locus-tag class description TVD_00005 PF02092 Glycyl-tRNA synthetase beta subunit TVD_00005 PF05746 DALR anticodon binding domain TVD_00010 PF01553 Acyltransferase TVD_00020 PF00899 ThiF family TVD_00025 PF01026 TatD related DNase TVD_00030 PF00248 Aldo/keto reductase family TVD_00045 PF00485 Phosphoribulokinase / Uridine kinase family TVD_00050 PF02080 TrkA-C domain TVD_00050 PF03600 Citrate transporter TVD_00055 PF00582 Universal stress protein family TVD_00060 PF02390 Putative methyltransferase TVD_00065 PF05690 Thiazole biosynthesis protein ThiG TVD_00070 PF02597 ThiS family TVD_00070 PF05690 Thiazole biosynthesis protein ThiG TVD_00090 PF00271 Helicase conserved C-terminal domain TVD_00090 PF00270 DEAD/DEAH box helicase TVD_00095 PF00085 Thioredoxin TVD_00100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVD_00100 PF07498 Rho termination factor, N-terminal domain TVD_00100 PF07497 Rho termination factor, RNA-binding domain TVD_00115 PF06969 HemN C-terminal domain TVD_00115 PF04055 Radical SAM superfamily TVD_00120 PF01725 Ham1 family TVD_00125 PF03725 3' exoribonuclease family, domain 2 TVD_00125 PF01138 3' exoribonuclease family, domain 1 TVD_00130 PF08340 Domain of unknown function (DUF1732) TVD_00130 PF03755 YicC-like family, N-terminal region TVD_00140 PF00011 Hsp20/alpha crystallin family TVD_00145 PF00226 DnaJ domain TVD_00145 PF01556 DnaJ C terminal domain TVD_00150 PF00595 PDZ domain TVD_00150 PF13180 PDZ domain TVD_00155 PF02391 MoaE protein TVD_00160 PF02597 ThiS family TVD_00165 PF01967 MoaC family TVD_00175 PF00633 Helix-hairpin-helix motif TVD_00175 PF00730 HhH-GPD superfamily base excision DNA repair protein TVD_00175 PF10576 Iron-sulfur binding domain of endonuclease III TVD_00175 PF14815 NUDIX domain TVD_00180 PF04362 Bacterial Fe(2+) trafficking TVD_00190 PF01327 Polypeptide deformylase TVD_00210 PF00293 NUDIX domain TVD_00215 PF04851 Type III restriction enzyme, res subunit TVD_00215 PF00271 Helicase conserved C-terminal domain TVD_00230 PF01370 NAD dependent epimerase/dehydratase family TVD_00235 PF02698 DUF218 domain TVD_00240 PF10531 SLBB domain TVD_00240 PF02563 Polysaccharide biosynthesis/export protein TVD_00245 PF02397 Bacterial sugar transferase TVD_00250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_00250 PF00512 His Kinase A (phospho-acceptor) domain TVD_00255 PF00072 Response regulator receiver domain TVD_00255 PF00158 Sigma-54 interaction domain TVD_00255 PF02954 Bacterial regulatory protein, Fis family TVD_00310 PF13614 AAA domain TVD_00320 PF01471 Putative peptidoglycan binding domain TVD_00320 PF13401 AAA domain TVD_00350 PF00534 Glycosyl transferases group 1 TVD_00355 PF13537 Glutamine amidotransferase domain TVD_00355 PF00733 Asparagine synthase TVD_00360 PF00534 Glycosyl transferases group 1 TVD_00365 PF00534 Glycosyl transferases group 1 TVD_00365 PF13439 Glycosyltransferase Family 4 TVD_00375 PF01381 Helix-turn-helix TVD_00380 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB TVD_00405 PF00535 Glycosyl transferase family 2 TVD_00415 PF00550 Phosphopantetheine attachment site TVD_00415 PF00501 AMP-binding enzyme TVD_00415 PF13193 AMP-binding enzyme C-terminal domain TVD_00415 PF00668 Condensation domain TVD_00415 PF00975 Thioesterase domain TVD_00420 PF00005 ABC transporter TVD_00420 PF00664 ABC transporter transmembrane region TVD_00430 PF04230 Polysaccharide pyruvyl transferase TVD_00435 PF00535 Glycosyl transferase family 2 TVD_00450 PF00501 AMP-binding enzyme TVD_00450 PF13193 AMP-binding enzyme C-terminal domain TVD_00455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TVD_00455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TVD_00485 PF02350 UDP-N-acetylglucosamine 2-epimerase TVD_00495 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TVD_00495 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVD_00495 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVD_00510 PF03551 Transcriptional regulator PadR-like family TVD_00510 PF13847 Methyltransferase domain TVD_00550 PF00551 Formyl transferase TVD_00550 PF01842 ACT domain TVD_00555 PF02401 LytB protein TVD_00560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVD_00565 PF01252 Signal peptidase (SPase) II TVD_00570 PF06827 Zinc finger found in FPG and IleRS TVD_00570 PF00133 tRNA synthetases class I (I, L, M and V) TVD_00570 PF08264 Anticodon-binding domain of tRNA TVD_00575 PF06574 FAD synthetase TVD_00575 PF01687 Riboflavin kinase TVD_00580 PF03023 Lipid II flippase MurJ TVD_00585 PF00313 'Cold-shock' DNA-binding domain TVD_00595 PF00563 EAL domain TVD_00595 PF00990 Diguanylate cyclase, GGDEF domain TVD_00595 PF03707 Bacterial signalling protein N terminal repeat TVD_00600 PF00072 Response regulator receiver domain TVD_00600 PF00990 Diguanylate cyclase, GGDEF domain TVD_00605 PF13466 STAS domain TVD_00610 PF12729 Four helix bundle sensory module for signal transduction TVD_00610 PF00672 HAMP domain TVD_00610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_00615 PF00072 Response regulator receiver domain TVD_00615 PF01339 CheB methylesterase TVD_00620 PF03975 CheD chemotactic sensory transduction TVD_00625 PF03705 CheR methyltransferase, all-alpha domain TVD_00625 PF01739 CheR methyltransferase, SAM binding domain TVD_00630 PF00672 HAMP domain TVD_00630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_00630 PF02203 Tar ligand binding domain homologue TVD_00635 PF13614 AAA domain TVD_00640 PF01584 CheW-like domain TVD_00645 PF02895 Signal transducing histidine kinase, homodimeric domain TVD_00645 PF01584 CheW-like domain TVD_00645 PF09078 CheY binding TVD_00645 PF01627 Hpt domain TVD_00645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_00650 PF00072 Response regulator receiver domain TVD_00660 PF13718 GNAT acetyltransferase 2 TVD_00660 PF17176 tRNA-binding domain TVD_00660 PF05127 Helicase TVD_00665 PF00672 HAMP domain TVD_00665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_00685 PF04204 Homoserine O-succinyltransferase TVD_00705 PF02321 Outer membrane efflux protein TVD_00715 PF01966 HD domain TVD_00715 PF12627 Probable RNA and SrmB- binding site of polymerase A TVD_00715 PF01743 Poly A polymerase head domain TVD_00725 PF00171 Aldehyde dehydrogenase family TVD_00745 PF00583 Acetyltransferase (GNAT) family TVD_00745 PF13607 Succinyl-CoA ligase like flavodoxin domain TVD_00745 PF13380 CoA binding domain TVD_00750 PF00850 Histone deacetylase domain TVD_00760 PF00005 ABC transporter TVD_00780 PF01475 Ferric uptake regulator family TVD_00785 PF08443 RimK-like ATP-grasp domain TVD_00785 PF18030 RimK PreATP-grasp domain TVD_00795 PF08443 RimK-like ATP-grasp domain TVD_00795 PF18030 RimK PreATP-grasp domain TVD_00800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TVD_00800 PF00391 PEP-utilising enzyme, mobile domain TVD_00800 PF02896 PEP-utilising enzyme, TIM barrel domain TVD_00805 PF03618 Kinase/pyrophosphorylase TVD_00810 PF02325 YGGT family TVD_00830 PF06508 Queuosine biosynthesis protein QueC TVD_00840 PF13419 Haloacid dehalogenase-like hydrolase TVD_00850 PF00293 NUDIX domain TVD_00855 PF00459 Inositol monophosphatase family TVD_00860 PF00343 Carbohydrate phosphorylase TVD_00865 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TVD_00865 PF02843 Phosphoribosylglycinamide synthetase, C domain TVD_00865 PF02844 Phosphoribosylglycinamide synthetase, N domain TVD_00870 PF01808 AICARFT/IMPCHase bienzyme TVD_00870 PF02142 MGS-like domain TVD_00875 PF13649 Methyltransferase domain TVD_00880 PF08241 Methyltransferase domain TVD_00885 PF04376 Arginine-tRNA-protein transferase, N terminus TVD_00885 PF04377 Arginine-tRNA-protein transferase, C terminus TVD_00890 PF02574 Homocysteine S-methyltransferase TVD_00890 PF02607 B12 binding domain TVD_00890 PF00809 Pterin binding enzyme TVD_00890 PF02965 Vitamin B12 dependent methionine synthase, activation domain TVD_00890 PF02310 B12 binding domain TVD_00905 PF00795 Carbon-nitrogen hydrolase TVD_00905 PF00583 Acetyltransferase (GNAT) family TVD_00910 PF00072 Response regulator receiver domain TVD_00910 PF00196 Bacterial regulatory proteins, luxR family TVD_00935 PF08240 Alcohol dehydrogenase GroES-like domain TVD_00935 PF00107 Zinc-binding dehydrogenase TVD_00950 PF00211 Adenylate and Guanylate cyclase catalytic domain TVD_00955 PF00459 Inositol monophosphatase family TVD_00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVD_00965 PF03466 LysR substrate binding domain TVD_00970 PF17151 Periplasmic sensor domain TVD_00970 PF00990 Diguanylate cyclase, GGDEF domain TVD_00975 PF12848 ABC transporter TVD_00975 PF00005 ABC transporter TVD_01000 PF13533 Biotin-lipoyl like TVD_01005 PF00873 AcrB/AcrD/AcrF family TVD_01045 PF00578 AhpC/TSA family TVD_01060 PF13847 Methyltransferase domain TVD_01065 PF12833 Helix-turn-helix domain TVD_01065 PF06445 GyrI-like small molecule binding domain TVD_01070 PF04262 Glutamate-cysteine ligase TVD_01075 PF13409 Glutathione S-transferase, N-terminal domain TVD_01080 PF13533 Biotin-lipoyl like TVD_01085 PF00873 AcrB/AcrD/AcrF family TVD_01095 PF07690 Major Facilitator Superfamily TVD_01100 PF01641 SelR domain TVD_01105 PF12792 CSS motif domain associated with EAL TVD_01105 PF00563 EAL domain TVD_01115 PF00534 Glycosyl transferases group 1 TVD_01115 PF00862 Sucrose synthase TVD_01130 PF00696 Amino acid kinase family TVD_01135 PF00175 Oxidoreductase NAD-binding domain TVD_01135 PF00042 Globin TVD_01135 PF00970 Oxidoreductase FAD-binding domain TVD_01140 PF00692 dUTPase TVD_01145 PF04127 DNA / pantothenate metabolism flavoprotein TVD_01145 PF02441 Flavoprotein TVD_01165 PF03471 Transporter associated domain TVD_01165 PF02080 TrkA-C domain TVD_01165 PF00999 Sodium/hydrogen exchanger family TVD_01170 PF00580 UvrD/REP helicase N-terminal domain TVD_01170 PF13361 UvrD-like helicase C-terminal domain TVD_01180 PF01510 N-acetylmuramoyl-L-alanine amidase TVD_01195 PF00459 Inositol monophosphatase family TVD_01200 PF02954 Bacterial regulatory protein, Fis family TVD_01205 PF01207 Dihydrouridine synthase (Dus) TVD_01220 PF02785 Biotin carboxylase C-terminal domain TVD_01220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TVD_01220 PF00289 Biotin carboxylase, N-terminal domain TVD_01225 PF00364 Biotin-requiring enzyme TVD_01230 PF01220 Dehydroquinase class II TVD_01235 PF13488 Glycine zipper TVD_01235 PF00691 OmpA family TVD_01240 PF08501 Shikimate dehydrogenase substrate binding domain TVD_01240 PF01488 Shikimate / quinate 5-dehydrogenase TVD_01240 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TVD_01245 PF00490 Delta-aminolevulinic acid dehydratase TVD_01250 PF01218 Coproporphyrinogen III oxidase TVD_01255 PF01300 Telomere recombination TVD_01260 PF13368 Topoisomerase C-terminal repeat TVD_01260 PF01751 Toprim domain TVD_01260 PF01131 DNA topoisomerase TVD_01265 PF04361 Protein of unknown function (DUF494) TVD_01270 PF17782 DprA winged helix domain TVD_01270 PF02481 DNA recombination-mediator protein A TVD_01280 PF01327 Polypeptide deformylase TVD_01285 PF00551 Formyl transferase TVD_01285 PF02911 Formyl transferase, C-terminal domain TVD_01290 PF01029 NusB family TVD_01290 PF01189 16S rRNA methyltransferase RsmB/F TVD_01300 PF00672 HAMP domain TVD_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_01300 PF00512 His Kinase A (phospho-acceptor) domain TVD_01300 PF00989 PAS fold TVD_01305 PF00158 Sigma-54 interaction domain TVD_01305 PF02954 Bacterial regulatory protein, Fis family TVD_01305 PF00072 Response regulator receiver domain TVD_01310 PF02254 TrkA-N domain TVD_01310 PF02080 TrkA-C domain TVD_01315 PF02386 Cation transport protein TVD_01325 PF03279 Bacterial lipid A biosynthesis acyltransferase TVD_01330 PF06827 Zinc finger found in FPG and IleRS TVD_01330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TVD_01330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TVD_01335 PF07995 Glucose / Sorbosone dehydrogenase TVD_01340 PF01625 Peptide methionine sulfoxide reductase TVD_01345 PF07722 Peptidase C26 TVD_01355 PF02152 Dihydroneopterin aldolase TVD_01365 PF00543 Nitrogen regulatory protein P-II TVD_01370 PF00909 Ammonium Transporter Family TVD_01375 PF00005 ABC transporter TVD_01380 PF03649 Uncharacterised protein family (UPF0014) TVD_01385 PF17284 Spermidine synthase tetramerisation domain TVD_01390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TVD_01390 PF17944 Arginine decarboxylase C-terminal helical extension TVD_01390 PF17810 Arginine decarboxylase helical bundle domain TVD_01395 PF05166 YcgL domain TVD_01420 PF05567 Neisseria PilC beta-propeller domain TVD_01460 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system TVD_01470 PF01381 Helix-turn-helix TVD_01475 PF08534 Redoxin TVD_01485 PF02445 Quinolinate synthetase A protein TVD_01520 PF00175 Oxidoreductase NAD-binding domain TVD_01520 PF00970 Oxidoreductase FAD-binding domain TVD_01535 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVD_01535 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding TVD_01535 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_01565 PF00486 Transcriptional regulatory protein, C terminal TVD_01565 PF00072 Response regulator receiver domain TVD_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_01570 PF08521 Two-component sensor kinase N-terminal TVD_01570 PF00512 His Kinase A (phospho-acceptor) domain TVD_01575 PF01266 FAD dependent oxidoreductase TVD_01580 PF00270 DEAD/DEAH box helicase TVD_01580 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TVD_01580 PF00271 Helicase conserved C-terminal domain TVD_01580 PF04408 Helicase associated domain (HA2) TVD_01580 PF11898 Domain of unknown function (DUF3418) TVD_01590 PF03485 Arginyl tRNA synthetase N terminal domain TVD_01590 PF05746 DALR anticodon binding domain TVD_01590 PF00750 tRNA synthetases class I (R) TVD_01595 PF00271 Helicase conserved C-terminal domain TVD_01595 PF17764 3′ DNA-binding domain (3′BD) TVD_01595 PF18074 Primosomal protein N C-terminal domain TVD_01595 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TVD_01595 PF00270 DEAD/DEAH box helicase TVD_01600 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TVD_01600 PF01610 Transposase TVD_01600 PF13542 Helix-turn-helix domain of transposase family ISL3 TVD_01605 PF02233 NAD(P) transhydrogenase beta subunit TVD_01610 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TVD_01615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TVD_01615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TVD_01625 PF00762 Ferrochelatase TVD_01630 PF02464 Competence-damaged protein TVD_01630 PF18146 Damage-inducible protein CinA KH domain TVD_01630 PF00994 Probable molybdopterin binding domain TVD_01650 PF04612 Type II secretion system (T2SS), protein M TVD_01655 PF05134 Type II secretion system (T2SS), protein L TVD_01655 PF12693 GspL periplasmic domain TVD_01670 PF02501 Type II secretion system (T2SS), protein I TVD_01670 PF07963 Prokaryotic N-terminal methylation motif TVD_01675 PF12019 Type II transport protein GspH TVD_01675 PF07963 Prokaryotic N-terminal methylation motif TVD_01680 PF08334 Type II secretion system (T2SS), protein G TVD_01680 PF07963 Prokaryotic N-terminal methylation motif TVD_01685 PF00482 Type II secretion system (T2SS), protein F TVD_01690 PF00437 Type II/IV secretion system protein TVD_01695 PF00263 Bacterial type II and III secretion system protein TVD_01695 PF03958 Bacterial type II/III secretion system short domain TVD_01700 PF11356 Type II secretion system protein C TVD_01730 PF01679 Proteolipid membrane potential modulator TVD_01745 PF04546 Sigma-70, non-essential region TVD_01745 PF03979 Sigma-70 factor, region 1.1 TVD_01745 PF00140 Sigma-70 factor, region 1.2 TVD_01745 PF04542 Sigma-70 region 2 TVD_01745 PF04539 Sigma-70 region 3 TVD_01745 PF04545 Sigma-70, region 4 TVD_01750 PF08278 DNA primase DnaG DnaB-binding TVD_01750 PF10410 DnaB-helicase binding domain of primase