TK90_0001 SM00382 ATPases associated with a variety of cellular activities TK90_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain TK90_0002 SM00480 DNA polymerase III beta subunit TK90_0004 SM00387 Histidine kinase-like ATPases TK90_0004 SM00433 TopoisomeraseII TK90_0013 SM00448 cheY-homologous receiver domain TK90_0013 SM00850 LytTr DNA-binding domain TK90_0025 SM00347 helix_turn_helix multiple antibiotic resistance protein TK90_0034 SM00267 diguanylate cyclase TK90_0044 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs TK90_0044 SM00474 3'-5' exonuclease TK90_0044 SM00475 5'-3' exonuclease TK90_0044 SM00482 DNA polymerase A domain TK90_0049 SM00387 Histidine kinase-like ATPases TK90_0049 SM00388 His Kinase A (phosphoacceptor) domain TK90_0050 SM00382 ATPases associated with a variety of cellular activities TK90_0050 SM00448 cheY-homologous receiver domain TK90_0059 SM00926 Molybdopterin oxidoreductase Fe4S4 domain TK90_0061 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_0072 SM00257 Lysin motif TK90_0073 SM00331 Sigma factor PP2C-like phosphatases TK90_0073 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain TK90_0080 SM00849 Metallo-beta-lactamase superfamily TK90_0097 SM00861 Transketolase, pyrimidine binding domain TK90_0100 SM00267 diguanylate cyclase TK90_0100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_0115 SM00382 ATPases associated with a variety of cellular activities TK90_0115 SM01086 C-terminal, D2-small domain, of ClpB protein TK90_0135 SM00220 Serine/Threonine protein kinases, catalytic domain TK90_0135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_0136 SM00240 Forkhead associated domain TK90_0138 SM00267 diguanylate cyclase TK90_0143 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_0144 SM00926 Molybdopterin oxidoreductase Fe4S4 domain TK90_0150 SM00382 ATPases associated with a variety of cellular activities TK90_0155 SM01207 TK90_0155 TK90_0169 SM00382 ATPases associated with a variety of cellular activities TK90_0170 SM00382 ATPases associated with a variety of cellular activities TK90_0170 SM00962 SRP54-type protein, GTPase domain TK90_0170 SM00963 SRP54-type protein, helical bundle domain TK90_0177 SM01209 TK90_0177 TK90_0177 SM01210 TK90_0177 TK90_0178 SM00798 AICARFT/IMPCHase bienzyme TK90_0178 SM00851 MGS-like domain TK90_0182 SM01018 B12 binding domain TK90_0193 SM00905 Dihydroneopterin aldolase TK90_0195 SM00938 Nitrogen regulatory protein P-II TK90_0197 SM00382 ATPases associated with a variety of cellular activities TK90_0224 SM00530 Helix-turn-helix XRE-family like proteins TK90_0242 SM00448 cheY-homologous receiver domain TK90_0242 SM00862 Transcriptional regulatory protein, C terminal TK90_0243 SM00387 Histidine kinase-like ATPases TK90_0245 SM00382 ATPases associated with a variety of cellular activities TK90_0245 SM00487 DEAD-like helicases superfamily TK90_0245 SM00490 helicase superfamily c-terminal domain TK90_0245 SM00847 Helicase associated domain (HA2) Add an annotation TK90_0247 SM00836 DALR anticodon binding domain TK90_0247 SM01016 Arginyl tRNA synthetase N terminal dom TK90_0248 SM00487 DEAD-like helicases superfamily TK90_0248 SM00490 helicase superfamily c-terminal domain TK90_0251 SM01002 Alanine dehydrogenase/PNT, C-terminal domain TK90_0251 SM01003 Alanine dehydrogenase/PNT, N-terminal domain TK90_0252 SM00507 HNH nucleases TK90_0254 SM00852 Probable molybdopterin binding domain TK90_0255 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. TK90_0256 SM00305 Hint (Hedgehog/Intein) domain C-terminal region TK90_0256 SM00306 Hint (Hedgehog/Intein) domain N-terminal region TK90_0264 SM00400 zinc finger TK90_0264 SM00493 TK90_0264 TK90_0264 SM00766 DNA primase DnaG DnaB-binding TK90_0267 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_0279 SM00965 Secretin and TonB N terminus short domain TK90_0291 SM00883 Chaperonin 10 Kd subunit TK90_0297 SM00382 ATPases associated with a variety of cellular activities TK90_0310 SM00382 ATPases associated with a variety of cellular activities TK90_0324 SM00731 SprT homologues. TK90_0326 SM00474 3'-5' exonuclease TK90_0333 SM00845 GatB domain TK90_0340 SM00937 TK90_0340 TK90_0342 SM00028 Tetratricopeptide repeats TK90_0345 SM01400 TK90_0345 TK90_0350 SM00479 TK90_0350 TK90_0356 SM00091 PAS domain TK90_0356 SM00267 diguanylate cyclase TK90_0361 SM00464 Found in ATP-dependent protease La (LON) TK90_0369 SM00382 ATPases associated with a variety of cellular activities TK90_0386 SM00382 ATPases associated with a variety of cellular activities TK90_0397 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_0400 SM00859 Semialdehyde dehydrogenase, NAD binding domain TK90_0405 SM00363 S4 RNA-binding domain TK90_0408 SM00849 Metallo-beta-lactamase superfamily