locus-tag class description LT988_00010 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_00015 PF06100 MCRA family LT988_00020 PF03150 Di-haem cytochrome c peroxidase LT988_00020 PF00034 Cytochrome c LT988_00020 PF14376 Haem-binding domain LT988_00055 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LT988_00055 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LT988_00060 PF00999 Sodium/hydrogen exchanger family LT988_00065 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_00090 PF13533 Biotin-lipoyl like LT988_00095 PF00005 ABC transporter LT988_00110 PF00011 Hsp20/alpha crystallin family LT988_00120 PF00300 Histidine phosphatase superfamily (branch 1) LT988_00125 PF06100 MCRA family LT988_00130 PF03358 NADPH-dependent FMN reductase LT988_00140 PF01556 DnaJ C terminal domain LT988_00140 PF00226 DnaJ domain LT988_00190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LT988_00200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LT988_00210 PF00890 FAD binding domain LT988_00215 PF13187 4Fe-4S dicluster domain LT988_00215 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit LT988_00230 PF09335 SNARE associated Golgi protein LT988_00250 PF03190 Protein of unknown function, DUF255 LT988_00255 PF05114 Protein of unknown function (DUF692) LT988_00270 PF03306 Alpha-acetolactate decarboxylase LT988_00305 PF00141 Peroxidase LT988_00325 PF00485 Phosphoribulokinase / Uridine kinase family LT988_00350 PF13190 PDGLE domain LT988_00350 PF01891 Cobalt uptake substrate-specific transmembrane region LT988_00360 PF00005 ABC transporter LT988_00385 PF13005 zinc-finger binding domain of transposase IS66 LT988_00385 PF13007 Transposase C of IS166 homeodomain LT988_00385 PF13817 IS66 C-terminal element LT988_00385 PF03050 Transposase IS66 family LT988_00390 PF11798 IMS family HHH motif LT988_00390 PF11799 impB/mucB/samB family C-terminal domain LT988_00390 PF00817 impB/mucB/samB family LT988_00400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_00415 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LT988_00420 PF00005 ABC transporter LT988_00420 PF12848 ABC transporter LT988_00425 PF08448 PAS fold LT988_00425 PF00990 Diguanylate cyclase, GGDEF domain LT988_00425 PF00563 EAL domain LT988_00435 PF03625 Domain of unknown function DUF302 LT988_00435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LT988_00445 PF00924 Mechanosensitive ion channel LT988_00455 PF07722 Peptidase C26 LT988_00460 PF01734 Patatin-like phospholipase LT988_00465 PF00578 AhpC/TSA family LT988_00475 PF03969 AFG1-like ATPase LT988_00480 PF00155 Aminotransferase class I and II LT988_00485 PF13419 Haloacid dehalogenase-like hydrolase LT988_00490 PF01322 Cytochrome C' LT988_00520 PF01740 STAS domain LT988_00520 PF04960 Glutaminase LT988_00520 PF00027 Cyclic nucleotide-binding domain LT988_00525 PF08241 Methyltransferase domain LT988_00530 PF00156 Phosphoribosyl transferase domain LT988_00535 PF06968 Biotin and Thiamin Synthesis associated domain LT988_00535 PF04055 Radical SAM superfamily LT988_00545 PF00152 tRNA synthetases class II (D, K and N) LT988_00550 PF01132 Elongation factor P (EF-P) OB domain LT988_00550 PF08207 Elongation factor P (EF-P) KOW-like domain LT988_00550 PF09285 Elongation factor P, C-terminal LT988_00555 PF04055 Radical SAM superfamily LT988_00575 PF13614 AAA domain LT988_00590 PF00873 AcrB/AcrD/AcrF family LT988_00605 PF02445 Quinolinate synthetase A protein LT988_00610 PF03264 NapC/NirT cytochrome c family, N-terminal region LT988_00625 PF10518 TAT (twin-arginine translocation) pathway signal sequence LT988_00625 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_00625 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding LT988_00650 PF03334 Na+/H+ antiporter subunit LT988_00665 PF00361 Proton-conducting membrane transporter LT988_00670 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LT988_00670 PF00361 Proton-conducting membrane transporter LT988_00675 PF00361 Proton-conducting membrane transporter LT988_00745 PF07724 AAA domain (Cdc48 subfamily) LT988_00745 PF10431 C-terminal, D2-small domain, of ClpB protein LT988_00745 PF02861 Clp amino terminal domain, pathogenicity island component LT988_00745 PF17871 AAA lid domain LT988_00745 PF00004 ATPase family associated with various cellular activities (AAA) LT988_00750 PF03466 LysR substrate binding domain LT988_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_00770 PF00176 SNF2 family N-terminal domain LT988_00770 PF00271 Helicase conserved C-terminal domain LT988_00770 PF12419 SNF2 Helicase protein LT988_00780 PF08502 LeuA allosteric (dimerisation) domain LT988_00780 PF00682 HMGL-like LT988_00785 PF01037 Lrp/AsnC ligand binding domain LT988_00800 PF01594 AI-2E family transporter LT988_00815 PF03707 Bacterial signalling protein N terminal repeat LT988_00815 PF00990 Diguanylate cyclase, GGDEF domain LT988_00815 PF00563 EAL domain LT988_00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_00820 PF00512 His Kinase A (phospho-acceptor) domain LT988_00820 PF01627 Hpt domain LT988_00820 PF00072 Response regulator receiver domain LT988_00825 PF02464 Competence-damaged protein LT988_00825 PF18146 Damage-inducible protein CinA KH domain LT988_00825 PF00994 Probable molybdopterin binding domain LT988_00830 PF03725 3' exoribonuclease family, domain 2 LT988_00830 PF01138 3' exoribonuclease family, domain 1 LT988_00830 PF00575 S1 RNA binding domain LT988_00830 PF00013 KH domain LT988_00830 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LT988_00835 PF00312 Ribosomal protein S15 LT988_00840 PF09157 Pseudouridine synthase II TruB, C-terminal LT988_00840 PF16198 tRNA pseudouridylate synthase B C-terminal domain LT988_00840 PF01509 TruB family pseudouridylate synthase (N terminal domain) LT988_00845 PF02033 Ribosome-binding factor A LT988_00850 PF03144 Elongation factor Tu domain 2 LT988_00850 PF11987 Translation-initiation factor 2 LT988_00850 PF08364 Bacterial translation initiation factor IF-2 associated region LT988_00850 PF04760 Translation initiation factor IF-2, N-terminal region LT988_00850 PF00009 Elongation factor Tu GTP binding domain LT988_00855 PF13184 NusA-like KH domain LT988_00855 PF08529 NusA N-terminal domain LT988_00855 PF00575 S1 RNA binding domain LT988_00860 PF17384 RimP C-terminal SH3 domain LT988_00860 PF02576 RimP N-terminal domain LT988_00865 PF10263 SprT-like family LT988_00865 PF17283 SprT-like zinc ribbon domain LT988_00875 PF01048 Phosphorylase superfamily LT988_00885 PF00156 Phosphoribosyl transferase domain LT988_00890 PF00933 Glycosyl hydrolase family 3 N terminal domain LT988_00905 PF01434 Peptidase family M41 LT988_00905 PF17862 AAA+ lid domain LT988_00905 PF00004 ATPase family associated with various cellular activities (AAA) LT988_00905 PF06480 FtsH Extracellular LT988_00910 PF02545 Maf-like protein LT988_00915 PF10145 Phage-related minor tail protein LT988_00915 PF01464 Transglycosylase SLT domain LT988_00915 PF01551 Peptidase family M23 LT988_00920 PF04193 PQ loop repeat LT988_00925 PF13380 CoA binding domain LT988_00925 PF00583 Acetyltransferase (GNAT) family LT988_00925 PF13607 Succinyl-CoA ligase like flavodoxin domain LT988_00930 PF00850 Histone deacetylase domain LT988_00935 PF01738 Dienelactone hydrolase family LT988_00940 PF03441 FAD binding domain of DNA photolyase LT988_00940 PF00875 DNA photolyase LT988_00945 PF01026 TatD related DNase LT988_00955 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LT988_00970 PF00753 Metallo-beta-lactamase superfamily LT988_00985 PF00717 Peptidase S24-like LT988_00985 PF01726 LexA DNA binding domain LT988_00995 PF00152 tRNA synthetases class II (D, K and N) LT988_00995 PF01336 OB-fold nucleic acid binding domain LT988_01025 PF00224 Pyruvate kinase, barrel domain LT988_01025 PF02887 Pyruvate kinase, alpha/beta domain LT988_01060 PF00291 Pyridoxal-phosphate dependent enzyme LT988_01065 PF04231 Endonuclease I LT988_01130 PF01066 CDP-alcohol phosphatidyltransferase LT988_01135 PF00586 AIR synthase related protein, N-terminal domain LT988_01135 PF02769 AIR synthase related protein, C-terminal domain LT988_01140 PF00551 Formyl transferase LT988_01165 PF00149 Calcineurin-like phosphoesterase LT988_01175 PF01430 Hsp33 protein LT988_01180 PF07662 Na+ dependent nucleoside transporter C-terminus LT988_01180 PF07670 Nucleoside recognition LT988_01180 PF01773 Na+ dependent nucleoside transporter N-terminus LT988_01200 PF13718 GNAT acetyltransferase 2 LT988_01200 PF05127 Helicase LT988_01200 PF17176 tRNA-binding domain LT988_01200 PF08351 Domain of unknown function (DUF1726) LT988_01205 PF00293 NUDIX domain LT988_01210 PF04337 Protein of unknown function, DUF480 LT988_01220 PF01027 Inhibitor of apoptosis-promoting Bax1 LT988_01240 PF00375 Sodium:dicarboxylate symporter family LT988_01250 PF12631 MnmE helical domain LT988_01250 PF10396 GTP-binding protein TrmE N-terminus LT988_01250 PF01926 50S ribosome-binding GTPase LT988_01255 PF16360 GTP-binding GTPase Middle Region LT988_01255 PF13167 GTP-binding GTPase N-terminal LT988_01255 PF01926 50S ribosome-binding GTPase LT988_01260 PF00768 D-alanyl-D-alanine carboxypeptidase LT988_01265 PF03006 Haemolysin-III related LT988_01270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LT988_01285 PF07690 Major Facilitator Superfamily LT988_01305 PF00171 Aldehyde dehydrogenase family LT988_01305 PF01619 Proline dehydrogenase LT988_01305 PF14850 DNA-binding domain of Proline dehydrogenase LT988_01305 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LT988_01310 PF00171 Aldehyde dehydrogenase family LT988_01310 PF01619 Proline dehydrogenase LT988_01310 PF14850 DNA-binding domain of Proline dehydrogenase LT988_01310 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LT988_01325 PF11897 Protein of unknown function (DUF3417) LT988_01325 PF00343 Carbohydrate phosphorylase LT988_01330 PF12627 Probable RNA and SrmB- binding site of polymerase A LT988_01330 PF01743 Poly A polymerase head domain LT988_01330 PF01966 HD domain LT988_01355 PF01844 HNH endonuclease LT988_01360 PF00582 Universal stress protein family LT988_01365 PF04608 Phosphatidylglycerophosphatase A LT988_01370 PF00586 AIR synthase related protein, N-terminal domain LT988_01370 PF02769 AIR synthase related protein, C-terminal domain LT988_01375 PF01029 NusB family LT988_01380 PF00885 6,7-dimethyl-8-ribityllumazine synthase LT988_01385 PF00925 GTP cyclohydrolase II LT988_01385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LT988_01390 PF00677 Lumazine binding domain LT988_01395 PF01872 RibD C-terminal domain LT988_01395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LT988_01400 PF03477 ATP cone domain LT988_01405 PF00464 Serine hydroxymethyltransferase LT988_01425 PF00106 short chain dehydrogenase LT988_01430 PF00155 Aminotransferase class I and II LT988_01435 PF00561 alpha/beta hydrolase fold LT988_01440 PF08241 Methyltransferase domain LT988_01450 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LT988_01455 PF00595 PDZ domain LT988_01460 PF00005 ABC transporter LT988_01465 PF01061 ABC-2 type transporter LT988_01470 PF00578 AhpC/TSA family LT988_01480 PF03796 DnaB-like helicase C terminal domain LT988_01480 PF00772 DnaB-like helicase N terminal domain LT988_01485 PF03948 Ribosomal protein L9, C-terminal domain LT988_01485 PF01281 Ribosomal protein L9, N-terminal domain LT988_01495 PF01084 Ribosomal protein S18 LT988_01500 PF01250 Ribosomal protein S6 LT988_01510 PF01757 Acyltransferase family LT988_01525 PF13307 Helicase C-terminal domain LT988_01525 PF04851 Type III restriction enzyme, res subunit LT988_01535 PF00912 Transglycosylase LT988_01535 PF00905 Penicillin binding protein transpeptidase domain LT988_01535 PF14814 Bifunctional transglycosylase second domain LT988_01540 PF01061 ABC-2 type transporter LT988_01545 PF00005 ABC transporter LT988_01550 PF01925 Sulfite exporter TauE/SafE LT988_01560 PF04273 Putative phosphatase (DUF442) LT988_01560 PF00753 Metallo-beta-lactamase superfamily LT988_01570 PF05190 MutS family domain IV LT988_01570 PF05192 MutS domain III LT988_01570 PF01624 MutS domain I LT988_01570 PF05188 MutS domain II LT988_01570 PF00488 MutS domain V LT988_01580 PF10411 Disulfide bond isomerase protein N-terminus LT988_01580 PF13098 Thioredoxin-like domain LT988_01585 PF04461 Protein of unknown function (DUF520) LT988_01590 PF00589 Phage integrase family LT988_01590 PF02899 Phage integrase, N-terminal SAM-like domain LT988_01600 PF03692 Putative zinc- or iron-chelating domain LT988_01605 PF08443 RimK-like ATP-grasp domain LT988_01605 PF18030 RimK PreATP-grasp domain LT988_01610 PF01136 Peptidase family U32 LT988_01610 PF16325 Peptidase family U32 C-terminal domain LT988_01615 PF13180 PDZ domain LT988_01615 PF02163 Peptidase family M50 LT988_01625 PF00128 Alpha amylase, catalytic domain LT988_01625 PF03423 Carbohydrate binding domain (family 25) LT988_01625 PF01373 Glycosyl hydrolase family 14 LT988_01630 PF01594 AI-2E family transporter LT988_01635 PF13640 2OG-Fe(II) oxygenase superfamily LT988_01635 PF18331 PKHD-type hydroxylase C-terminal domain LT988_01650 PF03600 Citrate transporter LT988_01650 PF02080 TrkA-C domain LT988_01655 PF03411 Penicillin-insensitive murein endopeptidase LT988_01670 PF00892 EamA-like transporter family LT988_01690 PF00005 ABC transporter LT988_01695 PF03379 CcmB protein LT988_01700 PF01578 Cytochrome C assembly protein LT988_01710 PF03100 CcmE LT988_01715 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LT988_01715 PF01578 Cytochrome C assembly protein LT988_01720 PF08534 Redoxin LT988_01725 PF03918 Cytochrome C biogenesis protein LT988_01735 PF01161 Phosphatidylethanolamine-binding protein LT988_01740 PF00679 Elongation factor G C-terminus LT988_01740 PF14492 Elongation Factor G, domain II LT988_01740 PF03764 Elongation factor G, domain IV LT988_01740 PF00009 Elongation factor Tu GTP binding domain LT988_01740 PF03144 Elongation factor Tu domain 2 LT988_01755 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_01755 PF11867 Domain of unknown function (DUF3387) LT988_01755 PF18766 SWI2/SNF2 ATPase LT988_01770 PF02661 Fic/DOC family LT988_01825 PF01435 Peptidase family M48 LT988_01835 PF01113 Dihydrodipicolinate reductase, N-terminus LT988_01835 PF05173 Dihydrodipicolinate reductase, C-terminus LT988_01840 PF00226 DnaJ domain LT988_01840 PF01556 DnaJ C terminal domain LT988_01840 PF00684 DnaJ central domain LT988_01845 PF00012 Hsp70 protein LT988_01850 PF01025 GrpE LT988_01855 PF01628 HrcA protein C terminal domain LT988_01855 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LT988_01860 PF01513 ATP-NAD kinase LT988_01865 PF02463 RecF/RecN/SMC N terminal domain LT988_01870 PF01548 Transposase LT988_01870 PF02371 Transposase IS116/IS110/IS902 family LT988_01875 PF01370 NAD dependent epimerase/dehydratase family LT988_01880 PF10503 Esterase PHB depolymerase LT988_01885 PF04381 Putative exonuclease, RdgC LT988_01890 PF01595 Cyclin M transmembrane N-terminal domain LT988_01890 PF00571 CBS domain LT988_01890 PF03471 Transporter associated domain LT988_01895 PF18073 Rubredoxin metal binding domain LT988_01910 PF05661 Protein of unknown function (DUF808) LT988_01935 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LT988_01940 PF00582 Universal stress protein family LT988_01955 PF04172 LrgB-like family LT988_01960 PF03788 LrgA family LT988_01965 PF05343 M42 glutamyl aminopeptidase LT988_01970 PF08443 RimK-like ATP-grasp domain LT988_01970 PF08245 Mur ligase middle domain LT988_01970 PF02875 Mur ligase family, glutamate ligase domain LT988_01975 PF00733 Asparagine synthase LT988_01975 PF13537 Glutamine amidotransferase domain LT988_01980 PF01227 GTP cyclohydrolase I LT988_01985 PF00793 DAHP synthetase I family LT988_02020 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LT988_02065 PF07963 Prokaryotic N-terminal methylation motif LT988_02065 PF00114 Pilin (bacterial filament) LT988_02085 PF00535 Glycosyl transferase family 2 LT988_02090 PF13439 Glycosyltransferase Family 4 LT988_02105 PF13847 Methyltransferase domain LT988_02110 PF13439 Glycosyltransferase Family 4 LT988_02110 PF00534 Glycosyl transferases group 1 LT988_02135 PF13401 AAA domain LT988_02135 PF01471 Putative peptidoglycan binding domain LT988_02155 PF13439 Glycosyltransferase Family 4 LT988_02185 PF07804 HipA-like C-terminal domain LT988_02200 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LT988_02215 PF01850 PIN domain LT988_02250 PF01850 PIN domain LT988_02275 PF01813 ATP synthase subunit D LT988_02280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_02280 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_02285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_02285 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_02285 PF16886 ATPsynthase alpha/beta subunit N-term extension LT988_02305 PF01496 V-type ATPase 116kDa subunit family LT988_02330 PF01496 V-type ATPase 116kDa subunit family LT988_02335 PF00137 ATP synthase subunit C LT988_02345 PF01991 ATP synthase (E/31 kDa) subunit LT988_02350 PF16886 ATPsynthase alpha/beta subunit N-term extension LT988_02350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_02350 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_02355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_02380 PF01242 6-pyruvoyl tetrahydropterin synthase LT988_02385 PF06508 Queuosine biosynthesis protein QueC LT988_02395 PF00556 Antenna complex alpha/beta subunit LT988_02400 PF00556 Antenna complex alpha/beta subunit LT988_02410 PF00556 Antenna complex alpha/beta subunit LT988_02415 PF00266 Aminotransferase class-V LT988_02420 PF08323 Starch synthase catalytic domain LT988_02420 PF00534 Glycosyl transferases group 1 LT988_02425 PF00749 tRNA synthetases class I (E and Q), catalytic domain LT988_02430 PF04430 Protein of unknown function (DUF498/DUF598) LT988_02445 PF00005 ABC transporter LT988_02450 PF00528 Binding-protein-dependent transport system inner membrane component LT988_02460 PF00986 DNA gyrase B subunit, carboxyl terminus LT988_02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_02460 PF01751 Toprim domain LT988_02460 PF00204 DNA gyrase B LT988_02475 PF02609 Exonuclease VII small subunit LT988_02480 PF00348 Polyprenyl synthetase LT988_02485 PF02649 Type I GTP cyclohydrolase folE2 LT988_02510 PF01813 ATP synthase subunit D LT988_02525 PF00899 ThiF family LT988_02530 PF00166 Chaperonin 10 Kd subunit LT988_02535 PF00118 TCP-1/cpn60 chaperonin family LT988_02560 PF00690 Cation transporter/ATPase, N-terminus LT988_02560 PF00689 Cation transporting ATPase, C-terminus LT988_02565 PF12706 Beta-lactamase superfamily domain LT988_02565 PF03099 Biotin/lipoate A/B protein ligase family LT988_02570 PF06804 NlpB/DapX lipoprotein LT988_02575 PF00701 Dihydrodipicolinate synthetase family LT988_02580 PF00361 Proton-conducting membrane transporter LT988_02585 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LT988_02585 PF00361 Proton-conducting membrane transporter LT988_02590 PF00361 Proton-conducting membrane transporter LT988_02590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LT988_02595 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LT988_02600 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LT988_02605 PF12838 4Fe-4S dicluster domain LT988_02610 PF00146 NADH dehydrogenase LT988_02615 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LT988_02615 PF00384 Molybdopterin oxidoreductase LT988_02615 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LT988_02620 PF10531 SLBB domain LT988_02620 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LT988_02620 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LT988_02630 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LT988_02635 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LT988_02640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_02645 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LT988_02655 PF03840 Preprotein translocase SecG subunit LT988_02660 PF00121 Triosephosphate isomerase LT988_02665 PF01668 SmpB protein LT988_02705 PF11855 Protein of unknown function (DUF3375) LT988_02735 PF02779 Transketolase, pyrimidine binding domain LT988_02735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LT988_02735 PF02780 Transketolase, C-terminal domain LT988_02745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_02745 PF03466 LysR substrate binding domain LT988_02750 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LT988_02750 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LT988_02755 PF00101 Ribulose bisphosphate carboxylase, small chain LT988_02760 PF07728 AAA domain (dynein-related subfamily) LT988_02760 PF08406 CbbQ/NirQ/NorQ C-terminal LT988_02770 PF00092 von Willebrand factor type A domain LT988_02810 PF00271 Helicase conserved C-terminal domain LT988_02810 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_02810 PF04851 Type III restriction enzyme, res subunit LT988_02810 PF08463 EcoEI R protein C-terminal LT988_02815 PF08463 EcoEI R protein C-terminal LT988_02815 PF00271 Helicase conserved C-terminal domain LT988_02815 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_02815 PF04851 Type III restriction enzyme, res subunit LT988_02820 PF08463 EcoEI R protein C-terminal LT988_02820 PF00271 Helicase conserved C-terminal domain LT988_02820 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_02820 PF04851 Type III restriction enzyme, res subunit LT988_02825 PF08463 EcoEI R protein C-terminal LT988_02825 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_02825 PF04851 Type III restriction enzyme, res subunit LT988_02825 PF00271 Helicase conserved C-terminal domain LT988_02835 PF01594 AI-2E family transporter LT988_02840 PF17820 PDZ domain LT988_02840 PF13180 PDZ domain LT988_02850 PF03888 MucB/RseB N-terminal domain LT988_02850 PF17188 MucB/RseB C-terminal domain LT988_02860 PF08281 Sigma-70, region 4 LT988_02860 PF04542 Sigma-70 region 2 LT988_02865 PF00890 FAD binding domain LT988_02865 PF02910 Fumarate reductase flavoprotein C-term LT988_02870 PF02896 PEP-utilising enzyme, TIM barrel domain LT988_02870 PF00391 PEP-utilising enzyme, mobile domain LT988_02870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LT988_02880 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LT988_02880 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LT988_02890 PF01292 Prokaryotic cytochrome b561 LT988_02910 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LT988_02910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_02915 PF00374 Nickel-dependent hydrogenase LT988_02920 PF01292 Prokaryotic cytochrome b561 LT988_02925 PF01750 Hydrogenase maturation protease LT988_02930 PF04809 HupH hydrogenase expression protein, C-terminal conserved region LT988_02935 PF00301 Rubredoxin LT988_02940 PF00158 Sigma-54 interaction domain LT988_02940 PF02954 Bacterial regulatory protein, Fis family LT988_02940 PF00072 Response regulator receiver domain LT988_02955 PF01740 STAS domain LT988_02955 PF00916 Sulfate permease family LT988_02970 PF00268 Ribonucleotide reductase, small chain LT988_02980 PF00990 Diguanylate cyclase, GGDEF domain LT988_02980 PF03707 Bacterial signalling protein N terminal repeat LT988_02980 PF00563 EAL domain LT988_02985 PF18496 Collagenase G catalytic helper subdomain LT988_02985 PF01752 Collagenase LT988_02985 PF08453 Peptidase family M9 N-terminal LT988_02990 PF00512 His Kinase A (phospho-acceptor) domain LT988_02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_02995 PF00486 Transcriptional regulatory protein, C terminal LT988_02995 PF00072 Response regulator receiver domain LT988_03010 PF03350 Uncharacterized protein family, UPF0114 LT988_03020 PF04305 Protein of unknown function (DUF455) LT988_03025 PF05161 MOFRL family LT988_03025 PF13660 Domain of unknown function (DUF4147) LT988_03035 PF00814 Glycoprotease family LT988_03060 PF01471 Putative peptidoglycan binding domain LT988_03060 PF13401 AAA domain LT988_03075 PF00753 Metallo-beta-lactamase