TVD_01750 PF01807 CHC2 zinc finger TVD_01750 PF13662 Toprim domain TVD_01750 PF08275 DNA primase catalytic core, N-terminal domain TVD_01755 PF04898 Glutamate synthase central domain TVD_01755 PF00310 Glutamine amidotransferases class-II TVD_01755 PF01493 GXGXG motif TVD_01755 PF01645 Conserved region in glutamate synthase TVD_01765 PF01966 HD domain TVD_01765 PF13286 Phosphohydrolase-associated domain TVD_01770 PF01761 3-dehydroquinate synthase TVD_01775 PF01165 Ribosomal protein S21 TVD_01785 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TVD_01785 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_01790 PF01208 Uroporphyrinogen decarboxylase (URO-D) TVD_01800 PF00905 Penicillin binding protein transpeptidase domain TVD_01800 PF00912 Transglycosylase TVD_01800 PF17092 Penicillin-binding protein OB-like domain TVD_01825 PF03958 Bacterial type II/III secretion system short domain TVD_01825 PF00263 Bacterial type II and III secretion system protein TVD_01825 PF11741 AMIN domain TVD_01825 PF07660 Secretin and TonB N terminus short domain TVD_01830 PF01202 Shikimate kinase TVD_01845 PF00294 pfkB family carbohydrate kinase TVD_01850 PF00381 PTS HPr component phosphorylation site TVD_01860 PF03668 P-loop ATPase protein family TVD_01865 PF02603 HPr Serine kinase N terminus TVD_01865 PF07475 HPr Serine kinase C-terminal domain TVD_01870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TVD_01875 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TVD_01880 PF04552 Sigma-54, DNA binding domain TVD_01880 PF04963 Sigma-54 factor, core binding domain TVD_01880 PF00309 Sigma-54 factor, Activator interacting domain (AID) TVD_01885 PF12399 Branched-chain amino acid ATP-binding cassette transporter TVD_01885 PF00005 ABC transporter TVD_01905 PF01380 SIS domain TVD_01905 PF00571 CBS domain TVD_01910 PF01699 Sodium/calcium exchanger protein TVD_01915 PF16363 GDP-mannose 4,6 dehydratase TVD_01920 PF00296 Luciferase-like monooxygenase TVD_01930 PF00005 ABC transporter TVD_01935 PF02405 Permease MlaE TVD_01940 PF02470 MlaD protein TVD_01945 PF05494 MlaC protein TVD_01955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TVD_01960 PF01634 ATP phosphoribosyltransferase TVD_01965 PF00793 DAHP synthetase I family TVD_01970 PF00815 Histidinol dehydrogenase TVD_01975 PF00155 Aminotransferase class I and II TVD_01980 PF00270 DEAD/DEAH box helicase TVD_01980 PF08494 DEAD/H associated TVD_01980 PF00271 Helicase conserved C-terminal domain TVD_01995 PF01722 BolA-like protein TVD_02010 PF13419 Haloacid dehalogenase-like hydrolase TVD_02020 PF08443 RimK-like ATP-grasp domain TVD_02020 PF02080 TrkA-C domain TVD_02020 PF18030 RimK PreATP-grasp domain TVD_02035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TVD_02045 PF01026 TatD related DNase TVD_02050 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TVD_02050 PF01433 Peptidase family M1 domain TVD_02050 PF11940 Domain of unknown function (DUF3458) Ig-like fold TVD_02075 PF05425 Copper resistance protein D TVD_02080 PF13180 PDZ domain TVD_02085 PF01784 NIF3 (NGG1p interacting factor 3) TVD_02090 PF00355 Rieske [2Fe-2S] domain TVD_02090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TVD_02095 PF00033 Cytochrome b/b6/petB TVD_02095 PF00032 Cytochrome b(C-terminal)/b6/petD TVD_02100 PF02167 Cytochrome C1 family TVD_02105 PF00043 Glutathione S-transferase, C-terminal domain TVD_02105 PF02798 Glutathione S-transferase, N-terminal domain TVD_02110 PF04386 Stringent starvation protein B TVD_02115 PF01565 FAD binding domain TVD_02115 PF02913 FAD linked oxidases, C-terminal domain TVD_02120 PF02021 Uncharacterised protein family UPF0102 TVD_02125 PF04348 LppC putative lipoprotein TVD_02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_02135 PF02381 MraZ protein, putative antitoxin-like TVD_02140 PF01795 MraW methylase family TVD_02145 PF04999 Cell division protein FtsL TVD_02150 PF03717 Penicillin-binding Protein dimerisation domain TVD_02150 PF00905 Penicillin binding protein transpeptidase domain TVD_02155 PF08245 Mur ligase middle domain TVD_02155 PF02875 Mur ligase family, glutamate ligase domain TVD_02155 PF01225 Mur ligase family, catalytic domain TVD_02160 PF01225 Mur ligase family, catalytic domain TVD_02160 PF08245 Mur ligase middle domain TVD_02160 PF02875 Mur ligase family, glutamate ligase domain TVD_02165 PF00953 Glycosyl transferase family 4 TVD_02165 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TVD_02170 PF08245 Mur ligase middle domain TVD_02170 PF02875 Mur ligase family, glutamate ligase domain TVD_02175 PF01098 Cell cycle protein TVD_02180 PF04101 Glycosyltransferase family 28 C-terminal domain TVD_02180 PF03033 Glycosyltransferase family 28 N-terminal domain TVD_02185 PF01225 Mur ligase family, catalytic domain TVD_02185 PF02875 Mur ligase family, glutamate ligase domain TVD_02185 PF08245 Mur ligase middle domain TVD_02190 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TVD_02190 PF01565 FAD binding domain TVD_02195 PF07478 D-ala D-ala ligase C-terminus TVD_02195 PF01820 D-ala D-ala ligase N-terminus TVD_02200 PF08478 POTRA domain, FtsQ-type TVD_02200 PF03799 Cell division protein FtsQ TVD_02205 PF02491 SHS2 domain inserted in FTSA TVD_02210 PF12327 FtsZ family, C-terminal domain TVD_02210 PF00091 Tubulin/FtsZ family, GTPase domain TVD_02215 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TVD_02230 PF02810 SEC-C motif TVD_02230 PF07517 SecA DEAD-like domain TVD_02230 PF01043 SecA preprotein cross-linking domain TVD_02230 PF07516 SecA Wing and Scaffold domain TVD_02235 PF01960 ArgJ family TVD_02240 PF00293 NUDIX domain TVD_02245 PF07072 Cell division protein TVD_02250 PF01121 Dephospho-CoA kinase TVD_02255 PF01478 Type IV leader peptidase family TVD_02255 PF06750 Bacterial Peptidase A24 N-terminal domain TVD_02260 PF00482 Type II secretion system (T2SS), protein F TVD_02265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TVD_02265 PF00437 Type II/IV secretion system protein TVD_02285 PF03143 Elongation factor Tu C-terminal domain TVD_02285 PF00009 Elongation factor Tu GTP binding domain TVD_02285 PF03144 Elongation factor Tu domain 2 TVD_02295 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TVD_02300 PF02357 Transcription termination factor nusG TVD_02300 PF00467 KOW motif TVD_02305 PF00298 Ribosomal protein L11, RNA binding domain TVD_02305 PF03946 Ribosomal protein L11, N-terminal domain TVD_02310 PF00687 Ribosomal protein L1p/L10e family TVD_02315 PF00466 Ribosomal protein L10 TVD_02320 PF00542 Ribosomal protein L7/L12 C-terminal domain TVD_02320 PF16320 Ribosomal protein L7/L12 dimerisation domain TVD_02325 PF04561 RNA polymerase Rpb2, domain 2 TVD_02325 PF04560 RNA polymerase Rpb2, domain 7 TVD_02325 PF04563 RNA polymerase beta subunit TVD_02325 PF04565 RNA polymerase Rpb2, domain 3 TVD_02325 PF10385 RNA polymerase beta subunit external 1 domain TVD_02325 PF00562 RNA polymerase Rpb2, domain 6 TVD_02330 PF04997 RNA polymerase Rpb1, domain 1 TVD_02330 PF00623 RNA polymerase Rpb1, domain 2 TVD_02330 PF04983 RNA polymerase Rpb1, domain 3 TVD_02330 PF05000 RNA polymerase Rpb1, domain 4 TVD_02330 PF04998 RNA polymerase Rpb1, domain 5 TVD_02335 PF00164 Ribosomal protein S12/S23 TVD_02340 PF00177 Ribosomal protein S7p/S5e TVD_02345 PF00679 Elongation factor G C-terminus TVD_02345 PF14492 Elongation Factor G, domain II TVD_02345 PF03144 Elongation factor Tu domain 2 TVD_02345 PF00009 Elongation factor Tu GTP binding domain TVD_02345 PF03764 Elongation factor G, domain IV TVD_02350 PF03144 Elongation factor Tu domain 2 TVD_02350 PF03143 Elongation factor Tu C-terminal domain TVD_02350 PF00009 Elongation factor Tu GTP binding domain TVD_02355 PF00338 Ribosomal protein S10p/S20e TVD_02360 PF00297 Ribosomal protein L3 TVD_02365 PF00573 Ribosomal protein L4/L1 family TVD_02370 PF00276 Ribosomal protein L23 TVD_02375 PF00181 Ribosomal Proteins L2, RNA binding domain TVD_02375 PF03947 Ribosomal Proteins L2, C-terminal domain TVD_02380 PF00203 Ribosomal protein S19 TVD_02385 PF00237 Ribosomal protein L22p/L17e TVD_02390 PF07650 KH domain TVD_02390 PF00189 Ribosomal protein S3, C-terminal domain TVD_02395 PF00252 Ribosomal protein L16p/L10e TVD_02400 PF00831 Ribosomal L29 protein TVD_02405 PF00366 Ribosomal protein S17 TVD_02410 PF00238 Ribosomal protein L14p/L23e TVD_02415 PF00467 KOW motif TVD_02415 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TVD_02420 PF00281 Ribosomal protein L5 TVD_02420 PF00673 ribosomal L5P family C-terminus TVD_02425 PF00253 Ribosomal protein S14p/S29e TVD_02430 PF00410 Ribosomal protein S8 TVD_02435 PF00347 Ribosomal protein L6 TVD_02440 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TVD_02445 PF03719 Ribosomal protein S5, C-terminal domain TVD_02445 PF00333 Ribosomal protein S5, N-terminal domain TVD_02450 PF00327 Ribosomal protein L30p/L7e TVD_02455 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TVD_02460 PF00344 SecY translocase TVD_02465 PF00416 Ribosomal protein S13/S18 TVD_02470 PF00411 Ribosomal protein S11 TVD_02475 PF00163 Ribosomal protein S4/S9 N-terminal domain TVD_02475 PF01479 S4 domain TVD_02480 PF01000 RNA polymerase Rpb3/RpoA insert domain TVD_02480 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TVD_02480 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TVD_02485 PF01196 Ribosomal protein L17 TVD_02490 PF17755 UvrA DNA-binding domain TVD_02490 PF17760 UvrA interaction domain TVD_02495 PF07690 Major Facilitator Superfamily TVD_02500 PF00436 Single-strand binding protein family TVD_02505 PF00919 Uncharacterized protein family UPF0004 TVD_02505 PF01938 TRAM domain TVD_02505 PF04055 Radical SAM superfamily TVD_02510 PF02562 PhoH-like protein TVD_02515 PF02130 Uncharacterized protein family UPF0054 TVD_02520 PF03471 Transporter associated domain TVD_02520 PF00571 CBS domain TVD_02525 PF00795 Carbon-nitrogen hydrolase TVD_02540 PF13603 Leucyl-tRNA synthetase, Domain 2 TVD_02540 PF00133 tRNA synthetases class I (I, L, M and V) TVD_02540 PF08264 Anticodon-binding domain of tRNA TVD_02555 PF00171 Aldehyde dehydrogenase family TVD_02560 PF01467 Cytidylyltransferase-like TVD_02570 PF02590 Predicted SPOUT methyltransferase TVD_02575 PF02545 Maf-like protein TVD_02585 PF02789 Cytosol aminopeptidase family, N-terminal domain TVD_02585 PF00883 Cytosol aminopeptidase family, catalytic domain TVD_02610 PF07238 PilZ domain TVD_02615 PF00994 Probable molybdopterin binding domain TVD_02615 PF03454 MoeA C-terminal region (domain IV) TVD_02615 PF03453 MoeA N-terminal region (domain I and II) TVD_02620 PF03205 Molybdopterin guanine dinucleotide synthesis protein B TVD_02625 PF12804 MobA-like NTP transferase domain TVD_02635 PF01145 SPFH domain / Band 7 family TVD_02640 PF02899 Phage integrase, N-terminal SAM-like domain TVD_02640 PF00589 Phage integrase family TVD_02645 PF10411 Disulfide bond isomerase protein N-terminus TVD_02645 PF13098 Thioredoxin-like domain TVD_02655 PF00085 Thioredoxin TVD_02660 PF01751 Toprim domain TVD_02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_02660 PF00986 DNA gyrase B subunit, carboxyl terminus TVD_02660 PF00204 DNA gyrase B TVD_02675 PF00873 AcrB/AcrD/AcrF family TVD_02695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TVD_02700 PF02595 Glycerate kinase family TVD_02720 PF00474 Sodium:solute symporter family TVD_02755 PF01263 Aldose 1-epimerase TVD_02765 PF01568 Molydopterin dinucleotide binding domain TVD_02765 PF00384 Molybdopterin oxidoreductase TVD_02815 PF00255 Glutathione peroxidase TVD_02820 PF00141 Peroxidase TVD_02840 PF10011 Predicted membrane protein (DUF2254) TVD_02870 PF13185 GAF domain TVD_02870 PF00990 Diguanylate cyclase, GGDEF domain TVD_02885 PF01544 CorA-like Mg2+ transporter protein TVD_02900 PF01734 Patatin-like phospholipase TVD_02915 PF02371 Transposase IS116/IS110/IS902 family TVD_02915 PF01548 Transposase TVD_02925 PF01527 Transposase TVD_02960 PF00005 ABC transporter TVD_02975 PF00270 DEAD/DEAH box helicase TVD_02975 PF08482 ATP-dependent helicase C-terminal TVD_02975 PF00271 Helicase conserved C-terminal domain TVD_02975 PF04408 Helicase associated domain (HA2) TVD_02985 PF02954 Bacterial regulatory protein, Fis family TVD_02985 PF00072 Response regulator receiver domain TVD_02985 PF00158 Sigma-54 interaction domain TVD_02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_02990 PF00512 His Kinase A (phospho-acceptor) domain TVD_03000 PF00311 Phosphoenolpyruvate carboxylase TVD_03005 PF08323 Starch synthase catalytic domain TVD_03005 PF00534 Glycosyl transferases group 1 TVD_03010 PF00342 Phosphoglucose isomerase TVD_03035 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) TVD_03045 PF04226 Transglycosylase associated protein TVD_03050 PF01464 Transglycosylase SLT domain TVD_03050 PF00497 Bacterial extracellular solute-binding proteins, family 3 TVD_03080 PF00563 EAL domain TVD_03080 PF08448 PAS fold TVD_03080 PF00990 Diguanylate cyclase, GGDEF domain TVD_03085 PF01355 High potential iron-sulfur protein TVD_03095 PF00689 Cation transporting ATPase, C-terminus TVD_03095 PF00690 Cation transporter/ATPase, N-terminus TVD_03100 PF03707 Bacterial signalling protein N terminal repeat TVD_03100 PF00990 Diguanylate cyclase, GGDEF domain TVD_03100 PF00563 EAL domain TVD_03120 PF01596 O-methyltransferase TVD_03130 PF13291 ACT domain TVD_03130 PF04607 Region found in RelA / SpoT proteins TVD_03130 PF02824 TGS domain TVD_03135 PF01192 RNA polymerase Rpb6 TVD_03140 PF00625 Guanylate kinase TVD_03150 PF00348 Polyprenyl synthetase TVD_03155 PF00829 Ribosomal prokaryotic L21 protein TVD_03160 PF01016 Ribosomal L27 protein TVD_03165 PF01926 50S ribosome-binding GTPase TVD_03165 PF01018 GTP1/OBG TVD_03170 PF00696 Amino acid kinase family TVD_03170 PF01472 PUA domain TVD_03175 PF02601 Exonuclease VII, large subunit TVD_03175 PF13742 OB-fold nucleic acid binding domain TVD_03185 PF00478 IMP dehydrogenase / GMP reductase domain TVD_03185 PF00571 CBS domain TVD_03190 PF00958 GMP synthase C terminal domain TVD_03190 PF00117 Glutamine amidotransferase class-I TVD_03190 PF02540 NAD synthase TVD_03195 PF00970 Oxidoreductase FAD-binding domain TVD_03195 PF00111 2Fe-2S iron-sulfur cluster binding domain TVD_03195 PF00175 Oxidoreductase NAD-binding domain TVD_03220 PF01594 AI-2E family transporter TVD_03240 PF13091 PLD-like domain TVD_03240 PF13396 Phospholipase_D-nuclease N-terminal TVD_03245 PF00990 Diguanylate cyclase, GGDEF domain TVD_03245 PF00563 EAL domain TVD_03245 PF03707 Bacterial signalling protein N terminal repeat TVD_03270 PF09347 Domain of unknown function (DUF1989) TVD_03275 PF02308 MgtC family TVD_03285 PF18011 C-terminal domain found in long catalases TVD_03285 PF06628 Catalase-related immune-responsive TVD_03285 PF00199 Catalase TVD_03290 PF10011 Predicted membrane protein (DUF2254) TVD_03330 PF10996 Beta-Casp domain TVD_03330 PF00753 Metallo-beta-lactamase superfamily TVD_03330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TVD_03340 PF02028 BCCT, betaine/carnitine/choline family transporter TVD_03365 PF01580 FtsK/SpoIIIE family TVD_03365 PF09397 Ftsk gamma domain TVD_03365 PF17854 FtsK alpha domain TVD_03365 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TVD_03370 PF03548 Outer membrane lipoprotein carrier protein LolA TVD_03375 PF16193 AAA C-terminal domain TVD_03375 PF12002 MgsA AAA+ ATPase C terminal TVD_03375 PF00004 ATPase family associated with various cellular activities (AAA) TVD_03385 PF01169 Uncharacterized protein family UPF0016 TVD_03400 PF03861 ANTAR domain TVD_03400 PF08376 Nitrate and nitrite sensing TVD_03410 PF00528 Binding-protein-dependent transport system inner membrane component TVD_03415 PF00005 ABC transporter TVD_03420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TVD_03420 PF04324 BFD-like [2Fe-2S] binding domain TVD_03420 PF18267 Rubredoxin NAD+ reductase C-terminal domain TVD_03420 