TK90_0410 SM01130 TK90_0410 TK90_0413 SM00670 Large family of predicted nucleotide-binding domains TK90_0415 SM00861 Transketolase, pyrimidine binding domain TK90_0423 SM00382 ATPases associated with a variety of cellular activities TK90_0424 SM01091 Transporter associated domain TK90_0426 SM00382 ATPases associated with a variety of cellular activities TK90_0426 SM00962 SRP54-type protein, GTPase domain TK90_0426 SM00963 SRP54-type protein, helical bundle domain TK90_0435 SM00387 Histidine kinase-like ATPases TK90_0448 SM00671 Sel1-like repeats. TK90_0461 SM00271 DnaJ molecular chaperone homology domain TK90_0462 SM00052 Putative diguanylate phosphodiesterase TK90_0462 SM00267 diguanylate cyclase TK90_0465 SM00841 Elongation factor P, C-terminal TK90_0465 SM01185 TK90_0465 TK90_0472 SM00822 TK90_0472 TK90_0475 SM00825 Beta-ketoacyl synthase TK90_0487 SM00271 DnaJ molecular chaperone homology domain TK90_0489 SM00052 Putative diguanylate phosphodiesterase TK90_0489 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_0489 SM00091 PAS domain TK90_0489 SM00267 diguanylate cyclase TK90_0493 SM00257 Lysin motif TK90_0493 SM00646 TK90_0493 TK90_0494 SM00853 MutL C terminal dimerisation domain TK90_0494 SM01340 TK90_0494 TK90_0498 SM00257 Lysin motif TK90_0501 SM00479 TK90_0501 TK90_0512 SM00834 Putative regulatory protein TK90_0517 SM00052 Putative diguanylate phosphodiesterase TK90_0517 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_0517 SM00091 PAS domain TK90_0517 SM00267 diguanylate cyclase TK90_0520 SM00831 Cation transporter/ATPase, N-terminus TK90_0521 SM00052 Putative diguanylate phosphodiesterase TK90_0521 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_0521 SM00267 diguanylate cyclase TK90_0529 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_0529 SM00091 PAS domain TK90_0529 SM00267 diguanylate cyclase TK90_0530 SM00052 Putative diguanylate phosphodiesterase TK90_0530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_0530 SM00267 diguanylate cyclase TK90_0531 SM00155 Phospholipase D. Active site motifs. TK90_0532 SM00434 DNA Topoisomerase IV TK90_0533 SM00052 Putative diguanylate phosphodiesterase TK90_0533 SM00267 diguanylate cyclase TK90_0533 SM00448 cheY-homologous receiver domain TK90_0534 SM00091 PAS domain TK90_0534 SM00387 Histidine kinase-like ATPases TK90_0534 SM00388 His Kinase A (phosphoacceptor) domain TK90_0534 SM00448 cheY-homologous receiver domain TK90_0536 SM00849 Metallo-beta-lactamase superfamily TK90_0537 SM00387 Histidine kinase-like ATPases TK90_0537 SM00388 His Kinase A (phosphoacceptor) domain TK90_0538 SM00382 ATPases associated with a variety of cellular activities TK90_0538 SM00448 cheY-homologous receiver domain TK90_0543 SM00849 Metallo-beta-lactamase superfamily TK90_0546 SM00450 Rhodanese Homology Domain TK90_0561 SM00382 ATPases associated with a variety of cellular activities TK90_0574 SM00382 ATPases associated with a variety of cellular activities TK90_0574 SM00994 ClpX C4-type zinc finger TK90_0574 SM01086 C-terminal, D2-small domain, of ClpB protein TK90_0575 SM00382 ATPases associated with a variety of cellular activities TK90_0575 SM00464 Found in ATP-dependent protease La (LON) TK90_0576 SM00411 bacterial (prokaryotic) histone like domain TK90_0580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TK90_0602 SM00382 ATPases associated with a variety of cellular activities TK90_0604 SM00267 diguanylate cyclase TK90_0611 SM00984 UDP binding domain TK90_0617 SM00382 ATPases associated with a variety of cellular activities TK90_0620 SM00226 Low molecular weight phosphatase family TK90_0630 SM00450 Rhodanese Homology Domain TK90_0641 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_0644 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_0652 SM00327 von Willebrand factor (vWF) type A domain TK90_0656 SM00382 ATPases associated with a variety of cellular activities TK90_0658 SM00382 ATPases associated with a variety of cellular activities TK90_0664 SM01012 TK90_0664 TK90_0667 SM00382 ATPases associated with a variety of cellular activities TK90_0670 SM00926 Molybdopterin oxidoreductase Fe4S4 domain TK90_0676 SM00840 TK90_0676 TK90_0678 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_0678 SM00091 PAS domain TK90_0678 SM00387 Histidine kinase-like ATPases TK90_0678 SM00388 His Kinase A (phosphoacceptor) domain TK90_0679 SM00448 cheY-homologous receiver domain TK90_0680 SM00052 Putative diguanylate phosphodiesterase TK90_0680 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_0680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_0680 SM00091 PAS domain TK90_0680 SM00267 diguanylate cyclase TK90_0680 SM00448 cheY-homologous receiver domain TK90_0685 SM00450 Rhodanese Homology Domain TK90_0688 SM00981 