locus-tag class description Tbd_0001 PF00308 Bacterial dnaA protein Tbd_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tbd_0001 PF11638 DnaA N-terminal domain Tbd_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tbd_0002 PF02767 DNA polymerase III beta subunit, central domain Tbd_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tbd_0003 PF01751 Toprim domain Tbd_0003 PF00204 DNA gyrase B Tbd_0003 PF18053 DNA gyrase B subunit insert domain Tbd_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Tbd_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0006 PF16242 Pyridoxamine 5'-phosphate oxidase like Tbd_0007 PF00216 Bacterial DNA-binding protein Tbd_0010 PF13368 Topoisomerase C-terminal repeat Tbd_0010 PF01751 Toprim domain Tbd_0010 PF01131 DNA topoisomerase Tbd_0011 PF04361 Protein of unknown function (DUF494) Tbd_0012 PF17782 DprA winged helix domain Tbd_0012 PF02481 DNA recombination-mediator protein A Tbd_0014 PF01327 Polypeptide deformylase Tbd_0015 PF02911 Formyl transferase, C-terminal domain Tbd_0015 PF00551 Formyl transferase Tbd_0016 PF01029 NusB family Tbd_0016 PF01189 16S rRNA methyltransferase RsmB/F Tbd_0018 PF00672 HAMP domain Tbd_0018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0018 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0018 PF00989 PAS fold Tbd_0019 PF00072 Response regulator receiver domain Tbd_0019 PF02954 Bacterial regulatory protein, Fis family Tbd_0019 PF00158 Sigma-54 interaction domain Tbd_0020 PF02254 TrkA-N domain Tbd_0020 PF02080 TrkA-C domain Tbd_0021 PF02386 Cation transport protein Tbd_0022 PF02386 Cation transport protein Tbd_0024 PF04362 Bacterial Fe(2+) trafficking Tbd_0025 PF01895 PhoU domain Tbd_0027 PF00293 NUDIX domain Tbd_0029 PF01960 ArgJ family Tbd_0033 PF00580 UvrD/REP helicase N-terminal domain Tbd_0033 PF12705 PD-(D/E)XK nuclease superfamily Tbd_0033 PF13361 UvrD-like helicase C-terminal domain Tbd_0035 PF00037 4Fe-4S binding domain Tbd_0035 PF11953 Domain of unknown function (DUF3470) Tbd_0036 PF00085 Thioredoxin Tbd_0037 PF07497 Rho termination factor, RNA-binding domain Tbd_0037 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_0037 PF07498 Rho termination factor, N-terminal domain Tbd_0038 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_0038 PF07498 Rho termination factor, N-terminal domain Tbd_0038 PF07497 Rho termination factor, RNA-binding domain Tbd_0039 PF01197 Ribosomal protein L31 Tbd_0040 PF01435 Peptidase family M48 Tbd_0042 PF12804 MobA-like NTP transferase domain Tbd_0044 PF02754 Cysteine-rich domain Tbd_0044 PF13183 4Fe-4S dicluster domain Tbd_0045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Tbd_0046 PF01565 FAD binding domain Tbd_0047 PF01565 FAD binding domain Tbd_0047 PF02913 FAD linked oxidases, C-terminal domain Tbd_0050 PF01614 Bacterial transcriptional regulator Tbd_0050 PF09339 IclR helix-turn-helix domain Tbd_0057 PF01734 Patatin-like phospholipase Tbd_0058 PF03477 ATP cone domain Tbd_0058 PF02867 Ribonucleotide reductase, barrel domain Tbd_0058 PF00317 Ribonucleotide reductase, all-alpha domain Tbd_0059 PF01636 Phosphotransferase enzyme family Tbd_0060 PF00733 Asparagine synthase Tbd_0060 PF13537 Glutamine amidotransferase domain Tbd_0061 PF13406 Transglycosylase SLT domain Tbd_0068 PF00753 Metallo-beta-lactamase superfamily Tbd_0069 PF00491 Arginase family Tbd_0071 PF04055 Radical SAM superfamily Tbd_0071 PF06463 Molybdenum Cofactor Synthesis C Tbd_0072 PF17805 AsnC-like ligand binding domain Tbd_0073 PF17805 AsnC-like ligand binding domain Tbd_0076 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0077 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0078 PF04205 FMN-binding domain Tbd_0078 PF12801 4Fe-4S binding domain Tbd_0081 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Tbd_0081 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tbd_0083 PF00768 D-alanyl-D-alanine carboxypeptidase Tbd_0084 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0085 PF00563 EAL domain Tbd_0085 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0085 PF03707 Bacterial signalling protein N terminal repeat Tbd_0088 PF00474 Sodium:solute symporter family Tbd_0089 PF00929 Exonuclease Tbd_0089 PF02811 PHP domain Tbd_0089 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tbd_0089 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tbd_0089 PF14579 Helix-hairpin-helix motif Tbd_0091 PF00118 TCP-1/cpn60 chaperonin family Tbd_0092 PF00166 Chaperonin 10 Kd subunit Tbd_0093 PF00202 Aminotransferase class-III Tbd_0095 PF10996 Beta-Casp domain Tbd_0095 PF00753 Metallo-beta-lactamase superfamily Tbd_0095 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tbd_0096 PF02253 Phospholipase A1 Tbd_0097 PF13180 PDZ domain Tbd_0098 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Tbd_0098 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tbd_0098 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Tbd_0099 PF01370 NAD dependent epimerase/dehydratase family Tbd_0101 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Tbd_0102 PF05433 Glycine zipper 2TM domain Tbd_0103 PF00156 Phosphoribosyl transferase domain Tbd_0104 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tbd_0105 PF01467 Cytidylyltransferase-like Tbd_0106 PF04972 BON domain Tbd_0107 PF13580 SIS domain Tbd_0108 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tbd_0109 PF01979 Amidohydrolase family Tbd_0110 PF02381 MraZ protein, putative antitoxin-like Tbd_0111 PF01795 MraW methylase family Tbd_0112 PF04999 Cell division protein FtsL Tbd_0113 PF00905 Penicillin binding protein transpeptidase domain Tbd_0113 PF03717 Penicillin-binding Protein dimerisation domain Tbd_0114 PF01225 Mur ligase family, catalytic domain Tbd_0114 PF08245 Mur ligase middle domain Tbd_0114 PF02875 Mur ligase family, glutamate ligase domain Tbd_0115 PF02875 Mur ligase family, glutamate ligase domain Tbd_0115 PF08245 Mur ligase middle domain Tbd_0115 PF01225 Mur ligase family, catalytic domain Tbd_0116 PF00953 Glycosyl transferase family 4 Tbd_0116 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Tbd_0117 PF08245 Mur ligase middle domain Tbd_0117 PF02875 Mur ligase family, glutamate ligase domain Tbd_0118 PF01098 Cell cycle protein Tbd_0119 PF04101 Glycosyltransferase family 28 C-terminal domain Tbd_0119 PF03033 Glycosyltransferase family 28 N-terminal domain Tbd_0120 PF01225 Mur ligase family, catalytic domain Tbd_0120 PF02875 Mur ligase family, glutamate ligase domain Tbd_0120 PF08245 Mur ligase middle domain Tbd_0121 PF01565 FAD binding domain Tbd_0121 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tbd_0122 PF01820 D-ala D-ala ligase N-terminus Tbd_0122 PF07478 D-ala D-ala ligase C-terminus Tbd_0123 PF03799 Cell division protein FtsQ Tbd_0123 PF08478 POTRA domain, FtsQ-type Tbd_0124 PF02491 SHS2 domain inserted in FTSA Tbd_0125 PF12327 FtsZ family, C-terminal domain Tbd_0125 PF00091 Tubulin/FtsZ family, GTPase domain Tbd_0126 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Tbd_0127 PF00691 OmpA family Tbd_0127 PF05736 OprF membrane domain Tbd_0128 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0129 PF00034 Cytochrome c Tbd_0131 PF01043 SecA preprotein cross-linking domain Tbd_0131 PF07517 SecA DEAD-like domain Tbd_0131 PF02810 SEC-C motif Tbd_0131 PF07516 SecA Wing and Scaffold domain Tbd_0135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0135 PF08521 Two-component sensor kinase N-terminal Tbd_0135 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0136 PF00486 Transcriptional regulatory protein, C terminal Tbd_0136 PF00072 Response regulator receiver domain Tbd_0140 PF00884 Sulfatase Tbd_0143 PF00873 AcrB/AcrD/AcrF family Tbd_0146 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0151 PF12848 ABC transporter Tbd_0151 PF00005 ABC transporter Tbd_0152 PF00563 EAL domain Tbd_0152 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0152 PF08448 PAS fold Tbd_0154 PF00696 Amino acid kinase family Tbd_0154 PF00583 Acetyltransferase (GNAT) family Tbd_0155 PF04452 RNA methyltransferase Tbd_0158 PF00459 Inositol monophosphatase family Tbd_0159 PF02780 Transketolase, C-terminal domain Tbd_0159 PF00456 Transketolase, thiamine diphosphate binding domain Tbd_0159 PF02779 Transketolase, pyrimidine binding domain Tbd_0160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tbd_0160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tbd_0161 PF00162 Phosphoglycerate kinase Tbd_0162 PF00224 Pyruvate kinase, barrel domain Tbd_0162 PF02887 Pyruvate kinase, alpha/beta domain Tbd_0163 PF01116 Fructose-bisphosphate aldolase class-II Tbd_0166 PF00580 UvrD/REP helicase N-terminal domain Tbd_0166 PF13361 UvrD-like helicase C-terminal domain Tbd_0168 PF00149 Calcineurin-like phosphoesterase Tbd_0171 PF00294 pfkB family carbohydrate kinase Tbd_0172 PF01219 Prokaryotic diacylglycerol kinase Tbd_0173 PF02347 Glycine cleavage system P-protein Tbd_0174 PF08534 Redoxin Tbd_0176 PF02347 Glycine cleavage system P-protein Tbd_0177 PF01597 Glycine cleavage H-protein Tbd_0178 PF01571 Aminomethyltransferase folate-binding domain Tbd_0178 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tbd_0181 PF02785 Biotin carboxylase C-terminal domain Tbd_0181 PF00289 Biotin carboxylase, N-terminal domain Tbd_0181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tbd_0182 PF00364 Biotin-requiring enzyme Tbd_0183 PF01220 Dehydroquinase class II Tbd_0184 PF08534 Redoxin Tbd_0185 PF01578 Cytochrome C assembly protein Tbd_0186 PF05140 ResB-like family Tbd_0187 PF00034 Cytochrome c Tbd_0188 PF01926 50S ribosome-binding GTPase Tbd_0189 PF00490 Delta-aminolevulinic acid dehydratase Tbd_0191 PF14461 Prokaryotic E2 family B Tbd_0191 PF00899 ThiF family Tbd_0197 PF00158 Sigma-54 interaction domain Tbd_0197 PF02954 Bacterial regulatory protein, Fis family Tbd_0197 PF00072 Response regulator receiver domain Tbd_0198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0198 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tbd_0198 PF00072 Response regulator receiver domain Tbd_0198 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0199 PF02397 Bacterial sugar transferase Tbd_0201 PF00905 Penicillin binding protein transpeptidase domain Tbd_0201 PF17092 Penicillin-binding protein OB-like domain Tbd_0201 PF00912 Transglycosylase Tbd_0206 PF07660 Secretin and TonB N terminus short domain Tbd_0206 PF03958 Bacterial type II/III secretion system short domain Tbd_0206 PF00263 Bacterial type II and III secretion system protein Tbd_0206 PF11741 AMIN domain Tbd_0207 PF01202 Shikimate kinase Tbd_0210 PF01747 ATP-sulfurylase Tbd_0210 PF14306 PUA-like domain Tbd_0213 PF03109 ABC1 family Tbd_0215 PF01209 ubiE/COQ5 methyltransferase family Tbd_0216 PF00072 Response regulator receiver domain Tbd_0216 PF00486 Transcriptional regulatory protein, C terminal Tbd_0217 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0217 PF00989 PAS fold Tbd_0217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0217 PF11808 Phosphate regulon sensor protein PhoR Tbd_0219 PF01565 FAD binding domain Tbd_0219 PF02913 FAD linked oxidases, C-terminal domain Tbd_0220 PF05661 Protein of unknown function (DUF808) Tbd_0221 PF02445 Quinolinate synthetase A protein Tbd_0222 PF00308 Bacterial dnaA protein Tbd_0222 PF08299 Bacterial dnaA protein helix-turn-helix Tbd_0222 PF11638 DnaA N-terminal domain Tbd_0223 PF00085 Thioredoxin Tbd_0226 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tbd_0226 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tbd_0227 PF01491 Frataxin-like domain Tbd_0229 PF00206 Lyase Tbd_0229 PF14698 Argininosuccinate lyase C-terminal Tbd_0230 PF06580 Histidine kinase Tbd_0230 PF07694 5TMR of 5TMR-LYT Tbd_0230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0231 PF04397 LytTr DNA-binding domain Tbd_0231 PF00072 Response regulator receiver domain Tbd_0232 PF00293 NUDIX domain Tbd_0234 PF02574 Homocysteine S-methyltransferase Tbd_0234 PF02607 B12 binding domain Tbd_0234 PF02310 B12 binding domain Tbd_0234 PF00809 Pterin binding enzyme Tbd_0234 PF02965 Vitamin B12 dependent methionine synthase, activation domain Tbd_0237 PF13335 Magnesium chelatase, subunit ChlI C-terminal Tbd_0237 PF01078 Magnesium chelatase, subunit ChlI Tbd_0238 PF04380 Membrane fusogenic activity Tbd_0240 PF00543 Nitrogen regulatory protein P-II Tbd_0241 PF00909 Ammonium Transporter Family Tbd_0242 PF01227 GTP cyclohydrolase I Tbd_0244 PF00691 OmpA family Tbd_0246 PF04204 Homoserine O-succinyltransferase Tbd_0247 PF02405 Permease MlaE Tbd_0248 PF00005 ABC transporter Tbd_0253 PF07690 Major Facilitator Superfamily Tbd_0254 PF03372 Endonuclease/Exonuclease/phosphatase family Tbd_0255 PF00156 Phosphoribosyl transferase domain Tbd_0257 PF02934 GatB/GatE catalytic domain Tbd_0257 PF02637 GatB domain Tbd_0258 PF01425 Amidase Tbd_0259 PF02686 Glu-tRNAGln amidotransferase C subunit Tbd_0262 PF04093 rod shape-determining protein MreD Tbd_0263 PF00905 Penicillin binding protein transpeptidase domain Tbd_0263 PF03717 Penicillin-binding Protein dimerisation domain Tbd_0264 PF01098 Cell cycle protein Tbd_0265 PF03330 Lytic transglycolase Tbd_0265 PF05036 Sporulation related domain Tbd_0266 PF00768 D-alanyl-D-alanine carboxypeptidase Tbd_0266 PF07943 Penicillin-binding protein 5, C-terminal domain Tbd_0267 PF01063 Amino-transferase class IV Tbd_0268 PF04359 Protein of unknown function (DUF493) Tbd_0269 PF03099 Biotin/lipoate A/B protein ligase family Tbd_0270 PF02885 Glycosyl transferase family, helical bundle domain Tbd_0270 PF00591 Glycosyl transferase family, a/b domain Tbd_0271 PF00355 Rieske [2Fe-2S] domain Tbd_0272 PF08534 Redoxin Tbd_0274 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Tbd_0274 PF04055 Radical SAM superfamily Tbd_0276 PF01061 ABC-2 type transporter Tbd_0281 PF10531 SLBB domain Tbd_0281 PF02563 Polysaccharide biosynthesis/export protein Tbd_0283 PF13614 AAA domain Tbd_0285 PF01471 Putative peptidoglycan binding domain Tbd_0285 PF13401 AAA domain Tbd_0286 PF02350 UDP-N-acetylglucosamine 2-epimerase Tbd_0287 PF01522 Polysaccharide deacetylase Tbd_0291 PF13439 Glycosyltransferase Family 4 Tbd_0291 PF00534 Glycosyl transferases group 1 Tbd_0292 PF13537 Glutamine amidotransferase domain Tbd_0292 PF00733 Asparagine synthase Tbd_0293 PF00534 Glycosyl transferases group 1 Tbd_0294 PF00534 Glycosyl transferases group 1 Tbd_0294 PF13439 Glycosyltransferase Family 4 Tbd_0301 PF00535 Glycosyl transferase family 2 Tbd_0302 PF13439 Glycosyltransferase Family 4 Tbd_0302 PF00534 Glycosyl transferases group 1 Tbd_0305 PF00534 Glycosyl transferases group 1 Tbd_0305 PF13439 Glycosyltransferase Family 4 Tbd_0306 PF16347 Domain of unknown function (DUF4976) Tbd_0306 PF00884 Sulfatase Tbd_0309 PF00535 Glycosyl transferase family 2 Tbd_0311 PF01943 Polysaccharide biosynthesis protein Tbd_0315 PF01761 3-dehydroquinate synthase Tbd_0316 PF13286 Phosphohydrolase-associated domain Tbd_0316 PF01966 HD domain Tbd_0317 PF00156 Phosphoribosyl transferase domain Tbd_0319 PF06968 Biotin and Thiamin Synthesis associated domain Tbd_0319 PF04055 Radical SAM superfamily Tbd_0320 PF00155 Aminotransferase class I and II Tbd_0321 PF00561 alpha/beta hydrolase fold Tbd_0322 PF08241 Methyltransferase domain Tbd_0325 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Tbd_0325 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Tbd_0326 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0328 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Tbd_0330 PF00510 Cytochrome c oxidase subunit III Tbd_0334 PF02628 Cytochrome oxidase assembly protein Tbd_0335 PF01040 UbiA prenyltransferase family Tbd_0336 PF02082 Transcriptional regulator Tbd_0337 PF02630 SCO1/SenC Tbd_0338 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0341 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0341 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Tbd_0342 PF13746 4Fe-4S dicluster domain Tbd_0342 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Tbd_0342 PF12801 4Fe-4S binding domain Tbd_0345 PF04545 Sigma-70, region 4 Tbd_0345 PF00140 Sigma-70 factor, region 1.2 Tbd_0345 PF04542 Sigma-70 region 2 Tbd_0348 PF00072 Response regulator receiver domain Tbd_0348 PF00486 Transcriptional regulatory protein, C terminal Tbd_0350 PF00563 EAL domain Tbd_0350 PF01590 GAF domain Tbd_0350 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0350 PF00360 Phytochrome region Tbd_0351 PF03472 Autoinducer binding domain Tbd_0351 PF00196 Bacterial regulatory proteins, luxR family Tbd_0355 PF05860 haemagglutination activity domain Tbd_0356 PF00746 LPXTG cell wall anchor motif Tbd_0356 PF00149 Calcineurin-like phosphoesterase Tbd_0356 PF00565 Staphylococcal nuclease homologue Tbd_0356 PF02872 5'-nucleotidase, C-terminal domain Tbd_0357 PF01618 MotA/TolQ/ExbB proton channel