Tbd_0001 PF00308 Bacterial dnaA protein Tbd_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tbd_0001 PF11638 DnaA N-terminal domain Tbd_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tbd_0002 PF02767 DNA polymerase III beta subunit, central domain Tbd_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tbd_0003 PF00204 DNA gyrase B Tbd_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Tbd_0003 PF01751 Toprim domain Tbd_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0006 PF01243 Pyridoxamine 5'-phosphate oxidase Tbd_0007 PF00216 Bacterial DNA-binding protein Tbd_0008 PF00581 Rhodanese-like domain Tbd_0008 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Tbd_0010 PF01131 DNA topoisomerase Tbd_0010 PF01396 Tbd_0010 Tbd_0010 PF01751 Toprim domain Tbd_0010 PF13368 Tbd_0010 Tbd_0011 PF04361 Tbd_0011 Tbd_0012 PF02481 DNA recombination-mediator protein A Tbd_0013 PF01476 LysM domain Tbd_0014 PF01327 Polypeptide deformylase Tbd_0015 PF00551 Formyl transferase Tbd_0015 PF02911 Formyl transferase, C-terminal domain Tbd_0016 PF01029 NusB family Tbd_0016 PF01189 NOL1/NOP2/sun family Tbd_0017 PF14334 Tbd_0017 Tbd_0018 PF00672 HAMP domain Tbd_0018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0018 PF13188 PAS domain Tbd_0019 PF00072 Response regulator receiver domain Tbd_0019 PF02954 Bacterial regulatory protein, Fis family Tbd_0019 PF14532 Sigma-54 interaction domain Tbd_0020 PF02080 TrkA-C domain Tbd_0020 PF02254 TrkA-N domain Tbd_0021 PF02386 Cation transport protein Tbd_0022 PF02386 Cation transport protein Tbd_0023 PF13432 Tetratricopeptide repeat Tbd_0024 PF04362 Bacterial Fe(2+) trafficking Tbd_0025 PF01895 PhoU domain Tbd_0027 PF00293 NUDIX domain Tbd_0027 PF02581 Thiamine monophosphate synthase/TENI Tbd_0028 PF05673 Protein of unknown function (DUF815) Tbd_0029 PF01960 ArgJ family Tbd_0032 PF06080 Tbd_0032 Tbd_0033 PF00580 UvrD/REP helicase N-terminal domain Tbd_0033 PF12705 PD-(D/E)XK nuclease superfamily Tbd_0033 PF13361 UvrD-like helicase C-terminal domain Tbd_0034 PF12705 PD-(D/E)XK nuclease superfamily Tbd_0035 PF00037 4Fe-4S binding domain Tbd_0035 PF11953 Domain of unknown function (DUF3470) Tbd_0036 PF00085 Thioredoxin Tbd_0037 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_0037 PF07497 Rho termination factor, RNA-binding domain Tbd_0037 PF07498 Rho termination factor, N-terminal domain Tbd_0039 PF01197 Ribosomal protein L31 Tbd_0040 PF01435 Peptidase family M48 Tbd_0042 PF12804 MobA-like NTP transferase domain Tbd_0043 PF00753 Metallo-beta-lactamase superfamily Tbd_0044 PF02754 Tbd_0044 Tbd_0044 PF12838 4Fe-4S dicluster domain Tbd_0045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Tbd_0046 PF01565 FAD binding domain Tbd_0047 PF01565 FAD binding domain Tbd_0047 PF02913 FAD linked oxidases, C-terminal domain Tbd_0048 PF07005 Protein of unknown function, DUF1537 Tbd_0048 PF17042 Tbd_0048 Tbd_0049 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Tbd_0049 PF09364 XFP N-terminal domain Tbd_0050 PF01614 Bacterial transcriptional regulator Tbd_0050 PF09339 IclR helix-turn-helix domain Tbd_0052 PF13740 ACT domain Tbd_0054 PF04367 Tbd_0054 Tbd_0055 PF11845 Tbd_0055 Tbd_0056 PF08668 HDOD domain Tbd_0057 PF01734 Patatin-like phospholipase Tbd_0058 PF00317 Ribonucleotide reductase, all-alpha domain Tbd_0058 PF02867 Ribonucleotide reductase, barrel domain Tbd_0059 PF01636 Phosphotransferase enzyme family Tbd_0060 PF00733 Asparagine synthase Tbd_0060 PF13537 Glutamine amidotransferase domain Tbd_0061 PF01471 Putative peptidoglycan binding domain Tbd_0061 PF13406 Transglycosylase SLT domain Tbd_0062 PF09996 Uncharacterized protein conserved in bacteria (DUF2237) Tbd_0064 PF00034 Cytochrome c Tbd_0064 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0065 PF00892 EamA-like transporter family Tbd_0066 PF01272 Transcription elongation factor, GreA/GreB, C-term Tbd_0066 PF14760 Rnk N-terminus Tbd_0067 PF13192 Thioredoxin domain Tbd_0067 PF13646 HEAT repeats Tbd_0068 PF00753 Metallo-beta-lactamase superfamily Tbd_0069 PF00491 Arginase family Tbd_0070 PF02239 Cytochrome D1 heme domain Tbd_0070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0071 PF04055 Radical SAM superfamily Tbd_0071 PF13353 4Fe-4S single cluster domain Tbd_0072 PF13404 AsnC-type helix-turn-helix domain Tbd_0073 PF13404 AsnC-type helix-turn-helix domain Tbd_0075 PF02239 Cytochrome D1 heme domain Tbd_0076 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0077 PF02239 Cytochrome D1 heme domain Tbd_0077 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0078 PF04205 FMN-binding domain Tbd_0078 PF12801 Tbd_0078 Tbd_0079 PF00027 Cyclic nucleotide-binding domain Tbd_0079 PF13545 Crp-like helix-turn-helix domain Tbd_0081 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tbd_0081 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Tbd_0082 PF03547 Tbd_0082 Tbd_0083 PF00768 D-alanyl-D-alanine carboxypeptidase Tbd_0084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0085 PF00072 Response regulator receiver domain Tbd_0085 PF00563 EAL domain Tbd_0085 PF00989 PAS fold Tbd_0085 PF00990 GGDEF domain Tbd_0087 PF13937 Tbd_0087 Tbd_0088 PF00474 Sodium:solute symporter family Tbd_0089 PF00929 Exonuclease Tbd_0090 PF00571 CBS domain Tbd_0090 PF03445 Tbd_0090 Tbd_0090 PF10335 Tbd_0090 Tbd_0091 PF00118 TCP-1/cpn60 chaperonin family Tbd_0092 PF00166 Chaperonin 10 Kd subunit Tbd_0093 PF00202 Aminotransferase class-III Tbd_0095 PF00753 Metallo-beta-lactamase superfamily Tbd_0095 PF07521 RNA-metabolising metallo-beta-lactamase Tbd_0095 PF10996 Beta-Casp domain Tbd_0096 PF02253 Phospholipase A1 Tbd_0097 PF13365 Trypsin-like peptidase domain Tbd_0098 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Tbd_0098 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Tbd_0098 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tbd_0099 PF01370 NAD dependent epimerase/dehydratase family Tbd_0100 PF08668 HDOD domain Tbd_0100 PF13185 GAF domain Tbd_0101 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Tbd_0102 PF05433 Tbd_0102 Tbd_0103 PF00156 Phosphoribosyl transferase domain Tbd_0104 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tbd_0105 PF01467 Cytidylyltransferase Tbd_0106 PF04972 BON domain Tbd_0107 PF13580 SIS domain Tbd_0108 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tbd_0109 PF01979 Amidohydrolase family Tbd_0110 PF02381 MraZ protein Tbd_0111 PF01795 MraW methylase family Tbd_0112 PF04999 Tbd_0112 Tbd_0113 PF00905 Penicillin binding protein transpeptidase domain Tbd_0113 PF03717 Penicillin-binding Protein dimerisation domain Tbd_0114 PF01225 Mur ligase family, catalytic domain Tbd_0114 PF02875 Mur ligase family, glutamate ligase domain Tbd_0114 PF08245 Mur ligase middle domain Tbd_0115 PF01225 Mur ligase family, catalytic domain Tbd_0115 PF02875 Mur ligase family, glutamate ligase domain Tbd_0115 PF08245 Mur ligase middle domain Tbd_0116 PF00953 Glycosyl transferase family 4 Tbd_0116 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Tbd_0117 PF02875 Mur ligase family, glutamate ligase domain Tbd_0117 PF08245 Mur ligase middle domain Tbd_0118 PF01098 Tbd_0118 Tbd_0119 PF03033 Glycosyltransferase family 28 N-terminal domain Tbd_0119 PF04101 Glycosyltransferase family 28 C-terminal domain Tbd_0120 PF01225 Mur ligase family, catalytic domain Tbd_0120 PF02875 Mur ligase family, glutamate ligase domain Tbd_0120 PF08245 Mur ligase middle domain Tbd_0121 PF01565 FAD binding domain Tbd_0121 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tbd_0122 PF01820 D-ala D-ala ligase N-terminus Tbd_0122 PF07478 D-ala D-ala ligase C-terminus Tbd_0123 PF03799 Cell division protein FtsQ Tbd_0123 PF08478 POTRA domain, FtsQ-type Tbd_0124 PF02491 SHS2 domain inserted in FTSA Tbd_0124 PF14450 Cell division protein FtsA Tbd_0125 PF00091 Tubulin/FtsZ family, GTPase domain Tbd_0125 PF12327 FtsZ family, C-terminal domain Tbd_0126 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Tbd_0127 PF00691 OmpA family Tbd_0127 PF13505 Outer membrane protein beta-barrel domain Tbd_0128 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0129 PF00034 Cytochrome c Tbd_0129 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0130 PF05258 Tbd_0130 Tbd_0131 PF01043 SecA preprotein cross-linking domain Tbd_0131 PF02810 SEC-C motif Tbd_0131 PF07516 SecA Wing and Scaffold domain Tbd_0131 PF07517 SecA DEAD-like domain Tbd_0135 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0135 PF08521 Tbd_0135 Tbd_0136 PF00072 Response regulator receiver domain Tbd_0136 PF00486 Transcriptional regulatory protein, C terminal Tbd_0137 PF09626 Dihaem cytochrome c Tbd_0138 PF09086 Domain of unknown function (DUF1924) Tbd_0139 PF01292 Prokaryotic cytochrome b561 Tbd_0140 PF00884 Sulfatase Tbd_0142 PF16576 Tbd_0142 Tbd_0143 PF00873 AcrB/AcrD/AcrF family Tbd_0144 PF02321 Outer membrane efflux protein Tbd_0145 PF08238 Sel1 repeat Tbd_0146 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0147 PF06155 Protein of unknown function (DUF971) Tbd_0148 PF03881 Fructosamine kinase Tbd_0149 PF03168 Late embryogenesis abundant protein Tbd_0151 PF00005 ABC transporter Tbd_0151 PF12848 ABC transporter Tbd_0152 PF00563 EAL domain Tbd_0152 PF00672 HAMP domain Tbd_0152 PF00990 GGDEF domain Tbd_0152 PF08447 PAS fold Tbd_0152 PF08448 PAS fold Tbd_0153 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Tbd_0154 PF00583 Acetyltransferase (GNAT) family Tbd_0154 PF00696 Amino acid kinase family Tbd_0155 PF04452 RNA methyltransferase Tbd_0156 PF00578 AhpC/TSA family Tbd_0157 PF08241 Methyltransferase domain Tbd_0158 PF00459 Inositol monophosphatase family Tbd_0159 PF00456 Transketolase, thiamine diphosphate binding domain Tbd_0159 PF02779 Transketolase, pyrimidine binding domain Tbd_0159 PF02780 Transketolase, C-terminal domain Tbd_0160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tbd_0160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tbd_0161 PF00162 Phosphoglycerate kinase Tbd_0162 PF00224 Pyruvate kinase, barrel domain Tbd_0162 PF02887 Pyruvate kinase, alpha/beta domain Tbd_0163 PF01116 Fructose-bisphosphate aldolase class-II Tbd_0166 PF00580 UvrD/REP helicase N-terminal domain Tbd_0166 PF13361 UvrD-like helicase C-terminal domain Tbd_0167 PF13417 Glutathione S-transferase, N-terminal domain Tbd_0168 PF00149 Calcineurin-like phosphoesterase Tbd_0169 PF01553 Acyltransferase Tbd_0171 PF00294 pfkB family carbohydrate kinase Tbd_0172 PF01219 Prokaryotic diacylglycerol kinase Tbd_0173 PF02347 Glycine cleavage system P-protein Tbd_0174 PF08534 Redoxin Tbd_0175 PF11342 Protein of unknown function (DUF3144) Tbd_0176 PF02347 Glycine cleavage system P-protein Tbd_0177 PF01597 Glycine cleavage H-protein Tbd_0178 PF01571 Aminomethyltransferase folate-binding domain Tbd_0178 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tbd_0179 PF11906 Tbd_0179 Tbd_0179 PF13717 Tbd_0179 Tbd_0180 PF06325 Ribosomal protein L11 methyltransferase (PrmA) Tbd_0181 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Tbd_0181 PF02785 Biotin carboxylase C-terminal domain Tbd_0181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tbd_0182 PF00364 Biotin-requiring enzyme Tbd_0183 PF01220 Dehydroquinase class II Tbd_0184 PF08534 Redoxin Tbd_0185 PF01578 Tbd_0185 Tbd_0186 PF05140 Tbd_0186 Tbd_0187 PF00034 Cytochrome c Tbd_0187 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0188 PF01926 50S ribosome-binding GTPase Tbd_0189 PF00490 Delta-aminolevulinic acid dehydratase Tbd_0191 PF00899 ThiF family Tbd_0194 PF07589 Tbd_0194 Tbd_0195 PF13181 Tetratricopeptide repeat Tbd_0195 PF13432 Tetratricopeptide repeat Tbd_0195 PF14559 Tetratricopeptide repeat Tbd_0196 PF13432 Tetratricopeptide repeat Tbd_0196 PF14559 Tetratricopeptide repeat Tbd_0197 PF00072 Response regulator receiver domain Tbd_0197 PF00158 Sigma-54 interaction domain Tbd_0197 PF02954 Bacterial regulatory protein, Fis family Tbd_0198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0198 PF13185 GAF domain Tbd_0199 PF02397 Tbd_0199 Tbd_0201 PF00905 Penicillin binding protein transpeptidase domain Tbd_0201 PF00912 Transglycosylase Tbd_0201 PF17092 Tbd_0201 Tbd_0202 PF11104 Type IV pilus assembly protein PilM; Tbd_0203 PF05137 Tbd_0203 Tbd_0204 PF04350 Pilus assembly protein, PilO Tbd_0205 PF04351 Pilus assembly protein, PilP Tbd_0206 PF00263 Tbd_0206 Tbd_0206 PF03958 Bacterial type II/III secretion system short domain Tbd_0206 PF07660 Secretin and TonB N terminus short domain Tbd_0206 PF11741 AMIN domain Tbd_0207 PF01202 Shikimate kinase Tbd_0208 PF04892 Tbd_0208 Tbd_0210 PF01583 Adenylylsulphate kinase Tbd_0210 PF01747 ATP-sulfurylase Tbd_0210 PF14306 PUA-like domain Tbd_0211 PF07589 Tbd_0211 Tbd_0212 PF00474 Sodium:solute symporter family Tbd_0213 PF03109 Tbd_0213 Tbd_0215 PF01209 ubiE/COQ5 methyltransferase family Tbd_0216 PF00072 Response regulator receiver domain Tbd_0216 PF00486 Transcriptional regulatory protein, C terminal Tbd_0217 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0217 PF11808 Tbd_0217 Tbd_0218 PF01230 HIT domain Tbd_0219 PF01565 FAD binding domain Tbd_0219 PF02754 Tbd_0219 Tbd_0219 PF02913 FAD linked oxidases, C-terminal domain Tbd_0219 PF11880 Tbd_0219 Tbd_0219 PF12447 Tbd_0219 Tbd_0219 PF13183 4Fe-4S dicluster domain Tbd_0220 PF05661 Tbd_0220 Tbd_0221 PF02445 Quinolinate synthetase A protein Tbd_0222 PF00308 Bacterial dnaA protein Tbd_0223 PF00085 Thioredoxin Tbd_0226 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tbd_0226 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tbd_0227 PF01491 Frataxin-like domain Tbd_0228 PF12802 MarR family Tbd_0229 PF00206 Lyase Tbd_0229 PF14698 Argininosuccinate lyase C-terminal Tbd_0230 PF06580 Tbd_0230 Tbd_0231 PF00072 Response regulator receiver domain Tbd_0231 PF04397 LytTr DNA-binding domain Tbd_0232 PF00293 NUDIX domain Tbd_0234 PF00809 Pterin binding enzyme Tbd_0234 PF02310 B12 binding domain Tbd_0234 PF02574 Homocysteine S-methyltransferase Tbd_0234 PF02607 B12 binding domain Tbd_0234 PF02965 Vitamin B12 dependent methionine synthase, activation domain Tbd_0235 PF00581 Rhodanese-like domain Tbd_0236 PF01988 Tbd_0236 Tbd_0237 PF01078 Magnesium chelatase, subunit ChlI Tbd_0237 PF13335 Tbd_0237 Tbd_0237 PF13541 Subunit ChlI of Mg-chelatase Tbd_0238 PF04380 Tbd_0238 Tbd_0239 PF09694 Tbd_0239 Tbd_0240 PF00543 Nitrogen regulatory protein P-II Tbd_0241 PF00909 Ammonium Transporter Family Tbd_0242 PF01227 GTP cyclohydrolase I Tbd_0243 PF14346 Domain of unknown function (DUF4398) Tbd_0244 PF00691 OmpA family Tbd_0244 PF14346 Domain of unknown function (DUF4398) Tbd_0246 PF04204 Homoserine O-succinyltransferase Tbd_0247 PF02405 Tbd_0247 Tbd_0248 PF00005 ABC transporter Tbd_0249 PF02470 Tbd_0249 Tbd_0250 PF03886 Protein of unknown function (DUF330) Tbd_0251 PF14467 Domain of unknown function (DUF4426) Tbd_0252 PF13386 Tbd_0252 Tbd_0253 PF07690 Major Facilitator Superfamily Tbd_0254 PF03372 Endonuclease/Exonuclease/phosphatase family Tbd_0255 PF00156 Phosphoribosyl transferase domain Tbd_0256 PF13511 Tbd_0256 Tbd_0257 PF02637 GatB domain Tbd_0257 PF02934 GatB/GatE catalytic domain Tbd_0258 PF01425 Amidase Tbd_0259 PF02686 Glu-tRNAGln amidotransferase C subunit Tbd_0260 PF06723 MreB/Mbl protein Tbd_0261 PF04085 rod shape-determining protein MreC Tbd_0262 PF04093 Tbd_0262 Tbd_0263 PF00905 Penicillin binding protein transpeptidase domain Tbd_0263 PF03717 Penicillin-binding Protein dimerisation domain Tbd_0264 PF01098 Tbd_0264 Tbd_0265 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Tbd_0265 PF05036 Sporulation related domain Tbd_0266 PF00768 D-alanyl-D-alanine carboxypeptidase Tbd_0266 PF07943 Penicillin-binding protein 5, C-terminal domain Tbd_0267 PF01063 Aminotransferase class IV Tbd_0268 PF04359 Protein of unknown function (DUF493) Tbd_0269 PF03099 Biotin/lipoate A/B protein ligase family Tbd_0270 PF02885 Glycosyl transferase family, helical bundle domain Tbd_0271 PF00355 Rieske [2Fe-2S] domain Tbd_0272 PF00578 AhpC/TSA family Tbd_0274 PF04055 Radical SAM superfamily Tbd_0274 PF16881 Tbd_0274 Tbd_0276 PF01061 Tbd_0276 Tbd_0277 PF00005 ABC transporter Tbd_0278 PF12146 Putative lysophospholipase Tbd_0279 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Tbd_0280 PF12643 Tbd_0280 Tbd_0281 PF02563 Polysaccharide biosynthesis/export protein Tbd_0281 PF10531 SLBB domain Tbd_0282 PF02706 Chain length determinant protein Tbd_0282 PF13807 Tbd_0282 Tbd_0283 PF13614 AAA domain Tbd_0284 PF10082 Tbd_0284 Tbd_0285 PF13401 AAA domain Tbd_0286 PF02350 UDP-N-acetylglucosamine 2-epimerase Tbd_0287 PF01522 Polysaccharide deacetylase Tbd_0287 PF11959 Tbd_0287 Tbd_0288 PF13480 Acetyltransferase (GNAT) domain Tbd_0289 PF13692 Glycosyl transferases group 1 Tbd_0290 PF09721 Tbd_0290 Tbd_0290 PF11984 Tbd_0290 Tbd_0291 PF13439 Glycosyltransferase Family 4 Tbd_0291 PF13692 Glycosyl transferases group 1 Tbd_0292 PF00733 Asparagine synthase Tbd_0292 PF13537 Glutamine amidotransferase domain Tbd_0293 PF13579 Glycosyl transferase 4-like domain Tbd_0293 PF13692 Glycosyl transferases group 1 Tbd_0294 PF00534 Glycosyl transferases group 1 Tbd_0294 PF13439 Glycosyltransferase Family 4 Tbd_0297 PF04932 Tbd_0297 Tbd_0298 PF00733 Asparagine synthase Tbd_0298 PF13537 Glutamine amidotransferase domain Tbd_0299 PF13469 Sulfotransferase family Tbd_0301 PF00535 Glycosyl transferase family 2 Tbd_0302 PF00534 Glycosyl transferases group 1 Tbd_0302 PF13439 Glycosyltransferase Family 4 Tbd_0303 PF00535 Glycosyl transferase family 2 Tbd_0305 PF13692 Glycosyl transferases group 1 Tbd_0306 PF00884 Sulfatase Tbd_0306 PF13641 Glycosyltransferase like family 2 Tbd_0308 PF00535 Glycosyl transferase family 2 Tbd_0309 PF00535 Glycosyl transferase family 2 Tbd_0310 PF01522 Polysaccharide deacetylase Tbd_0311 PF13440 Tbd_0311 Tbd_0311 PF14667 Polysaccharide biosynthesis C-terminal domain Tbd_0312 PF13489 Methyltransferase domain Tbd_0313 PF00535 Glycosyl transferase family 2 Tbd_0314 PF13692 Glycosyl transferases group 1 Tbd_0315 PF01761 3-dehydroquinate synthase Tbd_0316 PF01966 HD domain Tbd_0316 PF13286 Phosphohydrolase-associated domain Tbd_0317 PF00156 Phosphoribosyl transferase domain Tbd_0319 PF04055 Radical SAM superfamily Tbd_0319 PF06968 Biotin and Thiamin Synthesis associated domain Tbd_0320 PF00155 Aminotransferase class I and II Tbd_0321 PF00561 alpha/beta hydrolase fold Tbd_0322 PF08241 Methyltransferase domain Tbd_0323 PF13500 AAA domain Tbd_0324 PF10003 Tbd_0324 Tbd_0325 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Tbd_0325 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Tbd_0325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0326 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0328 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Tbd_0329 PF11174 Tbd_0329 Tbd_0330 PF00510 Cytochrome c oxidase subunit III Tbd_0331 PF11137 Tbd_0331 Tbd_0332 PF02104 Tbd_0332 Tbd_0334 PF02628 Tbd_0334 Tbd_0335 PF01040 UbiA prenyltransferase family Tbd_0336 PF02082 Transcriptional regulator Tbd_0337 PF02630 SCO1/SenC Tbd_0338 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0339 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Tbd_0340 PF05545 Tbd_0340 