_2003 PF00625 Guanylate kinase TK90_2004 PF00348 Polyprenyl synthetase TK90_2005 PF00829 Ribosomal prokaryotic L21 protein TK90_2006 PF01016 Ribosomal L27 protein TK90_2007 PF01018 GTP1/OBG TK90_2007 PF01926 50S ribosome-binding GTPase TK90_2008 PF01472 PUA domain TK90_2008 PF00696 Amino acid kinase family TK90_2009 PF01042 Endoribonuclease L-PSP TK90_2010 PF00271 Helicase conserved C-terminal domain TK90_2010 PF00270 DEAD/DEAH box helicase TK90_2010 PF17191 RecG wedge domain TK90_2011 PF04226 Transglycosylase associated protein TK90_2013 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) TK90_2016 PF07499 RuvA, C-terminal domain TK90_2016 PF01330 RuvA N terminal domain TK90_2017 PF02075 Crossover junction endodeoxyribonuclease RuvC TK90_2018 PF01709 Transcriptional regulator TK90_2019 PF01965 DJ-1/PfpI family TK90_2020 PF03572 Peptidase family S41 TK90_2020 PF13180 PDZ domain TK90_2021 PF01551 Peptidase family M23 TK90_2024 PF00462 Glutaredoxin TK90_2025 PF02556 Preprotein translocase subunit SecB TK90_2026 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TK90_2026 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TK90_2029 PF02028 BCCT, betaine/carnitine/choline family transporter TK90_2030 PF10005 zinc-ribbon domain TK90_2030 PF15887 Putative zinc-binding metallo-peptidase TK90_2032 PF07724 AAA domain (Cdc48 subfamily) TK90_2032 PF17871 AAA lid domain TK90_2032 PF02861 Clp amino terminal domain, pathogenicity island component TK90_2032 PF00004 ATPase family associated with various cellular activities (AAA) TK90_2032 PF10431 C-terminal, D2-small domain, of ClpB protein TK90_2034 PF00849 RNA pseudouridylate synthase TK90_2035 PF13525 Outer membrane lipoprotein TK90_2036 PF00543 Nitrogen regulatory protein P-II TK90_2037 PF02371 Transposase IS116/IS110/IS902 family TK90_2037 PF01548 Transposase TK90_2038 PF02540 NAD synthase TK90_2038 PF00795 Carbon-nitrogen hydrolase TK90_2039 PF00549 CoA-ligase TK90_2039 PF02629 CoA binding domain TK90_2040 PF00549 CoA-ligase TK90_2040 PF08442 ATP-grasp domain TK90_2041 PF02261 Aspartate decarboxylase TK90_2042 PF02569 Pantoate-beta-alanine ligase TK90_2043 PF02548 Ketopantoate hydroxymethyltransferase TK90_2044 PF01712 Deoxynucleoside kinase TK90_2045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TK90_2046 PF12627 Probable RNA and SrmB- binding site of polymerase A TK90_2046 PF01743 Poly A polymerase head domain TK90_2046 PF12626 Polymerase A arginine-rich C-terminus TK90_2047 PF00293 NUDIX domain TK90_2048 PF01479 S4 domain TK90_2050 PF01475 Ferric uptake regulator family TK90_2051 PF04355 SmpA / OmlA family TK90_2052 PF03658 RnfH family Ubiquitin TK90_2053 PF03364 Polyketide cyclase / dehydrase and lipid transport TK90_2054 PF00209 Sodium:neurotransmitter symporter family TK90_2055 PF01668 SmpB protein TK90_2059 PF01594 AI-2E family transporter TK90_2061 PF04408 Helicase associated domain (HA2) TK90_2061 PF00270 DEAD/DEAH box helicase TK90_2061 PF00271 Helicase conserved C-terminal domain TK90_2061 PF08482 ATP-dependent helicase C-terminal TK90_2064 PF00005 ABC transporter TK90_2066 PF01548 Transposase TK90_2066 PF02371 Transposase IS116/IS110/IS902 family TK90_2071 PF01734 Patatin-like phospholipase TK90_2074 PF01544 CorA-like Mg2+ transporter protein TK90_2075 PF00141 Peroxidase TK90_2079 PF01914 MarC family integral membrane protein TK90_2085 PF03466 LysR substrate binding domain TK90_2085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_2086 PF07681 DoxX TK90_2089 PF05726 Pirin C-terminal cupin domain TK90_2089 PF02678 Pirin TK90_2092 PF01435 Peptidase family M48 TK90_2094 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TK90_2098 PF00873 AcrB/AcrD/AcrF family TK90_2101 PF01751 Toprim domain TK90_2101 PF00204 DNA gyrase B TK90_2101 PF00986 DNA gyrase B subunit, carboxyl terminus TK90_2101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2102 PF00085 Thioredoxin TK90_2103 PF10411 Disulfide bond isomerase protein N-terminus TK90_2103 PF13098 Thioredoxin-like domain TK90_2104 PF02899 Phage integrase, N-terminal SAM-like domain TK90_2104 PF00589 Phage integrase family