superfamily LT988_03075 PF03772 Competence protein LT988_03085 PF00005 ABC transporter LT988_03090 PF12704 MacB-like periplasmic core domain LT988_03090 PF02687 FtsX-like permease family LT988_03095 PF08448 PAS fold LT988_03095 PF03705 CheR methyltransferase, all-alpha domain LT988_03095 PF01739 CheR methyltransferase, SAM binding domain LT988_03095 PF01339 CheB methylesterase LT988_03100 PF00563 EAL domain LT988_03100 PF00990 Diguanylate cyclase, GGDEF domain LT988_03100 PF03707 Bacterial signalling protein N terminal repeat LT988_03110 PF13426 PAS domain LT988_03110 PF08448 PAS fold LT988_03110 PF00512 His Kinase A (phospho-acceptor) domain LT988_03110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_03110 PF00072 Response regulator receiver domain LT988_03115 PF00072 Response regulator receiver domain LT988_03115 PF00196 Bacterial regulatory proteins, luxR family LT988_03120 PF04371 Porphyromonas-type peptidyl-arginine deiminase LT988_03130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_03130 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LT988_03145 PF00374 Nickel-dependent hydrogenase LT988_03150 PF03193 RsgA GTPase LT988_03155 PF01139 tRNA-splicing ligase RtcB LT988_03180 PF03819 MazG nucleotide pyrophosphohydrolase domain LT988_03190 PF04551 GcpE protein LT988_03205 PF00472 RF-1 domain LT988_03210 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LT988_03210 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LT988_03210 PF02769 AIR synthase related protein, C-terminal domain LT988_03215 PF01225 Mur ligase family, catalytic domain LT988_03215 PF02875 Mur ligase family, glutamate ligase domain LT988_03215 PF08245 Mur ligase middle domain LT988_03220 PF00375 Sodium:dicarboxylate symporter family LT988_03250 PF01565 FAD binding domain LT988_03250 PF02913 FAD linked oxidases, C-terminal domain LT988_03255 PF04055 Radical SAM superfamily LT988_03255 PF16199 Radical_SAM C-terminal domain LT988_03260 PF01136 Peptidase family U32 LT988_03265 PF01136 Peptidase family U32 LT988_03270 PF02036 SCP-2 sterol transfer family LT988_03275 PF01464 Transglycosylase SLT domain LT988_03285 PF13401 AAA domain LT988_03285 PF01471 Putative peptidoglycan binding domain LT988_03290 PF00535 Glycosyl transferase family 2 LT988_03310 PF01266 FAD dependent oxidoreductase LT988_03325 PF08484 C-methyltransferase C-terminal domain LT988_03325 PF08421 Putative zinc binding domain LT988_03335 PF01370 NAD dependent epimerase/dehydratase family LT988_03340 PF00483 Nucleotidyl transferase LT988_03345 PF00664 ABC transporter transmembrane region LT988_03345 PF00005 ABC transporter LT988_03350 PF05547 Immune inhibitor A peptidase M6 LT988_03350 PF00801 PKD domain LT988_03360 PF18496 Collagenase G catalytic helper subdomain LT988_03360 PF01752 Collagenase LT988_03360 PF08453 Peptidase family M9 N-terminal LT988_03370 PF13439 Glycosyltransferase Family 4 LT988_03370 PF00534 Glycosyl transferases group 1 LT988_03375 PF13439 Glycosyltransferase Family 4 LT988_03375 PF00534 Glycosyl transferases group 1 LT988_03400 PF01797 Transposase IS200 like LT988_03410 PF13439 Glycosyltransferase Family 4 LT988_03410 PF00534 Glycosyl transferases group 1 LT988_03420 PF00535 Glycosyl transferase family 2 LT988_03450 PF13439 Glycosyltransferase Family 4 LT988_03450 PF00534 Glycosyl transferases group 1 LT988_03495 PF16363 GDP-mannose 4,6 dehydratase LT988_03500 PF00534 Glycosyl transferases group 1 LT988_03505 PF01209 ubiE/COQ5 methyltransferase family LT988_03525 PF01471 Putative peptidoglycan binding domain LT988_03525 PF13401 AAA domain LT988_03550 PF00005 ABC transporter LT988_03550 PF00664 ABC transporter transmembrane region LT988_03575 PF00535 Glycosyl transferase family 2 LT988_03600 PF04546 Sigma-70, non-essential region LT988_03600 PF03979 Sigma-70 factor, region 1.1 LT988_03600 PF04542 Sigma-70 region 2 LT988_03600 PF04539 Sigma-70 region 3 LT988_03600 PF04545 Sigma-70, region 4 LT988_03600 PF00140 Sigma-70 factor, region 1.2 LT988_03605 PF13662 Toprim domain LT988_03605 PF08275 DNA primase catalytic core, N-terminal domain LT988_03605 PF01807 CHC2 zinc finger LT988_03605 PF10410 DnaB-helicase binding domain of primase LT988_03605 PF08278 DNA primase DnaG DnaB-binding LT988_03610 PF09424 Yqey-like protein LT988_03615 PF01165 Ribosomal protein S21 LT988_03635 PF02386 Cation transport protein LT988_03650 PF13180 PDZ domain LT988_03655 PF01594 AI-2E family transporter LT988_03665 PF03466 LysR substrate binding domain LT988_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_03675 PF13686 DsrE/DsrF/DrsH-like family LT988_03680 PF01206 Sulfurtransferase TusA LT988_03685 PF00581 Rhodanese-like domain LT988_03690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LT988_03690 PF14824 Sirohaem biosynthesis protein central LT988_03690 PF10414 Sirohaem synthase dimerisation region LT988_03695 PF02660 Glycerol-3-phosphate acyltransferase LT988_03700 PF02152 Dihydroneopterin aldolase LT988_03720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LT988_03720 PF18029 Glyoxalase-like domain LT988_03745 PF04073 Aminoacyl-tRNA editing domain LT988_03755 PF13520 Amino acid permease LT988_03760 PF08808 RES domain LT988_03765 PF09722 Protein of unknown function (DUF2384) LT988_03770 PF00849 RNA pseudouridylate synthase LT988_03770 PF01479 S4 domain LT988_03775 PF04079 Segregation and condensation complex subunit ScpB LT988_03780 PF02616 Segregation and condensation protein ScpA LT988_03785 PF00579 tRNA synthetases class I (W and Y) LT988_03790 PF02163 Peptidase family M50 LT988_03795 PF01300 Telomere recombination LT988_03800 PF02811 PHP domain LT988_03810 PF00158 Sigma-54 interaction domain LT988_03810 PF00072 Response regulator receiver domain LT988_03810 PF02954 Bacterial regulatory protein, Fis family LT988_03835 PF04023 FeoA domain LT988_03840 PF07670 Nucleoside recognition LT988_03840 PF02421 Ferrous iron transport protein B LT988_03840 PF17910 FeoB cytosolic helical domain LT988_03840 PF07664 Ferrous iron transport protein B C terminus LT988_03850 PF01545 Cation efflux family LT988_03860 PF02470 MlaD protein LT988_03865 PF04403 Paraquat-inducible protein A LT988_03870 PF04364 DNA polymerase III chi subunit, HolC LT988_03875 PF04358 DsrC like protein LT988_03880 PF03989 DNA gyrase C-terminal domain, beta-propeller LT988_03880 PF00521 DNA gyrase/topoisomerase IV, subunit A LT988_03890 PF18389 TrmO C-terminal domain LT988_03890 PF01980 tRNA-methyltransferase O LT988_03895 PF08032 RNA 2'-O ribose methyltransferase substrate binding LT988_03895 PF00588 SpoU rRNA Methylase family LT988_03900 PF00575 S1 RNA binding domain LT988_03900 PF00773 RNB domain LT988_03900 PF08206 Ribonuclease B OB domain LT988_03900 PF08461 Ribonuclease R winged-helix domain LT988_03900 PF17876 Cold shock domain LT988_03925 PF03079 ARD/ARD' family LT988_03930 PF00596 Class II Aldolase and Adducin N-terminal domain LT988_03940 PF17820 PDZ domain LT988_03940 PF13180 PDZ domain LT988_03955 PF01925 Sulfite exporter TauE/SafE LT988_03965 PF01464 Transglycosylase SLT domain LT988_03965 PF14718 Soluble lytic murein transglycosylase L domain LT988_03980 PF02001 Protein of unknown function DUF134 LT988_03990 PF12706 Beta-lactamase superfamily domain LT988_03995 PF13545 Crp-like helix-turn-helix domain LT988_03995 PF00027 Cyclic nucleotide-binding domain LT988_04005 PF12794 Mechanosensitive ion channel inner membrane domain 1 LT988_04005 PF00924 Mechanosensitive ion channel LT988_04005 PF12795 Mechanosensitive ion channel porin domain LT988_04025 PF00375 Sodium:dicarboxylate symporter family LT988_04050 PF08411 Exonuclease C-terminal LT988_04050 PF00929 Exonuclease LT988_04055 PF01245 Ribosomal protein L19 LT988_04060 PF01746 tRNA (Guanine-1)-methyltransferase LT988_04065 PF01782 RimM N-terminal domain LT988_04065 PF05239 PRC-barrel domain LT988_04070 PF00886 Ribosomal protein S16 LT988_04075 PF05816 Toxic anion resistance protein (TelA) LT988_04090 PF00311 Phosphoenolpyruvate carboxylase LT988_04110 PF00654 Voltage gated chloride channel LT988_04120 PF01476 LysM domain LT988_04120 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LT988_04135 PF12795 Mechanosensitive ion channel porin domain LT988_04135 PF00924 Mechanosensitive ion channel LT988_04135 PF12794 Mechanosensitive ion channel inner membrane domain 1 LT988_04165 PF00884 Sulfatase LT988_04170 PF17961 Bacterial Ig domain LT988_04170 PF05737 Collagen binding domain LT988_04170 PF01476 LysM domain LT988_04175 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LT988_04175 PF12833 Helix-turn-helix domain LT988_04190 PF03616 Sodium/glutamate symporter LT988_04200 PF04403 Paraquat-inducible protein A LT988_04205 PF02470 MlaD protein LT988_04215 PF10017 Histidine-specific methyltransferase, SAM-dependent LT988_04220 PF03781 Sulfatase-modifying factor enzyme 1 LT988_04220 PF12867 DinB superfamily LT988_04260 PF01521 Iron-sulphur cluster biosynthesis LT988_04270 PF02657 Fe-S metabolism associated domain LT988_04275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_04280 PF00873 AcrB/AcrD/AcrF family LT988_04285 PF01351 Ribonuclease HII LT988_04290 PF02684 Lipid-A-disaccharide synthetase LT988_04295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LT988_04295 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_04300 PF07977 FabA-like domain LT988_04305 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LT988_04305 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_04315 PF07244 Surface antigen variable number repeat LT988_04315 PF01103 Surface antigen LT988_04320 PF02163 Peptidase family M50 LT988_04320 PF17820 PDZ domain LT988_04320 PF13180 PDZ domain LT988_04325 PF13288 DXP reductoisomerase C-terminal domain LT988_04325 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LT988_04325 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LT988_04335 PF01255 Putative undecaprenyl diphosphate synthase LT988_04340 PF01765 Ribosome recycling factor LT988_04345 PF00696 Amino acid kinase family LT988_04350 PF00889 Elongation factor TS LT988_04355 PF00318 Ribosomal protein S2 LT988_04360 PF00557 Metallopeptidase family M24 LT988_04365 PF01909 Nucleotidyltransferase domain LT988_04365 PF01966 HD domain LT988_04365 PF08335 GlnD PII-uridylyltransferase LT988_04365 PF01842 ACT domain LT988_04380 PF00155 Aminotransferase class I and II LT988_04385 PF14602 Hexapeptide repeat of succinyl-transferase LT988_04385 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LT988_04385 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_04390 PF03960 ArsC family LT988_04395 PF07687 Peptidase dimerisation domain LT988_04395 PF01546 Peptidase family M20/M25/M40 LT988_04400 PF01361 Tautomerase enzyme LT988_04410 PF01008 Initiation factor 2 subunit family LT988_04415 PF01979 Amidohydrolase family LT988_04420 PF03330 Lytic transglycolase LT988_04425 PF01520 N-acetylmuramoyl-L-alanine amidase LT988_04425 PF01471 Putative peptidoglycan binding domain LT988_04430 PF04293 SpoVR like protein LT988_04435 PF04285 Protein of unknown function (DUF444) LT988_04440 PF06798 PrkA serine protein kinase C-terminal domain LT988_04440 PF08298 PrkA AAA domain LT988_04445 PF00342 Phosphoglucose isomerase LT988_04450 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LT988_04450 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LT988_04455 PF08323 Starch synthase catalytic domain LT988_04455 PF00534 Glycosyl transferases group 1 LT988_04460 PF02261 Aspartate decarboxylase LT988_04465 PF02569 Pantoate-beta-alanine ligase LT988_04470 PF02548 Ketopantoate hydroxymethyltransferase LT988_04475 PF01743 Poly A polymerase head domain LT988_04475 PF12627 Probable RNA and SrmB- binding site of polymerase A LT988_04475 PF12626 Polymerase A arginine-rich C-terminus LT988_04485 PF02978 Signal peptide binding domain LT988_04485 PF00448 SRP54-type protein, GTPase domain LT988_04485 PF02881 SRP54-type protein, helical bundle domain LT988_04490 PF01578 Cytochrome C assembly protein LT988_04515 PF00462 Glutaredoxin LT988_04515 PF08534 Redoxin LT988_04520 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_04520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_04525 PF01207 Dihydrouridine synthase (Dus) LT988_04545 PF00919 Uncharacterized protein family UPF0004 LT988_04545 PF18693 TRAM domain LT988_04545 PF04055 Radical SAM superfamily LT988_04550 PF02899 Phage integrase, N-terminal SAM-like domain LT988_04550 PF00589 Phage integrase family LT988_04555 PF02384 N-6 DNA Methylase LT988_04570 PF00580 UvrD/REP helicase N-terminal domain LT988_04570 PF13361 UvrD-like helicase C-terminal domain LT988_04585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LT988_04600 PF01612 3'-5' exonuclease LT988_04600 PF00476 DNA polymerase family A LT988_04600 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LT988_04600 PF01367 5'-3' exonuclease, C-terminal SAM fold LT988_04610 PF00034 Cytochrome c LT988_04610 PF03150 Di-haem cytochrome c peroxidase LT988_04615 PF03937 Flavinator of succinate dehydrogenase LT988_04620 PF13085 2Fe-2S iron-sulfur cluster binding domain LT988_04625 PF00890 FAD binding domain LT988_04625 PF02910 Fumarate reductase flavoprotein C-term LT988_04630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LT988_04645 PF03279 Bacterial lipid A biosynthesis acyltransferase LT988_04655 PF01103 Surface antigen LT988_04655 PF07244 Surface antigen variable number repeat LT988_04655 PF17243 POTRA domain TamA domain 1 LT988_04670 PF02685 Glucokinase LT988_04690 PF00005 ABC transporter LT988_04695 PF02405 Permease MlaE LT988_04715 PF08753 NikR C terminal nickel binding domain LT988_04715 PF01402 Ribbon-helix-helix protein, copG family LT988_04730 PF14403 Circularly permuted ATP-grasp type 2 LT988_04735 PF02080 TrkA-C domain LT988_04735 PF02254 TrkA-N domain LT988_04740 PF02386 Cation transport protein LT988_04745 PF03477 ATP cone domain LT988_04745 PF00317 Ribonucleotide reductase, all-alpha domain LT988_04745 PF02867 Ribonucleotide reductase, barrel domain LT988_04755 PF06411 HdeA/HdeB family LT988_04765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LT988_04765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LT988_04765 PF09317 Domain of unknown function (DUF1974) LT988_04770 PF00108 Thiolase, N-terminal domain LT988_04770 PF02803 Thiolase, C-terminal domain LT988_04775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LT988_04775 PF00378 Enoyl-CoA hydratase/isomerase LT988_04775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LT988_04780 PF00501 AMP-binding enzyme LT988_04785 PF16363 GDP-mannose 4,6 dehydratase LT988_04790 PF00535 Glycosyl transferase family 2 LT988_04800 PF15887 Putative zinc-binding metallo-peptidase LT988_04800 PF10005 zinc-ribbon domain LT988_04810 PF01926 50S ribosome-binding GTPase LT988_04810 PF06071 Protein of unknown function (DUF933) LT988_04815 PF01050 Mannose-6-phosphate isomerase LT988_04815 PF00483 Nucleotidyl transferase LT988_04820 PF00459 Inositol monophosphatase family LT988_04835 PF00589 Phage integrase family LT988_04855 PF02384 N-6 DNA Methylase LT988_04915 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LT988_04930 PF00111 2Fe-2S iron-sulfur cluster binding domain LT988_04930 PF01799 [2Fe-2S] binding domain LT988_04945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_04945 PF03459 TOBE domain LT988_04955 PF00528 Binding-protein-dependent transport system inner membrane component LT988_04960 PF00005 ABC transporter LT988_04960 PF03459 TOBE domain LT988_04975 PF00990 Diguanylate cyclase, GGDEF domain LT988_04975 PF00563 EAL domain LT988_04975 PF08448 PAS fold LT988_04980 PF01625 Peptide methionine sulfoxide reductase LT988_04990 PF03009 Glycerophosphoryl diester phosphodiesterase family LT988_05020 PF01592 NifU-like N terminal domain LT988_05020 PF01106 NifU-like domain LT988_05020 PF04324 BFD-like [2Fe-2S] binding domain LT988_05025 PF00266 Aminotransferase class-V LT988_05030 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_05035 PF00266 Aminotransferase class-V LT988_05040 PF00497 Bacterial extracellular solute-binding proteins, family 3 LT988_05040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_05040 PF00512 His Kinase A (phospho-acceptor) domain LT988_05045 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LT988_05045 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_05050 PF00374 Nickel-dependent hydrogenase LT988_05055 PF13614 AAA domain LT988_05075 PF00990 Diguanylate cyclase, GGDEF domain LT988_05080 PF00654 Voltage gated chloride channel LT988_05095 PF18395 Cas3 C-terminal domain LT988_05095 PF18019 HD domain LT988_05100 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) LT988_05110 PF09344 CT1975-like protein LT988_05120 PF08798 CRISPR associated protein LT988_05130 PF01867 CRISPR associated protein Cas1 LT988_05135 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) LT988_05155 PF01842 ACT domain LT988_05160 PF00578 AhpC/TSA family LT988_05165 PF02562 PhoH-like protein LT988_05165 PF13638 PIN domain LT988_05180 PF13173 AAA domain LT988_05180 PF13635 Domain of unknown function (DUF4143) LT988_05220 PF00916 Sulfate permease family LT988_05220 PF01740 STAS domain LT988_05250 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LT988_05250 PF07703 Alpha-2-macroglobulin bait region domain LT988_05250 PF07678 A-macroglobulin TED domain LT988_05250 PF01835 MG2 domain LT988_05250 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LT988_05250 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LT988_05250 PF00207 Alpha-2-macroglobulin family LT988_05250 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LT988_05250 PF17962 Bacterial macroglobulin domain 6 LT988_05265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LT988_05265 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LT988_05280 PF01593 Flavin containing amine oxidoreductase LT988_05285 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_05285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_05310 PF00873 AcrB/AcrD/AcrF family LT988_05315 PF08681 Protein of unknown function (DUF1778) LT988_05350 PF13538 UvrD-like helicase C-terminal domain LT988_05355 PF00580 UvrD/REP helicase N-terminal domain LT988_05355 PF13361 UvrD-like helicase C-terminal domain LT988_05355 PF12705 PD-(D/E)XK nuclease superfamily LT988_05360 PF17946 RecC C-terminal domain LT988_05370 PF00005 ABC transporter LT988_05370 PF00027 Cyclic nucleotide-binding domain LT988_05380 PF01475 Ferric uptake regulator family LT988_05385 PF00950 ABC 3 transport family LT988_05390 PF00005 ABC transporter LT988_05395 PF01297 Zinc-uptake complex component A periplasmic LT988_05395 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LT988_05405 PF01169 Uncharacterized protein family UPF0016 LT988_05430 PF06779 Uncharacterised MFS-type transporter YbfB LT988_05440 PF00682 HMGL-like LT988_05440 PF00364 Biotin-requiring enzyme LT988_05440 PF02436 Conserved carboxylase domain LT988_05445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LT988_05445 PF02785 Biotin carboxylase C-terminal domain LT988_05445 PF00289 Biotin carboxylase, N-terminal domain LT988_05470 PF07670 Nucleoside recognition LT988_05485 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LT988_05490 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LT988_05495 PF01381 Helix-turn-helix LT988_05500 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LT988_05520 PF01850 PIN domain LT988_05525 PF09957 Bacterial antitoxin of type II TA system, VapB LT988_05540 PF11455 Protein of unknown function (DUF3018) LT988_05595 PF09339 IclR helix-turn-helix domain LT988_05595 PF01614 Bacterial transcriptional regulator LT988_05600 PF07726 ATPase family associated with various cellular activities (AAA) LT988_05600 PF17863 AAA lid domain LT988_05605 PF01882 Protein of unknown function DUF58 LT988_05615 PF00092 von Willebrand factor type A domain LT988_05620 PF00092 von Willebrand factor type A domain LT988_05620 PF07584 Aerotolerance regulator N-terminal LT988_05635 PF00471 Ribosomal protein L33 LT988_05640 PF00830 Ribosomal L28 family LT988_05650 PF00361 Proton-conducting membrane transporter LT988_05665 PF03334 Na+/H+ antiporter subunit LT988_05680 PF00873 AcrB/AcrD/AcrF family LT988_05685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_05695 PF08448 PAS fold LT988_05695 PF00512 His Kinase A (phospho-acceptor) domain LT988_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_05695 PF13426 PAS domain LT988_05695 PF00072 Response regulator receiver domain LT988_05700 PF00196 Bacterial regulatory proteins, luxR family LT988_05700 PF00072 Response regulator receiver domain LT988_05705 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LT988_05710 PF01850 PIN domain LT988_05720 PF13520 Amino acid permease LT988_05740 PF01594 AI-2E family transporter LT988_05760 PF03253 Urea transporter LT988_05795 PF02687 FtsX-like permease family LT988_05795 PF12704 MacB-like periplasmic core domain LT988_05795 PF00005 ABC transporter LT988_05810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_05810 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_05815 PF01813 ATP synthase subunit D LT988_05840 PF16886 ATPsynthase alpha/beta subunit N-term extension LT988_05840 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_05840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_05860 PF03631 Virulence factor BrkB LT988_05865 PF02687 FtsX-like permease family LT988_05865 PF00005 ABC transporter LT988_05865 PF12704 MacB-like periplasmic core domain LT988_05870 PF00484 Carbonic anhydrase LT988_05880 PF00872 Transposase, Mutator family LT988_05905 PF00462 Glutaredoxin LT988_05920 PF00512 His Kinase A (phospho-acceptor) domain LT988_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_05920 PF00989 PAS fold LT988_05925 PF00072 Response regulator receiver domain LT988_05925 PF00196 Bacterial regulatory proteins, luxR family LT988_05940 PF00884 Sulfatase LT988_05945 PF01476 LysM domain LT988_05945 PF00877 NlpC/P60 family LT988_05975 PF00884 Sulfatase LT988_05985 PF01476 LysM domain LT988_05985 PF01464 Transglycosylase SLT domain LT988_05990 PF01914 MarC family integral membrane protein LT988_06000 PF03600 Citrate transporter LT988_06010 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_06010 PF00034 Cytochrome c LT988_06010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LT988_06040 PF02321 Outer membrane efflux protein LT988_06045 PF00529 HlyD membrane-fusion protein of T1SS LT988_06045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_06070 PF00999 Sodium/hydrogen exchanger family LT988_06080 PF03600 Citrate transporter LT988_06085 PF00689 Cation transporting ATPase, C-terminus LT988_06085 PF00690 Cation transporter/ATPase, N-terminus LT988_06090 PF03976 Polyphosphate kinase 2 (PPK2) LT988_06105 PF12833 Helix-turn-helix domain LT988_06115 PF00924 Mechanosensitive ion channel LT988_06125 PF01544 CorA-like Mg2+ transporter protein LT988_06145 PF05724 Thiopurine S-methyltransferase (TPMT) LT988_06150 PF00989 PAS fold LT988_06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_06150 PF00512 His Kinase A (phospho-acceptor) domain LT988_06155 PF02954 Bacterial regulatory protein, Fis family LT988_06155 PF00072 Response regulator receiver domain LT988_06155 PF00158 Sigma-54 interaction domain LT988_06165 PF00004 ATPase family associated with various cellular activities (AAA) LT988_06165 PF17862 AAA+ lid domain LT988_06165 PF06480 FtsH Extracellular LT988_06165 PF01434 Peptidase family M41 LT988_06180 PF02661 Fic/DOC family LT988_06180 PF13784 Fic/DOC family N-terminal LT988_06185 PF00529 HlyD membrane-fusion protein of T1SS LT988_06185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_06190 PF07690 Major Facilitator Superfamily LT988_06200 PF00999 Sodium/hydrogen exchanger family LT988_06205 PF02705 K+ potassium transporter LT988_06215 PF05724 Thiopurine S-methyltransferase (TPMT) LT988_06225 PF16123 Hydroxyacylglutathione hydrolase C-terminus LT988_06225 PF00753 Metallo-beta-lactamase