Tbd_0341 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0341 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Tbd_0342 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Tbd_0342 PF12801 Tbd_0342 Tbd_0342 PF13746 4Fe-4S dicluster domain Tbd_0343 PF05751 Tbd_0343 Tbd_0344 PF03597 Tbd_0344 Tbd_0345 PF00140 Sigma-70 factor, region 1 Tbd_0345 PF04542 Sigma-70 region 2 Tbd_0345 PF04545 Sigma-70, region 4 Tbd_0347 PF00239 Resolvase, N terminal domain Tbd_0347 PF07508 Recombinase Tbd_0348 PF00072 Response regulator receiver domain Tbd_0348 PF00486 Transcriptional regulatory protein, C terminal Tbd_0350 PF00563 EAL domain Tbd_0350 PF00990 GGDEF domain Tbd_0351 PF00196 Bacterial regulatory proteins, luxR family Tbd_0352 PF07589 Tbd_0352 Tbd_0354 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Tbd_0354 PF08479 POTRA domain, ShlB-type Tbd_0355 PF05860 haemagglutination activity domain Tbd_0355 PF12545 Tbd_0355 Tbd_0355 PF13018 Tbd_0355 Tbd_0356 PF00149 Calcineurin-like phosphoesterase Tbd_0356 PF02872 5'-nucleotidase, C-terminal domain Tbd_0357 PF01618 Tbd_0357 Tbd_0357 PF10102 Tbd_0357 Tbd_0357 PF13385 Concanavalin A-like lectin/glucanases superfamily Tbd_0358 PF02472 Biopolymer transport protein ExbD/TolR Tbd_0359 PF13103 TonB C terminal Tbd_0360 PF16930 Tbd_0360 Tbd_0361 PF12796 Ankyrin repeats (3 copies) Tbd_0363 PF06803 Tbd_0363 Tbd_0365 PF00589 Phage integrase family Tbd_0368 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tbd_0375 PF00005 ABC transporter Tbd_0376 PF00448 SRP54-type protein, GTPase domain Tbd_0376 PF02881 SRP54-type protein, helical bundle domain Tbd_0377 PF00675 Insulinase (Peptidase family M16) Tbd_0377 PF05193 Peptidase M16 inactive domain Tbd_0378 PF00675 Insulinase (Peptidase family M16) Tbd_0378 PF05193 Peptidase M16 inactive domain Tbd_0379 PF03602 Conserved hypothetical protein 95 Tbd_0380 PF01467 Cytidylyltransferase Tbd_0381 PF00037 4Fe-4S binding domain Tbd_0382 PF00350 Dynamin family Tbd_0383 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Tbd_0383 PF06827 Zinc finger found in FPG and IleRS Tbd_0383 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Tbd_0384 PF13429 Tetratricopeptide repeat Tbd_0384 PF13432 Tetratricopeptide repeat Tbd_0385 PF03550 Outer membrane lipoprotein LolB Tbd_0386 PF00288 GHMP kinases N terminal domain Tbd_0386 PF08544 GHMP kinases C terminal Tbd_0387 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tbd_0387 PF14572 Phosphoribosyl synthetase-associated domain Tbd_0388 PF01386 Ribosomal L25p family Tbd_0388 PF14693 Ribosomal protein TL5, C-terminal domain Tbd_0389 PF01195 Peptidyl-tRNA hydrolase Tbd_0390 PF01926 50S ribosome-binding GTPase Tbd_0390 PF06071 Protein of unknown function (DUF933) Tbd_0391 PF00009 Elongation factor Tu GTP binding domain Tbd_0391 PF03143 Elongation factor Tu C-terminal domain Tbd_0391 PF03144 Elongation factor Tu domain 2 Tbd_0392 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Tbd_0393 PF00467 KOW motif Tbd_0393 PF02357 Transcription termination factor nusG Tbd_0394 PF00298 Ribosomal protein L11, RNA binding domain Tbd_0394 PF03946 Ribosomal protein L11, N-terminal domain Tbd_0395 PF00687 Ribosomal protein L1p/L10e family Tbd_0396 PF00466 Ribosomal protein L10 Tbd_0397 PF00542 Ribosomal protein L7/L12 C-terminal domain Tbd_0397 PF16320 Tbd_0397 Tbd_0398 PF00562 RNA polymerase Rpb2, domain 6 Tbd_0398 PF04560 RNA polymerase Rpb2, domain 7 Tbd_0398 PF04561 RNA polymerase Rpb2, domain 2 Tbd_0398 PF04563 RNA polymerase beta subunit Tbd_0398 PF04565 RNA polymerase Rpb2, domain 3 Tbd_0398 PF10385 RNA polymerase beta subunit external 1 domain Tbd_0399 PF00623 RNA polymerase Rpb1, domain 2 Tbd_0399 PF04983 RNA polymerase Rpb1, domain 3 Tbd_0399 PF04997 RNA polymerase Rpb1, domain 1 Tbd_0399 PF04998 RNA polymerase Rpb1, domain 5 Tbd_0399 PF05000 RNA polymerase Rpb1, domain 4 Tbd_0400 PF00164 Ribosomal protein S12/S23 Tbd_0401 PF00177 Ribosomal protein S7p/S5e Tbd_0402 PF00009 Elongation factor Tu GTP binding domain Tbd_0402 PF00679 Elongation factor G C-terminus Tbd_0402 PF03144 Elongation factor Tu domain 2 Tbd_0402 PF03764 Elongation factor G, domain IV Tbd_0402 PF14492 Elongation Factor G, domain II Tbd_0403 PF00009 Elongation factor Tu GTP binding domain Tbd_0403 PF03143 Elongation factor Tu C-terminal domain Tbd_0403 PF03144 Elongation factor Tu domain 2 Tbd_0404 PF00338 Ribosomal protein S10p/S20e Tbd_0405 PF00297 Ribosomal protein L3 Tbd_0406 PF00573 Ribosomal protein L4/L1 family Tbd_0407 PF00276 Ribosomal protein L23 Tbd_0408 PF00181 Ribosomal Proteins L2, RNA binding domain Tbd_0408 PF03947 Ribosomal Proteins L2, C-terminal domain Tbd_0409 PF00203 Ribosomal protein S19 Tbd_0410 PF00237 Ribosomal protein L22p/L17e Tbd_0411 PF00189 Ribosomal protein S3, C-terminal domain Tbd_0411 PF07650 KH domain Tbd_0412 PF00252 Ribosomal protein L16p/L10e Tbd_0413 PF00831 Ribosomal L29 protein Tbd_0414 PF00366 Ribosomal protein S17 Tbd_0415 PF00238 Ribosomal protein L14p/L23e Tbd_0416 PF00467 KOW motif Tbd_0416 PF17136 Tbd_0416 Tbd_0417 PF00281 Ribosomal protein L5 Tbd_0417 PF00673 ribosomal L5P family C-terminus Tbd_0418 PF00253 Ribosomal protein S14p/S29e Tbd_0419 PF00410 Ribosomal protein S8 Tbd_0420 PF00347 Ribosomal protein L6 Tbd_0421 PF00861 Ribosomal L18p/L5e family Tbd_0422 PF00333 Ribosomal protein S5, N-terminal domain Tbd_0422 PF03719 Ribosomal protein S5, C-terminal domain Tbd_0423 PF00327 Ribosomal protein L30p/L7e Tbd_0424 PF00828 Ribosomal protein L18e/L15 Tbd_0425 PF00344 SecY translocase Tbd_0426 PF01176 Translation initiation factor 1A / IF-1 Tbd_0427 PF00416 Ribosomal protein S13/S18 Tbd_0428 PF00411 Ribosomal protein S11 Tbd_0429 PF00163 Ribosomal protein S4/S9 N-terminal domain Tbd_0429 PF01479 S4 domain Tbd_0430 PF01000 RNA polymerase Rpb3/RpoA insert domain Tbd_0430 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tbd_0430 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tbd_0431 PF01196 Ribosomal protein L17 Tbd_0432 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase Tbd_0433 PF05161 MOFRL family Tbd_0433 PF13660 Domain of unknown function (DUF4147) Tbd_0435 PF00849 RNA pseudouridylate synthase Tbd_0435 PF01479 S4 domain Tbd_0437 PF07690 Major Facilitator Superfamily Tbd_0438 PF00436 Single-strand binding protein family Tbd_0439 PF00593 TonB dependent receptor Tbd_0439 PF07715 TonB-dependent Receptor Plug Domain Tbd_0440 PF09723 Tbd_0440 Tbd_0441 PF04367 Tbd_0441 Tbd_0442 PF00152 tRNA synthetases class II (D, K and N) Tbd_0442 PF01336 OB-fold nucleic acid binding domain Tbd_0442 PF02938 GAD domain Tbd_0443 PF10084 Tbd_0443 Tbd_0444 PF00293 NUDIX domain Tbd_0445 PF03372 Endonuclease/Exonuclease/phosphatase family Tbd_0446 PF13091 PLD-like domain Tbd_0447 PF04228 Tbd_0447 Tbd_0448 PF13609 Gram-negative porin Tbd_0450 PF10049 Tbd_0450 Tbd_0451 PF02566 OsmC-like protein Tbd_0452 PF02698 DUF218 domain Tbd_0453 PF00572 Ribosomal protein L13 Tbd_0454 PF00380 Ribosomal protein S9/S16 Tbd_0455 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tbd_0455 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tbd_0456 PF01521 Iron-sulphur cluster biosynthesis Tbd_0457 PF03702 Uncharacterised protein family (UPF0075) Tbd_0458 PF01551 Peptidase family M23 Tbd_0459 PF00579 tRNA synthetases class I (W and Y) Tbd_0459 PF01479 S4 domain Tbd_0460 PF02237 Biotin protein ligase C terminal domain Tbd_0460 PF03099 Biotin/lipoate A/B protein ligase family Tbd_0460 PF08279 HTH domain Tbd_0461 PF03309 Type III pantothenate kinase Tbd_0463 PF01040 UbiA prenyltransferase family Tbd_0464 PF04345 Chorismate lyase Tbd_0465 PF16811 Tbd_0465 Tbd_0466 PF03480 Bacterial extracellular solute-binding protein, family 7 Tbd_0467 PF04290 Tbd_0467 Tbd_0468 PF06808 Tbd_0468 Tbd_0469 PF00270 DEAD/DEAH box helicase Tbd_0469 PF00271 Helicase conserved C-terminal domain Tbd_0469 PF17191 Tbd_0469 Tbd_0470 PF01042 Endoribonuclease L-PSP Tbd_0471 PF02824 TGS domain Tbd_0471 PF04607 Region found in RelA / SpoT proteins Tbd_0471 PF13291 ACT domain Tbd_0471 PF13328 HD domain Tbd_0472 PF01192 RNA polymerase Rpb6 Tbd_0473 PF00625 Guanylate kinase Tbd_0474 PF03755 Tbd_0474 Tbd_0474 PF08340 Tbd_0474 Tbd_0475 PF00069 Protein kinase domain Tbd_0476 PF13672 Protein phosphatase 2C Tbd_0477 PF01138 3' exoribonuclease family, domain 1 Tbd_0477 PF03725 3' exoribonuclease family, domain 2 Tbd_0478 PF01725 Ham1 family Tbd_0479 PF04055 Radical SAM superfamily Tbd_0479 PF06969 HemN C-terminal domain Tbd_0480 PF01738 Dienelactone hydrolase family Tbd_0481 PF01227 GTP cyclohydrolase I Tbd_0482 PF00440 Bacterial regulatory proteins, tetR family Tbd_0482 PF16925 Tbd_0482 Tbd_0483 PF13474 SnoaL-like domain Tbd_0484 PF04191 Phospholipid methyltransferase Tbd_0485 PF02627 Carboxymuconolactone decarboxylase family Tbd_0487 PF00990 GGDEF domain Tbd_0488 PF01026 TatD related DNase Tbd_0489 PF01027 Inhibitor of apoptosis-promoting Bax1 Tbd_0490 PF01145 SPFH domain / Band 7 family Tbd_0491 PF01957 NfeD-like C-terminal, partner-binding Tbd_0492 PF03334 Tbd_0492 Tbd_0493 PF04066 Tbd_0493 Tbd_0494 PF01899 Tbd_0494 Tbd_0495 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tbd_0496 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Tbd_0497 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tbd_0497 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tbd_0497 PF04039 Tbd_0497 Tbd_0497 PF13244 Tbd_0497 Tbd_0498 PF00158 Sigma-54 interaction domain Tbd_0498 PF02954 Bacterial regulatory protein, Fis family Tbd_0499 PF00924 Mechanosensitive ion channel Tbd_0500 PF00999 Sodium/hydrogen exchanger family Tbd_0500 PF03471 Transporter associated domain Tbd_0501 PF01699 Sodium/calcium exchanger protein Tbd_0502 PF00122 E1-E2 ATPase Tbd_0502 PF00689 Cation transporting ATPase, C-terminus Tbd_0502 PF00690 Cation transporter/ATPase, N-terminus Tbd_0502 PF00702 haloacid dehalogenase-like hydrolase Tbd_0503 PF03710 Glutamate-ammonia ligase adenylyltransferase Tbd_0503 PF08335 GlnD PII-uridylyltransferase Tbd_0504 PF00501 AMP-binding enzyme Tbd_0504 PF13193 AMP-binding enzyme C-terminal domain Tbd_0504 PF16177 Tbd_0504 Tbd_0505 PF07589 Tbd_0505 Tbd_0506 PF07589 Tbd_0506 Tbd_0507 PF00082 Subtilase family Tbd_0507 PF12245 Bacterial Ig-like domain (group 3) Tbd_0508 PF03358 NADPH-dependent FMN reductase Tbd_0509 PF01479 S4 domain Tbd_0510 PF13116 Tbd_0510 Tbd_0510 PF13502 Tbd_0510 Tbd_0511 PF00795 Carbon-nitrogen hydrolase Tbd_0512 PF01523 Putative modulator of DNA gyrase Tbd_0513 PF07589 Tbd_0513 Tbd_0514 PF00793 DAHP synthetase I family Tbd_0515 PF12169 DNA polymerase III subunits gamma and tau domain III Tbd_0515 PF12170 DNA polymerase III tau subunit V interacting with alpha Tbd_0515 PF13177 DNA polymerase III, delta subunit Tbd_0516 PF02575 YbaB/EbfC DNA-binding family Tbd_0517 PF02132 RecR protein Tbd_0517 PF13662 Toprim domain Tbd_0518 PF00206 Lyase Tbd_0518 PF08328 Adenylosuccinate lyase C-terminal Tbd_0519 PF00085 Thioredoxin Tbd_0519 PF14559 Tetratricopeptide repeat Tbd_0519 PF14561 Tetratricopeptide repeat Tbd_0520 PF01272 Transcription elongation factor, GreA/GreB, C-term Tbd_0520 PF03449 Transcription elongation factor, N-terminal Tbd_0521 PF11146 Tbd_0521 Tbd_0522 PF00899 ThiF family Tbd_0523 PF07589 Tbd_0523 Tbd_0524 PF01243 Pyridoxamine 5'-phosphate oxidase Tbd_0525 PF02190 ATP-dependent protease La (LON) domain Tbd_0526 PF02441 Flavoprotein Tbd_0527 PF07456 Tbd_0527 Tbd_0528 PF07009 Protein of unknown function (DUF1312) Tbd_0529 PF03668 Tbd_0529 Tbd_0530 PF02603 HPr Serine kinase N terminus Tbd_0530 PF07475 HPr Serine kinase C-terminal domain Tbd_0531 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tbd_0532 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tbd_0533 PF00309 Tbd_0533 Tbd_0533 PF04552 Sigma-54, DNA binding domain Tbd_0533 PF04963 Sigma-54 factor, core binding domain Tbd_0534 PF00005 ABC transporter Tbd_0535 PF03968 OstA-like protein Tbd_0536 PF06835 Lipopolysaccharide-assembly, LptC-related Tbd_0537 PF08282 haloacid dehalogenase-like hydrolase Tbd_0538 PF00571 CBS domain Tbd_0538 PF01380 SIS domain Tbd_0539 PF00999 Sodium/hydrogen exchanger family Tbd_0539 PF02080 TrkA-C domain Tbd_0539 PF02254 TrkA-N domain Tbd_0540 PF07963 Prokaryotic N-terminal methylation motif Tbd_0542 PF07963 Prokaryotic N-terminal methylation motif Tbd_0546 PF00482 Type II secretion system (T2SS), protein F Tbd_0547 PF00437 Type II/IV secretion system protein Tbd_0547 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_0549 PF00263 Tbd_0549 Tbd_0550 PF05036 Sporulation related domain Tbd_0550 PF13401 AAA domain Tbd_0551 PF00072 Response regulator receiver domain Tbd_0551 PF00158 Sigma-54 interaction domain Tbd_0551 PF02954 Bacterial regulatory protein, Fis family Tbd_0553 PF01411 tRNA synthetases class II (A) Tbd_0553 PF02272 DHHA1 domain Tbd_0553 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tbd_0555 PF00092 von Willebrand factor type A domain Tbd_0556 PF12801 Tbd_0556 Tbd_0558 PF07728 AAA domain (dynein-related subfamily) Tbd_0558 PF08406 Tbd_0558 Tbd_0559 PF03626 Tbd_0559 Tbd_0560 PF00510 Cytochrome c oxidase subunit III Tbd_0561 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0562 PF00034 Cytochrome c Tbd_0563 PF02872 5'-nucleotidase, C-terminal domain Tbd_0565 PF08770 Sulphur oxidation protein SoxZ Tbd_0566 PF13501 Sulfur oxidation protein SoxY Tbd_0567 PF00034 Cytochrome c Tbd_0568 PF01435 Peptidase family M48 Tbd_0569 PF01967 MoaC family Tbd_0570 PF00384 Molybdopterin oxidoreductase Tbd_0570 PF01568 Molydopterin dinucleotide binding domain Tbd_0570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Tbd_0571 PF13247 4Fe-4S dicluster domain Tbd_0572 PF04976 Tbd_0572 Tbd_0573 PF00581 Rhodanese-like domain Tbd_0574 PF01206 Sulfurtransferase TusA Tbd_0575 PF13686 DsrE/DsrF/DrsH-like family Tbd_0576 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tbd_0577 PF00133 tRNA synthetases class I (I, L, M and V) Tbd_0577 PF08264 Anticodon-binding domain of tRNA Tbd_0577 PF10458 Valyl tRNA synthetase tRNA binding arm Tbd_0579 PF04364 DNA polymerase III chi subunit, HolC Tbd_0580 PF00883 Cytosol aminopeptidase family, catalytic domain Tbd_0580 PF02789 Cytosol aminopeptidase family, N-terminal domain Tbd_0581 PF03739 Tbd_0581 Tbd_0582 PF03739 Tbd_0582 Tbd_0583 PF04305 Tbd_0583 Tbd_0585 PF08007 Cupin superfamily protein Tbd_0586 PF00578 AhpC/TSA family Tbd_0587 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_0588 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Tbd_0589 PF01171 PP-loop family Tbd_0589 PF09179 TilS substrate binding domain Tbd_0589 PF11734 TilS substrate C-terminal domain Tbd_0590 PF00334 Nucleoside diphosphate kinase Tbd_0591 PF04055 Radical SAM superfamily Tbd_0592 PF13181 Tetratricopeptide repeat Tbd_0592 PF14559 Tetratricopeptide repeat Tbd_0593 PF13413 Helix-turn-helix domain Tbd_0593 PF13464 Tbd_0593 Tbd_0594 PF04551 GcpE protein Tbd_0595 PF03129 Anticodon binding domain Tbd_0595 PF13393 Histidyl-tRNA synthetase Tbd_0596 PF09976 Tetratricopeptide repeat Tbd_0597 PF13360 PQQ-like domain Tbd_0598 PF01926 50S ribosome-binding GTPase Tbd_0598 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tbd_0601 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tbd_0602 PF01926 50S ribosome-binding GTPase Tbd_0602 PF13167 Tbd_0602 Tbd_0602 PF16360 Tbd_0602 Tbd_0603 PF01145 SPFH domain / Band 7 family Tbd_0603 PF12221 Tbd_0603 Tbd_0604 PF01145 SPFH domain / Band 7 family Tbd_0605 PF09838 Tbd_0605 Tbd_0606 PF13393 Histidyl-tRNA synthetase Tbd_0607 PF00709 Adenylosuccinate synthetase Tbd_0608 PF00575 S1 RNA binding domain Tbd_0608 PF00773 RNB domain Tbd_0608 PF08206 Ribonuclease B OB domain Tbd_0609 PF00588 SpoU rRNA Methylase family Tbd_0609 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tbd_0611 PF01163 RIO1 family Tbd_0612 PF02624 YcaO-like family Tbd_0613 PF13414 TPR repeat Tbd_0614 PF00534 Glycosyl transferases group 1 Tbd_0615 PF00588 SpoU rRNA Methylase family Tbd_0616 PF00563 EAL domain Tbd_0616 PF00990 GGDEF domain Tbd_0617 PF03618 Tbd_0617 Tbd_0618 PF00391 PEP-utilising enzyme, mobile domain Tbd_0618 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tbd_0618 PF02896 PEP-utilising enzyme, TIM barrel domain Tbd_0619 PF00117 Glutamine amidotransferase class-I Tbd_0619 PF06418 CTP synthase N-terminus Tbd_0620 PF00793 DAHP synthetase I family Tbd_0621 PF00113 Enolase, C-terminal TIM barrel domain Tbd_0621 PF03952 Enolase, N-terminal domain Tbd_0622 PF04977 Septum formation initiator Tbd_0623 PF04354 ZipA, C-terminal FtsZ-binding domain Tbd_0624 PF00533 BRCA1 C Terminus (BRCT) domain Tbd_0624 PF01653 NAD-dependent DNA ligase adenylation domain Tbd_0624 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Tbd_0624 PF03120 NAD-dependent DNA ligase OB-fold domain Tbd_0624 PF12826 Helix-hairpin-helix motif Tbd_0624 PF14520 Helix-hairpin-helix domain Tbd_0625 PF00483 Nucleotidyl transferase Tbd_0626 PF01256 Carbohydrate kinase Tbd_0626 PF03853 YjeF-related protein N-terminus Tbd_0627 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Tbd_0628 PF11809 Tbd_0628 Tbd_0629 PF02769 AIR synthase related protein, C-terminal domain Tbd_0629 PF13507 CobB/CobQ-like glutamine amidotransferase domain Tbd_0630 PF00311 Phosphoenolpyruvate carboxylase Tbd_0632 PF03176 MMPL family Tbd_0634 PF17131 Tbd_0634 Tbd_0635 PF04055 Radical SAM superfamily Tbd_0635 PF06969 HemN C-terminal domain Tbd_0636 PF00990 GGDEF domain Tbd_0636 PF05231 Tbd_0636 Tbd_0638 PF05751 Tbd_0638 Tbd_0639 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Tbd_0639 PF12801 Tbd_0639 Tbd_0639 PF13746 4Fe-4S dicluster domain Tbd_0640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0640 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Tbd_0641 PF05545 Tbd_0641 Tbd_0642 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Tbd_0643 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0644 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Tbd_0644 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Tbd_0645 PF01180 Dihydroorotate dehydrogenase Tbd_0646 PF00375 Sodium:dicarboxylate symporter family Tbd_0647 PF00768 D-alanyl-D-alanine carboxypeptidase Tbd_0647 PF07943 Penicillin-binding protein 5, C-terminal domain Tbd_0648 PF09851 Tbd_0648 Tbd_0650 PF04214 Tbd_0650 Tbd_0651 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Tbd_0652 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Tbd_0652 PF00364 Biotin-requiring enzyme Tbd_0652 PF02817 e3 binding domain Tbd_0652 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_0652 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_0653 PF05635 23S rRNA-intervening sequence protein Tbd_0654 PF02779 Transketolase, pyrimidine binding domain Tbd_0654 PF02780 Transketolase, C-terminal domain Tbd_0655 PF00676 Dehydrogenase E1 component Tbd_0656 PF00883 Cytosol aminopeptidase family, catalytic domain Tbd_0657 PF02627 Carboxymuconolactone decarboxylase family Tbd_0658 PF00849 RNA pseudouridylate synthase Tbd_0659 PF00080 Copper/zinc superoxide dismutase (SODC) Tbd_0660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_0660 PF00672 HAMP domain Tbd_0660 PF12729 Tbd_0660 Tbd_0661 PF02635 DsrE/DsrF-like