TK90_2105 PF01145 SPFH domain / Band 7 family TK90_2107 PF12804 MobA-like NTP transferase domain TK90_2108 PF03205 Molybdopterin guanine dinucleotide synthesis protein B TK90_2109 PF03453 MoeA N-terminal region (domain I and II) TK90_2109 PF03454 MoeA C-terminal region (domain IV) TK90_2109 PF00994 Probable molybdopterin binding domain TK90_2110 PF07238 PilZ domain TK90_2114 PF03739 Lipopolysaccharide export system permease LptF/LptG TK90_2115 PF02789 Cytosol aminopeptidase family, N-terminal domain TK90_2115 PF00883 Cytosol aminopeptidase family, catalytic domain TK90_2119 PF00342 Phosphoglucose isomerase TK90_2120 PF00534 Glycosyl transferases group 1 TK90_2120 PF08323 Starch synthase catalytic domain TK90_2121 PF00311 Phosphoenolpyruvate carboxylase TK90_2123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2123 PF00512 His Kinase A (phospho-acceptor) domain TK90_2124 PF00072 Response regulator receiver domain TK90_2124 PF00158 Sigma-54 interaction domain TK90_2124 PF02954 Bacterial regulatory protein, Fis family TK90_2125 PF02545 Maf-like protein TK90_2126 PF02590 Predicted SPOUT methyltransferase TK90_2128 PF01467 Cytidylyltransferase-like TK90_2129 PF00171 Aldehyde dehydrogenase family TK90_2132 PF08264 Anticodon-binding domain of tRNA TK90_2132 PF00133 tRNA synthetases class I (I, L, M and V) TK90_2132 PF13603 Leucyl-tRNA synthetase, Domain 2 TK90_2135 PF00795 Carbon-nitrogen hydrolase TK90_2136 PF03471 Transporter associated domain TK90_2136 PF00571 CBS domain TK90_2137 PF02130 Uncharacterized protein family UPF0054 TK90_2138 PF02562 PhoH-like protein TK90_2139 PF04055 Radical SAM superfamily TK90_2139 PF01938 TRAM domain TK90_2139 PF00919 Uncharacterized protein family UPF0004 TK90_2140 PF00436 Single-strand binding protein family TK90_2141 PF07690 Major Facilitator Superfamily TK90_2142 PF17760 UvrA interaction domain TK90_2142 PF17755 UvrA DNA-binding domain TK90_2143 PF01196 Ribosomal protein L17 TK90_2144 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TK90_2144 PF01000 RNA polymerase Rpb3/RpoA insert domain TK90_2144 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TK90_2145 PF00163 Ribosomal protein S4/S9 N-terminal domain TK90_2145 PF01479 S4 domain TK90_2146 PF00411 Ribosomal protein S11 TK90_2147 PF00416 Ribosomal protein S13/S18 TK90_2148 PF00444 Ribosomal protein L36 TK90_2149 PF00344 SecY translocase TK90_2150 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TK90_2151 PF00327 Ribosomal protein L30p/L7e TK90_2152 PF00333 Ribosomal protein S5, N-terminal domain TK90_2152 PF03719 Ribosomal protein S5, C-terminal domain TK90_2153 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TK90_2154 PF00347 Ribosomal protein L6 TK90_2155 PF00410 Ribosomal protein S8 TK90_2156 PF00253 Ribosomal protein S14p/S29e TK90_2157 PF00281 Ribosomal protein L5 TK90_2157 PF00673 ribosomal L5P family C-terminus TK90_2158 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TK90_2158 PF00467 KOW motif TK90_2159 PF00238 Ribosomal protein L14p/L23e TK90_2160 PF00366 Ribosomal protein S17 TK90_2161 PF00831 Ribosomal L29 protein TK90_2162 PF00252 Ribosomal protein L16p/L10e TK90_2163 PF00189 Ribosomal protein S3, C-terminal domain TK90_2163 PF07650 KH domain TK90_2164 PF00237 Ribosomal protein L22p/L17e TK90_2165 PF00203 Ribosomal protein S19 TK90_2166 PF00181 Ribosomal Proteins L2, RNA binding domain TK90_2166 PF03947 Ribosomal Proteins L2, C-terminal domain TK90_2167 PF00276 Ribosomal protein L23 TK90_2168 PF00573 Ribosomal protein L4/L1 family TK90_2169 PF00297 Ribosomal protein L3 TK90_2170 PF00338 Ribosomal protein S10p/S20e TK90_2171 PF03143 Elongation factor Tu C-terminal domain TK90_2171 PF03144 Elongation factor Tu domain 2 TK90_2171 PF00009 Elongation factor Tu GTP binding domain TK90_2172 PF03764 Elongation factor G, domain IV TK90_2172 PF14492 Elongation Factor G, domain II TK90_2172 PF00679 Elongation factor G C-terminus TK90_2172 PF00009 Elongation factor Tu GTP binding domain TK90_2172 PF03144 Elongation factor Tu domain 2 TK90_2173 PF00177 Ribosomal protein S7p/S5e TK90_2174 PF00164 Ribosomal protein S12/S23 TK90_2175 