superfamily LT988_06250 PF13091 PLD-like domain LT988_06275 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_06275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_06285 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_06285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_06290 PF00582 Universal stress protein family LT988_06305 PF13533 Biotin-lipoyl like LT988_06320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_06320 PF00205 Thiamine pyrophosphate enzyme, central domain LT988_06320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LT988_06330 PF00563 EAL domain LT988_06330 PF00990 Diguanylate cyclase, GGDEF domain LT988_06330 PF03707 Bacterial signalling protein N terminal repeat LT988_06335 PF00145 C-5 cytosine-specific DNA methylase LT988_06340 PF03852 DNA mismatch endonuclease Vsr LT988_06345 PF03707 Bacterial signalling protein N terminal repeat LT988_06345 PF00563 EAL domain LT988_06345 PF00990 Diguanylate cyclase, GGDEF domain LT988_06350 PF01274 Malate synthase LT988_06365 PF00072 Response regulator receiver domain LT988_06365 PF00486 Transcriptional regulatory protein, C terminal LT988_06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_06375 PF16363 GDP-mannose 4,6 dehydratase LT988_06390 PF13396 Phospholipase_D-nuclease N-terminal LT988_06390 PF13091 PLD-like domain LT988_06400 PF03600 Citrate transporter LT988_06400 PF02080 TrkA-C domain LT988_06405 PF00004 ATPase family associated with various cellular activities (AAA) LT988_06405 PF17862 AAA+ lid domain LT988_06405 PF01434 Peptidase family M41 LT988_06415 PF00990 Diguanylate cyclase, GGDEF domain LT988_06415 PF00563 EAL domain LT988_06415 PF00563 EAL domain LT988_06415 PF00990 Diguanylate cyclase, GGDEF domain LT988_06415 PF03707 Bacterial signalling protein N terminal repeat LT988_06415 PF03707 Bacterial signalling protein N terminal repeat LT988_06420 PF00873 AcrB/AcrD/AcrF family LT988_06460 PF04408 Helicase associated domain (HA2) LT988_06460 PF11898 Domain of unknown function (DUF3418) LT988_06460 PF00270 DEAD/DEAH box helicase LT988_06460 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LT988_06460 PF00271 Helicase conserved C-terminal domain LT988_06485 PF00072 Response regulator receiver domain LT988_06485 PF00990 Diguanylate cyclase, GGDEF domain LT988_06485 PF00563 EAL domain LT988_06490 PF01343 Peptidase family S49 LT988_06495 PF13419 Haloacid dehalogenase-like hydrolase LT988_06500 PF01479 S4 domain LT988_06500 PF00849 RNA pseudouridylate synthase LT988_06505 PF12111 Polyribonucleotide phosphorylase C terminal LT988_06505 PF10150 Ribonuclease E/G family LT988_06505 PF00575 S1 RNA binding domain LT988_06525 PF01451 Low molecular weight phosphotyrosine protein phosphatase LT988_06535 PF00534 Glycosyl transferases group 1 LT988_06535 PF00862 Sucrose synthase LT988_06540 PF05166 YcgL domain LT988_06540 PF05116 Sucrose-6F-phosphate phosphohydrolase LT988_06545 PF00294 pfkB family carbohydrate kinase LT988_06550 PF00128 Alpha amylase, catalytic domain LT988_06555 PF08496 Peptidase family S49 N-terminal LT988_06555 PF01343 Peptidase family S49 LT988_06570 PF00303 Thymidylate synthase LT988_06575 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LT988_06575 PF01676 Metalloenzyme superfamily LT988_06580 PF00483 Nucleotidyl transferase LT988_06585 PF00106 short chain dehydrogenase LT988_06605 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LT988_06605 PF07685 CobB/CobQ-like glutamine amidotransferase domain LT988_06615 PF13247 4Fe-4S dicluster domain LT988_06625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LT988_06625 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_06640 PF04358 DsrC like protein LT988_06645 PF04077 DsrH like protein LT988_06650 PF02635 DsrE/DsrF-like family LT988_06655 PF02635 DsrE/DsrF-like family LT988_06660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LT988_06660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LT988_06665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LT988_06665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LT988_06690 PF04358 DsrC like protein LT988_06700 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LT988_06705 PF00484 Carbonic anhydrase LT988_06715 PF00072 Response regulator receiver domain LT988_06715 PF02954 Bacterial regulatory protein, Fis family LT988_06715 PF00158 Sigma-54 interaction domain LT988_06720 PF04002 RadC-like JAB domain LT988_06740 PF03209 PUCC protein LT988_06745 PF00556 Antenna complex alpha/beta subunit LT988_06750 PF00556 Antenna complex alpha/beta subunit LT988_06755 PF00556 Antenna complex alpha/beta subunit LT988_06760 PF00556 Antenna complex alpha/beta subunit LT988_06765 PF00556 Antenna complex alpha/beta subunit LT988_06770 PF00556 Antenna complex alpha/beta subunit LT988_06775 PF00556 Antenna complex alpha/beta subunit LT988_06780 PF00556 Antenna complex alpha/beta subunit LT988_06790 PF00210 Ferritin-like domain LT988_06795 PF00210 Ferritin-like domain LT988_06805 PF03150 Di-haem cytochrome c peroxidase LT988_06805 PF00034 Cytochrome c LT988_06815 PF03330 Lytic transglycolase LT988_06815 PF05036 Sporulation related domain LT988_06825 PF00005 ABC transporter LT988_06835 PF01323 DSBA-like thioredoxin domain LT988_06845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LT988_06845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LT988_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_06860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_06860 PF00072 Response regulator receiver domain LT988_06860 PF01627 Hpt domain LT988_06860 PF00672 HAMP domain LT988_06860 PF00512 His Kinase A (phospho-acceptor) domain LT988_06890 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LT988_06895 PF00072 Response regulator receiver domain LT988_06905 PF09363 XFP C-terminal domain LT988_06905 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase LT988_06905 PF09364 XFP N-terminal domain LT988_06910 PF00343 Carbohydrate phosphorylase LT988_06925 PF01427 D-ala-D-ala dipeptidase LT988_06935 PF00672 HAMP domain LT988_06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_06935 PF18698 Histidine kinase sensor domain LT988_06935 PF00512 His Kinase A (phospho-acceptor) domain LT988_06935 PF00989 PAS fold LT988_06940 PF00072 Response regulator receiver domain LT988_06940 PF00486 Transcriptional regulatory protein, C terminal LT988_06950 PF02654 Cobalamin-5-phosphate synthase LT988_06960 PF02277 Phosphoribosyltransferase LT988_06965 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LT988_06970 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LT988_06970 PF12557 Cob(I)alamin adenosyltransferase N terminal LT988_06980 PF00593 TonB dependent receptor LT988_06980 PF07715 TonB-dependent Receptor Plug Domain LT988_06985 PF01699 Sodium/calcium exchanger protein LT988_06990 PF01699 Sodium/calcium exchanger protein LT988_06995 PF01914 MarC family integral membrane protein LT988_07015 PF03976 Polyphosphate kinase 2 (PPK2) LT988_07030 PF00990 Diguanylate cyclase, GGDEF domain LT988_07030 PF07694 5TMR of 5TMR-LYT LT988_07035 PF03061 Thioesterase superfamily LT988_07045 PF03600 Citrate transporter LT988_07055 PF01300 Telomere recombination LT988_07070 PF00916 Sulfate permease family LT988_07070 PF01740 STAS domain LT988_07075 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LT988_07075 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LT988_07080 PF00101 Ribulose bisphosphate carboxylase, small chain LT988_07105 PF00936 BMC domain LT988_07110 PF00936 BMC domain LT988_07115 PF00210 Ferritin-like domain LT988_07130 PF03466 LysR substrate binding domain LT988_07130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_07135 PF00300 Histidine phosphatase superfamily (branch 1) LT988_07140 PF13409 Glutathione S-transferase, N-terminal domain LT988_07175 PF02469 Fasciclin domain LT988_07195 PF13817 IS66 C-terminal element LT988_07195 PF03050 Transposase IS66 family LT988_07195 PF13005 zinc-finger binding domain of transposase IS66 LT988_07195 PF13007 Transposase C of IS166 homeodomain LT988_07215 PF03050 Transposase IS66 family LT988_07215 PF13817 IS66 C-terminal element LT988_07215 PF13005 zinc-finger binding domain of transposase IS66 LT988_07215 PF13007 Transposase C of IS166 homeodomain LT988_07265 PF00145 C-5 cytosine-specific DNA methylase LT988_07300 PF00873 AcrB/AcrD/AcrF family LT988_07325 PF00924 Mechanosensitive ion channel LT988_07375 PF12826 Helix-hairpin-helix motif LT988_07375 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LT988_07375 PF03120 NAD-dependent DNA ligase OB-fold domain LT988_07375 PF01653 NAD-dependent DNA ligase adenylation domain LT988_07375 PF00533 BRCA1 C Terminus (BRCT) domain LT988_07385 PF13005 zinc-finger binding domain of transposase IS66 LT988_07385 PF13007 Transposase C of IS166 homeodomain LT988_07385 PF03050 Transposase IS66 family LT988_07385 PF13817 IS66 C-terminal element LT988_07410 PF05685 Putative restriction endonuclease LT988_07420 PF00271 Helicase conserved C-terminal domain LT988_07420 PF00270 DEAD/DEAH box helicase LT988_07420 PF09369 Domain of unknown function (DUF1998) LT988_07425 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LT988_07430 PF02222 ATP-grasp domain LT988_07430 PF01370 NAD dependent epimerase/dehydratase family LT988_07455 PF02586 SOS response associated peptidase (SRAP) LT988_07465 PF00171 Aldehyde dehydrogenase family LT988_07470 PF01804 Penicillin amidase LT988_07485 PF06685 Protein of unknown function (DUF1186) LT988_07490 PF09456 RcsC Alpha-Beta-Loop (ABL) LT988_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_07490 PF00512 His Kinase A (phospho-acceptor) domain LT988_07490 PF00072 Response regulator receiver domain LT988_07495 PF00881 Nitroreductase family LT988_07505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LT988_07515 PF01596 O-methyltransferase LT988_07565 PF07963 Prokaryotic N-terminal methylation motif LT988_07565 PF00114 Pilin (bacterial filament) LT988_07580 PF05567 Neisseria PilC beta-propeller domain LT988_07600 PF00114 Pilin (bacterial filament) LT988_07600 PF07963 Prokaryotic N-terminal methylation motif LT988_07605 PF00114 Pilin (bacterial filament) LT988_07605 PF07963 Prokaryotic N-terminal methylation motif LT988_07635 PF00107 Zinc-binding dehydrogenase LT988_07635 PF08240 Alcohol dehydrogenase GroES-like domain LT988_07645 PF00589 Phage integrase family LT988_07645 PF02899 Phage integrase, N-terminal SAM-like domain LT988_07690 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LT988_07695 PF13237 4Fe-4S dicluster domain LT988_07695 PF12801 4Fe-4S binding domain LT988_07700 PF12800 4Fe-4S binding domain LT988_07700 PF12838 4Fe-4S dicluster domain LT988_07705 PF01568 Molydopterin dinucleotide binding domain LT988_07705 PF10518 TAT (twin-arginine translocation) pathway signal sequence LT988_07705 PF00384 Molybdopterin oxidoreductase LT988_07705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LT988_07730 PF00005 ABC transporter LT988_07740 PF00355 Rieske [2Fe-2S] domain LT988_07755 PF01641 SelR domain LT988_07760 PF00892 EamA-like transporter family LT988_07775 PF10996 Beta-Casp domain LT988_07775 PF00753 Metallo-beta-lactamase superfamily LT988_07775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LT988_07790 PF05552 Conserved TM helix LT988_07790 PF00924 Mechanosensitive ion channel LT988_07845 PF00282 Pyridoxal-dependent decarboxylase conserved domain LT988_07855 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LT988_07920 PF00589 Phage integrase family LT988_07920 PF02899 Phage integrase, N-terminal SAM-like domain LT988_07925 PF00589 Phage integrase family LT988_07930 PF02899 Phage integrase, N-terminal SAM-like domain LT988_07930 PF00589 Phage integrase family LT988_07935 PF13007 Transposase C of IS166 homeodomain LT988_07935 PF13005 zinc-finger binding domain of transposase IS66 LT988_07935 PF13817 IS66 C-terminal element LT988_07935 PF03050 Transposase IS66 family LT988_07965 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) LT988_07970 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LT988_07975 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_07980 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_07980 PF11844 Domain of unknown function (DUF3364) LT988_07985 PF06988 NifT/FixU protein LT988_07990 PF00037 4Fe-4S binding domain LT988_07995 PF02579 Dinitrogenase iron-molybdenum cofactor LT988_07995 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal LT988_08010 PF03030 Inorganic H+ pyrophosphatase LT988_08025 PF02219 Methylenetetrahydrofolate reductase LT988_08030 PF05221 S-adenosyl-L-homocysteine hydrolase LT988_08030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LT988_08035 PF02773 S-adenosylmethionine synthetase, C-terminal domain LT988_08035 PF00438 S-adenosylmethionine synthetase, N-terminal domain LT988_08035 PF02772 S-adenosylmethionine synthetase, central domain LT988_08045 PF00456 Transketolase, thiamine diphosphate binding domain LT988_08045 PF02780 Transketolase, C-terminal domain LT988_08045 PF02779 Transketolase, pyrimidine binding domain LT988_08050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LT988_08050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LT988_08060 PF00162 Phosphoglycerate kinase LT988_08065 PF02887 Pyruvate kinase, alpha/beta domain LT988_08065 PF00224 Pyruvate kinase, barrel domain LT988_08070 PF01116 Fructose-bisphosphate aldolase class-II LT988_08085 PF01243 Pyridoxamine 5'-phosphate oxidase LT988_08085 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LT988_08090 PF00463 Isocitrate lyase family LT988_08095 PF03707 Bacterial signalling protein N terminal repeat LT988_08095 PF00990 Diguanylate cyclase, GGDEF domain LT988_08095 PF00563 EAL domain LT988_08120 PF03737 Aldolase/RraA LT988_08125 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LT988_08145 PF09972 Predicted membrane protein (DUF2207) LT988_08150 PF04011 LemA family LT988_08155 PF01464 Transglycosylase SLT domain LT988_08165 PF02666 Phosphatidylserine decarboxylase LT988_08190 PF08443 RimK-like ATP-grasp domain LT988_08190 PF18030 RimK PreATP-grasp domain LT988_08200 PF14403 Circularly permuted ATP-grasp type 2 LT988_08215 PF00072 Response regulator receiver domain LT988_08215 PF00512 His Kinase A (phospho-acceptor) domain LT988_08215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_08215 PF00672 HAMP domain LT988_08215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_08215 PF01627 Hpt domain LT988_08220 PF03631 Virulence factor BrkB LT988_08225 PF00578 AhpC/TSA family LT988_08230 PF00271 Helicase conserved C-terminal domain LT988_08230 PF00270 DEAD/DEAH box helicase LT988_08230 PF03880 DbpA RNA binding domain LT988_08245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LT988_08245 PF07733 Bacterial DNA polymerase III alpha NTPase domain LT988_08245 PF14579 Helix-hairpin-helix motif LT988_08245 PF02811 PHP domain LT988_08245 PF01336 OB-fold nucleic acid binding domain LT988_08255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_08255 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_08290 PF03976 Polyphosphate kinase 2 (PPK2) LT988_08325 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LT988_08325 PF12833 Helix-turn-helix domain LT988_08345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_08345 PF00529 HlyD membrane-fusion protein of T1SS LT988_08355 PF13533 Biotin-lipoyl like LT988_08360 PF00873 AcrB/AcrD/AcrF family LT988_08375 PF07556 Protein of unknown function (DUF1538) LT988_08390 PF01740 STAS domain LT988_08390 PF00916 Sulfate permease family LT988_08410 PF04262 Glutamate-cysteine ligase LT988_08415 PF17804 Tail specific protease N-terminal domain LT988_08415 PF03572 Peptidase family S41 LT988_08415 PF11818 C-terminal domain of tail specific protease (DUF3340) LT988_08415 PF00595 PDZ domain LT988_08420 PF01327 Polypeptide deformylase LT988_08430 PF02578 Multi-copper polyphenol oxidoreductase laccase LT988_08435 PF00849 RNA pseudouridylate synthase LT988_08435 PF01479 S4 domain LT988_08440 PF13525 Outer membrane lipoprotein LT988_08445 PF00543 Nitrogen regulatory protein P-II LT988_08450 PF00795 Carbon-nitrogen hydrolase LT988_08450 PF02540 NAD synthase LT988_08455 PF02629 CoA binding domain LT988_08455 PF00549 CoA-ligase LT988_08460 PF00549 CoA-ligase LT988_08460 PF08442 ATP-grasp domain LT988_08465 PF00512 His Kinase A (phospho-acceptor) domain LT988_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_08470 PF00158 Sigma-54 interaction domain LT988_08470 PF00072 Response regulator receiver domain LT988_08470 PF02954 Bacterial regulatory protein, Fis family LT988_08475 PF00696 Amino acid kinase family LT988_08475 PF00583 Acetyltransferase (GNAT) family LT988_08480 PF00924 Mechanosensitive ion channel LT988_08480 PF12795 Mechanosensitive ion channel porin domain LT988_08480 PF12794 Mechanosensitive ion channel inner membrane domain 1 LT988_08495 PF01258 Prokaryotic dksA/traR C4-type zinc finger LT988_08505 PF07152 YaeQ protein LT988_08510 PF00483 Nucleotidyl transferase LT988_08515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LT988_08520 PF18073 Rubredoxin metal binding domain LT988_08545 PF02690 Na+/Pi-cotransporter LT988_08550 PF00501 AMP-binding enzyme LT988_08590 PF00664 ABC transporter transmembrane region LT988_08590 PF00005 ABC transporter LT988_08595 PF00571 CBS domain LT988_08600 PF00271 Helicase conserved C-terminal domain LT988_08600 PF12419 SNF2 Helicase protein LT988_08600 PF00176 SNF2 family N-terminal domain LT988_08605 PF04434 SWIM zinc finger LT988_08635 PF01336 OB-fold nucleic acid binding domain LT988_08635 PF00152 tRNA synthetases class II (D, K and N) LT988_08635 PF02938 GAD domain LT988_08655 PF00106 short chain dehydrogenase LT988_08660 PF03449 Transcription elongation factor, N-terminal LT988_08660 PF01272 Transcription elongation factor, GreA/GreB, C-term LT988_08665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LT988_08665 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LT988_08665 PF02142 MGS-like domain LT988_08670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LT988_08670 PF00117 Glutamine amidotransferase class-I LT988_08675 PF00085 Thioredoxin LT988_08680 PF00085 Thioredoxin LT988_08685 PF01171 PP-loop family LT988_08685 PF09179 TilS substrate binding domain LT988_08685 PF11734 TilS substrate C-terminal domain LT988_08690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LT988_08700 PF00117 Glutamine amidotransferase class-I LT988_08705 PF00005 ABC transporter LT988_08705 PF12704 MacB-like periplasmic core domain LT988_08705 PF02687 FtsX-like permease family LT988_08720 PF03707 Bacterial signalling protein N terminal repeat LT988_08720 PF00990 Diguanylate cyclase, GGDEF domain LT988_08720 PF00563 EAL domain LT988_08730 PF13742 OB-fold nucleic acid binding domain LT988_08730 PF02601 Exonuclease VII, large subunit LT988_08735 PF00571 CBS domain LT988_08735 PF00478 IMP dehydrogenase / GMP reductase domain LT988_08740 PF00958 GMP synthase C terminal domain LT988_08740 PF02540 NAD synthase LT988_08740 PF00117 Glutamine amidotransferase class-I LT988_08745 PF14437 MafB19-like deaminase LT988_08795 PF04055 Radical SAM superfamily LT988_08795 PF00919 Uncharacterized protein family UPF0004 LT988_08805 PF01177 Asp/Glu/Hydantoin racemase LT988_08810 PF03372 Endonuclease/Exonuclease/phosphatase family LT988_08815 PF00483 Nucleotidyl transferase LT988_08830 PF04055 Radical SAM superfamily LT988_08835 PF00293 NUDIX domain LT988_08840 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LT988_08850 PF00556 Antenna complex alpha/beta subunit LT988_08855 PF00556 Antenna complex alpha/beta subunit LT988_08860 PF00556 Antenna complex alpha/beta subunit LT988_08865 PF02276 Photosynthetic reaction centre cytochrome C subunit LT988_08870 PF00124 Photosynthetic reaction centre protein LT988_08875 PF00124 Photosynthetic reaction centre protein LT988_08880 PF00556 Antenna complex alpha/beta subunit LT988_08885 PF00556 Antenna complex alpha/beta subunit LT988_08895 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_08895 PF08369 Proto-chlorophyllide reductase 57 kD subunit LT988_08900 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_08905 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LT988_08910 PF08240 Alcohol dehydrogenase GroES-like domain LT988_08915 PF16864 Dimerisation domain LT988_08915 PF00891 O-methyltransferase domain LT988_08920 PF00348 Polyprenyl synthetase LT988_08925 PF01593 Flavin containing amine oxidoreductase LT988_08935 PF00501 AMP-binding enzyme LT988_08935 PF13193 AMP-binding enzyme C-terminal domain LT988_08940 PF02830 V4R domain LT988_08945 PF06969 HemN C-terminal domain LT988_08945 PF04055 Radical SAM superfamily LT988_08950 PF04055 Radical SAM superfamily LT988_08950 PF02310 B12 binding domain LT988_08955 PF12291 Protein of unknown function (DUF3623) LT988_08965 PF03703 Bacterial PH domain LT988_08970 PF05239 PRC-barrel domain LT988_08970 PF03967 Photosynthetic reaction centre, H-chain N-terminal region LT988_08975 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus LT988_08975 PF05175 Methyltransferase small domain LT988_08980 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LT988_08985 PF02514 CobN/Magnesium Chelatase LT988_08985 PF11965 Domain of unknown function (DUF3479) LT988_08990 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_08990 PF08369 Proto-chlorophyllide reductase 57 kD subunit LT988_08995 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_09000 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) LT988_09005 PF02954 Bacterial regulatory protein, Fis family LT988_09005 PF13188 PAS domain LT988_09005 PF13426 PAS domain LT988_09010 PF01040 UbiA prenyltransferase family LT988_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_09025 PF00512 His Kinase A (phospho-acceptor) domain LT988_09025 PF08446 PAS fold LT988_09025 PF00360 Phytochrome region LT988_09025 PF01590 GAF domain LT988_09030 PF13188 PAS domain LT988_09030 PF13426 PAS domain LT988_09030 PF02954 Bacterial regulatory protein, Fis family LT988_09040 PF03309 Type III pantothenate kinase LT988_09045 PF02237 Biotin protein ligase C terminal domain LT988_09045 PF03099 Biotin/lipoate A/B protein ligase family LT988_09045 PF08279 HTH domain LT988_09055 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LT988_09060 PF00271 Helicase conserved C-terminal domain LT988_09060 PF00270 DEAD/DEAH box helicase LT988_09075 PF02547 Queuosine biosynthesis protein LT988_09080 PF07075 Protein of unknown function (DUF1343) LT988_09085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_09085 PF00512 His Kinase A (phospho-acceptor) domain LT988_09085 PF00672 HAMP domain LT988_09090 PF00486 Transcriptional regulatory protein, C terminal LT988_09090 PF00072 Response regulator receiver domain LT988_09095 PF13180 PDZ domain LT988_09130 PF03707 Bacterial signalling protein N terminal repeat LT988_09130 PF00990 Diguanylate cyclase, GGDEF domain LT988_09130 PF00563 EAL domain LT988_09135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LT988_09135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LT988_09140 PF02754 Cysteine-rich domain LT988_09140 PF13183 4Fe-4S dicluster domain LT988_09145 PF01565 FAD binding domain LT988_09150 PF07499 RuvA, C-terminal domain LT988_09150 PF01330 RuvA N terminal domain LT988_09155 PF02075 Crossover junction endodeoxyribonuclease RuvC LT988_09160 PF01709 Transcriptional regulator LT988_09175 PF07072 Cell division protein LT988_09180 PF03884 DNA gyrase inhibitor YacG LT988_09185 PF00293 NUDIX domain LT988_09190 PF01960 ArgJ family LT988_09195 PF07517 SecA DEAD-like domain LT988_09195 PF07516 SecA Wing and Scaffold domain LT988_09195 PF02810 SEC-C motif LT988_09195 PF01043 SecA preprotein cross-linking domain LT988_09200 PF01476 LysM domain LT988_09200 PF08525 Opacity-associated protein A N-terminal motif LT988_09200 PF01551 Peptidase family M23 LT988_09210 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LT988_09215 