family Tbd_0662 PF00205 Thiamine pyrophosphate enzyme, central domain Tbd_0662 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_0662 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tbd_0663 PF02308 Tbd_0663 Tbd_0664 PF00571 CBS domain Tbd_0665 PF00923 Transaldolase Tbd_0666 PF01264 Chorismate synthase Tbd_0667 PF04339 Tbd_0667 Tbd_0668 PF01168 Alanine racemase, N-terminal domain Tbd_0669 PF00155 Aminotransferase class I and II Tbd_0670 PF00196 Bacterial regulatory proteins, luxR family Tbd_0671 PF00211 Adenylate and Guanylate cyclase catalytic domain Tbd_0671 PF00672 HAMP domain Tbd_0672 PF01381 Helix-turn-helix Tbd_0673 PF05015 Plasmid maintenance system killer protein Tbd_0674 PF07690 Major Facilitator Superfamily Tbd_0675 PF04230 Tbd_0675 Tbd_0676 PF05362 Lon protease (S16) C-terminal proteolytic domain Tbd_0676 PF13654 AAA domain Tbd_0677 PF04073 Aminoacyl-tRNA editing domain Tbd_0678 PF13650 Aspartyl protease Tbd_0679 PF00313 'Cold-shock' DNA-binding domain Tbd_0680 PF07152 YaeQ protein Tbd_0682 PF13679 Tbd_0682 Tbd_0683 PF00581 Rhodanese-like domain Tbd_0684 PF02687 Tbd_0684 Tbd_0684 PF12704 MacB-like periplasmic core domain Tbd_0685 PF00005 ABC transporter Tbd_0686 PF13472 GDSL-like Lipase/Acylhydrolase family Tbd_0687 PF02810 SEC-C motif Tbd_0688 PF01243 Pyridoxamine 5'-phosphate oxidase Tbd_0689 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tbd_0689 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tbd_0690 PF13419 Haloacid dehalogenase-like hydrolase Tbd_0691 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tbd_0693 PF00013 KH domain Tbd_0693 PF00575 S1 RNA binding domain Tbd_0693 PF01138 3' exoribonuclease family, domain 1 Tbd_0693 PF03725 3' exoribonuclease family, domain 2 Tbd_0693 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tbd_0694 PF00312 Ribosomal protein S15 Tbd_0695 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tbd_0695 PF09157 Pseudouridine synthase II TruB, C-terminal Tbd_0695 PF16198 Tbd_0695 Tbd_0696 PF02033 Ribosome-binding factor A Tbd_0697 PF00009 Elongation factor Tu GTP binding domain Tbd_0697 PF04760 Translation initiation factor IF-2, N-terminal region Tbd_0697 PF08364 Tbd_0697 Tbd_0697 PF11987 Translation-initiation factor 2 Tbd_0698 PF00575 S1 RNA binding domain Tbd_0698 PF08529 NusA N-terminal domain Tbd_0698 PF13184 NusA-like KH domain Tbd_0698 PF14520 Helix-hairpin-helix domain Tbd_0699 PF02576 Uncharacterised BCR, YhbC family COG0779 Tbd_0699 PF17384 Tbd_0699 Tbd_0700 PF01066 CDP-alcohol phosphatidyltransferase Tbd_0701 PF01541 GIY-YIG catalytic domain Tbd_0701 PF02151 UvrB/uvrC motif Tbd_0701 PF08459 UvrC Helix-hairpin-helix N-terminal Tbd_0701 PF14520 Helix-hairpin-helix domain Tbd_0702 PF01361 Tautomerase enzyme Tbd_0703 PF03167 Uracil DNA glycosylase superfamily Tbd_0704 PF00210 Ferritin-like domain Tbd_0705 PF04324 BFD-like [2Fe-2S] binding domain Tbd_0706 PF07396 Phosphate-selective porin O and P Tbd_0708 PF02424 ApbE family Tbd_0709 PF04205 FMN-binding domain Tbd_0711 PF02472 Biopolymer transport protein ExbD/TolR Tbd_0712 PF01618 Tbd_0712 Tbd_0713 PF03544 Gram-negative bacterial TonB protein C-terminal Tbd_0714 PF03413 Peptidase propeptide and YPEB domain Tbd_0714 PF03929 Tbd_0714 Tbd_0715 PF00593 TonB dependent receptor Tbd_0715 PF07715 TonB-dependent Receptor Plug Domain Tbd_0716 PF03328 HpcH/HpaI aldolase/citrate lyase family Tbd_0717 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tbd_0717 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tbd_0718 PF04183 IucA / IucC family Tbd_0718 PF06276 Ferric iron reductase FhuF-like transporter Tbd_0719 PF07690 Major Facilitator Superfamily Tbd_0720 PF04183 IucA / IucC family Tbd_0720 PF06276 Ferric iron reductase FhuF-like transporter Tbd_0721 PF02655 ATP-grasp domain Tbd_0722 PF00593 TonB dependent receptor Tbd_0722 PF07715 TonB-dependent Receptor Plug Domain Tbd_0723 PF00034 Cytochrome c Tbd_0723 PF03239 Tbd_0723 Tbd_0725 PF10636 Hemin uptake protein hemP Tbd_0726 PF01545 Cation efflux family Tbd_0727 PF00933 Glycosyl hydrolase family 3 N terminal domain Tbd_0728 PF01648 4'-phosphopantetheinyl transferase superfamily Tbd_0730 PF00158 Sigma-54 interaction domain Tbd_0730 PF02954 Bacterial regulatory protein, Fis family Tbd_0732 PF00309 Tbd_0732 Tbd_0732 PF04552 Sigma-54, DNA binding domain Tbd_0732 PF04963 Sigma-54 factor, core binding domain Tbd_0733 PF01814 Hemerythrin HHE cation binding domain Tbd_0734 PF00106 short chain dehydrogenase Tbd_0736 PF14063 Tbd_0736 Tbd_0737 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Tbd_0738 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Tbd_0739 PF00005 ABC transporter Tbd_0739 PF00664 ABC transporter transmembrane region Tbd_0740 PF00534 Glycosyl transferases group 1 Tbd_0740 PF13439 Glycosyltransferase Family 4 Tbd_0741 PF13242 HAD-hyrolase-like Tbd_0742 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Tbd_0743 PF00534 Glycosyl transferases group 1 Tbd_0744 PF13628 Tbd_0744 Tbd_0745 PF01028 Eukaryotic DNA topoisomerase I, catalytic core Tbd_0747 PF00293 NUDIX domain Tbd_0747 PF14803 Nudix N-terminal Tbd_0748 PF07728 AAA domain (dynein-related subfamily) Tbd_0749 PF09967 Tbd_0749 Tbd_0749 PF13203 Tbd_0749 Tbd_0750 PF01430 Hsp33 protein Tbd_0752 PF00437 Type II/IV secretion system protein Tbd_0752 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_0753 PF00482 Type II secretion system (T2SS), protein F Tbd_0754 PF07963 Prokaryotic N-terminal methylation motif Tbd_0755 PF07963 Prokaryotic N-terminal methylation motif Tbd_0756 PF07963 Prokaryotic N-terminal methylation motif Tbd_0757 PF07963 Prokaryotic N-terminal methylation motif Tbd_0759 PF01345 Tbd_0759 Tbd_0761 PF05137 Tbd_0761 Tbd_0762 PF04612 Type II secretion system (T2SS), protein M Tbd_0764 PF00263 Tbd_0764 Tbd_0764 PF07655 Tbd_0764 Tbd_0765 PF13401 AAA domain Tbd_0766 PF14559 Tetratricopeptide repeat Tbd_0768 PF00155 Aminotransferase class I and II Tbd_0769 PF06167 Glucose-regulated metallo-peptidase M90 Tbd_0770 PF02646 Tbd_0770 Tbd_0772 PF00009 Elongation factor Tu GTP binding domain Tbd_0772 PF00679 Elongation factor G C-terminus Tbd_0772 PF03144 Elongation factor Tu domain 2 Tbd_0774 PF01152 Bacterial-like globin Tbd_0775 PF01370 NAD dependent epimerase/dehydratase family Tbd_0775 PF02222 ATP-grasp domain Tbd_0776 PF01510 N-acetylmuramoyl-L-alanine amidase Tbd_0777 PF00156 Phosphoribosyl transferase domain Tbd_0778 PF01048 Phosphorylase superfamily Tbd_0779 PF00849 RNA pseudouridylate synthase Tbd_0780 PF01327 Polypeptide deformylase Tbd_0781 PF07309 Tbd_0781 Tbd_0783 PF01909 Nucleotidyltransferase domain Tbd_0783 PF01966 HD domain Tbd_0783 PF08335 GlnD PII-uridylyltransferase Tbd_0784 PF00557 Metallopeptidase family M24 Tbd_0785 PF00318 Ribosomal protein S2 Tbd_0786 PF00889 Elongation factor TS Tbd_0787 PF00696 Amino acid kinase family Tbd_0788 PF01765 Ribosome recycling factor Tbd_0789 PF01255 Putative undecaprenyl diphosphate synthase Tbd_0790 PF01148 Cytidylyltransferase family Tbd_0791 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tbd_0791 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Tbd_0791 PF13288 DXP reductoisomerase C-terminal domain Tbd_0792 PF02163 Peptidase family M50 Tbd_0793 PF01103 Surface antigen Tbd_0793 PF07244 Surface antigen variable number repeat Tbd_0794 PF03938 Outer membrane protein (OmpH-like) Tbd_0795 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_0795 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Tbd_0795 PF14602 Hexapeptide repeat of succinyl-transferase Tbd_0796 PF07977 FabA-like domain Tbd_0797 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_0797 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Tbd_0798 PF02684 Tbd_0798 Tbd_0799 PF01351 Ribonuclease HII Tbd_0800 PF05425 Tbd_0800 Tbd_0801 PF00085 Thioredoxin Tbd_0802 PF01699 Sodium/calcium exchanger protein Tbd_0803 PF00413 Matrixin Tbd_0804 PF04339 Tbd_0804 Tbd_0805 PF00549 CoA-ligase Tbd_0805 PF08442 ATP-grasp domain Tbd_0806 PF00549 CoA-ligase Tbd_0806 PF02629 CoA binding domain Tbd_0807 PF00795 Carbon-nitrogen hydrolase Tbd_0807 PF02540 NAD synthase Tbd_0808 PF00543 Nitrogen regulatory protein P-II Tbd_0809 PF13525 Outer membrane lipoprotein Tbd_0810 PF00849 RNA pseudouridylate synthase Tbd_0811 PF02578 Multi-copper polyphenol oxidoreductase laccase Tbd_0812 PF14743 DNA ligase OB-like domain Tbd_0813 PF00583 Acetyltransferase (GNAT) family Tbd_0814 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Tbd_0814 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Tbd_0815 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_0815 PF02861 Clp amino terminal domain Tbd_0815 PF07724 AAA domain (Cdc48 subfamily) Tbd_0815 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_0816 PF10137 Tbd_0816 Tbd_0818 PF06532 Tbd_0818 Tbd_0822 PF00034 Cytochrome c Tbd_0823 PF00115 Cytochrome C and Quinol oxidase polypeptide I Tbd_0824 PF07728 AAA domain (dynein-related subfamily) Tbd_0824 PF08406 Tbd_0824 Tbd_0827 PF00929 Exonuclease Tbd_0827 PF01541 GIY-YIG catalytic domain Tbd_0828 PF02811 PHP domain Tbd_0828 PF07733 Bacterial DNA polymerase III alpha subunit Tbd_0828 PF14579 Helix-hairpin-helix motif Tbd_0829 PF00817 impB/mucB/samB family Tbd_0830 PF03846 Cell division inhibitor SulA Tbd_0831 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Tbd_0831 PF09363 XFP C-terminal domain Tbd_0831 PF09364 XFP N-terminal domain Tbd_0832 PF00871 Acetokinase family Tbd_0833 PF01103 Surface antigen Tbd_0833 PF17243 Tbd_0833 Tbd_0834 PF04357 Tbd_0834 Tbd_0835 PF01975 Survival protein SurE Tbd_0836 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Tbd_0837 PF01476 LysM domain Tbd_0837 PF01551 Peptidase family M23 Tbd_0838 PF00140 Sigma-70 factor, region 1 Tbd_0838 PF04539 Sigma-70 region 3 Tbd_0838 PF04542 Sigma-70 region 2 Tbd_0838 PF04545 Sigma-70, region 4 Tbd_0839 PF13419 Haloacid dehalogenase-like hydrolase Tbd_0840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0841 PF04430 Protein of unknown function (DUF498/DUF598) Tbd_0842 PF00155 Aminotransferase class I and II Tbd_0843 PF00742 Homoserine dehydrogenase Tbd_0843 PF01842 ACT domain Tbd_0843 PF03447 Homoserine dehydrogenase, NAD binding domain Tbd_0844 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_0844 PF14821 Threonine synthase N terminus Tbd_0845 PF03167 Uracil DNA glycosylase superfamily Tbd_0846 PF13410 Glutathione S-transferase, C-terminal domain Tbd_0846 PF13417 Glutathione S-transferase, N-terminal domain Tbd_0847 PF01625 Peptide methionine sulfoxide reductase Tbd_0849 PF07452 Tbd_0849 Tbd_0849 PF07589 Tbd_0849 Tbd_0850 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tbd_0850 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Tbd_0851 PF03054 tRNA methyl transferase Tbd_0852 PF00293 NUDIX domain Tbd_0853 PF00849 RNA pseudouridylate synthase Tbd_0854 PF00180 Isocitrate/isopropylmalate dehydrogenase Tbd_0855 PF00313 'Cold-shock' DNA-binding domain Tbd_0856 PF10093 Tbd_0856 Tbd_0857 PF01132 Elongation factor P (EF-P) OB domain Tbd_0857 PF08207 Elongation factor P (EF-P) KOW-like domain Tbd_0857 PF09285 Elongation factor P, C-terminal Tbd_0858 PF01336 OB-fold nucleic acid binding domain Tbd_0858 PF02811 PHP domain Tbd_0858 PF07733 Bacterial DNA polymerase III alpha subunit Tbd_0858 PF14579 Helix-hairpin-helix motif Tbd_0859 PF00708 Acylphosphatase Tbd_0860 PF01588 Putative tRNA binding domain Tbd_0860 PF09334 tRNA synthetases class I (M) Tbd_0861 PF06041 Bacterial protein of unknown function (DUF924) Tbd_0862 PF09360 Iron-binding zinc finger CDGSH type Tbd_0863 PF00348 Polyprenyl synthetase Tbd_0864 PF00829 Ribosomal prokaryotic L21 protein Tbd_0865 PF01016 Ribosomal L27 protein Tbd_0866 PF01018 GTP1/OBG Tbd_0866 PF01926 50S ribosome-binding GTPase Tbd_0868 PF13519 von Willebrand factor type A domain Tbd_0869 PF07728 AAA domain (dynein-related subfamily) Tbd_0869 PF08406 Tbd_0869 Tbd_0870 PF13511 Tbd_0870 Tbd_0871 PF03692 Tbd_0871 Tbd_0872 PF00890 FAD binding domain Tbd_0873 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Tbd_0873 PF13187 4Fe-4S dicluster domain Tbd_0874 PF01747 ATP-sulfurylase Tbd_0874 PF14306 PUA-like domain Tbd_0876 PF00117 Glutamine amidotransferase class-I Tbd_0877 PF13975 Tbd_0877 Tbd_0878 PF02649 Type I GTP cyclohydrolase folE2 Tbd_0879 PF02779 Transketolase, pyrimidine binding domain Tbd_0879 PF02780 Transketolase, C-terminal domain Tbd_0879 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tbd_0880 PF00348 Polyprenyl synthetase Tbd_0881 PF02609 Exonuclease VII small subunit Tbd_0882 PF00355 Rieske [2Fe-2S] domain Tbd_0882 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Tbd_0883 PF00892 EamA-like transporter family Tbd_0884 PF11964 SpoIIAA-like Tbd_0885 PF11227 Tbd_0885 Tbd_0886 PF00085 Thioredoxin Tbd_0886 PF14559 Tetratricopeptide repeat Tbd_0886 PF14561 Tetratricopeptide repeat Tbd_0887 PF00561 alpha/beta hydrolase fold Tbd_0889 PF08495 Tbd_0889 Tbd_0889 PF10442 Tbd_0889 Tbd_0891 PF00330 Aconitase family (aconitate hydratase) Tbd_0891 PF00694 Aconitase C-terminal domain Tbd_0893 PF00152 tRNA synthetases class II (D, K and N) Tbd_0893 PF01336 OB-fold nucleic acid binding domain Tbd_0894 PF01850 PIN domain Tbd_0895 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tbd_0896 PF00270 DEAD/DEAH box helicase Tbd_0896 PF00271 Helicase conserved C-terminal domain Tbd_0896 PF00570 HRDC domain Tbd_0896 PF09382 RQC domain Tbd_0896 PF16124 Tbd_0896 Tbd_0898 PF08241 Methyltransferase domain Tbd_0899 PF01433 Peptidase family M1 Tbd_0899 PF11940 Domain of unknown function (DUF3458) Tbd_0899 PF17432 Tbd_0899 Tbd_0900 PF16576 Tbd_0900 Tbd_0901 PF16576 Tbd_0901 Tbd_0902 PF00873 AcrB/AcrD/AcrF family Tbd_0903 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0904 PF00072 Response regulator receiver domain Tbd_0904 PF00158 Sigma-54 interaction domain Tbd_0904 PF02954 Bacterial regulatory protein, Fis family Tbd_0905 PF03625 Domain of unknown function DUF302 Tbd_0906 PF00080 Copper/zinc superoxide dismutase (SODC) Tbd_0908 PF00578 AhpC/TSA family Tbd_0909 PF00593 TonB dependent receptor Tbd_0909 PF07715 TonB-dependent Receptor Plug Domain Tbd_0910 PF03544 Gram-negative bacterial TonB protein C-terminal Tbd_0911 PF01618 Tbd_0911 Tbd_0912 PF02472 Biopolymer transport protein ExbD/TolR Tbd_0913 PF08534 Redoxin Tbd_0916 PF00805 Pentapeptide repeats (8 copies) Tbd_0917 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_0921 PF00472 RF-1 domain Tbd_0921 PF03462 PCRF domain Tbd_0922 PF02308 Tbd_0922 Tbd_0922 PF13194 Tbd_0922 Tbd_0923 PF00723 Glycosyl hydrolases family 15 Tbd_0924 PF13561 Enoyl-(Acyl carrier protein) reductase Tbd_0925 PF02384 N-6 DNA Methylase Tbd_0926 PF13643 Tbd_0926 Tbd_0928 PF00665 Integrase core domain Tbd_0928 PF13276 Tbd_0928 Tbd_0930 PF07042 Tbd_0930 Tbd_0933 PF00176 SNF2 family N-terminal domain Tbd_0933 PF00271 Helicase conserved C-terminal domain Tbd_0934 PF10592 Tbd_0934 Tbd_0936 PF01555 DNA methylase Tbd_0937 PF04851 Type III restriction enzyme, res subunit Tbd_0938 PF12835 Integrase Tbd_0943 PF00589 Phage integrase family Tbd_0943 PF13356 Domain of unknown function (DUF4102) Tbd_0944 PF04247 Tbd_0944 Tbd_0945 PF13419 Haloacid dehalogenase-like hydrolase Tbd_0946 PF13489 Methyltransferase domain Tbd_0947 PF01979 Amidohydrolase family Tbd_0948 PF00521 DNA gyrase/topoisomerase IV, subunit A Tbd_0948 PF03989 DNA gyrase C-terminal domain, beta-propeller Tbd_0949 PF00266 Aminotransferase class-V Tbd_0950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tbd_0950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tbd_0951 PF00800 Prephenate dehydratase Tbd_0951 PF01817 Chorismate mutase type II Tbd_0951 PF01842 ACT domain Tbd_0952 PF00155 Aminotransferase class I and II Tbd_0953 PF02153 Prephenate dehydrogenase Tbd_0954 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tbd_0955 PF02224 Cytidylate kinase Tbd_0956 PF00575 S1 RNA binding domain Tbd_0957 PF00216 Bacterial DNA-binding protein Tbd_0958 PF06305 Tbd_0958 Tbd_0959 PF13432 Tetratricopeptide repeat Tbd_0960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tbd_0961 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Tbd_0961 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Tbd_0961 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tbd_0962 PF00294 pfkB family carbohydrate kinase Tbd_0963 PF01370 NAD dependent epimerase/dehydratase family Tbd_0964 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_0965 PF13481 AAA domain Tbd_0965 PF13541 Subunit ChlI of Mg-chelatase Tbd_0967 PF03631 Tbd_0967 Tbd_0968 PF00009 Elongation factor Tu GTP binding domain Tbd_0968 PF03144 Elongation factor Tu domain 2 Tbd_0968 PF16658 Tbd_0968 Tbd_0969 PF00696 Amino acid kinase family Tbd_0969 PF01842 ACT domain Tbd_0969 PF13840 ACT domain Tbd_0970 PF01938 TRAM domain Tbd_0970 PF05958 tRNA (Uracil-5-)-methyltransferase Tbd_0971 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Tbd_0972 PF08668 HDOD domain Tbd_0973 PF13598 Tbd_0973 Tbd_0974 PF00342 Phosphoglucose isomerase Tbd_0976 PF02036 SCP-2 sterol transfer family Tbd_0978 PF02470 Tbd_0978 Tbd_0980 PF02405 Tbd_0980 Tbd_0981 PF06347 Bacterial SH3 domain Tbd_0982 PF01435 Peptidase family M48 Tbd_0983 PF00211 Adenylate and Guanylate cyclase catalytic domain Tbd_0983 PF05226 Tbd_0983 Tbd_0984 PF12706 Beta-lactamase superfamily domain Tbd_0986 PF03625 Domain of unknown function DUF302 Tbd_0987 PF00072 Response regulator receiver domain Tbd_0987 PF00512 His Kinase A (phospho-acceptor) domain Tbd_0987 PF01627 Hpt domain Tbd_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_0987 PF12729 Tbd_0987 Tbd_0987 PF13188 PAS domain Tbd_0988 PF00005 ABC transporter Tbd_0988 PF08402 TOBE domain Tbd_0989 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_0990 PF13343 Bacterial extracellular solute-binding protein Tbd_0992 PF00877 NlpC/P60 family Tbd_0994 PF01636 Phosphotransferase enzyme family Tbd_0994 PF03109 Tbd_0994 Tbd_0995 PF00563 EAL domain Tbd_0995 PF00990 GGDEF domain Tbd_0996 PF12697 Alpha/beta hydrolase family Tbd_0997 PF13307 Helicase C-terminal domain Tbd_0999 PF00578 AhpC/TSA family Tbd_1000 PF01713 Smr domain Tbd_1001 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1002 PF01580 FtsK/SpoIIIE family Tbd_1002 PF09397 Ftsk gamma domain Tbd_1002 PF13491 Tbd_1002 Tbd_1003 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tbd_1004 PF02542 YgbB family Tbd_1005 PF02834 LigT like Phosphoesterase Tbd_1006 PF00563 EAL domain Tbd_1006 PF00990 GGDEF domain Tbd_1007 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tbd_1007 PF02824 TGS domain Tbd_1007 PF03129 Anticodon binding domain Tbd_1007 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tbd_1008 PF00707 Translation initiation factor IF-3, C-terminal domain Tbd_1008 PF05198 Translation initiation factor IF-3, N-terminal domain Tbd_1009 PF01632 Ribosomal protein L35 Tbd_1010 PF00453 Ribosomal protein L20 Tbd_1011 PF01409 tRNA synthetases class II core domain (F) Tbd_1011 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Tbd_1012 PF01588 Putative tRNA binding domain Tbd_1012 PF03147 Ferredoxin-fold anticodon binding domain Tbd_1012 PF03483 B3/4 domain