TK90_0688 TK90_0690 SM00382 ATPases associated with a variety of cellular activities TK90_0695 SM00062 Bacterial periplasmic substrate-binding proteins TK90_0698 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain TK90_0699 SM00851 MGS-like domain TK90_0699 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TK90_0701 SM01103 TK90_0701 TK90_0703 SM00382 ATPases associated with a variety of cellular activities TK90_0713 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TK90_0714 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TK90_0724 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_0724 SM00322 K homology RNA-binding domain TK90_0728 SM01387 TK90_0728 TK90_0729 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_0729 SM00322 K homology RNA-binding domain TK90_0731 SM00562 TK90_0731 TK90_0733 SM00028 Tetratricopeptide repeats TK90_0737 SM00564 beta-propeller repeat TK90_0738 SM00382 ATPases associated with a variety of cellular activities TK90_0747 SM00287 Bacterial SH3 domain homologues TK90_0756 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TK90_0756 SM00450 Rhodanese Homology Domain TK90_0757 SM00849 Metallo-beta-lactamase superfamily TK90_0760 SM00100 Cyclic nucleotide-monophosphate binding domain TK90_0765 SM00867 YceI-like domain TK90_0773 SM00028 Tetratricopeptide repeats TK90_0784 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TK90_0784 SM00534 ATPase domain of DNA mismatch repair MUTS family TK90_0787 SM00100 Cyclic nucleotide-monophosphate binding domain TK90_0787 SM00419 helix_turn_helix, cAMP Regulatory protein TK90_0799 SM00382 ATPases associated with a variety of cellular activities TK90_0816 SM00028 Tetratricopeptide repeats TK90_0816 SM01043 Bacterial transcriptional activator domain TK90_0822 SM00422 helix_turn_helix, mercury resistance TK90_0833 SM00271 DnaJ molecular chaperone homology domain TK90_0837 SM00382 ATPases associated with a variety of cellular activities TK90_0838 SM00267 diguanylate cyclase TK90_0839 SM00341 Helicase and RNase D C-terminal TK90_0839 SM00487 DEAD-like helicases superfamily TK90_0839 SM00490 helicase superfamily c-terminal domain TK90_0839 SM00956 TK90_0839 TK90_0848 SM00382 ATPases associated with a variety of cellular activities TK90_0848 SM00448 cheY-homologous receiver domain TK90_0849 SM00387 Histidine kinase-like ATPases TK90_0849 SM00388 His Kinase A (phosphoacceptor) domain TK90_0859 SM00961 Ribulose bisphosphate carboxylase, small chain TK90_0864 SM00877 TK90_0864 TK90_0865 SM00877 TK90_0865 TK90_0866 SM00877 TK90_0866 TK90_0872 SM00327 von Willebrand factor (vWF) type A domain TK90_0876 SM00587 ZnF_C4 abd HLH domain containing kinases domain TK90_0877 SM00382 ATPases associated with a variety of cellular activities TK90_0878 SM00938 Nitrogen regulatory protein P-II TK90_0883 SM00831 Cation transporter/ATPase, N-terminus TK90_0889 SM01219 TK90_0889 TK90_0906 SM00155 Phospholipase D. Active site motifs. TK90_0911 SM00849 Metallo-beta-lactamase superfamily TK90_0912 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TK90_0917 SM00873 B3/4 domain TK90_0917 SM00874 tRNA synthetase B5 domain TK90_0917 SM00896 Ferredoxin-fold anticodon binding domain TK90_0918 SM00411 bacterial (prokaryotic) histone like domain TK90_0919 SM00422 helix_turn_helix, mercury resistance TK90_0923 SM00858 TK90_0923 TK90_0924 SM00260 Two component signalling adaptor domain TK90_0924 SM00448 cheY-homologous receiver domain TK90_0925 SM00138 Methyltransferase, chemotaxis proteins TK90_0934 SM00047 Lysozyme subfamily 2 TK90_0942 SM00855 Phosphoglycerate mutase family TK90_0949 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TK90_0949 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_0954 SM00382 ATPases associated with a variety of cellular activities TK90_0958 SM00091 PAS domain TK90_0958 SM00387 Histidine kinase-like ATPases TK90_0958 SM00388 His Kinase A (phosphoacceptor) domain TK90_0959 SM00448 cheY-homologous receiver domain TK90_0959 SM00862 Transcriptional regulatory protein, C terminal TK90_0960 SM00849 Metallo-beta-lactamase superfamily TK90_0961 SM01116 TK90_0961 TK90_0962 SM00382 ATPases associated with a variety of cellular activities TK90_0965 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_0965 SM00382 ATPases associated with a variety of cellular activities TK90_0968 SM00382 ATPases associated with a variety of cellular activities TK90_0987 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_0987 SM00387 Histidine kinase-like ATPases TK90_0987 SM00388 His Kinase A (phosphoacceptor) domain TK90_0988 SM00382 ATPases associated with a variety of cellular activities TK90_0988 SM00448 cheY-homologous receiver domain TK90_0996 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_0996 SM00267 