PF12327 FtsZ family, C-terminal domain LT988_09215 PF00091 Tubulin/FtsZ family, GTPase domain LT988_09220 PF02491 SHS2 domain inserted in FTSA LT988_09225 PF03799 Cell division protein FtsQ LT988_09225 PF08478 POTRA domain, FtsQ-type LT988_09230 PF07478 D-ala D-ala ligase C-terminus LT988_09230 PF01820 D-ala D-ala ligase N-terminus LT988_09235 PF01565 FAD binding domain LT988_09235 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LT988_09240 PF01225 Mur ligase family, catalytic domain LT988_09240 PF02875 Mur ligase family, glutamate ligase domain LT988_09240 PF08245 Mur ligase middle domain LT988_09245 PF03033 Glycosyltransferase family 28 N-terminal domain LT988_09245 PF04101 Glycosyltransferase family 28 C-terminal domain LT988_09250 PF01098 Cell cycle protein LT988_09255 PF08245 Mur ligase middle domain LT988_09255 PF02875 Mur ligase family, glutamate ligase domain LT988_09260 PF00953 Glycosyl transferase family 4 LT988_09260 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LT988_09265 PF01225 Mur ligase family, catalytic domain LT988_09265 PF02875 Mur ligase family, glutamate ligase domain LT988_09265 PF08245 Mur ligase middle domain LT988_09270 PF01225 Mur ligase family, catalytic domain LT988_09270 PF08245 Mur ligase middle domain LT988_09270 PF02875 Mur ligase family, glutamate ligase domain LT988_09275 PF03717 Penicillin-binding Protein dimerisation domain LT988_09275 PF00905 Penicillin binding protein transpeptidase domain LT988_09280 PF04999 Cell division protein FtsL LT988_09285 PF01795 MraW methylase family LT988_09290 PF02381 MraZ protein, putative antitoxin-like LT988_09300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LT988_09305 PF04348 LppC putative lipoprotein LT988_09310 PF02021 Uncharacterised protein family UPF0102 LT988_09315 PF04972 BON domain LT988_09320 PF01565 FAD binding domain LT988_09320 PF02913 FAD linked oxidases, C-terminal domain LT988_09325 PF01590 GAF domain LT988_09325 PF00391 PEP-utilising enzyme, mobile domain LT988_09325 PF02896 PEP-utilising enzyme, TIM barrel domain LT988_09325 PF05524 PEP-utilising enzyme, N-terminal LT988_09330 PF00293 NUDIX domain LT988_09350 PF00534 Glycosyl transferases group 1 LT988_09350 PF13439 Glycosyltransferase Family 4 LT988_09355 PF01569 PAP2 superfamily LT988_09365 PF03167 Uracil DNA glycosylase superfamily LT988_09370 PF00682 HMGL-like LT988_09370 PF08502 LeuA allosteric (dimerisation) domain LT988_09375 PF00004 ATPase family associated with various cellular activities (AAA) LT988_09375 PF17862 AAA+ lid domain LT988_09375 PF01434 Peptidase family M41 LT988_09380 PF01556 DnaJ C terminal domain LT988_09380 PF00226 DnaJ domain LT988_09390 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LT988_09390 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LT988_09400 PF01510 N-acetylmuramoyl-L-alanine amidase LT988_09415 PF01066 CDP-alcohol phosphatidyltransferase LT988_09425 PF00037 4Fe-4S binding domain LT988_09425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LT988_09425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LT988_09430 PF13237 4Fe-4S dicluster domain LT988_09430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LT988_09430 PF00384 Molybdopterin oxidoreductase LT988_09430 PF01568 Molydopterin dinucleotide binding domain LT988_09430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LT988_09435 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_09445 PF00374 Nickel-dependent hydrogenase LT988_09470 PF00923 Transaldolase/Fructose-6-phosphate aldolase LT988_09475 PF00398 Ribosomal RNA adenine dimethylase LT988_09480 PF00004 ATPase family associated with various cellular activities (AAA) LT988_09480 PF05362 Lon protease (S16) C-terminal proteolytic domain LT988_09480 PF02190 ATP-dependent protease La (LON) substrate-binding domain LT988_09485 PF04321 RmlD substrate binding domain LT988_09490 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LT988_09495 PF00483 Nucleotidyl transferase LT988_09500 PF16363 GDP-mannose 4,6 dehydratase LT988_09505 PF00436 Single-strand binding protein family LT988_09510 PF07690 Major Facilitator Superfamily LT988_09520 PF00005 ABC transporter LT988_09520 PF17755 UvrA DNA-binding domain LT988_09520 PF17760 UvrA interaction domain LT988_09535 PF02560 Cyanate lyase C-terminal domain LT988_09540 PF00005 ABC transporter LT988_09545 PF00528 Binding-protein-dependent transport system inner membrane component LT988_09560 PF00196 Bacterial regulatory proteins, luxR family LT988_09560 PF00072 Response regulator receiver domain LT988_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_09565 PF07730 Histidine kinase LT988_09565 PF05231 MASE1 LT988_09585 PF00270 DEAD/DEAH box helicase LT988_09585 PF00271 Helicase conserved C-terminal domain LT988_09585 PF00570 HRDC domain LT988_09585 PF16124 RecQ zinc-binding LT988_09585 PF09382 RQC domain LT988_09590 PF02541 Ppx/GppA phosphatase family LT988_09635 PF01329 Pterin 4 alpha carbinolamine dehydratase LT988_09645 PF01895 PhoU domain LT988_09650 PF00005 ABC transporter LT988_09655 PF00528 Binding-protein-dependent transport system inner membrane component LT988_09660 PF00528 Binding-protein-dependent transport system inner membrane component LT988_09675 PF13439 Glycosyltransferase Family 4 LT988_09675 PF00534 Glycosyl transferases group 1 LT988_09680 PF00692 dUTPase LT988_09690 PF10609 NUBPL iron-transfer P-loop NTPase LT988_09695 PF09334 tRNA synthetases class I (M) LT988_09695 PF01588 Putative tRNA binding domain LT988_09700 PF02508 Rnf-Nqr subunit, membrane protein LT988_09705 PF04060 Putative Fe-S cluster LT988_09710 PF10531 SLBB domain LT988_09710 PF13375 RnfC Barrel sandwich hybrid domain LT988_09710 PF12838 4Fe-4S dicluster domain LT988_09710 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LT988_09715 PF03116 NQR2, RnfD, RnfE family LT988_09720 PF04205 FMN-binding domain LT988_09725 PF02508 Rnf-Nqr subunit, membrane protein LT988_09730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_09730 PF00072 Response regulator receiver domain LT988_09730 PF01627 Hpt domain LT988_09730 PF00672 HAMP domain LT988_09730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_09730 PF00512 His Kinase A (phospho-acceptor) domain LT988_09735 PF00485 Phosphoribulokinase / Uridine kinase family LT988_09740 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LT988_09750 PF00571 CBS domain LT988_09750 PF03471 Transporter associated domain LT988_09755 PF02130 Uncharacterized protein family UPF0054 LT988_09775 PF04055 Radical SAM superfamily LT988_09775 PF01938 TRAM domain LT988_09775 PF00919 Uncharacterized protein family UPF0004 LT988_09795 PF00990 Diguanylate cyclase, GGDEF domain LT988_09795 PF00563 EAL domain LT988_09795 PF03707 Bacterial signalling protein N terminal repeat LT988_09815 PF13473 Cupredoxin-like domain LT988_09815 PF18764 Nitrous oxide reductase propeller repeat LT988_09815 PF18793 Nitrous oxide reductase propeller repeat 2 LT988_09820 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_09835 PF05048 Periplasmic copper-binding protein (NosD) LT988_09840 PF12838 4Fe-4S dicluster domain LT988_09840 PF12800 4Fe-4S binding domain LT988_09845 PF13237 4Fe-4S dicluster domain LT988_09845 PF12801 4Fe-4S binding domain LT988_09850 PF00005 ABC transporter LT988_09880 PF01420 Type I restriction modification DNA specificity domain LT988_09900 PF18766 SWI2/SNF2 ATPase LT988_09900 PF11867 Domain of unknown function (DUF3387) LT988_09900 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_09910 PF00155 Aminotransferase class I and II LT988_09915 PF04851 Type III restriction enzyme, res subunit LT988_09915 PF17757 UvrB interaction domain LT988_09915 PF12344 Ultra-violet resistance protein B LT988_09915 PF00271 Helicase conserved C-terminal domain LT988_09915 PF02151 UvrB/uvrC motif LT988_09925 PF01126 Heme oxygenase LT988_09930 PF00912 Transglycosylase LT988_09935 PF00793 DAHP synthetase I family LT988_09960 PF13085 2Fe-2S iron-sulfur cluster binding domain LT988_09960 PF13183 4Fe-4S dicluster domain LT988_09965 PF02910 Fumarate reductase flavoprotein C-term LT988_09965 PF00890 FAD binding domain LT988_09970 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LT988_09975 PF01171 PP-loop family LT988_09985 PF08659 KR domain LT988_09985 PF08240 Alcohol dehydrogenase GroES-like domain LT988_09985 PF00698 Acyl transferase domain LT988_09985 PF14765 Polyketide synthase dehydratase LT988_09985 PF00550 Phosphopantetheine attachment site LT988_09990 PF00795 Carbon-nitrogen hydrolase LT988_09990 PF00583 Acetyltransferase (GNAT) family LT988_10010 PF00117 Glutamine amidotransferase class-I LT988_10010 PF00425 chorismate binding enzyme LT988_10010 PF04715 Anthranilate synthase component I, N terminal region LT988_10015 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LT988_10020 PF00011 Hsp20/alpha crystallin family LT988_10025 PF13193 AMP-binding enzyme C-terminal domain LT988_10025 PF00501 AMP-binding enzyme LT988_10025 PF01553 Acyltransferase LT988_10030 PF07690 Major Facilitator Superfamily LT988_10035 PF00034 Cytochrome c LT988_10040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_10045 PF00144 Beta-lactamase LT988_10060 PF00474 Sodium:solute symporter family LT988_10090 PF02233 NAD(P) transhydrogenase beta subunit LT988_10095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LT988_10100 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LT988_10100 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LT988_10105 PF03618 Kinase/pyrophosphorylase LT988_10115 PF01455 HupF/HypC family LT988_10120 PF01750 Hydrogenase maturation protease LT988_10135 PF08239 Bacterial SH3 domain LT988_10140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LT988_10140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LT988_10145 PF00202 Aminotransferase class-III LT988_10215 PF00872 Transposase, Mutator family LT988_10235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LT988_10235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LT988_10245 PF00733 Asparagine synthase LT988_10245 PF13537 Glutamine amidotransferase domain LT988_10250 PF00462 Glutaredoxin LT988_10255 PF00929 Exonuclease LT988_10265 PF04333 MlaA lipoprotein LT988_10270 PF01979 Amidohydrolase family LT988_10280 PF01063 Amino-transferase class IV LT988_10285 PF08335 GlnD PII-uridylyltransferase LT988_10285 PF03710 Glutamate-ammonia ligase adenylyltransferase LT988_10290 PF01263 Aldose 1-epimerase LT988_10305 PF03441 FAD binding domain of DNA photolyase LT988_10305 PF00875 DNA photolyase LT988_10320 PF00011 Hsp20/alpha crystallin family LT988_10325 PF00011 Hsp20/alpha crystallin family LT988_10330 PF00158 Sigma-54 interaction domain LT988_10330 PF00072 Response regulator receiver domain LT988_10330 PF02954 Bacterial regulatory protein, Fis family LT988_10335 PF00512 His Kinase A (phospho-acceptor) domain LT988_10335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_10345 PF00989 PAS fold LT988_10350 PF00582 Universal stress protein family LT988_10360 PF00118 TCP-1/cpn60 chaperonin family LT988_10365 PF00166 Chaperonin 10 Kd subunit LT988_10370 PF04186 FxsA cytoplasmic membrane protein LT988_10375 PF03091 CutA1 divalent ion tolerance protein LT988_10380 PF11412 Disulphide bond corrector protein DsbC LT988_10380 PF02683 Cytochrome C biogenesis protein transmembrane region LT988_10385 PF08534 Redoxin LT988_10390 PF01220 Dehydroquinase class II LT988_10395 PF00364 Biotin-requiring enzyme LT988_10400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LT988_10400 PF00289 Biotin carboxylase, N-terminal domain LT988_10400 PF02785 Biotin carboxylase C-terminal domain LT988_10410 PF01207 Dihydrouridine synthase (Dus) LT988_10415 PF02954 Bacterial regulatory protein, Fis family LT988_10420 PF01808 AICARFT/IMPCHase bienzyme LT988_10420 PF02142 MGS-like domain LT988_10425 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LT988_10425 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_10430 PF02844 Phosphoribosylglycinamide synthetase, N domain LT988_10430 PF02843 Phosphoribosylglycinamide synthetase, C domain LT988_10430 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LT988_10435 PF00176 SNF2 family N-terminal domain LT988_10435 PF00271 Helicase conserved C-terminal domain LT988_10455 PF00872 Transposase, Mutator family LT988_10525 PF13333 Integrase core domain LT988_10525 PF00665 Integrase core domain LT988_10525 PF13276 HTH-like domain LT988_10545 PF00106 short chain dehydrogenase LT988_10550 PF09361 Phasin protein LT988_10555 PF05233 PHB accumulation regulatory domain LT988_10555 PF07879 PHB/PHA accumulation regulator DNA-binding domain LT988_10560 PF00108 Thiolase, N-terminal domain LT988_10560 PF02803 Thiolase, C-terminal domain LT988_10565 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) LT988_10570 PF00561 alpha/beta hydrolase fold LT988_10590 PF17863 AAA lid domain LT988_10590 PF07726 ATPase family associated with various cellular activities (AAA) LT988_10605 PF03099 Biotin/lipoate A/B protein ligase family LT988_10610 PF04359 Protein of unknown function (DUF493) LT988_10615 PF07943 Penicillin-binding protein 5, C-terminal domain LT988_10615 PF00768 D-alanyl-D-alanine carboxypeptidase LT988_10620 PF13406 Transglycosylase SLT domain LT988_10625 PF01098 Cell cycle protein LT988_10630 PF03717 Penicillin-binding Protein dimerisation domain LT988_10630 PF00905 Penicillin binding protein transpeptidase domain LT988_10640 PF04085 rod shape-determining protein MreC LT988_10650 PF04362 Bacterial Fe(2+) trafficking LT988_10660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_10700 PF00873 AcrB/AcrD/AcrF family LT988_10710 PF00085 Thioredoxin LT988_10720 PF00490 Delta-aminolevulinic acid dehydratase LT988_10725 PF08501 Shikimate dehydrogenase substrate binding domain LT988_10725 PF01488 Shikimate / quinate 5-dehydrogenase LT988_10725 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LT988_10730 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LT988_10730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LT988_10760 PF00149 Calcineurin-like phosphoesterase LT988_10765 PF00857 Isochorismatase family LT988_10795 PF01590 GAF domain LT988_10795 PF00158 Sigma-54 interaction domain LT988_10800 PF00403 Heavy-metal-associated domain LT988_10800 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_10800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_10805 PF00175 Oxidoreductase NAD-binding domain LT988_10805 PF00970 Oxidoreductase FAD-binding domain LT988_10805 PF00042 Globin LT988_10815 PF00857 Isochorismatase family LT988_10830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LT988_10845 PF00561 alpha/beta hydrolase fold LT988_10850 PF00561 alpha/beta hydrolase fold LT988_10865 PF00144 Beta-lactamase LT988_10880 PF00582 Universal stress protein family LT988_10885 PF00999 Sodium/hydrogen exchanger family LT988_10890 PF00689 Cation transporting ATPase, C-terminus LT988_10890 PF00690 Cation transporter/ATPase, N-terminus LT988_10925 PF09086 Domain of unknown function (DUF1924) LT988_10955 PF02525 Flavodoxin-like fold LT988_10960 PF02254 TrkA-N domain LT988_10960 PF00999 Sodium/hydrogen exchanger family LT988_10965 PF04241 Protein of unknown function (DUF423) LT988_10970 PF04452 RNA methyltransferase LT988_10980 PF00072 Response regulator receiver domain LT988_10985 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LT988_10985 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LT988_10990 PF02424 ApbE family LT988_10995 PF03544 Gram-negative bacterial TonB protein C-terminal LT988_11000 PF02622 Uncharacterized ACR, COG1678 LT988_11005 PF03652 Holliday junction resolvase LT988_11010 PF00156 Phosphoribosyl transferase domain LT988_11015 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LT988_11015 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LT988_11020 PF01979 Amidohydrolase family LT988_11030 PF01467 Cytidylyltransferase-like LT988_11030 PF00294 pfkB family carbohydrate kinase LT988_11035 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LT988_11045 PF00899 ThiF family LT988_11045 PF00581 Rhodanese-like domain LT988_11055 PF02254 TrkA-N domain LT988_11055 PF00999 Sodium/hydrogen exchanger family LT988_11060 PF00999 Sodium/hydrogen exchanger family LT988_11060 PF02254 TrkA-N domain LT988_11070 PF03109 ABC1 family LT988_11075 PF12343 Cold shock protein DEAD box A LT988_11075 PF00271 Helicase conserved C-terminal domain LT988_11075 PF03880 DbpA RNA binding domain LT988_11075 PF00270 DEAD/DEAH box helicase LT988_11085 PF00731 AIR carboxylase LT988_11090 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LT988_11090 PF02222 ATP-grasp domain LT988_11095 PF00563 EAL domain LT988_11095 PF03707 Bacterial signalling protein N terminal repeat LT988_11095 PF00990 Diguanylate cyclase, GGDEF domain LT988_11100 PF00563 EAL domain LT988_11100 PF03707 Bacterial signalling protein N terminal repeat LT988_11100 PF00990 Diguanylate cyclase, GGDEF domain LT988_11105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LT988_11105 PF00361 Proton-conducting membrane transporter LT988_11105 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LT988_11105 PF13244 Domain of unknown function (DUF4040) LT988_11110 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LT988_11115 PF00361 Proton-conducting membrane transporter LT988_11120 PF01899 Na+/H+ ion antiporter subunit LT988_11125 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LT988_11130 PF03334 Na+/H+ antiporter subunit LT988_11135 PF01968 Hydantoinase/oxoprolinase LT988_11135 PF05378 Hydantoinase/oxoprolinase N-terminal region LT988_11140 PF01610 Transposase LT988_11140 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LT988_11140 PF13542 Helix-turn-helix domain of transposase family ISL3 LT988_11155 PF00005 ABC transporter LT988_11165 PF12399 Branched-chain amino acid ATP-binding cassette transporter LT988_11165 PF00005 ABC transporter LT988_11175 PF02653 Branched-chain amino acid transport system / permease component LT988_11180 PF02954 Bacterial regulatory protein, Fis family LT988_11180 PF00158 Sigma-54 interaction domain LT988_11180 PF13188 PAS domain LT988_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_11195 PF03466 LysR substrate binding domain LT988_11200 PF00902 Sec-independent protein translocase protein (TatC) LT988_11205 PF02416 mttA/Hcf106 family LT988_11210 PF02416 mttA/Hcf106 family LT988_11215 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LT988_11220 PF01502 Phosphoribosyl-AMP cyclohydrolase LT988_11225 PF00977 Histidine biosynthesis protein LT988_11230 PF00475 Imidazoleglycerol-phosphate dehydratase LT988_11235 PF01180 Dihydroorotate dehydrogenase LT988_11250 PF00535 Glycosyl transferase family 2 LT988_11260 PF02637 GatB domain LT988_11260 PF02934 GatB/GatE catalytic domain LT988_11265 PF01425 Amidase LT988_11270 PF02686 Glu-tRNAGln amidotransferase C subunit LT988_11280 PF00589 Phage integrase family LT988_11365 PF00528 Binding-protein-dependent transport system inner membrane component LT988_11370 PF00528 Binding-protein-dependent transport system inner membrane component LT988_11375 PF17912 MalK OB fold domain LT988_11375 PF00005 ABC transporter LT988_11380 PF03030 Inorganic H+ pyrophosphatase LT988_11385 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LT988_11385 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_11395 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LT988_11395 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LT988_11395 PF01189 16S rRNA methyltransferase RsmB/F LT988_11400 PF02080 TrkA-C domain LT988_11400 PF18030 RimK PreATP-grasp domain LT988_11400 PF08443 RimK-like ATP-grasp domain LT988_11410 PF07687 Peptidase dimerisation domain LT988_11410 PF01546 Peptidase family M20/M25/M40 LT988_11415 PF04228 Putative neutral zinc metallopeptidase LT988_11430 PF14698 Argininosuccinate lyase C-terminal LT988_11430 PF00206 Lyase LT988_11435 PF04397 LytTr DNA-binding domain LT988_11435 PF00072 Response regulator receiver domain LT988_11445 PF13537 Glutamine amidotransferase domain LT988_11445 PF00733 Asparagine synthase LT988_11450 PF13439 Glycosyltransferase Family 4 LT988_11460 PF08448 PAS fold LT988_11460 PF08447 PAS fold LT988_11460 PF00563 EAL domain LT988_11460 PF00990 Diguanylate cyclase, GGDEF domain LT988_11465 PF13439 Glycosyltransferase Family 4 LT988_11465 PF00534 Glycosyl transferases group 1 LT988_11480 PF00534 Glycosyl transferases group 1 LT988_11480 PF13439 Glycosyltransferase Family 4 LT988_11490 PF03658 RnfH family Ubiquitin LT988_11495 PF02508 Rnf-Nqr subunit, membrane protein LT988_11500 PF04205 FMN-binding domain LT988_11505 PF03116 NQR2, RnfD, RnfE family LT988_11510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LT988_11510 PF13375 RnfC Barrel sandwich hybrid domain LT988_11510 PF13237 4Fe-4S dicluster domain LT988_11510 PF10531 SLBB domain LT988_11515 PF04060 Putative Fe-S cluster LT988_11520 PF02508 Rnf-Nqr subunit, membrane protein LT988_11525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_11525 PF00989 PAS fold LT988_11530 PF00158 Sigma-54 interaction domain LT988_11530 PF02954 Bacterial regulatory protein, Fis family LT988_11530 PF13185 GAF domain LT988_11540 PF00873 AcrB/AcrD/AcrF family LT988_11545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_11560 PF02311 AraC-like ligand binding domain LT988_11560 PF12833 Helix-turn-helix domain LT988_11565 PF00270 DEAD/DEAH box helicase LT988_11565 PF08494 DEAD/H associated LT988_11565 PF00271 Helicase conserved C-terminal domain LT988_11575 PF00563 EAL domain LT988_11575 PF00990 Diguanylate cyclase, GGDEF domain LT988_11575 PF08448 PAS fold LT988_11575 PF08447 PAS fold LT988_11580 PF00005 ABC transporter LT988_11580 PF00571 CBS domain LT988_11585 PF00528 Binding-protein-dependent transport system inner membrane component LT988_11590 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LT988_11600 PF02028 BCCT, betaine/carnitine/choline family transporter LT988_11635 PF01476 LysM domain LT988_11635 PF04972 BON domain LT988_11675 PF00072 Response regulator receiver domain LT988_11675 PF01627 Hpt domain LT988_11675 PF00512 His Kinase A (phospho-acceptor) domain LT988_11675 PF00672 HAMP domain LT988_11675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_11675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_11695 PF00990 Diguanylate cyclase, GGDEF domain LT988_11695 PF00072 Response regulator receiver domain LT988_11710 PF04255 Protein of unknown function (DUF433) LT988_11765 PF00196 Bacterial regulatory proteins, luxR family LT988_11765 PF00072 Response regulator receiver domain LT988_11770 PF00924 Mechanosensitive ion channel LT988_11775 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LT988_11775 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LT988_11775 PF06827 Zinc finger found in FPG and IleRS LT988_11795 PF00005 ABC transporter LT988_11805 PF00581 Rhodanese-like domain LT988_11810 PF00211 Adenylate and Guanylate cyclase catalytic domain LT988_11820 PF02769 AIR synthase related protein, C-terminal domain LT988_11820 PF00586 AIR synthase related protein, N-terminal domain LT988_11825 PF01924 Hydrogenase formation hypA family LT988_11830 PF01455 HupF/HypC family LT988_11840 PF05175 Methyltransferase small domain LT988_11855 PF00072 Response regulator receiver domain LT988_11855 PF00486 Transcriptional regulatory protein, C terminal LT988_11860 PF00672 HAMP domain LT988_11860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_11860 PF00512 His Kinase A (phospho-acceptor) domain LT988_11865 PF00578 AhpC/TSA family LT988_11880 PF00072 Response regulator receiver domain LT988_11880 PF01627 Hpt domain LT988_11880 PF00512 His Kinase A (phospho-acceptor) domain LT988_11880 PF00672 HAMP domain LT988_11880 PF17149 Periplasmic sensor domain found in signal transduction proteins LT988_11880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_11905 PF17284 Spermidine synthase tetramerisation domain LT988_11910 