Tbd_1012 PF03484 tRNA synthetase B5 domain Tbd_1013 PF00216 Bacterial DNA-binding protein Tbd_1014 PF13411 MerR HTH family regulatory protein Tbd_1015 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tbd_1015 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tbd_1019 PF02696 Tbd_1019 Tbd_1020 PF10017 Tbd_1020 Tbd_1021 PF00586 AIR synthase related protein, N-terminal domain Tbd_1021 PF02769 AIR synthase related protein, C-terminal domain Tbd_1022 PF03781 Sulfatase-modifying factor enzyme 1 Tbd_1022 PF12867 DinB superfamily Tbd_1023 PF04055 Radical SAM superfamily Tbd_1023 PF06463 Molybdenum Cofactor Synthesis C Tbd_1023 PF13353 4Fe-4S single cluster domain Tbd_1024 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Tbd_1025 PF00994 Probable molybdopterin binding domain Tbd_1025 PF03453 MoeA N-terminal region (domain I and II) Tbd_1025 PF03454 MoeA C-terminal region (domain IV) Tbd_1026 PF02597 ThiS family Tbd_1027 PF02391 MoaE protein Tbd_1028 PF01047 MarR family Tbd_1029 PF01292 Prokaryotic cytochrome b561 Tbd_1030 PF04264 YceI-like domain Tbd_1031 PF04264 YceI-like domain Tbd_1032 PF04264 YceI-like domain Tbd_1033 PF01136 Tbd_1033 Tbd_1033 PF12392 Tbd_1033 Tbd_1034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_1035 PF03625 Domain of unknown function DUF302 Tbd_1036 PF02537 Tbd_1036 Tbd_1037 PF02641 Uncharacterized ACR, COG1993 Tbd_1038 PF01925 Tbd_1038 Tbd_1039 PF00072 Response regulator receiver domain Tbd_1039 PF00990 GGDEF domain Tbd_1041 PF00753 Metallo-beta-lactamase superfamily Tbd_1042 PF00563 EAL domain Tbd_1042 PF00990 GGDEF domain Tbd_1042 PF08448 PAS fold Tbd_1042 PF13185 GAF domain Tbd_1042 PF13426 PAS domain Tbd_1044 PF03186 Tbd_1044 Tbd_1045 PF07670 Nucleoside recognition Tbd_1046 PF02541 Ppx/GppA phosphatase family Tbd_1047 PF02353 Mycolic acid cyclopropane synthetase Tbd_1049 PF06983 3-demethylubiquinone-9 3-methyltransferase Tbd_1050 PF13410 Glutathione S-transferase, C-terminal domain Tbd_1050 PF13417 Glutathione S-transferase, N-terminal domain Tbd_1051 PF13091 PLD-like domain Tbd_1053 PF02635 DsrE/DsrF-like family Tbd_1055 PF13489 Methyltransferase domain Tbd_1056 PF07681 Tbd_1056 Tbd_1057 PF03167 Uracil DNA glycosylase superfamily Tbd_1058 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Tbd_1059 PF13649 Methyltransferase domain Tbd_1061 PF00563 EAL domain Tbd_1061 PF13185 GAF domain Tbd_1062 PF14534 Domain of unknown function (DUF4440) Tbd_1063 PF11373 Tbd_1063 Tbd_1064 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Tbd_1068 PF09413 Domain of unknown function (DUF2007) Tbd_1072 PF07731 Multicopper oxidase Tbd_1076 PF13847 Methyltransferase domain Tbd_1077 PF04326 Divergent AAA domain Tbd_1077 PF13749 ATP-dependent DNA helicase recG C-terminal Tbd_1078 PF00183 Hsp90 protein Tbd_1078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1079 PF06348 Tbd_1079 Tbd_1080 PF13439 Glycosyltransferase Family 4 Tbd_1080 PF13692 Glycosyl transferases group 1 Tbd_1081 PF00149 Calcineurin-like phosphoesterase Tbd_1082 PF12698 ABC-2 family transporter protein Tbd_1083 PF00005 ABC transporter Tbd_1084 PF13437 HlyD family secretion protein Tbd_1085 PF02503 Polyphosphate kinase middle domain Tbd_1085 PF13089 Polyphosphate kinase N-terminal domain Tbd_1085 PF13090 Polyphosphate kinase C-terminal domain Tbd_1086 PF01928 CYTH domain Tbd_1086 PF05235 CHAD domain Tbd_1087 PF00300 Histidine phosphatase superfamily (branch 1) Tbd_1088 PF01514 Secretory protein of YscJ/FliF family Tbd_1088 PF08345 Tbd_1088 Tbd_1089 PF01706 FliG C-terminal domain Tbd_1089 PF14841 FliG middle domain Tbd_1089 PF14842 FliG N-terminal domain Tbd_1090 PF02108 Tbd_1090 Tbd_1091 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_1092 PF02050 Flagellar FliJ protein Tbd_1094 PF04347 Tbd_1094 Tbd_1095 PF00813 Tbd_1095 Tbd_1096 PF01313 Tbd_1096 Tbd_1097 PF01311 Tbd_1097 Tbd_1098 PF00701 Dihydrodipicolinate synthetase family Tbd_1099 PF06804 NlpB/DapX lipoprotein Tbd_1100 PF12706 Beta-lactamase superfamily domain Tbd_1101 PF00270 DEAD/DEAH box helicase Tbd_1101 PF00271 Helicase conserved C-terminal domain Tbd_1102 PF11743 Tbd_1102 Tbd_1103 PF00753 Metallo-beta-lactamase superfamily Tbd_1104 PF00175 Oxidoreductase NAD-binding domain Tbd_1104 PF00970 Oxidoreductase FAD-binding domain Tbd_1105 PF01641 SelR domain Tbd_1106 PF02915 Rubrerythrin Tbd_1107 PF02754 Tbd_1107 Tbd_1108 PF12007 Protein of unknown function (DUF3501) Tbd_1109 PF02353 Mycolic acid cyclopropane synthetase Tbd_1110 PF13432 Tetratricopeptide repeat Tbd_1110 PF13529 Peptidase_C39 like family Tbd_1112 PF02678 Pirin Tbd_1112 PF05726 Pirin C-terminal cupin domain Tbd_1113 PF10861 Tbd_1113 Tbd_1114 PF01545 Cation efflux family Tbd_1114 PF16916 Tbd_1114 Tbd_1115 PF03458 Tbd_1115 Tbd_1116 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_1116 PF03466 LysR substrate binding domain Tbd_1117 PF02525 Flavodoxin-like fold Tbd_1118 PF02678 Pirin Tbd_1118 PF05726 Pirin C-terminal cupin domain Tbd_1119 PF08750 Tbd_1119 Tbd_1120 PF00696 Amino acid kinase family Tbd_1120 PF01472 PUA domain Tbd_1121 PF00300 Histidine phosphatase superfamily (branch 1) Tbd_1122 PF01497 Periplasmic binding protein Tbd_1123 PF01475 Ferric uptake regulator family Tbd_1124 PF04355 SmpA / OmlA family Tbd_1125 PF01113 Dihydrodipicolinate reductase, N-terminus Tbd_1125 PF05173 Dihydrodipicolinate reductase, C-terminus Tbd_1126 PF00462 Glutaredoxin Tbd_1127 PF00117 Glutamine amidotransferase class-I Tbd_1127 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tbd_1128 PF02142 MGS-like domain Tbd_1128 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tbd_1128 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tbd_1129 PF01272 Transcription elongation factor, GreA/GreB, C-term Tbd_1129 PF03449 Transcription elongation factor, N-terminal Tbd_1130 PF13664 Tbd_1130 Tbd_1131 PF01985 CRS1 / YhbY (CRM) domain Tbd_1132 PF01728 FtsJ-like methyltransferase Tbd_1133 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1133 PF01434 Peptidase family M41 Tbd_1133 PF06480 FtsH Extracellular Tbd_1134 PF00809 Pterin binding enzyme Tbd_1135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tbd_1135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tbd_1135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tbd_1135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tbd_1136 PF12849 PBP superfamily domain Tbd_1137 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1138 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1139 PF00005 ABC transporter Tbd_1140 PF00121 Triosephosphate isomerase Tbd_1141 PF03840 Preprotein translocase SecG subunit Tbd_1142 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tbd_1143 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tbd_1144 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Tbd_1145 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Tbd_1146 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Tbd_1147 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tbd_1147 PF10531 SLBB domain Tbd_1147 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tbd_1148 PF00384 Molybdopterin oxidoreductase Tbd_1148 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tbd_1148 PF13510 2Fe-2S iron-sulfur cluster binding domain Tbd_1149 PF00146 NADH dehydrogenase Tbd_1150 PF12838 4Fe-4S dicluster domain Tbd_1151 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Tbd_1152 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Tbd_1153 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tbd_1153 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tbd_1154 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tbd_1154 PF01059 Tbd_1154 Tbd_1155 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tbd_1156 PF10993 Tbd_1156 Tbd_1157 PF13275 S4 domain Tbd_1159 PF00488 MutS domain V Tbd_1159 PF01624 MutS domain I Tbd_1159 PF05188 MutS domain II Tbd_1159 PF05190 MutS family domain IV Tbd_1159 PF05192 MutS domain III Tbd_1160 PF00459 Inositol monophosphatase family Tbd_1161 PF00588 SpoU rRNA Methylase family Tbd_1162 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_1162 PF06426 Serine acetyltransferase, N-terminal Tbd_1163 PF02082 Transcriptional regulator Tbd_1164 PF00266 Aminotransferase class-V Tbd_1165 PF01592 NifU-like N terminal domain Tbd_1166 PF01521 Iron-sulphur cluster biosynthesis Tbd_1167 PF00226 DnaJ domain Tbd_1167 PF07743 HSCB C-terminal oligomerisation domain Tbd_1168 PF00012 Hsp70 protein Tbd_1169 PF00111 2Fe-2S iron-sulfur cluster binding domain Tbd_1170 PF04384 Iron-sulphur cluster assembly Tbd_1171 PF01389 OmpA-like transmembrane domain Tbd_1172 PF00128 Alpha amylase, catalytic domain Tbd_1172 PF16657 Tbd_1172 Tbd_1173 PF00128 Alpha amylase, catalytic domain Tbd_1173 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tbd_1173 PF11941 Domain of unknown function (DUF3459) Tbd_1174 PF00128 Alpha amylase, catalytic domain Tbd_1174 PF02446 4-alpha-glucanotransferase Tbd_1175 PF00483 Nucleotidyl transferase Tbd_1176 PF01312 FlhB HrpN YscU SpaS Family Tbd_1177 PF00771 FHIPEP family Tbd_1178 PF00448 SRP54-type protein, GTPase domain Tbd_1180 PF04539 Sigma-70 region 3 Tbd_1180 PF04542 Sigma-70 region 2 Tbd_1180 PF04545 Sigma-70, region 4 Tbd_1181 PF00390 Malic enzyme, N-terminal domain Tbd_1181 PF03949 Malic enzyme, NAD binding domain Tbd_1182 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tbd_1183 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tbd_1184 PF00890 FAD binding domain Tbd_1184 PF02910 Fumarate reductase flavoprotein C-term Tbd_1185 PF13085 2Fe-2S iron-sulfur cluster binding domain Tbd_1185 PF13534 4Fe-4S dicluster domain Tbd_1186 PF03937 Flavinator of succinate dehydrogenase Tbd_1187 PF00285 Citrate synthase Tbd_1188 PF00676 Dehydrogenase E1 component Tbd_1188 PF02779 Transketolase, pyrimidine binding domain Tbd_1188 PF16870 Tbd_1188 Tbd_1189 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Tbd_1189 PF00364 Biotin-requiring enzyme Tbd_1190 PF00005 ABC transporter Tbd_1191 PF00072 Response regulator receiver domain Tbd_1191 PF00563 EAL domain Tbd_1191 PF00990 GGDEF domain Tbd_1191 PF08448 PAS fold Tbd_1191 PF13426 PAS domain Tbd_1192 PF00072 Response regulator receiver domain Tbd_1193 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1193 PF00989 PAS fold Tbd_1193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1193 PF13188 PAS domain Tbd_1195 PF01661 Macro domain Tbd_1196 PF08212 Lipocalin-like domain Tbd_1197 PF13453 Tbd_1197 Tbd_1200 PF00248 Aldo/keto reductase family Tbd_1202 PF00775 Dioxygenase Tbd_1203 PF04343 Tbd_1203 Tbd_1204 PF06983 3-demethylubiquinone-9 3-methyltransferase Tbd_1210 PF07799 Tbd_1210 Tbd_1211 PF14279 Tbd_1211 Tbd_1215 PF00589 Phage integrase family Tbd_1215 PF13495 Phage integrase, N-terminal SAM-like domain Tbd_1216 PF14437 Tbd_1216 Tbd_1217 PF03734 L,D-transpeptidase catalytic domain Tbd_1219 PF01435 Peptidase family M48 Tbd_1220 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_1220 PF14602 Hexapeptide repeat of succinyl-transferase Tbd_1220 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Tbd_1221 PF00155 Aminotransferase class I and II Tbd_1222 PF00892 EamA-like transporter family Tbd_1223 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Tbd_1226 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tbd_1226 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tbd_1227 PF14489 QueF-like protein Tbd_1228 PF02463 RecF/RecN/SMC N terminal domain Tbd_1229 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tbd_1229 PF02403 Seryl-tRNA synthetase N-terminal domain Tbd_1230 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tbd_1230 PF01464 Transglycosylase SLT domain Tbd_1232 PF06798 Tbd_1232 Tbd_1232 PF08298 PrkA AAA domain Tbd_1233 PF04285 Tbd_1233 Tbd_1234 PF04293 Tbd_1234 Tbd_1235 PF00355 Rieske [2Fe-2S] domain Tbd_1235 PF01266 FAD dependent oxidoreductase Tbd_1236 PF02617 ATP-dependent Clp protease adaptor protein ClpS Tbd_1237 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1237 PF02861 Clp amino terminal domain Tbd_1237 PF07724 AAA domain (Cdc48 subfamily) Tbd_1237 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_1239 PF00483 Nucleotidyl transferase Tbd_1239 PF01050 Mannose-6-phosphate isomerase Tbd_1240 PF05247 Flagellar transcriptional activator (FlhD) Tbd_1241 PF05280 Flagellar transcriptional activator (FlhC) Tbd_1243 PF01618 Tbd_1243 Tbd_1244 PF00691 OmpA family Tbd_1244 PF13677 Tbd_1244 Tbd_1245 PF01312 FlhB HrpN YscU SpaS Family Tbd_1246 PF00771 FHIPEP family Tbd_1247 PF00448 SRP54-type protein, GTPase domain Tbd_1248 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_1249 PF04539 Sigma-70 region 3 Tbd_1249 PF04542 Sigma-70 region 2 Tbd_1249 PF04545 Sigma-70, region 4 Tbd_1250 PF01618 Tbd_1250 Tbd_1251 PF00691 OmpA family Tbd_1251 PF13677 Tbd_1251 Tbd_1252 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1252 PF02190 ATP-dependent protease La (LON) domain Tbd_1252 PF05362 Lon protease (S16) C-terminal proteolytic domain Tbd_1253 PF13686 DsrE/DsrF/DrsH-like family Tbd_1254 PF01206 Sulfurtransferase TusA Tbd_1255 PF00440 Bacterial regulatory proteins, tetR family Tbd_1255 PF16925 Tbd_1255 Tbd_1256 PF02616 ScpA/B protein Tbd_1257 PF04079 Putative transcriptional regulators (Ypuh-like) Tbd_1258 PF00849 RNA pseudouridylate synthase Tbd_1258 PF01479 S4 domain Tbd_1259 PF05552 Conserved TM helix Tbd_1260 PF17179 Tbd_1260 Tbd_1261 PF00175 Oxidoreductase NAD-binding domain Tbd_1261 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tbd_1262 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tbd_1263 PF00374 Nickel-dependent hydrogenase Tbd_1265 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tbd_1265 PF00563 EAL domain Tbd_1265 PF00990 GGDEF domain Tbd_1266 PF00593 TonB dependent receptor Tbd_1266 PF07715 TonB-dependent Receptor Plug Domain Tbd_1267 PF13689 Tbd_1267 Tbd_1268 PF00072 Response regulator receiver domain Tbd_1268 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1268 PF01627 Hpt domain Tbd_1268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1268 PF17152 Tbd_1268 Tbd_1269 PF00072 Response regulator receiver domain Tbd_1269 PF00563 EAL domain Tbd_1269 PF00990 GGDEF domain Tbd_1269 PF08448 PAS fold Tbd_1270 PF05175 Methyltransferase small domain Tbd_1271 PF01546 Peptidase family M20/M25/M40 Tbd_1271 PF07687 Peptidase dimerisation domain Tbd_1272 PF03960 ArsC family Tbd_1273 PF00005 ABC transporter Tbd_1273 PF00664 ABC transporter transmembrane region Tbd_1274 PF11700 Tbd_1274 Tbd_1275 PF13673 Acetyltransferase (GNAT) domain Tbd_1276 PF13450 NAD(P)-binding Rossmann-like domain Tbd_1277 PF00990 GGDEF domain Tbd_1278 PF03781 Sulfatase-modifying factor enzyme 1 Tbd_1279 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) Tbd_1280 PF00266 Aminotransferase class-V Tbd_1281 PF03781 Sulfatase-modifying factor enzyme 1 Tbd_1281 PF12867 DinB superfamily Tbd_1282 PF00581 Rhodanese-like domain Tbd_1282 PF00753 Metallo-beta-lactamase superfamily Tbd_1283 PF13531 Bacterial extracellular solute-binding protein Tbd_1284 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1285 PF00005 ABC transporter Tbd_1285 PF03459 TOBE domain Tbd_1286 PF00149 Calcineurin-like phosphoesterase Tbd_1287 PF00072 Response regulator receiver domain Tbd_1287 PF00486 Transcriptional regulatory protein, C terminal Tbd_1288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1289 PF07730 Histidine kinase Tbd_1289 PF08448 PAS fold Tbd_1289 PF13426 PAS domain Tbd_1290 PF00072 Response regulator receiver domain Tbd_1290 PF00196 Bacterial regulatory proteins, luxR family Tbd_1291 PF01436 NHL repeat Tbd_1292 PF00149 Calcineurin-like phosphoesterase Tbd_1292 PF02872 5'-nucleotidase, C-terminal domain Tbd_1293 PF07963 Prokaryotic N-terminal methylation motif Tbd_1293 PF08334 Type II secretion system (T2SS), protein G Tbd_1294 PF00482 Type II secretion system (T2SS), protein F Tbd_1295 PF00437 Type II/IV secretion system protein Tbd_1295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_1297 PF05137 Tbd_1297 Tbd_1300 PF00263 Tbd_1300 Tbd_1301 PF07963 Prokaryotic N-terminal methylation motif Tbd_1302 PF07963 Prokaryotic N-terminal methylation motif Tbd_1304 PF06165 Glycosyltransferase family 36 Tbd_1304 PF10091 Putative glucoamylase Tbd_1304 PF17167 Tbd_1304 Tbd_1305 PF12146 Putative lysophospholipase Tbd_1306 PF13245 Part of AAA domain Tbd_1306 PF13361 UvrD-like helicase C-terminal domain Tbd_1307 PF08895 Tbd_1307 Tbd_1308 PF04343 Tbd_1308 Tbd_1309 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_1309 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_1311 PF04349 Periplasmic glucan biosynthesis protein, MdoG Tbd_1312 PF00535 Glycosyl transferase family 2 Tbd_1313 PF03713 Domain of unknown function (DUF305) Tbd_1318 PF00589 Phage integrase family Tbd_1324 PF00394 Multicopper oxidase Tbd_1324 PF07731 Multicopper oxidase Tbd_1324 PF07732 Multicopper oxidase Tbd_1325 PF05275 Tbd_1325 Tbd_1326 PF11604 Copper binding periplasmic protein CusF Tbd_1327 PF00873 AcrB/AcrD/AcrF family Tbd_1328 PF16576 Tbd_1328 Tbd_1329 PF02321 Outer membrane efflux protein Tbd_1332 PF11604 Copper binding periplasmic protein CusF Tbd_1333 PF00873 AcrB/AcrD/AcrF family Tbd_1334 PF11604 Copper binding periplasmic protein CusF Tbd_1334 PF16576 Tbd_1334 Tbd_1335 PF02321 Outer membrane efflux protein Tbd_1337 PF02694 Tbd_1337 Tbd_1338 PF13411 MerR HTH family regulatory protein Tbd_1339 PF02411 Tbd_1339 Tbd_1340 PF00403 Heavy-metal-associated domain Tbd_1341 PF00403 Heavy-metal-associated domain Tbd_1341 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_1341 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1342 PF09722 Tbd_1342 Tbd_1344 PF13560 Helix-turn-helix domain Tbd_1347 PF01381 Helix-turn-helix Tbd_1347 PF12375 Tbd_1347 Tbd_1351 PF01381 Helix-turn-helix Tbd_1351 PF12375 Tbd_1351 Tbd_1355 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Tbd_1356 PF02321 Outer membrane efflux protein Tbd_1357 PF01322 Cytochrome C' Tbd_1359 PF00005 ABC transporter Tbd_1360 PF02687 Tbd_1360 Tbd_1360 PF12704 MacB-like periplasmic core domain Tbd_1361 PF16576 Tbd_1361 Tbd_1362 PF08359 YsiA-like protein, C-terminal region Tbd_1363 PF01926 50S ribosome-binding GTPase Tbd_1363 PF13167 Tbd_1363 Tbd_1363 PF16360 Tbd_1363 Tbd_1364 PF13532 2OG-Fe(II) oxygenase superfamily Tbd_1365 PF04358 DsrC like protein Tbd_1366 PF00563 EAL domain Tbd_1366 PF00990 GGDEF domain Tbd_1366 PF08448 PAS fold Tbd_1366 PF11127 Protein of unknown function (DUF2892) Tbd_1367 PF04972 BON domain Tbd_1369 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_1369 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_1370 PF00011 Hsp20/alpha crystallin family Tbd_1374 PF04955 Tbd_1374 Tbd_1375 PF00374 Nickel-dependent hydrogenase Tbd_1376 PF02754 Tbd_1376 Tbd_1376 PF13183 4Fe-4S dicluster domain Tbd_1378 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tbd_1378 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Tbd_1379 PF04809 HupH hydrogenase expression protein, C-terminal conserved region Tbd_1380 PF01750 Hydrogenase maturation protease Tbd_1381 PF01455 HupF/HypC family Tbd_1382 PF01155 Hydrogenase