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_03420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVD_03425 PF00355 Rieske [2Fe-2S] domain TVD_03430 PF01568 Molydopterin dinucleotide binding domain TVD_03430 PF04324 BFD-like [2Fe-2S] binding domain TVD_03430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVD_03430 PF00384 Molybdopterin oxidoreductase TVD_03435 PF14824 Sirohaem biosynthesis protein central TVD_03435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_03435 PF10414 Sirohaem synthase dimerisation region TVD_03455 PF12161 HsdM N-terminal domain TVD_03455 PF02384 N-6 DNA Methylase TVD_03470 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TVD_03470 PF00271 Helicase conserved C-terminal domain TVD_03470 PF08463 EcoEI R protein C-terminal TVD_03470 PF04851 Type III restriction enzyme, res subunit TVD_03485 PF01381 Helix-turn-helix TVD_03500 PF01812 5-formyltetrahydrofolate cyclo-ligase family TVD_03515 PF01264 Chorismate synthase TVD_03520 PF12832 MFS_1 like family TVD_03525 PF01113 Dihydrodipicolinate reductase, N-terminus TVD_03525 PF05173 Dihydrodipicolinate reductase, C-terminus TVD_03530 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TVD_03530 PF00117 Glutamine amidotransferase class-I TVD_03535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TVD_03535 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TVD_03535 PF02142 MGS-like domain TVD_03540 PF03449 Transcription elongation factor, N-terminal TVD_03540 PF01272 Transcription elongation factor, GreA/GreB, C-term TVD_03545 PF01985 CRS1 / YhbY (CRM) domain TVD_03550 PF01728 FtsJ-like methyltransferase TVD_03555 PF17862 AAA+ lid domain TVD_03555 PF06480 FtsH Extracellular TVD_03555 PF01434 Peptidase family M41 TVD_03555 PF00004 ATPase family associated with various cellular activities (AAA) TVD_03560 PF00809 Pterin binding enzyme TVD_03565 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVD_03565 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVD_03565 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVD_03565 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVD_03570 PF00121 Triosephosphate isomerase TVD_03575 PF03840 Preprotein translocase SecG subunit TVD_03585 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TVD_03590 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TVD_03595 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TVD_03600 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TVD_03610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TVD_03610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TVD_03610 PF10531 SLBB domain TVD_03615 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TVD_03615 PF00384 Molybdopterin oxidoreductase TVD_03615 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TVD_03620 PF00146 NADH dehydrogenase TVD_03625 PF12838 4Fe-4S dicluster domain TVD_03630 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TVD_03635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TVD_03640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TVD_03640 PF00361 Proton-conducting membrane transporter TVD_03645 PF00361 Proton-conducting membrane transporter TVD_03650 PF00361 Proton-conducting membrane transporter TVD_03665 PF02576 RimP N-terminal domain TVD_03665 PF17384 RimP C-terminal SH3 domain TVD_03670 PF13184 NusA-like KH domain TVD_03670 PF08529 NusA N-terminal domain TVD_03675 PF11987 Translation-initiation factor 2 TVD_03675 PF03144 Elongation factor Tu domain 2 TVD_03675 PF00009 Elongation factor Tu GTP binding domain TVD_03675 PF08364 Bacterial translation initiation factor IF-2 associated region TVD_03675 PF04760 Translation initiation factor IF-2, N-terminal region TVD_03680 PF02033 Ribosome-binding factor A TVD_03685 PF09157 Pseudouridine synthase II TruB, C-terminal TVD_03685 PF16198 tRNA pseudouridylate synthase B C-terminal domain TVD_03685 PF01509 TruB family pseudouridylate synthase (N terminal domain) TVD_03690 PF00312 Ribosomal protein S15 TVD_03695 PF00013 KH domain TVD_03695 PF01138 3' exoribonuclease family, domain 1 TVD_03695 PF03725 3' exoribonuclease family, domain 2 TVD_03695 PF00575 S1 RNA binding domain TVD_03695 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TVD_03700 PF08241 Methyltransferase domain TVD_03710 PF14403 Circularly permuted ATP-grasp type 2 TVD_03750 PF01844 HNH endonuclease TVD_03755 PF00990 Diguanylate cyclase, GGDEF domain TVD_03760 PF00563 EAL domain TVD_03760 PF00990 Diguanylate cyclase, GGDEF domain TVD_03760 PF08448 PAS fold TVD_03785 PF08534 Redoxin TVD_03800 PF00578 AhpC/TSA family TVD_03805 PF00990 Diguanylate cyclase, GGDEF domain TVD_03805 PF17158 Membrane-associated sensor, integral membrane domain TVD_03820 PF00440 Bacterial regulatory proteins, tetR family TVD_03820 PF08359 YsiA-like protein, C-terminal region TVD_03835 PF00990 Diguanylate cyclase, GGDEF domain TVD_03835 PF08448 PAS fold TVD_03840 PF01061 ABC-2 type transporter TVD_03845 PF00005 ABC transporter TVD_03845 PF13732 Domain of unknown function (DUF4162) TVD_03850 PF01741 Large-conductance mechanosensitive channel, MscL TVD_03855 PF07732 Multicopper oxidase TVD_03865 PF12823 Domain of unknown function (DUF3817) TVD_03885 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system TVD_03890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_03890 PF00672 HAMP domain TVD_03890 PF12729 Four helix bundle sensory module for signal transduction TVD_03915 PF00391 PEP-utilising enzyme, mobile domain TVD_03915 PF00224 Pyruvate kinase, barrel domain TVD_03915 PF02887 Pyruvate kinase, alpha/beta domain TVD_03940 PF03600 Citrate transporter TVD_03940 PF02080 TrkA-C domain TVD_03960 PF00005 ABC transporter TVD_03960 PF03459 TOBE domain TVD_03965 PF00528 Binding-protein-dependent transport system inner membrane component TVD_03975 PF03459 TOBE domain TVD_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVD_03980 PF13193 AMP-binding enzyme C-terminal domain TVD_03980 PF00501 AMP-binding enzyme TVD_03980 PF16177 Acetyl-coenzyme A synthetase N-terminus TVD_03995 PF00474 Sodium:solute symporter family TVD_04005 PF01380 SIS domain TVD_04005 PF00571 CBS domain TVD_04030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVD_04030 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_04035 PF08534 Redoxin TVD_04035 PF00462 Glutaredoxin TVD_04040 PF12169 DNA polymerase III subunits gamma and tau domain III TVD_04040 PF12170 DNA polymerase III tau subunit V interacting with alpha TVD_04045 PF02575 YbaB/EbfC DNA-binding family TVD_04050 PF02132 RecR protein TVD_04050 PF13662 Toprim domain TVD_04055 PF01230 HIT domain TVD_04065 PF03193 RsgA GTPase TVD_04070 PF01329 Pterin 4 alpha carbinolamine dehydratase TVD_04080 PF00929 Exonuclease TVD_04085 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TVD_04085 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TVD_04090 PF01235 Sodium:alanine symporter family TVD_04095 PF02535 ZIP Zinc transporter TVD_04100 PF01571 Aminomethyltransferase folate-binding domain TVD_04100 PF08669 Glycine cleavage T-protein C-terminal barrel domain TVD_04105 PF01597 Glycine cleavage H-protein TVD_04110 PF02347 Glycine cleavage system P-protein TVD_04115 PF08534 Redoxin TVD_04120 PF02347 Glycine cleavage system P-protein TVD_04125 PF00990 Diguanylate cyclase, GGDEF domain TVD_04125 PF08448 PAS fold TVD_04130 PF08448 PAS fold TVD_04130 PF00990 Diguanylate cyclase, GGDEF domain TVD_04135 PF01219 Prokaryotic diacylglycerol kinase TVD_04140 PF01297 Zinc-uptake complex component A periplasmic TVD_04145 PF00005 ABC transporter TVD_04150 PF00950 ABC 3 transport family TVD_04155 PF00186 Dihydrofolate reductase TVD_04160 PF00303 Thymidylate synthase TVD_04165 PF01790 Prolipoprotein diacylglyceryl transferase TVD_04170 PF03190 Protein of unknown function, DUF255 TVD_04175 PF00581 Rhodanese-like domain TVD_04185 PF01553 Acyltransferase TVD_04190 PF00534 Glycosyl transferases group 1 TVD_04190 PF13439 Glycosyltransferase Family 4 TVD_04195 PF01569 PAP2 superfamily TVD_04205 PF00266 Aminotransferase class-V TVD_04210 PF02754 Cysteine-rich domain TVD_04210 PF13183 4Fe-4S dicluster domain TVD_04215 PF01565 FAD binding domain TVD_04235 PF00464 Serine hydroxymethyltransferase TVD_04240 PF03477 ATP cone domain TVD_04245 PF01872 RibD C-terminal domain TVD_04245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TVD_04250 PF00677 Lumazine binding domain TVD_04255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TVD_04255 PF00925 GTP cyclohydrolase II TVD_04260 PF00885 6,7-dimethyl-8-ribityllumazine synthase TVD_04265 PF01029 NusB family TVD_04270 PF02769 AIR synthase related protein, C-terminal domain TVD_04270 PF00586 AIR synthase related protein, N-terminal domain TVD_04275 PF04608 Phosphatidylglycerophosphatase A TVD_04280 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin TVD_04310 PF00072 Response regulator receiver domain TVD_04310 PF02954 Bacterial regulatory protein, Fis family TVD_04310 PF00158 Sigma-54 interaction domain TVD_04315 PF08447 PAS fold TVD_04315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_04315 PF00989 PAS fold TVD_04315 PF00512 His Kinase A (phospho-acceptor) domain TVD_04320 PF00749 tRNA synthetases class I (E and Q), catalytic domain TVD_04325 PF01258 Prokaryotic dksA/traR C4-type zinc finger TVD_04330 PF13419 Haloacid dehalogenase-like hydrolase TVD_04335 PF01914 MarC family integral membrane protein TVD_04340 PF00291 Pyridoxal-phosphate dependent enzyme TVD_04350 PF05958 tRNA (Uracil-5-)-methyltransferase TVD_04355 PF01618 MotA/TolQ/ExbB proton channel family TVD_04360 PF02472 Biopolymer transport protein ExbD/TolR TVD_04365 PF00664 ABC transporter transmembrane region TVD_04365 PF00005 ABC transporter TVD_04375 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TVD_04380 PF03966 Trm112p-like protein TVD_04385 PF02348 Cytidylyltransferase TVD_04405 PF13419 Haloacid dehalogenase-like hydrolase TVD_04425 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TVD_04425 PF06594 Haemolysin-type calcium binding protein related domain TVD_04435 PF13533 Biotin-lipoyl like TVD_04440 PF03412 Peptidase C39 family TVD_04440 PF00005 ABC transporter TVD_04440 PF00664 ABC transporter transmembrane region TVD_04445 PF07977 FabA-like domain TVD_04460 PF08239 Bacterial SH3 domain TVD_04470 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TVD_04490 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TVD_04495 PF03334 Na+/H+ antiporter subunit TVD_04525 PF02698 DUF218 domain TVD_04540 PF03631 Virulence factor BrkB TVD_04560 PF00873 AcrB/AcrD/AcrF family TVD_04570 PF10576 Iron-sulfur binding domain of endonuclease III TVD_04570 PF00730 HhH-GPD superfamily base excision DNA repair protein TVD_04570 PF00633 Helix-hairpin-helix motif TVD_04580 PF02508 Rnf-Nqr subunit, membrane protein TVD_04585 PF04205 FMN-binding domain TVD_04590 PF03116 NQR2, RnfD, RnfE family TVD_04595 PF12838 4Fe-4S dicluster domain TVD_04595 PF13375 RnfC Barrel sandwich hybrid domain TVD_04595 PF10531 SLBB domain TVD_04595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TVD_04600 PF04060 Putative Fe-S cluster TVD_04605 PF02508 Rnf-Nqr subunit, membrane protein TVD_04615 PF00596 Class II Aldolase and Adducin N-terminal domain TVD_04620 PF01588 Putative tRNA binding domain TVD_04620 PF09334 tRNA synthetases class I (M) TVD_04625 PF10609 NUBPL iron-transfer P-loop NTPase TVD_04630 PF00692 dUTPase TVD_04635 PF00696 Amino acid kinase family TVD_04655 PF00325 Bacterial regulatory proteins, crp family TVD_04655 PF00027 Cyclic nucleotide-binding domain TVD_04670 PF00593 TonB dependent receptor TVD_04670 PF07715 TonB-dependent Receptor Plug Domain TVD_04675 PF01923 Cobalamin adenosyltransferase TVD_04680 PF02514 CobN/Magnesium Chelatase TVD_04695 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TVD_04695 PF12557 Cob(I)alamin adenosyltransferase N terminal TVD_04700 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TVD_04700 PF07685 CobB/CobQ-like glutamine amidotransferase domain TVD_04705 PF14824 Sirohaem biosynthesis protein central TVD_04705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_04705 PF10414 Sirohaem synthase dimerisation region TVD_04710 PF01888 CbiD TVD_04715 PF00005 ABC transporter TVD_04720 PF01061 ABC-2 type transporter TVD_04725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TVD_04730 PF02570 Precorrin-8X methylmutase TVD_04735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_04740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_04745 PF02571 Precorrin-6x reductase CbiJ/CobK TVD_04750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_04760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TVD_04780 PF03150 Di-haem cytochrome c peroxidase TVD_04780 PF00034 Cytochrome c TVD_04790 PF00749 tRNA synthetases class I (E and Q), catalytic domain TVD_04810 PF13191 AAA ATPase domain TVD_04810 PF00211 Adenylate and Guanylate cyclase catalytic domain TVD_04825 PF03441 FAD binding domain of DNA photolyase TVD_04825 PF00875 DNA photolyase TVD_04830 PF04244 Deoxyribodipyrimidine photo-lyase-related protein TVD_04835 PF13411 MerR HTH family regulatory protein TVD_04840 PF03190 Protein of unknown function, DUF255 TVD_04845 PF01385 Probable transposase TVD_04845 PF07282 Putative transposase DNA-binding domain TVD_04845 PF12323 Helix-turn-helix domain TVD_04855 PF00459 Inositol monophosphatase family TVD_04860 PF00588 SpoU rRNA Methylase family TVD_04865 PF00132 Bacterial transferase hexapeptide (six repeats) TVD_04870 PF02082 Transcriptional regulator TVD_04875 PF00266 Aminotransferase class-V TVD_04880 PF01592 NifU-like N terminal domain TVD_04885 PF01521 Iron-sulphur cluster biosynthesis TVD_04890 PF07743 HSCB C-terminal oligomerisation domain TVD_04895 PF00012 Hsp70 protein TVD_04900 PF00111 2Fe-2S iron-sulfur cluster binding domain TVD_04905 PF04384 Iron-sulphur cluster assembly TVD_04910 PF00334 Nucleoside diphosphate kinase TVD_04915 PF04055 Radical SAM superfamily TVD_04925 PF13464 Domain of unknown function (DUF4115) TVD_04930 PF13393 Histidyl-tRNA synthetase TVD_04930 PF03129 Anticodon binding domain TVD_04940 PF13360 PQQ-like domain TVD_04945 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TVD_04945 PF01926 50S ribosome-binding GTPase TVD_04950 PF00155 Aminotransferase class I and II TVD_04970 PF00209 Sodium:neurotransmitter symporter family TVD_04975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVD_04975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVD_04975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVD_04975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVD_04985 PF00990 Diguanylate cyclase, GGDEF domain TVD_04985 PF03707 Bacterial signalling protein N terminal repeat TVD_04985 PF00563 EAL domain TVD_04990 PF13426 PAS domain TVD_04990 PF00512 His Kinase A (phospho-acceptor) domain TVD_04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_04990 PF13188 PAS domain TVD_04990 PF00989 PAS fold TVD_04995 PF10609 NUBPL iron-transfer P-loop NTPase TVD_05000 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TVD_05020 PF00355 Rieske [2Fe-2S] domain TVD_05040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TVD_05045 PF14489 QueF-like protein TVD_05050 PF06470 SMC proteins Flexible Hinge Domain TVD_05050 PF02463 RecF/RecN/SMC N terminal domain TVD_05055 PF04354 ZipA, C-terminal FtsZ-binding domain TVD_05060 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TVD_05060 PF03120 NAD-dependent DNA ligase OB-fold domain TVD_05060 PF01653 NAD-dependent DNA ligase adenylation domain TVD_05060 PF00533 BRCA1 C Terminus (BRCT) domain TVD_05060 PF12826 Helix-hairpin-helix motif TVD_05070 PF02719 Polysaccharide biosynthesis protein TVD_05075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVD_05075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVD_05075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TVD_05085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TVD_05085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TVD_05100 