diguanylate cyclase TK90_1017 SM00382 ATPases associated with a variety of cellular activities TK90_1024 SM00891 ERCC4 domain TK90_1026 SM00052 Putative diguanylate phosphodiesterase TK90_1026 SM00091 PAS domain TK90_1026 SM00267 diguanylate cyclase TK90_1027 SM00052 Putative diguanylate phosphodiesterase TK90_1027 SM00091 PAS domain TK90_1027 SM00267 diguanylate cyclase TK90_1028 SM00487 DEAD-like helicases superfamily TK90_1028 SM00490 helicase superfamily c-terminal domain TK90_1029 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TK90_1029 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_1033 SM00849 Metallo-beta-lactamase superfamily TK90_1035 SM00450 Rhodanese Homology Domain TK90_1037 SM00460 Transglutaminase/protease-like homologues TK90_1041 SM00450 Rhodanese Homology Domain TK90_1043 SM00849 Metallo-beta-lactamase superfamily TK90_1046 SM00487 DEAD-like helicases superfamily TK90_1046 SM00490 helicase superfamily c-terminal domain TK90_1052 SM00954 Region found in RelA / SpoT proteins TK90_1056 SM01152 TK90_1056 TK90_1059 SM00506 Appr-1"-p processing enzyme TK90_1060 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_1067 SM00382 ATPases associated with a variety of cellular activities TK90_1075 SM00091 PAS domain TK90_1075 SM00267 diguanylate cyclase TK90_1075 SM01079 TK90_1075 TK90_1079 SM00382 ATPases associated with a variety of cellular activities TK90_1083 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TK90_1090 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_1091 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1091 SM00091 PAS domain TK90_1091 SM00267 diguanylate cyclase TK90_1095 SM00481 DNA polymerase alpha chain like domain TK90_1099 SM00052 Putative diguanylate phosphodiesterase TK90_1105 SM00530 Helix-turn-helix XRE-family like proteins TK90_1109 SM00530 Helix-turn-helix XRE-family like proteins TK90_1119 SM00267 diguanylate cyclase TK90_1120 SM00382 ATPases associated with a variety of cellular activities TK90_1131 SM00671 Sel1-like repeats. TK90_1146 SM00155 Phospholipase D. Active site motifs. TK90_1153 SM01211 TK90_1153 TK90_1155 SM00382 ATPases associated with a variety of cellular activities TK90_1156 SM00382 ATPases associated with a variety of cellular activities TK90_1161 SM00382 ATPases associated with a variety of cellular activities TK90_1173 SM00382 ATPases associated with a variety of cellular activities TK90_1173 SM00962 SRP54-type protein, GTPase domain TK90_1176 SM00448 cheY-homologous receiver domain TK90_1178 SM00073 Histidine Phosphotransfer domain TK90_1178 SM00260 Two component signalling adaptor domain TK90_1178 SM00387 Histidine kinase-like ATPases TK90_1178 SM01231 TK90_1178 TK90_1179 SM00448 cheY-homologous receiver domain TK90_1183 SM00260 Two component signalling adaptor domain TK90_1184 SM00260 Two component signalling adaptor domain TK90_1189 SM00226 Low molecular weight phosphatase family TK90_1190 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_1191 SM00363 S4 RNA-binding domain TK90_1195 SM00487 DEAD-like helicases superfamily TK90_1195 SM00490 helicase superfamily c-terminal domain TK90_1195 SM00982 TK90_1195 TK90_1195 SM01058 CarD-like/TRCF domain TK90_1200 SM00382 ATPases associated with a variety of cellular activities TK90_1202 SM00849 Metallo-beta-lactamase superfamily TK90_1204 SM00434 DNA Topoisomerase IV TK90_1207 SM00830 Chorismate mutase type II TK90_1212 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_1213 SM00411 bacterial (prokaryotic) histone like domain TK90_1217 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family TK90_1218 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TK90_1220 SM01160 TK90_1220 TK90_1222 SM00992 Hemimethylated DNA-binding protein YccV like TK90_1224 SM01007 Class II Aldolase and Adducin N-terminal domain TK90_1242 SM00487 DEAD-like helicases superfamily TK90_1242 SM00490 helicase superfamily c-terminal domain TK90_1248 SM00421 helix_turn_helix, Lux Regulon TK90_1257 SM00825 Beta-ketoacyl synthase TK90_1259 SM00822 TK90_1259 TK90_1260 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. TK90_1261 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_1262 SM00382 ATPases associated with a variety of cellular activities TK90_1262 SM01086 C-terminal, D2-small domain, of ClpB protein TK90_1264 SM01329 TK90_1264 TK90_1270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_1271 SM00052 Putative diguanylate phosphodiesterase TK90_1271 SM00267 diguanylate cyclase TK90_1274 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. TK90_1285 SM00257 Lysin motif TK90_1289 SM00463 Small MutS-related domain TK90_1292 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1292 SM00091 PAS domain TK90_1295 SM00487 DEAD-like helicases superfamily