expression/synthesis hypA family Tbd_1383 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tbd_1384 PF01924 Hydrogenase formation hypA family Tbd_1385 PF00708 Acylphosphatase Tbd_1385 PF01300 Telomere recombination Tbd_1385 PF07503 HypF finger Tbd_1386 PF00586 AIR synthase related protein, N-terminal domain Tbd_1386 PF02769 AIR synthase related protein, C-terminal domain Tbd_1387 PF09990 Tbd_1387 Tbd_1388 PF00571 CBS domain Tbd_1389 PF13473 Cupredoxin-like domain Tbd_1390 PF04205 FMN-binding domain Tbd_1390 PF12801 Tbd_1390 Tbd_1391 PF05048 Periplasmic copper-binding protein (NosD) Tbd_1392 PF00005 ABC transporter Tbd_1393 PF12679 Tbd_1393 Tbd_1394 PF05573 NosL Tbd_1397 PF05573 NosL Tbd_1398 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_1399 PF00072 Response regulator receiver domain Tbd_1399 PF00196 Bacterial regulatory proteins, luxR family Tbd_1400 PF00672 HAMP domain Tbd_1400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1400 PF07730 Histidine kinase Tbd_1400 PF13492 GAF domain Tbd_1400 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Tbd_1401 PF07690 Major Facilitator Superfamily Tbd_1402 PF07690 Major Facilitator Superfamily Tbd_1403 PF00384 Molybdopterin oxidoreductase Tbd_1403 PF01568 Molydopterin dinucleotide binding domain Tbd_1403 PF14710 Respiratory nitrate reductase alpha N-terminal Tbd_1404 PF13247 4Fe-4S dicluster domain Tbd_1404 PF14711 Respiratory nitrate reductase beta C-terminal Tbd_1405 PF02613 Nitrate reductase delta subunit Tbd_1406 PF02665 Nitrate reductase gamma subunit Tbd_1407 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1408 PF04358 DsrC like protein Tbd_1409 PF05940 Tbd_1409 Tbd_1410 PF01019 Gamma-glutamyltranspeptidase Tbd_1411 PF00990 GGDEF domain Tbd_1411 PF03924 CHASE domain Tbd_1411 PF08447 PAS fold Tbd_1412 PF02687 Tbd_1412 Tbd_1412 PF12704 MacB-like periplasmic core domain Tbd_1413 PF00005 ABC transporter Tbd_1414 PF16576 Tbd_1414 Tbd_1415 PF02321 Outer membrane efflux protein Tbd_1416 PF02321 Outer membrane efflux protein Tbd_1417 PF00873 AcrB/AcrD/AcrF family Tbd_1418 PF13533 Biotin-lipoyl like Tbd_1419 PF00440 Bacterial regulatory proteins, tetR family Tbd_1419 PF13977 Bacterial transcriptional repressor Tbd_1420 PF12849 PBP superfamily domain Tbd_1422 PF00563 EAL domain Tbd_1423 PF05787 Bacterial protein of unknown function (DUF839) Tbd_1424 PF12840 Helix-turn-helix domain Tbd_1425 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tbd_1426 PF01758 Sodium Bile acid symporter family Tbd_1427 PF03773 Tbd_1427 Tbd_1428 PF13847 Methyltransferase domain Tbd_1429 PF13192 Thioredoxin domain Tbd_1430 PF13591 MerR HTH family regulatory protein Tbd_1431 PF00226 DnaJ domain Tbd_1431 PF01556 DnaJ C terminal domain Tbd_1432 PF07963 Prokaryotic N-terminal methylation motif Tbd_1432 PF08334 Type II secretion system (T2SS), protein G Tbd_1433 PF00482 Type II secretion system (T2SS), protein F Tbd_1434 PF00437 Type II/IV secretion system protein Tbd_1434 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_1439 PF00263 Tbd_1439 Tbd_1440 PF07963 Prokaryotic N-terminal methylation motif Tbd_1441 PF07963 Prokaryotic N-terminal methylation motif Tbd_1443 PF01814 Hemerythrin HHE cation binding domain Tbd_1444 PF11154 Tbd_1444 Tbd_1445 PF00011 Hsp20/alpha crystallin family Tbd_1446 PF14520 Helix-hairpin-helix domain Tbd_1446 PF14716 Helix-hairpin-helix domain Tbd_1446 PF14791 DNA polymerase beta thumb Tbd_1447 PF00313 'Cold-shock' DNA-binding domain Tbd_1447 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tbd_1453 PF07478 D-ala D-ala ligase C-terminus Tbd_1453 PF14401 Tbd_1453 Tbd_1454 PF04107 Glutamate-cysteine ligase family 2(GCS2) Tbd_1455 PF05013 N-formylglutamate amidohydrolase Tbd_1456 PF00563 EAL domain Tbd_1456 PF00672 HAMP domain Tbd_1456 PF00990 GGDEF domain Tbd_1456 PF02743 Cache domain Tbd_1456 PF08447 PAS fold Tbd_1456 PF08448 PAS fold Tbd_1456 PF13426 PAS domain Tbd_1458 PF13671 AAA domain Tbd_1459 PF09941 Tbd_1459 Tbd_1460 PF09941 Tbd_1460 Tbd_1461 PF09941 Tbd_1461 Tbd_1462 PF00924 Mechanosensitive ion channel Tbd_1463 PF01176 Translation initiation factor 1A / IF-1 Tbd_1464 PF09587 Bacterial capsule synthesis protein PGA_cap Tbd_1465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tbd_1465 PF14572 Phosphoribosyl synthetase-associated domain Tbd_1468 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Tbd_1469 PF00106 short chain dehydrogenase Tbd_1471 PF01370 NAD dependent epimerase/dehydratase family Tbd_1471 PF03779 Tbd_1471 Tbd_1471 PF07884 Vitamin K epoxide reductase family Tbd_1472 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tbd_1472 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1473 PF03372 Endonuclease/Exonuclease/phosphatase family Tbd_1474 PF00614 Phospholipase D Active site motif Tbd_1474 PF09335 Tbd_1474 Tbd_1474 PF13091 PLD-like domain Tbd_1475 PF12831 FAD dependent oxidoreductase Tbd_1476 PF04230 Tbd_1476 Tbd_1480 PF00563 EAL domain Tbd_1480 PF00989 PAS fold Tbd_1480 PF00990 GGDEF domain Tbd_1480 PF08448 PAS fold Tbd_1481 PF03167 Uracil DNA glycosylase superfamily Tbd_1482 PF01066 CDP-alcohol phosphatidyltransferase Tbd_1483 PF00717 Peptidase S24-like Tbd_1483 PF01726 LexA DNA binding domain Tbd_1484 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_1489 PF01661 Macro domain Tbd_1490 PF14487 Tbd_1490 Tbd_1491 PF01555 DNA methylase Tbd_1492 PF04851 Type III restriction enzyme, res subunit Tbd_1493 PF08808 Tbd_1493 Tbd_1494 PF09722 Tbd_1494 Tbd_1495 PF11871 Tbd_1495 Tbd_1495 PF13487 HD domain Tbd_1496 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1496 PF12002 MgsA AAA+ ATPase C terminal Tbd_1496 PF16193 Tbd_1496 Tbd_1497 PF03548 Outer membrane lipoprotein carrier protein LolA Tbd_1498 PF11127 Protein of unknown function (DUF2892) Tbd_1499 PF11127 Protein of unknown function (DUF2892) Tbd_1500 PF03030 Inorganic H+ pyrophosphatase Tbd_1502 PF00365 Phosphofructokinase Tbd_1504 PF00406 Adenylate kinase Tbd_1504 PF05191 Adenylate kinase, active site lid Tbd_1505 PF02348 Cytidylyltransferase Tbd_1506 PF03966 Trm112p-like protein Tbd_1507 PF00990 GGDEF domain Tbd_1508 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Tbd_1509 PF02472 Biopolymer transport protein ExbD/TolR Tbd_1510 PF01618 Tbd_1510 Tbd_1511 PF02601 Tbd_1511 Tbd_1511 PF13742 Tbd_1511 Tbd_1512 PF01715 IPP transferase Tbd_1513 PF00274 Fructose-bisphosphate aldolase class-I Tbd_1514 PF09411 Lipid A 3-O-deacylase (PagL) Tbd_1516 PF00717 Peptidase S24-like Tbd_1517 PF01119 DNA mismatch repair protein, C-terminal domain Tbd_1517 PF08676 MutL C terminal dimerisation domain Tbd_1517 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1518 PF01814 Hemerythrin HHE cation binding domain Tbd_1519 PF01520 N-acetylmuramoyl-L-alanine amidase Tbd_1519 PF11741 AMIN domain Tbd_1520 PF08331 Tbd_1520 Tbd_1520 PF13484 Tbd_1520 Tbd_1521 PF01545 Cation efflux family Tbd_1522 PF01177 Asp/Glu/Hydantoin racemase Tbd_1523 PF00472 RF-1 domain Tbd_1524 PF07690 Major Facilitator Superfamily Tbd_1525 PF00579 tRNA synthetases class I (W and Y) Tbd_1527 PF01300 Telomere recombination Tbd_1528 PF02811 PHP domain Tbd_1529 PF04279 Tbd_1529 Tbd_1530 PF03795 YCII-related domain Tbd_1531 PF01722 BolA-like protein Tbd_1532 PF13616 PPIC-type PPIASE domain Tbd_1533 PF17209 Tbd_1533 Tbd_1534 PF13231 Tbd_1534 Tbd_1535 PF09335 Tbd_1535 Tbd_1536 PF00535 Glycosyl transferase family 2 Tbd_1537 PF01025 GrpE Tbd_1538 PF00012 Hsp70 protein Tbd_1539 PF00226 DnaJ domain Tbd_1539 PF00684 DnaJ central domain Tbd_1539 PF01556 DnaJ C terminal domain Tbd_1540 PF01026 TatD related DNase Tbd_1541 PF07238 PilZ domain Tbd_1542 PF13177 DNA polymerase III, delta subunit Tbd_1543 PF02223 Thymidylate kinase Tbd_1544 PF02618 YceG-like family Tbd_1545 PF01063 Aminotransferase class IV Tbd_1546 PF00425 chorismate binding enzyme Tbd_1547 PF00109 Beta-ketoacyl synthase, N-terminal domain Tbd_1547 PF02801 Beta-ketoacyl synthase, C-terminal domain Tbd_1548 PF00550 Phosphopantetheine attachment site Tbd_1549 PF13561 Enoyl-(Acyl carrier protein) reductase Tbd_1550 PF00698 Acyl transferase domain Tbd_1551 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Tbd_1551 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Tbd_1552 PF02504 Fatty acid synthesis protein Tbd_1553 PF01783 Ribosomal L32p protein family Tbd_1554 PF02620 Tbd_1554 Tbd_1555 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Tbd_1555 PF02785 Biotin carboxylase C-terminal domain Tbd_1555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tbd_1556 PF00364 Biotin-requiring enzyme Tbd_1556 PF00682 HMGL-like Tbd_1556 PF02436 Conserved carboxylase domain Tbd_1557 PF02545 Maf-like protein Tbd_1558 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tbd_1560 PF01343 Peptidase family S49 Tbd_1561 PF00355 Rieske [2Fe-2S] domain Tbd_1562 PF13419 Haloacid dehalogenase-like hydrolase Tbd_1563 PF00849 RNA pseudouridylate synthase Tbd_1563 PF01479 S4 domain Tbd_1564 PF00575 S1 RNA binding domain Tbd_1564 PF10150 Ribonuclease E/G family Tbd_1565 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tbd_1568 PF00271 Helicase conserved C-terminal domain Tbd_1568 PF02151 UvrB/uvrC motif Tbd_1568 PF04851 Type III restriction enzyme, res subunit Tbd_1568 PF12344 Ultra-violet resistance protein B Tbd_1569 PF00155 Aminotransferase class I and II Tbd_1570 PF00027 Cyclic nucleotide-binding domain Tbd_1570 PF03631 Tbd_1570 Tbd_1571 PF00589 Phage integrase family Tbd_1573 PF12728 Helix-turn-helix domain Tbd_1576 PF01230 HIT domain Tbd_1577 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tbd_1578 PF05977 Transmembrane secretion effector Tbd_1579 PF04457 Tbd_1579 Tbd_1580 PF00156 Phosphoribosyl transferase domain Tbd_1581 PF13437 HlyD family secretion protein Tbd_1582 PF02687 Tbd_1582 Tbd_1583 PF00005 ABC transporter Tbd_1585 PF04055 Radical SAM superfamily Tbd_1585 PF13353 4Fe-4S single cluster domain Tbd_1586 PF01871 AMMECR1 Tbd_1586 PF01875 Memo-like protein Tbd_1587 PF00989 PAS fold Tbd_1587 PF07730 Histidine kinase Tbd_1588 PF00072 Response regulator receiver domain Tbd_1588 PF00196 Bacterial regulatory proteins, luxR family Tbd_1589 PF00990 GGDEF domain Tbd_1590 PF00669 Bacterial flagellin N-terminal helical region Tbd_1590 PF00700 Bacterial flagellin C-terminal helical region Tbd_1591 PF03646 FlaG protein Tbd_1592 PF02465 Tbd_1592 Tbd_1592 PF07195 Tbd_1592 Tbd_1593 PF02561 Flagellar protein FliS Tbd_1594 PF05400 Flagellar protein FliT Tbd_1595 PF02120 Flagellar hook-length control protein FliK Tbd_1596 PF01312 FlhB HrpN YscU SpaS Family Tbd_1597 PF07238 PilZ domain Tbd_1597 PF07317 Flagellar regulator YcgR Tbd_1598 PF00072 Response regulator receiver domain Tbd_1598 PF01584 CheW-like domain Tbd_1599 PF02049 Tbd_1599 Tbd_1600 PF01514 Secretory protein of YscJ/FliF family Tbd_1600 PF08345 Tbd_1600 Tbd_1601 PF01706 FliG C-terminal domain Tbd_1601 PF14841 FliG middle domain Tbd_1601 PF14842 FliG N-terminal domain Tbd_1602 PF02108 Tbd_1602 Tbd_1603 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_1604 PF02050 Flagellar FliJ protein Tbd_1605 PF02120 Flagellar hook-length control protein FliK Tbd_1606 PF03748 Tbd_1606 Tbd_1607 PF01052 Surface presentation of antigens (SPOA) Tbd_1607 PF02154 Flagellar motor switch protein FliM Tbd_1608 PF01052 Surface presentation of antigens (SPOA) Tbd_1609 PF04347 Tbd_1609 Tbd_1610 PF00813 Tbd_1610 Tbd_1611 PF01313 Tbd_1611 Tbd_1612 PF01311 Tbd_1612 Tbd_1613 PF04344 Chemotaxis phosphatase, CheZ Tbd_1614 PF00072 Response regulator receiver domain Tbd_1615 PF00072 Response regulator receiver domain Tbd_1615 PF01339 CheB methylesterase Tbd_1616 PF03975 CheD chemotactic sensory transduction Tbd_1617 PF01739 CheR methyltransferase, SAM binding domain Tbd_1617 PF03705 CheR methyltransferase, all-alpha domain Tbd_1618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1618 PF08447 PAS fold Tbd_1619 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1620 PF00672 HAMP domain Tbd_1620 PF12729 Tbd_1620 Tbd_1621 PF02872 5'-nucleotidase, C-terminal domain Tbd_1622 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_1622 PF00672 HAMP domain Tbd_1622 PF02203 Tar ligand binding domain homologue Tbd_1623 PF01584 CheW-like domain Tbd_1624 PF01584 CheW-like domain Tbd_1624 PF01627 Hpt domain Tbd_1624 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1624 PF02895 Signal transducing histidine kinase, homodimeric domain Tbd_1624 PF09078 CheY binding Tbd_1625 PF00072 Response regulator receiver domain Tbd_1627 PF00669 Bacterial flagellin N-terminal helical region Tbd_1628 PF00460 Flagella basal body rod protein Tbd_1628 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1629 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Tbd_1629 PF10135 Tbd_1629 Tbd_1630 PF02119 Tbd_1630 Tbd_1631 PF02107 Tbd_1631 Tbd_1632 PF00460 Flagella basal body rod protein Tbd_1632 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1633 PF00460 Flagella basal body rod protein Tbd_1633 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1634 PF00460 Flagella basal body rod protein Tbd_1634 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1634 PF07559 Flagellar basal body protein FlaE Tbd_1635 PF03963 Tbd_1635 Tbd_1635 PF13860 FlgD Ig-like domain Tbd_1635 PF13861 FlgD Tudor-like domain Tbd_1636 PF00460 Flagella basal body rod protein Tbd_1636 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tbd_1637 PF00460 Flagella basal body rod protein Tbd_1638 PF13144 SAF-like Tbd_1639 PF04316 Anti-sigma-28 factor, FlgM Tbd_1640 PF05130 FlgN protein Tbd_1641 PF01266 FAD dependent oxidoreductase Tbd_1641 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Tbd_1642 PF04972 BON domain Tbd_1643 PF01613 Flavin reductase like domain Tbd_1645 PF02754 Tbd_1645 Tbd_1646 PF13183 4Fe-4S dicluster domain Tbd_1647 PF02662 Tbd_1647 Tbd_1647 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_1647 PF13187 4Fe-4S dicluster domain Tbd_1648 PF12831 FAD dependent oxidoreductase Tbd_1650 PF00581 Rhodanese-like domain Tbd_1651 PF12850 Calcineurin-like phosphoesterase superfamily domain Tbd_1652 PF00719 Inorganic pyrophosphatase Tbd_1654 PF04542 Sigma-70 region 2 Tbd_1654 PF08281 Sigma-70, region 4 Tbd_1655 PF03640 Tbd_1655 Tbd_1656 PF00270 DEAD/DEAH box helicase Tbd_1656 PF00271 Helicase conserved C-terminal domain Tbd_1656 PF02559 CarD-like/TRCF domain Tbd_1656 PF03461 TRCF domain Tbd_1657 PF06245 Tbd_1657 Tbd_1658 PF04316 Anti-sigma-28 factor, FlgM Tbd_1659 PF00403 Heavy-metal-associated domain Tbd_1660 PF00563 EAL domain Tbd_1660 PF00672 HAMP domain Tbd_1660 PF00990 GGDEF domain Tbd_1660 PF09984 Tbd_1660 Tbd_1661 PF04392 ABC transporter substrate binding protein Tbd_1662 PF00929 Exonuclease Tbd_1663 PF00075 RNase H Tbd_1664 PF08241 Methyltransferase domain Tbd_1665 PF00753 Metallo-beta-lactamase superfamily Tbd_1665 PF16123 Tbd_1665 Tbd_1666 PF01464 Transglycosylase SLT domain Tbd_1666 PF01476 LysM domain Tbd_1668 PF00005 ABC transporter Tbd_1668 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tbd_1669 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1670 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_1671 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tbd_1672 PF13561 Enoyl-(Acyl carrier protein) reductase Tbd_1673 PF00639 PPIC-type PPIASE domain Tbd_1673 PF13624 SurA N-terminal domain Tbd_1674 PF00216 Bacterial DNA-binding protein Tbd_1675 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1675 PF02190 ATP-dependent protease La (LON) domain Tbd_1675 PF05362 Lon protease (S16) C-terminal proteolytic domain Tbd_1676 PF06689 ClpX C4-type zinc finger Tbd_1676 PF07724 AAA domain (Cdc48 subfamily) Tbd_1676 PF10431 C-terminal, D2-small domain, of ClpB protein Tbd_1677 PF00574 Clp protease Tbd_1678 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_1678 PF05697 Bacterial trigger factor protein (TF) Tbd_1678 PF05698 Bacterial trigger factor protein (TF) C-terminus Tbd_1679 PF00589 Phage integrase family Tbd_1682 PF00565 Staphylococcal nuclease homologue Tbd_1686 PF08751 TrwC relaxase Tbd_1686 PF13538 UvrD-like helicase C-terminal domain Tbd_1686 PF13604 AAA domain Tbd_1687 PF10412 Type IV secretion-system coupling protein DNA-binding domain Tbd_1692 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_1693 PF00082 Subtilase family Tbd_1696 PF00494 Squalene/phytoene synthase Tbd_1697 PF00494 Squalene/phytoene synthase Tbd_1698 PF01593 Flavin containing amine oxidoreductase Tbd_1699 PF00106 short chain dehydrogenase Tbd_1700 PF00069 Protein kinase domain Tbd_1701 PF00909 Ammonium Transporter Family Tbd_1702 PF00902 Sec-independent protein translocase protein (TatC) Tbd_1703 PF02416 mttA/Hcf106 family Tbd_1704 PF02416 mttA/Hcf106 family Tbd_1705 PF01230 HIT domain Tbd_1706 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tbd_1707 PF01502 Phosphoribosyl-AMP cyclohydrolase Tbd_1708 PF00977 Histidine biosynthesis protein Tbd_1709 PF00977 Histidine biosynthesis protein Tbd_1710 PF00117 Glutamine amidotransferase class-I Tbd_1711 PF00475 Imidazoleglycerol-phosphate dehydratase Tbd_1712 PF00155 Aminotransferase class I and II Tbd_1713 PF00815 Histidinol dehydrogenase Tbd_1714 PF01475 Ferric uptake regulator family Tbd_1715 PF09413 Domain of unknown function (DUF2007) Tbd_1717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_1717 PF03466 LysR substrate binding domain Tbd_1718 PF07690 Major Facilitator Superfamily Tbd_1719 PF04536 TLP18 Tbd_1720 PF04536 TLP18 Tbd_1721 PF04011 LemA family Tbd_1722 PF08241 Methyltransferase domain Tbd_1723 PF03167 Uracil DNA glycosylase superfamily Tbd_1724 PF00583 Acetyltransferase (GNAT) family Tbd_1725 PF00814 Glycoprotease family Tbd_1726 PF07995 Glucose / Sorbosone dehydrogenase Tbd_1727 PF08797 HIRAN domain Tbd_1728 PF02562 PhoH-like protein Tbd_1728 PF13638 PIN domain Tbd_1729 PF13852 Tbd_1729 Tbd_1731 PF00881 Nitroreductase family Tbd_1732 PF10119 Tbd_1732 Tbd_1732 PF13649 Methyltransferase domain Tbd_1733 PF00270 DEAD/DEAH box helicase Tbd_1733 PF00271 Helicase conserved C-terminal domain Tbd_1734 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tbd_1735 PF00582 Universal stress protein family Tbd_1736 PF12840 Helix-turn-helix domain Tbd_1738 PF03486 HI0933-like protein Tbd_1739 PF13247 4Fe-4S dicluster domain Tbd_1740 PF03916 Tbd_1740 Tbd_1741 PF00384 Molybdopterin oxidoreductase Tbd_1741 PF01568 Molydopterin dinucleotide binding domain Tbd_1742 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tbd_1743 PF00072 Response regulator receiver domain Tbd_1743 PF00196 Bacterial regulatory proteins, luxR family Tbd_1744 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1744 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Tbd_1746 PF00873 AcrB/AcrD/AcrF family Tbd_1747 PF16576 Tbd_1747 Tbd_1748 PF02321 Outer membrane efflux protein Tbd_1749 PF00072 Response regulator receiver domain Tbd_1749 PF00486 Transcriptional regulatory protein, C terminal Tbd_1750 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1751 PF00117 Glutamine amidotransferase class-I Tbd_1751 PF00958 GMP synthase C terminal domain Tbd_1751 PF02540 NAD synthase Tbd_1752 PF00478 IMP dehydrogenase / GMP reductase domain Tbd_1752 PF00571 