PF02719 Polysaccharide biosynthesis protein TVD_05105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TVD_05110 PF02348 Cytidylyltransferase TVD_05125 PF03102 NeuB family TVD_05125 PF08666 SAF domain TVD_05170 PF00535 Glycosyl transferase family 2 TVD_05175 PF02371 Transposase IS116/IS110/IS902 family TVD_05175 PF01548 Transposase TVD_05180 PF01370 NAD dependent epimerase/dehydratase family TVD_05185 PF02371 Transposase IS116/IS110/IS902 family TVD_05185 PF01548 Transposase TVD_05220 PF02397 Bacterial sugar transferase TVD_05255 PF03707 Bacterial signalling protein N terminal repeat TVD_05255 PF00990 Diguanylate cyclase, GGDEF domain TVD_05255 PF00563 EAL domain TVD_05265 PF07662 Na+ dependent nucleoside transporter C-terminus TVD_05265 PF07670 Nucleoside recognition TVD_05265 PF01773 Na+ dependent nucleoside transporter N-terminus TVD_05270 PF17946 RecC C-terminal domain TVD_05275 PF00580 UvrD/REP helicase N-terminal domain TVD_05275 PF12705 PD-(D/E)XK nuclease superfamily TVD_05275 PF13361 UvrD-like helicase C-terminal domain TVD_05280 PF13538 UvrD-like helicase C-terminal domain TVD_05295 PF08448 PAS fold TVD_05295 PF00990 Diguanylate cyclase, GGDEF domain TVD_05295 PF00563 EAL domain TVD_05300 PF00990 Diguanylate cyclase, GGDEF domain TVD_05300 PF03707 Bacterial signalling protein N terminal repeat TVD_05300 PF00563 EAL domain TVD_05305 PF00270 DEAD/DEAH box helicase TVD_05305 PF00271 Helicase conserved C-terminal domain TVD_05310 PF00672 HAMP domain TVD_05310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_05330 PF03462 PCRF domain TVD_05330 PF00472 RF-1 domain TVD_05335 PF00152 tRNA synthetases class II (D, K and N) TVD_05335 PF01336 OB-fold nucleic acid binding domain TVD_05345 PF00916 Sulfate permease family TVD_05345 PF01740 STAS domain TVD_05355 PF00989 PAS fold TVD_05355 PF00512 His Kinase A (phospho-acceptor) domain TVD_05355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_05360 PF00158 Sigma-54 interaction domain TVD_05360 PF00072 Response regulator receiver domain TVD_05360 PF02954 Bacterial regulatory protein, Fis family TVD_05365 PF00128 Alpha amylase, catalytic domain TVD_05365 PF02806 Alpha amylase, C-terminal all-beta domain TVD_05365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TVD_05370 PF00483 Nucleotidyl transferase TVD_05380 PF02446 4-alpha-glucanotransferase TVD_05400 PF04298 Putative neutral zinc metallopeptidase TVD_05405 PF00924 Mechanosensitive ion channel TVD_05410 PF00912 Transglycosylase TVD_05435 PF00873 AcrB/AcrD/AcrF family TVD_05440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVD_05440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVD_05450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TVD_05450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TVD_05460 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TVD_05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVD_05475 PF00330 Aconitase family (aconitate hydratase) TVD_05480 PF00694 Aconitase C-terminal domain TVD_05485 PF00180 Isocitrate/isopropylmalate dehydrogenase TVD_05490 PF01118 Semialdehyde dehydrogenase, NAD binding domain TVD_05490 PF02774 Semialdehyde dehydrogenase, dimerisation domain TVD_05505 PF01416 tRNA pseudouridine synthase TVD_05510 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TVD_05515 PF00291 Pyridoxal-phosphate dependent enzyme TVD_05520 PF00290 Tryptophan synthase alpha chain TVD_05525 PF01039 Carboxyl transferase domain TVD_05525 PF17848 Acetyl-coA carboxylase zinc finger domain TVD_05530 PF08245 Mur ligase middle domain TVD_05530 PF02875 Mur ligase family, glutamate ligase domain TVD_05540 PF02674 Colicin V production protein TVD_05545 PF00156 Phosphoribosyl transferase domain TVD_05550 PF17969 L,D-transpeptidase C-terminal domain TVD_05550 PF03734 L,D-transpeptidase catalytic domain TVD_05555 PF02082 Transcriptional regulator TVD_05560 PF01841 Transglutaminase-like superfamily TVD_05560 PF13559 Domain of unknown function (DUF4129) TVD_05560 PF11992 Domain of unknown function (DUF3488) TVD_05570 PF17863 AAA lid domain TVD_05570 PF07726 ATPase family associated with various cellular activities (AAA) TVD_05575 PF02405 Permease MlaE TVD_05580 PF00005 ABC transporter TVD_05595 PF00255 Glutathione peroxidase TVD_05600 PF14437 MafB19-like deaminase TVD_05605 PF06271 RDD family TVD_05620 PF02547 Queuosine biosynthesis protein TVD_05625 PF01702 Queuine tRNA-ribosyltransferase TVD_05630 PF02699 Preprotein translocase subunit TVD_05635 PF07549 SecD/SecF GG Motif TVD_05635 PF13721 SecD export protein N-terminal TM region TVD_05635 PF02355 Protein export membrane protein TVD_05640 PF07549 SecD/SecF GG Motif TVD_05640 PF02355 Protein export membrane protein TVD_05650 PF00877 NlpC/P60 family TVD_05665 PF00905 Penicillin binding protein transpeptidase domain TVD_05665 PF14814 Bifunctional transglycosylase second domain TVD_05665 PF00912 Transglycosylase TVD_05675 PF04851 Type III restriction enzyme, res subunit TVD_05675 PF13307 Helicase C-terminal domain TVD_05680 PF00814 Glycoprotease family TVD_05685 PF01142 tRNA pseudouridine synthase D (TruD) TVD_05690 PF13426 PAS domain TVD_05690 PF01740 STAS domain TVD_05705 PF01975 Survival protein SurE TVD_05715 PF09335 SNARE associated Golgi protein TVD_05720 PF01476 LysM domain TVD_05720 PF01551 Peptidase family M23 TVD_05725 PF00140 Sigma-70 factor, region 1.2 TVD_05725 PF04542 Sigma-70 region 2 TVD_05725 PF04545 Sigma-70, region 4 TVD_05725 PF04539 Sigma-70 region 3 TVD_05730 PF04430 Protein of unknown function (DUF498/DUF598) TVD_05735 PF00155 Aminotransferase class I and II TVD_05740 PF00742 Homoserine dehydrogenase TVD_05740 PF03447 Homoserine dehydrogenase, NAD binding domain TVD_05740 PF01842 ACT domain TVD_05745 PF00291 Pyridoxal-phosphate dependent enzyme TVD_05750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TVD_05750 PF01872 RibD C-terminal domain TVD_05755 PF00925 GTP cyclohydrolase II TVD_05760 PF02633 Creatinine amidohydrolase TVD_05785 PF03922 OmpW family TVD_05795 PF07556 Protein of unknown function (DUF1538) TVD_05810 PF00990 Diguanylate cyclase, GGDEF domain TVD_05810 PF08448 PAS fold TVD_05820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TVD_05820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TVD_05820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TVD_05820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TVD_05825 PF00483 Nucleotidyl transferase TVD_05825 PF01050 Mannose-6-phosphate isomerase TVD_05830 PF16363 GDP-mannose 4,6 dehydratase TVD_05835 PF01370 NAD dependent epimerase/dehydratase family TVD_05845 PF01336 OB-fold nucleic acid binding domain TVD_05845 PF02811 PHP domain TVD_05845 PF14579 Helix-hairpin-helix motif TVD_05845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TVD_05845 PF07733 Bacterial DNA polymerase III alpha NTPase domain TVD_05850 PF13396 Phospholipase_D-nuclease N-terminal TVD_05850 PF13091 PLD-like domain TVD_05865 PF08241 Methyltransferase domain TVD_05905 PF08364 Bacterial translation initiation factor IF-2 associated region TVD_05905 PF00009 Elongation factor Tu GTP binding domain TVD_05905 PF04760 Translation initiation factor IF-2, N-terminal region TVD_05905 PF11987 Translation-initiation factor 2 TVD_05910 PF02586 SOS response associated peptidase (SRAP) TVD_05920 PF01527 Transposase TVD_05925 PF00665 Integrase core domain TVD_05925 PF13333 Integrase core domain TVD_05925 PF13276 HTH-like domain TVD_05955 PF03747 ADP-ribosylglycohydrolase TVD_06010 PF06271 RDD family TVD_06020 PF00072 Response regulator receiver domain TVD_06020 PF00990 Diguanylate cyclase, GGDEF domain TVD_06025 PF00004 ATPase family associated with various cellular activities (AAA) TVD_06025 PF17862 AAA+ lid domain TVD_06025 PF01434 Peptidase family M41 TVD_06060 PF02384 N-6 DNA Methylase TVD_06060 PF12161 HsdM N-terminal domain TVD_06085 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TVD_06085 PF18766 SWI2/SNF2 ATPase TVD_06085 PF11867 Domain of unknown function (DUF3387) TVD_06155 PF00580 UvrD/REP helicase N-terminal domain TVD_06155 PF13361 UvrD-like helicase C-terminal domain TVD_06170 PF12167 Arm DNA-binding domain TVD_06170 PF00589 Phage integrase family TVD_06190 PF13091 PLD-like domain TVD_06195 PF06271 RDD family TVD_06205 PF00274 Fructose-bisphosphate aldolase class-I TVD_06210 PF00149 Calcineurin-like phosphoesterase TVD_06210 PF02872 5'-nucleotidase, C-terminal domain TVD_06215 PF18125 RlmM ferredoxin-like domain TVD_06215 PF01728 FtsJ-like methyltransferase TVD_06220 PF01894 Uncharacterised protein family UPF0047 TVD_06225 PF02769 AIR synthase related protein, C-terminal domain TVD_06225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TVD_06225 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal TVD_06235 PF00158 Sigma-54 interaction domain TVD_06235 PF01590 GAF domain TVD_06240 PF02954 Bacterial regulatory protein, Fis family TVD_06240 PF00158 Sigma-54 interaction domain TVD_06245 PF02049 Flagellar hook-basal body complex protein FliE TVD_06250 PF08345 Flagellar M-ring protein C-terminal TVD_06250 PF01514 Secretory protein of YscJ/FliF family TVD_06255 PF01706 FliG C-terminal domain TVD_06255 PF14841 FliG middle domain TVD_06255 PF14842 FliG N-terminal domain TVD_06265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVD_06265 PF18269 T3SS EscN ATPase C-terminal domain TVD_06275 PF02120 Flagellar hook-length control protein FliK TVD_06285 PF02154 Flagellar motor switch protein FliM TVD_06285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TVD_06290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TVD_06295 PF04347 Flagellar biosynthesis protein, FliO TVD_06300 PF00813 FliP family TVD_06305 PF01313 Bacterial export proteins, family 3 TVD_06310 PF01311 Bacterial export proteins, family 1 TVD_06315 PF01312 FlhB HrpN YscU SpaS Family TVD_06320 PF00771 FHIPEP family TVD_06325 PF00448 SRP54-type protein, GTPase domain TVD_06330 PF10609 NUBPL iron-transfer P-loop NTPase TVD_06335 PF04542 Sigma-70 region 2 TVD_06335 PF04545 Sigma-70, region 4 TVD_06335 PF04539 Sigma-70 region 3 TVD_06340 PF00072 Response regulator receiver domain TVD_06345 PF04344 Chemotaxis phosphatase, CheZ TVD_06350 PF02895 Signal transducing histidine kinase, homodimeric domain TVD_06350 PF01584 CheW-like domain TVD_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_06350 PF01627 Hpt domain TVD_06350 PF07194 P2 response regulator binding domain TVD_06355 PF00072 Response regulator receiver domain TVD_06355 PF01339 CheB methylesterase TVD_06360 PF01618 MotA/TolQ/ExbB proton channel family TVD_06365 PF00691 OmpA family TVD_06365 PF13677 Membrane MotB of proton-channel complex MotA/MotB TVD_06370 PF13614 AAA domain TVD_06380 PF01584 CheW-like domain TVD_06405 PF01451 Low molecular weight phosphotyrosine protein phosphatase TVD_06410 PF10150 Ribonuclease E/G family TVD_06410 PF12111 Polyribonucleotide phosphorylase C terminal TVD_06410 PF00575 S1 RNA binding domain TVD_06415 PF01479 S4 domain TVD_06415 PF00849 RNA pseudouridylate synthase TVD_06420 PF13419 Haloacid dehalogenase-like hydrolase TVD_06425 PF01343 Peptidase family S49 TVD_06435 PF00271 Helicase conserved C-terminal domain TVD_06435 PF17757 UvrB interaction domain TVD_06435 PF00270 DEAD/DEAH box helicase TVD_06435 PF02559 CarD-like/TRCF domain TVD_06435 PF03461 TRCF domain TVD_06440 PF00795 Carbon-nitrogen hydrolase TVD_06445 PF04371 Porphyromonas-type peptidyl-arginine deiminase TVD_06455 PF02687 FtsX-like permease family TVD_06455 PF12704 MacB-like periplasmic core domain TVD_06460 PF00005 ABC transporter TVD_06470 PF00753 Metallo-beta-lactamase superfamily TVD_06470 PF03772 Competence protein TVD_06475 PF01008 Initiation factor 2 subunit family TVD_06480 PF00521 DNA gyrase/topoisomerase IV, subunit A TVD_06480 PF03989 DNA gyrase C-terminal domain, beta-propeller TVD_06485 PF00266 Aminotransferase class-V TVD_06490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TVD_06490 PF01842 ACT domain TVD_06490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TVD_06495 PF01817 Chorismate mutase type II TVD_06495 PF00800 Prephenate dehydratase TVD_06495 PF01842 ACT domain TVD_06500 PF00155 Aminotransferase class I and II TVD_06505 PF01842 ACT domain TVD_06505 PF02153 Prephenate dehydrogenase TVD_06510 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TVD_06515 PF02224 Cytidylate kinase TVD_06520 PF00575 S1 RNA binding domain TVD_06525 PF00216 Bacterial DNA-binding protein TVD_06535 PF18073 Rubredoxin metal binding domain TVD_06540 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TVD_06545 PF10531 SLBB domain TVD_06550 PF00483 Nucleotidyl transferase TVD_06560 PF00920 Dehydratase family TVD_06575 PF00596 Class II Aldolase and Adducin N-terminal domain TVD_06580 PF01322 Cytochrome C' TVD_06585 PF00034 Cytochrome c TVD_06650 PF04851 Type III restriction enzyme, res subunit TVD_06650 PF17757 UvrB interaction domain TVD_06650 PF02151 UvrB/uvrC motif TVD_06650 PF12344 Ultra-violet resistance protein B TVD_06650 PF00271 Helicase conserved C-terminal domain TVD_06655 PF00933 Glycosyl hydrolase family 3 N terminal domain TVD_06670 PF01048 Phosphorylase superfamily TVD_06675 PF00202 Aminotransferase class-III TVD_06685 PF00266 Aminotransferase class-V TVD_06695 PF09115 DNA polymerase III, delta subunit, C terminal TVD_06700 PF02223 Thymidylate kinase TVD_06705 PF02618 YceG-like family TVD_06710 PF01063 Amino-transferase class IV TVD_06715 PF00425 chorismate binding enzyme TVD_06715 PF04715 Anthranilate synthase component I, N terminal region TVD_06720 PF00109 Beta-ketoacyl synthase, N-terminal domain TVD_06720 PF02801 Beta-ketoacyl synthase, C-terminal domain TVD_06725 PF00550 Phosphopantetheine attachment site TVD_06735 PF00698 Acyl transferase domain TVD_06740 PF01176 Translation initiation factor 1A / IF-1 TVD_06745 PF17871 AAA lid domain TVD_06745 PF07724 AAA domain (Cdc48 subfamily) TVD_06745 PF00004 ATPase family associated with various cellular activities (AAA) TVD_06745 PF10431 C-terminal, D2-small domain, of ClpB protein TVD_06745 PF02861 Clp amino terminal domain, pathogenicity island component TVD_06750 PF02617 ATP-dependent Clp protease adaptor protein ClpS TVD_06755 PF00180 Isocitrate/isopropylmalate dehydrogenase TVD_06760 PF00293 NUDIX domain TVD_06770 PF04356 Protein of unknown function (DUF489) TVD_06775 PF00330 Aconitase family (aconitate hydratase) TVD_06775 PF00694 Aconitase C-terminal domain TVD_06790 PF03707 Bacterial signalling protein N terminal repeat TVD_06790 PF00990 Diguanylate cyclase, GGDEF domain TVD_06790 PF00563 EAL domain TVD_06795 PF10415 Fumarase C C-terminus TVD_06795 PF00206 Lyase TVD_06800 PF00206 Lyase TVD_06800 PF08328 Adenylosuccinate lyase C-terminal TVD_06805 PF08007 Cupin superfamily protein TVD_06810 PF01207 Dihydrouridine synthase (Dus) TVD_06815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TVD_06815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TVD_06820 PF00883 Cytosol aminopeptidase family, catalytic domain TVD_06820 PF02789 Cytosol aminopeptidase family, N-terminal domain TVD_06825 PF00005 ABC transporter TVD_06830 PF01061 ABC-2 type transporter TVD_06835 PF01476 LysM domain TVD_06835 PF08525 Opacity-associated protein A N-terminal motif TVD_06835 PF01551 Peptidase family M23 TVD_06840 PF05430 S-adenosyl-L-methionine-dependent methyltransferase TVD_06840 PF01266 FAD dependent oxidoreductase TVD_06845 PF08448 PAS fold TVD_06845 PF00990 Diguanylate cyclase, GGDEF domain TVD_06845 PF00563 EAL domain TVD_06845 PF08447 PAS fold TVD_06860 PF01435 Peptidase family M48 TVD_06865 PF04011 LemA family TVD_06870 PF01618 MotA/TolQ/ExbB proton channel family TVD_06875 PF13677 Membrane MotB of proton-channel complex MotA/MotB TVD_06875 PF00691 OmpA family TVD_06885 PF00563 EAL domain TVD_06885 PF03707 Bacterial signalling protein N terminal