PF00623 RNA polymerase Rpb1, domain 2 TK90_2175 PF04998 RNA polymerase Rpb1, domain 5 TK90_2175 PF05000 RNA polymerase Rpb1, domain 4 TK90_2175 PF04997 RNA polymerase Rpb1, domain 1 TK90_2175 PF04983 RNA polymerase Rpb1, domain 3 TK90_2176 PF10385 RNA polymerase beta subunit external 1 domain TK90_2176 PF04560 RNA polymerase Rpb2, domain 7 TK90_2176 PF04565 RNA polymerase Rpb2, domain 3 TK90_2176 PF04561 RNA polymerase Rpb2, domain 2 TK90_2176 PF04563 RNA polymerase beta subunit TK90_2176 PF00562 RNA polymerase Rpb2, domain 6 TK90_2177 PF16320 Ribosomal protein L7/L12 dimerisation domain TK90_2177 PF00542 Ribosomal protein L7/L12 C-terminal domain TK90_2178 PF00466 Ribosomal protein L10 TK90_2179 PF00687 Ribosomal protein L1p/L10e family TK90_2180 PF00298 Ribosomal protein L11, RNA binding domain TK90_2180 PF03946 Ribosomal protein L11, N-terminal domain TK90_2181 PF00467 KOW motif TK90_2181 PF02357 Transcription termination factor nusG TK90_2182 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TK90_2183 PF00009 Elongation factor Tu GTP binding domain TK90_2183 PF03144 Elongation factor Tu domain 2 TK90_2183 PF03143 Elongation factor Tu C-terminal domain TK90_2184 PF00437 Type II/IV secretion system protein TK90_2184 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TK90_2185 PF00482 Type II secretion system (T2SS), protein F TK90_2186 PF06750 Bacterial Peptidase A24 N-terminal domain TK90_2186 PF01478 Type IV leader peptidase family TK90_2187 PF01121 Dephospho-CoA kinase TK90_2188 PF07072 Cell division protein TK90_2189 PF00293 NUDIX domain TK90_2190 PF01960 ArgJ family TK90_2191 PF02810 SEC-C motif TK90_2191 PF07517 SecA DEAD-like domain TK90_2191 PF01043 SecA preprotein cross-linking domain TK90_2191 PF07516 SecA Wing and Scaffold domain TK90_2194 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TK90_2195 PF00091 Tubulin/FtsZ family, GTPase domain TK90_2195 PF12327 FtsZ family, C-terminal domain TK90_2196 PF02491 SHS2 domain inserted in FTSA TK90_2197 PF08478 POTRA domain, FtsQ-type TK90_2197 PF03799 Cell division protein FtsQ TK90_2198 PF01820 D-ala D-ala ligase N-terminus TK90_2198 PF07478 D-ala D-ala ligase C-terminus TK90_2199 PF01565 FAD binding domain TK90_2199 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TK90_2200 PF08245 Mur ligase middle domain TK90_2200 PF02875 Mur ligase family, glutamate ligase domain TK90_2200 PF01225 Mur ligase family, catalytic domain TK90_2201 PF04101 Glycosyltransferase family 28 C-terminal domain TK90_2201 PF03033 Glycosyltransferase family 28 N-terminal domain TK90_2202 PF01098 Cell cycle protein TK90_2203 PF02875 Mur ligase family, glutamate ligase domain TK90_2203 PF08245 Mur ligase middle domain TK90_2204 PF00953 Glycosyl transferase family 4 TK90_2204 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TK90_2205 PF01225 Mur ligase family, catalytic domain TK90_2205 PF02875 Mur ligase family, glutamate ligase domain TK90_2205 PF08245 Mur ligase middle domain TK90_2206 PF08245 Mur ligase middle domain TK90_2206 PF02875 Mur ligase family, glutamate ligase domain TK90_2206 PF01225 Mur ligase family, catalytic domain TK90_2207 PF00905 Penicillin binding protein transpeptidase domain TK90_2207 PF03717 Penicillin-binding Protein dimerisation domain TK90_2208 PF04999 Cell division protein FtsL TK90_2209 PF01795 MraW methylase family TK90_2210 PF02381 MraZ protein, putative antitoxin-like TK90_2211 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TK90_2212 PF04348 LppC putative lipoprotein TK90_2213 PF02021 Uncharacterised protein family UPF0102 TK90_2214 PF02913 FAD linked oxidases, C-terminal domain TK90_2214 PF01565 FAD binding domain TK90_2215 PF04386 Stringent starvation protein B TK90_2216 PF00043 Glutathione S-transferase, C-terminal domain TK90_2216 PF02798 Glutathione S-transferase, N-terminal domain TK90_2217 PF02167 Cytochrome C1 family TK90_2218 PF00032 Cytochrome b(C-terminal)/b6/petD TK90_2218 PF00033 Cytochrome b/b6/petB TK90_2219 PF00355 Rieske [2Fe-2S] domain TK90_2219 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TK90_2220 PF01784 NIF3 (NGG1p interacting