CBS domain Tbd_1754 PF03658 RnfH family Ubiquitin Tbd_1755 PF03364 Polyketide cyclase / dehydrase and lipid transport Tbd_1756 PF01668 SmpB protein Tbd_1757 PF00581 Rhodanese-like domain Tbd_1758 PF02824 TGS domain Tbd_1758 PF04607 Region found in RelA / SpoT proteins Tbd_1758 PF13291 ACT domain Tbd_1758 PF13328 HD domain Tbd_1759 PF00753 Metallo-beta-lactamase superfamily Tbd_1759 PF03772 Tbd_1759 Tbd_1759 PF13567 Tbd_1759 Tbd_1760 PF00005 ABC transporter Tbd_1761 PF02687 Tbd_1761 Tbd_1761 PF12704 MacB-like periplasmic core domain Tbd_1762 PF01894 Uncharacterised protein family UPF0047 Tbd_1764 PF00919 Uncharacterized protein family UPF0004 Tbd_1764 PF04055 Radical SAM superfamily Tbd_1765 PF02535 Tbd_1765 Tbd_1766 PF12836 Helix-hairpin-helix motif Tbd_1767 PF00465 Iron-containing alcohol dehydrogenase Tbd_1770 PF00111 2Fe-2S iron-sulfur cluster binding domain Tbd_1771 PF01368 DHH family Tbd_1771 PF02272 DHHA1 domain Tbd_1772 PF01694 Rhomboid family Tbd_1773 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_1774 PF16363 Tbd_1774 Tbd_1775 PF01370 NAD dependent epimerase/dehydratase family Tbd_1776 PF16363 Tbd_1776 Tbd_1777 PF04321 RmlD substrate binding domain Tbd_1778 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Tbd_1779 PF00483 Nucleotidyl transferase Tbd_1780 PF16363 Tbd_1780 Tbd_1781 PF09314 Tbd_1781 Tbd_1781 PF13692 Glycosyl transferases group 1 Tbd_1782 PF00685 Sulfotransferase domain Tbd_1783 PF00535 Glycosyl transferase family 2 Tbd_1784 PF00534 Glycosyl transferases group 1 Tbd_1784 PF13439 Glycosyltransferase Family 4 Tbd_1785 PF01943 Tbd_1785 Tbd_1786 PF04230 Tbd_1786 Tbd_1787 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Tbd_1788 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Tbd_1791 PF11984 Tbd_1791 Tbd_1792 PF09721 Tbd_1792 Tbd_1794 PF02706 Chain length determinant protein Tbd_1794 PF13807 Tbd_1794 Tbd_1795 PF02563 Polysaccharide biosynthesis/export protein Tbd_1795 PF10531 SLBB domain Tbd_1796 PF10082 Tbd_1796 Tbd_1797 PF02517 CAAX protease self-immunity Tbd_1798 PF13145 PPIC-type PPIASE domain Tbd_1799 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tbd_1800 PF07589 Tbd_1800 Tbd_1801 PF02397 Tbd_1801 Tbd_1801 PF13727 CoA-binding domain Tbd_1803 PF07589 Tbd_1803 Tbd_1804 PF07589 Tbd_1804 Tbd_1806 PF00512 His Kinase A (phospho-acceptor) domain Tbd_1806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_1807 PF00072 Response regulator receiver domain Tbd_1807 PF00158 Sigma-54 interaction domain Tbd_1807 PF02954 Bacterial regulatory protein, Fis family Tbd_1808 PF00589 Phage integrase family Tbd_1810 PF00145 C-5 cytosine-specific DNA methylase Tbd_1811 PF16280 Tbd_1811 Tbd_1812 PF03852 DNA mismatch endonuclease Vsr Tbd_1817 PF04610 Tbd_1817 Tbd_1820 PF01443 Viral (Superfamily 1) RNA helicase Tbd_1820 PF08751 TrwC relaxase Tbd_1820 PF13604 AAA domain Tbd_1821 PF10412 Type IV secretion-system coupling protein DNA-binding domain Tbd_1825 PF13481 AAA domain Tbd_1829 PF04386 Stringent starvation protein B Tbd_1830 PF00043 Glutathione S-transferase, C-terminal domain Tbd_1830 PF02798 Glutathione S-transferase, N-terminal domain Tbd_1831 PF02167 Cytochrome C1 family Tbd_1832 PF00032 Cytochrome b(C-terminal)/b6/petD Tbd_1832 PF00033 Cytochrome b(N-terminal)/b6/petB Tbd_1833 PF00355 Rieske [2Fe-2S] domain Tbd_1833 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Tbd_1834 PF13180 PDZ domain Tbd_1834 PF13365 Trypsin-like peptidase domain Tbd_1836 PF04542 Sigma-70 region 2 Tbd_1836 PF08281 Sigma-70, region 4 Tbd_1837 PF02635 DsrE/DsrF-like family Tbd_1838 PF07396 Phosphate-selective porin O and P Tbd_1839 PF00929 Exonuclease Tbd_1841 PF01329 Pterin 4 alpha carbinolamine dehydratase Tbd_1842 PF03193 Protein of unknown function, DUF258 Tbd_1843 PF02635 DsrE/DsrF-like family Tbd_1844 PF00571 CBS domain Tbd_1845 PF01965 DJ-1/PfpI family Tbd_1846 PF04461 Protein of unknown function (DUF520) Tbd_1848 PF06865 Protein of unknown function (DUF1255) Tbd_1849 PF00764 Arginosuccinate synthase Tbd_1850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tbd_1850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tbd_1851 PF00202 Aminotransferase class-III Tbd_1852 PF06181 Tbd_1852 Tbd_1853 PF12112 Protein of unknown function (DUF3579) Tbd_1854 PF01649 Ribosomal protein S20 Tbd_1855 PF03023 Tbd_1855 Tbd_1856 PF01687 Riboflavin kinase Tbd_1856 PF06574 FAD synthetase Tbd_1857 PF00133 tRNA synthetases class I (I, L, M and V) Tbd_1857 PF06827 Zinc finger found in FPG and IleRS Tbd_1857 PF08264 Anticodon-binding domain of tRNA Tbd_1858 PF01252 Tbd_1858 Tbd_1859 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_1860 PF02401 LytB protein Tbd_1862 PF14341 Tbd_1862 Tbd_1863 PF07963 Prokaryotic N-terminal methylation motif Tbd_1864 PF07963 Prokaryotic N-terminal methylation motif Tbd_1864 PF12019 Type II transport protein GspH Tbd_1865 PF07963 Prokaryotic N-terminal methylation motif Tbd_1865 PF16732 Tbd_1865 Tbd_1866 PF01266 FAD dependent oxidoreductase Tbd_1867 PF06258 Tbd_1867 Tbd_1868 PF00534 Glycosyl transferases group 1 Tbd_1868 PF13439 Glycosyltransferase Family 4 Tbd_1869 PF00852 Glycosyltransferase family 10 (fucosyltransferase) Tbd_1870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Tbd_1871 PF02719 Polysaccharide biosynthesis protein Tbd_1871 PF13727 CoA-binding domain Tbd_1872 PF00953 Glycosyl transferase family 4 Tbd_1873 PF01370 NAD dependent epimerase/dehydratase family Tbd_1874 PF00535 Glycosyl transferase family 2 Tbd_1875 PF00535 Glycosyl transferase family 2 Tbd_1876 PF00205 Thiamine pyrophosphate enzyme, central domain Tbd_1876 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_1876 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tbd_1877 PF00005 ABC transporter Tbd_1878 PF01061 Tbd_1878 Tbd_1879 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tbd_1880 PF16363 Tbd_1880 Tbd_1881 PF00483 Nucleotidyl transferase Tbd_1882 PF00535 Glycosyl transferase family 2 Tbd_1884 PF01370 NAD dependent epimerase/dehydratase family Tbd_1885 PF01761 3-dehydroquinate synthase Tbd_1886 PF13561 Enoyl-(Acyl carrier protein) reductase Tbd_1887 PF03328 HpcH/HpaI aldolase/citrate lyase family Tbd_1888 PF04932 Tbd_1888 Tbd_1889 PF13524 Glycosyl transferases group 1 Tbd_1890 PF01634 ATP phosphoribosyltransferase Tbd_1891 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tbd_1892 PF01722 BolA-like protein Tbd_1893 PF01061 Tbd_1893 Tbd_1894 PF00005 ABC transporter Tbd_1895 PF13466 STAS domain Tbd_1896 PF05494 Toluene tolerance, Ttg2 Tbd_1897 PF02321 Outer membrane efflux protein Tbd_1898 PF02470 Tbd_1898 Tbd_1899 PF02405 Tbd_1899 Tbd_1900 PF00005 ABC transporter Tbd_1901 PF01904 Protein of unknown function DUF72 Tbd_1902 PF01406 tRNA synthetases class I (C) catalytic domain Tbd_1902 PF09190 DALR domain Tbd_1903 PF14559 Tetratricopeptide repeat Tbd_1904 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tbd_1905 PF00149 Calcineurin-like phosphoesterase Tbd_1907 PF01053 Cys/Met metabolism PLP-dependent enzyme Tbd_1908 PF00156 Phosphoribosyl transferase domain Tbd_1908 PF13522 Glutamine amidotransferase domain Tbd_1909 PF02674 Tbd_1909 Tbd_1910 PF05036 Sporulation related domain Tbd_1911 PF02875 Mur ligase family, glutamate ligase domain Tbd_1911 PF08245 Mur ligase middle domain Tbd_1912 PF01039 Carboxyl transferase domain Tbd_1913 PF00290 Tryptophan synthase alpha chain Tbd_1914 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_1915 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Tbd_1916 PF01416 tRNA pseudouridine synthase Tbd_1919 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tbd_1919 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tbd_1920 PF00180 Isocitrate/isopropylmalate dehydrogenase Tbd_1921 PF00694 Aconitase C-terminal domain Tbd_1922 PF00330 Aconitase family (aconitate hydratase) Tbd_1923 PF12832 MFS_1 like family Tbd_1924 PF04304 Tbd_1924 Tbd_1925 PF01613 Flavin reductase like domain Tbd_1926 PF04358 DsrC like protein Tbd_1927 PF00990 GGDEF domain Tbd_1928 PF10609 ParA/MinD ATPase like Tbd_1929 PF08668 HDOD domain Tbd_1930 PF01786 Alternative oxidase Tbd_1931 PF01112 Asparaginase Tbd_1933 PF13460 NADH(P)-binding Tbd_1933 PF13781 Tbd_1933 Tbd_1934 PF10027 Tbd_1934 Tbd_1938 PF00563 EAL domain Tbd_1938 PF08668 HDOD domain Tbd_1939 PF07561 Tbd_1939 Tbd_1940 PF01936 NYN domain Tbd_1941 PF02560 Cyanate lyase C-terminal domain Tbd_1942 PF00069 Protein kinase domain Tbd_1942 PF13672 Protein phosphatase 2C Tbd_1943 PF01226 Formate/nitrite transporter Tbd_1945 PF00575 S1 RNA binding domain Tbd_1945 PF09371 Tex-like protein N-terminal domain Tbd_1945 PF12836 Helix-hairpin-helix motif Tbd_1945 PF16921 Tbd_1945 Tbd_1946 PF12092 Tbd_1946 Tbd_1948 PF00175 Oxidoreductase NAD-binding domain Tbd_1949 PF06210 Tbd_1949 Tbd_1951 PF04055 Radical SAM superfamily Tbd_1953 PF00571 CBS domain Tbd_1953 PF00990 GGDEF domain Tbd_1954 PF14366 Tbd_1954 Tbd_1955 PF00485 Phosphoribulokinase / Uridine kinase family Tbd_1957 PF07238 PilZ domain Tbd_1957 PF12945 Flagellar protein YcgR Tbd_1960 PF04264 YceI-like domain Tbd_1961 PF05016 Plasmid stabilisation system protein Tbd_1965 PF02600 Disulfide bond formation protein DsbB Tbd_1966 PF01797 Transposase IS200 like Tbd_1966 PF13518 Helix-turn-helix domain Tbd_1967 PF01797 Transposase IS200 like Tbd_1967 PF13518 Helix-turn-helix domain Tbd_1968 PF12973 ChrR Cupin-like domain Tbd_1972 PF00155 Aminotransferase class I and II Tbd_1972 PF00392 Bacterial regulatory proteins, gntR family Tbd_1973 PF15919 Tbd_1973 Tbd_1974 PF07927 YcfA-like protein Tbd_1975 PF00268 Ribonucleotide reductase, small chain Tbd_1976 PF00317 Ribonucleotide reductase, all-alpha domain Tbd_1976 PF02867 Ribonucleotide reductase, barrel domain Tbd_1976 PF03477 ATP cone domain Tbd_1977 PF00551 Formyl transferase Tbd_1979 PF03358 NADPH-dependent FMN reductase Tbd_1980 PF09842 Tbd_1980 Tbd_1981 PF00581 Rhodanese-like domain Tbd_1982 PF01206 Sulfurtransferase TusA Tbd_1983 PF02635 DsrE/DsrF-like family Tbd_1984 PF00440 Bacterial regulatory proteins, tetR family Tbd_1985 PF00892 EamA-like transporter family Tbd_1986 PF00682 HMGL-like Tbd_1986 PF08502 LeuA allosteric (dimerisation) domain Tbd_1987 PF01066 CDP-alcohol phosphatidyltransferase Tbd_1988 PF02666 Tbd_1988 Tbd_1989 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tbd_1989 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Tbd_1990 PF10369 Small subunit of acetolactate synthase Tbd_1990 PF13710 ACT domain Tbd_1991 PF00205 Thiamine pyrophosphate enzyme, central domain Tbd_1991 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_1991 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tbd_1992 PF09941 Tbd_1992 Tbd_1993 PF09941 Tbd_1993 Tbd_1994 PF09941 Tbd_1994 Tbd_1995 PF06271 Tbd_1995 Tbd_1997 PF07179 Tbd_1997 Tbd_1998 PF01565 FAD binding domain Tbd_1998 PF02913 FAD linked oxidases, C-terminal domain Tbd_1999 PF00226 DnaJ domain Tbd_2000 PF07589 Tbd_2000 Tbd_2002 PF01076 Plasmid recombination enzyme Tbd_2003 PF14090 Tbd_2003 Tbd_2005 PF00589 Phage integrase family Tbd_2005 PF13356 Domain of unknown function (DUF4102) Tbd_2006 PF00578 AhpC/TSA family Tbd_2007 PF01066 CDP-alcohol phosphatidyltransferase Tbd_2008 PF00271 Helicase conserved C-terminal domain Tbd_2008 PF04408 Helicase associated domain (HA2) Tbd_2008 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Tbd_2008 PF11898 Tbd_2008 Tbd_2009 PF01891 Cobalt uptake substrate-specific transmembrane region Tbd_2010 PF03695 Uncharacterised protein family (UPF0149) Tbd_2011 PF12710 haloacid dehalogenase-like hydrolase Tbd_2012 PF02872 5'-nucleotidase, C-terminal domain Tbd_2014 PF02082 Transcriptional regulator Tbd_2015 PF02508 Tbd_2015 Tbd_2016 PF04060 Putative Fe-S cluster Tbd_2016 PF14697 4Fe-4S dicluster domain Tbd_2017 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tbd_2017 PF10531 SLBB domain Tbd_2017 PF13183 4Fe-4S dicluster domain Tbd_2017 PF13375 RnfC Barrel sandwich hybrid domain Tbd_2018 PF03116 Tbd_2018 Tbd_2019 PF04205 FMN-binding domain Tbd_2020 PF02508 Tbd_2020 Tbd_2021 PF00633 Helix-hairpin-helix motif Tbd_2021 PF00730 HhH-GPD superfamily base excision DNA repair protein Tbd_2022 PF08897 Tbd_2022 Tbd_2023 PF00072 Response regulator receiver domain Tbd_2023 PF00990 GGDEF domain Tbd_2023 PF08668 HDOD domain Tbd_2024 PF00583 Acetyltransferase (GNAT) family Tbd_2024 PF13380 CoA binding domain Tbd_2024 PF13549 ATP-grasp domain Tbd_2024 PF13607 Succinyl-CoA ligase like flavodoxin domain Tbd_2025 PF00850 Histone deacetylase domain Tbd_2026 PF00034 Cytochrome c Tbd_2027 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_2028 PF00916 Tbd_2028 Tbd_2028 PF01740 STAS domain Tbd_2029 PF00565 Staphylococcal nuclease homologue Tbd_2030 PF02463 RecF/RecN/SMC N terminal domain Tbd_2031 PF01513 ATP-NAD kinase Tbd_2032 PF01628 HrcA protein C terminal domain Tbd_2033 PF00762 Ferrochelatase Tbd_2034 PF00034 Cytochrome c Tbd_2035 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2035 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Tbd_2035 PF10518 TAT (twin-arginine translocation) pathway signal sequence Tbd_2036 PF00582 Universal stress protein family Tbd_2039 PF00186 Dihydrofolate reductase Tbd_2040 PF00303 Thymidylate synthase Tbd_2042 PF04376 Tbd_2042 Tbd_2042 PF04377 Tbd_2042 Tbd_2043 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Tbd_2044 PF00122 E1-E2 ATPase Tbd_2044 PF00403 Heavy-metal-associated domain Tbd_2044 PF00702 haloacid dehalogenase-like hydrolase Tbd_2044 PF12156 Tbd_2044 Tbd_2045 PF03597 Tbd_2045 Tbd_2046 PF01323 DSBA-like thioredoxin domain Tbd_2047 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tbd_2048 PF01032 FecCD transport family Tbd_2049 PF00005 ABC transporter Tbd_2050 PF01743 Poly A polymerase head domain Tbd_2050 PF12626 Polymerase A arginine-rich C-terminus Tbd_2050 PF12627 Probable RNA and SrmB- binding site of polymerase A Tbd_2051 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tbd_2052 PF01712 Deoxynucleoside kinase Tbd_2053 PF02548 Ketopantoate hydroxymethyltransferase Tbd_2054 PF02569 Pantoate-beta-alanine ligase Tbd_2055 PF02261 Aspartate decarboxylase Tbd_2056 PF00343 Carbohydrate phosphorylase Tbd_2057 PF00534 Glycosyl transferases group 1 Tbd_2057 PF08323 Starch synthase catalytic domain Tbd_2058 PF00128 Alpha amylase, catalytic domain Tbd_2058 PF02806 Alpha amylase, C-terminal all-beta domain Tbd_2058 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tbd_2059 PF02446 4-alpha-glucanotransferase Tbd_2060 PF03065 Glycosyl hydrolase family 57 Tbd_2061 PF00483 Nucleotidyl transferase Tbd_2062 PF02685 Glucokinase Tbd_2063 PF00342 Phosphoglucose isomerase Tbd_2064 PF01370 NAD dependent epimerase/dehydratase family Tbd_2065 PF02705 Tbd_2065 Tbd_2068 PF00772 DnaB-like helicase N terminal domain Tbd_2068 PF03796 DnaB-like helicase C terminal domain Tbd_2070 PF05930 Prophage CP4-57 regulatory protein (AlpA) Tbd_2073 PF00589 Phage integrase family Tbd_2073 PF13356 Domain of unknown function (DUF4102) Tbd_2074 PF02547 Queuosine biosynthesis protein Tbd_2075 PF01702 Queuine tRNA-ribosyltransferase Tbd_2076 PF05987 Tbd_2076 Tbd_2077 PF01435 Peptidase family M48 Tbd_2078 PF02699 Preprotein translocase subunit Tbd_2079 PF02355 Protein export membrane protein Tbd_2079 PF07549 SecD/SecF GG Motif Tbd_2079 PF13721 SecD export protein N-terminal TM region Tbd_2080 PF02355 Protein export membrane protein Tbd_2080 PF07549 SecD/SecF GG Motif Tbd_2081 PF09335 Tbd_2081 Tbd_2082 PF07452 Tbd_2082 Tbd_2082 PF07589 Tbd_2082 Tbd_2083 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Tbd_2084 PF02565 Recombination protein O C terminal Tbd_2084 PF11967 Recombination protein O N terminal Tbd_2085 PF01926 50S ribosome-binding GTPase Tbd_2085 PF07650 KH domain Tbd_2086 PF00035 Double-stranded RNA binding motif Tbd_2086 PF14622 Ribonuclease-III-like Tbd_2087 PF16137 Tbd_2087 Tbd_2088 PF00717 Peptidase S24-like Tbd_2088 PF10502 Signal peptidase, peptidase S26 Tbd_2089 PF00009 Elongation factor Tu GTP binding domain Tbd_2089 PF00679 Elongation factor G C-terminus Tbd_2089 PF03144 Elongation factor Tu domain 2 Tbd_2089 PF06421 GTP-binding protein LepA C-terminus Tbd_2090 PF05768 Glutaredoxin-like domain (DUF836) Tbd_2091 PF13180 PDZ domain Tbd_2091 PF13365 Trypsin-like peptidase domain Tbd_2092 PF04246 Tbd_2092 Tbd_2093 PF03888 MucB/RseB family Tbd_2093 PF17188 Tbd_2093 Tbd_2094 PF03872 Anti sigma-E protein RseA, N-terminal domain Tbd_2095 PF04542 Sigma-70 region 2 Tbd_2095 PF08281 Sigma-70, region 4 Tbd_2096 PF00890 FAD binding domain Tbd_2096 PF02910 Fumarate reductase flavoprotein C-term Tbd_2098 PF01571 Aminomethyltransferase folate-binding domain Tbd_2099 PF16290 Tbd_2099 Tbd_2100 PF00842 Alanine racemase, C-terminal domain Tbd_2100 PF01168 Alanine racemase, N-terminal domain Tbd_2101 PF00772 DnaB-like helicase N terminal domain Tbd_2101 PF03796 DnaB-like helicase C terminal domain Tbd_2102 PF01281 Ribosomal protein L9, N-terminal domain Tbd_2102 PF03948 Ribosomal protein L9, C-terminal domain Tbd_2103 PF01084 Ribosomal protein S18 Tbd_2105 PF01250 Ribosomal protein S6 Tbd_2106 PF01276 Orn/Lys/Arg decarboxylase, major domain Tbd_2106 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Tbd_2106 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tbd_2107 PF00692 dUTPase Tbd_2108 PF01883 Domain of unknown function DUF59 Tbd_2108 PF10609 ParA/MinD ATPase like Tbd_2110 PF00293 NUDIX domain Tbd_2111 PF01564 Spermine/spermidine synthase Tbd_2112 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tbd_2112 PF03129 Anticodon binding domain Tbd_2112 PF04073 Aminoacyl-tRNA editing domain Tbd_2113 PF01464 Transglycosylase SLT domain Tbd_2115 PF13533 Biotin-lipoyl like Tbd_2116 PF02321 Outer membrane efflux protein Tbd_2117 PF13098 Thioredoxin-like domain Tbd_2118 PF00578 AhpC/TSA family Tbd_2119 PF00206 Lyase Tbd_2119 PF10415 Fumarase C C-terminus Tbd_2120 PF01926 50S ribosome-binding GTPase Tbd_2121 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Tbd_2122 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Tbd_2122 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Tbd_2123 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tbd_2123 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tbd_2124 PF01914 Tbd_2124 Tbd_2125 PF02390 Putative methyltransferase Tbd_2126 PF05690 Thiazole biosynthesis protein ThiG Tbd_2127 PF02597 ThiS family Tbd_2129 PF07793 Tbd_2129 Tbd_2130 PF00730 HhH-GPD superfamily base excision DNA repair protein Tbd_2130 PF14815 NUDIX domain Tbd_2131 PF04358 DsrC like protein Tbd_2133 PF00445 Ribonuclease T2 family Tbd_2134 PF01063 Aminotransferase class IV Tbd_2135 PF10276 Zinc-finger domain Tbd_2136 PF13474 SnoaL-like domain Tbd_2137 PF00561 alpha/beta hydrolase fold Tbd_2138 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tbd_2138 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tbd_2138 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tbd_2138 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tbd_2139 PF00534 Glycosyl transferases group 1 Tbd_2139 PF13439 Glycosyltransferase Family 4 Tbd_2140 PF01544 CorA-like Mg2+ transporter protein Tbd_2142 PF13899 