repeat TVD_06885 PF00990 Diguanylate cyclase, GGDEF domain TVD_06905 PF13472 GDSL-like Lipase/Acylhydrolase family TVD_06910 PF00005 ABC transporter TVD_06920 PF02673 Bacitracin resistance protein BacA TVD_06925 PF00672 HAMP domain TVD_06925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_06930 PF02082 Transcriptional regulator TVD_06950 PF04055 Radical SAM superfamily TVD_06955 PF09350 Domain of unknown function (DUF1992) TVD_06960 PF03707 Bacterial signalling protein N terminal repeat TVD_06960 PF00563 EAL domain TVD_06960 PF00990 Diguanylate cyclase, GGDEF domain TVD_06970 PF01979 Amidohydrolase family TVD_06975 PF02594 Uncharacterised ACR, YggU family COG1872 TVD_06980 PF01209 ubiE/COQ5 methyltransferase family TVD_06990 PF12146 Serine aminopeptidase, S33 TVD_06995 PF02824 TGS domain TVD_06995 PF04607 Region found in RelA / SpoT proteins TVD_06995 PF13291 ACT domain TVD_07005 PF01541 GIY-YIG catalytic domain TVD_07015 PF02561 Flagellar protein FliS TVD_07020 PF07196 Flagellin hook IN motif TVD_07020 PF07195 Flagellar hook-associated protein 2 C-terminus TVD_07020 PF02465 Flagellar hook-associated protein 2 N-terminus TVD_07030 PF00700 Bacterial flagellin C-terminal helical region TVD_07030 PF00669 Bacterial flagellin N-terminal helical region TVD_07065 PF02654 Cobalamin-5-phosphate synthase TVD_07070 PF00300 Histidine phosphatase superfamily (branch 1) TVD_07075 PF02277 Phosphoribosyltransferase TVD_07080 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TVD_07085 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TVD_07085 PF07685 CobB/CobQ-like glutamine amidotransferase domain TVD_07090 PF00155 Aminotransferase class I and II TVD_07095 PF17113 Regulatory signalling modulator protein AmpE TVD_07095 PF03186 CobD/Cbib protein TVD_07100 PF00881 Nitroreductase family TVD_07105 PF01497 Periplasmic binding protein TVD_07110 PF01032 FecCD transport family TVD_07115 PF00005 ABC transporter TVD_07125 PF05726 Pirin C-terminal cupin domain TVD_07125 PF02678 Pirin TVD_07135 PF02542 YgbB family TVD_07140 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TVD_07145 PF04977 Septum formation initiator TVD_07150 PF03952 Enolase, N-terminal domain TVD_07150 PF00113 Enolase, C-terminal TIM barrel domain TVD_07155 PF00793 DAHP synthetase I family TVD_07160 PF06418 CTP synthase N-terminus TVD_07160 PF00117 Glutamine amidotransferase class-I TVD_07170 PF13426 PAS domain TVD_07170 PF08448 PAS fold TVD_07170 PF08447 PAS fold TVD_07170 PF05231 MASE1 TVD_07170 PF00990 Diguanylate cyclase, GGDEF domain TVD_07170 PF00563 EAL domain TVD_07175 PF09345 Domain of unknown function (DUF1987) TVD_07190 PF01171 PP-loop family TVD_07190 PF11734 TilS substrate C-terminal domain TVD_07190 PF09179 TilS substrate binding domain TVD_07195 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TVD_07200 PF14579 Helix-hairpin-helix motif TVD_07200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TVD_07200 PF02811 PHP domain TVD_07200 PF07733 Bacterial DNA polymerase III alpha NTPase domain TVD_07200 PF01336 OB-fold nucleic acid binding domain TVD_07205 PF01351 Ribonuclease HII TVD_07210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TVD_07210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TVD_07215 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TVD_07220 PF02684 Lipid-A-disaccharide synthetase TVD_07225 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TVD_07225 PF00132 Bacterial transferase hexapeptide (six repeats) TVD_07230 PF07977 FabA-like domain TVD_07235 PF00132 Bacterial transferase hexapeptide (six repeats) TVD_07235 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TVD_07245 PF01103 Surface antigen TVD_07245 PF07244 Surface antigen variable number repeat TVD_07250 PF13180 PDZ domain TVD_07250 PF17820 PDZ domain TVD_07250 PF02163 Peptidase family M50 TVD_07255 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TVD_07255 PF13288 DXP reductoisomerase C-terminal domain TVD_07255 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TVD_07265 PF01255 Putative undecaprenyl diphosphate synthase TVD_07270 PF01765 Ribosome recycling factor TVD_07275 PF00696 Amino acid kinase family TVD_07280 PF00889 Elongation factor TS TVD_07285 PF00318 Ribosomal protein S2 TVD_07290 PF00557 Metallopeptidase family M24 TVD_07295 PF01909 Nucleotidyltransferase domain TVD_07295 PF08335 GlnD PII-uridylyltransferase TVD_07295 PF01842 ACT domain TVD_07295 PF01966 HD domain TVD_07315 PF03707 Bacterial signalling protein N terminal repeat TVD_07315 PF00563 EAL domain TVD_07315 PF00990 Diguanylate cyclase, GGDEF domain TVD_07320 PF03358 NADPH-dependent FMN reductase TVD_07330 PF01979 Amidohydrolase family TVD_07340 PF13419 Haloacid dehalogenase-like hydrolase TVD_07355 PF06969 HemN C-terminal domain TVD_07355 PF04055 Radical SAM superfamily TVD_07365 PF01593 Flavin containing amine oxidoreductase TVD_07370 PF00106 short chain dehydrogenase TVD_07375 PF11842 Domain of unknown function (DUF3362) TVD_07375 PF04055 Radical SAM superfamily TVD_07375 PF08497 Radical SAM N-terminal TVD_07390 PF13187 4Fe-4S dicluster domain TVD_07390 PF01645 Conserved region in glutamate synthase TVD_07395 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TVD_07395 PF01243 Pyridoxamine 5'-phosphate oxidase TVD_07415 PF00916 Sulfate permease family TVD_07415 PF01740 STAS domain TVD_07420 PF01027 Inhibitor of apoptosis-promoting Bax1 TVD_07425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TVD_07425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TVD_07430 PF04102 SlyX TVD_07435 PF04445 Putative SAM-dependent methyltransferase TVD_07450 PF04241 Protein of unknown function (DUF423) TVD_07455 PF01491 Frataxin-like domain TVD_07470 PF02403 Seryl-tRNA synthetase N-terminal domain TVD_07470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TVD_07475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TVD_07480 PF01565 FAD binding domain TVD_07480 PF02913 FAD linked oxidases, C-terminal domain TVD_07490 PF08448 PAS fold TVD_07490 PF00563 EAL domain TVD_07490 PF13426 PAS domain TVD_07490 PF08447 PAS fold TVD_07490 PF00990 Diguanylate cyclase, GGDEF domain TVD_07490 PF05231 MASE1 TVD_07495 PF00285 Citrate synthase, C-terminal domain TVD_07510 PF05139 Erythromycin esterase TVD_07510 PF00156 Phosphoribosyl transferase domain TVD_07515 PF00156 Phosphoribosyl transferase domain TVD_07515 PF01738 Dienelactone hydrolase family TVD_07520 PF00107 Zinc-binding dehydrogenase TVD_07520 PF08240 Alcohol dehydrogenase GroES-like domain TVD_07535 PF01914 MarC family integral membrane protein TVD_07540 PF07715 TonB-dependent Receptor Plug Domain TVD_07540 PF00593 TonB dependent receptor TVD_07550 PF01022 Bacterial regulatory protein, arsR family TVD_07570 PF00271 Helicase conserved C-terminal domain TVD_07570 PF00270 DEAD/DEAH box helicase TVD_07570 PF03880 DbpA RNA binding domain TVD_07585 PF00753 Metallo-beta-lactamase superfamily TVD_07595 PF05532 CsbD-like TVD_07630 PF00795 Carbon-nitrogen hydrolase TVD_07635 PF00005 ABC transporter TVD_07635 PF02687 FtsX-like permease family TVD_07635 PF12704 MacB-like periplasmic core domain TVD_07640 PF00005 ABC transporter TVD_07640 PF12704 MacB-like periplasmic core domain TVD_07640 PF02687 FtsX-like permease family TVD_07645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVD_07645 PF00529 HlyD membrane-fusion protein of T1SS TVD_07660 PF13581 Histidine kinase-like ATPase domain TVD_07665 PF01740 STAS domain TVD_07670 PF07228 Stage II sporulation protein E (SpoIIE) TVD_07670 PF00672 HAMP domain TVD_07675 PF09084 NMT1/THI5 like TVD_07680 PF03458 UPF0126 domain TVD_07685 PF11798 IMS family HHH motif TVD_07685 PF11799 impB/mucB/samB family C-terminal domain TVD_07685 PF00817 impB/mucB/samB family TVD_07690 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TVD_07690 PF10091 Putative glucoamylase TVD_07690 PF06165 Glycosyltransferase family 36 TVD_07695 PF00990 Diguanylate cyclase, GGDEF domain TVD_07695 PF03707 Bacterial signalling protein N terminal repeat TVD_07695 PF00563 EAL domain TVD_07705 PF04972 BON domain TVD_07710 PF01739 CheR methyltransferase, SAM binding domain TVD_07710 PF03705 CheR methyltransferase, all-alpha domain TVD_07710 PF08448 PAS fold TVD_07710 PF01339 CheB methylesterase TVD_07725 PF00487 Fatty acid desaturase TVD_07735 PF00581 Rhodanese-like domain TVD_07740 PF02709 N-terminal domain of galactosyltransferase TVD_07740 PF00535 Glycosyl transferase family 2 TVD_07750 PF01758 Sodium Bile acid symporter family TVD_07760 PF01022 Bacterial regulatory protein, arsR family TVD_07765 PF00155 Aminotransferase class I and II TVD_07770 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TVD_07770 PF14602 Hexapeptide repeat of succinyl-transferase TVD_07770 PF00132 Bacterial transferase hexapeptide (six repeats) TVD_07775 PF03960 ArsC family TVD_07790 PF03309 Type III pantothenate kinase TVD_07795 PF03099 Biotin/lipoate A/B protein ligase family TVD_07795 PF02237 Biotin protein ligase C terminal domain TVD_07800 PF01464 Transglycosylase SLT domain TVD_07815 PF13090 Polyphosphate kinase C-terminal domain 2 TVD_07815 PF02503 Polyphosphate kinase middle domain TVD_07815 PF13089 Polyphosphate kinase N-terminal domain TVD_07815 PF17941 Polyphosphate kinase C-terminal domain 1 TVD_07825 PF02541 Ppx/GppA phosphatase family TVD_07835 PF10017 Histidine-specific methyltransferase, SAM-dependent TVD_07860 PF00669 Bacterial flagellin N-terminal helical region TVD_07860 PF00700 Bacterial flagellin C-terminal helical region TVD_07865 PF00460 Flagella basal body rod protein TVD_07865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TVD_07870 PF10135 Rod binding protein TVD_07870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TVD_07875 PF02119 Flagellar P-ring protein TVD_07880 PF02107 Flagellar L-ring protein TVD_07885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TVD_07885 PF00460 Flagella basal body rod protein TVD_07890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TVD_07890 PF00460 Flagella basal body rod protein TVD_07895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TVD_07895 PF00460 Flagella basal body rod protein TVD_07895 PF07559 Flagellar basal body protein FlaE TVD_07900 PF03963 Flagellar hook capping protein - N-terminal region TVD_07900 PF13861 FlgD Tudor-like domain TVD_07900 PF13860 FlgD Ig-like domain TVD_07905 PF00460 Flagella basal body rod protein TVD_07905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TVD_07915 PF03705 CheR methyltransferase, all-alpha domain TVD_07915 PF01739 CheR methyltransferase, SAM binding domain TVD_07920 PF00072 Response regulator receiver domain TVD_07920 PF01584 CheW-like domain TVD_07940 PF07238 PilZ domain TVD_07940 PF07317 Flagellar regulator YcgR TVD_07955 PF00216 Bacterial DNA-binding protein TVD_07960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TVD_07960 PF03147 Ferredoxin-fold anticodon binding domain TVD_07960 PF03483 B3/4 domain TVD_07960 PF03484 tRNA synthetase B5 domain TVD_07960 PF01588 Putative tRNA binding domain TVD_07965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TVD_07965 PF01409 tRNA synthetases class II core domain (F) TVD_07970 PF00453 Ribosomal protein L20 TVD_07975 PF01632 Ribosomal protein L35 TVD_07980 PF00707 Translation initiation factor IF-3, C-terminal domain TVD_07980 PF05198 Translation initiation factor IF-3, N-terminal domain TVD_07985 PF03129 Anticodon binding domain TVD_07985 PF02824 TGS domain TVD_07985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TVD_07985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TVD_07995 PF09335 SNARE associated Golgi protein TVD_08000 PF01636 Phosphotransferase enzyme family TVD_08010 PF05114 Protein of unknown function (DUF692) TVD_08030 PF01106 NifU-like domain TVD_08035 PF03937 Flavinator of succinate dehydrogenase TVD_08040 PF13085 2Fe-2S iron-sulfur cluster binding domain TVD_08050 PF02910 Fumarate reductase flavoprotein C-term TVD_08050 PF00890 FAD binding domain TVD_08055 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TVD_08070 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_08070 PF18113 Rubredoxin binding C-terminal domain TVD_08090 PF00005 ABC transporter TVD_08100 PF00528 Binding-protein-dependent transport system inner membrane component TVD_08105 PF00158 Sigma-54 interaction domain TVD_08105 PF13185 GAF domain TVD_08105 PF02954 Bacterial regulatory protein, Fis family TVD_08115 PF00528 Binding-protein-dependent transport system inner membrane component TVD_08120 PF00005 ABC transporter TVD_08125 PF02560 Cyanate lyase C-terminal domain TVD_08130 PF00990 Diguanylate cyclase, GGDEF domain TVD_08130 PF03707 Bacterial signalling protein N terminal repeat TVD_08130 PF00563 EAL domain TVD_08135 PF00589 Phage integrase family TVD_08135 PF13356 Arm DNA-binding domain TVD_08155 PF00176 SNF2 family N-terminal domain TVD_08155 PF00271 Helicase conserved C-terminal domain TVD_08190 PF01420 Type I restriction modification DNA specificity domain TVD_08195 PF02384 N-6 DNA Methylase TVD_08225 PF01434 Peptidase family M41 TVD_08225 PF17862 AAA+ lid domain TVD_08225 PF00004 ATPase family associated with various cellular activities (AAA) TVD_08230 PF00072 Response regulator receiver domain TVD_08230 PF00990 Diguanylate cyclase, GGDEF domain TVD_08260 PF03747 ADP-ribosylglycohydrolase TVD_08285 PF02586 SOS response associated peptidase (SRAP) TVD_08290 PF13482 RNase_H superfamily TVD_08295 PF09369 Domain of unknown function (DUF1998) TVD_08295 PF00270 DEAD/DEAH box helicase TVD_08295 PF00271 Helicase conserved C-terminal domain TVD_08300 PF01726 LexA DNA binding domain TVD_08300 PF00717 Peptidase S24-like TVD_08305 PF01527 Transposase TVD_08310 PF00665 Integrase core domain TVD_08310 PF13333 Integrase core domain TVD_08310 PF13276 HTH-like domain TVD_08340 PF00072 Response regulator receiver domain TVD_08340 PF00486 Transcriptional regulatory protein, C terminal TVD_08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_08345 PF00512 His Kinase A (phospho-acceptor) domain TVD_08345 PF00989 PAS fold TVD_08345 PF11808 Phosphate regulon sensor protein PhoR TVD_08350 PF12849 PBP superfamily domain TVD_08355 PF00528 Binding-protein-dependent transport system inner membrane component TVD_08360 PF00528 Binding-protein-dependent transport system inner membrane component TVD_08365 PF00005 ABC transporter TVD_08370 PF01895 PhoU domain TVD_08395 PF00939 Sodium:sulfate symporter transmembrane region TVD_08400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TVD_08400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TVD_08405 PF00202 Aminotransferase class-III TVD_08410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVD_08410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVD_08415 PF01794 Ferric reductase like transmembrane component TVD_08420 PF00174 Oxidoreductase molybdopterin binding domain TVD_08440 PF12704 MacB-like periplasmic core domain TVD_08440 PF02687 FtsX-like permease family TVD_08445 PF00005 ABC transporter TVD_08450 PF01769 Divalent cation transporter TVD_08450 PF00571 CBS domain TVD_08450 PF03448 MgtE intracellular N domain TVD_08455 PF03448 MgtE intracellular N domain TVD_08455 PF01769 Divalent cation transporter TVD_08455 PF00571 CBS domain TVD_08480 PF00563 EAL domain TVD_08480 PF00990 Diguanylate cyclase, GGDEF domain TVD_08480 PF03707 Bacterial signalling protein N terminal repeat TVD_08485 PF00990 Diguanylate cyclase, GGDEF domain TVD_08485 PF17158 Membrane-associated sensor, integral membrane domain TVD_08500 PF03707 Bacterial signalling protein N terminal repeat TVD_08500 PF00563 EAL domain TVD_08500 PF00990 Diguanylate cyclase, GGDEF domain TVD_08505 PF01066 CDP-alcohol phosphatidyltransferase TVD_08510 PF01541 GIY-YIG catalytic domain TVD_08510 PF08459 UvrC Helix-hairpin-helix N-terminal TVD_08510 PF02151 UvrB/uvrC motif TVD_08525 PF03167 Uracil DNA glycosylase superfamily