factor 3) TK90_2221 PF13180 PDZ domain TK90_2227 PF11940 Domain of unknown function (DUF3458) Ig-like fold TK90_2227 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TK90_2227 PF01433 Peptidase family M1 domain TK90_2228 PF01026 TatD related DNase TK90_2231 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system TK90_2232 PF18030 RimK PreATP-grasp domain TK90_2232 PF08443 RimK-like ATP-grasp domain TK90_2236 PF13419 Haloacid dehalogenase-like hydrolase TK90_2237 PF01722 BolA-like protein TK90_2240 PF00271 Helicase conserved C-terminal domain TK90_2240 PF00270 DEAD/DEAH box helicase TK90_2240 PF08494 DEAD/H associated TK90_2241 PF01220 Dehydroquinase class II TK90_2242 PF00364 Biotin-requiring enzyme TK90_2243 PF00289 Biotin carboxylase, N-terminal domain TK90_2243 PF02785 Biotin carboxylase C-terminal domain TK90_2243 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TK90_2246 PF01207 Dihydrouridine synthase (Dus) TK90_2247 PF02954 Bacterial regulatory protein, Fis family TK90_2248 PF00459 Inositol monophosphatase family TK90_2251 PF01510 N-acetylmuramoyl-L-alanine amidase TK90_2254 PF13361 UvrD-like helicase C-terminal domain TK90_2254 PF00580 UvrD/REP helicase N-terminal domain TK90_2255 PF00999 Sodium/hydrogen exchanger family TK90_2255 PF03471 Transporter associated domain TK90_2255 PF02080 TrkA-C domain TK90_2257 PF00753 Metallo-beta-lactamase superfamily TK90_2259 PF04127 DNA / pantothenate metabolism flavoprotein TK90_2259 PF02441 Flavoprotein TK90_2260 PF00692 dUTPase TK90_2261 PF01625 Peptide methionine sulfoxide reductase TK90_2262 PF07995 Glucose / Sorbosone dehydrogenase TK90_2263 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TK90_2263 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TK90_2263 PF06827 Zinc finger found in FPG and IleRS TK90_2264 PF03279 Bacterial lipid A biosynthesis acyltransferase TK90_2266 PF02386 Cation transport protein TK90_2267 PF02080 TrkA-C domain TK90_2267 PF02254 TrkA-N domain TK90_2268 PF00158 Sigma-54 interaction domain TK90_2268 PF02954 Bacterial regulatory protein, Fis family TK90_2268 PF00072 Response regulator receiver domain TK90_2269 PF00512 His Kinase A (phospho-acceptor) domain TK90_2269 PF00672 HAMP domain TK90_2269 PF00989 PAS fold TK90_2269 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2271 PF01189 16S rRNA methyltransferase RsmB/F TK90_2271 PF01029 NusB family TK90_2272 PF00551 Formyl transferase TK90_2272 PF02911 Formyl transferase, C-terminal domain TK90_2273 PF01327 Polypeptide deformylase TK90_2275 PF17782 DprA winged helix domain TK90_2275 PF02481 DNA recombination-mediator protein A TK90_2276 PF04361 Protein of unknown function (DUF494) TK90_2277 PF01131 DNA topoisomerase TK90_2277 PF01751 Toprim domain TK90_2277 PF13368 Topoisomerase C-terminal repeat TK90_2278 PF01300 Telomere recombination TK90_2279 PF01218 Coproporphyrinogen III oxidase TK90_2280 PF00490 Delta-aminolevulinic acid dehydratase TK90_2281 PF08501 Shikimate dehydrogenase substrate binding domain TK90_2281 PF01488 Shikimate / quinate 5-dehydrogenase TK90_2281 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TK90_2282 PF00691 OmpA family TK90_2282 PF13488 Glycine zipper TK90_2283 PF01040 UbiA prenyltransferase family TK90_2284 PF00156 Phosphoribosyl transferase domain TK90_2286 PF04055 Radical SAM superfamily TK90_2286 PF06968 Biotin and Thiamin Synthesis associated domain TK90_2288 PF00155 Aminotransferase class I and II TK90_2290 PF04235 Protein of unknown function (DUF418) TK90_2291 PF04002 RadC-like JAB domain TK90_2292 PF00920 Dehydratase family TK90_2295 PF00583 Acetyltransferase (GNAT) family TK90_2295 PF00696 Amino acid kinase family TK90_2297 PF01258 Prokaryotic dksA/traR C4-type zinc finger TK90_2298 PF00149 Calcineurin-like phosphoesterase TK90_2299 PF01636 Phosphotransferase enzyme family TK90_2300 PF00483 Nucleotidyl transferase TK90_2303 PF08281 Sigma-70, region 4 TK90_2303 PF04542 Sigma-70 region 2 TK90_2311 PF03232 Ubiquinone biosynthesis protein COQ7 TK90_2312 PF00862 Sucrose synthase TK90_2312 PF00534 Glycosyl transferases group 1 TK90_2317 PF00873 AcrB/AcrD/AcrF