TK90_1295 SM00491 TK90_1295 TK90_1304 SM01323 TK90_1304 TK90_1309 SM00052 Putative diguanylate phosphodiesterase TK90_1309 SM00267 diguanylate cyclase TK90_1309 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_1314 SM00421 helix_turn_helix, Lux Regulon TK90_1316 SM00382 ATPases associated with a variety of cellular activities TK90_1321 SM00382 ATPases associated with a variety of cellular activities TK90_1323 SM00382 ATPases associated with a variety of cellular activities TK90_1325 SM00460 Transglutaminase/protease-like homologues TK90_1340 SM00859 Semialdehyde dehydrogenase, NAD binding domain TK90_1341 SM01329 TK90_1341 TK90_1347 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TK90_1353 SM00382 ATPases associated with a variety of cellular activities TK90_1356 SM00267 diguanylate cyclase TK90_1363 SM01117 TK90_1363 TK90_1364 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_1372 SM00267 diguanylate cyclase TK90_1372 SM00448 cheY-homologous receiver domain TK90_1375 SM00052 Putative diguanylate phosphodiesterase TK90_1375 SM00267 diguanylate cyclase TK90_1378 SM00382 ATPases associated with a variety of cellular activities TK90_1379 SM00829 Enoylreductase TK90_1380 SM00450 Rhodanese Homology Domain TK90_1380 SM00981 TK90_1380 TK90_1387 SM00267 diguanylate cyclase TK90_1390 SM00100 Cyclic nucleotide-monophosphate binding domain TK90_1390 SM00419 helix_turn_helix, cAMP Regulatory protein TK90_1402 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1402 SM00091 PAS domain TK90_1402 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TK90_1403 SM00052 Putative diguanylate phosphodiesterase TK90_1410 SM00404 Protein tyrosine phosphatase, catalytic domain motif TK90_1425 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_1425 SM00091 PAS domain TK90_1425 SM00267 diguanylate cyclase TK90_1426 SM00267 diguanylate cyclase TK90_1429 SM00014 Acid phosphatase homologues TK90_1436 SM01321 TK90_1436 TK90_1453 SM00855 Phosphoglycerate mutase family TK90_1462 SM00382 ATPases associated with a variety of cellular activities TK90_1470 SM01192 TK90_1470 TK90_1470 SM01193 TK90_1470 TK90_1473 SM00331 Sigma factor PP2C-like phosphatases TK90_1474 SM00267 diguanylate cyclase TK90_1477 SM00062 Bacterial periplasmic substrate-binding proteins TK90_1478 SM00977 TilS substrate C-terminal domain TK90_1480 SM00481 DNA polymerase alpha chain like domain TK90_1488 SM00935 Outer membrane protein (OmpH-like) TK90_1490 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TK90_1499 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_1504 SM00052 Putative diguanylate phosphodiesterase TK90_1504 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1504 SM00091 PAS domain TK90_1504 SM00267 diguanylate cyclase TK90_1504 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_1511 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_1515 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_1518 SM00704 CDGSH-type zinc finger. Function unknown. TK90_1530 SM00642 Alpha-amylase domain TK90_1535 SM00966 SpoVT / AbrB like domain TK90_1541 SM00530 Helix-turn-helix XRE-family like proteins TK90_1550 SM00984 UDP binding domain TK90_1552 SM01321 TK90_1552 TK90_1554 SM01321 TK90_1554 TK90_1556 SM01321 TK90_1556 TK90_1558 SM01321 TK90_1558 TK90_1559 SM00343 zinc finger TK90_1567 SM00966 SpoVT / AbrB like domain TK90_1572 SM00984 UDP binding domain TK90_1574 SM01321 TK90_1574 TK90_1575 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TK90_1575 SM00292 breast cancer carboxy-terminal domain TK90_1575 SM00532 Ligase N family TK90_1576 SM00771 ZipA, C-terminal domain (FtsZ-binding) TK90_1582 SM00062 Bacterial periplasmic substrate-binding proteins TK90_1584 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_1584 SM00331 Sigma factor PP2C-like phosphatases TK90_1592 SM00387 Histidine kinase-like ATPases TK90_1593 SM00052 Putative diguanylate phosphodiesterase TK90_1593 SM00091 PAS domain TK90_1593 SM00267 diguanylate cyclase TK90_1593 SM00448 cheY-homologous receiver domain TK90_1594 SM00052 Putative diguanylate phosphodiesterase TK90_1594 SM00062 Bacterial periplasmic substrate-binding proteins TK90_1594 SM00091 PAS domain TK90_1594 SM00267 diguanylate cyclase TK90_1598 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TK90_1598 SM00465 GIY-YIG type nucleases (URI domain) TK90_1599 SM00986 Uracil DNA glycosylase superfamily TK90_1599 SM00987 UreE urease accessory protein, C-terminal domain TK90_1600 SM01118 TK90_1600 TK90_1605 SM00878 Biotin carboxylase C-terminal domain TK90_1608 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TK90_1609 SM00248 ankyrin repeats TK90_1614 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TK90_1616 SM00382 ATPases associated with a variety of cellular activities