family Tbd_0358 PF02472 Biopolymer transport protein ExbD/TolR Tbd_0368 PF02896 PEP-utilising enzyme, TIM barrel domain Tbd_0368 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tbd_0368 PF00391 PEP-utilising enzyme, mobile domain Tbd_0374 PF18075 FtsX extracellular domain Tbd_0375 PF00005 ABC transporter Tbd_0376 PF00448 SRP54-type protein, GTPase domain Tbd_0376 PF02881 SRP54-type protein, helical bundle domain Tbd_0377 PF00675 Insulinase (Peptidase family M16) Tbd_0377 PF05193 Peptidase M16 inactive domain Tbd_0378 PF05193 Peptidase M16 inactive domain Tbd_0378 PF00675 Insulinase (Peptidase family M16) Tbd_0380 PF01467 Cytidylyltransferase-like Tbd_0381 PF00037 4Fe-4S binding domain Tbd_0383 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Tbd_0383 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Tbd_0383 PF06827 Zinc finger found in FPG and IleRS Tbd_0385 PF03550 Outer membrane lipoprotein LolB Tbd_0386 PF08544 GHMP kinases C terminal Tbd_0386 PF00288 GHMP kinases N terminal domain Tbd_0387 PF14572 Phosphoribosyl synthetase-associated domain Tbd_0387 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tbd_0388 PF14693 Ribosomal protein TL5, C-terminal domain Tbd_0388 PF01386 Ribosomal L25p family Tbd_0389 PF01195 Peptidyl-tRNA hydrolase Tbd_0390 PF06071 Protein of unknown function (DUF933) Tbd_0390 PF01926 50S ribosome-binding GTPase Tbd_0391 PF03144 Elongation factor Tu domain 2 Tbd_0391 PF03143 Elongation factor Tu C-terminal domain Tbd_0391 PF00009 Elongation factor Tu GTP binding domain Tbd_0392 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Tbd_0393 PF02357 Transcription termination factor nusG Tbd_0393 PF00467 KOW motif Tbd_0394 PF03946 Ribosomal protein L11, N-terminal domain Tbd_0394 PF00298 Ribosomal protein L11, RNA binding domain Tbd_0395 PF00687 Ribosomal protein L1p/L10e family Tbd_0396 PF00466 Ribosomal protein L10 Tbd_0397 PF00542 Ribosomal protein L7/L12 C-terminal domain Tbd_0397 PF16320 Ribosomal protein L7/L12 dimerisation domain Tbd_0398 PF00562 RNA polymerase Rpb2, domain 6 Tbd_0398 PF04563 RNA polymerase beta subunit Tbd_0398 PF04560 RNA polymerase Rpb2, domain 7 Tbd_0398 PF10385 RNA polymerase beta subunit external 1 domain Tbd_0398 PF04565 RNA polymerase Rpb2, domain 3 Tbd_0398 PF04561 RNA polymerase Rpb2, domain 2 Tbd_0399 PF00623 RNA polymerase Rpb1, domain 2 Tbd_0399 PF04997 RNA polymerase Rpb1, domain 1 Tbd_0399 PF04983 RNA polymerase Rpb1, domain 3 Tbd_0399 PF05000 RNA polymerase Rpb1, domain 4 Tbd_0399 PF04998 RNA polymerase Rpb1, domain 5 Tbd_0400 PF00164 Ribosomal protein S12/S23 Tbd_0401 PF00177 Ribosomal protein S7p/S5e Tbd_0402 PF14492 Elongation Factor G, domain II Tbd_0402 PF00009 Elongation factor Tu GTP binding domain Tbd_0402 PF00679 Elongation factor G C-terminus Tbd_0402 PF03764 Elongation factor G, domain IV Tbd_0402 PF03144 Elongation factor Tu domain 2 Tbd_0403 PF03144 Elongation factor Tu domain 2 Tbd_0403 PF03143 Elongation factor Tu C-terminal domain Tbd_0403 PF00009 Elongation factor Tu GTP binding domain Tbd_0404 PF00338 Ribosomal protein S10p/S20e Tbd_0405 PF00297 Ribosomal protein L3 Tbd_0406 PF00573 Ribosomal protein L4/L1 family Tbd_0407 PF00276 Ribosomal protein L23 Tbd_0408 PF03947 Ribosomal Proteins L2, C-terminal domain Tbd_0408 PF00181 Ribosomal Proteins L2, RNA binding domain Tbd_0409 PF00203 Ribosomal protein S19 Tbd_0410 PF00237 Ribosomal protein L22p/L17e Tbd_0411 PF00189 Ribosomal protein S3, C-terminal domain Tbd_0411 PF07650 KH domain Tbd_0412 PF00252 Ribosomal protein L16p/L10e Tbd_0413 PF00831 Ribosomal L29 protein Tbd_0414 PF00366 Ribosomal protein S17 Tbd_0415 PF00238 Ribosomal protein L14p/L23e Tbd_0416 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Tbd_0416 PF00467 KOW motif Tbd_0417 PF00281 Ribosomal protein L5 Tbd_0417 PF00673 ribosomal L5P family C-terminus Tbd_0418 PF00253 Ribosomal protein S14p/S29e Tbd_0419 PF00410 Ribosomal protein S8 Tbd_0420 PF00347 Ribosomal protein L6 Tbd_0421 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Tbd_0422 PF03719 Ribosomal protein S5, C-terminal domain Tbd_0422 PF00333 Ribosomal protein S5, N-terminal domain Tbd_0423 PF00327 Ribosomal protein L30p/L7e Tbd_0424 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Tbd_0425 PF00344 SecY translocase Tbd_0426 PF01176 Translation initiation factor 1A / IF-1 Tbd_0427 PF00416 Ribosomal protein S13/S18 Tbd_0428 PF00411 Ribosomal protein S11 Tbd_0429 PF01479 S4 domain Tbd_0429 PF00163 Ribosomal protein S4/S9 N-terminal domain Tbd_0430 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tbd_0430 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tbd_0430 PF01000 RNA polymerase Rpb3/RpoA insert domain Tbd_0431 PF01196 Ribosomal protein L17 Tbd_0433 PF05161 MOFRL family Tbd_0433 PF13660 Domain of unknown function (DUF4147) Tbd_0435 PF00849 RNA pseudouridylate synthase Tbd_0435 PF01479 S4 domain Tbd_0436 PF17760 UvrA interaction domain Tbd_0436 PF17755 UvrA DNA-binding domain Tbd_0437 PF07690 Major Facilitator Superfamily Tbd_0438 PF00436 Single-strand binding protein family Tbd_0439 PF07715 TonB-dependent Receptor Plug Domain Tbd_0439 PF00593 TonB dependent receptor Tbd_0442 PF02938 GAD domain Tbd_0442 PF00152 tRNA synthetases class II (D, K and N) Tbd_0442 PF01336 OB-fold nucleic acid binding domain Tbd_0444 PF00293 NUDIX domain Tbd_0446 PF13091 PLD-like domain Tbd_0447 PF04228 Putative neutral zinc metallopeptidase Tbd_0448 PF00267 Gram-negative porin Tbd_0451 PF02566 OsmC-like protein Tbd_0453 PF00572 Ribosomal protein L13 Tbd_0454 PF00380 Ribosomal protein S9/S16 Tbd_0455 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tbd_0455 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tbd_0456 PF01521 Iron-sulphur cluster biosynthesis Tbd_0457 PF03702 Anhydro-N-acetylmuramic acid kinase Tbd_0458 PF01464 Transglycosylase SLT domain Tbd_0458 PF01551 Peptidase family M23 Tbd_0458 PF10145 Phage-related minor tail protein Tbd_0459 PF01479 S4 domain Tbd_0459 PF00579 tRNA synthetases class I (W and Y) Tbd_0460 PF08279 HTH domain Tbd_0460 PF03099 Biotin/lipoate A/B protein ligase family Tbd_0460 PF02237 Biotin protein ligase C terminal domain Tbd_0461 PF03309 Type III pantothenate kinase Tbd_0463 PF01040 UbiA prenyltransferase family Tbd_0464 PF04345 Chorismate lyase Tbd_0468 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Tbd_0469 PF00270 DEAD/DEAH box helicase Tbd_0469 PF00271 Helicase conserved C-terminal domain Tbd_0469 PF17191 RecG wedge domain Tbd_0470 PF01042 Endoribonuclease L-PSP Tbd_0471 PF02824 TGS domain Tbd_0471 PF04607 Region found in RelA / SpoT proteins Tbd_0471 PF13291 ACT domain Tbd_0472 PF01192 RNA polymerase Rpb6 Tbd_0473 PF00625 Guanylate kinase Tbd_0474 PF08340 Domain of unknown function (DUF1732) Tbd_0474 PF03755 YicC-like family, N-terminal region Tbd_0475 PF00069 Protein kinase domain Tbd_0477 PF03725 3' exoribonuclease family, domain 2 Tbd_0477 PF01138 3' exoribonuclease family, domain 1 Tbd_0478 PF01725 Ham1 family Tbd_0479 PF06969 HemN C-terminal domain Tbd_0479 PF04055 Radical SAM superfamily Tbd_0481 PF01227 GTP cyclohydrolase I Tbd_0482 PF16925 Tetracyclin repressor-like, C-terminal domain Tbd_0482 PF00440 Bacterial regulatory proteins, tetR family Tbd_0487 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0487 PF00563 EAL domain Tbd_0487 PF03707 Bacterial signalling protein N terminal repeat Tbd_0488 PF01026 TatD related DNase Tbd_0489 PF01027 Inhibitor of apoptosis-promoting Bax1 Tbd_0490 PF16200 C-terminal region of band_7 Tbd_0490 PF01145 SPFH domain / Band 7 family Tbd_0492 PF03334 Na+/H+ antiporter subunit Tbd_0493 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Tbd_0494 PF01899 Na+/H+ ion antiporter subunit Tbd_0495 PF00361 Proton-conducting membrane transporter Tbd_0496 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Tbd_0497 PF13244 Domain of unknown function (DUF4040) Tbd_0497 PF00361 Proton-conducting membrane transporter Tbd_0497 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Tbd_0497 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tbd_0498 PF00158 Sigma-54 interaction domain Tbd_0498 PF02954 Bacterial regulatory protein, Fis family Tbd_0498 PF00072 Response regulator receiver domain Tbd_0499 PF00924 Mechanosensitive ion channel Tbd_0500 PF02080 TrkA-C domain Tbd_0500 PF00999 Sodium/hydrogen exchanger family Tbd_0500 PF03471 Transporter associated domain Tbd_0501 PF01699 Sodium/calcium exchanger protein Tbd_0502 PF00690 Cation transporter/ATPase, N-terminus Tbd_0502 PF00689 Cation transporting ATPase, C-terminus Tbd_0503 PF08335 GlnD PII-uridylyltransferase Tbd_0503 PF03710 Glutamate-ammonia ligase adenylyltransferase Tbd_0504 PF13193 AMP-binding enzyme C-terminal domain Tbd_0504 PF00501 AMP-binding enzyme Tbd_0504 PF16177 Acetyl-coenzyme A synthetase N-terminus Tbd_0507 PF00082 Subtilase family Tbd_0508 PF03358 NADPH-dependent FMN reductase Tbd_0509 PF01479 S4 domain Tbd_0511 PF00795 Carbon-nitrogen hydrolase Tbd_0512 PF01523 Putative modulator of DNA gyrase Tbd_0514 PF00793 DAHP synthetase I family Tbd_0515 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Tbd_0515 PF12169 DNA polymerase III subunits gamma and tau domain III Tbd_0515 PF12170 DNA polymerase III tau subunit V interacting with alpha Tbd_0516 PF02575 YbaB/EbfC DNA-binding family Tbd_0517 PF13662 Toprim domain Tbd_0517 PF02132 RecR protein Tbd_0518 PF00206 Lyase Tbd_0518 PF08328 Adenylosuccinate lyase C-terminal Tbd_0519 PF00085 Thioredoxin Tbd_0520 PF03449 Transcription elongation factor, N-terminal Tbd_0520 PF01272 Transcription elongation factor, GreA/GreB, C-term Tbd_0522 PF00899 ThiF family Tbd_0526 PF02441 Flavoprotein Tbd_0529 PF03668 P-loop ATPase protein family Tbd_0530 PF07475 HPr Serine kinase C-terminal domain Tbd_0530 PF02603 HPr Serine kinase N terminus Tbd_0531 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tbd_0532 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tbd_0533 PF04552 Sigma-54, DNA binding domain Tbd_0533 PF00309 Sigma-54 factor, Activator interacting domain (AID) Tbd_0533 PF04963 Sigma-54 factor, core binding domain Tbd_0534 PF00005 ABC transporter Tbd_0535 PF03968 OstA-like protein Tbd_0538 PF00571 CBS domain Tbd_0538 PF01380 SIS domain Tbd_0539 PF02080 TrkA-C domain Tbd_0539 PF00999 Sodium/hydrogen exchanger family Tbd_0539 PF02254 TrkA-N domain Tbd_0546 PF00482 Type II secretion system (T2SS), protein F Tbd_0547 PF00437 Type II/IV secretion system protein Tbd_0549 PF03958 Bacterial type II/III secretion system short domain Tbd_0549 PF00263 Bacterial type II and III secretion system protein Tbd_0551 PF02954 Bacterial regulatory protein, Fis family Tbd_0551 PF00158 Sigma-54 interaction domain Tbd_0551 PF00072 Response regulator receiver domain Tbd_0553 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tbd_0553 PF02272 DHHA1 domain Tbd_0553 PF01411 tRNA synthetases class II (A) Tbd_0558 PF08406 CbbQ/NirQ/NorQ C-terminal Tbd_0558 PF07728 AAA domain (dynein-related subfamily) Tbd_0560 PF00510 Cytochrome c oxidase subunit III Tbd_0561 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0562 PF00034 Cytochrome c Tbd_0568 PF01435 Peptidase family M48 Tbd_0568 PF13181 Tetratricopeptide repeat Tbd_0569 PF01967 MoaC family Tbd_0570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Tbd_0570 PF01568 Molydopterin dinucleotide binding domain Tbd_0570 PF00384 Molybdopterin oxidoreductase Tbd_0571 PF13247 4Fe-4S dicluster domain Tbd_0571 PF12800 4Fe-4S binding domain Tbd_0572 PF04976 DMSO reductase anchor subunit (DmsC) Tbd_0573 PF00581 Rhodanese-like domain Tbd_0574 PF01206 Sulfurtransferase TusA Tbd_0575 PF13686 DsrE/DsrF/DrsH-like family Tbd_0577 PF08264 Anticodon-binding domain of tRNA Tbd_0577 PF00133 tRNA synthetases class I (I, L, M and V) Tbd_0577 PF10458 Valyl tRNA synthetase tRNA binding arm Tbd_0579 PF04364 DNA polymerase III chi subunit, HolC Tbd_0580 PF02789 Cytosol aminopeptidase family, N-terminal domain Tbd_0580 PF00883 Cytosol aminopeptidase family, catalytic domain Tbd_0583 PF04305 Protein of unknown function (DUF455) Tbd_0585 PF08007 Cupin superfamily protein Tbd_0586 PF00578 AhpC/TSA family Tbd_0587 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_0588 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Tbd_0589 PF01171 PP-loop family Tbd_0589 PF11734 TilS substrate C-terminal domain Tbd_0589 PF09179 TilS substrate binding domain Tbd_0590 PF00334 Nucleoside diphosphate kinase Tbd_0591 PF04055 Radical SAM superfamily Tbd_0593 PF13464 Domain of unknown function (DUF4115) Tbd_0594 PF04551 GcpE protein Tbd_0595 PF13393 Histidyl-tRNA synthetase Tbd_0595 PF03129 Anticodon binding domain Tbd_0597 PF13360 PQQ-like domain Tbd_0598 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tbd_0598 PF01926 50S ribosome-binding GTPase Tbd_0602 PF01926 50S ribosome-binding GTPase Tbd_0602 PF13167 GTP-binding GTPase N-terminal Tbd_0602 PF16360 GTP-binding GTPase Middle Region Tbd_0603 PF01145 SPFH domain / Band 7 family Tbd_0603 PF12221 Bacterial membrane protein N terminal Tbd_0604 PF01145 SPFH domain / Band 7 family Tbd_0606 PF13393 Histidyl-tRNA synthetase Tbd_0607 PF00709 Adenylosuccinate synthetase Tbd_0608 PF08206 Ribonuclease B OB domain Tbd_0608 PF00575 S1 RNA binding domain Tbd_0608 PF00773 RNB domain Tbd_0608 PF08461 Ribonuclease R winged-helix domain Tbd_0608 PF17876 Cold shock domain Tbd_0609 PF00588 SpoU rRNA Methylase family Tbd_0609 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tbd_0612 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Tbd_0612 PF18381 YcaO cyclodehydratase C-terminal domain Tbd_0615 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tbd_0615 PF00588 SpoU rRNA Methylase family Tbd_0616 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0616 PF03707 Bacterial signalling protein N terminal repeat Tbd_0616 PF00563 EAL domain Tbd_0617 PF03618 Kinase/pyrophosphorylase Tbd_0618 PF00391 PEP-utilising enzyme, mobile domain Tbd_0618 PF02896 PEP-utilising enzyme, TIM barrel domain Tbd_0618 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tbd_0619 PF00117 Glutamine amidotransferase class-I Tbd_0619 PF06418 CTP synthase N-terminus Tbd_0620 PF00793 DAHP synthetase I family Tbd_0621 PF00113 Enolase, C-terminal TIM barrel domain Tbd_0621 PF03952 Enolase, N-terminal domain Tbd_0622 PF04977 Septum formation initiator Tbd_0623 PF04354 ZipA, C-terminal FtsZ-binding domain Tbd_0624 PF12826 Helix-hairpin-helix motif Tbd_0624 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Tbd_0624 PF03120 NAD-dependent DNA ligase OB-fold domain Tbd_0624 PF01653 NAD-dependent DNA ligase adenylation domain Tbd_0624 PF00533 BRCA1 C Terminus (BRCT) domain Tbd_0625 PF00483 Nucleotidyl transferase Tbd_0626 PF03853 YjeF-related protein N-terminus Tbd_0626 PF01256 Carbohydrate kinase Tbd_0629 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Tbd_0629 PF02769 AIR synthase related protein, C-terminal domain Tbd_0629 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Tbd_0630 PF00311 Phosphoenolpyruvate carboxylase Tbd_0635 PF06969 HemN C-terminal domain Tbd_0635 PF04055 Radical SAM superfamily Tbd_0636 PF00072 Response regulator receiver domain Tbd_0636 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0639 PF13746 4Fe-4S dicluster domain Tbd_0639 PF12801 4Fe-4S binding domain Tbd_0639 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Tbd_0640 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Tbd_0640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0643 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0644 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Tbd_0644 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Tbd_0645 PF01180 Dihydroorotate dehydrogenase Tbd_0646 PF00375 Sodium:dicarboxylate symporter family Tbd_0647 PF07943 Penicillin-binding protein 5, C-terminal domain Tbd_0647 PF00768 D-alanyl-D-alanine carboxypeptidase Tbd_0652 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_0652 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_0654 PF02780 Transketolase, C-terminal domain Tbd_0654 PF00364 Biotin-requiring enzyme Tbd_0654 PF02779 Transketolase, pyrimidine binding domain Tbd_0655 PF00676 Dehydrogenase E1 component Tbd_0656 PF02789 Cytosol aminopeptidase family, N-terminal domain Tbd_0656 PF00883 Cytosol aminopeptidase family, catalytic domain Tbd_0658 PF00849 RNA pseudouridylate synthase Tbd_0659 PF00080 Copper/zinc superoxide dismutase (SODC) Tbd_0660 PF00672 HAMP domain Tbd_0660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_0660 PF02203 Tar ligand binding domain homologue Tbd_0662 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_0662 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tbd_0662 PF00205 Thiamine pyrophosphate enzyme, central domain Tbd_0663 PF02308 MgtC family Tbd_0665 PF00923 