PF00909 Ammonium Transporter Family LT988_11915 PF00909 Ammonium Transporter Family LT988_11920 PF00543 Nitrogen regulatory protein P-II LT988_11930 PF04380 Membrane fusogenic activity LT988_11935 PF13335 Magnesium chelatase, subunit ChlI C-terminal LT988_11935 PF01078 Magnesium chelatase, subunit ChlI LT988_11940 PF00005 ABC transporter LT988_11940 PF12848 ABC transporter LT988_11945 PF00343 Carbohydrate phosphorylase LT988_11950 PF00072 Response regulator receiver domain LT988_11950 PF00486 Transcriptional regulatory protein, C terminal LT988_11960 PF01740 STAS domain LT988_11965 PF02563 Polysaccharide biosynthesis/export protein LT988_11985 PF00534 Glycosyl transferases group 1 LT988_11985 PF13439 Glycosyltransferase Family 4 LT988_12035 PF00534 Glycosyl transferases group 1 LT988_12035 PF13439 Glycosyltransferase Family 4 LT988_12040 PF00534 Glycosyl transferases group 1 LT988_12040 PF13439 Glycosyltransferase Family 4 LT988_12060 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_12065 PF03808 Glycosyl transferase WecB/TagA/CpsF family LT988_12070 PF02397 Bacterial sugar transferase LT988_12075 PF00483 Nucleotidyl transferase LT988_12110 PF03747 ADP-ribosylglycohydrolase LT988_12115 PF04891 NifQ LT988_12120 PF00111 2Fe-2S iron-sulfur cluster binding domain LT988_12125 PF00111 2Fe-2S iron-sulfur cluster binding domain LT988_12130 PF00258 Flavodoxin LT988_12130 PF00753 Metallo-beta-lactamase superfamily LT988_12135 PF03960 ArsC family LT988_12140 PF12838 4Fe-4S dicluster domain LT988_12145 PF02579 Dinitrogenase iron-molybdenum cofactor LT988_12145 PF04055 Radical SAM superfamily LT988_12150 PF06167 Glucose-regulated metallo-peptidase M90 LT988_12155 PF02630 SCO1/SenC LT988_12160 PF04314 Copper chaperone PCu(A)C LT988_12165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_12180 PF00563 EAL domain LT988_12180 PF00990 Diguanylate cyclase, GGDEF domain LT988_12180 PF00072 Response regulator receiver domain LT988_12185 PF01964 Radical SAM ThiC family LT988_12185 PF13667 ThiC-associated domain LT988_12195 PF00679 Elongation factor G C-terminus LT988_12195 PF00009 Elongation factor Tu GTP binding domain LT988_12195 PF03144 Elongation factor Tu domain 2 LT988_12200 PF00561 alpha/beta hydrolase fold LT988_12220 PF01636 Phosphotransferase enzyme family LT988_12225 PF04607 Region found in RelA / SpoT proteins LT988_12225 PF02824 TGS domain LT988_12225 PF13291 ACT domain LT988_12265 PF11842 Domain of unknown function (DUF3362) LT988_12265 PF04055 Radical SAM superfamily LT988_12265 PF08497 Radical SAM N-terminal LT988_12270 PF04542 Sigma-70 region 2 LT988_12270 PF04545 Sigma-70, region 4 LT988_12275 PF00072 Response regulator receiver domain LT988_12275 PF00486 Transcriptional regulatory protein, C terminal LT988_12280 PF00072 Response regulator receiver domain LT988_12280 PF08448 PAS fold LT988_12280 PF00512 His Kinase A (phospho-acceptor) domain LT988_12280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_12280 PF13188 PAS domain LT988_12285 PF00939 Sodium:sulfate symporter transmembrane region LT988_12290 PF18075 FtsX extracellular domain LT988_12295 PF00005 ABC transporter LT988_12300 PF02881 SRP54-type protein, helical bundle domain LT988_12300 PF00448 SRP54-type protein, GTPase domain LT988_12305 PF05193 Peptidase M16 inactive domain LT988_12305 PF00675 Insulinase (Peptidase family M16) LT988_12310 PF00675 Insulinase (Peptidase family M16) LT988_12310 PF05193 Peptidase M16 inactive domain LT988_12320 PF01467 Cytidylyltransferase-like LT988_12325 PF00037 4Fe-4S binding domain LT988_12350 PF00571 CBS domain LT988_12350 PF03471 Transporter associated domain LT988_12350 PF01595 Cyclin M transmembrane N-terminal domain LT988_12355 PF00571 CBS domain LT988_12355 PF03471 Transporter associated domain LT988_12355 PF01595 Cyclin M transmembrane N-terminal domain LT988_12370 PF01569 PAP2 superfamily LT988_12375 PF02814 UreE urease accessory protein, N-terminal domain LT988_12375 PF05194 UreE urease accessory protein, C-terminal domain LT988_12380 PF01730 UreF LT988_12385 PF02492 CobW/HypB/UreG, nucleotide-binding domain LT988_12390 PF02391 MoaE protein LT988_12410 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LT988_12415 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LT988_12415 PF02806 Alpha amylase, C-terminal all-beta domain LT988_12415 PF00128 Alpha amylase, catalytic domain LT988_12420 PF00483 Nucleotidyl transferase LT988_12425 PF05690 Thiazole biosynthesis protein ThiG LT988_12425 PF02597 ThiS family LT988_12430 PF05690 Thiazole biosynthesis protein ThiG LT988_12435 PF02390 Putative methyltransferase LT988_12440 PF08402 TOBE domain LT988_12440 PF00005 ABC transporter LT988_12445 PF03649 Uncharacterised protein family (UPF0014) LT988_12485 PF01728 FtsJ-like methyltransferase LT988_12505 PF17810 Arginine decarboxylase helical bundle domain LT988_12505 PF17944 Arginine decarboxylase C-terminal helical extension LT988_12505 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LT988_12510 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LT988_12515 PF02492 CobW/HypB/UreG, nucleotide-binding domain LT988_12530 PF00535 Glycosyl transferase family 2 LT988_12540 PF01370 NAD dependent epimerase/dehydratase family LT988_12570 PF00884 Sulfatase LT988_12635 PF01380 SIS domain LT988_12640 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_12640 PF12804 MobA-like NTP transferase domain LT988_12645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LT988_12650 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LT988_12650 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LT988_12655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_12655 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_12660 PF00231 ATP synthase LT988_12665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_12665 PF00306 ATP synthase alpha/beta chain, C terminal domain LT988_12665 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_12670 PF00213 ATP synthase delta (OSCP) subunit LT988_12675 PF00430 ATP synthase B/B' CF(0) LT988_12680 PF00137 ATP synthase subunit C LT988_12685 PF00119 ATP synthase A chain LT988_12690 PF03899 ATP synthase I chain LT988_12695 PF17762 HTH domain found in ParB protein LT988_12695 PF02195 ParB-like nuclease domain LT988_12700 PF13614 AAA domain LT988_12705 PF02527 rRNA small subunit methyltransferase G LT988_12710 PF01134 Glucose inhibited division protein A LT988_12710 PF13932 GidA associated domain LT988_12715 PF17863 AAA lid domain LT988_12715 PF07726 ATPase family associated with various cellular activities (AAA) LT988_12730 PF12631 MnmE helical domain LT988_12730 PF10396 GTP-binding protein TrmE N-terminus LT988_12730 PF01926 50S ribosome-binding GTPase LT988_12735 PF14849 YidC periplasmic domain LT988_12735 PF02096 60Kd inner membrane protein LT988_12740 PF01809 Putative membrane protein insertion efficiency factor LT988_12745 PF00825 Ribonuclease P LT988_12750 PF00468 Ribosomal protein L34 LT988_12755 PF00308 Bacterial dnaA protein LT988_12755 PF08299 Bacterial dnaA protein helix-turn-helix LT988_12755 PF11638 DnaA N-terminal domain LT988_12760 PF00712 DNA polymerase III beta subunit, N-terminal domain LT988_12760 PF02767 DNA polymerase III beta subunit, central domain LT988_12760 PF02768 DNA polymerase III beta subunit, C-terminal domain LT988_12765 PF02463 RecF/RecN/SMC N terminal domain LT988_12770 PF01751 Toprim domain LT988_12770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_12770 PF18053 DNA gyrase B subunit insert domain LT988_12770 PF00986 DNA gyrase B subunit, carboxyl terminus LT988_12770 PF00204 DNA gyrase B LT988_12785 PF05746 DALR anticodon binding domain LT988_12785 PF02092 Glycyl-tRNA synthetase beta subunit LT988_12790 PF02091 Glycyl-tRNA synthetase alpha subunit LT988_12795 PF01545 Cation efflux family LT988_12795 PF16916 Dimerisation domain of Zinc Transporter LT988_12800 PF00120 Glutamine synthetase, catalytic domain LT988_12800 PF03951 Glutamine synthetase, beta-Grasp domain LT988_12810 PF00989 PAS fold LT988_12810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_12810 PF00512 His Kinase A (phospho-acceptor) domain LT988_12815 PF02954 Bacterial regulatory protein, Fis family LT988_12815 PF00072 Response regulator receiver domain LT988_12815 PF00158 Sigma-54 interaction domain LT988_12830 PF00588 SpoU rRNA Methylase family LT988_12835 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LT988_12835 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LT988_12840 PF02556 Preprotein translocase subunit SecB LT988_12845 PF12368 Rhodanase C-terminal LT988_12845 PF17773 UPF0176 acylphosphatase like domain LT988_12845 PF00581 Rhodanese-like domain LT988_12855 PF01551 Peptidase family M23 LT988_12860 PF13180 PDZ domain LT988_12860 PF03572 Peptidase family S41 LT988_12865 PF01965 DJ-1/PfpI family LT988_12870 PF00953 Glycosyl transferase family 4 LT988_12875 PF02719 Polysaccharide biosynthesis protein LT988_12880 PF00437 Type II/IV secretion system protein LT988_12880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LT988_12885 PF00482 Type II secretion system (T2SS), protein F LT988_12890 PF07963 Prokaryotic N-terminal methylation motif LT988_12890 PF08334 Type II secretion system (T2SS), protein G LT988_12895 PF12019 Type II transport protein GspH LT988_12900 PF07963 Prokaryotic N-terminal methylation motif LT988_12910 PF03934 Type II secretion system (T2SS), protein K LT988_12930 PF03958 Bacterial type II/III secretion system short domain LT988_12930 PF00263 Bacterial type II and III secretion system protein LT988_12935 PF00437 Type II/IV secretion system protein LT988_12955 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_12955 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LT988_12960 PF00310 Glutamine amidotransferases class-II LT988_12960 PF04898 Glutamate synthase central domain LT988_12960 PF01645 Conserved region in glutamate synthase LT988_12960 PF01493 GXGXG motif LT988_12965 PF01761 3-dehydroquinate synthase LT988_12970 PF01202 Shikimate kinase LT988_12975 PF11741 AMIN domain LT988_12975 PF00263 Bacterial type II and III secretion system protein LT988_12975 PF03958 Bacterial type II/III secretion system short domain LT988_12975 PF07660 Secretin and TonB N terminus short domain LT988_12980 PF04351 Pilus assembly protein, PilP LT988_12985 PF04350 Pilus assembly protein, PilO LT988_12990 PF05137 Fimbrial assembly protein (PilN) LT988_12995 PF11104 Type IV pilus assembly protein PilM; LT988_13005 PF00285 Citrate synthase, C-terminal domain LT988_13010 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LT988_13010 PF00056 lactate/malate dehydrogenase, NAD binding domain LT988_13015 PF01197 Ribosomal protein L31 LT988_13020 PF06969 HemN C-terminal domain LT988_13020 PF04055 Radical SAM superfamily LT988_13025 PF03480 Bacterial extracellular solute-binding protein, family 7 LT988_13030 PF00575 S1 RNA binding domain LT988_13035 PF13361 UvrD-like helicase C-terminal domain LT988_13035 PF00580 UvrD/REP helicase N-terminal domain LT988_13040 PF01208 Uroporphyrinogen decarboxylase (URO-D) LT988_13045 PF06039 Malate:quinone oxidoreductase (Mqo) LT988_13050 PF01068 ATP dependent DNA ligase domain LT988_13050 PF14743 DNA ligase OB-like domain LT988_13065 PF00873 AcrB/AcrD/AcrF family LT988_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_13095 PF00072 Response regulator receiver domain LT988_13095 PF00486 Transcriptional regulatory protein, C terminal LT988_13110 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system LT988_13120 PF01545 Cation efflux family LT988_13120 PF16916 Dimerisation domain of Zinc Transporter LT988_13155 PF00486 Transcriptional regulatory protein, C terminal LT988_13155 PF00072 Response regulator receiver domain LT988_13160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_13185 PF00990 Diguanylate cyclase, GGDEF domain LT988_13210 PF00255 Glutathione peroxidase LT988_13215 PF12146 Serine aminopeptidase, S33 LT988_13235 PF04357 TamB, inner membrane protein subunit of TAM complex LT988_13245 PF03471 Transporter associated domain LT988_13245 PF00999 Sodium/hydrogen exchanger family LT988_13245 PF02080 TrkA-C domain LT988_13260 PF04002 RadC-like JAB domain LT988_13265 PF04127 DNA / pantothenate metabolism flavoprotein LT988_13265 PF02441 Flavoprotein LT988_13270 PF00692 dUTPase LT988_13275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LT988_13275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LT988_13275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LT988_13275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LT988_13280 PF00696 Amino acid kinase family LT988_13285 PF00156 Phosphoribosyl transferase domain LT988_13300 PF02594 Uncharacterised ACR, YggU family COG1872 LT988_13305 PF02325 YGGT family LT988_13310 PF14748 Pyrroline-5-carboxylate reductase dimerisation LT988_13310 PF03807 NADP oxidoreductase coenzyme F420-dependent LT988_13315 PF01168 Alanine racemase, N-terminal domain LT988_13320 PF01725 Ham1 family LT988_13325 PF01138 3' exoribonuclease family, domain 1 LT988_13325 PF03725 3' exoribonuclease family, domain 2 LT988_13330 PF03793 PASTA domain LT988_13330 PF00069 Protein kinase domain LT988_13335 PF08340 Domain of unknown function (DUF1732) LT988_13335 PF03755 YicC-like family, N-terminal region LT988_13345 PF01590 GAF domain LT988_13345 PF00158 Sigma-54 interaction domain LT988_13350 PF00625 Guanylate kinase LT988_13360 PF04607 Region found in RelA / SpoT proteins LT988_13360 PF02824 TGS domain LT988_13360 PF13291 ACT domain LT988_13370 PF01218 Coproporphyrinogen III oxidase LT988_13380 PF01804 Penicillin amidase LT988_13385 PF02580 D-Tyr-tRNA(Tyr) deacylase LT988_13405 PF02899 Phage integrase, N-terminal SAM-like domain LT988_13405 PF00589 Phage integrase family LT988_13415 PF01678 Diaminopimelate epimerase LT988_13425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LT988_13425 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LT988_13450 PF01850 PIN domain LT988_13470 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LT988_13470 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LT988_13470 PF06827 Zinc finger found in FPG and IleRS LT988_13480 PF00270 DEAD/DEAH box helicase LT988_13480 PF00271 Helicase conserved C-terminal domain LT988_13480 PF18074 Primosomal protein N C-terminal domain LT988_13480 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LT988_13480 PF17764 3′ DNA-binding domain (3′BD) LT988_13490 PF03881 Fructosamine kinase LT988_13500 PF00679 Elongation factor G C-terminus LT988_13500 PF14492 Elongation Factor G, domain II LT988_13500 PF03764 Elongation factor G, domain IV LT988_13500 PF00009 Elongation factor Tu GTP binding domain LT988_13500 PF03144 Elongation factor Tu domain 2 LT988_13505 PF17969 L,D-transpeptidase C-terminal domain LT988_13505 PF03734 L,D-transpeptidase catalytic domain LT988_13540 PF09382 RQC domain LT988_13540 PF00270 DEAD/DEAH box helicase LT988_13540 PF00271 Helicase conserved C-terminal domain LT988_13540 PF00570 HRDC domain LT988_13540 PF16124 RecQ zinc-binding LT988_13545 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LT988_13545 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LT988_13555 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LT988_13555 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LT988_13560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_13565 PF00583 Acetyltransferase (GNAT) family LT988_13565 PF13380 CoA binding domain LT988_13565 PF13607 Succinyl-CoA ligase like flavodoxin domain LT988_13570 PF00563 EAL domain LT988_13570 PF00990 Diguanylate cyclase, GGDEF domain LT988_13570 PF00360 Phytochrome region LT988_13570 PF01590 GAF domain LT988_13580 PF02589 LUD domain LT988_13585 PF11870 Domain of unknown function (DUF3390) LT988_13585 PF13183 4Fe-4S dicluster domain LT988_13585 PF02589 LUD domain LT988_13600 PF02754 Cysteine-rich domain LT988_13605 PF00437 Type II/IV secretion system protein LT988_13610 PF00437 Type II/IV secretion system protein LT988_13620 PF00593 TonB dependent receptor LT988_13620 PF07715 TonB-dependent Receptor Plug Domain LT988_13625 PF02661 Fic/DOC family LT988_13630 PF03976 Polyphosphate kinase 2 (PPK2) LT988_13640 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_13640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_13645 PF00672 HAMP domain LT988_13645 PF02743 Cache domain LT988_13645 PF00211 Adenylate and Guanylate cyclase catalytic domain LT988_13660 PF03616 Sodium/glutamate symporter LT988_13670 PF03600 Citrate transporter LT988_13670 PF02080 TrkA-C domain LT988_13685 PF02253 Phospholipase A1 LT988_13695 PF05524 PEP-utilising enzyme, N-terminal LT988_13695 PF02896 PEP-utilising enzyme, TIM barrel domain LT988_13695 PF00381 PTS HPr component phosphorylation site LT988_13695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LT988_13695 PF00391 PEP-utilising enzyme, mobile domain LT988_13700 PF00367 phosphotransferase system, EIIB LT988_13700 PF02378 Phosphotransferase system, EIIC LT988_13705 PF05685 Putative restriction endonuclease LT988_13715 PF07498 Rho termination factor, N-terminal domain LT988_13715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_13715 PF07497 Rho termination factor, RNA-binding domain LT988_13720 PF00085 Thioredoxin LT988_13725 PF00270 DEAD/DEAH box helicase LT988_13725 PF00271 Helicase conserved C-terminal domain LT988_13725 PF12300 ATP-dependent RNA helicase RhlB LT988_13730 PF13419 Haloacid dehalogenase-like hydrolase LT988_13735 PF00293 NUDIX domain LT988_13745 PF07085 DRTGG domain LT988_13745 PF01515 Phosphate acetyl/butaryl transferase LT988_13750 PF00871 Acetokinase family LT988_13755 PF00691 OmpA family LT988_13755 PF05736 OprF membrane domain LT988_13760 PF01774 UreD urease accessory protein LT988_13765 PF00547 Urease, gamma subunit LT988_13770 PF00699 Urease beta subunit LT988_13775 PF00449 Urease alpha-subunit, N-terminal domain LT988_13775 PF01979 Amidohydrolase family LT988_13780 PF05746 DALR anticodon binding domain LT988_13780 PF00750 tRNA synthetases class I (R) LT988_13780 PF03485 Arginyl tRNA synthetase N terminal domain LT988_13790 PF01895 PhoU domain LT988_13795 PF00300 Histidine phosphatase superfamily (branch 1) LT988_13800 PF00563 EAL domain LT988_13800 PF00990 Diguanylate cyclase, GGDEF domain LT988_13800 PF03707 Bacterial signalling protein N terminal repeat LT988_13805 PF08448 PAS fold LT988_13805 PF01339 CheB methylesterase LT988_13805 PF01739 CheR methyltransferase, SAM binding domain LT988_13805 PF03705 CheR methyltransferase, all-alpha domain LT988_13810 PF07536 HWE histidine kinase LT988_13810 PF13426 PAS domain LT988_13810 PF13581 Histidine kinase-like ATPase domain LT988_13820 PF00361 Proton-conducting membrane transporter LT988_13825 PF00361 Proton-conducting membrane transporter LT988_13845 PF03334 Na+/H+ antiporter subunit LT988_13875 PF00012 Hsp70 protein LT988_13885 PF00176 SNF2 family N-terminal domain LT988_13885 PF00271 Helicase conserved C-terminal domain LT988_13885 PF12419 SNF2 Helicase protein LT988_13890 PF01476 LysM domain LT988_13890 PF04972 BON domain LT988_13935 PF05685 Putative restriction endonuclease LT988_13940 PF00155 Aminotransferase class I and II LT988_13945 PF00815 Histidinol dehydrogenase LT988_13950 PF01634 ATP phosphoribosyltransferase LT988_13955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LT988_13970 PF02470 MlaD protein LT988_13975 PF02405 Permease MlaE LT988_13980 PF00005 ABC transporter LT988_13990 PF00571 CBS domain LT988_13990 PF01380 SIS domain LT988_14010 PF00005 ABC transporter LT988_14010 PF12399 Branched-chain amino acid ATP-binding cassette transporter LT988_14015 PF00309 Sigma-54 factor, Activator interacting domain (AID) LT988_14015 PF04963 Sigma-54 factor, core binding domain LT988_14015 PF04552 Sigma-54, DNA binding domain LT988_14020 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LT988_14025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LT988_14030 PF07475 HPr Serine kinase C-terminal domain LT988_14030 PF02603 HPr Serine kinase N terminus LT988_14035 PF03668 P-loop ATPase protein family LT988_14045 PF00381 PTS HPr component phosphorylation site LT988_14050 PF05524 PEP-utilising enzyme, N-terminal LT988_14050 PF00391 PEP-utilising enzyme, mobile domain LT988_14050 PF02896 PEP-utilising enzyme, TIM barrel domain LT988_14055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LT988_14055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LT988_14055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LT988_14055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LT988_14065 PF01926 50S ribosome-binding GTPase LT988_14075 PF01967 MoaC family LT988_14080 PF00719 Inorganic pyrophosphatase LT988_14085 PF00365 Phosphofructokinase LT988_14090 PF01494 FAD binding domain LT988_14095 PF01494 FAD binding domain LT988_14100 PF00557 Metallopeptidase family M24 LT988_14100 PF05195 Aminopeptidase P, N-terminal domain LT988_14105 PF03695 Uncharacterised protein family (UPF0149) LT988_14115 PF05164 Cell division protein ZapA LT988_14125 PF01812 5-formyltetrahydrofolate cyclo-ligase family LT988_14130 PF00291 Pyridoxal-phosphate dependent enzyme LT988_14130 PF00585 C-terminal regulatory domain of Threonine dehydratase LT988_14135 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LT988_14145 PF00267 Gram-negative porin LT988_14155 PF00380 Ribosomal protein S9/S16 LT988_14160 PF00572 Ribosomal protein L13 LT988_14175 PF03232 Ubiquinone biosynthesis protein COQ7 LT988_14180 PF02675 S-adenosylmethionine decarboxylase LT988_14190 PF13545 Crp-like helix-turn-helix domain LT988_14190 PF00027 Cyclic nucleotide-binding domain LT988_14195 PF00218 Indole-3-glycerol phosphate synthase LT988_14200 PF02885 Glycosyl transferase family, helical bundle domain LT988_14200 PF00591 Glycosyl transferase family, a/b domain LT988_14205 PF00117 Glutamine amidotransferase class-I LT988_14215 PF00425 chorismate binding enzyme LT988_14215 PF04715 Anthranilate synthase component I, N terminal region LT988_14220 PF13419 Haloacid dehalogenase-like hydrolase LT988_14225 PF00834 Ribulose-phosphate 3 epimerase family LT988_14230 PF00226 DnaJ domain LT988_14230 PF05099 Tellurite resistance protein TerB LT988_14260 PF00672 HAMP domain LT988_14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_14260 PF00512 His Kinase A (phospho-acceptor) domain LT988_14265 PF00486 Transcriptional regulatory protein, C terminal LT988_14265 PF00072 Response regulator receiver domain LT988_14275 PF00248 Aldo/keto reductase family LT988_14285 PF00294 pfkB family carbohydrate kinase LT988_14290 PF03781 Sulfatase-modifying factor enzyme 1 LT988_14325 PF00561 alpha/beta hydrolase fold LT988_14330 PF00924 Mechanosensitive ion channel LT988_14335 PF01292 Prokaryotic cytochrome b561 LT988_14340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_14340 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_14390 PF04012 PspA/IM30 family LT988_14395 PF00072 Response regulator receiver domain LT988_14395 PF00486 Transcriptional regulatory protein, C terminal LT988_14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_14400 PF00989 PAS fold LT988_14400 PF00672 HAMP domain LT988_14400 PF00512 His Kinase A (phospho-acceptor) domain LT988_14410 PF04151 Bacterial pre-peptidase C-terminal domain LT988_14410 PF00082 Subtilase family LT988_14410 PF05922 Peptidase inhibitor I9 LT988_14420 PF13580 SIS domain LT988_14450 PF00535 Glycosyl transferase family 2 LT988_14450 PF00795 Carbon-nitrogen hydrolase LT988_14460 PF00534 Glycosyl transferases group 1 LT988_14460 PF13439 Glycosyltransferase Family 4 LT988_14520 PF13439 Glycosyltransferase Family 4 LT988_14520 PF00534 Glycosyl transferases group 1 LT988_14530 PF00535 Glycosyl transferase family 2 LT988_14540 PF00535 Glycosyl transferase family 2 LT988_14540 PF00534 Glycosyl transferases group 1 LT988_14545 PF00535 Glycosyl transferase family 2 LT988_14550 PF00005 ABC transporter LT988_14550 PF00664 ABC transporter