TK90_1619 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TK90_1619 SM00534 ATPase domain of DNA mismatch repair MUTS family TK90_1629 SM00382 ATPases associated with a variety of cellular activities TK90_1633 SM00530 Helix-turn-helix XRE-family like proteins TK90_1637 SM00487 DEAD-like helicases superfamily TK90_1643 SM00342 helix_turn_helix, arabinose operon control protein TK90_1647 SM00450 Rhodanese Homology Domain TK90_1656 SM00450 Rhodanese Homology Domain TK90_1656 SM00849 Metallo-beta-lactamase superfamily TK90_1659 SM00877 TK90_1659 TK90_1663 SM00267 diguanylate cyclase TK90_1667 SM00052 Putative diguanylate phosphodiesterase TK90_1667 SM00267 diguanylate cyclase TK90_1668 SM00507 HNH nucleases TK90_1685 SM01321 TK90_1685 TK90_1689 SM00382 ATPases associated with a variety of cellular activities TK90_1690 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_1690 SM00924 MgtE intracellular N domain TK90_1691 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_1691 SM00924 MgtE intracellular N domain TK90_1700 SM01321 TK90_1700 TK90_1708 SM00917 LeuA allosteric (dimerisation) domain TK90_1709 SM00344 helix_turn_helix ASNC type TK90_1711 SM00382 ATPases associated with a variety of cellular activities TK90_1714 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1714 SM00091 PAS domain TK90_1715 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1715 SM00091 PAS domain TK90_1715 SM00267 diguanylate cyclase TK90_1735 SM00478 endonuclease III TK90_1735 SM00525 TK90_1735 TK90_1742 SM00450 Rhodanese Homology Domain TK90_1744 SM00450 Rhodanese Homology Domain TK90_1750 SM00062 Bacterial periplasmic substrate-binding proteins TK90_1750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_1750 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1750 SM00091 PAS domain TK90_1750 SM00267 diguanylate cyclase TK90_1752 SM00478 endonuclease III TK90_1753 SM00363 S4 RNA-binding domain TK90_1754 SM00852 Probable molybdopterin binding domain TK90_1761 SM00887 Ethylbenzene dehydrogenase TK90_1775 SM00671 Sel1-like repeats. TK90_1777 SM00986 Uracil DNA glycosylase superfamily TK90_1777 SM00987 UreE urease accessory protein, C-terminal domain TK90_1788 SM01007 Class II Aldolase and Adducin N-terminal domain TK90_1794 SM00900 TK90_1794 TK90_1811 SM01321 TK90_1811 TK90_1812 SM01321 TK90_1812 TK90_1813 SM01321 TK90_1813 TK90_1821 SM01011 Aminopeptidase P, N-terminal domain TK90_1827 SM00843 TK90_1827 TK90_1847 SM00479 TK90_1847 TK90_1853 SM00493 TK90_1853 TK90_1855 SM00382 ATPases associated with a variety of cellular activities TK90_1862 SM00100 Cyclic nucleotide-monophosphate binding domain TK90_1862 SM00419 helix_turn_helix, cAMP Regulatory protein TK90_1863 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_1866 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_1867 SM00479 TK90_1867 TK90_1870 SM00052 Putative diguanylate phosphodiesterase TK90_1870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TK90_1870 SM00091 PAS domain TK90_1870 SM00267 diguanylate cyclase TK90_1897 SM00014 Acid phosphatase homologues TK90_1899 SM00563 Phosphate acyltransferases TK90_1901 SM00450 Rhodanese Homology Domain TK90_1906 SM00849 Metallo-beta-lactamase superfamily TK90_1906 SM01027 Beta-Casp domain TK90_1910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_1911 SM01034 Sensors of blue-light using FAD TK90_1913 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_1913 SM01240 TK90_1913 TK90_1928 SM00155 Phospholipase D. Active site motifs. TK90_1930 SM01005 Alanine racemase, C-terminal domain TK90_1931 SM00382 ATPases associated with a variety of cellular activities TK90_1937 SM00967 RNA 2'-O ribose methyltransferase substrate binding TK90_1938 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_1938 SM00357 Cold shock protein domain TK90_1938 SM00955 TK90_1938 TK90_1939 SM00788 Adenylosuccinate synthetase TK90_1941 SM00244 prohibitin homologues TK90_1942 SM00244 prohibitin homologues TK90_1947 SM00358 Double-stranded RNA binding motif TK90_1947 SM00535 Ribonuclease III family TK90_1950 SM00838 Elongation factor G C-terminus TK90_1952 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TK90_1960 SM00849 Metallo-beta-lactamase superfamily TK90_1966 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_1970 SM00936 Penicillin-binding protein 5, C-terminal domain TK90_1980 SM00650 Ribosomal RNA adenine dimethylases TK90_1989 SM00316 Ribosomal protein S1-like RNA-binding domain TK90_1994 SM00052 Putative diguanylate phosphodiesterase TK90_1994 SM00267 diguanylate cyclase TK90_1998 SM00052 Putative diguanylate phosphodiesterase TK90_2000 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain TK90_2000 SM01232 TK90_2000 TK90_2001 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_2001 