TVD_08535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TVD_08535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TVD_08540 PF02504 Fatty acid synthesis protein TVD_08545 PF01783 Ribosomal L32p protein family TVD_08555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TVD_08555 PF02785 Biotin carboxylase C-terminal domain TVD_08555 PF00289 Biotin carboxylase, N-terminal domain TVD_08560 PF02436 Conserved carboxylase domain TVD_08560 PF00682 HMGL-like TVD_08560 PF00364 Biotin-requiring enzyme TVD_08565 PF02545 Maf-like protein TVD_08585 PF01850 PIN domain TVD_08590 PF08502 LeuA allosteric (dimerisation) domain TVD_08590 PF00682 HMGL-like TVD_08595 PF13404 AsnC-type helix-turn-helix domain TVD_08595 PF01037 Lrp/AsnC ligand binding domain TVD_08600 PF00717 Peptidase S24-like TVD_08600 PF01726 LexA DNA binding domain TVD_08605 PF00154 recA bacterial DNA recombination protein TVD_08615 PF01272 Transcription elongation factor, GreA/GreB, C-term TVD_08615 PF14760 Rnk N-terminus TVD_08630 PF01597 Glycine cleavage H-protein TVD_08640 PF01814 Hemerythrin HHE cation binding domain TVD_08665 PF00849 RNA pseudouridylate synthase TVD_08665 PF01479 S4 domain TVD_08670 PF00994 Probable molybdopterin binding domain TVD_08675 PF04343 Protein of unknown function, DUF488 TVD_08680 PF13537 Glutamine amidotransferase domain TVD_08680 PF00733 Asparagine synthase TVD_08685 PF03466 LysR substrate binding domain TVD_08685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVD_08695 PF08496 Peptidase family S49 N-terminal TVD_08695 PF01343 Peptidase family S49 TVD_08710 PF08443 RimK-like ATP-grasp domain TVD_08710 PF18030 RimK PreATP-grasp domain TVD_08715 PF18030 RimK PreATP-grasp domain TVD_08715 PF08443 RimK-like ATP-grasp domain TVD_08725 PF14437 MafB19-like deaminase TVD_08735 PF00296 Luciferase-like monooxygenase TVD_08740 PF01661 Macro domain TVD_08745 PF00156 Phosphoribosyl transferase domain TVD_08750 PF00291 Pyridoxal-phosphate dependent enzyme TVD_08755 PF01258 Prokaryotic dksA/traR C4-type zinc finger TVD_08765 PF02028 BCCT, betaine/carnitine/choline family transporter TVD_08775 PF03707 Bacterial signalling protein N terminal repeat TVD_08775 PF00990 Diguanylate cyclase, GGDEF domain TVD_08775 PF00563 EAL domain TVD_08780 PF13542 Helix-turn-helix domain of transposase family ISL3 TVD_08780 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TVD_08780 PF01610 Transposase TVD_08790 PF03793 PASTA domain TVD_08790 PF00069 Protein kinase domain TVD_08815 PF04055 Radical SAM superfamily TVD_08835 PF00962 Adenosine/AMP deaminase TVD_08840 PF00072 Response regulator receiver domain TVD_08845 PF00990 Diguanylate cyclase, GGDEF domain TVD_08845 PF00072 Response regulator receiver domain TVD_08855 PF17862 AAA+ lid domain TVD_08855 PF01434 Peptidase family M41 TVD_08855 PF00004 ATPase family associated with various cellular activities (AAA) TVD_08865 PF08241 Methyltransferase domain TVD_08875 PF00990 Diguanylate cyclase, GGDEF domain TVD_08875 PF00360 Phytochrome region TVD_08875 PF00563 EAL domain TVD_08875 PF01590 GAF domain TVD_08880 PF00107 Zinc-binding dehydrogenase TVD_08890 PF00085 Thioredoxin TVD_08905 PF01734 Patatin-like phospholipase TVD_08915 PF00563 EAL domain TVD_08915 PF12792 CSS motif domain associated with EAL TVD_08940 PF00990 Diguanylate cyclase, GGDEF domain TVD_08940 PF00563 EAL domain TVD_08940 PF03707 Bacterial signalling protein N terminal repeat TVD_08960 PF08447 PAS fold TVD_08960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_08960 PF13426 PAS domain TVD_08965 PF01625 Peptide methionine sulfoxide reductase TVD_08970 PF00700 Bacterial flagellin C-terminal helical region TVD_08970 PF00669 Bacterial flagellin N-terminal helical region TVD_08975 PF11871 Domain of unknown function (DUF3391) TVD_08975 PF01966 HD domain TVD_08980 PF03707 Bacterial signalling protein N terminal repeat TVD_08980 PF00990 Diguanylate cyclase, GGDEF domain TVD_08980 PF00563 EAL domain TVD_09000 PF03473 MOSC domain TVD_09000 PF03475 3-alpha domain TVD_09005 PF02525 Flavodoxin-like fold TVD_09020 PF02652 L-lactate permease TVD_09025 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TVD_09075 PF08378 Nuclease-related domain TVD_09095 PF00535 Glycosyl transferase family 2 TVD_09100 PF08448 PAS fold TVD_09100 PF00990 Diguanylate cyclase, GGDEF domain TVD_09115 PF07676 WD40-like Beta Propeller Repeat TVD_09115 PF00326 Prolyl oligopeptidase family TVD_09120 PF00990 Diguanylate cyclase, GGDEF domain TVD_09120 PF00563 EAL domain TVD_09120 PF03707 Bacterial signalling protein N terminal repeat TVD_09135 PF04607 Region found in RelA / SpoT proteins TVD_09140 PF00268 Ribonucleotide reductase, small chain TVD_09145 PF00317 Ribonucleotide reductase, all-alpha domain TVD_09145 PF02867 Ribonucleotide reductase, barrel domain TVD_09145 PF03477 ATP cone domain TVD_09150 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_09160 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TVD_09170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TVD_09180 PF02599 Global regulator protein family TVD_09185 PF00696 Amino acid kinase family TVD_09185 PF13840 ACT domain TVD_09185 PF01842 ACT domain TVD_09190 PF02272 DHHA1 domain TVD_09190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TVD_09190 PF01411 tRNA synthetases class II (A) TVD_09200 PF02631 RecX family TVD_09205 PF00154 recA bacterial DNA recombination protein TVD_09210 PF00924 Mechanosensitive ion channel TVD_09210 PF12794 Mechanosensitive ion channel inner membrane domain 1 TVD_09210 PF12795 Mechanosensitive ion channel porin domain TVD_09215 PF02464 Competence-damaged protein TVD_09225 PF05192 MutS domain III TVD_09225 PF05190 MutS family domain IV TVD_09225 PF00488 MutS domain V TVD_09225 PF01624 MutS domain I TVD_09225 PF05188 MutS domain II TVD_09230 PF02321 Outer membrane efflux protein TVD_09235 PF00873 AcrB/AcrD/AcrF family TVD_09240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVD_09240 PF00529 HlyD membrane-fusion protein of T1SS TVD_09245 PF11953 Domain of unknown function (DUF3470) TVD_09245 PF00037 4Fe-4S binding domain TVD_09270 PF01040 UbiA prenyltransferase family TVD_09275 PF03706 Lysylphosphatidylglycerol synthase TM region TVD_09275 PF09924 Uncharacterised conserved protein (DUF2156) TVD_09280 PF04030 D-arabinono-1,4-lactone oxidase TVD_09280 PF01565 FAD binding domain TVD_09285 PF00106 short chain dehydrogenase TVD_09315 PF03334 Na+/H+ antiporter subunit TVD_09330 PF00361 Proton-conducting membrane transporter TVD_09335 PF00361 Proton-conducting membrane transporter TVD_09340 PF00361 Proton-conducting membrane transporter TVD_09350 PF00689 Cation transporting ATPase, C-terminus TVD_09350 PF00690 Cation transporter/ATPase, N-terminus TVD_09355 PF01699 Sodium/calcium exchanger protein TVD_09360 PF00512 His Kinase A (phospho-acceptor) domain TVD_09360 PF00360 Phytochrome region TVD_09360 PF08446 PAS fold TVD_09360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_09360 PF01590 GAF domain TVD_09370 PF12848 ABC transporter TVD_09370 PF00005 ABC transporter TVD_09395 PF00535 Glycosyl transferase family 2 TVD_09400 PF00990 Diguanylate cyclase, GGDEF domain TVD_09400 PF03707 Bacterial signalling protein N terminal repeat TVD_09400 PF00563 EAL domain TVD_09410 PF03466 LysR substrate binding domain TVD_09410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVD_09420 PF08406 CbbQ/NirQ/NorQ C-terminal TVD_09420 PF07728 AAA domain (dynein-related subfamily) TVD_09430 PF13614 AAA domain TVD_09440 PF00210 Ferritin-like domain TVD_09480 PF00101 Ribulose bisphosphate carboxylase, small chain TVD_09485 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain TVD_09485 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain TVD_09490 PF00873 AcrB/AcrD/AcrF family TVD_09495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TVD_09510 PF01370 NAD dependent epimerase/dehydratase family TVD_09515 PF03776 Septum formation topological specificity factor MinE TVD_09520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TVD_09525 PF05209 Septum formation inhibitor MinC, N-terminal domain TVD_09525 PF03775 Septum formation inhibitor MinC, C-terminal domain TVD_09550 PF05378 Hydantoinase/oxoprolinase N-terminal region TVD_09550 PF01968 Hydantoinase/oxoprolinase TVD_09580 PF01464 Transglycosylase SLT domain TVD_09580 PF00497 Bacterial extracellular solute-binding proteins, family 3 TVD_09590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TVD_09590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TVD_09610 PF00005 ABC transporter TVD_09615 PF01061 ABC-2 type transporter TVD_09620 PF02926 THUMP domain TVD_09620 PF10672 S-adenosylmethionine-dependent methyltransferase TVD_09620 PF01170 Putative RNA methylase family UPF0020 TVD_09635 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVD_09640 PF04079 Segregation and condensation complex subunit ScpB TVD_09645 PF02616 Segregation and condensation protein ScpA TVD_09650 PF00579 tRNA synthetases class I (W and Y) TVD_09660 PF01300 Telomere recombination TVD_09665 PF03795 YCII-related domain TVD_09685 PF00873 AcrB/AcrD/AcrF family TVD_09720 PF04551 GcpE protein TVD_09725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_09725 PF00672 HAMP domain TVD_09735 PF01618 MotA/TolQ/ExbB proton channel family TVD_09740 PF13677 Membrane MotB of proton-channel complex MotA/MotB TVD_09740 PF00691 OmpA family TVD_09745 PF07683 Cobalamin synthesis protein cobW C-terminal domain TVD_09745 PF02492 CobW/HypB/UreG, nucleotide-binding domain TVD_09750 PF01925 Sulfite exporter TauE/SafE TVD_09760 PF03707 Bacterial signalling protein N terminal repeat TVD_09760 PF13188 PAS domain TVD_09760 PF00990 Diguanylate cyclase, GGDEF domain TVD_09760 PF00563 EAL domain TVD_09770 PF01590 GAF domain TVD_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_09770 PF00512 His Kinase A (phospho-acceptor) domain TVD_09770 PF08446 PAS fold TVD_09770 PF00360 Phytochrome region TVD_09775 PF01502 Phosphoribosyl-AMP cyclohydrolase TVD_09780 PF09190 DALR domain TVD_09780 PF01406 tRNA synthetases class I (C) catalytic domain TVD_09785 PF06226 Protein of unknown function (DUF1007) TVD_09795 PF00501 AMP-binding enzyme TVD_09800 PF13686 DsrE/DsrF/DrsH-like family TVD_09840 PF00873 AcrB/AcrD/AcrF family TVD_09865 PF00534 Glycosyl transferases group 1 TVD_09865 PF13439 Glycosyltransferase Family 4 TVD_09875 PF08240 Alcohol dehydrogenase GroES-like domain TVD_09875 PF00107 Zinc-binding dehydrogenase TVD_09885 PF04264 YceI-like domain TVD_09895 PF01209 ubiE/COQ5 methyltransferase family TVD_09900 PF00860 Permease family TVD_09905 PF01227 GTP cyclohydrolase I TVD_09940 PF13673 Acetyltransferase (GNAT) domain TVD_09965 PF01494 FAD binding domain TVD_09970 PF01494 FAD binding domain TVD_09975 PF05195 Aminopeptidase P, N-terminal domain TVD_09975 PF00557 Metallopeptidase family M24 TVD_09980 PF03695 Uncharacterised protein family (UPF0149) TVD_09995 PF05164 Cell division protein ZapA TVD_10000 PF07499 RuvA, C-terminal domain TVD_10000 PF01330 RuvA N terminal domain TVD_10005 PF02075 Crossover junction endodeoxyribonuclease RuvC TVD_10010 PF01709 Transcriptional regulator TVD_10020 PF01336 OB-fold nucleic acid binding domain TVD_10020 PF00152 tRNA synthetases class II (D, K and N) TVD_10020 PF02938 GAD domain TVD_10040 PF00106 short chain dehydrogenase TVD_10045 PF07670 Nucleoside recognition TVD_10050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_10050 PF00512 His Kinase A (phospho-acceptor) domain TVD_10050 PF00989 PAS fold TVD_10065 PF00873 AcrB/AcrD/AcrF family TVD_10070 PF13533 Biotin-lipoyl like TVD_10080 PF03129 Anticodon binding domain TVD_10080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TVD_10080 PF04073 Aminoacyl-tRNA editing domain TVD_10090 PF01381 Helix-turn-helix TVD_10095 PF03600 Citrate transporter TVD_10095 PF02080 TrkA-C domain TVD_10105 PF00708 Acylphosphatase TVD_10110 PF03960 ArsC family TVD_10115 PF03358 NADPH-dependent FMN reductase TVD_10125 PF00308 Bacterial dnaA protein TVD_10130 PF01594 AI-2E family transporter TVD_10135 PF01066 CDP-alcohol phosphatidyltransferase TVD_10145 PF02769 AIR synthase related protein, C-terminal domain TVD_10145 PF00586 AIR synthase related protein, N-terminal domain TVD_10150 PF00551 Formyl transferase TVD_10160 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_10160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVD_10180 PF00563 EAL domain TVD_10180 PF00990 Diguanylate cyclase, GGDEF domain TVD_10180 PF03707 Bacterial signalling protein N terminal repeat TVD_10190 PF00313 'Cold-shock' DNA-binding domain TVD_10195 PF01435 Peptidase family M48 TVD_10200 PF03707 Bacterial signalling protein N terminal repeat TVD_10200 PF00990 Diguanylate cyclase, GGDEF domain TVD_10200 PF00563 EAL domain TVD_10205 PF01523 Putative modulator of DNA gyrase TVD_10215 PF01523 Putative modulator of DNA gyrase TVD_10220 PF00795 Carbon-nitrogen hydrolase TVD_10230 PF00575 S1 RNA binding domain TVD_10230 PF10150 Ribonuclease E/G family TVD_10235 PF01594 AI-2E family transporter TVD_10250 PF03466 LysR substrate binding domain TVD_10250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TVD_10255 PF01590 GAF domain TVD_10255 PF00360 Phytochrome region TVD_10255 PF00990 Diguanylate cyclase, GGDEF domain TVD_10255 PF00563 EAL domain TVD_10260 PF00830 Ribosomal L28 family TVD_10265 PF00471 Ribosomal protein L33 TVD_10285 PF06827 Zinc finger found in FPG and IleRS TVD_10285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TVD_10285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TVD_10290 PF00005 ABC transporter TVD_10290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TVD_10295 PF12911 N-terminal TM domain of oligopeptide transport permease C TVD_10295 PF00528 Binding-protein-dependent transport system inner membrane component TVD_10300 PF00528 Binding-protein-dependent transport system inner membrane component TVD_10305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TVD_10315 PF13145 PPIC-type PPIASE domain TVD_10330 PF00216 Bacterial DNA-binding protein TVD_10335 PF00004 ATPase family associated with various cellular activities (AAA) TVD_10335 PF05362 Lon protease (S16) C-terminal proteolytic domain TVD_10335 PF02190 ATP-dependent protease La (LON) substrate-binding domain TVD_10340 PF07724 AAA domain (Cdc48 subfamily) TVD_10340 PF06689 ClpX C4-type zinc finger TVD_10340 PF10431 C-terminal, D2-small domain, of ClpB protein TVD_10345 PF00574 Clp protease TVD_10350 PF05697 Bacterial trigger factor protein (TF) TVD_10350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVD_10350 PF05698 Bacterial trigger factor protein (TF) C-terminus TVD_10365 PF04143 Sulphur transport TVD_10370 PF06508 Queuosine biosynthesis protein QueC TVD_10375 PF04055 Radical SAM superfamily TVD_10385 PF00691 OmpA family TVD_10390 PF04052 TolB amino-terminal domain TVD_10390 PF07676 WD40-like Beta Propeller Repeat TVD_10400 PF02472 Biopolymer transport protein ExbD/TolR TVD_10405 PF01618 MotA/TolQ/ExbB proton channel family TVD_10410 PF03061 Thioesterase superfamily TVD_10415 PF17864 RuvB AAA lid domain TVD_10415 PF05496 Holliday junction DNA helicase RuvB P-loop domain TVD_10415 PF05491 RuvB C-terminal winged helix domain TVD_10420 PF05175 Methyltransferase small domain TVD_10425 PF02666 Phosphatidylserine decarboxylase TVD_10435 PF00570 HRDC domain TVD_10435 PF09382 RQC domain TVD_10435 PF00271 Helicase conserved C-terminal domain TVD_10435 PF16124 RecQ zinc-binding TVD_10435 PF00270 DEAD/DEAH box helicase TVD_10445 PF00990 Diguanylate cyclase, GGDEF domain TVD_10455 PF00005 ABC transporter TVD_10455 PF00664 ABC transporter transmembrane region TVD_10460 PF00472 RF-1 domain TVD_10470 PF03144 Elongation factor Tu domain 2 TVD_10470 PF16658 Class II release factor RF3, C-terminal domain TVD_10470 PF00009 Elongation factor Tu GTP binding domain TVD_10485 PF03167 Uracil DNA glycosylase