Transaldolase/Fructose-6-phosphate aldolase Tbd_0666 PF01264 Chorismate synthase Tbd_0668 PF01168 Alanine racemase, N-terminal domain Tbd_0669 PF00155 Aminotransferase class I and II Tbd_0670 PF00072 Response regulator receiver domain Tbd_0670 PF00196 Bacterial regulatory proteins, luxR family Tbd_0671 PF00211 Adenylate and Guanylate cyclase catalytic domain Tbd_0672 PF01381 Helix-turn-helix Tbd_0674 PF07690 Major Facilitator Superfamily Tbd_0676 PF13654 AAA domain Tbd_0676 PF05362 Lon protease (S16) C-terminal proteolytic domain Tbd_0679 PF00313 'Cold-shock' DNA-binding domain Tbd_0680 PF07152 YaeQ protein Tbd_0685 PF00005 ABC transporter Tbd_0686 PF13472 GDSL-like Lipase/Acylhydrolase family Tbd_0689 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tbd_0689 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tbd_0690 PF13419 Haloacid dehalogenase-like hydrolase Tbd_0691 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tbd_0693 PF03725 3' exoribonuclease family, domain 2 Tbd_0693 PF01138 3' exoribonuclease family, domain 1 Tbd_0693 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tbd_0693 PF00013 KH domain Tbd_0693 PF00575 S1 RNA binding domain Tbd_0694 PF00312 Ribosomal protein S15 Tbd_0695 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tbd_0695 PF16198 tRNA pseudouridylate synthase B C-terminal domain Tbd_0695 PF09157 Pseudouridine synthase II TruB, C-terminal Tbd_0696 PF02033 Ribosome-binding factor A Tbd_0697 PF08364 Bacterial translation initiation factor IF-2 associated region Tbd_0697 PF00009 Elongation factor Tu GTP binding domain Tbd_0697 PF11987 Translation-initiation factor 2 Tbd_0697 PF04760 Translation initiation factor IF-2, N-terminal region Tbd_0698 PF08529 NusA N-terminal domain Tbd_0698 PF13184 NusA-like KH domain Tbd_0699 PF17384 RimP C-terminal SH3 domain Tbd_0699 PF02576 RimP N-terminal domain Tbd_0700 PF01066 CDP-alcohol phosphatidyltransferase Tbd_0701 PF02151 UvrB/uvrC motif Tbd_0701 PF08459 UvrC Helix-hairpin-helix N-terminal Tbd_0701 PF01541 GIY-YIG catalytic domain Tbd_0702 PF01361 Tautomerase enzyme Tbd_0703 PF03167 Uracil DNA glycosylase superfamily Tbd_0704 PF00210 Ferritin-like domain Tbd_0709 PF04205 FMN-binding domain Tbd_0711 PF02472 Biopolymer transport protein ExbD/TolR Tbd_0712 PF01618 MotA/TolQ/ExbB proton channel family Tbd_0715 PF07715 TonB-dependent Receptor Plug Domain Tbd_0715 PF00593 TonB dependent receptor Tbd_0716 PF03328 HpcH/HpaI aldolase/citrate lyase family Tbd_0717 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tbd_0717 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tbd_0718 PF06276 Ferric iron reductase FhuF-like transporter Tbd_0718 PF04183 IucA / IucC family Tbd_0719 PF07690 Major Facilitator Superfamily Tbd_0721 PF00206 Lyase Tbd_0721 PF02655 ATP-grasp domain Tbd_0722 PF00593 TonB dependent receptor Tbd_0722 PF07715 TonB-dependent Receptor Plug Domain Tbd_0722 PF07660 Secretin and TonB N terminus short domain Tbd_0723 PF03239 Iron permease FTR1 family Tbd_0726 PF16916 Dimerisation domain of Zinc Transporter Tbd_0726 PF01545 Cation efflux family Tbd_0727 PF00933 Glycosyl hydrolase family 3 N terminal domain Tbd_0728 PF01648 4'-phosphopantetheinyl transferase superfamily Tbd_0730 PF02954 Bacterial regulatory protein, Fis family Tbd_0730 PF00158 Sigma-54 interaction domain Tbd_0732 PF04552 Sigma-54, DNA binding domain Tbd_0732 PF04963 Sigma-54 factor, core binding domain Tbd_0732 PF00309 Sigma-54 factor, Activator interacting domain (AID) Tbd_0739 PF00664 ABC transporter transmembrane region Tbd_0739 PF00005 ABC transporter Tbd_0740 PF13439 Glycosyltransferase Family 4 Tbd_0740 PF00534 Glycosyl transferases group 1 Tbd_0742 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Tbd_0747 PF02545 Maf-like protein Tbd_0747 PF00293 NUDIX domain Tbd_0749 PF09967 VWA-like domain (DUF2201) Tbd_0749 PF13203 Putative metallopeptidase domain Tbd_0750 PF01430 Hsp33 protein Tbd_0752 PF00437 Type II/IV secretion system protein Tbd_0752 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_0753 PF00482 Type II secretion system (T2SS), protein F Tbd_0754 PF07963 Prokaryotic N-terminal methylation motif Tbd_0754 PF00114 Pilin (bacterial filament) Tbd_0764 PF00263 Bacterial type II and III secretion system protein Tbd_0764 PF03958 Bacterial type II/III secretion system short domain Tbd_0765 PF01471 Putative peptidoglycan binding domain Tbd_0765 PF13401 AAA domain Tbd_0768 PF00155 Aminotransferase class I and II Tbd_0769 PF06167 Glucose-regulated metallo-peptidase M90 Tbd_0770 PF02646 RmuC family Tbd_0774 PF01152 Bacterial-like globin Tbd_0775 PF01370 NAD dependent epimerase/dehydratase family Tbd_0775 PF02222 ATP-grasp domain Tbd_0776 PF01510 N-acetylmuramoyl-L-alanine amidase Tbd_0778 PF01048 Phosphorylase superfamily Tbd_0779 PF00849 RNA pseudouridylate synthase Tbd_0779 PF01479 S4 domain Tbd_0780 PF01327 Polypeptide deformylase Tbd_0783 PF01909 Nucleotidyltransferase domain Tbd_0783 PF08335 GlnD PII-uridylyltransferase Tbd_0783 PF01966 HD domain Tbd_0784 PF00557 Metallopeptidase family M24 Tbd_0785 PF00318 Ribosomal protein S2 Tbd_0786 PF00889 Elongation factor TS Tbd_0787 PF00696 Amino acid kinase family Tbd_0788 PF01765 Ribosome recycling factor Tbd_0789 PF01255 Putative undecaprenyl diphosphate synthase Tbd_0791 PF13288 DXP reductoisomerase C-terminal domain Tbd_0791 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Tbd_0791 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tbd_0792 PF02163 Peptidase family M50 Tbd_0792 PF17820 PDZ domain Tbd_0793 PF01103 Surface antigen Tbd_0793 PF07244 Surface antigen variable number repeat Tbd_0795 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_0795 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Tbd_0796 PF07977 FabA-like domain Tbd_0797 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_0797 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Tbd_0798 PF02684 Lipid-A-disaccharide synthetase Tbd_0799 PF01351 Ribonuclease HII Tbd_0805 PF00549 CoA-ligase Tbd_0805 PF08442 ATP-grasp domain Tbd_0806 PF00549 CoA-ligase Tbd_0806 PF02629 CoA binding domain Tbd_0807 PF02540 NAD synthase Tbd_0807 PF00795 Carbon-nitrogen hydrolase Tbd_0808 PF00543 Nitrogen regulatory protein P-II Tbd_0809 PF13525 Outer membrane lipoprotein Tbd_0810 PF00849 RNA pseudouridylate synthase Tbd_0813 PF00583 Acetyltransferase (GNAT) family Tbd_0814 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Tbd_0814 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Tbd_0815 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_0815 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_0815 PF17871 AAA lid domain Tbd_0815 PF07724 AAA domain (Cdc48 subfamily) Tbd_0815 PF02861 Clp amino terminal domain, pathogenicity island component Tbd_0818 PF06532 Negative regulator of sigma F Tbd_0822 PF00034 Cytochrome c Tbd_0823 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0824 PF08406 CbbQ/NirQ/NorQ C-terminal Tbd_0824 PF07728 AAA domain (dynein-related subfamily) Tbd_0825 PF00092 von Willebrand factor type A domain Tbd_0828 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tbd_0828 PF14579 Helix-hairpin-helix motif Tbd_0828 PF02811 PHP domain Tbd_0828 PF01336 OB-fold nucleic acid binding domain Tbd_0828 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tbd_0831 PF09364 XFP N-terminal domain Tbd_0831 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Tbd_0831 PF09363 XFP C-terminal domain Tbd_0832 PF00871 Acetokinase family Tbd_0835 PF01975 Survival protein SurE Tbd_0837 PF01476 LysM domain Tbd_0837 PF01551 Peptidase family M23 Tbd_0838 PF04539 Sigma-70 region 3 Tbd_0838 PF04542 Sigma-70 region 2 Tbd_0838 PF00140 Sigma-70 factor, region 1.2 Tbd_0838 PF04545 Sigma-70, region 4 Tbd_0839 PF13419 Haloacid dehalogenase-like hydrolase Tbd_0842 PF00155 Aminotransferase class I and II Tbd_0843 PF01842 ACT domain Tbd_0843 PF03447 Homoserine dehydrogenase, NAD binding domain Tbd_0843 PF00742 Homoserine dehydrogenase Tbd_0844 PF14821 Threonine synthase N terminus Tbd_0844 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_0845 PF03167 Uracil DNA glycosylase superfamily Tbd_0846 PF00043 Glutathione S-transferase, C-terminal domain Tbd_0846 PF13417 Glutathione S-transferase, N-terminal domain Tbd_0847 PF01625 Peptide methionine sulfoxide reductase Tbd_0850 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Tbd_0850 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tbd_0852 PF00293 NUDIX domain Tbd_0853 PF00849 RNA pseudouridylate synthase Tbd_0854 PF00180 Isocitrate/isopropylmalate dehydrogenase Tbd_0855 PF00313 'Cold-shock' DNA-binding domain Tbd_0857 PF09285 Elongation factor P, C-terminal Tbd_0857 PF01132 Elongation factor P (EF-P) OB domain Tbd_0857 PF08207 Elongation factor P (EF-P) KOW-like domain Tbd_0858 PF01336 OB-fold nucleic acid binding domain Tbd_0858 PF14579 Helix-hairpin-helix motif Tbd_0858 PF02811 PHP domain Tbd_0858 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tbd_0858 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tbd_0859 PF00708 Acylphosphatase Tbd_0860 PF01588 Putative tRNA binding domain Tbd_0860 PF09334 tRNA synthetases class I (M) Tbd_0863 PF00348 Polyprenyl synthetase Tbd_0864 PF00829 Ribosomal prokaryotic L21 protein Tbd_0865 PF01016 Ribosomal L27 protein Tbd_0866 PF01926 50S ribosome-binding GTPase Tbd_0866 PF01018 GTP1/OBG Tbd_0869 PF07728 AAA domain (dynein-related subfamily) Tbd_0869 PF08406 CbbQ/NirQ/NorQ C-terminal Tbd_0872 PF00890 FAD binding domain Tbd_0873 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Tbd_0873 PF13187 4Fe-4S dicluster domain Tbd_0874 PF01747 ATP-sulfurylase Tbd_0874 PF14306 PUA-like domain Tbd_0876 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tbd_0876 PF00117 Glutamine amidotransferase class-I Tbd_0878 PF02649 Type I GTP cyclohydrolase folE2 Tbd_0879 PF02780 Transketolase, C-terminal domain Tbd_0879 PF02779 Transketolase, pyrimidine binding domain Tbd_0879 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tbd_0880 PF00348 Polyprenyl synthetase Tbd_0881 PF02609 Exonuclease VII small subunit Tbd_0887 PF00561 alpha/beta hydrolase fold Tbd_0891 PF00330 Aconitase family (aconitate hydratase) Tbd_0891 PF00694 Aconitase C-terminal domain Tbd_0893 PF00152 tRNA synthetases class II (D, K and N) Tbd_0893 PF01336 OB-fold nucleic acid binding domain Tbd_0896 PF09382 RQC domain Tbd_0896 PF16124 RecQ zinc-binding Tbd_0896 PF00271 Helicase conserved C-terminal domain Tbd_0896 PF00270 DEAD/DEAH box helicase Tbd_0896 PF00570 HRDC domain Tbd_0898 PF08241 Methyltransferase domain Tbd_0899 PF01433 Peptidase family M1 domain Tbd_0899 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Tbd_0899 PF11940 Domain of unknown function (DUF3458) Ig-like fold Tbd_0902 PF00873 AcrB/AcrD/AcrF family Tbd_0903 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0903 PF00989 PAS fold Tbd_0904 PF00072 Response regulator receiver domain Tbd_0904 PF00158 Sigma-54 interaction domain Tbd_0904 PF02954 Bacterial regulatory protein, Fis family Tbd_0906 PF00080 Copper/zinc superoxide dismutase (SODC) Tbd_0909 PF07715 TonB-dependent Receptor Plug Domain Tbd_0909 PF00593 TonB dependent receptor Tbd_0911 PF01618 MotA/TolQ/ExbB proton channel family Tbd_0912 PF02472 Biopolymer transport protein ExbD/TolR Tbd_0921 PF00472 RF-1 domain Tbd_0921 PF03462 PCRF domain Tbd_0922 PF13194 Domain of unknown function (DUF4010) Tbd_0928 PF13333 Integrase core domain Tbd_0928 PF00665 Integrase core domain Tbd_0928 PF13276 HTH-like domain Tbd_0933 PF00176 SNF2 family N-terminal domain Tbd_0933 PF00271 Helicase conserved C-terminal domain Tbd_0936 PF01555 DNA methylase Tbd_0943 PF00589 Phage integrase family Tbd_0943 PF13356 Arm DNA-binding domain Tbd_0945 PF13419 Haloacid dehalogenase-like hydrolase Tbd_0947 PF01979 Amidohydrolase family Tbd_0948 PF03989 DNA gyrase C-terminal domain, beta-propeller Tbd_0948 PF00521 DNA gyrase/topoisomerase IV, subunit A Tbd_0949 PF00266 Aminotransferase class-V Tbd_0950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tbd_0950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tbd_0950 PF01842 ACT domain Tbd_0951 PF01842 ACT domain Tbd_0951 PF01817 Chorismate mutase type II Tbd_0951 PF00800 Prephenate dehydratase Tbd_0952 PF00155 Aminotransferase class I and II Tbd_0953 PF02153 Prephenate dehydrogenase Tbd_0954 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tbd_0955 PF02224 Cytidylate kinase Tbd_0956 PF00575 S1 RNA binding domain Tbd_0957 PF00216 Bacterial DNA-binding protein Tbd_0959 PF18073 Rubredoxin metal binding domain Tbd_0960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tbd_0961 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Tbd_0961 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tbd_0961 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Tbd_0962 PF00294 pfkB family carbohydrate kinase Tbd_0963 PF01370 NAD dependent epimerase/dehydratase family Tbd_0964 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_0965 PF18073 Rubredoxin metal binding domain Tbd_0968 PF16658 Class II release factor RF3, C-terminal domain Tbd_0968 PF03144 Elongation factor Tu domain 2 Tbd_0968 PF00009 Elongation factor Tu GTP binding domain Tbd_0969 PF00696 Amino acid kinase family Tbd_0969 PF01842 ACT domain Tbd_0969 PF13840 ACT domain Tbd_0970 PF01938 TRAM domain Tbd_0970 PF05958 tRNA (Uracil-5-)-methyltransferase Tbd_0974 PF00342 Phosphoglucose isomerase Tbd_0975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_0982 PF01435 Peptidase family M48 Tbd_0983 PF00211 Adenylate and Guanylate cyclase catalytic domain Tbd_0984 PF12706 Beta-lactamase superfamily domain Tbd_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0987 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0987 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Tbd_0987 PF00672 HAMP domain Tbd_0987 PF01627 Hpt domain Tbd_0987 PF00072 Response regulator receiver domain Tbd_0988 PF08402 TOBE domain Tbd_0988 PF00005 ABC transporter Tbd_0992 PF00877 NlpC/P60 family Tbd_0994 PF03109 ABC1 family Tbd_0995 PF08448 PAS fold Tbd_0995 PF00563 EAL domain Tbd_0995 PF00990 Diguanylate cyclase, GGDEF domain Tbd_0997 PF04851 Type III restriction enzyme, res subunit Tbd_0997 PF13307 Helicase C-terminal domain Tbd_0999 PF00578 AhpC/TSA family Tbd_1000 PF01713 Smr domain Tbd_1001 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1002 PF09397 Ftsk gamma domain Tbd_1002 PF17854 FtsK alpha domain Tbd_1002 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Tbd_1002 PF01580 FtsK/SpoIIIE family Tbd_1003 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tbd_1004 PF02542 YgbB family Tbd_1006 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1006 PF00563 EAL domain Tbd_1006 PF03707 Bacterial signalling protein N terminal repeat Tbd_1007 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tbd_1007 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tbd_1007 PF02824 TGS domain Tbd_1007 PF03129 Anticodon binding domain Tbd_1008 PF05198 Translation initiation factor IF-3, N-terminal domain Tbd_1008 PF00707 Translation initiation factor IF-3, C-terminal domain Tbd_1009 PF01632 Ribosomal protein L35 Tbd_1010 PF00453 Ribosomal protein L20 Tbd_1011 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Tbd_1011 PF01409 tRNA synthetases class II core domain (F) Tbd_1012 PF03484 tRNA synthetase B5 domain Tbd_1012 PF01588 Putative tRNA binding domain Tbd_1012 PF03483 B3/4 domain Tbd_1012 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Tbd_1012 PF03147 Ferredoxin-fold anticodon binding domain Tbd_1013 PF00216 Bacterial DNA-binding protein Tbd_1015 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tbd_1015 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tbd_1019 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Tbd_1020 PF10017 Histidine-specific methyltransferase, SAM-dependent Tbd_1021 PF00586 AIR synthase related protein, N-terminal domain Tbd_1021 PF02769 AIR synthase related protein, C-terminal domain Tbd_1023 PF06463 Molybdenum Cofactor Synthesis C Tbd_1023 PF04055 Radical SAM superfamily Tbd_1024 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Tbd_1025 PF03453 MoeA N-terminal region (domain I and II) Tbd_1025 PF00994 Probable molybdopterin binding domain Tbd_1025 PF03454 MoeA C-terminal region (domain IV) Tbd_1027 PF02391 MoaE protein Tbd_1029 PF01292 Prokaryotic cytochrome b561 Tbd_1032 PF04264 YceI-like domain Tbd_1033 PF12392 Collagenase Tbd_1033 PF01136 Peptidase family U32 Tbd_1034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_1034 PF03459 TOBE domain Tbd_1036 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Tbd_1039 PF00072 Response regulator receiver domain Tbd_1039 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1039 PF00563 EAL domain Tbd_1042 