family TK90_2318 PF00563 EAL domain TK90_2318 PF13426 PAS domain TK90_2318 PF00990 Diguanylate cyclase, GGDEF domain TK90_2319 PF01641 SelR domain TK90_2320 PF07690 Major Facilitator Superfamily TK90_2321 PF00873 AcrB/AcrD/AcrF family TK90_2322 PF13533 Biotin-lipoyl like TK90_2323 PF13409 Glutathione S-transferase, N-terminal domain TK90_2324 PF04262 Glutamate-cysteine ligase TK90_2325 PF03306 Alpha-acetolactate decarboxylase TK90_2327 PF17827 PrmC N-terminal domain TK90_2327 PF05175 Methyltransferase small domain TK90_2338 PF12848 ABC transporter TK90_2338 PF00005 ABC transporter TK90_2339 PF00072 Response regulator receiver domain TK90_2339 PF00990 Diguanylate cyclase, GGDEF domain TK90_2340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TK90_2340 PF03466 LysR substrate binding domain TK90_2342 PF00459 Inositol monophosphatase family TK90_2343 PF00211 Adenylate and Guanylate cyclase catalytic domain TK90_2346 PF08240 Alcohol dehydrogenase GroES-like domain TK90_2346 PF00107 Zinc-binding dehydrogenase TK90_2351 PF00196 Bacterial regulatory proteins, luxR family TK90_2351 PF00072 Response regulator receiver domain TK90_2352 PF00795 Carbon-nitrogen hydrolase TK90_2352 PF00583 Acetyltransferase (GNAT) family TK90_2355 PF02675 S-adenosylmethionine decarboxylase TK90_2356 PF02566 OsmC-like protein TK90_2357 PF13545 Crp-like helix-turn-helix domain TK90_2357 PF00027 Cyclic nucleotide-binding domain TK90_2358 PF00218 Indole-3-glycerol phosphate synthase TK90_2359 PF00591 Glycosyl transferase family, a/b domain TK90_2359 PF02885 Glycosyl transferase family, helical bundle domain TK90_2360 PF07690 Major Facilitator Superfamily TK90_2361 PF00117 Glutamine amidotransferase class-I TK90_2362 PF04715 Anthranilate synthase component I, N terminal region TK90_2362 PF00425 chorismate binding enzyme TK90_2363 PF13419 Haloacid dehalogenase-like hydrolase TK90_2364 PF00834 Ribulose-phosphate 3 epimerase family TK90_2365 PF00034 Cytochrome c TK90_2367 PF05175 Methyltransferase small domain TK90_2368 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TK90_2368 PF02222 ATP-grasp domain TK90_2369 PF00731 AIR carboxylase TK90_2373 PF01464 Transglycosylase SLT domain TK90_2373 PF14718 Soluble lytic murein transglycosylase L domain TK90_2374 PF00849 RNA pseudouridylate synthase TK90_2376 PF01367 5'-3' exonuclease, C-terminal SAM fold TK90_2376 PF01612 3'-5' exonuclease TK90_2376 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TK90_2376 PF00476 DNA polymerase family A TK90_2377 PF00056 lactate/malate dehydrogenase, NAD binding domain TK90_2377 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TK90_2378 PF00390 Malic enzyme, N-terminal domain TK90_2378 PF03949 Malic enzyme, NAD binding domain TK90_2379 PF01435 Peptidase family M48 TK90_2381 PF01197 Ribosomal protein L31 TK90_2382 PF04055 Radical SAM superfamily TK90_2382 PF18693 TRAM domain TK90_2382 PF00919 Uncharacterized protein family UPF0004 TK90_2383 PF01259 SAICAR synthetase TK90_2386 PF01116 Fructose-bisphosphate aldolase class-II TK90_2387 PF02887 Pyruvate kinase, alpha/beta domain TK90_2387 PF00224 Pyruvate kinase, barrel domain TK90_2388 PF00162 Phosphoglycerate kinase TK90_2389 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TK90_2389 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TK90_2390 PF00456 Transketolase, thiamine diphosphate binding domain TK90_2390 PF02780 Transketolase, C-terminal domain TK90_2390 PF02779 Transketolase, pyrimidine binding domain TK90_2391 PF00438 S-adenosylmethionine synthetase, N-terminal domain TK90_2391 PF02773 S-adenosylmethionine synthetase, C-terminal domain TK90_2391 PF02772 S-adenosylmethionine synthetase, central domain TK90_2392 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TK90_2392 PF05221 S-adenosyl-L-homocysteine hydrolase TK90_2393 PF02219 Methylenetetrahydrofolate reductase TK90_2394 PF04452 RNA methyltransferase TK90_2396 PF01584 CheW-like domain TK90_2396 PF00072 Response regulator receiver domain TK90_2396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2396 PF01627 Hpt domain TK90_2397 