SM00954 Region found in RelA / SpoT proteins TK90_2002 SM01409 TK90_2002 TK90_2003 SM00072 Guanylate kinase homologues. TK90_2008 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase TK90_2010 SM00487 DEAD-like helicases superfamily TK90_2010 SM00490 helicase superfamily c-terminal domain TK90_2016 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TK90_2020 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TK90_2020 SM00245 tail specific protease TK90_2022 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TK90_2023 SM00450 Rhodanese Homology Domain TK90_2032 SM00382 ATPases associated with a variety of cellular activities TK90_2032 SM01086 C-terminal, D2-small domain, of ClpB protein TK90_2034 SM00363 S4 RNA-binding domain TK90_2036 SM00938 Nitrogen regulatory protein P-II TK90_2039 SM00881 CoA binding domain TK90_2048 SM00363 S4 RNA-binding domain TK90_2061 SM00487 DEAD-like helicases superfamily TK90_2061 SM00490 helicase superfamily c-terminal domain TK90_2061 SM00847 Helicase associated domain (HA2) Add an annotation TK90_2064 SM00382 ATPases associated with a variety of cellular activities TK90_2083 SM00822 TK90_2083 TK90_2090 SM00953 TK90_2090 TK90_2101 SM00387 Histidine kinase-like ATPases TK90_2101 SM00433 TopoisomeraseII TK90_2105 SM00244 prohibitin homologues TK90_2109 SM00852 Probable molybdopterin binding domain TK90_2123 SM00387 Histidine kinase-like ATPases TK90_2123 SM00388 His Kinase A (phosphoacceptor) domain TK90_2124 SM00382 ATPases associated with a variety of cellular activities TK90_2124 SM00448 cheY-homologous receiver domain TK90_2136 SM00116 Domain in cystathionine beta-synthase and other proteins. TK90_2136 SM01091 Transporter associated domain TK90_2139 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_2144 SM00662 RNA polymerases D TK90_2145 SM00363 S4 RNA-binding domain TK90_2145 SM01390 TK90_2145 TK90_2158 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TK90_2159 SM01374 TK90_2159 TK90_2163 SM00322 K homology RNA-binding domain TK90_2166 SM01382 TK90_2166 TK90_2166 SM01383 TK90_2166 TK90_2170 SM01403 TK90_2170 TK90_2172 SM00838 Elongation factor G C-terminus TK90_2172 SM00889 Elongation factor G, domain IV TK90_2175 SM00663 RNA polymerase I subunit A N-terminus TK90_2180 SM00649 Ribosomal protein L11/L12 TK90_2181 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. TK90_2181 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TK90_2191 SM00957 SecA DEAD-like domain TK90_2191 SM00958 SecA preprotein cross-linking domain TK90_2195 SM00864 Tubulin/FtsZ family, GTPase domain TK90_2195 SM00865 Tubulin/FtsZ family, C-terminal domain TK90_2196 SM00842 Cell division protein FtsA TK90_2221 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TK90_2234 SM00956 TK90_2234 TK90_2240 SM00382 ATPases associated with a variety of cellular activities TK90_2240 SM00487 DEAD-like helicases superfamily TK90_2240 SM00490 helicase superfamily c-terminal domain TK90_2243 SM00878 Biotin carboxylase C-terminal domain TK90_2250 SM00855 Phosphoglycerate mutase family TK90_2251 SM00644 TK90_2251 TK90_2255 SM01091 Transporter associated domain TK90_2257 SM00849 Metallo-beta-lactamase superfamily TK90_2263 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain TK90_2263 SM01232 TK90_2263 TK90_2265 SM00028 Tetratricopeptide repeats TK90_2268 SM00382 ATPases associated with a variety of cellular activities TK90_2268 SM00448 cheY-homologous receiver domain TK90_2269 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_2269 SM00387 Histidine kinase-like ATPases TK90_2269 SM00388 His Kinase A (phosphoacceptor) domain TK90_2274 SM00257 Lysin motif TK90_2277 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain TK90_2277 SM00437 Bacterial DNA topoisomerase I DNA-binding domain TK90_2277 SM00493 TK90_2277 TK90_2280 SM01004 Delta-aminolevulinic acid dehydratase TK90_2286 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_2286 SM00876 Biotin and Thiamin Synthesis associated domain TK90_2318 SM00052 Putative diguanylate phosphodiesterase TK90_2326 SM00342 helix_turn_helix, arabinose operon control protein TK90_2338 SM00382 ATPases associated with a variety of cellular activities TK90_2339 SM00267 diguanylate cyclase TK90_2343 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain TK90_2343 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_2346 SM00829 Enoylreductase TK90_2351 SM00448 cheY-homologous receiver domain TK90_2357 SM00100 Cyclic nucleotide-monophosphate binding domain TK90_2357 SM00419 helix_turn_helix, cAMP Regulatory protein TK90_2369 SM01001 AIR carboxylase TK90_2376 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs TK90_2376 SM00475 5'-3' exonuclease TK90_2378 SM00919 Malic enzyme, NAD binding domain TK90_2378 SM01274 TK90_2378 