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1042 PF00563 EAL domain Tbd_1042 PF03707 Bacterial signalling protein N terminal repeat Tbd_1044 PF17113 Regulatory signalling modulator protein AmpE Tbd_1044 PF03186 CobD/Cbib protein Tbd_1045 PF07670 Nucleoside recognition Tbd_1046 PF02541 Ppx/GppA phosphatase family Tbd_1051 PF13091 PLD-like domain Tbd_1051 PF13396 Phospholipase_D-nuclease N-terminal Tbd_1056 PF07681 DoxX Tbd_1059 PF13847 Methyltransferase domain Tbd_1061 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1061 PF00989 PAS fold Tbd_1061 PF00563 EAL domain Tbd_1061 PF01590 GAF domain Tbd_1072 PF07732 Multicopper oxidase Tbd_1072 PF07731 Multicopper oxidase Tbd_1072 PF00394 Multicopper oxidase Tbd_1076 PF13847 Methyltransferase domain Tbd_1077 PF00270 DEAD/DEAH box helicase Tbd_1077 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Tbd_1077 PF17191 RecG wedge domain Tbd_1078 PF00183 Hsp90 protein Tbd_1078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1080 PF00534 Glycosyl transferases group 1 Tbd_1080 PF13439 Glycosyltransferase Family 4 Tbd_1083 PF00005 ABC transporter Tbd_1085 PF13089 Polyphosphate kinase N-terminal domain Tbd_1085 PF02503 Polyphosphate kinase middle domain Tbd_1085 PF13090 Polyphosphate kinase C-terminal domain 2 Tbd_1085 PF17941 Polyphosphate kinase C-terminal domain 1 Tbd_1087 PF00300 Histidine phosphatase superfamily (branch 1) Tbd_1088 PF01514 Secretory protein of YscJ/FliF family Tbd_1088 PF08345 Flagellar M-ring protein C-terminal Tbd_1089 PF14841 FliG middle domain Tbd_1089 PF14842 FliG N-terminal domain Tbd_1089 PF01706 FliG C-terminal domain Tbd_1091 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_1091 PF18269 T3SS EscN ATPase C-terminal domain Tbd_1094 PF04347 Flagellar biosynthesis protein, FliO Tbd_1095 PF00813 FliP family Tbd_1096 PF01313 Bacterial export proteins, family 3 Tbd_1097 PF01311 Bacterial export proteins, family 1 Tbd_1098 PF00701 Dihydrodipicolinate synthetase family Tbd_1099 PF06804 NlpB/DapX lipoprotein Tbd_1100 PF00753 Metallo-beta-lactamase superfamily Tbd_1101 PF00270 DEAD/DEAH box helicase Tbd_1101 PF00271 Helicase conserved C-terminal domain Tbd_1103 PF16123 Hydroxyacylglutathione hydrolase C-terminus Tbd_1103 PF00753 Metallo-beta-lactamase superfamily Tbd_1104 PF00042 Globin Tbd_1104 PF00175 Oxidoreductase NAD-binding domain Tbd_1104 PF00970 Oxidoreductase FAD-binding domain Tbd_1105 PF01641 SelR domain Tbd_1107 PF13183 4Fe-4S dicluster domain Tbd_1107 PF02754 Cysteine-rich domain Tbd_1112 PF02678 Pirin Tbd_1112 PF05726 Pirin C-terminal cupin domain Tbd_1114 PF01545 Cation efflux family Tbd_1114 PF16916 Dimerisation domain of Zinc Transporter Tbd_1115 PF03458 UPF0126 domain Tbd_1116 PF03466 LysR substrate binding domain Tbd_1116 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_1117 PF02525 Flavodoxin-like fold Tbd_1118 PF05726 Pirin C-terminal cupin domain Tbd_1118 PF02678 Pirin Tbd_1120 PF00696 Amino acid kinase family Tbd_1120 PF01472 PUA domain Tbd_1121 PF00300 Histidine phosphatase superfamily (branch 1) Tbd_1122 PF01497 Periplasmic binding protein Tbd_1123 PF01475 Ferric uptake regulator family Tbd_1124 PF04355 SmpA / OmlA family Tbd_1125 PF05173 Dihydrodipicolinate reductase, C-terminus Tbd_1125 PF01113 Dihydrodipicolinate reductase, N-terminus Tbd_1126 PF00462 Glutaredoxin Tbd_1127 PF00117 Glutamine amidotransferase class-I Tbd_1127 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tbd_1128 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tbd_1128 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tbd_1128 PF02142 MGS-like domain Tbd_1129 PF01272 Transcription elongation factor, GreA/GreB, C-term Tbd_1129 PF03449 Transcription elongation factor, N-terminal Tbd_1131 PF01985 CRS1 / YhbY (CRM) domain Tbd_1132 PF01728 FtsJ-like methyltransferase Tbd_1133 PF01434 Peptidase family M41 Tbd_1133 PF06480 FtsH Extracellular Tbd_1133 PF17862 AAA+ lid domain Tbd_1133 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1134 PF00809 Pterin binding enzyme Tbd_1135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tbd_1135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tbd_1135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tbd_1135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tbd_1136 PF12849 PBP superfamily domain Tbd_1137 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1138 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1139 PF00005 ABC transporter Tbd_1140 PF00121 Triosephosphate isomerase Tbd_1141 PF03840 Preprotein translocase SecG subunit Tbd_1142 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tbd_1143 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tbd_1144 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Tbd_1145 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Tbd_1147 PF10531 SLBB domain Tbd_1147 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tbd_1147 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tbd_1148 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tbd_1148 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Tbd_1148 PF00384 Molybdopterin oxidoreductase Tbd_1149 PF00146 NADH dehydrogenase Tbd_1150 PF12838 4Fe-4S dicluster domain Tbd_1151 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Tbd_1152 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Tbd_1153 PF00361 Proton-conducting membrane transporter Tbd_1153 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tbd_1154 PF00361 Proton-conducting membrane transporter Tbd_1154 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Tbd_1155 PF00361 Proton-conducting membrane transporter Tbd_1159 PF00488 MutS domain V Tbd_1159 PF01624 MutS domain I Tbd_1159 PF05190 MutS family domain IV Tbd_1159 PF05188 MutS domain II Tbd_1159 PF05192 MutS domain III Tbd_1160 PF00459 Inositol monophosphatase family Tbd_1161 PF00588 SpoU rRNA Methylase family Tbd_1162 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_1163 PF02082 Transcriptional regulator Tbd_1164 PF00266 Aminotransferase class-V Tbd_1165 PF01592 NifU-like N terminal domain Tbd_1166 PF01521 Iron-sulphur cluster biosynthesis Tbd_1167 PF07743 HSCB C-terminal oligomerisation domain Tbd_1168 PF00012 Hsp70 protein Tbd_1169 PF00111 2Fe-2S iron-sulfur cluster binding domain Tbd_1170 PF04384 Iron-sulphur cluster assembly Tbd_1172 PF16657 Maltogenic Amylase, C-terminal domain Tbd_1172 PF00128 Alpha amylase, catalytic domain Tbd_1173 PF00128 Alpha amylase, catalytic domain Tbd_1173 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tbd_1173 PF11941 Domain of unknown function (DUF3459) Tbd_1174 PF02446 4-alpha-glucanotransferase Tbd_1175 PF00483 Nucleotidyl transferase Tbd_1177 PF00771 FHIPEP family Tbd_1178 PF00448 SRP54-type protein, GTPase domain Tbd_1180 PF04542 Sigma-70 region 2 Tbd_1180 PF04539 Sigma-70 region 3 Tbd_1180 PF04545 Sigma-70, region 4 Tbd_1181 PF03949 Malic enzyme, NAD binding domain Tbd_1181 PF00390 Malic enzyme, N-terminal domain Tbd_1183 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tbd_1184 PF00890 FAD binding domain Tbd_1184 PF02910 Fumarate reductase flavoprotein C-term Tbd_1185 PF13085 2Fe-2S iron-sulfur cluster binding domain Tbd_1186 PF03937 Flavinator of succinate dehydrogenase Tbd_1187 PF00285 Citrate synthase, C-terminal domain Tbd_1188 PF00676 Dehydrogenase E1 component Tbd_1188 PF02779 Transketolase, pyrimidine binding domain Tbd_1188 PF16870 2-oxoglutarate dehydrogenase C-terminal Tbd_1188 PF16078 2-oxoglutarate dehydrogenase N-terminus Tbd_1189 PF02817 e3 binding domain Tbd_1189 PF00364 Biotin-requiring enzyme Tbd_1189 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Tbd_1190 PF00005 ABC transporter Tbd_1191 PF03707 Bacterial signalling protein N terminal repeat Tbd_1191 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1191 PF00563 EAL domain Tbd_1192 PF00072 Response regulator receiver domain Tbd_1193 PF00989 PAS fold Tbd_1193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1193 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1195 PF01661 Macro domain Tbd_1200 PF00248 Aldo/keto reductase family Tbd_1206 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_1206 PF12464 Maltose acetyltransferase Tbd_1206 PF14602 Hexapeptide repeat of succinyl-transferase Tbd_1215 PF00589 Phage integrase family Tbd_1215 PF13495 Phage integrase, N-terminal SAM-like domain Tbd_1216 PF14437 MafB19-like deaminase Tbd_1219 PF01435 Peptidase family M48 Tbd_1220 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_1220 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Tbd_1220 PF14602 Hexapeptide repeat of succinyl-transferase Tbd_1221 PF00155 Aminotransferase class I and II Tbd_1222 PF00892 EamA-like transporter family Tbd_1226 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tbd_1227 PF14489 QueF-like protein Tbd_1228 PF06470 SMC proteins Flexible Hinge Domain Tbd_1228 PF02463 RecF/RecN/SMC N terminal domain Tbd_1229 PF02403 Seryl-tRNA synthetase N-terminal domain Tbd_1229 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tbd_1230 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tbd_1230 PF01464 Transglycosylase SLT domain Tbd_1232 PF06798 PrkA serine protein kinase C-terminal domain Tbd_1232 PF08298 PrkA AAA domain Tbd_1233 PF04285 Protein of unknown function (DUF444) Tbd_1234 PF04293 SpoVR like protein Tbd_1235 PF00355 Rieske [2Fe-2S] domain Tbd_1236 PF02617 ATP-dependent Clp protease adaptor protein ClpS Tbd_1237 PF07724 AAA domain (Cdc48 subfamily) Tbd_1237 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1237 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_1237 PF17871 AAA lid domain Tbd_1237 PF02861 Clp amino terminal domain, pathogenicity island component Tbd_1239 PF01050 Mannose-6-phosphate isomerase Tbd_1239 PF00483 Nucleotidyl transferase Tbd_1240 PF05247 Flagellar transcriptional activator (FlhD) Tbd_1241 PF05280 Flagellar transcriptional activator (FlhC) Tbd_1243 PF01618 MotA/TolQ/ExbB proton channel family Tbd_1244 PF13677 Membrane MotB of proton-channel complex MotA/MotB Tbd_1244 PF00691 OmpA family Tbd_1245 PF01312 FlhB HrpN YscU SpaS Family Tbd_1246 PF00771 FHIPEP family Tbd_1247 PF00448 SRP54-type protein, GTPase domain Tbd_1249 PF04545 Sigma-70, region 4 Tbd_1249 PF04539 Sigma-70 region 3 Tbd_1249 PF04542 Sigma-70 region 2 Tbd_1250 PF01618 MotA/TolQ/ExbB proton channel family Tbd_1251 PF13677 Membrane MotB of proton-channel complex MotA/MotB Tbd_1251 PF00691 OmpA family Tbd_1252 PF02190 ATP-dependent protease La (LON) substrate-binding domain Tbd_1252 PF05362 Lon protease (S16) C-terminal proteolytic domain Tbd_1252 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1253 PF13686 DsrE/DsrF/DrsH-like family Tbd_1254 PF01206 Sulfurtransferase TusA Tbd_1256 PF02616 Segregation and condensation protein ScpA Tbd_1257 PF04079 Segregation and condensation complex subunit ScpB Tbd_1258 PF00849 RNA pseudouridylate synthase Tbd_1258 PF01479 S4 domain Tbd_1261 PF00042 Globin Tbd_1261 PF00970 Oxidoreductase FAD-binding domain Tbd_1261 PF00175 Oxidoreductase NAD-binding domain Tbd_1265 PF00360 Phytochrome region Tbd_1265 PF00563 EAL domain Tbd_1265 PF01590 GAF domain Tbd_1265 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1266 PF00593 TonB dependent receptor Tbd_1266 PF07715 TonB-dependent Receptor Plug Domain Tbd_1268 PF01627 Hpt domain Tbd_1268 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Tbd_1268 PF00072 Response regulator receiver domain Tbd_1268 PF00672 HAMP domain Tbd_1268 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1269 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1269 PF03707 Bacterial signalling protein N terminal repeat Tbd_1269 PF00563 EAL domain Tbd_1270 PF05175 Methyltransferase small domain Tbd_1271 PF01546 Peptidase family M20/M25/M40 Tbd_1271 PF07687 Peptidase dimerisation domain Tbd_1273 PF00664 ABC transporter transmembrane region Tbd_1273 PF00005 ABC transporter Tbd_1276 PF01593 Flavin containing amine oxidoreductase Tbd_1277 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1280 PF00266 Aminotransferase class-V Tbd_1281 PF03781 Sulfatase-modifying factor enzyme 1 Tbd_1281 PF12867 DinB superfamily Tbd_1282 PF00581 Rhodanese-like domain Tbd_1282 PF00753 Metallo-beta-lactamase superfamily Tbd_1284 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1285 PF00005 ABC transporter Tbd_1285 PF03459 TOBE domain Tbd_1287 PF00072 Response regulator receiver domain Tbd_1287 PF00486 Transcriptional regulatory protein, C terminal Tbd_1288 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1288 PF00672 HAMP domain Tbd_1288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1289 PF05231 MASE1 Tbd_1289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1289 PF07730 Histidine kinase Tbd_1290 PF00196 Bacterial regulatory proteins, luxR family Tbd_1290 PF00072 Response regulator receiver domain Tbd_1292 PF00149 Calcineurin-like phosphoesterase Tbd_1292 PF02872 5'-nucleotidase, C-terminal domain Tbd_1293 PF08334 Type II secretion system (T2SS), protein G Tbd_1293 PF07963 Prokaryotic N-terminal methylation motif Tbd_1294 PF00482 Type II secretion system (T2SS), protein F Tbd_1295 PF00437 Type II/IV secretion system protein Tbd_1295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_1300 PF03958 Bacterial type II/III secretion system short domain Tbd_1300 PF00263 Bacterial type II and III secretion system protein Tbd_1301 PF07963 Prokaryotic N-terminal methylation motif Tbd_1301 PF08334 Type II secretion system (T2SS), protein G Tbd_1302 PF07963 Prokaryotic N-terminal methylation motif Tbd_1302 PF00114 Pilin (bacterial filament) Tbd_1304 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Tbd_1304 PF10091 Putative glucoamylase Tbd_1304 PF06165 Glycosyltransferase family 36 Tbd_1305 PF12146 Serine aminopeptidase, S33 Tbd_1306 PF00580 UvrD/REP helicase N-terminal domain Tbd_1306 PF13361 UvrD-like helicase C-terminal domain Tbd_1309 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_1309 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_1311 PF04349 Periplasmic glucan biosynthesis protein, MdoG Tbd_1318 PF02899 Phage integrase, N-terminal SAM-like domain Tbd_1318 PF00589 Phage integrase family Tbd_1324 PF00394 Multicopper oxidase Tbd_1324 PF07731 Multicopper oxidase Tbd_1324 PF07732 Multicopper oxidase Tbd_1325 PF05275 Copper resistance protein B precursor (CopB) Tbd_1327 PF00873 AcrB/AcrD/AcrF family Tbd_1328 PF00529 HlyD membrane-fusion protein of T1SS Tbd_1328 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tbd_1329 PF02321 Outer membrane efflux protein Tbd_1331 PF01526 Tn3 transposase DDE domain Tbd_1331 PF13700 Domain of unknown function (DUF4158) Tbd_1333 PF00873 AcrB/AcrD/AcrF family Tbd_1334 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tbd_1334 PF00529 HlyD membrane-fusion protein of T1SS Tbd_1337 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Tbd_1338 PF00376 MerR family regulatory protein Tbd_1338 PF09278 MerR, DNA binding Tbd_1339 PF02411 MerT mercuric transport protein Tbd_1340 PF00403 Heavy-metal-associated domain Tbd_1341 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1341 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_1341 PF00403 Heavy-metal-associated domain Tbd_1356 PF02321 Outer membrane efflux protein Tbd_1359 PF00005 ABC transporter Tbd_1359 PF02687 FtsX-like permease family Tbd_1359 PF12704 MacB-like periplasmic core domain Tbd_1361 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tbd_1363 PF01926 50S ribosome-binding GTPase Tbd_1363 PF16360 GTP-binding GTPase Middle Region Tbd_1363 PF13167 GTP-binding GTPase N-terminal Tbd_1366 PF13188 PAS domain Tbd_1366 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1366 PF03707 Bacterial signalling protein N terminal repeat Tbd_1366 PF00563 EAL domain Tbd_1369 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_1369 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_1370 PF00011 Hsp20/alpha crystallin family Tbd_1374 PF04955 HupE / UreJ protein Tbd_1375 PF00374 Nickel-dependent hydrogenase Tbd_1378 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tbd_1378 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Tbd_1380 PF01750 Hydrogenase maturation protease Tbd_1381 PF01455 HupF/HypC family Tbd_1382 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Tbd_1383 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tbd_1384 PF01924 Hydrogenase formation hypA family Tbd_1385 PF00708 Acylphosphatase Tbd_1385 PF07503 HypF finger Tbd_1385 PF01300 Telomere recombination Tbd_1385 PF17788 HypF Kae1-like domain Tbd_1386 PF00586 AIR synthase related protein, N-terminal domain Tbd_1386 PF02769 AIR synthase related protein, C-terminal domain Tbd_1388 PF00571 CBS domain Tbd_1389 PF18764 Nitrous oxide reductase propeller repeat Tbd_1389 PF13473 Cupredoxin-like domain