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TK90_2397 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TK90_2398 PF01584 CheW-like domain TK90_2399 PF00072 Response regulator receiver domain TK90_2400 PF00072 Response regulator receiver domain TK90_2401 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TK90_2401 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TK90_2402 PF02424 ApbE family TK90_2406 PF02622 Uncharacterized ACR, COG1678 TK90_2407 PF03652 Holliday junction resolvase TK90_2408 PF00156 Phosphoribosyl transferase domain TK90_2409 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TK90_2409 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TK90_2410 PF01979 Amidohydrolase family TK90_2411 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TK90_2411 PF00970 Oxidoreductase FAD-binding domain TK90_2411 PF00175 Oxidoreductase NAD-binding domain TK90_2412 PF00437 Type II/IV secretion system protein TK90_2413 PF00437 Type II/IV secretion system protein TK90_2414 PF00437 Type II/IV secretion system protein TK90_2415 PF01168 Alanine racemase, N-terminal domain TK90_2416 PF14748 Pyrroline-5-carboxylate reductase dimerisation TK90_2416 PF03807 NADP oxidoreductase coenzyme F420-dependent TK90_2417 PF00459 Inositol monophosphatase family TK90_2418 PF00293 NUDIX domain TK90_2420 PF13419 Haloacid dehalogenase-like hydrolase TK90_2422 PF06508 Queuosine biosynthesis protein QueC TK90_2426 PF02325 YGGT family TK90_2427 PF03618 Kinase/pyrophosphorylase TK90_2428 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TK90_2428 PF02896 PEP-utilising enzyme, TIM barrel domain TK90_2428 PF00391 PEP-utilising enzyme, mobile domain TK90_2429 PF18030 RimK PreATP-grasp domain TK90_2429 PF08443 RimK-like ATP-grasp domain TK90_2432 PF01475 Ferric uptake regulator family TK90_2436 PF00005 ABC transporter TK90_2439 PF02649 Type I GTP cyclohydrolase folE2 TK90_2440 PF01258 Prokaryotic dksA/traR C4-type zinc finger TK90_2441 PF07683 Cobalamin synthesis protein cobW C-terminal domain TK90_2441 PF02492 CobW/HypB/UreG, nucleotide-binding domain TK90_2447 PF01867 CRISPR associated protein Cas1 TK90_2448 PF18019 HD domain TK90_2449 PF09611 CRISPR-associated protein (Cas_Csy1) TK90_2450 PF09614 CRISPR-associated protein (Cas_Csy2) TK90_2451 PF09615 CRISPR-associated protein (Cas_Csy3) TK90_2452 PF09618 CRISPR-associated protein (Cas_Csy4) TK90_2453 PF00171 Aldehyde dehydrogenase family TK90_2454 PF01370 NAD dependent epimerase/dehydratase family TK90_2455 PF01966 HD domain TK90_2455 PF01743 Poly A polymerase head domain TK90_2455 PF12627 Probable RNA and SrmB- binding site of polymerase A TK90_2457 PF02321 Outer membrane efflux protein TK90_2461 PF04204 Homoserine O-succinyltransferase TK90_2463 PF02390 Putative methyltransferase TK90_2464 PF05690 Thiazole biosynthesis protein ThiG TK90_2465 PF02597 ThiS family TK90_2465 PF05690 Thiazole biosynthesis protein ThiG TK90_2466 PF01475 Ferric uptake regulator family TK90_2467 PF00270 DEAD/DEAH box helicase TK90_2467 PF00271 Helicase conserved C-terminal domain TK90_2468 PF00085 Thioredoxin TK90_2469 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TK90_2469 PF07497 Rho termination factor, RNA-binding domain TK90_2469 PF07498 Rho termination factor, N-terminal domain TK90_2472 PF06969 HemN C-terminal domain TK90_2472 PF04055 Radical SAM superfamily TK90_2473 PF01725 Ham1 family TK90_2474 PF03725 3' exoribonuclease family, domain 2 TK90_2474 PF01138 3' exoribonuclease family, domain 1 TK90_2475 PF03755 YicC-like family, N-terminal region TK90_2475 PF08340 Domain of unknown function (DUF1732) TK90_2477 PF00011 Hsp20/alpha crystallin family TK90_2478 PF01556 DnaJ C terminal domain TK90_2478 PF00226 DnaJ domain TK90_2479 PF13180 PDZ domain TK90_2479 PF00595 PDZ domain TK90_2480 PF02391 MoaE protein TK90_2481 PF02597 ThiS family TK90_2482 PF01967 MoaC family TK90_2484 PF00633 Helix-hairpin-helix motif TK90_2484 PF00730 HhH-GPD superfamily base excision DNA repair protein TK90_2484 PF14815 NUDIX domain TK90_2485 PF04362 Bacterial Fe(2+) trafficking TK90_2486 PF01327 Polypeptide deformylase TK90_2491 PF00293 NUDIX domain