Thioredoxin-like Tbd_2143 PF00994 Probable molybdopterin binding domain Tbd_2144 PF07264 Etoposide-induced protein 2 Tbd_2146 PF05359 Tbd_2146 Tbd_2147 PF04751 Protein of unknown function (DUF615) Tbd_2148 PF01523 Putative modulator of DNA gyrase Tbd_2149 PF13472 GDSL-like Lipase/Acylhydrolase family Tbd_2150 PF04290 Tbd_2150 Tbd_2151 PF06808 Tbd_2151 Tbd_2152 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tbd_2153 PF04055 Radical SAM superfamily Tbd_2153 PF08497 Tbd_2153 Tbd_2153 PF11842 Tbd_2153 Tbd_2154 PF10052 Protein of unknown function (DUF2288) Tbd_2156 PF03625 Domain of unknown function DUF302 Tbd_2157 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_2158 PF01927 Tbd_2158 Tbd_2158 PF14451 Tbd_2158 Tbd_2159 PF08668 HDOD domain Tbd_2162 PF13649 Methyltransferase domain Tbd_2163 PF03232 Tbd_2163 Tbd_2164 PF03480 Bacterial extracellular solute-binding protein, family 7 Tbd_2165 PF00464 Serine hydroxymethyltransferase Tbd_2166 PF03477 ATP cone domain Tbd_2167 PF00194 Eukaryotic-type carbonic anhydrase Tbd_2168 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tbd_2168 PF01872 RibD C-terminal domain Tbd_2169 PF08241 Methyltransferase domain Tbd_2170 PF04055 Radical SAM superfamily Tbd_2170 PF13353 4Fe-4S single cluster domain Tbd_2171 PF03477 ATP cone domain Tbd_2171 PF13597 Anaerobic ribonucleoside-triphosphate reductase Tbd_2172 PF01814 Hemerythrin HHE cation binding domain Tbd_2173 PF10006 Tbd_2173 Tbd_2175 PF10006 Tbd_2175 Tbd_2178 PF00440 Bacterial regulatory proteins, tetR family Tbd_2178 PF08359 YsiA-like protein, C-terminal region Tbd_2179 PF11127 Protein of unknown function (DUF2892) Tbd_2180 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tbd_2182 PF03060 Nitronate monooxygenase Tbd_2183 PF02036 SCP-2 sterol transfer family Tbd_2184 PF01242 6-pyruvoyl tetrahydropterin synthase Tbd_2185 PF01136 Tbd_2185 Tbd_2186 PF01136 Tbd_2186 Tbd_2187 PF04055 Radical SAM superfamily Tbd_2187 PF16199 Tbd_2187 Tbd_2188 PF03060 Nitronate monooxygenase Tbd_2189 PF00677 Lumazine binding domain Tbd_2190 PF00925 GTP cyclohydrolase II Tbd_2190 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tbd_2191 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tbd_2192 PF01029 NusB family Tbd_2193 PF00586 AIR synthase related protein, N-terminal domain Tbd_2193 PF02769 AIR synthase related protein, C-terminal domain Tbd_2194 PF04608 Phosphatidylglycerophosphatase A Tbd_2195 PF02464 Competence-damaged protein Tbd_2196 PF13280 Tbd_2196 Tbd_2197 PF00154 recA bacterial DNA recombination protein Tbd_2198 PF02631 RecX family Tbd_2200 PF07963 Prokaryotic N-terminal methylation motif Tbd_2201 PF04143 Tbd_2201 Tbd_2202 PF06508 Queuosine biosynthesis protein QueC Tbd_2203 PF04055 Radical SAM superfamily Tbd_2203 PF13394 4Fe-4S single cluster domain Tbd_2204 PF13525 Outer membrane lipoprotein Tbd_2204 PF16331 Tbd_2204 Tbd_2205 PF00691 OmpA family Tbd_2206 PF04052 TolB amino-terminal domain Tbd_2206 PF07676 WD40-like Beta Propeller Repeat Tbd_2207 PF13103 TonB C terminal Tbd_2208 PF02472 Biopolymer transport protein ExbD/TolR Tbd_2209 PF01618 Tbd_2209 Tbd_2210 PF03061 Thioesterase superfamily Tbd_2211 PF05491 Holliday junction DNA helicase ruvB C-terminus Tbd_2211 PF05496 Holliday junction DNA helicase ruvB N-terminus Tbd_2212 PF00990 GGDEF domain Tbd_2213 PF01330 RuvA N terminal domain Tbd_2213 PF07499 RuvA, C-terminal domain Tbd_2213 PF14520 Helix-hairpin-helix domain Tbd_2214 PF02075 Crossover junction endodeoxyribonuclease RuvC Tbd_2215 PF01709 Transcriptional regulator Tbd_2216 PF00480 ROK family Tbd_2217 PF05816 Tbd_2217 Tbd_2218 PF01145 SPFH domain / Band 7 family Tbd_2218 PF15975 Tbd_2218 Tbd_2219 PF07290 Tbd_2219 Tbd_2220 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2221 PF05872 Tbd_2221 Tbd_2222 PF00218 Indole-3-glycerol phosphate synthase Tbd_2223 PF00591 Glycosyl transferase family, a/b domain Tbd_2223 PF02885 Glycosyl transferase family, helical bundle domain Tbd_2224 PF00117 Glutamine amidotransferase class-I Tbd_2225 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2227 PF00158 Sigma-54 interaction domain Tbd_2227 PF02954 Bacterial regulatory protein, Fis family Tbd_2227 PF08448 PAS fold Tbd_2228 PF00425 chorismate binding enzyme Tbd_2228 PF04715 Anthranilate synthase component I, N terminal region Tbd_2229 PF13419 Haloacid dehalogenase-like hydrolase Tbd_2230 PF00834 Ribulose-phosphate 3 epimerase family Tbd_2231 PF04379 Protein of unknown function (DUF525) Tbd_2232 PF03562 MltA specific insert domain Tbd_2232 PF06725 3D domain Tbd_2233 PF00210 Ferritin-like domain Tbd_2234 PF08085 Tbd_2234 Tbd_2235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2235 PF07730 Histidine kinase Tbd_2236 PF00072 Response regulator receiver domain Tbd_2237 PF00072 Response regulator receiver domain Tbd_2237 PF00196 Bacterial regulatory proteins, luxR family Tbd_2238 PF07043 Tbd_2238 Tbd_2239 PF07043 Tbd_2239 Tbd_2241 PF07332 Tbd_2241 Tbd_2243 PF13091 PLD-like domain Tbd_2246 PF02735 Ku70/Ku80 beta-barrel domain Tbd_2247 PF01068 ATP dependent DNA ligase domain Tbd_2247 PF04679 ATP dependent DNA ligase C terminal region Tbd_2247 PF13298 DNA polymerase Ligase (LigD) Tbd_2248 PF01814 Hemerythrin HHE cation binding domain Tbd_2250 PF05532 CsbD-like Tbd_2251 PF04972 BON domain Tbd_2252 PF07589 Tbd_2252 Tbd_2253 PF01594 Tbd_2253 Tbd_2254 PF05170 Tbd_2254 Tbd_2256 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tbd_2256 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tbd_2258 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tbd_2258 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tbd_2260 PF06884 Tbd_2260 Tbd_2262 PF05239 PRC-barrel domain Tbd_2264 PF04940 Sensors of blue-light using FAD Tbd_2266 PF00122 E1-E2 ATPase Tbd_2266 PF00403 Heavy-metal-associated domain Tbd_2266 PF00702 haloacid dehalogenase-like hydrolase Tbd_2267 PF00376 MerR family regulatory protein Tbd_2267 PF09278 MerR, DNA binding Tbd_2268 PF03544 Gram-negative bacterial TonB protein C-terminal Tbd_2269 PF01738 Dienelactone hydrolase family Tbd_2270 PF13531 Bacterial extracellular solute-binding protein Tbd_2271 PF00072 Response regulator receiver domain Tbd_2271 PF03861 ANTAR domain Tbd_2272 PF13379 NMT1-like family Tbd_2273 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_2274 PF00005 ABC transporter Tbd_2275 PF04851 Type III restriction enzyme, res subunit Tbd_2276 PF01555 DNA methylase Tbd_2277 PF05016 Plasmid stabilisation system protein Tbd_2278 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tbd_2279 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2282 PF00890 FAD binding domain Tbd_2282 PF02910 Fumarate reductase flavoprotein C-term Tbd_2283 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Tbd_2283 PF13187 4Fe-4S dicluster domain Tbd_2285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2285 PF03466 LysR substrate binding domain Tbd_2286 PF01717 Cobalamin-independent synthase, Catalytic domain Tbd_2286 PF08267 Cobalamin-independent synthase, N-terminal domain Tbd_2287 PF09997 Tbd_2287 Tbd_2288 PF12706 Beta-lactamase superfamily domain Tbd_2289 PF00625 Guanylate kinase Tbd_2290 PF01979 Amidohydrolase family Tbd_2291 PF00005 ABC transporter Tbd_2292 PF00005 ABC transporter Tbd_2293 PF06007 Tbd_2293 Tbd_2294 PF05861 Tbd_2294 Tbd_2295 PF05845 Bacterial phosphonate metabolism protein (PhnH) Tbd_2296 PF06754 Tbd_2296 Tbd_2297 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_2298 PF00528 Binding-protein-dependent transport system inner membrane component Tbd_2299 PF00005 ABC transporter Tbd_2300 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Tbd_2301 PF00392 Bacterial regulatory proteins, gntR family Tbd_2301 PF07702 UTRA domain Tbd_2302 PF03775 Septum formation inhibitor MinC, C-terminal domain Tbd_2302 PF05209 Septum formation inhibitor MinC, N-terminal domain Tbd_2303 PF13614 AAA domain Tbd_2304 PF03776 Septum formation topological specificity factor MinE Tbd_2305 PF03713 Domain of unknown function (DUF305) Tbd_2306 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Tbd_2307 PF00583 Acetyltransferase (GNAT) family Tbd_2308 PF13806 Rieske-like [2Fe-2S] domain Tbd_2309 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_2309 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_2309 PF04324 BFD-like [2Fe-2S] binding domain Tbd_2309 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2310 PF00384 Molybdopterin oxidoreductase Tbd_2310 PF01568 Molydopterin dinucleotide binding domain Tbd_2310 PF04324 BFD-like [2Fe-2S] binding domain Tbd_2310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Tbd_2311 PF00199 Catalase Tbd_2311 PF06628 Catalase-related immune-responsive Tbd_2312 PF00011 Hsp20/alpha crystallin family Tbd_2313 PF00571 CBS domain Tbd_2313 PF01595 Tbd_2313 Tbd_2313 PF03471 Transporter associated domain Tbd_2314 PF01242 6-pyruvoyl tetrahydropterin synthase Tbd_2315 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2316 PF00301 Rubredoxin Tbd_2317 PF02915 Rubrerythrin Tbd_2318 PF09335 Tbd_2318 Tbd_2319 PF00873 AcrB/AcrD/AcrF family Tbd_2320 PF13437 HlyD family secretion protein Tbd_2320 PF13533 Biotin-lipoyl like Tbd_2321 PF02321 Outer membrane efflux protein Tbd_2323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2323 PF03466 LysR substrate binding domain Tbd_2324 PF02535 Tbd_2324 Tbd_2325 PF04982 Tbd_2325 Tbd_2326 PF04358 DsrC like protein Tbd_2327 PF04358 DsrC like protein Tbd_2328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2328 PF03466 LysR substrate binding domain Tbd_2329 PF00042 Globin Tbd_2329 PF00175 Oxidoreductase NAD-binding domain Tbd_2329 PF00970 Oxidoreductase FAD-binding domain Tbd_2330 PF13649 Methyltransferase domain Tbd_2331 PF10411 Disulfide bond isomerase protein N-terminus Tbd_2331 PF13098 Thioredoxin-like domain Tbd_2332 PF01494 FAD binding domain Tbd_2333 PF01494 FAD binding domain Tbd_2334 PF00557 Metallopeptidase family M24 Tbd_2334 PF05195 Aminopeptidase P, N-terminal domain Tbd_2335 PF00483 Nucleotidyl transferase Tbd_2336 PF01636 Phosphotransferase enzyme family Tbd_2337 PF04453 Organic solvent tolerance protein Tbd_2338 PF00639 PPIC-type PPIASE domain Tbd_2338 PF09312 SurA N-terminal domain Tbd_2338 PF13616 PPIC-type PPIASE domain Tbd_2339 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Tbd_2340 PF00398 Ribosomal RNA adenine dimethylase Tbd_2341 PF00691 OmpA family Tbd_2341 PF13441 Tbd_2341 Tbd_2342 PF13875 Tbd_2342 Tbd_2343 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Tbd_2344 PF01863 Protein of unknown function DUF45 Tbd_2345 PF01553 Acyltransferase Tbd_2346 PF13242 HAD-hyrolase-like Tbd_2347 PF02092 Tbd_2347 Tbd_2347 PF05746 DALR anticodon binding domain Tbd_2348 PF02091 Glycyl-tRNA synthetase alpha subunit Tbd_2349 PF00174 Oxidoreductase molybdopterin binding domain Tbd_2350 PF01292 Prokaryotic cytochrome b561 Tbd_2351 PF00005 ABC transporter Tbd_2351 PF12848 ABC transporter Tbd_2353 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2353 PF00672 HAMP domain Tbd_2353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2354 PF00072 Response regulator receiver domain Tbd_2354 PF00486 Transcriptional regulatory protein, C terminal Tbd_2356 PF05433 Tbd_2356 Tbd_2358 PF00175 Oxidoreductase NAD-binding domain Tbd_2358 PF00970 Oxidoreductase FAD-binding domain Tbd_2359 PF01139 tRNA-splicing ligase RtcB Tbd_2360 PF01743 Poly A polymerase head domain Tbd_2360 PF01951 Archease protein family (MTH1598/TM1083) Tbd_2360 PF01966 HD domain Tbd_2360 PF12627 Probable RNA and SrmB- binding site of polymerase A Tbd_2361 PF01370 NAD dependent epimerase/dehydratase family Tbd_2362 PF01464 Transglycosylase SLT domain Tbd_2362 PF14718 Soluble lytic murein transglycosylase L domain Tbd_2363 PF00291 Pyridoxal-phosphate dependent enzyme Tbd_2363 PF00585 C-terminal regulatory domain of Threonine dehydratase Tbd_2364 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Tbd_2365 PF03884 Domain of unknown function (DUF329) Tbd_2366 PF07072 Protein of unknown function (DUF1342) Tbd_2367 PF01121 Dephospho-CoA kinase Tbd_2368 PF01478 Type IV leader peptidase family Tbd_2368 PF06750 Tbd_2368 Tbd_2369 PF00482 Type II secretion system (T2SS), protein F Tbd_2370 PF00437 Type II/IV secretion system protein Tbd_2370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tbd_2371 PF00571 CBS domain Tbd_2371 PF01595 Tbd_2371 Tbd_2371 PF03471 Transporter associated domain Tbd_2372 PF01578 Tbd_2372 Tbd_2373 PF00448 SRP54-type protein, GTPase domain Tbd_2373 PF02881 SRP54-type protein, helical bundle domain Tbd_2373 PF02978 Signal peptide binding domain Tbd_2374 PF01782 RimM N-terminal domain Tbd_2374 PF05239 PRC-barrel domain Tbd_2375 PF01746 tRNA (Guanine-1)-methyltransferase Tbd_2376 PF01245 Ribosomal protein L19 Tbd_2377 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tbd_2378 PF00589 Phage integrase family Tbd_2378 PF02899 Phage integrase, N-terminal SAM-like domain Tbd_2379 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Tbd_2380 PF01925 Tbd_2380 Tbd_2381 PF02152 Dihydroneopterin aldolase Tbd_2382 PF02660 Tbd_2382 Tbd_2384 PF00814 Glycoprotease family Tbd_2385 PF01165 Ribosomal protein S21 Tbd_2386 PF09424 Yqey-like protein Tbd_2387 PF01807 CHC2 zinc finger Tbd_2387 PF08275 DNA primase catalytic core, N-terminal domain Tbd_2387 PF08278 DNA primase DnaG DnaB-binding Tbd_2387 PF10410 DnaB-helicase binding domain of primase Tbd_2387 PF13155 Toprim-like Tbd_2388 PF00140 Sigma-70 factor, region 1 Tbd_2388 PF03979 Sigma-70 factor, region 1 Tbd_2388 PF04539 Sigma-70 region 3 Tbd_2388 PF04542 Sigma-70 region 2 Tbd_2388 PF04545 Sigma-70, region 4 Tbd_2388 PF04546 Sigma-70, non-essential region Tbd_2389 PF00440 Bacterial regulatory proteins, tetR family Tbd_2390 PF00899 ThiF family Tbd_2392 PF03572 Peptidase family S41 Tbd_2392 PF13180 PDZ domain Tbd_2393 PF01551 Peptidase family M23 Tbd_2394 PF01676 Metalloenzyme superfamily Tbd_2394 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Tbd_2395 PF01022 Bacterial regulatory protein, arsR family Tbd_2396 PF16576 Tbd_2396 Tbd_2397 PF00873 AcrB/AcrD/AcrF family Tbd_2398 PF11127 Protein of unknown function (DUF2892) Tbd_2399 PF00581 Rhodanese-like domain Tbd_2400 PF00462 Glutaredoxin Tbd_2401 PF00085 Thioredoxin Tbd_2402 PF02556 Preprotein translocase subunit SecB Tbd_2403 PF06347 Bacterial SH3 domain Tbd_2404 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tbd_2404 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tbd_2406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_2406 PF08447 PAS fold Tbd_2407 PF00588 SpoU rRNA Methylase family Tbd_2408 PF08886 Glutamate-cysteine ligase Tbd_2409 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Tbd_2409 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Tbd_2410 PF04828 Glutathione-dependent formaldehyde-activating enzyme Tbd_2411 PF02424 ApbE family Tbd_2412 PF03610 PTS system fructose IIA component Tbd_2413 PF00381 PTS HPr component phosphorylation site Tbd_2414 PF00391 PEP-utilising enzyme, mobile domain Tbd_2414 PF02896 PEP-utilising enzyme, TIM barrel domain Tbd_2414 PF05524 PEP-utilising enzyme, N-terminal Tbd_2415 PF00350 Dynamin family Tbd_2416 PF02325 Tbd_2416 Tbd_2417 PF03807 NADP oxidoreductase coenzyme F420-dependent Tbd_2417 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tbd_2418 PF01168 Alanine racemase, N-terminal domain Tbd_2419 PF00437 Type II/IV secretion system protein Tbd_2420 PF00437 Type II/IV secretion system protein Tbd_2422 PF01850 PIN domain Tbd_2423 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tbd_2424 PF01170 Putative RNA methylase family UPF0020 Tbd_2424 PF02926 THUMP domain Tbd_2425 PF03653 Tbd_2425 Tbd_2426 PF00578 AhpC/TSA family Tbd_2427 PF04102 SlyX Tbd_2428 PF00563 EAL domain Tbd_2428 PF00990 GGDEF domain Tbd_2428 PF08447 PAS fold Tbd_2429 PF04074 Domain of unknown function (DUF386) Tbd_2430 PF00005 ABC transporter Tbd_2430 PF12848 ABC transporter Tbd_2431 PF00578 AhpC/TSA family Tbd_2432 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_2433 PF01432 Peptidase family M3 Tbd_2434 PF00462 Glutaredoxin Tbd_2434 PF13511 Tbd_2434 Tbd_2435 PF03372 Endonuclease/Exonuclease/phosphatase family Tbd_2436 PF00730 HhH-GPD superfamily base excision DNA repair protein Tbd_2437 PF10150 Ribonuclease E/G family Tbd_2438 PF02545 Maf-like protein Tbd_2439 PF02590 Predicted SPOUT methyltransferase Tbd_2440 PF02410 Oligomerisation domain Tbd_2441 PF01467 Cytidylyltransferase Tbd_2442 PF00171 Aldehyde dehydrogenase family Tbd_2443 PF06144 DNA polymerase III, delta subunit Tbd_2444 PF04390 Lipopolysaccharide-assembly Tbd_2445 PF00133 tRNA synthetases class I (I, L, M and V) Tbd_2445 PF08264 Anticodon-binding domain of tRNA Tbd_2445 PF09334 tRNA synthetases class I (M) Tbd_2445 PF13603 Leucyl-tRNA synthetase, Domain 2 Tbd_2446 PF03928 Domain of unknown function (DUF336) Tbd_2447 PF00485 Phosphoribulokinase / Uridine kinase family Tbd_2448 PF02597 ThiS family Tbd_2449 PF00580 UvrD/REP helicase N-terminal domain Tbd_2449 PF13361 UvrD-like helicase C-terminal domain Tbd_2451 PF11191 Protein of unknown function (DUF2782) Tbd_2452 PF03641 Possible lysine decarboxylase Tbd_2453 PF00476 DNA polymerase family A Tbd_2453 PF01367 5'-3' exonuclease, C-terminal SAM fold Tbd_2453 PF01612 3'-5' exonuclease Tbd_2453 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tbd_2454 PF00691 OmpA family Tbd_2454 PF02412 Thrombospondin type 3 repeat Tbd_2455 PF01741 Large-conductance mechanosensitive channel, MscL Tbd_2456 PF01207 Dihydrouridine synthase (Dus) Tbd_2457 PF02954 Bacterial regulatory protein, Fis family Tbd_2458 PF01808 AICARFT/IMPCHase bienzyme Tbd_2458 PF02142 MGS-like domain Tbd_2459 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tbd_2459 PF02843 Phosphoribosylglycinamide synthetase, C domain Tbd_2459 PF02844 Phosphoribosylglycinamide synthetase, N domain Tbd_2460 PF01300 Telomere recombination Tbd_2461 PF01218 Coproporphyrinogen III oxidase Tbd_2462 PF00912 Transglycosylase Tbd_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2463 PF07730 Histidine kinase Tbd_2463 PF13185 GAF domain Tbd_2464 PF00072 Response regulator receiver domain Tbd_2464 PF00196 Bacterial regulatory proteins, luxR family Tbd_2466 PF08867 Tbd_2466 Tbd_2467 PF01180 Dihydroorotate dehydrogenase Tbd_2468 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tbd_2468 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tbd_2468 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tbd_2468 PF10371 Domain of unknown function Tbd_2468 PF13484 Tbd_2468 Tbd_2468 PF17147 Tbd_2468 Tbd_2469 PF00999 Sodium/hydrogen exchanger family Tbd_2469 PF02254 TrkA-N domain Tbd_2471 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tbd_2471 PF10414 Sirohaem synthase dimerisation region Tbd_2471 PF13241 Putative NAD(P)-binding Tbd_2471 PF14824 Sirohaem biosynthesis protein central Tbd_2472 PF01521 Iron-sulphur cluster biosynthesis Tbd_2473 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_2473 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tbd_2474 PF03916 Tbd_2474 Tbd_2475 PF13247 4Fe-4S dicluster domain Tbd_2477 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2477 