Tbd_1389 PF18793 Nitrous oxide reductase propeller repeat 2 Tbd_1390 PF04205 FMN-binding domain Tbd_1390 PF12801 4Fe-4S binding domain Tbd_1391 PF05048 Periplasmic copper-binding protein (NosD) Tbd_1392 PF00005 ABC transporter Tbd_1393 PF12679 ABC-2 family transporter protein Tbd_1399 PF00196 Bacterial regulatory proteins, luxR family Tbd_1399 PF00072 Response regulator receiver domain Tbd_1400 PF00672 HAMP domain Tbd_1400 PF07730 Histidine kinase Tbd_1400 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Tbd_1400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1401 PF07690 Major Facilitator Superfamily Tbd_1402 PF07690 Major Facilitator Superfamily Tbd_1403 PF14710 Respiratory nitrate reductase alpha N-terminal Tbd_1403 PF01568 Molydopterin dinucleotide binding domain Tbd_1403 PF00384 Molybdopterin oxidoreductase Tbd_1404 PF13247 4Fe-4S dicluster domain Tbd_1404 PF14711 Respiratory nitrate reductase beta C-terminal Tbd_1405 PF02613 Nitrate reductase delta subunit Tbd_1406 PF02665 Nitrate reductase gamma subunit Tbd_1407 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1408 PF04358 DsrC like protein Tbd_1411 PF03707 Bacterial signalling protein N terminal repeat Tbd_1411 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1411 PF00563 EAL domain Tbd_1412 PF00005 ABC transporter Tbd_1412 PF12704 MacB-like periplasmic core domain Tbd_1412 PF02687 FtsX-like permease family Tbd_1413 PF12704 MacB-like periplasmic core domain Tbd_1413 PF00005 ABC transporter Tbd_1413 PF02687 FtsX-like permease family Tbd_1415 PF02321 Outer membrane efflux protein Tbd_1416 PF02321 Outer membrane efflux protein Tbd_1417 PF00873 AcrB/AcrD/AcrF family Tbd_1418 PF00529 HlyD membrane-fusion protein of T1SS Tbd_1418 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tbd_1420 PF12849 PBP superfamily domain Tbd_1425 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tbd_1426 PF01758 Sodium Bile acid symporter family Tbd_1428 PF13847 Methyltransferase domain Tbd_1431 PF00226 DnaJ domain Tbd_1431 PF01556 DnaJ C terminal domain Tbd_1432 PF07963 Prokaryotic N-terminal methylation motif Tbd_1432 PF08334 Type II secretion system (T2SS), protein G Tbd_1433 PF00482 Type II secretion system (T2SS), protein F Tbd_1434 PF00437 Type II/IV secretion system protein Tbd_1439 PF07660 Secretin and TonB N terminus short domain Tbd_1439 PF03958 Bacterial type II/III secretion system short domain Tbd_1439 PF00263 Bacterial type II and III secretion system protein Tbd_1439 PF11741 AMIN domain Tbd_1440 PF07963 Prokaryotic N-terminal methylation motif Tbd_1440 PF00114 Pilin (bacterial filament) Tbd_1441 PF08334 Type II secretion system (T2SS), protein G Tbd_1441 PF07963 Prokaryotic N-terminal methylation motif Tbd_1445 PF00011 Hsp20/alpha crystallin family Tbd_1446 PF14716 Helix-hairpin-helix domain Tbd_1446 PF14791 DNA polymerase beta thumb Tbd_1446 PF02811 PHP domain Tbd_1453 PF01820 D-ala D-ala ligase N-terminus Tbd_1453 PF07478 D-ala D-ala ligase C-terminus Tbd_1456 PF00563 EAL domain Tbd_1456 PF03707 Bacterial signalling protein N terminal repeat Tbd_1456 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1462 PF00924 Mechanosensitive ion channel Tbd_1463 PF01176 Translation initiation factor 1A / IF-1 Tbd_1464 PF09587 Bacterial capsule synthesis protein PGA_cap Tbd_1465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tbd_1465 PF14572 Phosphoribosyl synthetase-associated domain Tbd_1469 PF00106 short chain dehydrogenase Tbd_1471 PF16363 GDP-mannose 4,6 dehydratase Tbd_1472 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1472 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_1474 PF13091 PLD-like domain Tbd_1475 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_1480 PF03707 Bacterial signalling protein N terminal repeat Tbd_1480 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1480 PF00563 EAL domain Tbd_1481 PF03167 Uracil DNA glycosylase superfamily Tbd_1482 PF01066 CDP-alcohol phosphatidyltransferase Tbd_1483 PF01726 LexA DNA binding domain Tbd_1483 PF00717 Peptidase S24-like Tbd_1491 PF01555 DNA methylase Tbd_1494 PF09722 Protein of unknown function (DUF2384) Tbd_1495 PF11871 Domain of unknown function (DUF3391) Tbd_1495 PF01966 HD domain Tbd_1496 PF12002 MgsA AAA+ ATPase C terminal Tbd_1496 PF16193 AAA C-terminal domain Tbd_1496 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1497 PF03548 Outer membrane lipoprotein carrier protein LolA Tbd_1500 PF03030 Inorganic H+ pyrophosphatase Tbd_1502 PF00365 Phosphofructokinase Tbd_1504 PF05191 Adenylate kinase, active site lid Tbd_1505 PF02348 Cytidylyltransferase Tbd_1506 PF03966 Trm112p-like protein Tbd_1507 PF17151 Periplasmic sensor domain Tbd_1507 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1508 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Tbd_1509 PF02472 Biopolymer transport protein ExbD/TolR Tbd_1510 PF01618 MotA/TolQ/ExbB proton channel family Tbd_1511 PF02601 Exonuclease VII, large subunit Tbd_1511 PF13742 OB-fold nucleic acid binding domain Tbd_1513 PF00274 Fructose-bisphosphate aldolase class-I Tbd_1517 PF08676 MutL C terminal dimerisation domain Tbd_1517 PF01119 DNA mismatch repair protein, C-terminal domain Tbd_1519 PF01520 N-acetylmuramoyl-L-alanine amidase Tbd_1519 PF11741 AMIN domain Tbd_1520 PF08331 Domain of unknown function (DUF1730) Tbd_1522 PF01177 Asp/Glu/Hydantoin racemase Tbd_1523 PF00472 RF-1 domain Tbd_1525 PF00579 tRNA synthetases class I (W and Y) Tbd_1526 PF02163 Peptidase family M50 Tbd_1527 PF01300 Telomere recombination Tbd_1528 PF02811 PHP domain Tbd_1529 PF04279 Intracellular septation protein A Tbd_1530 PF03795 YCII-related domain Tbd_1531 PF01722 BolA-like protein Tbd_1533 PF17209 Hfq protein Tbd_1534 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Tbd_1536 PF00535 Glycosyl transferase family 2 Tbd_1537 PF01025 GrpE Tbd_1538 PF00012 Hsp70 protein Tbd_1539 PF00226 DnaJ domain Tbd_1539 PF00684 DnaJ central domain Tbd_1539 PF01556 DnaJ C terminal domain Tbd_1540 PF01026 TatD related DNase Tbd_1542 PF09115 DNA polymerase III, delta subunit, C terminal Tbd_1543 PF02223 Thymidylate kinase Tbd_1544 PF02618 YceG-like family Tbd_1545 PF01063 Amino-transferase class IV Tbd_1546 PF04715 Anthranilate synthase component I, N terminal region Tbd_1546 PF00425 chorismate binding enzyme Tbd_1547 PF02801 Beta-ketoacyl synthase, C-terminal domain Tbd_1547 PF00109 Beta-ketoacyl synthase, N-terminal domain Tbd_1548 PF00550 Phosphopantetheine attachment site Tbd_1550 PF00698 Acyl transferase domain Tbd_1551 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Tbd_1551 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Tbd_1552 PF02504 Fatty acid synthesis protein Tbd_1553 PF01783 Ribosomal L32p protein family Tbd_1554 PF02620 Large ribosomal RNA subunit accumulation protein YceD Tbd_1555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tbd_1555 PF02785 Biotin carboxylase C-terminal domain Tbd_1555 PF00289 Biotin carboxylase, N-terminal domain Tbd_1556 PF00364 Biotin-requiring enzyme Tbd_1556 PF02436 Conserved carboxylase domain Tbd_1556 PF00682 HMGL-like Tbd_1557 PF02545 Maf-like protein Tbd_1558 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tbd_1560 PF01343 Peptidase family S49 Tbd_1560 PF06965 Na+/H+ antiporter 1 Tbd_1562 PF13419 Haloacid dehalogenase-like hydrolase Tbd_1563 PF00849 RNA pseudouridylate synthase Tbd_1563 PF01479 S4 domain Tbd_1564 PF00575 S1 RNA binding domain Tbd_1564 PF10150 Ribonuclease E/G family Tbd_1564 PF12111 Polyribonucleotide phosphorylase C terminal Tbd_1565 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tbd_1568 PF17757 UvrB interaction domain Tbd_1568 PF02151 UvrB/uvrC motif Tbd_1568 PF12344 Ultra-violet resistance protein B Tbd_1568 PF04851 Type III restriction enzyme, res subunit Tbd_1568 PF00271 Helicase conserved C-terminal domain Tbd_1571 PF00589 Phage integrase family Tbd_1576 PF01230 HIT domain Tbd_1577 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tbd_1578 PF05977 Transmembrane secretion effector Tbd_1580 PF00156 Phosphoribosyl transferase domain Tbd_1580 PF01738 Dienelactone hydrolase family Tbd_1583 PF12704 MacB-like periplasmic core domain Tbd_1583 PF00005 ABC transporter Tbd_1583 PF02687 FtsX-like permease family Tbd_1584 PF00156 Phosphoribosyl transferase domain Tbd_1584 PF01738 Dienelactone hydrolase family Tbd_1586 PF01875 Memo-like protein Tbd_1587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1587 PF07730 Histidine kinase Tbd_1587 PF05231 MASE1 Tbd_1588 PF00072 Response regulator receiver domain Tbd_1588 PF00196 Bacterial regulatory proteins, luxR family Tbd_1589 PF17151 Periplasmic sensor domain Tbd_1589 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1590 PF00700 Bacterial flagellin C-terminal helical region Tbd_1590 PF00669 Bacterial flagellin N-terminal helical region Tbd_1592 PF02465 Flagellar hook-associated protein 2 N-terminus Tbd_1592 PF07195 Flagellar hook-associated protein 2 C-terminus Tbd_1593 PF02561 Flagellar protein FliS Tbd_1596 PF01312 FlhB HrpN YscU SpaS Family Tbd_1597 PF07238 PilZ domain Tbd_1597 PF07317 Flagellar regulator YcgR Tbd_1598 PF00072 Response regulator receiver domain Tbd_1598 PF01584 CheW-like domain Tbd_1599 PF02049 Flagellar hook-basal body complex protein FliE Tbd_1600 PF08345 Flagellar M-ring protein C-terminal Tbd_1600 PF01514 Secretory protein of YscJ/FliF family Tbd_1601 PF14841 FliG middle domain Tbd_1601 PF01706 FliG C-terminal domain Tbd_1601 PF14842 FliG N-terminal domain Tbd_1603 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_1603 PF18269 T3SS EscN ATPase C-terminal domain Tbd_1607 PF02154 Flagellar motor switch protein FliM Tbd_1607 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tbd_1608 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tbd_1608 PF16973 Flagellar motor switch protein FliN N-terminal Tbd_1609 PF04347 Flagellar biosynthesis protein, FliO Tbd_1610 PF00813 FliP family Tbd_1611 PF01313 Bacterial export proteins, family 3 Tbd_1612 PF01311 Bacterial export proteins, family 1 Tbd_1613 PF04344 Chemotaxis phosphatase, CheZ Tbd_1614 PF00072 Response regulator receiver domain Tbd_1615 PF01339 CheB methylesterase Tbd_1615 PF00072 Response regulator receiver domain Tbd_1616 PF03975 CheD chemotactic sensory transduction Tbd_1617 PF03705 CheR methyltransferase, all-alpha domain Tbd_1617 PF01739 CheR methyltransferase, SAM binding domain Tbd_1618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1618 PF08447 PAS fold Tbd_1619 PF00672 HAMP domain Tbd_1619 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1619 PF02203 Tar ligand binding domain homologue Tbd_1620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1620 PF02203 Tar ligand binding domain homologue Tbd_1620 PF00672 HAMP domain Tbd_1621 PF02872 5'-nucleotidase, C-terminal domain Tbd_1621 PF00149 Calcineurin-like phosphoesterase Tbd_1622 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1622 PF00672 HAMP domain Tbd_1622 PF02203 Tar ligand binding domain homologue Tbd_1623 PF01584 CheW-like domain Tbd_1624 PF09078 CheY binding Tbd_1624 PF01627 Hpt domain Tbd_1624 PF02895 Signal transducing histidine kinase, homodimeric domain Tbd_1624 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1624 PF01584 CheW-like domain Tbd_1625 PF00072 Response regulator receiver domain Tbd_1627 PF00669 Bacterial flagellin N-terminal helical region Tbd_1628 PF00460 Flagella basal body rod protein Tbd_1628 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1629 PF10135 Rod binding protein Tbd_1629 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Tbd_1630 PF02119 Flagellar P-ring protein Tbd_1631 PF02107 Flagellar L-ring protein Tbd_1632 PF00460 Flagella basal body rod protein Tbd_1632 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1633 PF00460 Flagella basal body rod protein Tbd_1633 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1634 PF07559 Flagellar basal body protein FlaE Tbd_1634 PF00460 Flagella basal body rod protein Tbd_1634 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1635 PF13861 FlgD Tudor-like domain Tbd_1635 PF13860 FlgD Ig-like domain Tbd_1635 PF03963 Flagellar hook capping protein - N-terminal region Tbd_1636 PF00460 Flagella basal body rod protein Tbd_1636 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1637 PF00460 Flagella basal body rod protein Tbd_1639 PF04316 Anti-sigma-28 factor, FlgM Tbd_1641 PF01266 FAD dependent oxidoreductase Tbd_1641 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Tbd_1643 PF01613 Flavin reductase like domain Tbd_1645 PF02754 Cysteine-rich domain Tbd_1646 PF13183 4Fe-4S dicluster domain Tbd_1646 PF13085 2Fe-2S iron-sulfur cluster binding domain Tbd_1647 PF00355 Rieske [2Fe-2S] domain Tbd_1647 PF01266 FAD dependent oxidoreductase Tbd_1648 PF01593 Flavin containing amine oxidoreductase Tbd_1652 PF00719 Inorganic pyrophosphatase Tbd_1654 PF08281 Sigma-70, region 4 Tbd_1654 PF04542 Sigma-70 region 2 Tbd_1656 PF00270 DEAD/DEAH box helicase Tbd_1656 PF17757 UvrB interaction domain Tbd_1656 PF03461 TRCF domain Tbd_1656 PF00271 Helicase conserved C-terminal domain Tbd_1656 PF02559 CarD-like/TRCF domain Tbd_1660 PF00563 EAL domain Tbd_1660 PF08448 PAS fold Tbd_1660 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1662 PF00929 Exonuclease Tbd_1663 PF00075 RNase H Tbd_1665 PF00753 Metallo-beta-lactamase superfamily Tbd_1665 PF16123 Hydroxyacylglutathione hydrolase C-terminus Tbd_1666 PF01476 LysM domain Tbd_1666 PF01464 Transglycosylase SLT domain Tbd_1668 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tbd_1668 PF00005 ABC transporter Tbd_1669 PF12911 N-terminal TM domain of oligopeptide transport permease C Tbd_1669 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1670 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1673 PF13145 PPIC-type PPIASE domain Tbd_1674 PF00216 Bacterial DNA-binding protein Tbd_1675 PF05362 Lon protease (S16) C-terminal proteolytic domain Tbd_1675 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1675 PF02190 ATP-dependent protease La (LON) substrate-binding domain Tbd_1676 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_1676 PF07724 AAA domain (Cdc48 subfamily) Tbd_1676 PF06689 ClpX C4-type zinc finger Tbd_1677 PF00574 Clp protease Tbd_1678 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_1678 PF05697 Bacterial trigger factor protein (TF) Tbd_1678 PF05698 Bacterial trigger factor protein (TF) C-terminus Tbd_1679 PF00589 Phage integrase family Tbd_1682 PF00565 Staphylococcal nuclease homologue Tbd_1686 PF03389 MobA/MobL family Tbd_1686 PF17841 BID domain of Bartonella effector protein (Bep) Tbd_1686 PF01443 Viral (Superfamily 1) RNA helicase Tbd_1692 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1698 PF01134 Glucose inhibited division protein A Tbd_1699 PF00106 short chain dehydrogenase Tbd_1700 PF03793 PASTA domain Tbd_1700 PF00069 Protein kinase domain Tbd_1701 PF00909 Ammonium Transporter Family Tbd_1702 PF00902 Sec-independent protein translocase protein (TatC) Tbd_1703 PF02416 mttA/Hcf106 family Tbd_1704 PF02416 mttA/Hcf106 family Tbd_1706 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tbd_1707 PF01502 Phosphoribosyl-AMP cyclohydrolase Tbd_1708 PF00977 Histidine biosynthesis protein Tbd_1709 PF00977 Histidine biosynthesis protein Tbd_1710 PF00117 Glutamine amidotransferase class-I Tbd_1711 PF00475 Imidazoleglycerol-phosphate dehydratase Tbd_1712 PF00155 Aminotransferase class I and II Tbd_1713 PF00815 Histidinol dehydrogenase Tbd_1717 PF03466 LysR substrate binding domain Tbd_1717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_1718 PF07690 Major Facilitator Superfamily Tbd_1720 PF04536 TPM domain Tbd_1721 PF04011 LemA family Tbd_1722 PF08241 Methyltransferase domain Tbd_1723 PF03167 Uracil DNA glycosylase superfamily Tbd_1724 PF00583 Acetyltransferase (GNAT) family Tbd_1725 PF00814 Glycoprotease family Tbd_1726 PF07995 Glucose / Sorbosone dehydrogenase Tbd_1728 PF13638 PIN domain Tbd_1728 PF02562 PhoH-like protein Tbd_1732 PF13847 Methyltransferase domain Tbd_1732 PF10119 Predicted methyltransferase regulatory domain Tbd_1733 PF00270 DEAD/DEAH box helicase Tbd_1733 PF00271 Helicase conserved C-terminal domain Tbd_1734 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tbd_1735 PF00582 Universal stress protein family Tbd_1739 PF13247 4Fe-4S dicluster domain Tbd_1740 PF03916 Polysulphide reductase, NrfD Tbd_1741 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Tbd_1741 PF01568 Molydopterin dinucleotide binding domain Tbd_1741 PF00384 Molybdopterin oxidoreductase Tbd_1742 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tbd_1743 PF00196 Bacterial regulatory proteins, luxR family Tbd_1743 PF00072 Response regulator receiver domain Tbd_1744 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1744 