TK90_2492 PF00271 Helicase conserved C-terminal domain TK90_2492 PF04851 Type III restriction enzyme, res subunit TK90_2493 PF01370 NAD dependent epimerase/dehydratase family TK90_2496 PF02397 Bacterial sugar transferase TK90_2497 PF00512 His Kinase A (phospho-acceptor) domain TK90_2497 PF08447 PAS fold TK90_2497 PF00989 PAS fold TK90_2497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2498 PF00158 Sigma-54 interaction domain TK90_2498 PF00072 Response regulator receiver domain TK90_2498 PF02954 Bacterial regulatory protein, Fis family TK90_2500 PF01209 ubiE/COQ5 methyltransferase family TK90_2507 PF13614 AAA domain TK90_2509 PF01471 Putative peptidoglycan binding domain TK90_2509 PF13401 AAA domain TK90_2510 PF01522 Polysaccharide deacetylase TK90_2514 PF13439 Glycosyltransferase Family 4 TK90_2514 PF00534 Glycosyl transferases group 1 TK90_2515 PF00733 Asparagine synthase TK90_2515 PF13537 Glutamine amidotransferase domain TK90_2517 PF13439 Glycosyltransferase Family 4 TK90_2517 PF00534 Glycosyl transferases group 1 TK90_2518 PF13439 Glycosyltransferase Family 4 TK90_2518 PF00534 Glycosyl transferases group 1 TK90_2519 PF00501 AMP-binding enzyme TK90_2519 PF14535 AMP-binding enzyme C-terminal domain TK90_2521 PF00550 Phosphopantetheine attachment site TK90_2524 PF00535 Glycosyl transferase family 2 TK90_2526 PF00501 AMP-binding enzyme TK90_2526 PF00668 Condensation domain TK90_2526 PF07993 Male sterility protein TK90_2526 PF00550 Phosphopantetheine attachment site TK90_2526 PF13193 AMP-binding enzyme C-terminal domain TK90_2527 PF00005 ABC transporter TK90_2527 PF00664 ABC transporter transmembrane region TK90_2528 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TK90_2528 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TK90_2529 PF00501 AMP-binding enzyme TK90_2529 PF13193 AMP-binding enzyme C-terminal domain TK90_2542 PF02350 UDP-N-acetylglucosamine 2-epimerase TK90_2543 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TK90_2543 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TK90_2543 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TK90_2546 PF01209 ubiE/COQ5 methyltransferase family TK90_2551 PF13180 PDZ domain TK90_2552 PF00551 Formyl transferase TK90_2552 PF01842 ACT domain TK90_2553 PF02401 LytB protein TK90_2554 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TK90_2555 PF01252 Signal peptidase (SPase) II TK90_2556 PF06827 Zinc finger found in FPG and IleRS TK90_2556 PF00133 tRNA synthetases class I (I, L, M and V) TK90_2556 PF08264 Anticodon-binding domain of tRNA TK90_2557 PF06574 FAD synthetase TK90_2557 PF01687 Riboflavin kinase TK90_2558 PF03023 Lipid II flippase MurJ TK90_2559 PF00313 'Cold-shock' DNA-binding domain TK90_2561 PF05127 Helicase TK90_2561 PF13718 GNAT acetyltransferase 2 TK90_2561 PF17176 tRNA-binding domain TK90_2562 PF00672 HAMP domain TK90_2562 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TK90_2564 PF00582 Universal stress protein family TK90_2565 PF03600 Citrate transporter TK90_2565 PF02080 TrkA-C domain TK90_2566 PF00485 Phosphoribulokinase / Uridine kinase family TK90_2569 PF00248 Aldo/keto reductase family TK90_2570 PF01026 TatD related DNase TK90_2571 PF00899 ThiF family TK90_2573 PF01553 Acyltransferase TK90_2573 PF00501 AMP-binding enzyme TK90_2574 PF05746 DALR anticodon binding domain TK90_2574 PF02092 Glycyl-tRNA synthetase beta subunit TK90_2575 PF02091 Glycyl-tRNA synthetase alpha subunit TK90_2576 PF16916 Dimerisation domain of Zinc Transporter TK90_2576 PF01545 Cation efflux family TK90_2577 PF00120 Glutamine synthetase, catalytic domain TK90_2577 PF03951 Glutamine synthetase, beta-Grasp domain TK90_2579 PF01171 PP-loop family TK90_2581 PF00561 alpha/beta hydrolase fold TK90_2582 PF02580 D-Tyr-tRNA(Tyr) deacylase TK90_2584 PF01380 SIS domain TK90_2585 PF12804 MobA-like NTP transferase domain TK90_2585 PF14602 Hexapeptide repeat of succinyl-transferase TK90_2585 PF00132 Bacterial transferase hexapeptide (six repeats) TK90_2586 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TK90_2586 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TK90_2587 