PF12838 4Fe-4S dicluster domain Tbd_2477 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tbd_2478 PF02754 Tbd_2478 Tbd_2478 PF13183 4Fe-4S dicluster domain Tbd_2479 PF02665 Nitrate reductase gamma subunit Tbd_2480 PF04358 DsrC like protein Tbd_2481 PF04077 DsrH like protein Tbd_2482 PF02635 DsrE/DsrF-like family Tbd_2483 PF02635 DsrE/DsrF-like family Tbd_2484 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_2484 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_2485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tbd_2485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tbd_2487 PF09559 Tbd_2487 Tbd_2488 PF04358 DsrC like protein Tbd_2489 PF00581 Rhodanese-like domain Tbd_2491 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Tbd_2492 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Tbd_2492 PF01488 Shikimate / quinate 5-dehydrogenase Tbd_2492 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Tbd_2493 PF00472 RF-1 domain Tbd_2493 PF03462 PCRF domain Tbd_2494 PF05175 Methyltransferase small domain Tbd_2498 PF14907 Uncharacterised nucleotidyltransferase Tbd_2499 PF00462 Glutaredoxin Tbd_2500 PF00072 Response regulator receiver domain Tbd_2500 PF00158 Sigma-54 interaction domain Tbd_2500 PF02954 Bacterial regulatory protein, Fis family Tbd_2501 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2501 PF00989 PAS fold Tbd_2501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2502 PF13511 Tbd_2502 Tbd_2503 PF00120 Glutamine synthetase, catalytic domain Tbd_2503 PF03951 Glutamine synthetase, beta-Grasp domain Tbd_2504 PF01488 Shikimate / quinate 5-dehydrogenase Tbd_2504 PF08501 Shikimate dehydrogenase substrate binding domain Tbd_2505 PF00912 Transglycosylase Tbd_2506 PF00571 CBS domain Tbd_2506 PF01769 Divalent cation transporter Tbd_2506 PF03448 MgtE intracellular N domain Tbd_2507 PF00005 ABC transporter Tbd_2507 PF00664 ABC transporter transmembrane region Tbd_2508 PF01171 PP-loop family Tbd_2509 PF00266 Aminotransferase class-V Tbd_2510 PF11752 Tbd_2510 Tbd_2514 PF13036 Protein of unknown function (DUF3897) Tbd_2515 PF07233 Protein of unknown function (DUF1425) Tbd_2517 PF02219 Methylenetetrahydrofolate reductase Tbd_2518 PF04020 Tbd_2518 Tbd_2519 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Tbd_2519 PF05221 S-adenosyl-L-homocysteine hydrolase Tbd_2520 PF01699 Sodium/calcium exchanger protein Tbd_2521 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tbd_2521 PF02772 S-adenosylmethionine synthetase, central domain Tbd_2521 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tbd_2522 PF03279 Tbd_2522 Tbd_2523 PF03279 Tbd_2523 Tbd_2524 PF00583 Acetyltransferase (GNAT) family Tbd_2525 PF13380 CoA binding domain Tbd_2526 PF01678 Diaminopimelate epimerase Tbd_2527 PF04340 Protein of unknown function, DUF484 Tbd_2528 PF00589 Phage integrase family Tbd_2528 PF02899 Phage integrase, N-terminal SAM-like domain Tbd_2529 PF03976 Polyphosphate kinase 2 (PPK2) Tbd_2531 PF00873 AcrB/AcrD/AcrF family Tbd_2532 PF16576 Tbd_2532 Tbd_2533 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tbd_2534 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tbd_2534 PF07683 Cobalamin synthesis protein cobW C-terminal domain Tbd_2535 PF01809 Tbd_2535 Tbd_2538 PF01297 Periplasmic solute binding protein family Tbd_2539 PF00950 Tbd_2539 Tbd_2540 PF13466 STAS domain Tbd_2541 PF00227 Proteasome subunit Tbd_2542 PF00004 ATPase family associated with various cellular activities (AAA) Tbd_2542 PF07724 AAA domain (Cdc48 subfamily) Tbd_2543 PF03350 Tbd_2543 Tbd_2545 PF00034 Cytochrome c Tbd_2545 PF03625 Domain of unknown function DUF302 Tbd_2545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Tbd_2548 PF00072 Response regulator receiver domain Tbd_2548 PF01584 CheW-like domain Tbd_2548 PF01627 Hpt domain Tbd_2548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2549 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tbd_2549 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Tbd_2550 PF01584 CheW-like domain Tbd_2551 PF00072 Response regulator receiver domain Tbd_2552 PF00072 Response regulator receiver domain Tbd_2554 PF00301 Rubredoxin Tbd_2555 PF08543 Phosphomethylpyrimidine kinase Tbd_2556 PF02581 Thiamine monophosphate synthase/TENI Tbd_2557 PF00202 Aminotransferase class-III Tbd_2559 PF02683 Tbd_2559 Tbd_2559 PF11412 Disulphide bond corrector protein DsbC Tbd_2559 PF13899 Thioredoxin-like Tbd_2560 PF03091 CutA1 divalent ion tolerance protein Tbd_2561 PF04186 Tbd_2561 Tbd_2562 PF01370 NAD dependent epimerase/dehydratase family Tbd_2563 PF00111 2Fe-2S iron-sulfur cluster binding domain Tbd_2563 PF00175 Oxidoreductase NAD-binding domain Tbd_2563 PF00970 Oxidoreductase FAD-binding domain Tbd_2564 PF03625 Domain of unknown function DUF302 Tbd_2565 PF07219 Tbd_2565 Tbd_2566 PF04375 Tbd_2566 Tbd_2567 PF02602 Uroporphyrinogen-III synthase HemD Tbd_2568 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Tbd_2568 PF03900 Porphobilinogen deaminase, C-terminal domain Tbd_2569 PF13098 Thioredoxin-like domain Tbd_2570 PF00072 Response regulator receiver domain Tbd_2570 PF00196 Bacterial regulatory proteins, luxR family Tbd_2571 PF00072 Response regulator receiver domain Tbd_2571 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2572 PF01225 Mur ligase family, catalytic domain Tbd_2572 PF02875 Mur ligase family, glutamate ligase domain Tbd_2572 PF08245 Mur ligase middle domain Tbd_2574 PF05728 Uncharacterised protein family (UPF0227) Tbd_2575 PF00773 RNB domain Tbd_2576 PF03544 Gram-negative bacterial TonB protein C-terminal Tbd_2577 PF00316 Fructose-1-6-bisphosphatase Tbd_2578 PF00563 EAL domain Tbd_2578 PF00990 GGDEF domain Tbd_2578 PF17159 Tbd_2578 Tbd_2579 PF02622 Uncharacterized ACR, COG1678 Tbd_2580 PF03652 Uncharacterised protein family (UPF0081) Tbd_2581 PF00156 Phosphoribosyl transferase domain Tbd_2582 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tbd_2582 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tbd_2583 PF01979 Amidohydrolase family Tbd_2584 PF00795 Carbon-nitrogen hydrolase Tbd_2585 PF00990 GGDEF domain Tbd_2586 PF00692 dUTPase Tbd_2587 PF02441 Flavoprotein Tbd_2587 PF04127 DNA / pantothenate metabolism flavoprotein Tbd_2588 PF04002 RadC-like JAB domain Tbd_2589 PF00830 Ribosomal L28 family Tbd_2590 PF00471 Ribosomal protein L33 Tbd_2591 PF00593 TonB dependent receptor Tbd_2591 PF07715 TonB-dependent Receptor Plug Domain Tbd_2593 PF00027 Cyclic nucleotide-binding domain Tbd_2593 PF13545 Crp-like helix-turn-helix domain Tbd_2594 PF00487 Tbd_2594 Tbd_2594 PF01610 Tbd_2594 Tbd_2595 PF00924 Mechanosensitive ion channel Tbd_2596 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tbd_2597 PF00501 AMP-binding enzyme Tbd_2598 PF01189 NOL1/NOP2/sun family Tbd_2600 PF06146 Tbd_2600 Tbd_2601 PF01594 Tbd_2601 Tbd_2602 PF03741 Tbd_2602 Tbd_2603 PF01435 Peptidase family M48 Tbd_2604 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2604 PF03466 LysR substrate binding domain Tbd_2605 PF13470 Tbd_2605 Tbd_2606 PF00085 Thioredoxin Tbd_2608 PF00582 Universal stress protein family Tbd_2609 PF00916 Tbd_2609 Tbd_2609 PF01740 STAS domain Tbd_2610 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2610 PF00672 HAMP domain Tbd_2610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2611 PF00072 Response regulator receiver domain Tbd_2611 PF00486 Transcriptional regulatory protein, C terminal Tbd_2613 PF01925 Tbd_2613 Tbd_2614 PF00582 Universal stress protein family Tbd_2615 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_2616 PF00916 Tbd_2616 Tbd_2616 PF01740 STAS domain Tbd_2620 PF02594 Uncharacterised ACR, YggU family COG1872 Tbd_2621 PF00092 von Willebrand factor type A domain Tbd_2622 PF07728 AAA domain (dynein-related subfamily) Tbd_2622 PF08406 Tbd_2622 Tbd_2623 PF00101 Ribulose bisphosphate carboxylase, small chain Tbd_2624 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Tbd_2624 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Tbd_2625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2625 PF03466 LysR substrate binding domain Tbd_2626 PF00982 Glycosyltransferase family 20 Tbd_2627 PF05116 Sucrose-6F-phosphate phosphohydrolase Tbd_2628 PF11127 Protein of unknown function (DUF2892) Tbd_2629 PF01343 Peptidase family S49 Tbd_2629 PF08496 Tbd_2629 Tbd_2630 PF09335 Tbd_2630 Tbd_2631 PF01641 SelR domain Tbd_2632 PF01625 Peptide methionine sulfoxide reductase Tbd_2634 PF00989 PAS fold Tbd_2634 PF00990 GGDEF domain Tbd_2634 PF08448 PAS fold Tbd_2635 PF00293 NUDIX domain Tbd_2636 PF00092 von Willebrand factor type A domain Tbd_2637 PF07728 AAA domain (dynein-related subfamily) Tbd_2637 PF08406 Tbd_2637 Tbd_2638 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Tbd_2638 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Tbd_2639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2639 PF03466 LysR substrate binding domain Tbd_2640 PF00916 Tbd_2640 Tbd_2640 PF01740 STAS domain Tbd_2641 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_2642 PF01329 Pterin 4 alpha carbinolamine dehydratase Tbd_2643 PF00210 Ferritin-like domain Tbd_2644 PF00936 BMC domain Tbd_2645 PF00936 BMC domain Tbd_2646 PF00936 BMC domain Tbd_2647 PF03319 Ethanolamine utilisation protein EutN/carboxysome Tbd_2648 PF03319 Ethanolamine utilisation protein EutN/carboxysome Tbd_2649 PF08936 Carboxysome Shell Carbonic Anhydrase Tbd_2650 PF12288 Tbd_2650 Tbd_2651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tbd_2651 PF03466 LysR substrate binding domain Tbd_2652 PF00543 Nitrogen regulatory protein P-II Tbd_2653 PF10070 Tbd_2653 Tbd_2655 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tbd_2655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tbd_2656 PF02417 Tbd_2656 Tbd_2657 PF00581 Rhodanese-like domain Tbd_2658 PF04358 DsrC like protein Tbd_2659 PF07883 Cupin domain Tbd_2660 PF04342 Tbd_2660 Tbd_2661 PF00731 AIR carboxylase Tbd_2662 PF02222 ATP-grasp domain Tbd_2663 PF02643 Uncharacterized ACR, COG1430 Tbd_2664 PF11306 Protein of unknown function (DUF3108) Tbd_2665 PF11306 Protein of unknown function (DUF3108) Tbd_2666 PF00551 Formyl transferase Tbd_2667 PF00586 AIR synthase related protein, N-terminal domain Tbd_2667 PF02769 AIR synthase related protein, C-terminal domain Tbd_2668 PF01259 SAICAR synthetase Tbd_2668 PF01594 Tbd_2668 Tbd_2669 PF12048 Tbd_2669 Tbd_2670 PF00072 Response regulator receiver domain Tbd_2670 PF01966 HD domain Tbd_2671 PF00072 Response regulator receiver domain Tbd_2671 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2671 PF01627 Hpt domain Tbd_2671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2672 PF00378 Enoyl-CoA hydratase/isomerase family Tbd_2673 PF01925 Tbd_2673 Tbd_2674 PF01878 EVE domain Tbd_2675 PF00589 Phage integrase family Tbd_2675 PF13356 Domain of unknown function (DUF4102) Tbd_2677 PF05930 Prophage CP4-57 regulatory protein (AlpA) Tbd_2680 PF02384 N-6 DNA Methylase Tbd_2680 PF12161 HsdM N-terminal domain Tbd_2681 PF04326 Divergent AAA domain Tbd_2681 PF13749 ATP-dependent DNA helicase recG C-terminal Tbd_2682 PF01420 Type I restriction modification DNA specificity domain Tbd_2683 PF13304 AAA domain Tbd_2684 PF01844 HNH endonuclease Tbd_2685 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tbd_2685 PF04851 Type III restriction enzyme, res subunit Tbd_2686 PF00696 Amino acid kinase family Tbd_2687 PF04314 Protein of unknown function (DUF461) Tbd_2688 PF00593 TonB dependent receptor Tbd_2688 PF07715 TonB-dependent Receptor Plug Domain Tbd_2689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2690 PF00072 Response regulator receiver domain Tbd_2690 PF02954 Bacterial regulatory protein, Fis family Tbd_2691 PF03009 Glycerophosphoryl diester phosphodiesterase family Tbd_2692 PF02673 Tbd_2692 Tbd_2693 PF00990 GGDEF domain Tbd_2693 PF07695 Tbd_2693 Tbd_2693 PF07696 7TMR-DISM extracellular 2 Tbd_2694 PF01964 ThiC family Tbd_2694 PF13667 ThiC-associated domain Tbd_2695 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Tbd_2696 PF00581 Rhodanese-like domain Tbd_2697 PF02321 Outer membrane efflux protein Tbd_2698 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Tbd_2699 PF16363 Tbd_2699 Tbd_2700 PF04519 Tbd_2700 Tbd_2701 PF13561 Enoyl-(Acyl carrier protein) reductase Tbd_2702 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase Tbd_2703 PF00571 CBS domain Tbd_2703 PF03471 Transporter associated domain Tbd_2704 PF02130 Uncharacterized protein family UPF0054 Tbd_2705 PF02562 PhoH-like protein Tbd_2706 PF00919 Uncharacterized protein family UPF0004 Tbd_2706 PF01938 TRAM domain Tbd_2706 PF04055 Radical SAM superfamily Tbd_2707 PF03006 Tbd_2707 Tbd_2709 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tbd_2710 PF02654 Tbd_2710 Tbd_2711 PF00300 Histidine phosphatase superfamily (branch 1) Tbd_2712 PF02277 Phosphoribosyltransferase Tbd_2713 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Tbd_2714 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tbd_2714 PF13500 AAA domain Tbd_2715 PF00155 Aminotransferase class I and II Tbd_2716 PF03186 Tbd_2716 Tbd_2717 PF00881 Nitroreductase family Tbd_2718 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Tbd_2718 PF12557 Cob(I)alamin adenosyltransferase N terminal Tbd_2720 PF00593 TonB dependent receptor Tbd_2720 PF07715 TonB-dependent Receptor Plug Domain Tbd_2723 PF05164 Cell division protein ZapA Tbd_2724 PF01812 5-formyltetrahydrofolate cyclo-ligase family Tbd_2725 PF01235 Tbd_2725 Tbd_2726 PF00034 Cytochrome c Tbd_2727 PF03190 Protein of unknown function, DUF255 Tbd_2728 PF12796 Ankyrin repeats (3 copies) Tbd_2728 PF13857 Ankyrin repeats (many copies) Tbd_2729 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tbd_2730 PF00920 Dehydratase family Tbd_2730 PF01263 Aldose 1-epimerase Tbd_2731 PF01790 Tbd_2731 Tbd_2732 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Tbd_2733 PF07690 Major Facilitator Superfamily Tbd_2735 PF01925 Tbd_2735 Tbd_2736 PF00581 Rhodanese-like domain Tbd_2736 PF01022 Bacterial regulatory protein, arsR family Tbd_2737 PF07690 Major Facilitator Superfamily Tbd_2738 PF00753 Metallo-beta-lactamase superfamily Tbd_2739 PF00581 Rhodanese-like domain Tbd_2739 PF01022 Bacterial regulatory protein, arsR family Tbd_2740 PF00122 E1-E2 ATPase Tbd_2740 PF00702 haloacid dehalogenase-like hydrolase Tbd_2741 PF09851 Tbd_2741 Tbd_2742 PF03860 Domain of Unknown Function (DUF326) Tbd_2744 PF00550 Phosphopantetheine attachment site Tbd_2746 PF00501 AMP-binding enzyme Tbd_2746 PF13193 AMP-binding enzyme C-terminal domain Tbd_2747 PF07977 FabA-like domain Tbd_2748 PF03279 Tbd_2748 Tbd_2750 PF03176 MMPL family Tbd_2751 PF01522 Polysaccharide deacetylase Tbd_2752 PF13649 Methyltransferase domain Tbd_2753 PF00109 Beta-ketoacyl synthase, N-terminal domain Tbd_2753 PF02801 Beta-ketoacyl synthase, C-terminal domain Tbd_2754 PF13723 Tbd_2754 Tbd_2756 PF13561 Enoyl-(Acyl carrier protein) reductase Tbd_2757 PF00999 Sodium/hydrogen exchanger family Tbd_2758 PF01209 ubiE/COQ5 methyltransferase family Tbd_2759 PF00535 Glycosyl transferase family 2 Tbd_2760 PF01553 Acyltransferase Tbd_2761 PF06629 Tbd_2761 Tbd_2763 PF01494 FAD binding domain Tbd_2764 PF04239 Protein of unknown function (DUF421) Tbd_2766 PF03372 Endonuclease/Exonuclease/phosphatase family Tbd_2767 PF00310 Glutamine amidotransferases class-II Tbd_2767 PF01493 GXGXG motif Tbd_2767 PF01645 Conserved region in glutamate synthase Tbd_2767 PF04898 Glutamate synthase central domain Tbd_2768 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tbd_2768 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tbd_2769 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2771 PF00072 Response regulator receiver domain Tbd_2771 PF00158 Sigma-54 interaction domain Tbd_2772 PF07043 Tbd_2772 Tbd_2774 PF13202 EF hand Tbd_2776 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tbd_2778 PF05433 Tbd_2778 Tbd_2779 PF01208 Uroporphyrinogen decarboxylase (URO-D) Tbd_2780 PF04280 Tim44-like domain Tbd_2781 PF00270 DEAD/DEAH box helicase Tbd_2781 PF00271 Helicase conserved C-terminal domain Tbd_2782 PF00750 tRNA synthetases class I (R) Tbd_2782 PF03485 Arginyl tRNA synthetase N terminal domain Tbd_2782 PF05746 DALR anticodon binding domain Tbd_2783 PF05036 Sporulation related domain Tbd_2784 PF01323 DSBA-like thioredoxin domain Tbd_2785 PF00106 short chain dehydrogenase Tbd_2786 PF00072 Response regulator receiver domain Tbd_2786 PF00196 Bacterial regulatory proteins, luxR family Tbd_2787 PF13098 Thioredoxin-like domain Tbd_2788 PF08534 Redoxin Tbd_2789 PF01790 Tbd_2789 Tbd_2789 PF08534 Redoxin Tbd_2790 PF02683 Tbd_2790 Tbd_2790 PF11412 Disulphide bond corrector protein DsbC Tbd_2790 PF13899 Thioredoxin-like Tbd_2791 PF00072 Response regulator receiver domain Tbd_2791 PF00486 Transcriptional regulatory protein, C terminal Tbd_2792 PF00512 His Kinase A (phospho-acceptor) domain Tbd_2792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tbd_2792 PF08521 Tbd_2792 Tbd_2793 PF01380 SIS domain Tbd_2793 PF13522 Glutamine amidotransferase domain Tbd_2794 PF00132 Bacterial transferase hexapeptide (six repeats) Tbd_2794 PF12804 MobA-like NTP transferase domain Tbd_2795 PF00691 OmpA family Tbd_2795 PF02412 Thrombospondin type 3 repeat Tbd_2796 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Tbd_2796 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tbd_2797 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_2797 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tbd_2798 PF00231 ATP synthase Tbd_2799 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tbd_2799 PF00306 ATP synthase alpha/beta chain, C terminal domain Tbd_2799 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tbd_2800 PF00213 ATP synthase delta (OSCP) subunit Tbd_2801 PF00430 ATP synthase B/B' CF(0) Tbd_2802 PF00137 ATP synthase subunit C Tbd_2803 PF00119 ATP synthase A chain Tbd_2804 PF03899 Tbd_2804 Tbd_2805 PF02195 ParB-like nuclease domain Tbd_2806 PF13614 AAA domain Tbd_2807 PF02527 rRNA small subunit methyltransferase G Tbd_2808 PF01134 Glucose inhibited division protein A Tbd_2808 PF13932 GidA associated domain 3 Tbd_2809 PF07589 Tbd_2809 Tbd_2810 PF00005 ABC transporter Tbd_2810 PF12848 ABC transporter Tbd_2810 PF16326 Tbd_2810 Tbd_2811 PF03746 LamB/YcsF family Tbd_2812 PF02626 Allophanate hydrolase subunit 2 Tbd_2813 PF02682 Allophanate hydrolase subunit 1 Tbd_2814 PF00990 GGDEF domain Tbd_2814 PF13426 PAS domain Tbd_2815 PF00270 DEAD/DEAH box helicase Tbd_2815 PF00271 Helicase conserved C-terminal domain Tbd_2816 PF00005 ABC transporter Tbd_2816 PF00664 ABC transporter transmembrane region Tbd_2819 PF06048 Tbd_2819 Tbd_2820 PF13662 Toprim domain Tbd_2822 PF05930 Prophage CP4-57 regulatory protein (AlpA) Tbd_2823 PF00589 Phage integrase family Tbd_2823 PF13356 Domain of unknown function (DUF4102) Tbd_2824 PF01926 50S ribosome-binding GTPase Tbd_2824 PF10396 GTP-binding protein TrmE N-terminus Tbd_2824 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE Tbd_2825 PF02096 60Kd inner membrane protein Tbd_2825 PF14849 YidC periplasmic domain Tbd_2826 PF00825 Ribonuclease P Tbd_2827 PF00468 Ribosomal protein L34