PF00989 PAS fold Tbd_1746 PF00873 AcrB/AcrD/AcrF family Tbd_1749 PF00072 Response regulator receiver domain Tbd_1749 PF00486 Transcriptional regulatory protein, C terminal Tbd_1750 PF00672 HAMP domain Tbd_1750 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1751 PF00117 Glutamine amidotransferase class-I Tbd_1751 PF02540 NAD synthase Tbd_1751 PF00958 GMP synthase C terminal domain Tbd_1752 PF00571 CBS domain Tbd_1752 PF00478 IMP dehydrogenase / GMP reductase domain Tbd_1754 PF03658 RnfH family Ubiquitin Tbd_1755 PF03364 Polyketide cyclase / dehydrase and lipid transport Tbd_1756 PF01668 SmpB protein Tbd_1757 PF00581 Rhodanese-like domain Tbd_1758 PF02824 TGS domain Tbd_1758 PF04607 Region found in RelA / SpoT proteins Tbd_1758 PF13291 ACT domain Tbd_1759 PF03772 Competence protein Tbd_1759 PF00753 Metallo-beta-lactamase superfamily Tbd_1760 PF00005 ABC transporter Tbd_1761 PF02687 FtsX-like permease family Tbd_1761 PF12704 MacB-like periplasmic core domain Tbd_1762 PF01894 Uncharacterised protein family UPF0047 Tbd_1764 PF00919 Uncharacterized protein family UPF0004 Tbd_1764 PF04055 Radical SAM superfamily Tbd_1764 PF18693 TRAM domain Tbd_1767 PF00465 Iron-containing alcohol dehydrogenase Tbd_1770 PF00175 Oxidoreductase NAD-binding domain Tbd_1770 PF00111 2Fe-2S iron-sulfur cluster binding domain Tbd_1770 PF00970 Oxidoreductase FAD-binding domain Tbd_1771 PF17768 RecJ OB domain Tbd_1771 PF02272 DHHA1 domain Tbd_1771 PF01368 DHH family Tbd_1773 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_1774 PF16363 GDP-mannose 4,6 dehydratase Tbd_1775 PF01370 NAD dependent epimerase/dehydratase family Tbd_1776 PF16363 GDP-mannose 4,6 dehydratase Tbd_1777 PF04321 RmlD substrate binding domain Tbd_1778 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Tbd_1779 PF00483 Nucleotidyl transferase Tbd_1780 PF16363 GDP-mannose 4,6 dehydratase Tbd_1783 PF00535 Glycosyl transferase family 2 Tbd_1784 PF13439 Glycosyltransferase Family 4 Tbd_1784 PF00534 Glycosyl transferases group 1 Tbd_1792 PF09721 Transmembrane exosortase (Exosortase_EpsH) Tbd_1793 PF13614 AAA domain Tbd_1794 PF13807 G-rich domain on putative tyrosine kinase Tbd_1794 PF13614 AAA domain Tbd_1794 PF02706 Chain length determinant protein Tbd_1795 PF02563 Polysaccharide biosynthesis/export protein Tbd_1795 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Tbd_1795 PF10531 SLBB domain Tbd_1801 PF02397 Bacterial sugar transferase Tbd_1806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1806 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1807 PF00072 Response regulator receiver domain Tbd_1807 PF02954 Bacterial regulatory protein, Fis family Tbd_1807 PF00158 Sigma-54 interaction domain Tbd_1808 PF00589 Phage integrase family Tbd_1810 PF01381 Helix-turn-helix Tbd_1810 PF00145 C-5 cytosine-specific DNA methylase Tbd_1812 PF03852 DNA mismatch endonuclease Vsr Tbd_1820 PF18272 single-stranded DNA binding TraI N-terminal subdomain Tbd_1820 PF18340 DNA relaxase TraI 2B/2B-like domain Tbd_1820 PF07057 DNA helicase TraI Tbd_1820 PF08751 TrwC relaxase Tbd_1829 PF04386 Stringent starvation protein B Tbd_1830 PF02798 Glutathione S-transferase, N-terminal domain Tbd_1830 PF00043 Glutathione S-transferase, C-terminal domain Tbd_1831 PF02167 Cytochrome C1 family Tbd_1832 PF00032 Cytochrome b(C-terminal)/b6/petD Tbd_1832 PF00033 Cytochrome b/b6/petB Tbd_1833 PF00355 Rieske [2Fe-2S] domain Tbd_1833 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Tbd_1834 PF13180 PDZ domain Tbd_1834 PF17820 PDZ domain Tbd_1836 PF04542 Sigma-70 region 2 Tbd_1836 PF08281 Sigma-70, region 4 Tbd_1839 PF00929 Exonuclease Tbd_1841 PF01329 Pterin 4 alpha carbinolamine dehydratase Tbd_1842 PF03193 RsgA GTPase Tbd_1845 PF01965 DJ-1/PfpI family Tbd_1846 PF04461 Protein of unknown function (DUF520) Tbd_1848 PF06865 Pyrimidine/purine nucleoside phosphorylase Tbd_1849 PF00764 Arginosuccinate synthase Tbd_1850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tbd_1850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tbd_1851 PF00202 Aminotransferase class-III Tbd_1854 PF01649 Ribosomal protein S20 Tbd_1855 PF03023 Lipid II flippase MurJ Tbd_1856 PF01687 Riboflavin kinase Tbd_1856 PF06574 FAD synthetase Tbd_1857 PF00133 tRNA synthetases class I (I, L, M and V) Tbd_1857 PF08264 Anticodon-binding domain of tRNA Tbd_1857 PF06827 Zinc finger found in FPG and IleRS Tbd_1858 PF01252 Signal peptidase (SPase) II Tbd_1859 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_1860 PF02401 LytB protein Tbd_1864 PF07963 Prokaryotic N-terminal methylation motif Tbd_1864 PF00114 Pilin (bacterial filament) Tbd_1865 PF14245 Type IV pilin PilA Tbd_1865 PF07963 Prokaryotic N-terminal methylation motif Tbd_1866 PF01266 FAD dependent oxidoreductase Tbd_1868 PF13439 Glycosyltransferase Family 4 Tbd_1868 PF00534 Glycosyl transferases group 1 Tbd_1871 PF02719 Polysaccharide biosynthesis protein Tbd_1872 PF00953 Glycosyl transferase family 4 Tbd_1873 PF01370 NAD dependent epimerase/dehydratase family Tbd_1874 PF00535 Glycosyl transferase family 2 Tbd_1875 PF01501 Glycosyl transferase family 8 Tbd_1875 PF00535 Glycosyl transferase family 2 Tbd_1876 PF00205 Thiamine pyrophosphate enzyme, central domain Tbd_1876 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tbd_1876 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_1877 PF00005 ABC transporter Tbd_1878 PF01061 ABC-2 type transporter Tbd_1879 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tbd_1880 PF16363 GDP-mannose 4,6 dehydratase Tbd_1881 PF00483 Nucleotidyl transferase Tbd_1885 PF01761 3-dehydroquinate synthase Tbd_1890 PF01634 ATP phosphoribosyltransferase Tbd_1891 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tbd_1892 PF01722 BolA-like protein Tbd_1893 PF01061 ABC-2 type transporter Tbd_1894 PF00005 ABC transporter Tbd_1898 PF02470 MlaD protein Tbd_1899 PF02405 Permease MlaE Tbd_1900 PF00005 ABC transporter Tbd_1902 PF09190 DALR domain Tbd_1902 PF01406 tRNA synthetases class I (C) catalytic domain Tbd_1904 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tbd_1905 PF00149 Calcineurin-like phosphoesterase Tbd_1907 PF01053 Cys/Met metabolism PLP-dependent enzyme Tbd_1908 PF00156 Phosphoribosyl transferase domain Tbd_1911 PF02875 Mur ligase family, glutamate ligase domain Tbd_1911 PF08245 Mur ligase middle domain Tbd_1912 PF17848 Acetyl-coA carboxylase zinc finger domain Tbd_1912 PF01039 Carboxyl transferase domain Tbd_1913 PF00290 Tryptophan synthase alpha chain Tbd_1914 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_1915 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Tbd_1916 PF01416 tRNA pseudouridine synthase Tbd_1919 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tbd_1919 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tbd_1920 PF00180 Isocitrate/isopropylmalate dehydrogenase Tbd_1921 PF00694 Aconitase C-terminal domain Tbd_1922 PF00330 Aconitase family (aconitate hydratase) Tbd_1923 PF12832 MFS_1 like family Tbd_1924 PF04304 Protein of unknown function (DUF454) Tbd_1925 PF01613 Flavin reductase like domain Tbd_1927 PF07694 5TMR of 5TMR-LYT Tbd_1927 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1928 PF10609 NUBPL iron-transfer P-loop NTPase Tbd_1933 PF13460 NAD(P)H-binding Tbd_1933 PF11066 Protein of unknown function (DUF2867) Tbd_1938 PF00563 EAL domain Tbd_1938 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1938 PF08448 PAS fold Tbd_1941 PF02560 Cyanate lyase C-terminal domain Tbd_1942 PF03793 PASTA domain Tbd_1942 PF00069 Protein kinase domain Tbd_1943 PF01226 Formate/nitrite transporter Tbd_1945 PF09371 Tex-like protein N-terminal domain Tbd_1945 PF00575 S1 RNA binding domain Tbd_1945 PF17674 HHH domain Tbd_1945 PF16921 Tex protein YqgF-like domain Tbd_1948 PF00970 Oxidoreductase FAD-binding domain Tbd_1948 PF00175 Oxidoreductase NAD-binding domain Tbd_1948 PF00042 Globin Tbd_1951 PF04055 Radical SAM superfamily Tbd_1953 PF00990 Diguanylate cyclase, GGDEF domain Tbd_1953 PF08448 PAS fold Tbd_1955 PF00485 Phosphoribulokinase / Uridine kinase family Tbd_1960 PF04264 YceI-like domain Tbd_1972 PF00155 Aminotransferase class I and II Tbd_1972 PF00392 Bacterial regulatory proteins, gntR family Tbd_1975 PF00268 Ribonucleotide reductase, small chain Tbd_1976 PF03477 ATP cone domain Tbd_1976 PF02867 Ribonucleotide reductase, barrel domain Tbd_1976 PF00317 Ribonucleotide reductase, all-alpha domain Tbd_1977 PF01842 ACT domain Tbd_1977 PF00551 Formyl transferase Tbd_1979 PF03358 NADPH-dependent FMN reductase Tbd_1981 PF00581 Rhodanese-like domain Tbd_1982 PF01206 Sulfurtransferase TusA Tbd_1982 PF11823 Protein of unknown function (DUF3343) Tbd_1984 PF00440 Bacterial regulatory proteins, tetR family Tbd_1984 PF08361 MAATS-type transcriptional repressor, C-terminal region Tbd_1985 PF00892 EamA-like transporter family Tbd_1986 PF08502 LeuA allosteric (dimerisation) domain Tbd_1986 PF00682 HMGL-like Tbd_1987 PF01066 CDP-alcohol phosphatidyltransferase Tbd_1988 PF02666 Phosphatidylserine decarboxylase Tbd_1989 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Tbd_1989 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tbd_1990 PF10369 Small subunit of acetolactate synthase Tbd_1991 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tbd_1991 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_1991 PF00205 Thiamine pyrophosphate enzyme, central domain Tbd_1998 PF01565 FAD binding domain Tbd_1998 PF02913 FAD linked oxidases, C-terminal domain Tbd_1999 PF00684 DnaJ central domain Tbd_1999 PF01556 DnaJ C terminal domain Tbd_1999 PF00226 DnaJ domain Tbd_2005 PF13356 Arm DNA-binding domain Tbd_2005 PF00589 Phage integrase family Tbd_2006 PF00578 AhpC/TSA family Tbd_2007 PF01066 CDP-alcohol phosphatidyltransferase Tbd_2008 PF00271 Helicase conserved C-terminal domain Tbd_2008 PF00270 DEAD/DEAH box helicase Tbd_2008 PF11898 Domain of unknown function (DUF3418) Tbd_2008 PF04408 Helicase associated domain (HA2) Tbd_2008 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Tbd_2014 PF02082 Transcriptional regulator Tbd_2015 PF02508 Rnf-Nqr subunit, membrane protein Tbd_2016 PF04060 Putative Fe-S cluster Tbd_2017 PF13375 RnfC Barrel sandwich hybrid domain Tbd_2017 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tbd_2017 PF12838 4Fe-4S dicluster domain Tbd_2018 PF03116 NQR2, RnfD, RnfE family Tbd_2019 PF04205 FMN-binding domain Tbd_2020 PF02508 Rnf-Nqr subunit, membrane protein Tbd_2021 PF00730 HhH-GPD superfamily base excision DNA repair protein Tbd_2021 PF00633 Helix-hairpin-helix motif Tbd_2021 PF10576 Iron-sulfur binding domain of endonuclease III Tbd_2023 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2023 PF00072 Response regulator receiver domain Tbd_2024 PF13380 CoA binding domain Tbd_2024 PF13607 Succinyl-CoA ligase like flavodoxin domain Tbd_2024 PF00583 Acetyltransferase (GNAT) family Tbd_2025 PF00850 Histone deacetylase domain Tbd_2026 PF00034 Cytochrome c Tbd_2027 PF00034 Cytochrome c Tbd_2028 PF00916 Sulfate permease family Tbd_2028 PF01740 STAS domain Tbd_2029 PF00565 Staphylococcal nuclease homologue Tbd_2030 PF02463 RecF/RecN/SMC N terminal domain Tbd_2030 PF13476 AAA domain Tbd_2031 PF01513 ATP-NAD kinase Tbd_2032 PF01628 HrcA protein C terminal domain Tbd_2033 PF00762 Ferrochelatase Tbd_2035 PF10518 TAT (twin-arginine translocation) pathway signal sequence Tbd_2035 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Tbd_2035 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2036 PF00582 Universal stress protein family Tbd_2039 PF00186 Dihydrofolate reductase Tbd_2040 PF00303 Thymidylate synthase Tbd_2042 PF04376 Arginine-tRNA-protein transferase, N terminus Tbd_2042 PF04377 Arginine-tRNA-protein transferase, C terminus Tbd_2043 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Tbd_2044 PF00403 Heavy-metal-associated domain Tbd_2047 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tbd_2048 PF01032 FecCD transport family Tbd_2049 PF00005 ABC transporter Tbd_2050 PF12627 Probable RNA and SrmB- binding site of polymerase A Tbd_2050 PF12626 Polymerase A arginine-rich C-terminus Tbd_2050 PF01743 Poly A polymerase head domain Tbd_2051 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tbd_2052 PF01712 Deoxynucleoside kinase Tbd_2053 PF02548 Ketopantoate hydroxymethyltransferase Tbd_2054 PF02569 Pantoate-beta-alanine ligase Tbd_2055 PF02261 Aspartate decarboxylase Tbd_2056 PF00343 Carbohydrate phosphorylase Tbd_2057 PF00534 Glycosyl transferases group 1 Tbd_2057 PF08323 Starch synthase catalytic domain Tbd_2058 PF02806 Alpha amylase, C-terminal all-beta domain Tbd_2058 PF00128 Alpha amylase, catalytic domain Tbd_2058 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tbd_2059 PF02446 4-alpha-glucanotransferase Tbd_2061 PF00483 Nucleotidyl transferase Tbd_2062 PF02685 Glucokinase Tbd_2063 PF00342 Phosphoglucose isomerase Tbd_2064 PF01370 NAD dependent epimerase/dehydratase family Tbd_2065 PF02705 K+ potassium transporter Tbd_2068 PF00772 DnaB-like helicase N terminal domain Tbd_2068 PF03796 DnaB-like helicase C terminal domain Tbd_2069 PF03354 Phage Terminase Tbd_2073 PF13356 Arm DNA-binding domain Tbd_2073 PF00589 Phage integrase family Tbd_2074 PF02547 Queuosine biosynthesis protein Tbd_2075 PF01702 Queuine tRNA-ribosyltransferase Tbd_2077 PF01435 Peptidase family M48 Tbd_2078 PF02699 Preprotein translocase subunit Tbd_2079 PF13721 SecD export protein N-terminal TM region Tbd_2079 PF02355 Protein export membrane protein Tbd_2079 PF07549 SecD/SecF GG Motif Tbd_2080 PF07549 SecD/SecF GG Motif Tbd_2080 PF02355 Protein export membrane protein Tbd_2081 PF09335 SNARE associated Golgi protein Tbd_2083 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Tbd_2084 PF02565 Recombination protein O C terminal Tbd_2084 PF11967 Recombination protein O N terminal Tbd_2085 PF01926 50S ribosome-binding GTPase Tbd_2085 PF07650 KH domain Tbd_2086 PF00035 Double-stranded RNA binding motif Tbd_2086 PF14622 Ribonuclease-III-like Tbd_2088 PF10502 Signal peptidase, peptidase S26 Tbd_2089 PF00009 Elongation factor Tu GTP binding domain Tbd_2089 PF03144 Elongation factor Tu domain 2 Tbd_2089 PF00679 Elongation factor G C-terminus Tbd_2089 PF06421 GTP-binding protein LepA C-terminus Tbd_2091 PF13180 PDZ domain Tbd_2095 PF08281 Sigma-70, region 4 Tbd_2095 PF04542 Sigma-70 region 2 Tbd_2096 PF00890 FAD binding domain Tbd_2096 PF02910 Fumarate reductase flavoprotein C-term Tbd_2098 PF01571 Aminomethyltransferase folate-binding domain Tbd_2100 PF01168 Alanine racemase, N-terminal domain Tbd_2100 PF00842 Alanine racemase, C-terminal domain Tbd_2101 PF00772 DnaB-like helicase N terminal domain Tbd_2101 PF03796 DnaB-like helicase C terminal domain Tbd_2102 PF03948 Ribosomal protein L9, C-terminal domain Tbd_2102 PF01281 Ribosomal protein L9, N-terminal domain Tbd_2103 PF01084 Ribosomal protein S18 Tbd_2105 PF01250 Ribosomal protein S6 Tbd_2106 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Tbd_2106 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tbd_2106 PF01276 Orn/Lys/Arg decarboxylase, major domain Tbd_2107 PF00692 dUTPase Tbd_2108 PF10609 NUBPL iron-transfer P-loop NTPase Tbd_2110 PF00293 NUDIX domain Tbd_2112 PF04073 Aminoacyl-tRNA editing domain Tbd_2112 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tbd_2112 PF03129 Anticodon binding domain Tbd_2113 PF01464 Transglycosylase SLT domain Tbd_2113 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Tbd_2118 PF00578 AhpC/TSA family Tbd_2119 PF00206 Lyase Tbd_2119 PF10415 Fumarase C C-terminus Tbd_2120 PF01926 50S ribosome-binding GTPase Tbd_2121 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Tbd_2122 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Tbd_2122 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Tbd_2123 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tbd_2123 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tbd_2124 PF01914 MarC family integral membrane protein Tbd_2125 PF02390 Putative methyltransferase Tbd_2126 PF05690 Thiazole biosynthesis protein ThiG Tbd_2127 PF02597 ThiS family Tbd_2127 PF05690 Thiazole biosynthesis protein ThiG Tbd_2130 PF14815 NUDIX domain Tbd_2130 PF00730 HhH-GPD superfamily base excision DNA repair protein Tbd_2130 PF00633 Helix-hairpin-helix motif Tbd_2130 PF10576 Iron-sulfur binding domain of endonuclease III Tbd_2133 PF00445 Ribonuclease T2 family Tbd_2134 PF01063 Amino-transferase class IV Tbd_2137 PF00561 alpha/beta hydrolase fold Tbd_2138 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tbd_2138 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tbd_2138 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tbd_2138 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tbd_2139 PF00534 Glycosyl transferases group 1 Tbd_2139 PF13439 Glycosyltransferase Family 4 Tbd_2140 