transmembrane region LT988_14560 PF00534 Glycosyl transferases group 1 LT988_14560 PF13439 Glycosyltransferase Family 4 LT988_14600 PF00639 PPIC-type PPIASE domain LT988_14600 PF09312 SurA N-terminal domain LT988_14620 PF00005 ABC transporter LT988_14620 PF00664 ABC transporter transmembrane region LT988_14630 PF00109 Beta-ketoacyl synthase, N-terminal domain LT988_14630 PF16197 Ketoacyl-synthetase C-terminal extension LT988_14630 PF00698 Acyl transferase domain LT988_14630 PF14765 Polyketide synthase dehydratase LT988_14630 PF00550 Phosphopantetheine attachment site LT988_14630 PF08659 KR domain LT988_14630 PF02801 Beta-ketoacyl synthase, C-terminal domain LT988_14630 PF08240 Alcohol dehydrogenase GroES-like domain LT988_14640 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LT988_14645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LT988_14645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LT988_14650 PF04794 YdjC-like protein LT988_14665 PF02801 Beta-ketoacyl synthase, C-terminal domain LT988_14665 PF08659 KR domain LT988_14665 PF00550 Phosphopantetheine attachment site LT988_14665 PF16197 Ketoacyl-synthetase C-terminal extension LT988_14665 PF00698 Acyl transferase domain LT988_14665 PF00109 Beta-ketoacyl synthase, N-terminal domain LT988_14680 PF14765 Polyketide synthase dehydratase LT988_14680 PF00109 Beta-ketoacyl synthase, N-terminal domain LT988_14680 PF08659 KR domain LT988_14680 PF02801 Beta-ketoacyl synthase, C-terminal domain LT988_14680 PF16197 Ketoacyl-synthetase C-terminal extension LT988_14680 PF00698 Acyl transferase domain LT988_14680 PF08240 Alcohol dehydrogenase GroES-like domain LT988_14680 PF00550 Phosphopantetheine attachment site LT988_14685 PF00501 AMP-binding enzyme LT988_14685 PF13193 AMP-binding enzyme C-terminal domain LT988_14685 PF00668 Condensation domain LT988_14685 PF00550 Phosphopantetheine attachment site LT988_14690 PF00891 O-methyltransferase domain LT988_14695 PF01648 4'-phosphopantetheinyl transferase superfamily LT988_14715 PF00535 Glycosyl transferase family 2 LT988_14735 PF00535 Glycosyl transferase family 2 LT988_14740 PF05045 Rhamnan synthesis protein F LT988_14740 PF14307 Glycosyltransferase WbsX LT988_14760 PF01061 ABC-2 type transporter LT988_14765 PF00005 ABC transporter LT988_14770 PF03109 ABC1 family LT988_14780 PF01209 ubiE/COQ5 methyltransferase family LT988_14790 PF07724 AAA domain (Cdc48 subfamily) LT988_14790 PF10431 C-terminal, D2-small domain, of ClpB protein LT988_14790 PF00004 ATPase family associated with various cellular activities (AAA) LT988_14795 PF00227 Proteasome subunit LT988_14800 PF13439 Glycosyltransferase Family 4 LT988_14810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LT988_14815 PF00535 Glycosyl transferase family 2 LT988_14830 PF05523 WxcM-like, C-terminal LT988_14845 PF01219 Prokaryotic diacylglycerol kinase LT988_14850 PF02347 Glycine cleavage system P-protein LT988_14855 PF08534 Redoxin LT988_14860 PF02347 Glycine cleavage system P-protein LT988_14865 PF01597 Glycine cleavage H-protein LT988_14870 PF01571 Aminomethyltransferase folate-binding domain LT988_14870 PF08669 Glycine cleavage T-protein C-terminal barrel domain LT988_14885 PF00133 tRNA synthetases class I (I, L, M and V) LT988_14885 PF13603 Leucyl-tRNA synthetase, Domain 2 LT988_14885 PF08264 Anticodon-binding domain of tRNA LT988_14900 PF00171 Aldehyde dehydrogenase family LT988_14905 PF01467 Cytidylyltransferase-like LT988_14925 PF00186 Dihydrofolate reductase LT988_14930 PF00149 Calcineurin-like phosphoesterase LT988_14935 PF04379 ApaG domain LT988_14955 PF02899 Phage integrase, N-terminal SAM-like domain LT988_14955 PF00589 Phage integrase family LT988_14960 PF00589 Phage integrase family LT988_14965 PF02899 Phage integrase, N-terminal SAM-like domain LT988_14965 PF00589 Phage integrase family LT988_14980 PF00872 Transposase, Mutator family LT988_14985 PF04245 37-kD nucleoid-associated bacterial protein LT988_15020 PF00589 Phage integrase family LT988_15020 PF02899 Phage integrase, N-terminal SAM-like domain LT988_15025 PF00589 Phage integrase family LT988_15030 PF02899 Phage integrase, N-terminal SAM-like domain LT988_15030 PF00589 Phage integrase family LT988_15100 PF04972 BON domain LT988_15110 PF05532 CsbD-like LT988_15115 PF00990 Diguanylate cyclase, GGDEF domain LT988_15115 PF00563 EAL domain LT988_15115 PF08447 PAS fold LT988_15115 PF08448 PAS fold LT988_15120 PF01339 CheB methylesterase LT988_15120 PF01739 CheR methyltransferase, SAM binding domain LT988_15120 PF03705 CheR methyltransferase, all-alpha domain LT988_15120 PF08448 PAS fold LT988_15130 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LT988_15135 PF00639 PPIC-type PPIASE domain LT988_15135 PF09312 SurA N-terminal domain LT988_15140 PF04453 LPS transport system D LT988_15145 PF01636 Phosphotransferase enzyme family LT988_15150 PF13180 PDZ domain LT988_15155 PF01784 NIF3 (NGG1p interacting factor 3) LT988_15160 PF00355 Rieske [2Fe-2S] domain LT988_15160 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LT988_15165 PF00033 Cytochrome b/b6/petB LT988_15165 PF00032 Cytochrome b(C-terminal)/b6/petD LT988_15170 PF02167 Cytochrome C1 family LT988_15175 PF02798 Glutathione S-transferase, N-terminal domain LT988_15175 PF00043 Glutathione S-transferase, C-terminal domain LT988_15180 PF04386 Stringent starvation protein B LT988_15195 PF00893 Small Multidrug Resistance protein LT988_15200 PF01594 AI-2E family transporter LT988_15235 PF04303 PrpF protein LT988_15240 PF04480 Protein of unknown function (DUF559) LT988_15245 PF00330 Aconitase family (aconitate hydratase) LT988_15245 PF00694 Aconitase C-terminal domain LT988_15250 PF00285 Citrate synthase, C-terminal domain LT988_15260 PF07729 FCD domain LT988_15260 PF00392 Bacterial regulatory proteins, gntR family LT988_15265 PF16177 Acetyl-coenzyme A synthetase N-terminus LT988_15265 PF00501 AMP-binding enzyme LT988_15265 PF13193 AMP-binding enzyme C-terminal domain LT988_15270 PF00202 Aminotransferase class-III LT988_15275 PF02581 Thiamine monophosphate synthase LT988_15280 PF08543 Phosphomethylpyrimidine kinase LT988_15280 PF02581 Thiamine monophosphate synthase LT988_15285 PF00301 Rubredoxin LT988_15295 PF01521 Iron-sulphur cluster biosynthesis LT988_15300 PF01118 Semialdehyde dehydrogenase, NAD binding domain LT988_15300 PF02774 Semialdehyde dehydrogenase, dimerisation domain LT988_15310 PF01521 Iron-sulphur cluster biosynthesis LT988_15320 PF01479 S4 domain LT988_15320 PF00579 tRNA synthetases class I (W and Y) LT988_15350 PF01098 Cell cycle protein LT988_15355 PF00905 Penicillin binding protein transpeptidase domain LT988_15365 PF01040 UbiA prenyltransferase family LT988_15370 PF00378 Enoyl-CoA hydratase/isomerase LT988_15375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_15375 PF16582 Middle domain of thiamine pyrophosphate LT988_15375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LT988_15380 PF00425 chorismate binding enzyme LT988_15390 PF13460 NAD(P)H-binding LT988_15390 PF11066 Protein of unknown function (DUF2867) LT988_15405 PF00128 Alpha amylase, catalytic domain LT988_15405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LT988_15405 PF11941 Domain of unknown function (DUF3459) LT988_15410 PF13533 Biotin-lipoyl like LT988_15415 PF00005 ABC transporter LT988_15425 PF00005 ABC transporter LT988_15425 PF12848 ABC transporter LT988_15430 PF00313 'Cold-shock' DNA-binding domain LT988_15435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LT988_15445 PF08241 Methyltransferase domain LT988_15460 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus LT988_15460 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term LT988_15465 PF00561 alpha/beta hydrolase fold LT988_15470 PF17863 AAA lid domain LT988_15470 PF01078 Magnesium chelatase, subunit ChlI LT988_15475 PF17863 AAA lid domain LT988_15480 PF12697 Alpha/beta hydrolase family LT988_15485 PF01593 Flavin containing amine oxidoreductase LT988_15500 PF14535 AMP-binding enzyme C-terminal domain LT988_15500 PF00501 AMP-binding enzyme LT988_15510 PF00501 AMP-binding enzyme LT988_15510 PF14535 AMP-binding enzyme C-terminal domain LT988_15535 PF00809 Pterin binding enzyme LT988_15555 PF02424 ApbE family LT988_15560 PF00873 AcrB/AcrD/AcrF family LT988_15570 PF05491 RuvB C-terminal winged helix domain LT988_15570 PF05496 Holliday junction DNA helicase RuvB P-loop domain LT988_15570 PF17864 RuvB AAA lid domain LT988_15575 PF01565 FAD binding domain LT988_15575 PF02913 FAD linked oxidases, C-terminal domain LT988_15610 PF00795 Carbon-nitrogen hydrolase LT988_15615 PF03734 L,D-transpeptidase catalytic domain LT988_15615 PF17969 L,D-transpeptidase C-terminal domain LT988_15620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LT988_15620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LT988_15630 PF00230 Major intrinsic protein LT988_15640 PF00892 EamA-like transporter family LT988_15660 PF03009 Glycerophosphoryl diester phosphodiesterase family LT988_15705 PF16868 NMT1-like family LT988_15715 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LT988_15730 PF05872 Bacterial protein of unknown function (DUF853) LT988_15735 PF02931 Neurotransmitter-gated ion-channel ligand binding domain LT988_15740 PF13091 PLD-like domain LT988_15745 PF00462 Glutaredoxin LT988_15780 PF01850 PIN domain LT988_15820 PF04055 Radical SAM superfamily LT988_15820 PF18693 TRAM domain LT988_15820 PF00919 Uncharacterized protein family UPF0004 LT988_15845 PF00128 Alpha amylase, catalytic domain LT988_15850 PF00534 Glycosyl transferases group 1 LT988_15850 PF08323 Starch synthase catalytic domain LT988_15855 PF00232 Glycosyl hydrolase family 1 LT988_15860 PF06472 ABC transporter transmembrane region 2 LT988_15860 PF00005 ABC transporter LT988_15870 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LT988_15870 PF06165 Glycosyltransferase family 36 LT988_15870 PF10091 Putative glucoamylase LT988_15875 PF04349 Periplasmic glucan biosynthesis protein, MdoG LT988_15885 PF00535 Glycosyl transferase family 2 LT988_15900 PF00012 Hsp70 protein LT988_15940 PF01625 Peptide methionine sulfoxide reductase LT988_15950 PF01702 Queuine tRNA-ribosyltransferase LT988_15955 PF02699 Preprotein translocase subunit LT988_15960 PF07549 SecD/SecF GG Motif LT988_15960 PF13721 SecD export protein N-terminal TM region LT988_15960 PF02355 Protein export membrane protein LT988_15965 PF07549 SecD/SecF GG Motif LT988_15965 PF02355 Protein export membrane protein LT988_15985 PF13472 GDSL-like Lipase/Acylhydrolase family LT988_15990 PF00005 ABC transporter LT988_16030 PF13181 Tetratricopeptide repeat LT988_16030 PF01435 Peptidase family M48 LT988_16045 PF03279 Bacterial lipid A biosynthesis acyltransferase LT988_16055 PF07743 HSCB C-terminal oligomerisation domain LT988_16055 PF00226 DnaJ domain LT988_16060 PF02082 Transcriptional regulator LT988_16065 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_16070 PF00588 SpoU rRNA Methylase family LT988_16075 PF00459 Inositol monophosphatase family LT988_16090 PF00149 Calcineurin-like phosphoesterase LT988_16095 PF00232 Glycosyl hydrolase family 1 LT988_16100 PF00535 Glycosyl transferase family 2 LT988_16110 PF02469 Fasciclin domain LT988_16115 PF08447 PAS fold LT988_16115 PF00990 Diguanylate cyclase, GGDEF domain LT988_16115 PF00563 EAL domain LT988_16115 PF08448 PAS fold LT988_16120 PF03707 Bacterial signalling protein N terminal repeat LT988_16120 PF00990 Diguanylate cyclase, GGDEF domain LT988_16120 PF00563 EAL domain LT988_16130 PF07689 KaiB domain LT988_16135 PF06745 KaiC LT988_16150 PF00990 Diguanylate cyclase, GGDEF domain LT988_16155 PF00072 Response regulator receiver domain LT988_16155 PF00486 Transcriptional regulatory protein, C terminal LT988_16160 PF01584 CheW-like domain LT988_16160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_16160 PF01627 Hpt domain LT988_16160 PF00072 Response regulator receiver domain LT988_16165 PF03705 CheR methyltransferase, all-alpha domain LT988_16165 PF01739 CheR methyltransferase, SAM binding domain LT988_16170 PF01339 CheB methylesterase LT988_16170 PF00072 Response regulator receiver domain LT988_16175 PF12729 Four helix bundle sensory module for signal transduction LT988_16175 PF00672 HAMP domain LT988_16175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LT988_16180 PF02446 4-alpha-glucanotransferase LT988_16185 PF04358 DsrC like protein LT988_16190 PF00595 PDZ domain LT988_16190 PF13180 PDZ domain LT988_16195 PF00011 Hsp20/alpha crystallin family LT988_16210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LT988_16210 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LT988_16215 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LT988_16215 PF01568 Molydopterin dinucleotide binding domain LT988_16215 PF00384 Molybdopterin oxidoreductase LT988_16215 PF12838 4Fe-4S dicluster domain LT988_16215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LT988_16220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_16225 PF00374 Nickel-dependent hydrogenase LT988_16235 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LT988_16235 PF17854 FtsK alpha domain LT988_16235 PF09397 Ftsk gamma domain LT988_16235 PF01580 FtsK/SpoIIIE family LT988_16240 PF03548 Outer membrane lipoprotein carrier protein LolA LT988_16245 PF16193 AAA C-terminal domain LT988_16245 PF00004 ATPase family associated with various cellular activities (AAA) LT988_16245 PF12002 MgsA AAA+ ATPase C terminal LT988_16260 PF00730 HhH-GPD superfamily base excision DNA repair protein LT988_16260 PF10576 Iron-sulfur binding domain of endonuclease III LT988_16260 PF00633 Helix-hairpin-helix motif LT988_16265 PF01726 LexA DNA binding domain LT988_16265 PF00717 Peptidase S24-like LT988_16270 PF01476 LysM domain LT988_16275 PF00291 Pyridoxal-phosphate dependent enzyme LT988_16290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LT988_16290 PF01926 50S ribosome-binding GTPase LT988_16295 PF13360 PQQ-like domain LT988_16300 PF09976 Tetratricopeptide repeat-like domain LT988_16305 PF03129 Anticodon binding domain LT988_16305 PF13393 Histidyl-tRNA synthetase LT988_16320 PF04055 Radical SAM superfamily LT988_16325 PF00334 Nucleoside diphosphate kinase LT988_16345 PF02872 5'-nucleotidase, C-terminal domain LT988_16345 PF00149 Calcineurin-like phosphoesterase LT988_16350 PF03544 Gram-negative bacterial TonB protein C-terminal LT988_16360 PF02472 Biopolymer transport protein ExbD/TolR LT988_16365 PF01618 MotA/TolQ/ExbB proton channel family LT988_16380 PF07690 Major Facilitator Superfamily LT988_16390 PF01515 Phosphate acetyl/butaryl transferase LT988_16390 PF03949 Malic enzyme, NAD binding domain LT988_16390 PF00390 Malic enzyme, N-terminal domain LT988_16405 PF02630 SCO1/SenC LT988_16420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_16420 PF03466 LysR substrate binding domain LT988_16425 PF04358 DsrC like protein LT988_16450 PF04055 Radical SAM superfamily LT988_16450 PF02310 B12 binding domain LT988_16455 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LT988_16460 PF13244 Domain of unknown function (DUF4040) LT988_16460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LT988_16460 PF00361 Proton-conducting membrane transporter LT988_16470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_16470 PF00672 HAMP domain LT988_16470 PF01627 Hpt domain LT988_16470 PF00072 Response regulator receiver domain LT988_16470 PF00512 His Kinase A (phospho-acceptor) domain LT988_16470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_16475 PF10938 YfdX protein LT988_16485 PF00581 Rhodanese-like domain LT988_16495 PF02590 Predicted SPOUT methyltransferase LT988_16500 PF02545 Maf-like protein LT988_16505 PF10150 Ribonuclease E/G family LT988_16505 PF00575 S1 RNA binding domain LT988_16515 PF00795 Carbon-nitrogen hydrolase LT988_16520 PF01523 Putative modulator of DNA gyrase LT988_16525 PF01523 Putative modulator of DNA gyrase LT988_16555 PF03707 Bacterial signalling protein N terminal repeat LT988_16555 PF00990 Diguanylate cyclase, GGDEF domain LT988_16555 PF00563 EAL domain LT988_16560 PF07690 Major Facilitator Superfamily LT988_16570 PF00348 Polyprenyl synthetase LT988_16575 PF00829 Ribosomal prokaryotic L21 protein LT988_16580 PF01016 Ribosomal L27 protein LT988_16585 PF01926 50S ribosome-binding GTPase LT988_16585 PF01018 GTP1/OBG LT988_16590 PF00696 Amino acid kinase family LT988_16590 PF01472 PUA domain LT988_16595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LT988_16625 PF01121 Dephospho-CoA kinase LT988_16630 PF01478 Type IV leader peptidase family LT988_16630 PF06750 Bacterial Peptidase A24 N-terminal domain LT988_16635 PF00482 Type II secretion system (T2SS), protein F LT988_16640 PF00437 Type II/IV secretion system protein LT988_16640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LT988_16650 PF00501 AMP-binding enzyme LT988_16650 PF16177 Acetyl-coenzyme A synthetase N-terminus LT988_16650 PF13193 AMP-binding enzyme C-terminal domain LT988_16660 PF00571 CBS domain LT988_16665 PF00474 Sodium:solute symporter family LT988_16685 PF14821 Threonine synthase N terminus LT988_16685 PF00291 Pyridoxal-phosphate dependent enzyme LT988_16690 PF00682 HMGL-like LT988_16690 PF08502 LeuA allosteric (dimerisation) domain LT988_16715 PF00762 Ferrochelatase LT988_16725 PF07995 Glucose / Sorbosone dehydrogenase LT988_16730 PF00764 Arginosuccinate synthase LT988_16755 PF00535 Glycosyl transferase family 2 LT988_16770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LT988_16770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LT988_16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_16795 PF03466 LysR substrate binding domain LT988_16805 PF13419 Haloacid dehalogenase-like hydrolase LT988_16810 PF07726 ATPase family associated with various cellular activities (AAA) LT988_16810 PF17863 AAA lid domain LT988_16815 PF01882 Protein of unknown function DUF58 LT988_16830 PF07584 Aerotolerance regulator N-terminal LT988_16830 PF00092 von Willebrand factor type A domain LT988_16845 PF03466 LysR substrate binding domain LT988_16845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_16850 PF00872 Transposase, Mutator family LT988_16885 PF01985 CRS1 / YhbY (CRM) domain LT988_16890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LT988_16895 PF02224 Cytidylate kinase LT988_16900 PF00575 S1 RNA binding domain LT988_16905 PF00216 Bacterial DNA-binding protein LT988_16910 PF00155 Aminotransferase class I and II LT988_16915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_16915 PF00072 Response regulator receiver domain LT988_16915 PF00672 HAMP domain LT988_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_16915 PF00512 His Kinase A (phospho-acceptor) domain LT988_16915 PF01627 Hpt domain LT988_16920 PF00497 Bacterial extracellular solute-binding proteins, family 3 LT988_16920 PF01464 Transglycosylase SLT domain LT988_16925 PF11808 Phosphate regulon sensor protein PhoR LT988_16925 PF00989 PAS fold LT988_16925 PF00512 His Kinase A (phospho-acceptor) domain LT988_16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_16930 PF00072 Response regulator receiver domain LT988_16930 PF00486 Transcriptional regulatory protein, C terminal LT988_16935 PF00474 Sodium:solute symporter family LT988_16940 PF00293 NUDIX domain LT988_16950 PF00005 ABC transporter LT988_16950 PF12848 ABC transporter LT988_16955 PF01297 Zinc-uptake complex component A periplasmic LT988_16965 PF01258 Prokaryotic dksA/traR C4-type zinc finger LT988_16980 PF05981 CreA protein LT988_17010 PF00361 Proton-conducting membrane transporter LT988_17015 PF00146 NADH dehydrogenase LT988_17025 PF00361 Proton-conducting membrane transporter LT988_17030 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LT988_17035 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_17040 PF00005 ABC transporter LT988_17040 PF17755 UvrA DNA-binding domain LT988_17040 PF17760 UvrA interaction domain LT988_17045 PF00990 Diguanylate cyclase, GGDEF domain LT988_17045 PF00072 Response regulator receiver domain LT988_17065 PF00883 Cytosol aminopeptidase family, catalytic domain LT988_17065 PF02789 Cytosol aminopeptidase family, N-terminal domain LT988_17070 PF03739 Lipopolysaccharide export system permease LptF/LptG LT988_17080 PF00989 PAS fold LT988_17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_17080 PF00512 His Kinase A (phospho-acceptor) domain LT988_17085 PF00072 Response regulator receiver domain LT988_17085 PF00196 Bacterial regulatory proteins, luxR family LT988_17090 PF07836 DmpG-like communication domain LT988_17090 PF00682 HMGL-like LT988_17095 PF00285 Citrate synthase, C-terminal domain LT988_17105 PF00691 OmpA family LT988_17110 PF08328 Adenylosuccinate lyase C-terminal LT988_17110 PF00206 Lyase LT988_17115 PF00694 Aconitase C-terminal domain LT988_17115 PF00330 Aconitase family (aconitate hydratase) LT988_17120 PF04356 Protein of unknown function (DUF489) LT988_17130 PF00180 Isocitrate/isopropylmalate dehydrogenase LT988_17135 PF00313 'Cold-shock' DNA-binding domain LT988_17140 PF02617 ATP-dependent Clp protease adaptor protein ClpS LT988_17145 PF10431 C-terminal, D2-small domain, of ClpB protein LT988_17145 PF17871 AAA lid domain LT988_17145 PF02861 Clp amino terminal domain, pathogenicity island component LT988_17145 PF00004 ATPase family associated with various cellular activities (AAA) LT988_17145 PF07724 AAA domain (Cdc48 subfamily) LT988_17150 PF01176 Translation initiation factor 1A / IF-1 LT988_17155 PF04377 Arginine-tRNA-protein transferase, C terminus LT988_17155 PF04376 Arginine-tRNA-protein transferase, N terminus LT988_17160 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LT988_17170 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_17175 PF00999 Sodium/hydrogen exchanger family LT988_17180 PF00877 NlpC/P60 family LT988_17185 PF01355 High potential iron-sulfur protein LT988_17195 PF01728 FtsJ-like methyltransferase LT988_17200 PF17862 AAA+ lid domain LT988_17200 PF06480 FtsH Extracellular LT988_17200 PF01434 Peptidase family M41 LT988_17200 PF00004 ATPase family associated with various cellular activities (AAA) LT988_17205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LT988_17205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LT988_17205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LT988_17205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LT988_17210 PF00209 Sodium:neurotransmitter symporter family LT988_17215 PF03364 Polyketide cyclase / dehydrase and lipid transport LT988_17220 PF03658 RnfH family Ubiquitin LT988_17225 PF04355 SmpA / OmlA family LT988_17230 PF01475 Ferric uptake regulator family LT988_17235 PF02559 CarD-like/TRCF domain LT988_17235 PF00270 DEAD/DEAH box helicase LT988_17235 PF00271 Helicase conserved C-terminal domain LT988_17235 PF03461 TRCF domain LT988_17235 PF17757 UvrB interaction domain LT988_17240 PF13847 Methyltransferase domain LT988_17245 PF01965 DJ-1/PfpI family LT988_17245 PF12833 Helix-turn-helix domain LT988_17255 PF00486 Transcriptional regulatory protein, C terminal LT988_17255 PF18500 CadC C-terminal domain 1 LT988_17280 PF14659 Phage integrase, N-terminal SAM-like domain LT988_17280 PF00589 Phage integrase family LT988_17325 PF01695 IstB-like ATP binding protein LT988_17345 PF12256 Insecticide toxin TcdB middle/N-terminal region LT988_17345 PF12255 Insecticide toxin TcdB middle/C-terminal region LT988_17345 PF03534 Salmonella virulence plasmid 65kDa B protein LT988_17360 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain LT988_17360 PF18413 Neuraminidase-like domain LT988_17380 PF13005 zinc-finger binding domain of transposase IS66 LT988_17380 PF13007 Transposase C of IS166 homeodomain LT988_17380 PF03050 Transposase IS66 family LT988_17380 PF13817 IS66 C-terminal element LT988_17395 PF00067 Cytochrome P450 LT988_17400 PF11798 IMS family HHH motif LT988_17400 PF11799 impB/mucB/samB family C-terminal domain LT988_17400 PF00817 impB/mucB/samB family LT988_17425 PF08681 Protein of unknown