TK90_2382 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_2389 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TK90_2390 SM00861 Transketolase, pyrimidine binding domain TK90_2392 SM00996 S-adenosyl-L-homocysteine hydrolase TK90_2392 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TK90_2396 SM00073 Histidine Phosphotransfer domain TK90_2396 SM00260 Two component signalling adaptor domain TK90_2396 SM00387 Histidine kinase-like ATPases TK90_2396 SM00448 cheY-homologous receiver domain TK90_2396 SM01231 TK90_2396 TK90_2397 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TK90_2398 SM00260 Two component signalling adaptor domain TK90_2399 SM00448 cheY-homologous receiver domain TK90_2400 SM00448 cheY-homologous receiver domain TK90_2407 SM00732 Likely ribonuclease with RNase H fold. TK90_2414 SM00382 ATPases associated with a variety of cellular activities TK90_2433 SM00986 Uracil DNA glycosylase superfamily TK90_2433 SM00987 UreE urease accessory protein, C-terminal domain TK90_2436 SM00382 ATPases associated with a variety of cellular activities TK90_2441 SM00833 Cobalamin synthesis protein cobW C-terminal domain TK90_2446 SM00910 TK90_2446 TK90_2455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_2467 SM00487 DEAD-like helicases superfamily TK90_2467 SM00490 helicase superfamily c-terminal domain TK90_2469 SM00357 Cold shock protein domain TK90_2469 SM00382 ATPases associated with a variety of cellular activities TK90_2469 SM00959 Rho termination factor, N-terminal domain TK90_2472 SM00729 Elongator protein 3, MiaB family, Radical SAM TK90_2478 SM00271 DnaJ molecular chaperone homology domain TK90_2479 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TK90_2484 SM00478 endonuclease III TK90_2492 SM00487 DEAD-like helicases superfamily TK90_2492 SM00490 helicase superfamily c-terminal domain TK90_2497 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TK90_2497 SM00387 Histidine kinase-like ATPases TK90_2498 SM00382 ATPases associated with a variety of cellular activities TK90_2498 SM00448 cheY-homologous receiver domain TK90_2499 SM00028 Tetratricopeptide repeats TK90_2509 SM00382 ATPases associated with a variety of cellular activities TK90_2527 SM00382 ATPases associated with a variety of cellular activities TK90_2543 SM00984 UDP binding domain TK90_2544 SM00710 Parallel beta-helix repeats TK90_2557 SM00904 Riboflavin kinase TK90_2559 SM00357 Cold shock protein domain TK90_2562 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TK90_2562 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TK90_2563 SM00382 ATPases associated with a variety of cellular activities TK90_2568 SM00897 FIST N domain TK90_2568 SM01204 TK90_2568 TK90_2573 SM00563 Phosphate acyltransferases TK90_2577 SM01230 TK90_2577 TK90_2587 SM00382 ATPases associated with a variety of cellular activities TK90_2595 SM00470 ParB-like nuclease domain TK90_2598 SM01228 TK90_2598 TK90_2601 SM01234 TK90_2601 TK90_2611 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_2616 SM00320 WD40 repeats TK90_2616 SM00564 beta-propeller repeat TK90_2660 SM00986 Uracil DNA glycosylase superfamily TK90_2660 SM00987 UreE urease accessory protein, C-terminal domain TK90_2665 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TK90_2665 SM00476 deoxyribonuclease I TK90_2687 SM00052 Putative diguanylate phosphodiesterase TK90_2687 SM00091 PAS domain TK90_2687 SM00267 diguanylate cyclase TK90_2695 SM00532 Ligase N family TK90_2715 SM00953 TK90_2715 TK90_2728 SM00320 WD40 repeats TK90_2728 SM00564 beta-propeller repeat TK90_2730 SM00487 DEAD-like helicases superfamily TK90_2742 SM00530 Helix-turn-helix XRE-family like proteins TK90_2744 SM00966 SpoVT / AbrB like domain TK90_2756 SM00244 prohibitin homologues TK90_2768 SM00387 Histidine kinase-like ATPases TK90_2768 SM00433 TopoisomeraseII TK90_2770 SM00434 DNA Topoisomerase IV TK90_2772 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TK90_2775 SM00470 ParB-like nuclease domain TK90_2792 SM00487 DEAD-like helicases superfamily TK90_2792 SM00490 helicase superfamily c-terminal domain TK90_2795 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. TK90_2802 SM00563 Phosphate acyltransferases TK90_2808 SM00387 Histidine kinase-like ATPases TK90_2808 SM00448 cheY-homologous receiver domain TK90_2813 SM00487 DEAD-like helicases superfamily TK90_2813 SM00490 helicase superfamily c-terminal domain TK90_2855 SM00382 ATPases associated with a variety of cellular activities TK90_2860 SM00382 ATPases associated with a variety of cellular activities TK90_2866 SM00267 diguanylate cyclase TK90_2875 SM00327 von Willebrand factor (vWF) type A domain TK90_2877 SM00320 WD40 repeats TK90_2877 SM00564 beta-propeller repeat TK90_2880 SM00470 ParB-like nuclease domain