superfamily TVD_10490 PF01066 CDP-alcohol phosphatidyltransferase TVD_10495 PF02666 Phosphatidylserine decarboxylase TVD_10500 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TVD_10500 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TVD_10505 PF10369 Small subunit of acetolactate synthase TVD_10510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TVD_10510 PF00205 Thiamine pyrophosphate enzyme, central domain TVD_10510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TVD_10515 PF01713 Smr domain TVD_10515 PF00488 MutS domain V TVD_10530 PF00850 Histone deacetylase domain TVD_10540 PF07728 AAA domain (dynein-related subfamily) TVD_10540 PF08406 CbbQ/NirQ/NorQ C-terminal TVD_10555 PF00528 Binding-protein-dependent transport system inner membrane component TVD_10560 PF00005 ABC transporter TVD_10560 PF00571 CBS domain TVD_10590 PF06968 Biotin and Thiamin Synthesis associated domain TVD_10590 PF04055 Radical SAM superfamily TVD_10600 PF10437 Bacterial lipoate protein ligase C-terminus TVD_10600 PF03099 Biotin/lipoate A/B protein ligase family TVD_10610 PF01597 Glycine cleavage H-protein TVD_10620 PF01597 Glycine cleavage H-protein TVD_10625 PF02754 Cysteine-rich domain TVD_10655 PF01206 Sulfurtransferase TusA TVD_10660 PF00581 Rhodanese-like domain TVD_10670 PF01435 Peptidase family M48 TVD_10670 PF07720 Tetratricopeptide repeat TVD_10675 PF02872 5'-nucleotidase, C-terminal domain TVD_10675 PF00149 Calcineurin-like phosphoesterase TVD_10740 PF02384 N-6 DNA Methylase TVD_10755 PF01381 Helix-turn-helix TVD_10790 PF00990 Diguanylate cyclase, GGDEF domain TVD_10795 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TVD_10795 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TVD_10800 PF00749 tRNA synthetases class I (E and Q), catalytic domain TVD_10805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TVD_10810 PF00149 Calcineurin-like phosphoesterase TVD_10815 PF04305 Protein of unknown function (DUF455) TVD_10820 PF07732 Multicopper oxidase TVD_10820 PF00394 Multicopper oxidase TVD_10820 PF07731 Multicopper oxidase TVD_10820 PF10518 TAT (twin-arginine translocation) pathway signal sequence TVD_10825 PF00403 Heavy-metal-associated domain TVD_10830 PF13091 PLD-like domain TVD_10830 PF13396 Phospholipase_D-nuclease N-terminal TVD_10835 PF01053 Cys/Met metabolism PLP-dependent enzyme TVD_10840 PF00842 Alanine racemase, C-terminal domain TVD_10840 PF01168 Alanine racemase, N-terminal domain TVD_10845 PF03796 DnaB-like helicase C terminal domain TVD_10845 PF00772 DnaB-like helicase N terminal domain TVD_10850 PF01281 Ribosomal protein L9, N-terminal domain TVD_10850 PF03948 Ribosomal protein L9, C-terminal domain TVD_10860 PF01084 Ribosomal protein S18 TVD_10865 PF01250 Ribosomal protein S6 TVD_10870 PF00588 SpoU rRNA Methylase family TVD_10870 PF08032 RNA 2'-O ribose methyltransferase substrate binding TVD_10875 PF17876 Cold shock domain TVD_10875 PF08461 Ribonuclease R winged-helix domain TVD_10875 PF08206 Ribonuclease B OB domain TVD_10875 PF00773 RNB domain TVD_10875 PF00575 S1 RNA binding domain TVD_10885 PF00709 Adenylosuccinate synthetase TVD_10890 PF13393 Histidyl-tRNA synthetase TVD_10895 PF01145 SPFH domain / Band 7 family TVD_10900 PF01145 SPFH domain / Band 7 family TVD_10905 PF01648 4'-phosphopantetheinyl transferase superfamily TVD_10910 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TVD_10915 PF11967 Recombination protein O N terminal TVD_10915 PF02565 Recombination protein O C terminal TVD_10920 PF07650 KH domain TVD_10920 PF01926 50S ribosome-binding GTPase TVD_10925 PF14622 Ribonuclease-III-like TVD_10925 PF00035 Double-stranded RNA binding motif TVD_10935 PF10502 Signal peptidase, peptidase S26 TVD_10940 PF06421 GTP-binding protein LepA C-terminus TVD_10940 PF00009 Elongation factor Tu GTP binding domain TVD_10940 PF00679 Elongation factor G C-terminus TVD_10950 PF13180 PDZ domain TVD_10960 PF17188 MucB/RseB C-terminal domain TVD_10960 PF03888 MucB/RseB N-terminal domain TVD_10970 PF04542 Sigma-70 region 2 TVD_10970 PF08281 Sigma-70, region 4 TVD_10975 PF02910 Fumarate reductase flavoprotein C-term TVD_10975 PF00890 FAD binding domain TVD_10980 PF00042 Globin TVD_10980 PF00175 Oxidoreductase NAD-binding domain TVD_10980 PF00970 Oxidoreductase FAD-binding domain TVD_10985 PF03819 MazG nucleotide pyrophosphohydrolase domain TVD_10990 PF00753 Metallo-beta-lactamase superfamily TVD_10990 PF04273 Putative phosphatase (DUF442) TVD_11020 PF04055 Radical SAM superfamily TVD_11025 PF03099 Biotin/lipoate A/B protein ligase family TVD_11030 PF04359 Protein of unknown function (DUF493) TVD_11035 PF01063 Amino-transferase class IV TVD_11040 PF00768 D-alanyl-D-alanine carboxypeptidase TVD_11040 PF07943 Penicillin-binding protein 5, C-terminal domain TVD_11045 PF03330 Lytic transglycolase TVD_11045 PF05036 Sporulation related domain TVD_11050 PF13406 Transglycosylase SLT domain TVD_11055 PF01098 Cell cycle protein TVD_11060 PF03717 Penicillin-binding Protein dimerisation domain TVD_11060 PF00905 Penicillin binding protein transpeptidase domain TVD_11065 PF00719 Inorganic pyrophosphatase TVD_11070 PF05191 Adenylate kinase, active site lid TVD_11075 PF04453 LPS transport system D TVD_11075 PF03968 OstA-like protein TVD_11080 PF09312 SurA N-terminal domain TVD_11080 PF00639 PPIC-type PPIASE domain TVD_11085 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TVD_11090 PF00398 Ribosomal RNA adenine dimethylase TVD_11100 PF04379 ApaG domain TVD_11105 PF00149 Calcineurin-like phosphoesterase TVD_11110 PF00585 C-terminal regulatory domain of Threonine dehydratase TVD_11110 PF00291 Pyridoxal-phosphate dependent enzyme TVD_11115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TVD_11130 PF13183 4Fe-4S dicluster domain TVD_11130 PF02754 Cysteine-rich domain TVD_11135 PF13333 Integrase core domain TVD_11135 PF13276 HTH-like domain TVD_11135 PF00665 Integrase core domain TVD_11140 PF01527 Transposase TVD_11155 PF00380 Ribosomal protein S9/S16 TVD_11160 PF00572 Ribosomal protein L13 TVD_11170 PF00158 Sigma-54 interaction domain TVD_11170 PF00072 Response regulator receiver domain TVD_11170 PF02954 Bacterial regulatory protein, Fis family TVD_11175 PF00512 His Kinase A (phospho-acceptor) domain TVD_11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_11180 PF00753 Metallo-beta-lactamase superfamily TVD_11185 PF01435 Peptidase family M48 TVD_11190 PF00521 DNA gyrase/topoisomerase IV, subunit A TVD_11190 PF03989 DNA gyrase C-terminal domain, beta-propeller TVD_11195 PF13091 PLD-like domain TVD_11195 PF13396 Phospholipase_D-nuclease N-terminal TVD_11200 PF03707 Bacterial signalling protein N terminal repeat TVD_11200 PF00563 EAL domain TVD_11200 PF00990 Diguanylate cyclase, GGDEF domain TVD_11205 PF00990 Diguanylate cyclase, GGDEF domain TVD_11205 PF03707 Bacterial signalling protein N terminal repeat TVD_11205 PF00563 EAL domain TVD_11220 PF01042 Endoribonuclease L-PSP TVD_11225 PF17191 RecG wedge domain TVD_11225 PF00271 Helicase conserved C-terminal domain TVD_11225 PF00270 DEAD/DEAH box helicase TVD_11230 PF01965 DJ-1/PfpI family TVD_11235 PF13180 PDZ domain TVD_11235 PF03572 Peptidase family S41 TVD_11240 PF01551 Peptidase family M23 TVD_11250 PF00581 Rhodanese-like domain TVD_11255 PF00462 Glutaredoxin TVD_11260 PF02556 Preprotein translocase subunit SecB TVD_11265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TVD_11265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TVD_11280 PF02028 BCCT, betaine/carnitine/choline family transporter TVD_11285 PF10005 zinc-ribbon domain TVD_11285 PF15887 Putative zinc-binding metallo-peptidase TVD_11300 PF02861 Clp amino terminal domain, pathogenicity island component TVD_11300 PF17871 AAA lid domain TVD_11300 PF10431 C-terminal, D2-small domain, of ClpB protein TVD_11300 PF07724 AAA domain (Cdc48 subfamily) TVD_11300 PF00004 ATPase family associated with various cellular activities (AAA) TVD_11310 PF00849 RNA pseudouridylate synthase TVD_11315 PF13525 Outer membrane lipoprotein TVD_11320 PF00543 Nitrogen regulatory protein P-II TVD_11325 PF02540 NAD synthase TVD_11325 PF00795 Carbon-nitrogen hydrolase TVD_11330 PF02629 CoA binding domain TVD_11330 PF00549 CoA-ligase TVD_11335 PF00549 CoA-ligase TVD_11335 PF08442 ATP-grasp domain TVD_11340 PF02261 Aspartate decarboxylase TVD_11345 PF02569 Pantoate-beta-alanine ligase TVD_11350 PF02548 Ketopantoate hydroxymethyltransferase TVD_11355 PF01712 Deoxynucleoside kinase TVD_11360 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TVD_11365 PF01743 Poly A polymerase head domain TVD_11365 PF12626 Polymerase A arginine-rich C-terminus TVD_11365 PF12627 Probable RNA and SrmB- binding site of polymerase A TVD_11370 PF13344 Haloacid dehalogenase-like hydrolase TVD_11370 PF00293 NUDIX domain TVD_11375 PF01479 S4 domain TVD_11385 PF01475 Ferric uptake regulator family TVD_11395 PF03658 RnfH family Ubiquitin TVD_11400 PF03364 Polyketide cyclase / dehydrase and lipid transport TVD_11405 PF00209 Sodium:neurotransmitter symporter family TVD_11410 PF01668 SmpB protein TVD_11415 PF00929 Exonuclease TVD_11420 PF00075 RNase H TVD_11430 PF01476 LysM domain TVD_11430 PF01464 Transglycosylase SLT domain TVD_11435 PF01926 50S ribosome-binding GTPase TVD_11435 PF13167 GTP-binding GTPase N-terminal TVD_11435 PF16360 GTP-binding GTPase Middle Region TVD_11440 PF17209 Hfq protein TVD_11450 PF01119 DNA mismatch repair protein, C-terminal domain TVD_11450 PF08676 MutL C terminal dimerisation domain TVD_11455 PF11741 AMIN domain TVD_11455 PF01520 N-acetylmuramoyl-L-alanine amidase TVD_11460 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TVD_11465 PF01256 Carbohydrate kinase TVD_11465 PF03853 YjeF-related protein N-terminus TVD_11470 PF08331 Domain of unknown function (DUF1730) TVD_11475 PF00563 EAL domain TVD_11475 PF08448 PAS fold TVD_11475 PF00990 Diguanylate cyclase, GGDEF domain TVD_11480 PF00175 Oxidoreductase NAD-binding domain TVD_11480 PF00970 Oxidoreductase FAD-binding domain TVD_11485 PF00684 DnaJ central domain TVD_11485 PF01556 DnaJ C terminal domain TVD_11485 PF00226 DnaJ domain TVD_11495 PF01370 NAD dependent epimerase/dehydratase family TVD_11500 PF08264 Anticodon-binding domain of tRNA TVD_11500 PF00133 tRNA synthetases class I (I, L, M and V) TVD_11500 PF10458 Valyl tRNA synthetase tRNA binding arm TVD_11515 PF04820 Tryptophan halogenase TVD_11520 PF00550 Phosphopantetheine attachment site TVD_11535 PF07977 FabA-like domain TVD_11555 PF00109 Beta-ketoacyl synthase, N-terminal domain TVD_11555 PF02801 Beta-ketoacyl synthase, C-terminal domain TVD_11575 PF00535 Glycosyl transferase family 2 TVD_11600 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family TVD_11605 PF00152 tRNA synthetases class II (D, K and N) TVD_11610 PF08207 Elongation factor P (EF-P) KOW-like domain TVD_11610 PF09285 Elongation factor P, C-terminal TVD_11610 PF01132 Elongation factor P (EF-P) OB domain TVD_11615 PF04055 Radical SAM superfamily TVD_11625 PF05231 MASE1 TVD_11625 PF00563 EAL domain TVD_11630 PF01556 DnaJ C terminal domain TVD_11630 PF00226 DnaJ domain TVD_11630 PF00684 DnaJ central domain TVD_11635 PF00012 Hsp70 protein TVD_11640 PF01025 GrpE TVD_11645 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TVD_11645 PF01628 HrcA protein C terminal domain TVD_11650 PF01513 ATP-NAD kinase TVD_11655 PF02463 RecF/RecN/SMC N terminal domain TVD_11665 PF03692 Putative zinc- or iron-chelating domain TVD_11710 PF02472 Biopolymer transport protein ExbD/TolR TVD_11715 PF01618 MotA/TolQ/ExbB proton channel family TVD_11720 PF03544 Gram-negative bacterial TonB protein C-terminal TVD_11730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TVD_11735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_11735 PF00183 Hsp90 protein TVD_11740 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TVD_11765 PF01245 Ribosomal protein L19 TVD_11770 PF01746 tRNA (Guanine-1)-methyltransferase TVD_11775 PF01782 RimM N-terminal domain TVD_11775 PF05239 PRC-barrel domain TVD_11780 PF00886 Ribosomal protein S16 TVD_11785 PF02978 Signal peptide binding domain TVD_11785 PF02881 SRP54-type protein, helical bundle domain TVD_11785 PF00448 SRP54-type protein, GTPase domain TVD_11790 PF01578 Cytochrome C assembly protein TVD_11795 PF01595 Cyclin M transmembrane N-terminal domain TVD_11795 PF00571 CBS domain TVD_11795 PF03471 Transporter associated domain TVD_11800 PF18073 Rubredoxin metal binding domain TVD_11825 PF02915 Rubrerythrin TVD_11830 PF02609 Exonuclease VII small subunit TVD_11835 PF00348 Polyprenyl synthetase TVD_11840 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TVD_11840 PF02779 Transketolase, pyrimidine binding domain TVD_11840 PF02780 Transketolase, C-terminal domain TVD_11850 PF13638 PIN domain TVD_11850 PF02562 PhoH-like protein TVD_11855 PF00578 AhpC/TSA family TVD_11860 PF01842 ACT domain TVD_11865 PF00701 Dihydrodipicolinate synthetase family TVD_11870 PF06804 NlpB/DapX lipoprotein TVD_11875 PF12706 Beta-lactamase superfamily domain TVD_11910 PF00579 tRNA synthetases class I (W and Y) TVD_11915 PF03702 Anhydro-N-acetylmuramic acid kinase TVD_11920 PF01521 Iron-sulphur cluster biosynthesis TVD_11935 PF02774 Semialdehyde dehydrogenase, dimerisation domain TVD_11935 PF01118 Semialdehyde dehydrogenase, NAD binding domain TVD_11950 PF05524 PEP-utilising enzyme, N-terminal TVD_11950 PF01590 GAF domain TVD_11950 PF02896 PEP-utilising enzyme, TIM barrel domain TVD_11950 PF00391 PEP-utilising enzyme, mobile domain TVD_11955 PF00293 NUDIX domain TVD_11970 PF08543 Phosphomethylpyrimidine kinase TVD_11975 PF02581 Thiamine monophosphate synthase TVD_11980 PF00202 Aminotransferase class-III TVD_11985 PF01925 Sulfite exporter TauE/SafE TVD_11995 PF00085 Thioredoxin TVD_12005 PF02441 Flavoprotein TVD_12010 PF08245 Mur ligase middle domain TVD_12010 PF02875 Mur ligase family, glutamate ligase domain TVD_12010 PF01225 Mur ligase family, catalytic domain TVD_12020 PF04333 MlaA lipoprotein TVD_12025 PF00990 Diguanylate cyclase, GGDEF domain TVD_12030 PF00764 Arginosuccinate synthase TVD_12040 PF07992 Pyridine nucleotide-disulphide oxidoreductase TVD_12040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TVD_12045 PF00364 Biotin-requiring enzyme TVD_12045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TVD_12045 PF02817 e3 binding domain TVD_12050 PF17831 Pyruvate dehydrogenase E1 component middle domain TVD_12050 PF00456 Transketolase, thiamine diphosphate binding domain TVD_12055 PF00929 Exonuclease TVD_12060 PF00462 Glutaredoxin TVD_12065 PF06071 Protein of unknown function (DUF933) TVD_12065 PF01926 50S ribosome-binding GTPase TVD_12070 PF01195 Peptidyl-tRNA hydrolase TVD_12075 PF01386 Ribosomal L25p family TVD_12075 PF14693 Ribosomal protein TL5, C-terminal domain TVD_12080 PF14572 Phosphoribosyl synthetase-associated domain TVD_12080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TVD_12090 PF00288 GHMP kinases N terminal domain TVD_12090 PF08544 GHMP kinases C terminal TVD_12095 PF03550 Outer membrane lipoprotein LolB TVD_12105 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TVD_12105 PF01488 Shikimate / quinate 5-dehydrogenase TVD_12105 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TVD_12110 PF03462 PCRF domain TVD_12110 PF00472 RF-1 domain TVD_12115 PF13847 Methyltransferase domain TVD_12115 PF17827 PrmC N-terminal domain TVD_12125 PF00899 ThiF family TVD_12135 PF01430 Hsp33 protein TVD_12140 PF02934 GatB/GatE catalytic domain TVD_12140 PF02637 GatB domain TVD_12145 PF01425 Amidase TVD_12150 PF02686 Glu-tRNAGln amidotransferase C subunit TVD_12160 PF04085 rod shape-determining protein MreC TVD_12175 PF00570 HRDC domain TVD_12175 PF01612 3'-5' exonuclease TVD_12185 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TVD_12190 PF03279 Bacterial lipid A biosynthesis acyltransferase TVD_12200 PF06258 Mitochondrial fission ELM1 TVD_12240 PF01063 Amino-transferase