function (DUF1778) LT988_17495 PF06122 Conjugative relaxosome accessory transposon protein LT988_17520 PF00270 DEAD/DEAH box helicase LT988_17520 PF08494 DEAD/H associated LT988_17520 PF00271 Helicase conserved C-terminal domain LT988_17530 PF07508 Recombinase LT988_17530 PF00239 Resolvase, N terminal domain LT988_17530 PF13408 Recombinase zinc beta ribbon domain LT988_17635 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_17695 PF02899 Phage integrase, N-terminal SAM-like domain LT988_17695 PF00589 Phage integrase family LT988_17715 PF01435 Peptidase family M48 LT988_17720 PF01292 Prokaryotic cytochrome b561 LT988_17725 PF04264 YceI-like domain LT988_17735 PF13344 Haloacid dehalogenase-like hydrolase LT988_17750 PF00255 Glutathione peroxidase LT988_17755 PF00970 Oxidoreductase FAD-binding domain LT988_17755 PF00175 Oxidoreductase NAD-binding domain LT988_17760 PF04679 ATP dependent DNA ligase C terminal region LT988_17760 PF01068 ATP dependent DNA ligase domain LT988_17760 PF04675 DNA ligase N terminus LT988_17765 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LT988_17770 PF01593 Flavin containing amine oxidoreductase LT988_17775 PF00034 Cytochrome c LT988_17790 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LT988_17795 PF00535 Glycosyl transferase family 2 LT988_17800 PF04751 Protein of unknown function (DUF615) LT988_17805 PF01368 DHH family LT988_17805 PF02272 DHHA1 domain LT988_17805 PF17768 RecJ OB domain LT988_17810 PF01435 Peptidase family M48 LT988_17815 PF04011 LemA family LT988_17820 PF01618 MotA/TolQ/ExbB proton channel family LT988_17825 PF02472 Biopolymer transport protein ExbD/TolR LT988_17830 PF00664 ABC transporter transmembrane region LT988_17830 PF00005 ABC transporter LT988_17835 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LT988_17840 PF02348 Cytidylyltransferase LT988_17860 PF08173 Membrane bound YbgT-like protein LT988_17865 PF02322 Cytochrome bd terminal oxidase subunit II LT988_17870 PF01654 Cytochrome bd terminal oxidase subunit I LT988_17885 PF00027 Cyclic nucleotide-binding domain LT988_17885 PF13545 Crp-like helix-turn-helix domain LT988_17890 PF12848 ABC transporter LT988_17890 PF00005 ABC transporter LT988_17890 PF16326 ABC transporter C-terminal domain LT988_17900 PF04204 Homoserine O-succinyltransferase LT988_17910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LT988_17910 PF00384 Molybdopterin oxidoreductase LT988_17910 PF01568 Molydopterin dinucleotide binding domain LT988_17915 PF13247 4Fe-4S dicluster domain LT988_17915 PF12800 4Fe-4S binding domain LT988_17920 PF04976 DMSO reductase anchor subunit (DmsC) LT988_17925 PF01544 CorA-like Mg2+ transporter protein LT988_17935 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LT988_17940 PF00027 Cyclic nucleotide-binding domain LT988_17940 PF13545 Crp-like helix-turn-helix domain LT988_17945 PF00305 Lipoxygenase LT988_17950 PF00211 Adenylate and Guanylate cyclase catalytic domain LT988_17950 PF00672 HAMP domain LT988_17955 PF00708 Acylphosphatase LT988_17955 PF17788 HypF Kae1-like domain LT988_17955 PF01300 Telomere recombination LT988_17955 PF07503 HypF finger LT988_17965 PF00842 Alanine racemase, C-terminal domain LT988_17965 PF01168 Alanine racemase, N-terminal domain LT988_17975 PF00072 Response regulator receiver domain LT988_17980 PF02743 Cache domain LT988_17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_17980 PF00512 His Kinase A (phospho-acceptor) domain LT988_17990 PF07689 KaiB domain LT988_17995 PF00563 EAL domain LT988_17995 PF00990 Diguanylate cyclase, GGDEF domain LT988_17995 PF03707 Bacterial signalling protein N terminal repeat LT988_18005 PF18339 RapA N-terminal Tudor like domain 1 LT988_18005 PF18337 RapA N-terminal Tudor like domain LT988_18005 PF12137 RNA polymerase recycling family C-terminal LT988_18005 PF00271 Helicase conserved C-terminal domain LT988_18005 PF00176 SNF2 family N-terminal domain LT988_18010 PF03843 Outer membrane lipoprotein Slp family LT988_18020 PF03966 Trm112p-like protein LT988_18035 PF00639 PPIC-type PPIASE domain LT988_18040 PF04319 NifZ domain LT988_18045 PF03206 Nitrogen fixation protein NifW LT988_18055 PF00682 HMGL-like LT988_18060 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LT988_18060 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LT988_18060 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LT988_18065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_18080 PF11490 DNA polymerase III polC-type N-terminus II LT988_18080 PF07733 Bacterial DNA polymerase III alpha NTPase domain LT988_18080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LT988_18080 PF14579 Helix-hairpin-helix motif LT988_18080 PF02811 PHP domain LT988_18080 PF00929 Exonuclease LT988_18080 PF01336 OB-fold nucleic acid binding domain LT988_18080 PF14480 DNA polymerase III polC-type N-terminus I LT988_18085 PF08463 EcoEI R protein C-terminal LT988_18085 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_18085 PF04851 Type III restriction enzyme, res subunit LT988_18085 PF00271 Helicase conserved C-terminal domain LT988_18095 PF05685 Putative restriction endonuclease LT988_18100 PF02384 N-6 DNA Methylase LT988_18160 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LT988_18160 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LT988_18185 PF13401 AAA domain LT988_18185 PF01471 Putative peptidoglycan binding domain LT988_18195 PF00571 CBS domain LT988_18195 PF01769 Divalent cation transporter LT988_18195 PF03448 MgtE intracellular N domain LT988_18220 PF00690 Cation transporter/ATPase, N-terminus LT988_18220 PF00689 Cation transporting ATPase, C-terminus LT988_18230 PF00355 Rieske [2Fe-2S] domain LT988_18235 PF02885 Glycosyl transferase family, helical bundle domain LT988_18235 PF00591 Glycosyl transferase family, a/b domain LT988_18250 PF01022 Bacterial regulatory protein, arsR family LT988_18255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LT988_18255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LT988_18270 PF01734 Patatin-like phospholipase LT988_18275 PF13533 Biotin-lipoyl like LT988_18280 PF00873 AcrB/AcrD/AcrF family LT988_18300 PF13091 PLD-like domain LT988_18300 PF13396 Phospholipase_D-nuclease N-terminal LT988_18315 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_18325 PF14403 Circularly permuted ATP-grasp type 2 LT988_18325 PF04168 A predicted alpha-helical domain with a conserved ER motif. LT988_18330 PF00990 Diguanylate cyclase, GGDEF domain LT988_18330 PF03707 Bacterial signalling protein N terminal repeat LT988_18330 PF00563 EAL domain LT988_18335 PF00501 AMP-binding enzyme LT988_18335 PF14535 AMP-binding enzyme C-terminal domain LT988_18350 PF13654 AAA domain LT988_18350 PF05362 Lon protease (S16) C-terminal proteolytic domain LT988_18360 PF01875 Memo-like protein LT988_18365 PF04055 Radical SAM superfamily LT988_18375 PF01571 Aminomethyltransferase folate-binding domain LT988_18375 PF08669 Glycine cleavage T-protein C-terminal barrel domain LT988_18375 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_18375 PF17806 Sarcosine oxidase A3 domain LT988_18435 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_18440 PF01348 Type II intron maturase LT988_18440 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_18465 PF00884 Sulfatase LT988_18475 PF16385 Domain of unknown function LT988_18475 PF00884 Sulfatase LT988_18485 PF00282 Pyridoxal-dependent decarboxylase conserved domain LT988_18500 PF10458 Valyl tRNA synthetase tRNA binding arm LT988_18500 PF08264 Anticodon-binding domain of tRNA LT988_18500 PF00133 tRNA synthetases class I (I, L, M and V) LT988_18510 PF00005 ABC transporter LT988_18510 PF09383 NIL domain LT988_18540 PF01131 DNA topoisomerase LT988_18540 PF01751 Toprim domain LT988_18545 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_18550 PF00148 Nitrogenase component 1 type Oxidoreductase LT988_18555 PF02579 Dinitrogenase iron-molybdenum cofactor LT988_18565 PF03270 Protein of unknown function, DUF269 LT988_18575 PF12838 4Fe-4S dicluster domain LT988_18605 PF00005 ABC transporter LT988_18605 PF00664 ABC transporter transmembrane region LT988_18610 PF00664 ABC transporter transmembrane region LT988_18610 PF00005 ABC transporter LT988_18615 PF05685 Putative restriction endonuclease LT988_18635 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LT988_18640 PF01850 PIN domain LT988_18705 PF02386 Cation transport protein LT988_18710 PF13439 Glycosyltransferase Family 4 LT988_18710 PF00534 Glycosyl transferases group 1 LT988_18715 PF01965 DJ-1/PfpI family LT988_18720 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LT988_18750 PF00005 ABC transporter LT988_18760 PF09347 Domain of unknown function (DUF1989) LT988_18765 PF02785 Biotin carboxylase C-terminal domain LT988_18765 PF00289 Biotin carboxylase, N-terminal domain LT988_18765 PF00364 Biotin-requiring enzyme LT988_18765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LT988_18770 PF01425 Amidase LT988_18775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LT988_18775 PF02896 PEP-utilising enzyme, TIM barrel domain LT988_18775 PF00391 PEP-utilising enzyme, mobile domain LT988_18795 PF00672 HAMP domain LT988_18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_18795 PF00512 His Kinase A (phospho-acceptor) domain LT988_18795 PF01627 Hpt domain LT988_18795 PF00072 Response regulator receiver domain LT988_18795 PF17149 Periplasmic sensor domain found in signal transduction proteins LT988_18805 PF18030 RimK PreATP-grasp domain LT988_18805 PF08443 RimK-like ATP-grasp domain LT988_18810 PF01252 Signal peptidase (SPase) II LT988_18815 PF08264 Anticodon-binding domain of tRNA LT988_18815 PF00133 tRNA synthetases class I (I, L, M and V) LT988_18815 PF06827 Zinc finger found in FPG and IleRS LT988_18820 PF01687 Riboflavin kinase LT988_18820 PF06574 FAD synthetase LT988_18825 PF03023 Lipid II flippase MurJ LT988_18830 PF01649 Ribosomal protein S20 LT988_18835 PF01790 Prolipoprotein diacylglyceryl transferase LT988_18860 PF01975 Survival protein SurE LT988_18870 PF01476 LysM domain LT988_18870 PF01551 Peptidase family M23 LT988_18875 PF00140 Sigma-70 factor, region 1.2 LT988_18875 PF04542 Sigma-70 region 2 LT988_18875 PF04539 Sigma-70 region 3 LT988_18875 PF04545 Sigma-70, region 4 LT988_18880 PF00115 Cytochrome C and Quinol oxidase polypeptide I LT988_18895 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LT988_18895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_18895 PF00034 Cytochrome c LT988_18905 PF13746 4Fe-4S dicluster domain LT988_18905 PF12801 4Fe-4S binding domain LT988_18905 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LT988_18920 PF00403 Heavy-metal-associated domain LT988_18935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LT988_18935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LT988_18935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LT988_18935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LT988_18940 PF00183 Hsp90 protein LT988_18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_18945 PF05191 Adenylate kinase, active site lid LT988_18950 PF00085 Thioredoxin LT988_18960 PF02082 Transcriptional regulator LT988_18965 PF05175 Methyltransferase small domain LT988_18970 PF04055 Radical SAM superfamily LT988_18970 PF06969 HemN C-terminal domain LT988_18975 PF00501 AMP-binding enzyme LT988_18975 PF13193 AMP-binding enzyme C-terminal domain LT988_18980 PF05697 Bacterial trigger factor protein (TF) LT988_18980 PF05698 Bacterial trigger factor protein (TF) C-terminus LT988_18980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LT988_18985 PF00574 Clp protease LT988_18990 PF07724 AAA domain (Cdc48 subfamily) LT988_18990 PF10431 C-terminal, D2-small domain, of ClpB protein LT988_18990 PF06689 ClpX C4-type zinc finger LT988_18995 PF00004 ATPase family associated with various cellular activities (AAA) LT988_18995 PF05362 Lon protease (S16) C-terminal proteolytic domain LT988_18995 PF02190 ATP-dependent protease La (LON) substrate-binding domain LT988_19000 PF00216 Bacterial DNA-binding protein LT988_19015 PF09312 SurA N-terminal domain LT988_19015 PF00639 PPIC-type PPIASE domain LT988_19030 PF00528 Binding-protein-dependent transport system inner membrane component LT988_19035 PF12911 N-terminal TM domain of oligopeptide transport permease C LT988_19035 PF00528 Binding-protein-dependent transport system inner membrane component LT988_19040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LT988_19040 PF00005 ABC transporter LT988_19050 PF00313 'Cold-shock' DNA-binding domain LT988_19055 PF12804 MobA-like NTP transferase domain LT988_19065 PF03734 L,D-transpeptidase catalytic domain LT988_19075 PF01464 Transglycosylase SLT domain LT988_19075 PF01476 LysM domain LT988_19085 PF00075 RNase H LT988_19090 PF00929 Exonuclease LT988_19095 PF13545 Crp-like helix-turn-helix domain LT988_19095 PF00027 Cyclic nucleotide-binding domain LT988_19105 PF06418 CTP synthase N-terminus LT988_19105 PF00117 Glutamine amidotransferase class-I LT988_19110 PF00793 DAHP synthetase I family LT988_19115 PF00113 Enolase, C-terminal TIM barrel domain LT988_19115 PF03952 Enolase, N-terminal domain LT988_19120 PF04977 Septum formation initiator LT988_19125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LT988_19130 PF02542 YgbB family LT988_19135 PF01142 tRNA pseudouridine synthase D (TruD) LT988_19140 PF13194 Domain of unknown function (DUF4010) LT988_19175 PF16123 Hydroxyacylglutathione hydrolase C-terminus LT988_19175 PF00753 Metallo-beta-lactamase superfamily LT988_19180 PF00795 Carbon-nitrogen hydrolase LT988_19190 PF01225 Mur ligase family, catalytic domain LT988_19190 PF02875 Mur ligase family, glutamate ligase domain LT988_19190 PF08245 Mur ligase middle domain LT988_19195 PF02441 Flavoprotein LT988_19205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LT988_19205 PF00364 Biotin-requiring enzyme LT988_19205 PF02817 e3 binding domain LT988_19210 PF16078 2-oxoglutarate dehydrogenase N-terminus LT988_19210 PF16870 2-oxoglutarate dehydrogenase C-terminal LT988_19210 PF00676 Dehydrogenase E1 component LT988_19210 PF02779 Transketolase, pyrimidine binding domain LT988_19225 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LT988_19225 PF03900 Porphobilinogen deaminase, C-terminal domain LT988_19230 PF02602 Uroporphyrinogen-III synthase HemD LT988_19235 PF01627 Hpt domain LT988_19235 PF00512 His Kinase A (phospho-acceptor) domain LT988_19235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_19235 PF00072 Response regulator receiver domain LT988_19235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LT988_19235 PF00672 HAMP domain LT988_19240 PF00990 Diguanylate cyclase, GGDEF domain LT988_19240 PF00072 Response regulator receiver domain LT988_19250 PF00593 TonB dependent receptor LT988_19250 PF07715 TonB-dependent Receptor Plug Domain LT988_19260 PF00970 Oxidoreductase FAD-binding domain LT988_19260 PF00175 Oxidoreductase NAD-binding domain LT988_19260 PF00111 2Fe-2S iron-sulfur cluster binding domain LT988_19280 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LT988_19285 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LT988_19290 PF01432 Peptidase family M3 LT988_19300 PF02463 RecF/RecN/SMC N terminal domain LT988_19300 PF06470 SMC proteins Flexible Hinge Domain LT988_19305 PF04354 ZipA, C-terminal FtsZ-binding domain LT988_19310 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LT988_19310 PF12826 Helix-hairpin-helix motif LT988_19310 PF01653 NAD-dependent DNA ligase adenylation domain LT988_19310 PF03120 NAD-dependent DNA ligase OB-fold domain LT988_19310 PF00533 BRCA1 C Terminus (BRCT) domain LT988_19320 PF00194 Eukaryotic-type carbonic anhydrase LT988_19335 PF03264 NapC/NirT cytochrome c family, N-terminal region LT988_19350 PF03795 YCII-related domain LT988_19355 PF04279 Intracellular septation protein A LT988_19360 PF01235 Sodium:alanine symporter family LT988_19365 PF01722 BolA-like protein LT988_19375 PF02080 TrkA-C domain LT988_19375 PF02254 TrkA-N domain LT988_19380 PF00072 Response regulator receiver domain LT988_19380 PF02954 Bacterial regulatory protein, Fis family LT988_19380 PF00158 Sigma-54 interaction domain LT988_19385 PF00672 HAMP domain LT988_19385 PF00989 PAS fold LT988_19385 PF00512 His Kinase A (phospho-acceptor) domain LT988_19385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_19395 PF01029 NusB family LT988_19395 PF01189 16S rRNA methyltransferase RsmB/F LT988_19400 PF00551 Formyl transferase LT988_19400 PF02911 Formyl transferase, C-terminal domain LT988_19405 PF01327 Polypeptide deformylase LT988_19415 PF17782 DprA winged helix domain LT988_19415 PF02481 DNA recombination-mediator protein A LT988_19420 PF04361 Protein of unknown function (DUF494) LT988_19425 PF01131 DNA topoisomerase LT988_19425 PF13368 Topoisomerase C-terminal repeat LT988_19425 PF01751 Toprim domain LT988_19430 PF04055 Radical SAM superfamily LT988_19430 PF06463 Molybdenum Cofactor Synthesis C LT988_19435 PF02600 Disulfide bond formation protein DsbB LT988_19445 PF03773 Predicted permease LT988_19460 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LT988_19460 PF00672 HAMP domain LT988_19460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_19460 PF07730 Histidine kinase LT988_19465 PF00196 Bacterial regulatory proteins, luxR family LT988_19465 PF00072 Response regulator receiver domain LT988_19470 PF01259 SAICAR synthetase LT988_19480 PF01042 Endoribonuclease L-PSP LT988_19485 PF13406 Transglycosylase SLT domain LT988_19490 PF01894 Uncharacterised protein family UPF0047 LT988_19495 PF17191 RecG wedge domain LT988_19495 PF00271 Helicase conserved C-terminal domain LT988_19495 PF00270 DEAD/DEAH box helicase LT988_19500 PF00654 Voltage gated chloride channel LT988_19515 PF04358 DsrC like protein LT988_19520 PF01370 NAD dependent epimerase/dehydratase family LT988_19525 PF16363 GDP-mannose 4,6 dehydratase LT988_19545 PF07508 Recombinase LT988_19545 PF00239 Resolvase, N terminal domain LT988_19545 PF13408 Recombinase zinc beta ribbon domain LT988_19570 PF01348 Type II intron maturase LT988_19570 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_19590 PF01370 NAD dependent epimerase/dehydratase family LT988_19630 PF00872 Transposase, Mutator family LT988_19640 PF01348 Type II intron maturase LT988_19640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_19700 PF13439 Glycosyltransferase Family 4 LT988_19700 PF00534 Glycosyl transferases group 1 LT988_19705 PF00132 Bacterial transferase hexapeptide (six repeats) LT988_19710 PF00534 Glycosyl transferases group 1 LT988_19710 PF13579 Glycosyl transferase 4-like domain LT988_19725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LT988_19750 PF01471 Putative peptidoglycan binding domain LT988_19750 PF13401 AAA domain LT988_19780 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LT988_19800 PF02719 Polysaccharide biosynthesis protein LT988_19805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LT988_19810 PF00483 Nucleotidyl transferase LT988_19815 PF02397 Bacterial sugar transferase LT988_19820 PF02719 Polysaccharide biosynthesis protein LT988_19890 PF02706 Chain length determinant protein LT988_19890 PF13807 G-rich domain on putative tyrosine kinase LT988_19890 PF13614 AAA domain LT988_19895 PF00684 DnaJ central domain LT988_19895 PF01556 DnaJ C terminal domain LT988_19895 PF00226 DnaJ domain LT988_19925 PF10996 Beta-Casp domain LT988_19925 PF00753 Metallo-beta-lactamase superfamily LT988_19925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LT988_19930 PF03477 ATP cone domain LT988_19930 PF02867 Ribonucleotide reductase, barrel domain LT988_19930 PF00317 Ribonucleotide reductase, all-alpha domain LT988_19935 PF00571 CBS domain LT988_19935 PF00478 IMP dehydrogenase / GMP reductase domain LT988_19940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LT988_19940 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LT988_19950 PF00873 AcrB/AcrD/AcrF family LT988_19960 PF13533 Biotin-lipoyl like LT988_19970 PF00664 ABC transporter transmembrane region LT988_19970 PF00005 ABC transporter LT988_19975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_19975 PF00672 HAMP domain LT988_19975 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LT988_19975 PF07730 Histidine kinase LT988_19980 PF00196 Bacterial regulatory proteins, luxR family LT988_19980 PF00072 Response regulator receiver domain LT988_19985 PF00581 Rhodanese-like domain LT988_19995 PF00149 Calcineurin-like phosphoesterase LT988_20000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LT988_20005 PF01406 tRNA synthetases class I (C) catalytic domain LT988_20005 PF09190 DALR domain LT988_20025 PF01557 Fumarylacetoacetate (FAA) hydrolase family LT988_20040 PF12169 DNA polymerase III subunits gamma and tau domain III LT988_20040 PF12170 DNA polymerase III tau subunit V interacting with alpha LT988_20040 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LT988_20045 PF02575 YbaB/EbfC DNA-binding family LT988_20050 PF13662 Toprim domain LT988_20050 PF02132 RecR protein LT988_20055 PF01230 HIT domain LT988_20060 PF03775 Septum formation inhibitor MinC, C-terminal domain LT988_20060 PF05209 Septum formation inhibitor MinC, N-terminal domain LT988_20065 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LT988_20070 PF03776 Septum formation topological specificity factor MinE LT988_20080 PF10672 S-adenosylmethionine-dependent methyltransferase LT988_20080 PF17785 PUA-like domain LT988_20085 PF03190 Protein of unknown function, DUF255 LT988_20090 PF13649 Methyltransferase domain LT988_20100 PF03061 Thioesterase superfamily LT988_20105 PF01618 MotA/TolQ/ExbB proton channel family LT988_20110 PF02472 Biopolymer transport protein ExbD/TolR LT988_20120 PF04052 TolB amino-terminal domain LT988_20120 PF07676 WD40-like Beta Propeller Repeat LT988_20125 PF00691 OmpA family LT988_20130 PF16331 TolA binding protein trimerisation LT988_20130 PF13525 Outer membrane lipoprotein LT988_20150 PF00480 ROK family LT988_20155 PF13460 NAD(P)H-binding LT988_20160 PF01980 tRNA-methyltransferase O LT988_20160 PF18389 TrmO C-terminal domain LT988_20180 PF13344 Haloacid dehalogenase-like hydrolase LT988_20205 PF09397 Ftsk gamma domain LT988_20205 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LT988_20205 PF17854 FtsK alpha domain LT988_20205 PF01580 FtsK/SpoIIIE family LT988_20220 PF02661 Fic/DOC family LT988_20220 PF13784 Fic/DOC family N-terminal LT988_20235 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LT988_20245 PF00873 AcrB/AcrD/AcrF family LT988_20250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_20260 PF00571 CBS domain LT988_20260 PF01769 Divalent cation transporter LT988_20260 PF03448 MgtE intracellular N domain LT988_20265 PF03781 Sulfatase-modifying factor enzyme 1 LT988_20270 PF01040 UbiA prenyltransferase family LT988_20280 PF00899 ThiF family LT988_20305 PF05175 Methyltransferase small domain LT988_20305 PF17827 PrmC N-terminal domain LT988_20310 PF00472 RF-1 domain LT988_20310 PF03462 PCRF domain LT988_20315 PF01488 Shikimate / quinate 5-dehydrogenase LT988_20315 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LT988_20315 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LT988_20325 PF00288 GHMP kinases N terminal domain LT988_20325 PF08544 GHMP kinases C terminal LT988_20335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LT988_20335 PF14572 Phosphoribosyl synthetase-associated domain LT988_20340 PF14693 Ribosomal protein TL5, C-terminal domain LT988_20340 PF01386 Ribosomal L25p family LT988_20345 PF01195 Peptidyl-tRNA hydrolase LT988_20355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LT988_20355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LT988_20355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LT988_20375 PF03143 Elongation factor Tu C-terminal domain LT988_20375 PF00009 Elongation factor Tu GTP binding domain LT988_20375 PF03144 Elongation factor Tu domain 2 LT988_20385 