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TK90_2587 PF02874 ATP synthase alpha/beta family, beta-barrel domain TK90_2588 PF00231 ATP synthase TK90_2589 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TK90_2589 PF02874 ATP synthase alpha/beta family, beta-barrel domain TK90_2589 PF00306 ATP synthase alpha/beta chain, C terminal domain TK90_2590 PF00213 ATP synthase delta (OSCP) subunit TK90_2591 PF00430 ATP synthase B/B' CF(0) TK90_2592 PF00137 ATP synthase subunit C TK90_2593 PF00119 ATP synthase A chain TK90_2595 PF02195 ParB-like nuclease domain TK90_2595 PF17762 HTH domain found in ParB protein TK90_2596 PF13614 AAA domain TK90_2597 PF02527 rRNA small subunit methyltransferase G TK90_2598 PF13932 GidA associated domain TK90_2598 PF01134 Glucose inhibited division protein A TK90_2599 PF01926 50S ribosome-binding GTPase TK90_2599 PF12631 MnmE helical domain TK90_2599 PF10396 GTP-binding protein TrmE N-terminus TK90_2600 PF14849 YidC periplasmic domain TK90_2600 PF02096 60Kd inner membrane protein TK90_2601 PF01809 Putative membrane protein insertion efficiency factor TK90_2602 PF00825 Ribonuclease P TK90_2603 PF00468 Ribosomal protein L34 TK90_2605 PF00436 Single-strand binding protein family TK90_2687 PF08448 PAS fold TK90_2687 PF00990 Diguanylate cyclase, GGDEF domain TK90_2687 PF00563 EAL domain TK90_2689 PF07282 Putative transposase DNA-binding domain TK90_2689 PF01385 Probable transposase TK90_2689 PF12323 Helix-turn-helix domain TK90_2706 PF13361 UvrD-like helicase C-terminal domain TK90_2706 PF00580 UvrD/REP helicase N-terminal domain TK90_2717 PF00692 dUTPase TK90_2736 PF12323 Helix-turn-helix domain TK90_2753 PF00082 Subtilase family TK90_2756 PF16200 C-terminal region of band_7 TK90_2756 PF01145 SPFH domain / Band 7 family TK90_2768 PF00204 DNA gyrase B TK90_2768 PF00986 DNA gyrase B subunit, carboxyl terminus TK90_2768 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2768 PF01751 Toprim domain TK90_2770 PF00521 DNA gyrase/topoisomerase IV, subunit A TK90_2770 PF03989 DNA gyrase C-terminal domain, beta-propeller TK90_2774 PF13614 AAA domain TK90_2775 PF17762 HTH domain found in ParB protein TK90_2775 PF02195 ParB-like nuclease domain TK90_2777 PF02899 Phage integrase, N-terminal SAM-like domain TK90_2777 PF00589 Phage integrase family TK90_2779 PF00313 'Cold-shock' DNA-binding domain TK90_2780 PF00436 Single-strand binding protein family TK90_2782 PF10134 Replication initiator protein A TK90_2792 PF04851 Type III restriction enzyme, res subunit TK90_2792 PF00271 Helicase conserved C-terminal domain TK90_2802 PF00501 AMP-binding enzyme TK90_2802 PF01553 Acyltransferase TK90_2806 PF00795 Carbon-nitrogen hydrolase TK90_2808 PF07689 KaiB domain TK90_2808 PF00512 His Kinase A (phospho-acceptor) domain TK90_2808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TK90_2811 PF17768 RecJ OB domain TK90_2811 PF02272 DHHA1 domain TK90_2811 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TK90_2811 PF01368 DHH family TK90_2813 PF17191 RecG wedge domain TK90_2813 PF00270 DEAD/DEAH box helicase TK90_2813 PF00271 Helicase conserved C-terminal domain TK90_2817 PF00437 Type II/IV secretion system protein TK90_2826 PF03743 Bacterial conjugation TrbI-like protein TK90_2827 PF01464 Transglycosylase SLT domain TK90_2827 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain TK90_2833 PF00437 Type II/IV secretion system protein TK90_2840 PF00589 Phage integrase family TK90_2840 PF02899 Phage integrase, N-terminal SAM-like domain TK90_2844 PF02599 Global regulator protein family TK90_2848 PF00580 UvrD/REP helicase N-terminal domain TK90_2848 PF13361 UvrD-like helicase C-terminal domain TK90_2855 PF00437 Type II/IV secretion system protein TK90_2860 PF00437 Type II/IV secretion system protein TK90_2866 PF17151 Periplasmic sensor domain TK90_2866 PF00990 Diguanylate cyclase, GGDEF domain TK90_2879 PF13614 AAA domain TK90_2880 PF02195 ParB-like nuclease domain TK90_2885 PF00436 Single-strand binding protein family TK90_2887 PF13276 HTH-like domain TK90_2887 PF13333 Integrase core domain TK90_2887 PF00665 Integrase core domain