class IV TVD_12245 PF08335 GlnD PII-uridylyltransferase TVD_12245 PF03710 Glutamate-ammonia ligase adenylyltransferase TVD_12250 PF13416 Bacterial extracellular solute-binding protein TVD_12255 PF00528 Binding-protein-dependent transport system inner membrane component TVD_12260 PF08402 TOBE domain TVD_12260 PF00005 ABC transporter TVD_12265 PF17243 POTRA domain TamA domain 1 TVD_12265 PF01103 Surface antigen TVD_12265 PF07244 Surface antigen variable number repeat TVD_12280 PF00691 OmpA family TVD_12280 PF01389 OmpA-like transmembrane domain TVD_12285 PF00118 TCP-1/cpn60 chaperonin family TVD_12290 PF00166 Chaperonin 10 Kd subunit TVD_12315 PF03091 CutA1 divalent ion tolerance protein TVD_12320 PF11412 Disulphide bond corrector protein DsbC TVD_12320 PF02683 Cytochrome C biogenesis protein transmembrane region TVD_12325 PF00578 AhpC/TSA family TVD_12330 PF01040 UbiA prenyltransferase family TVD_12335 PF00156 Phosphoribosyl transferase domain TVD_12345 PF06968 Biotin and Thiamin Synthesis associated domain TVD_12345 PF04055 Radical SAM superfamily TVD_12355 PF00155 Aminotransferase class I and II TVD_12360 PF04002 RadC-like JAB domain TVD_12365 PF00920 Dehydratase family TVD_12380 PF00583 Acetyltransferase (GNAT) family TVD_12380 PF00696 Amino acid kinase family TVD_12385 PF01258 Prokaryotic dksA/traR C4-type zinc finger TVD_12390 PF00149 Calcineurin-like phosphoesterase TVD_12395 PF01636 Phosphotransferase enzyme family TVD_12400 PF00483 Nucleotidyl transferase TVD_12415 PF04542 Sigma-70 region 2 TVD_12415 PF08281 Sigma-70, region 4 TVD_12440 PF01427 D-ala-D-ala dipeptidase TVD_12465 PF03232 Ubiquinone biosynthesis protein COQ7 TVD_12470 PF02675 S-adenosylmethionine decarboxylase TVD_12475 PF02566 OsmC-like protein TVD_12480 PF00027 Cyclic nucleotide-binding domain TVD_12480 PF13545 Crp-like helix-turn-helix domain TVD_12485 PF00218 Indole-3-glycerol phosphate synthase TVD_12490 PF00591 Glycosyl transferase family, a/b domain TVD_12490 PF02885 Glycosyl transferase family, helical bundle domain TVD_12495 PF07690 Major Facilitator Superfamily TVD_12500 PF00117 Glutamine amidotransferase class-I TVD_12510 PF04715 Anthranilate synthase component I, N terminal region TVD_12510 PF00425 chorismate binding enzyme TVD_12515 PF13419 Haloacid dehalogenase-like hydrolase TVD_12520 PF00834 Ribulose-phosphate 3 epimerase family TVD_12525 PF00034 Cytochrome c TVD_12535 PF05175 Methyltransferase small domain TVD_12540 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TVD_12540 PF02222 ATP-grasp domain TVD_12545 PF00731 AIR carboxylase TVD_12550 PF01259 SAICAR synthetase TVD_12565 PF01116 Fructose-bisphosphate aldolase class-II TVD_12570 PF00224 Pyruvate kinase, barrel domain TVD_12570 PF02887 Pyruvate kinase, alpha/beta domain TVD_12575 PF00162 Phosphoglycerate kinase TVD_12580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TVD_12580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TVD_12585 PF02779 Transketolase, pyrimidine binding domain TVD_12585 PF02780 Transketolase, C-terminal domain TVD_12585 PF00456 Transketolase, thiamine diphosphate binding domain TVD_12590 PF02773 S-adenosylmethionine synthetase, C-terminal domain TVD_12590 PF02772 S-adenosylmethionine synthetase, central domain TVD_12590 PF00438 S-adenosylmethionine synthetase, N-terminal domain TVD_12595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TVD_12595 PF05221 S-adenosyl-L-homocysteine hydrolase TVD_12600 PF02219 Methylenetetrahydrofolate reductase TVD_12605 PF04452 RNA methyltransferase TVD_12615 PF07194 P2 response regulator binding domain TVD_12615 PF01627 Hpt domain TVD_12615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_12615 PF02895 Signal transducing histidine kinase, homodimeric domain TVD_12615 PF01584 CheW-like domain TVD_12620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_12620 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TVD_12625 PF01584 CheW-like domain TVD_12630 PF00072 Response regulator receiver domain TVD_12635 PF00072 Response regulator receiver domain TVD_12640 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TVD_12640 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TVD_12645 PF02424 ApbE family TVD_12665 PF02622 Uncharacterized ACR, COG1678 TVD_12670 PF03652 Holliday junction resolvase TVD_12675 PF00156 Phosphoribosyl transferase domain TVD_12680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVD_12680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVD_12685 PF01979 Amidohydrolase family TVD_12690 PF00175 Oxidoreductase NAD-binding domain TVD_12690 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TVD_12690 PF00970 Oxidoreductase FAD-binding domain TVD_12695 PF00437 Type II/IV secretion system protein TVD_12700 PF00437 Type II/IV secretion system protein TVD_12705 PF00437 Type II/IV secretion system protein TVD_12710 PF01168 Alanine racemase, N-terminal domain TVD_12715 PF03807 NADP oxidoreductase coenzyme F420-dependent TVD_12715 PF14748 Pyrroline-5-carboxylate reductase dimerisation TVD_12730 PF14718 Soluble lytic murein transglycosylase L domain TVD_12730 PF01464 Transglycosylase SLT domain TVD_12735 PF00849 RNA pseudouridylate synthase TVD_12745 PF00476 DNA polymerase family A TVD_12745 PF01367 5'-3' exonuclease, C-terminal SAM fold TVD_12745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TVD_12750 PF00056 lactate/malate dehydrogenase, NAD binding domain TVD_12750 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TVD_12755 PF03949 Malic enzyme, NAD binding domain TVD_12755 PF00390 Malic enzyme, N-terminal domain TVD_12760 PF07720 Tetratricopeptide repeat TVD_12760 PF01435 Peptidase family M48 TVD_12770 PF01197 Ribosomal protein L31 TVD_12780 PF02028 BCCT, betaine/carnitine/choline family transporter TVD_12800 PF00448 SRP54-type protein, GTPase domain TVD_12800 PF02881 SRP54-type protein, helical bundle domain TVD_12805 PF00005 ABC transporter TVD_12810 PF18075 FtsX extracellular domain TVD_12815 PF04545 Sigma-70, region 4 TVD_12815 PF04542 Sigma-70 region 2 TVD_12815 PF00140 Sigma-70 factor, region 1.2 TVD_12820 PF03597 Cytochrome oxidase maturation protein cbb3-type TVD_12835 PF12801 4Fe-4S binding domain TVD_12835 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TVD_12835 PF13746 4Fe-4S dicluster domain TVD_12840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TVD_12840 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TVD_12855 PF00115 Cytochrome C and Quinol oxidase polypeptide I TVD_12860 PF08241 Methyltransferase domain TVD_12865 PF00561 alpha/beta hydrolase fold TVD_12870 PF02660 Glycerol-3-phosphate acyltransferase TVD_12875 PF00814 Glycoprotease family TVD_12885 PF00106 short chain dehydrogenase TVD_12890 PF04380 Membrane fusogenic activity TVD_12895 PF13335 Magnesium chelatase, subunit ChlI C-terminal TVD_12895 PF01078 Magnesium chelatase, subunit ChlI TVD_12900 PF00034 Cytochrome c TVD_12910 PF02357 Transcription termination factor nusG TVD_12915 PF04976 DMSO reductase anchor subunit (DmsC) TVD_12920 PF13247 4Fe-4S dicluster domain TVD_12920 PF12800 4Fe-4S binding domain TVD_12925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TVD_12925 PF00384 Molybdopterin oxidoreductase TVD_12925 PF01568 Molydopterin dinucleotide binding domain TVD_12930 PF06463 Molybdenum Cofactor Synthesis C TVD_12930 PF04055 Radical SAM superfamily TVD_12940 PF00916 Sulfate permease family TVD_12940 PF01740 STAS domain TVD_12950 PF00593 TonB dependent receptor TVD_12950 PF07715 TonB-dependent Receptor Plug Domain TVD_12975 PF00588 SpoU rRNA Methylase family TVD_12980 PF01180 Dihydroorotate dehydrogenase TVD_12985 PF00158 Sigma-54 interaction domain TVD_12985 PF00072 Response regulator receiver domain TVD_12985 PF02954 Bacterial regulatory protein, Fis family TVD_12990 PF00512 His Kinase A (phospho-acceptor) domain TVD_12990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_12990 PF00989 PAS fold TVD_13010 PF03641 Possible lysine decarboxylase TVD_13015 PF01612 3'-5' exonuclease TVD_13015 PF00476 DNA polymerase family A TVD_13015 PF01367 5'-3' exonuclease, C-terminal SAM fold TVD_13015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TVD_13025 PF02630 SCO1/SenC TVD_13030 PF01926 50S ribosome-binding GTPase TVD_13045 PF01578 Cytochrome C assembly protein TVD_13050 PF01323 DSBA-like thioredoxin domain TVD_13055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TVD_13055 PF00205 Thiamine pyrophosphate enzyme, central domain TVD_13055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TVD_13065 PF00990 Diguanylate cyclase, GGDEF domain TVD_13070 PF00294 pfkB family carbohydrate kinase TVD_13070 PF01467 Cytidylyltransferase-like TVD_13075 PF13533 Biotin-lipoyl like TVD_13115 PF01209 ubiE/COQ5 methyltransferase family TVD_13125 PF03109 ABC1 family TVD_13130 PF00990 Diguanylate cyclase, GGDEF domain TVD_13130 PF00072 Response regulator receiver domain TVD_13140 PF02817 e3 binding domain TVD_13140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TVD_13140 PF00364 Biotin-requiring enzyme TVD_13145 PF16078 2-oxoglutarate dehydrogenase N-terminus TVD_13145 PF00676 Dehydrogenase E1 component TVD_13145 PF16870 2-oxoglutarate dehydrogenase C-terminal TVD_13145 PF02779 Transketolase, pyrimidine binding domain TVD_13150 PF00580 UvrD/REP helicase N-terminal domain TVD_13150 PF13361 UvrD-like helicase C-terminal domain TVD_13160 PF01649 Ribosomal protein S20 TVD_13170 PF00037 4Fe-4S binding domain TVD_13175 PF01467 Cytidylyltransferase-like TVD_13210 PF00365 Phosphofructokinase TVD_13215 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TVD_13220 PF09828 Chromate resistance exported protein TVD_13235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TVD_13235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TVD_13255 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TVD_13285 PF12161 HsdM N-terminal domain TVD_13285 PF02384 N-6 DNA Methylase TVD_13290 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TVD_13290 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TVD_13310 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TVD_13315 PF00708 Acylphosphatase TVD_13315 PF17788 HypF Kae1-like domain TVD_13315 PF07503 HypF finger TVD_13315 PF01300 Telomere recombination TVD_13325 PF01924 Hydrogenase formation hypA family TVD_13330 PF02769 AIR synthase related protein, C-terminal domain TVD_13330 PF00586 AIR synthase related protein, N-terminal domain TVD_13335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TVD_13335 PF17200 Single Cache domain 2 TVD_13335 PF00672 HAMP domain TVD_13340 PF03707 Bacterial signalling protein N terminal repeat TVD_13340 PF00990 Diguanylate cyclase, GGDEF domain TVD_13340 PF00563 EAL domain TVD_13345 PF00990 Diguanylate cyclase, GGDEF domain TVD_13345 PF00072 Response regulator receiver domain TVD_13395 PF13667 ThiC-associated domain TVD_13395 PF01964 Radical SAM ThiC family TVD_13400 PF01865 Protein of unknown function DUF47 TVD_13405 PF01384 Phosphate transporter family TVD_13410 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TVD_13420 PF00206 Lyase TVD_13420 PF14698 Argininosuccinate lyase C-terminal TVD_13425 PF07694 5TMR of 5TMR-LYT TVD_13425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_13425 PF06580 Histidine kinase TVD_13430 PF04397 LytTr DNA-binding domain TVD_13430 PF00072 Response regulator receiver domain TVD_13435 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TVD_13435 PF03900 Porphobilinogen deaminase, C-terminal domain TVD_13440 PF02602 Uroporphyrinogen-III synthase HemD TVD_13445 PF00175 Oxidoreductase NAD-binding domain TVD_13445 PF00970 Oxidoreductase FAD-binding domain TVD_13445 PF00111 2Fe-2S iron-sulfur cluster binding domain TVD_13460 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TVD_13465 PF03372 Endonuclease/Exonuclease/phosphatase family TVD_13470 PF01432 Peptidase family M3 TVD_13480 PF01751 Toprim domain TVD_13480 PF00204 DNA gyrase B TVD_13480 PF18053 DNA gyrase B subunit insert domain TVD_13480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TVD_13480 PF00986 DNA gyrase B subunit, carboxyl terminus TVD_13485 PF02463 RecF/RecN/SMC N terminal domain TVD_13490 PF02767 DNA polymerase III beta subunit, central domain TVD_13490 PF00712 DNA polymerase III beta subunit, N-terminal domain TVD_13490 PF02768 DNA polymerase III beta subunit, C-terminal domain TVD_13495 PF11638 DnaA N-terminal domain TVD_13495 PF08299 Bacterial dnaA protein helix-turn-helix TVD_13495 PF00308 Bacterial dnaA protein TVD_13500 PF00468 Ribosomal protein L34 TVD_13505 PF00825 Ribonuclease P TVD_13510 PF01809 Putative membrane protein insertion efficiency factor TVD_13515 PF14849 YidC periplasmic domain TVD_13515 PF02096 60Kd inner membrane protein TVD_13520 PF01926 50S ribosome-binding GTPase TVD_13520 PF12631 MnmE helical domain TVD_13520 PF10396 GTP-binding protein TrmE N-terminus TVD_13530 PF01134 Glucose inhibited division protein A TVD_13530 PF13932 GidA associated domain TVD_13535 PF02527 rRNA small subunit methyltransferase G TVD_13540 PF13614 AAA domain TVD_13545 PF17762 HTH domain found in ParB protein TVD_13545 PF02195 ParB-like nuclease domain TVD_13555 PF00119 ATP synthase A chain TVD_13560 PF00137 ATP synthase subunit C TVD_13565 PF00430 ATP synthase B/B' CF(0) TVD_13570 PF00213 ATP synthase delta (OSCP) subunit TVD_13575 PF00306 ATP synthase alpha/beta chain, C terminal domain TVD_13575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVD_13575 PF02874 ATP synthase alpha/beta family, beta-barrel domain TVD_13580 PF00231 ATP synthase TVD_13585 PF02874 ATP synthase alpha/beta family, beta-barrel domain TVD_13585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TVD_13590 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TVD_13590 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TVD_13595 PF12804 MobA-like NTP transferase domain TVD_13595 PF00132 Bacterial transferase hexapeptide (six repeats) TVD_13600 PF01380 SIS domain TVD_13610 PF02580 D-Tyr-tRNA(Tyr) deacylase TVD_13615 PF00561 alpha/beta hydrolase fold TVD_13625 PF01171 PP-loop family TVD_13635 PF07724 AAA domain (Cdc48 subfamily) TVD_13635 PF10431 C-terminal, D2-small domain, of ClpB protein TVD_13635 PF00004 ATPase family associated with various cellular activities (AAA) TVD_13640 PF00227 Proteasome subunit TVD_13645 PF00589 Phage integrase family TVD_13645 PF02899 Phage integrase, N-terminal SAM-like domain TVD_13655 PF01678 Diaminopimelate epimerase TVD_13660 PF13649 Methyltransferase domain TVD_13665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TVD_13665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TVD_13685 PF00475 Imidazoleglycerol-phosphate dehydratase TVD_13690 PF00117 Glutamine amidotransferase class-I TVD_13695 PF00977 Histidine biosynthesis protein TVD_13700 PF00977 Histidine biosynthesis protein TVD_13705 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TVD_13715 PF02416 mttA/Hcf106 family TVD_13720 PF00902 Sec-independent protein translocase protein (TatC) TVD_13725 PF01676 Metalloenzyme superfamily TVD_13725 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TVD_13735 PF00156 Phosphoribosyl transferase domain TVD_13745 PF07690 Major Facilitator Superfamily TVD_13755 PF01047 MarR family TVD_13765 PF07687 Peptidase dimerisation domain TVD_13765 PF01546 Peptidase family M20/M25/M40 TVD_13770 PF00857 Isochorismatase family TVD_13775 PF00474 Sodium:solute symporter family TVD_13780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TVD_13780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TVD_13785 PF00733 Asparagine synthase TVD_13785 PF13537 Glutamine amidotransferase domain TVD_13790 PF03951 Glutamine synthetase, beta-Grasp domain TVD_13790 PF00120 Glutamine synthetase, catalytic domain TVD_13795 PF16916 Dimerisation domain of Zinc Transporter TVD_13795 PF01545 Cation efflux family TVD_13800 PF02091 Glycyl-tRNA synthetase alpha subunit