PF01544 CorA-like Mg2+ transporter protein Tbd_2143 PF00994 Probable molybdopterin binding domain Tbd_2147 PF04751 Protein of unknown function (DUF615) Tbd_2148 PF01523 Putative modulator of DNA gyrase Tbd_2149 PF13472 GDSL-like Lipase/Acylhydrolase family Tbd_2151 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Tbd_2152 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_2153 PF11842 Domain of unknown function (DUF3362) Tbd_2153 PF04055 Radical SAM superfamily Tbd_2153 PF08497 Radical SAM N-terminal Tbd_2157 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_2157 PF00034 Cytochrome c Tbd_2159 PF00563 EAL domain Tbd_2159 PF08668 HDOD domain Tbd_2162 PF03848 Tellurite resistance protein TehB Tbd_2163 PF03232 Ubiquinone biosynthesis protein COQ7 Tbd_2164 PF03480 Bacterial extracellular solute-binding protein, family 7 Tbd_2165 PF00464 Serine hydroxymethyltransferase Tbd_2166 PF03477 ATP cone domain Tbd_2167 PF00194 Eukaryotic-type carbonic anhydrase Tbd_2168 PF01872 RibD C-terminal domain Tbd_2168 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tbd_2171 PF03477 ATP cone domain Tbd_2171 PF13597 Anaerobic ribonucleoside-triphosphate reductase Tbd_2184 PF01242 6-pyruvoyl tetrahydropterin synthase Tbd_2187 PF04055 Radical SAM superfamily Tbd_2187 PF16199 Radical_SAM C-terminal domain Tbd_2188 PF03060 Nitronate monooxygenase Tbd_2189 PF00677 Lumazine binding domain Tbd_2190 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tbd_2190 PF00925 GTP cyclohydrolase II Tbd_2191 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tbd_2192 PF01029 NusB family Tbd_2193 PF00586 AIR synthase related protein, N-terminal domain Tbd_2193 PF02769 AIR synthase related protein, C-terminal domain Tbd_2194 PF04608 Phosphatidylglycerophosphatase A Tbd_2195 PF02464 Competence-damaged protein Tbd_2197 PF00154 recA bacterial DNA recombination protein Tbd_2198 PF02631 RecX family Tbd_2200 PF07963 Prokaryotic N-terminal methylation motif Tbd_2200 PF00114 Pilin (bacterial filament) Tbd_2201 PF04143 Sulphur transport Tbd_2202 PF06508 Queuosine biosynthesis protein QueC Tbd_2203 PF04055 Radical SAM superfamily Tbd_2204 PF13525 Outer membrane lipoprotein Tbd_2204 PF16331 TolA binding protein trimerisation Tbd_2205 PF00691 OmpA family Tbd_2206 PF04052 TolB amino-terminal domain Tbd_2206 PF07676 WD40-like Beta Propeller Repeat Tbd_2208 PF02472 Biopolymer transport protein ExbD/TolR Tbd_2209 PF01618 MotA/TolQ/ExbB proton channel family Tbd_2210 PF03061 Thioesterase superfamily Tbd_2211 PF05496 Holliday junction DNA helicase RuvB P-loop domain Tbd_2211 PF17864 RuvB AAA lid domain Tbd_2211 PF05491 RuvB C-terminal winged helix domain Tbd_2212 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2212 PF00072 Response regulator receiver domain Tbd_2213 PF07499 RuvA, C-terminal domain Tbd_2213 PF01330 RuvA N terminal domain Tbd_2214 PF02075 Crossover junction endodeoxyribonuclease RuvC Tbd_2215 PF01709 Transcriptional regulator Tbd_2216 PF00480 ROK family Tbd_2218 PF01145 SPFH domain / Band 7 family Tbd_2218 PF15975 Flotillin Tbd_2219 PF07290 Protein of unknown function (DUF1449) Tbd_2220 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2221 PF05872 Bacterial protein of unknown function (DUF853) Tbd_2222 PF00218 Indole-3-glycerol phosphate synthase Tbd_2223 PF00591 Glycosyl transferase family, a/b domain Tbd_2223 PF02885 Glycosyl transferase family, helical bundle domain Tbd_2224 PF00117 Glutamine amidotransferase class-I Tbd_2225 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2227 PF02954 Bacterial regulatory protein, Fis family Tbd_2227 PF00158 Sigma-54 interaction domain Tbd_2227 PF00072 Response regulator receiver domain Tbd_2228 PF04715 Anthranilate synthase component I, N terminal region Tbd_2228 PF00425 chorismate binding enzyme Tbd_2229 PF13419 Haloacid dehalogenase-like hydrolase Tbd_2230 PF00834 Ribulose-phosphate 3 epimerase family Tbd_2231 PF04379 ApaG domain Tbd_2232 PF06725 3D domain Tbd_2232 PF03562 MltA specific insert domain Tbd_2235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2235 PF07730 Histidine kinase Tbd_2236 PF00072 Response regulator receiver domain Tbd_2236 PF04397 LytTr DNA-binding domain Tbd_2237 PF00072 Response regulator receiver domain Tbd_2237 PF00196 Bacterial regulatory proteins, luxR family Tbd_2239 PF07043 Protein of unknown function (DUF1328) Tbd_2243 PF13396 Phospholipase_D-nuclease N-terminal Tbd_2243 PF13091 PLD-like domain Tbd_2246 PF02735 Ku70/Ku80 beta-barrel domain Tbd_2247 PF13298 DNA polymerase Ligase (LigD) Tbd_2247 PF01068 ATP dependent DNA ligase domain Tbd_2247 PF04679 ATP dependent DNA ligase C terminal region Tbd_2250 PF05532 CsbD-like Tbd_2253 PF01594 AI-2E family transporter Tbd_2254 PF05170 AsmA family Tbd_2256 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tbd_2256 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tbd_2258 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tbd_2258 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tbd_2266 PF00403 Heavy-metal-associated domain Tbd_2267 PF09278 MerR, DNA binding Tbd_2267 PF00376 MerR family regulatory protein Tbd_2268 PF03544 Gram-negative bacterial TonB protein C-terminal Tbd_2271 PF03861 ANTAR domain Tbd_2271 PF08376 Nitrate and nitrite sensing Tbd_2273 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_2274 PF00005 ABC transporter Tbd_2276 PF01555 DNA methylase Tbd_2276 PF18273 Type III R-M EcoP15I C-terminal domain Tbd_2279 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2279 PF00360 Phytochrome region Tbd_2279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2279 PF08446 PAS fold Tbd_2279 PF01590 GAF domain Tbd_2280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_2282 PF00890 FAD binding domain Tbd_2283 PF13187 4Fe-4S dicluster domain Tbd_2283 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Tbd_2285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2285 PF03466 LysR substrate binding domain Tbd_2286 PF08267 Cobalamin-independent synthase, N-terminal domain Tbd_2286 PF01717 Cobalamin-independent synthase, Catalytic domain Tbd_2288 PF12706 Beta-lactamase superfamily domain Tbd_2290 PF07969 Amidohydrolase family Tbd_2291 PF00005 ABC transporter Tbd_2292 PF00005 ABC transporter Tbd_2293 PF06007 Phosphonate metabolism protein PhnJ Tbd_2294 PF05861 Bacterial phosphonate metabolism protein (PhnI) Tbd_2297 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_2298 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_2299 PF00005 ABC transporter Tbd_2301 PF07702 UTRA domain Tbd_2301 PF00392 Bacterial regulatory proteins, gntR family Tbd_2302 PF03775 Septum formation inhibitor MinC, C-terminal domain Tbd_2302 PF05209 Septum formation inhibitor MinC, N-terminal domain Tbd_2303 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_2304 PF03776 Septum formation topological specificity factor MinE Tbd_2308 PF00355 Rieske [2Fe-2S] domain Tbd_2309 PF18267 Rubredoxin NAD+ reductase C-terminal domain Tbd_2309 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2309 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_2309 PF04324 BFD-like [2Fe-2S] binding domain Tbd_2309 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_2310 PF04324 BFD-like [2Fe-2S] binding domain Tbd_2310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Tbd_2310 PF01568 Molydopterin dinucleotide binding domain Tbd_2310 PF00384 Molybdopterin oxidoreductase Tbd_2311 PF00199 Catalase Tbd_2311 PF18011 C-terminal domain found in long catalases Tbd_2311 PF06628 Catalase-related immune-responsive Tbd_2312 PF00011 Hsp20/alpha crystallin family Tbd_2313 PF00571 CBS domain Tbd_2313 PF03471 Transporter associated domain Tbd_2313 PF01595 Cyclin M transmembrane N-terminal domain Tbd_2314 PF01242 6-pyruvoyl tetrahydropterin synthase Tbd_2315 PF18113 Rubredoxin binding C-terminal domain Tbd_2315 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2316 PF00301 Rubredoxin Tbd_2317 PF02915 Rubrerythrin Tbd_2318 PF09335 SNARE associated Golgi protein Tbd_2319 PF00873 AcrB/AcrD/AcrF family Tbd_2320 PF13533 Biotin-lipoyl like Tbd_2323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2323 PF03466 LysR substrate binding domain Tbd_2324 PF02535 ZIP Zinc transporter Tbd_2327 PF04358 DsrC like protein Tbd_2328 PF03466 LysR substrate binding domain Tbd_2328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2329 PF00175 Oxidoreductase NAD-binding domain Tbd_2329 PF00970 Oxidoreductase FAD-binding domain Tbd_2329 PF00042 Globin Tbd_2331 PF10411 Disulfide bond isomerase protein N-terminus Tbd_2331 PF13098 Thioredoxin-like domain Tbd_2332 PF01494 FAD binding domain Tbd_2333 PF01494 FAD binding domain Tbd_2334 PF00557 Metallopeptidase family M24 Tbd_2334 PF05195 Aminopeptidase P, N-terminal domain Tbd_2335 PF00483 Nucleotidyl transferase Tbd_2336 PF01636 Phosphotransferase enzyme family Tbd_2337 PF04453 LPS transport system D Tbd_2338 PF09312 SurA N-terminal domain Tbd_2338 PF00639 PPIC-type PPIASE domain Tbd_2339 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Tbd_2340 PF00398 Ribosomal RNA adenine dimethylase Tbd_2341 PF00691 OmpA family Tbd_2341 PF05736 OprF membrane domain Tbd_2343 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Tbd_2345 PF13193 AMP-binding enzyme C-terminal domain Tbd_2345 PF00501 AMP-binding enzyme Tbd_2345 PF01553 Acyltransferase Tbd_2347 PF05746 DALR anticodon binding domain Tbd_2347 PF02092 Glycyl-tRNA synthetase beta subunit Tbd_2348 PF02091 Glycyl-tRNA synthetase alpha subunit Tbd_2349 PF00174 Oxidoreductase molybdopterin binding domain Tbd_2353 PF00672 HAMP domain Tbd_2353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2353 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2354 PF00486 Transcriptional regulatory protein, C terminal Tbd_2354 PF00072 Response regulator receiver domain Tbd_2358 PF00970 Oxidoreductase FAD-binding domain Tbd_2358 PF00175 Oxidoreductase NAD-binding domain Tbd_2359 PF01139 tRNA-splicing ligase RtcB Tbd_2360 PF12627 Probable RNA and SrmB- binding site of polymerase A Tbd_2360 PF01743 Poly A polymerase head domain Tbd_2360 PF01966 HD domain Tbd_2361 PF01370 NAD dependent epimerase/dehydratase family Tbd_2362 PF14718 Soluble lytic murein transglycosylase L domain Tbd_2362 PF01464 Transglycosylase SLT domain Tbd_2363 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_2363 PF00585 C-terminal regulatory domain of Threonine dehydratase Tbd_2364 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Tbd_2365 PF03884 DNA gyrase inhibitor YacG Tbd_2366 PF07072 Cell division protein Tbd_2367 PF01121 Dephospho-CoA kinase Tbd_2368 PF01478 Type IV leader peptidase family Tbd_2368 PF06750 Bacterial Peptidase A24 N-terminal domain Tbd_2369 PF00482 Type II secretion system (T2SS), protein F Tbd_2370 PF00437 Type II/IV secretion system protein Tbd_2370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_2371 PF00571 CBS domain Tbd_2371 PF03471 Transporter associated domain Tbd_2371 PF01595 Cyclin M transmembrane N-terminal domain Tbd_2372 PF01578 Cytochrome C assembly protein Tbd_2373 PF00448 SRP54-type protein, GTPase domain Tbd_2373 PF02881 SRP54-type protein, helical bundle domain Tbd_2373 PF02978 Signal peptide binding domain Tbd_2374 PF05239 PRC-barrel domain Tbd_2374 PF01782 RimM N-terminal domain Tbd_2375 PF01746 tRNA (Guanine-1)-methyltransferase Tbd_2376 PF01245 Ribosomal protein L19 Tbd_2377 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Tbd_2377 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tbd_2378 PF00589 Phage integrase family Tbd_2378 PF02899 Phage integrase, N-terminal SAM-like domain Tbd_2382 PF02660 Glycerol-3-phosphate acyltransferase Tbd_2384 PF00814 Glycoprotease family Tbd_2385 PF01165 Ribosomal protein S21 Tbd_2387 PF08275 DNA primase catalytic core, N-terminal domain Tbd_2387 PF08278 DNA primase DnaG DnaB-binding Tbd_2387 PF10410 DnaB-helicase binding domain of primase Tbd_2387 PF01807 CHC2 zinc finger Tbd_2388 PF04545 Sigma-70, region 4 Tbd_2388 PF04546 Sigma-70, non-essential region Tbd_2388 PF04539 Sigma-70 region 3 Tbd_2388 PF00140 Sigma-70 factor, region 1.2 Tbd_2388 PF03979 Sigma-70 factor, region 1.1 Tbd_2388 PF04542 Sigma-70 region 2 Tbd_2389 PF00440 Bacterial regulatory proteins, tetR family Tbd_2390 PF00899 ThiF family Tbd_2392 PF13180 PDZ domain Tbd_2392 PF03572 Peptidase family S41 Tbd_2393 PF01551 Peptidase family M23 Tbd_2394 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Tbd_2394 PF01676 Metalloenzyme superfamily Tbd_2397 PF00873 AcrB/AcrD/AcrF family Tbd_2399 PF00581 Rhodanese-like domain Tbd_2400 PF00462 Glutaredoxin Tbd_2401 PF00085 Thioredoxin Tbd_2402 PF02556 Preprotein translocase subunit SecB Tbd_2404 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tbd_2404 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tbd_2406 PF08447 PAS fold Tbd_2406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_2407 PF00588 SpoU rRNA Methylase family Tbd_2409 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Tbd_2409 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Tbd_2411 PF02424 ApbE family Tbd_2413 PF00381 PTS HPr component phosphorylation site Tbd_2414 PF05524 PEP-utilising enzyme, N-terminal Tbd_2414 PF00391 PEP-utilising enzyme, mobile domain Tbd_2414 PF02896 PEP-utilising enzyme, TIM barrel domain Tbd_2415 PF00350 Dynamin family Tbd_2416 PF02325 YGGT family Tbd_2417 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tbd_2417 PF03807 NADP oxidoreductase coenzyme F420-dependent Tbd_2418 PF01168 Alanine racemase, N-terminal domain Tbd_2419 PF00437 Type II/IV secretion system protein Tbd_2420 PF00437 Type II/IV secretion system protein Tbd_2424 PF01170 Putative RNA methylase family UPF0020 Tbd_2424 PF02926 THUMP domain Tbd_2427 PF04102 SlyX Tbd_2428 PF03707 Bacterial signalling protein N terminal repeat Tbd_2428 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2428 PF00563 EAL domain Tbd_2430 PF12848 ABC transporter Tbd_2430 PF00005 ABC transporter Tbd_2431 PF00578 AhpC/TSA family Tbd_2431 PF02683 Cytochrome C biogenesis protein transmembrane region Tbd_2431 PF17991 Thioredoxin like C-terminal domain Tbd_2432 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_2433 PF01432 Peptidase family M3 Tbd_2437 PF10150 Ribonuclease E/G family Tbd_2437 PF00575 S1 RNA binding domain Tbd_2438 PF02545 Maf-like protein Tbd_2439 PF02590 Predicted SPOUT methyltransferase Tbd_2441 PF01467 Cytidylyltransferase-like Tbd_2442 PF00171 Aldehyde dehydrogenase family Tbd_2445 PF08264 Anticodon-binding domain of tRNA Tbd_2445 PF00133 tRNA synthetases class I (I, L, M and V) Tbd_2445 PF13603 Leucyl-tRNA synthetase, Domain 2 Tbd_2445 PF09334 tRNA synthetases class I (M) Tbd_2447 PF00485 Phosphoribulokinase / Uridine kinase family Tbd_2449 PF13361 UvrD-like helicase C-terminal domain Tbd_2449 PF00580 UvrD/REP helicase N-terminal domain Tbd_2452 PF03641 Possible lysine decarboxylase Tbd_2453 PF00476 DNA polymerase family A Tbd_2453 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tbd_2453 PF01612 3'-5' exonuclease Tbd_2453 PF01367 5'-3' exonuclease, C-terminal SAM fold Tbd_2454 PF00691 OmpA family Tbd_2454 PF05736 OprF membrane domain Tbd_2455 PF01741 Large-conductance mechanosensitive channel, MscL Tbd_2456 PF01207 Dihydrouridine synthase (Dus) Tbd_2457 PF02954 Bacterial regulatory protein, Fis family Tbd_2458 PF01808 AICARFT/IMPCHase bienzyme Tbd_2458 PF02142 MGS-like domain Tbd_2459 PF02844 Phosphoribosylglycinamide synthetase, N domain Tbd_2459 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tbd_2459 PF02843 Phosphoribosylglycinamide synthetase, C domain Tbd_2460 PF01300 Telomere recombination Tbd_2461 PF01218 Coproporphyrinogen III oxidase Tbd_2463 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Tbd_2463 PF07730 Histidine kinase Tbd_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2463 PF00672 HAMP domain Tbd_2464 PF00196 Bacterial regulatory proteins, luxR family Tbd_2464 PF00072 Response regulator receiver domain Tbd_2468 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_2468 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Tbd_2468 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tbd_2468 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tbd_2468 PF10371 Domain of unknown function Tbd_2469 PF00999 Sodium/hydrogen exchanger family Tbd_2469 PF02254 TrkA-N domain Tbd_2471 PF14824 Sirohaem biosynthesis protein central Tbd_2471 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tbd_2471 PF10414 Sirohaem synthase dimerisation region Tbd_2473 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tbd_2473 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_2475 PF13247 4Fe-4S dicluster domain Tbd_2477 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tbd_2477 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tbd_2477 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2480 PF04358 DsrC like protein Tbd_2481 PF04077 DsrH like protein Tbd_2482 PF02635 DsrE/DsrF-like family Tbd_2483 PF02635 DsrE/DsrF-like family Tbd_2484 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_2484 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_2485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_2485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_2488 PF04358 DsrC like protein Tbd_2489 PF00581 Rhodanese-like domain Tbd_2492 PF01488 Shikimate / quinate 5-dehydrogenase Tbd_2492 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Tbd_2492 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Tbd_2493 PF00472 RF-1 domain Tbd_2493 PF03462 PCRF domain Tbd_2494 PF17827 PrmC N-terminal domain Tbd_2494 PF05175 Methyltransferase small domain Tbd_2499 PF00462 Glutaredoxin Tbd_2500 PF00158 Sigma-54 interaction domain Tbd_2500 PF02954 Bacterial regulatory protein, Fis family Tbd_2500 PF00072 Response regulator receiver domain Tbd_2501 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2501 PF00989 PAS fold Tbd_2504 PF08501 Shikimate dehydrogenase substrate binding domain Tbd_2504 PF01488 Shikimate / quinate 5-dehydrogenase Tbd_2504 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Tbd_2505 PF00912 Transglycosylase Tbd_2506 PF00571 CBS domain Tbd_2506 PF03448 MgtE intracellular N domain Tbd_2506 PF01769 Divalent cation transporter Tbd_2507 PF00005 ABC transporter Tbd_2507 PF00664 ABC transporter transmembrane region Tbd_2508 PF01171 PP-loop family Tbd_2509 PF00266 Aminotransferase class-V Tbd_2517 PF02219 Methylenetetrahydrofolate reductase Tbd_2519 PF05221 S-adenosyl-L-homocysteine hydrolase Tbd_2519 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Tbd_2520 PF01699 Sodium/calcium exchanger protein Tbd_2521 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tbd_2521 PF02772 S-adenosylmethionine synthetase, central domain Tbd_2521 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tbd_2523 PF03279 Bacterial lipid A biosynthesis acyltransferase Tbd_2525 PF13380 CoA binding domain Tbd_2526 PF01678 Diaminopimelate epimerase Tbd_2528 PF02899 Phage integrase, N-terminal SAM-like domain Tbd_2528 PF00589 Phage integrase family Tbd_2529 PF03976 Polyphosphate kinase 2 (PPK2) Tbd_2531 PF00873 AcrB/AcrD/AcrF family Tbd_2532 PF13533 Biotin-lipoyl like Tbd_2533 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tbd_2534 PF07683 Cobalamin synthesis protein cobW C-terminal domain Tbd_2534 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tbd_2535 PF01809 Putative membrane protein insertion efficiency factor Tbd_2539 PF00950 ABC 3 transport family Tbd_2541 PF00227 Proteasome subunit Tbd_2542 PF07724 AAA domain (Cdc48 subfamily) Tbd_2542 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_2542 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_2543 PF03350 Uncharacterized protein family, UPF0114 Tbd_2548 PF01584 CheW-like domain Tbd_2548 PF01627 Hpt domain Tbd_2548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2548 PF00072 Response regulator receiver domain Tbd_2549 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Tbd_2549 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_2551 PF00072 Response regulator receiver domain Tbd_2552 PF00072 Response regulator receiver domain Tbd_2554 PF00301 Rubredoxin Tbd_2555 PF08543 Phosphomethylpyrimidine kinase Tbd_2556 PF02581 Thiamine monophosphate synthase Tbd_2557 PF00202 Aminotransferase class-III Tbd_2559 PF02683 Cytochrome C biogenesis protein transmembrane region Tbd_2559 PF11412 Disulphide bond corrector protein DsbC Tbd_2560 PF03091 CutA1 divalent ion tolerance protein Tbd_2561 PF04186 FxsA cytoplasmic membrane protein Tbd_2563 PF00175 Oxidoreductase NAD-binding domain Tbd_2563 PF00111 2Fe-2S iron-sulfur cluster binding domain Tbd_2563 PF00970 Oxidoreductase FAD-binding domain Tbd_2566 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Tbd_2567 PF02602 Uroporphyrinogen-III synthase HemD Tbd_2568 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Tbd_2568 PF03900 Porphobilinogen deaminase, C-terminal domain Tbd_2570 PF00072 Response regulator receiver domain Tbd_2570 PF00196 Bacterial regulatory proteins, luxR family Tbd_2571 PF00672 HAMP domain Tbd_2571 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2571 PF00072 Response regulator receiver domain Tbd_2571 PF01627 Hpt domain Tbd_2571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2572 PF02875 Mur ligase family, glutamate ligase domain Tbd_2572 PF08245 Mur ligase middle domain Tbd_2572 PF01225 Mur ligase family, catalytic domain Tbd_2574 PF05728 Uncharacterised protein family (UPF0227) Tbd_2575 PF00773 RNB domain Tbd_2575 PF17876 Cold shock domain Tbd_2575 PF08461 Ribonuclease R winged-helix domain Tbd_2575 PF08206 Ribonuclease B OB domain Tbd_2575 PF00575 S1 RNA binding domain Tbd_2577 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Tbd_2578 PF03707 Bacterial signalling protein N terminal repeat Tbd_2578 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2578 PF00563 EAL domain Tbd_2579 PF02622 Uncharacterized ACR, COG1678 Tbd_2580 PF03652 Holliday junction resolvase Tbd_2581 PF00156 Phosphoribosyl transferase domain Tbd_2582 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tbd_2582 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tbd_2583 PF01979 Amidohydrolase family Tbd_2584 PF00795 Carbon-nitrogen hydrolase Tbd_2585 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2585 PF00563 EAL domain Tbd_2585 PF03707 Bacterial signalling protein N terminal repeat Tbd_2586 PF00692 dUTPase Tbd_2587 PF02441 Flavoprotein Tbd_2587 PF04127 DNA / pantothenate metabolism flavoprotein Tbd_2588 PF04002 RadC-like JAB domain Tbd_2589 PF00830 Ribosomal L28 family Tbd_2590 PF00471 Ribosomal protein L33 Tbd_2591 PF00593 TonB dependent receptor Tbd_2591 PF07715 TonB-dependent Receptor Plug Domain Tbd_2593 PF00027 Cyclic nucleotide-binding domain Tbd_2593 PF00325 Bacterial regulatory proteins, crp family Tbd_2595 PF12795 Mechanosensitive ion channel porin domain Tbd_2595 PF12794 Mechanosensitive ion channel inner membrane domain 1 Tbd_2595 PF00924 Mechanosensitive ion channel Tbd_2596 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tbd_2597 PF00501 AMP-binding enzyme Tbd_2598 PF01029 NusB family Tbd_2598 PF01189 16S rRNA methyltransferase RsmB/F Tbd_2601 PF01594 AI-2E family transporter Tbd_2602 PF03741 Integral membrane protein TerC family Tbd_2603 PF01435 Peptidase family M48 Tbd_2604 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2604 PF03466 LysR substrate binding domain Tbd_2606 PF00085 Thioredoxin Tbd_2609 PF01740 STAS domain Tbd_2609 PF00916 Sulfate permease family Tbd_2610 PF08521 Two-component sensor kinase N-terminal Tbd_2610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2610 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2611 PF00072 Response regulator receiver domain Tbd_2611 PF00486 Transcriptional regulatory protein, C terminal Tbd_2613 PF01925 Sulfite exporter TauE/SafE Tbd_2614 PF00582 Universal stress protein family Tbd_2615 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_2616 PF00916 Sulfate permease family Tbd_2616 PF01740 STAS domain Tbd_2620 PF02594 Uncharacterised ACR, YggU family COG1872 Tbd_2622 PF07728 AAA domain (dynein-related subfamily) Tbd_2622 PF08406 CbbQ/NirQ/NorQ C-terminal Tbd_2623 PF00101 Ribulose bisphosphate carboxylase, small chain Tbd_2624 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Tbd_2624 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Tbd_2625 PF03466 LysR substrate binding domain Tbd_2625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2626 PF00982 Glycosyltransferase family 20 Tbd_2627 PF00982 Glycosyltransferase family 20 Tbd_2627 PF05116 Sucrose-6F-phosphate phosphohydrolase Tbd_2629 PF01343 Peptidase family S49 Tbd_2629 PF08496 Peptidase family S49 N-terminal Tbd_2631 PF01641 SelR domain Tbd_2632 PF01625 Peptide methionine sulfoxide reductase Tbd_2634 PF01590 GAF domain Tbd_2634 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2634 PF00360 Phytochrome region Tbd_2634 PF00563 EAL domain Tbd_2636 PF00092 von Willebrand factor type A domain Tbd_2637 PF08406 CbbQ/NirQ/NorQ C-terminal Tbd_2637 PF07728 AAA domain (dynein-related subfamily) Tbd_2638 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Tbd_2638 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Tbd_2639 PF03466 LysR substrate binding domain Tbd_2639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2640 PF00916 Sulfate permease family Tbd_2640 PF01740 STAS domain Tbd_2641 PF13614 AAA domain Tbd_2642 PF01329 Pterin 4 alpha carbinolamine dehydratase Tbd_2643 PF00210 Ferritin-like domain Tbd_2651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2651 PF03466 LysR substrate binding domain Tbd_2653 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Tbd_2655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tbd_2655 PF00361 Proton-conducting membrane transporter Tbd_2656 PF02417 Chromate transporter Tbd_2658 PF04358 DsrC like protein Tbd_2661 PF00731 AIR carboxylase Tbd_2662 PF02222 ATP-grasp domain Tbd_2662 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Tbd_2666 PF00551 Formyl transferase Tbd_2667 PF00586 AIR synthase related protein, N-terminal domain Tbd_2667 PF02769 AIR synthase related protein, C-terminal domain Tbd_2668 PF01259 SAICAR synthetase Tbd_2670 PF00072 Response regulator receiver domain Tbd_2671 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2671 PF01627 Hpt domain Tbd_2671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2671 PF00072 Response regulator receiver domain Tbd_2672 PF00378 Enoyl-CoA hydratase/isomerase Tbd_2673 PF01925 Sulfite exporter TauE/SafE Tbd_2680 PF02384 N-6 DNA Methylase Tbd_2681 PF00270 DEAD/DEAH box helicase Tbd_2681 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Tbd_2681 PF17191 RecG wedge domain Tbd_2682 PF01420 Type I restriction modification DNA specificity domain Tbd_2683 PF13476 AAA domain Tbd_2686 PF00696 Amino acid kinase family Tbd_2688 PF07715 TonB-dependent Receptor Plug Domain Tbd_2688 PF00593 TonB dependent receptor Tbd_2690 PF02954 Bacterial regulatory protein, Fis family Tbd_2690 PF00072 Response regulator receiver domain Tbd_2692 PF02673 Bacitracin resistance protein BacA Tbd_2693 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2693 PF08448 PAS fold Tbd_2694 PF01964 Radical SAM ThiC family Tbd_2694 PF13667 ThiC-associated domain Tbd_2696 PF00581 Rhodanese-like domain Tbd_2697 PF02321 Outer membrane efflux protein Tbd_2698 PF00534 Glycosyl transferases group 1 Tbd_2698 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Tbd_2699 PF01370 NAD dependent epimerase/dehydratase family Tbd_2703 PF03471 Transporter associated domain Tbd_2703 PF00571 CBS domain Tbd_2704 PF02130 Uncharacterized protein family UPF0054 Tbd_2705 PF02562 PhoH-like protein Tbd_2706 PF01938 TRAM domain Tbd_2706 PF04055 Radical SAM superfamily Tbd_2706 PF00919 Uncharacterized protein family UPF0004 Tbd_2707 PF03006 Haemolysin-III related Tbd_2709 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tbd_2710 PF02654 Cobalamin-5-phosphate synthase Tbd_2712 PF02277 Phosphoribosyltransferase Tbd_2713 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Tbd_2714 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tbd_2714 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_2715 PF00155 Aminotransferase class I and II Tbd_2716 PF03186 CobD/Cbib protein Tbd_2716 PF17113 Regulatory signalling modulator protein AmpE Tbd_2717 PF00881 Nitroreductase family Tbd_2718 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Tbd_2718 PF12557 Cob(I)alamin adenosyltransferase N terminal Tbd_2720 PF00593 TonB dependent receptor Tbd_2720 PF07715 TonB-dependent Receptor Plug Domain Tbd_2723 PF05164 Cell division protein ZapA Tbd_2724 PF01812 5-formyltetrahydrofolate cyclo-ligase family Tbd_2725 PF01235 Sodium:alanine symporter family Tbd_2727 PF03190 Protein of unknown function, DUF255 Tbd_2729 PF13614 AAA domain Tbd_2730 PF00920 Dehydratase family Tbd_2731 PF01790 Prolipoprotein diacylglyceryl transferase Tbd_2733 PF07690 Major Facilitator Superfamily Tbd_2735 PF01925 Sulfite exporter TauE/SafE Tbd_2736 PF00581 Rhodanese-like domain Tbd_2737 PF07690 Major Facilitator Superfamily Tbd_2738 PF00581 Rhodanese-like domain Tbd_2738 PF00753 Metallo-beta-lactamase superfamily Tbd_2747 PF07977 FabA-like domain Tbd_2751 PF01522 Polysaccharide deacetylase Tbd_2751 PF00457 Glycosyl hydrolases family 11 Tbd_2751 PF03422 Carbohydrate binding module (family 6) Tbd_2753 PF00109 Beta-ketoacyl synthase, N-terminal domain Tbd_2753 PF02801 Beta-ketoacyl synthase, C-terminal domain Tbd_2757 PF00999 Sodium/hydrogen exchanger family Tbd_2758 PF01209 ubiE/COQ5 methyltransferase family Tbd_2763 PF04820 Tryptophan halogenase Tbd_2764 PF04239 Protein of unknown function (DUF421) Tbd_2767 PF04898 Glutamate synthase central domain Tbd_2767 PF00310 Glutamine amidotransferases class-II Tbd_2767 PF01645 Conserved region in glutamate synthase Tbd_2767 PF01493 GXGXG motif Tbd_2768 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2768 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tbd_2769 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2771 PF00072 Response regulator receiver domain Tbd_2771 PF00158 Sigma-54 interaction domain Tbd_2772 PF07043 Protein of unknown function (DUF1328) Tbd_2779 PF01208 Uroporphyrinogen decarboxylase (URO-D) Tbd_2781 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Tbd_2781 PF18074 Primosomal protein N C-terminal domain Tbd_2781 PF17764 3′ DNA-binding domain (3′BD) Tbd_2781 PF00271 Helicase conserved C-terminal domain Tbd_2781 PF00270 DEAD/DEAH box helicase Tbd_2782 PF00750 tRNA synthetases class I (R) Tbd_2782 PF03485 Arginyl tRNA synthetase N terminal domain Tbd_2782 PF05746 DALR anticodon binding domain Tbd_2784 PF13462 Thioredoxin Tbd_2785 PF00106 short chain dehydrogenase Tbd_2786 PF00072 Response regulator receiver domain Tbd_2786 PF00196 Bacterial regulatory proteins, luxR family Tbd_2787 PF13098 Thioredoxin-like domain Tbd_2788 PF00578 AhpC/TSA family Tbd_2789 PF08534 Redoxin Tbd_2790 PF11412 Disulphide bond corrector protein DsbC Tbd_2790 PF02683 Cytochrome C biogenesis protein transmembrane region Tbd_2791 PF00486 Transcriptional regulatory protein, C terminal Tbd_2791 PF00072 Response regulator receiver domain Tbd_2792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2792 PF08521 Two-component sensor kinase N-terminal Tbd_2792 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2793 PF01380 SIS domain Tbd_2794 PF12804 MobA-like NTP transferase domain Tbd_2794 PF14602 Hexapeptide repeat of succinyl-transferase Tbd_2794 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_2795 PF00691 OmpA family Tbd_2795 PF00223 Photosystem I psaA/psaB protein Tbd_2796 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tbd_2796 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Tbd_2797 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_2797 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tbd_2798 PF00231 ATP synthase Tbd_2799 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tbd_2799 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_2799 PF00306 ATP synthase alpha/beta chain, C terminal domain Tbd_2800 PF00213 ATP synthase delta (OSCP) subunit Tbd_2801 PF00430 ATP synthase B/B' CF(0) Tbd_2802 PF00137 ATP synthase subunit C Tbd_2803 PF00119 ATP synthase A chain Tbd_2805 PF02195 ParB-like nuclease domain Tbd_2805 PF17762 HTH domain found in ParB protein Tbd_2806 PF13614 AAA domain Tbd_2807 PF02527 rRNA small subunit methyltransferase G Tbd_2808 PF13932 GidA associated domain Tbd_2808 PF01134 Glucose inhibited division protein A Tbd_2811 PF03746 LamB/YcsF family Tbd_2812 PF02626 Carboxyltransferase domain, subdomain A and B Tbd_2813 PF02682 Carboxyltransferase domain, subdomain C and D Tbd_2814 PF00990 Diguanylate cyclase, GGDEF domain Tbd_2814 PF08448 PAS fold Tbd_2815 PF00270 DEAD/DEAH box helicase Tbd_2815 PF00271 Helicase conserved C-terminal domain Tbd_2816 PF00005 ABC transporter Tbd_2816 PF00664 ABC transporter transmembrane region Tbd_2820 PF13362 Toprim domain Tbd_2820 PF08401 Domain of unknown function (DUF1738) Tbd_2820 PF18818 Metallopeptidase superfamily domain Tbd_2822 PF05930 Prophage CP4-57 regulatory protein (AlpA) Tbd_2823 PF13356 Arm DNA-binding domain Tbd_2823 PF00589 Phage integrase family Tbd_2824 PF01926 50S ribosome-binding GTPase Tbd_2824 PF12631 MnmE helical domain Tbd_2824 PF10396 GTP-binding protein TrmE N-terminus Tbd_2825 PF02096 60Kd inner membrane protein Tbd_2825 PF14849 YidC periplasmic domain Tbd_2826 PF00825 Ribonuclease P Tbd_2827 PF00468 Ribosomal protein L34