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LT988_20390 PF00467 KOW motif LT988_20390 PF02357 Transcription termination factor nusG LT988_20395 PF00298 Ribosomal protein L11, RNA binding domain LT988_20395 PF03946 Ribosomal protein L11, N-terminal domain LT988_20400 PF00687 Ribosomal protein L1p/L10e family LT988_20405 PF00466 Ribosomal protein L10 LT988_20410 PF00542 Ribosomal protein L7/L12 C-terminal domain LT988_20410 PF16320 Ribosomal protein L7/L12 dimerisation domain LT988_20415 PF04563 RNA polymerase beta subunit LT988_20415 PF04561 RNA polymerase Rpb2, domain 2 LT988_20415 PF04565 RNA polymerase Rpb2, domain 3 LT988_20415 PF10385 RNA polymerase beta subunit external 1 domain LT988_20415 PF04560 RNA polymerase Rpb2, domain 7 LT988_20415 PF00562 RNA polymerase Rpb2, domain 6 LT988_20420 PF00623 RNA polymerase Rpb1, domain 2 LT988_20420 PF04997 RNA polymerase Rpb1, domain 1 LT988_20420 PF05000 RNA polymerase Rpb1, domain 4 LT988_20420 PF04998 RNA polymerase Rpb1, domain 5 LT988_20420 PF04983 RNA polymerase Rpb1, domain 3 LT988_20425 PF00164 Ribosomal protein S12/S23 LT988_20430 PF00177 Ribosomal protein S7p/S5e LT988_20435 PF00679 Elongation factor G C-terminus LT988_20435 PF14492 Elongation Factor G, domain II LT988_20435 PF03764 Elongation factor G, domain IV LT988_20435 PF00009 Elongation factor Tu GTP binding domain LT988_20435 PF03144 Elongation factor Tu domain 2 LT988_20440 PF03144 Elongation factor Tu domain 2 LT988_20440 PF00009 Elongation factor Tu GTP binding domain LT988_20440 PF03143 Elongation factor Tu C-terminal domain LT988_20445 PF00338 Ribosomal protein S10p/S20e LT988_20450 PF00297 Ribosomal protein L3 LT988_20455 PF00573 Ribosomal protein L4/L1 family LT988_20460 PF00276 Ribosomal protein L23 LT988_20465 PF03947 Ribosomal Proteins L2, C-terminal domain LT988_20465 PF00181 Ribosomal Proteins L2, RNA binding domain LT988_20470 PF00203 Ribosomal protein S19 LT988_20475 PF00237 Ribosomal protein L22p/L17e LT988_20480 PF00189 Ribosomal protein S3, C-terminal domain LT988_20480 PF07650 KH domain LT988_20485 PF00252 Ribosomal protein L16p/L10e LT988_20490 PF00831 Ribosomal L29 protein LT988_20495 PF00366 Ribosomal protein S17 LT988_20500 PF00238 Ribosomal protein L14p/L23e LT988_20505 PF00467 KOW motif LT988_20505 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LT988_20510 PF00673 ribosomal L5P family C-terminus LT988_20510 PF00281 Ribosomal protein L5 LT988_20515 PF00253 Ribosomal protein S14p/S29e LT988_20520 PF00410 Ribosomal protein S8 LT988_20525 PF00347 Ribosomal protein L6 LT988_20530 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LT988_20535 PF00333 Ribosomal protein S5, N-terminal domain LT988_20535 PF03719 Ribosomal protein S5, C-terminal domain LT988_20540 PF00327 Ribosomal protein L30p/L7e LT988_20545 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LT988_20550 PF00344 SecY translocase LT988_20555 PF00444 Ribosomal protein L36 LT988_20560 PF00416 Ribosomal protein S13/S18 LT988_20565 PF00411 Ribosomal protein S11 LT988_20570 PF01479 S4 domain LT988_20570 PF00163 Ribosomal protein S4/S9 N-terminal domain LT988_20575 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LT988_20575 PF01000 RNA polymerase Rpb3/RpoA insert domain LT988_20575 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LT988_20580 PF01196 Ribosomal protein L17 LT988_20595 PF00271 Helicase conserved C-terminal domain LT988_20595 PF00270 DEAD/DEAH box helicase LT988_20600 PF00521 DNA gyrase/topoisomerase IV, subunit A LT988_20600 PF03989 DNA gyrase C-terminal domain, beta-propeller LT988_20605 PF00266 Aminotransferase class-V LT988_20610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LT988_20610 PF01842 ACT domain LT988_20610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LT988_20615 PF01842 ACT domain LT988_20615 PF01817 Chorismate mutase type II LT988_20615 PF00800 Prephenate dehydratase LT988_20620 PF00155 Aminotransferase class I and II LT988_20625 PF02153 Prephenate dehydrogenase LT988_20630 PF03707 Bacterial signalling protein N terminal repeat LT988_20630 PF00990 Diguanylate cyclase, GGDEF domain LT988_20630 PF00563 EAL domain LT988_20635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LT988_20640 PF14489 QueF-like protein LT988_20655 PF00072 Response regulator receiver domain LT988_20655 PF00196 Bacterial regulatory proteins, luxR family LT988_20720 PF13533 Biotin-lipoyl like LT988_20755 PF01850 PIN domain LT988_20770 PF12833 Helix-turn-helix domain LT988_20790 PF00300 Histidine phosphatase superfamily (branch 1) LT988_20800 PF00924 Mechanosensitive ion channel LT988_20810 PF00155 Aminotransferase class I and II LT988_20815 PF02080 TrkA-C domain LT988_20815 PF06826 Predicted Permease Membrane Region LT988_20825 PF00282 Pyridoxal-dependent decarboxylase conserved domain LT988_20830 PF00690 Cation transporter/ATPase, N-terminus LT988_20830 PF00689 Cation transporting ATPase, C-terminus LT988_20835 PF03976 Polyphosphate kinase 2 (PPK2) LT988_20850 PF00916 Sulfate permease family LT988_20850 PF01740 STAS domain LT988_20865 PF02405 Permease MlaE LT988_20870 PF00005 ABC transporter LT988_20885 PF00999 Sodium/hydrogen exchanger family LT988_20885 PF02254 TrkA-N domain LT988_20905 PF01979 Amidohydrolase family LT988_20910 PF07969 Amidohydrolase family LT988_20930 PF00005 ABC transporter LT988_20930 PF00027 Cyclic nucleotide-binding domain LT988_20960 PF00884 Sulfatase LT988_20970 PF11737 Protein of unknown function (DUF3300) LT988_20980 PF00999 Sodium/hydrogen exchanger family LT988_20995 PF00529 HlyD membrane-fusion protein of T1SS LT988_20995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_21000 PF00873 AcrB/AcrD/AcrF family LT988_21005 PF01726 LexA DNA binding domain LT988_21005 PF00717 Peptidase S24-like LT988_21010 PF00154 recA bacterial DNA recombination protein LT988_21015 PF00817 impB/mucB/samB family LT988_21015 PF11799 impB/mucB/samB family C-terminal domain LT988_21020 PF01336 OB-fold nucleic acid binding domain LT988_21020 PF02811 PHP domain LT988_21020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LT988_21020 PF14579 Helix-hairpin-helix motif LT988_21020 PF07733 Bacterial DNA polymerase III alpha NTPase domain LT988_21025 PF00873 AcrB/AcrD/AcrF family LT988_21030 PF00529 HlyD membrane-fusion protein of T1SS LT988_21030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_21135 PF11867 Domain of unknown function (DUF3387) LT988_21135 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_21135 PF18766 SWI2/SNF2 ATPase LT988_21150 PF01420 Type I restriction modification DNA specificity domain LT988_21160 PF00194 Eukaryotic-type carbonic anhydrase LT988_21165 PF03063 Prismane/CO dehydrogenase family LT988_21175 PF10119 Predicted methyltransferase regulatory domain LT988_21175 PF13847 Methyltransferase domain LT988_21180 PF00905 Penicillin binding protein transpeptidase domain LT988_21180 PF00912 Transglycosylase LT988_21180 PF06832 Penicillin-Binding Protein C-terminus Family LT988_21200 PF00795 Carbon-nitrogen hydrolase LT988_21220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LT988_21225 PF00005 ABC transporter LT988_21245 PF00155 Aminotransferase class I and II LT988_21250 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LT988_21250 PF07685 CobB/CobQ-like glutamine amidotransferase domain LT988_21260 PF09529 Integral membrane protein (intg_mem_TP0381) LT988_21290 PF01355 High potential iron-sulfur protein LT988_21295 PF02276 Photosynthetic reaction centre cytochrome C subunit LT988_21300 PF10672 S-adenosylmethionine-dependent methyltransferase LT988_21300 PF02926 THUMP domain LT988_21300 PF01170 Putative RNA methylase family UPF0020 LT988_21305 PF00270 DEAD/DEAH box helicase LT988_21305 PF04408 Helicase associated domain (HA2) LT988_21305 PF00271 Helicase conserved C-terminal domain LT988_21305 PF08482 ATP-dependent helicase C-terminal LT988_21325 PF12146 Serine aminopeptidase, S33 LT988_21330 PF01636 Phosphotransferase enzyme family LT988_21340 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LT988_21345 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LT988_21350 PF00330 Aconitase family (aconitate hydratase) LT988_21355 PF00694 Aconitase C-terminal domain LT988_21360 PF00180 Isocitrate/isopropylmalate dehydrogenase LT988_21365 PF01118 Semialdehyde dehydrogenase, NAD binding domain LT988_21365 PF02774 Semialdehyde dehydrogenase, dimerisation domain LT988_21375 PF01416 tRNA pseudouridine synthase LT988_21380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LT988_21385 PF00291 Pyridoxal-phosphate dependent enzyme LT988_21390 PF00290 Tryptophan synthase alpha chain LT988_21395 PF01039 Carboxyl transferase domain LT988_21395 PF17848 Acetyl-coA carboxylase zinc finger domain LT988_21400 PF08245 Mur ligase middle domain LT988_21400 PF02875 Mur ligase family, glutamate ligase domain LT988_21410 PF02674 Colicin V production protein LT988_21415 PF00156 Phosphoribosyl transferase domain LT988_21420 PF01053 Cys/Met metabolism PLP-dependent enzyme LT988_21470 PF01850 PIN domain LT988_21475 PF00497 Bacterial extracellular solute-binding proteins, family 3 LT988_21490 PF01850 PIN domain LT988_21535 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LT988_21535 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LT988_21550 PF01370 NAD dependent epimerase/dehydratase family LT988_21555 PF00912 Transglycosylase LT988_21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LT988_21560 PF03466 LysR substrate binding domain LT988_21565 PF02525 Flavodoxin-like fold LT988_21570 PF02678 Pirin LT988_21570 PF05726 Pirin C-terminal cupin domain LT988_21575 PF00465 Iron-containing alcohol dehydrogenase LT988_21580 PF00679 Elongation factor G C-terminus LT988_21580 PF00009 Elongation factor Tu GTP binding domain LT988_21580 PF06421 GTP-binding protein LepA C-terminus LT988_21585 PF10502 Signal peptidase, peptidase S26 LT988_21595 PF00035 Double-stranded RNA binding motif LT988_21595 PF14622 Ribonuclease-III-like LT988_21600 PF07650 KH domain LT988_21600 PF01926 50S ribosome-binding GTPase LT988_21605 PF02565 Recombination protein O C terminal LT988_21605 PF11967 Recombination protein O N terminal LT988_21610 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LT988_21615 PF00483 Nucleotidyl transferase LT988_21635 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LT988_21640 PF02641 Uncharacterized ACR, COG1993 LT988_21645 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LT988_21645 PF02403 Seryl-tRNA synthetase N-terminal domain LT988_21650 PF12794 Mechanosensitive ion channel inner membrane domain 1 LT988_21650 PF12795 Mechanosensitive ion channel porin domain LT988_21650 PF00924 Mechanosensitive ion channel LT988_21685 PF00211 Adenylate and Guanylate cyclase catalytic domain LT988_21695 PF00230 Major intrinsic protein LT988_21705 PF00814 Glycoprotease family LT988_21710 PF01266 FAD dependent oxidoreductase LT988_21715 PF02401 LytB protein LT988_21735 PF00916 Sulfate permease family LT988_21735 PF01740 STAS domain LT988_21760 PF02899 Phage integrase, N-terminal SAM-like domain LT988_21760 PF00589 Phage integrase family LT988_21770 PF13438 Domain of unknown function (DUF4113) LT988_21770 PF11799 impB/mucB/samB family C-terminal domain LT988_21770 PF00817 impB/mucB/samB family LT988_21775 PF00717 Peptidase S24-like LT988_21810 PF13089 Polyphosphate kinase N-terminal domain LT988_21810 PF13090 Polyphosphate kinase C-terminal domain 2 LT988_21810 PF02503 Polyphosphate kinase middle domain LT988_21810 PF17941 Polyphosphate kinase C-terminal domain 1 LT988_21815 PF08003 Protein of unknown function (DUF1698) LT988_21850 PF03949 Malic enzyme, NAD binding domain LT988_21850 PF00390 Malic enzyme, N-terminal domain LT988_21850 PF01515 Phosphate acetyl/butaryl transferase LT988_21870 PF00535 Glycosyl transferase family 2 LT988_21885 PF12704 MacB-like periplasmic core domain LT988_21885 PF02687 FtsX-like permease family LT988_21885 PF00005 ABC transporter LT988_21895 PF03781 Sulfatase-modifying factor enzyme 1 LT988_21915 PF01571 Aminomethyltransferase folate-binding domain LT988_21920 PF00773 RNB domain LT988_21925 PF05951 Bacterial protein of unknown function (DUF882) LT988_21930 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LT988_21930 PF01464 Transglycosylase SLT domain LT988_21940 PF14306 PUA-like domain LT988_21940 PF01747 ATP-sulfurylase LT988_21955 PF01053 Cys/Met metabolism PLP-dependent enzyme LT988_21960 PF01758 Sodium Bile acid symporter family LT988_21965 PF03050 Transposase IS66 family LT988_22000 PF00174 Oxidoreductase molybdopterin binding domain LT988_22005 PF01794 Ferric reductase like transmembrane component LT988_22010 PF08241 Methyltransferase domain LT988_22020 PF12161 HsdM N-terminal domain LT988_22020 PF02384 N-6 DNA Methylase LT988_22030 PF12161 HsdM N-terminal domain LT988_22030 PF02384 N-6 DNA Methylase LT988_22045 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA LT988_22085 PF00873 AcrB/AcrD/AcrF family LT988_22090 PF13533 Biotin-lipoyl like LT988_22125 PF08402 TOBE domain LT988_22125 PF00005 ABC transporter LT988_22130 PF00528 Binding-protein-dependent transport system inner membrane component LT988_22135 PF13416 Bacterial extracellular solute-binding protein LT988_22140 PF01458 Uncharacterized protein family (UPF0051) LT988_22145 PF00005 ABC transporter LT988_22150 PF01458 Uncharacterized protein family (UPF0051) LT988_22155 PF01883 Iron-sulfur cluster assembly protein LT988_22165 PF02673 Bacitracin resistance protein BacA LT988_22180 PF17674 HHH domain LT988_22180 PF00575 S1 RNA binding domain LT988_22180 PF09371 Tex-like protein N-terminal domain LT988_22180 PF16921 Tex protein YqgF-like domain LT988_22190 PF13533 Biotin-lipoyl like LT988_22195 PF00873 AcrB/AcrD/AcrF family LT988_22215 PF00403 Heavy-metal-associated domain LT988_22230 PF01899 Na+/H+ ion antiporter subunit LT988_22235 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LT988_22240 PF03334 Na+/H+ antiporter subunit LT988_22250 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LT988_22250 PF00361 Proton-conducting membrane transporter LT988_22250 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LT988_22250 PF13244 Domain of unknown function (DUF4040) LT988_22255 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LT988_22260 PF00361 Proton-conducting membrane transporter LT988_22265 PF00361 Proton-conducting membrane transporter LT988_22270 PF00146 NADH dehydrogenase LT988_22275 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LT988_22280 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LT988_22285 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LT988_22290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LT988_22290 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_22305 PF12704 MacB-like periplasmic core domain LT988_22305 PF02687 FtsX-like permease family LT988_22310 PF00005 ABC transporter LT988_22335 PF00175 Oxidoreductase NAD-binding domain LT988_22335 PF00970 Oxidoreductase FAD-binding domain LT988_22335 PF00111 2Fe-2S iron-sulfur cluster binding domain LT988_22355 PF02464 Competence-damaged protein LT988_22365 PF00154 recA bacterial DNA recombination protein LT988_22370 PF02631 RecX family LT988_22375 PF02272 DHHA1 domain LT988_22375 PF01411 tRNA synthetases class II (A) LT988_22375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LT988_22380 PF00696 Amino acid kinase family LT988_22380 PF01842 ACT domain LT988_22380 PF13840 ACT domain LT988_22385 PF02599 Global regulator protein family LT988_22400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LT988_22420 PF08534 Redoxin LT988_22435 PF04715 Anthranilate synthase component I, N terminal region LT988_22435 PF00425 chorismate binding enzyme LT988_22470 PF13506 Glycosyl transferase family 21 LT988_22480 PF08240 Alcohol dehydrogenase GroES-like domain LT988_22480 PF00107 Zinc-binding dehydrogenase LT988_22490 PF13439 Glycosyltransferase Family 4 LT988_22490 PF00534 Glycosyl transferases group 1 LT988_22500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LT988_22500 PF01872 RibD C-terminal domain LT988_22505 PF00149 Calcineurin-like phosphoesterase LT988_22515 PF01722 BolA-like protein LT988_22525 PF00107 Zinc-binding dehydrogenase LT988_22525 PF08240 Alcohol dehydrogenase GroES-like domain LT988_22530 PF05683 Fumarase C-terminus LT988_22530 PF05681 Fumarate hydratase (Fumerase) LT988_22540 PF03129 Anticodon binding domain LT988_22540 PF02824 TGS domain LT988_22540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LT988_22540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LT988_22545 PF00707 Translation initiation factor IF-3, C-terminal domain LT988_22545 PF05198 Translation initiation factor IF-3, N-terminal domain LT988_22550 PF01632 Ribosomal protein L35 LT988_22555 PF00453 Ribosomal protein L20 LT988_22560 PF01409 tRNA synthetases class II core domain (F) LT988_22560 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LT988_22565 PF03484 tRNA synthetase B5 domain LT988_22565 PF03147 Ferredoxin-fold anticodon binding domain LT988_22565 PF01588 Putative tRNA binding domain LT988_22565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LT988_22565 PF03483 B3/4 domain LT988_22570 PF00216 Bacterial DNA-binding protein LT988_22575 PF13411 MerR HTH family regulatory protein LT988_22595 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_22595 PF00271 Helicase conserved C-terminal domain LT988_22595 PF08463 EcoEI R protein C-terminal LT988_22595 PF04851 Type III restriction enzyme, res subunit LT988_22605 PF02384 N-6 DNA Methylase LT988_22605 PF12161 HsdM N-terminal domain LT988_22610 PF01420 Type I restriction modification DNA specificity domain LT988_22625 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LT988_22625 PF14490 Helix-hairpin-helix containing domain LT988_22625 PF13538 UvrD-like helicase C-terminal domain LT988_22630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LT988_22630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LT988_22635 PF01471 Putative peptidoglycan binding domain LT988_22635 PF10128 Glucose-6-phosphate dehydrogenase subunit LT988_22650 PF12146 Serine aminopeptidase, S33 LT988_22655 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LT988_22660 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LT988_22665 PF13520 Amino acid permease LT988_22680 PF00308 Bacterial dnaA protein LT988_22685 PF03358 NADPH-dependent FMN reductase LT988_22695 PF00708 Acylphosphatase LT988_22700 PF00149 Calcineurin-like phosphoesterase LT988_22705 PF02915 Rubrerythrin LT988_22720 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_22720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_22725 PF02817 e3 binding domain LT988_22725 PF00364 Biotin-requiring enzyme LT988_22725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LT988_22730 PF17831 Pyruvate dehydrogenase E1 component middle domain LT988_22730 PF00456 Transketolase, thiamine diphosphate binding domain LT988_22745 PF03186 CobD/Cbib protein LT988_22790 PF01895 PhoU domain LT988_22795 PF03976 Polyphosphate kinase 2 (PPK2) LT988_22805 PF05235 CHAD domain LT988_22805 PF01928 CYTH domain LT988_22810 PF03448 MgtE intracellular N domain LT988_22810 PF01769 Divalent cation transporter LT988_22810 PF00571 CBS domain LT988_22820 PF02872 5'-nucleotidase, C-terminal domain LT988_22820 PF00149 Calcineurin-like phosphoesterase LT988_22860 PF00224 Pyruvate kinase, barrel domain LT988_22860 PF00391 PEP-utilising enzyme, mobile domain LT988_22860 PF02887 Pyruvate kinase, alpha/beta domain LT988_22870 PF12849 PBP superfamily domain LT988_22875 PF00005 ABC transporter LT988_22880 PF00528 Binding-protein-dependent transport system inner membrane component LT988_22885 PF00528 Binding-protein-dependent transport system inner membrane component LT988_22890 PF12849 PBP superfamily domain LT988_22900 PF00245 Alkaline phosphatase LT988_22915 PF07977 FabA-like domain LT988_22920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LT988_22920 PF03129 Anticodon binding domain LT988_22920 PF04073 Aminoacyl-tRNA editing domain LT988_22930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_22930 PF00205 Thiamine pyrophosphate enzyme, central domain LT988_22930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LT988_22935 PF10369 Small subunit of acetolactate synthase LT988_22940 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LT988_22940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LT988_22945 PF02597 ThiS family LT988_22950 PF00994 Probable molybdopterin binding domain LT988_22950 PF03454 MoeA C-terminal region (domain IV) LT988_22950 PF03453 MoeA N-terminal region (domain I and II) LT988_22955 PF00994 Probable molybdopterin binding domain LT988_22965 PF00478 IMP dehydrogenase / GMP reductase domain LT988_22965 PF00571 CBS domain LT988_22990 PF02151 UvrB/uvrC motif LT988_22990 PF01541 GIY-YIG catalytic domain LT988_22990 PF08459 UvrC Helix-hairpin-helix N-terminal LT988_22995 PF01066 CDP-alcohol phosphatidyltransferase LT988_23015 PF00390 Malic enzyme, N-terminal domain LT988_23015 PF03949 Malic enzyme, NAD binding domain LT988_23020 PF00206 Lyase LT988_23020 PF10415 Fumarase C C-terminus LT988_23035 PF00498 FHA domain LT988_23035 PF01061 ABC-2 type transporter LT988_23035 PF00005 ABC transporter LT988_23060 PF03781 Sulfatase-modifying factor enzyme 1 LT988_23075 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LT988_23080 PF13677 Membrane MotB of proton-channel complex MotA/MotB LT988_23080 PF00691 OmpA family LT988_23085 PF06761 Intracellular multiplication and human macrophage-killing LT988_23085 PF06744 Type VI secretion protein IcmF C-terminal LT988_23085 PF14331 ImcF-related N-terminal domain LT988_23105 PF04717 Type VI secretion system, phage-baseplate injector LT988_23105 PF06715 Gp5 C-terminal repeat (3 copies) LT988_23130 PF15635 GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 LT988_23130 PF13665 Domain of unknown function (DUF4150) LT988_23150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_23175 PF10431 C-terminal, D2-small domain, of ClpB protein LT988_23175 PF17871 AAA lid domain LT988_23175 PF07724 AAA domain (Cdc48 subfamily) LT988_23175 PF00004 ATPase family associated with various cellular activities (AAA) LT988_23185 PF05947 Type VI secretion system, TssF LT988_23190 PF04965 Gene 25-like lysozyme LT988_23195 PF07024 ImpE protein LT988_23200 PF05638 Type VI secretion system effector, Hcp LT988_23205 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LT988_23210 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LT988_23215 PF06812 ImpA, N-terminal, type VI secretion system LT988_23255 PF00528 Binding-protein-dependent transport system inner membrane component LT988_23260 PF00005 ABC transporter LT988_23260 PF00571 CBS domain LT988_23265 PF01568 Molydopterin dinucleotide binding domain LT988_23265 PF00384 Molybdopterin oxidoreductase LT988_23275 PF00561 alpha/beta hydrolase fold LT988_23280 PF02321 Outer membrane efflux protein LT988_23285 PF01264 Chorismate synthase LT988_23290 PF12832 MFS_1 like family LT988_23295 PF00128 Alpha amylase, catalytic domain LT988_23295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LT988_23325 PF00749 tRNA synthetases class I (E and Q), catalytic domain LT988_23325 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LT988_23340 PF00107 Zinc-binding dehydrogenase LT988_23340 PF08240 Alcohol dehydrogenase GroES-like domain LT988_23345 PF00756 Putative esterase LT988_23365 PF03458 UPF0126 domain LT988_23370 PF00920 Dehydratase family LT988_23385 PF05567 Neisseria PilC beta-propeller domain LT988_23420 PF00873 AcrB/AcrD/AcrF family LT988_23430 PF17092 Penicillin-binding protein OB-like domain LT988_23430 PF00912 Transglycosylase LT988_23430 PF00905 Penicillin binding protein transpeptidase domain LT988_23460 PF00155 Aminotransferase class I and II LT988_23465 PF01842 ACT domain LT988_23465 PF00742 Homoserine dehydrogenase LT988_23465 PF03447 Homoserine dehydrogenase, NAD binding domain LT988_23490 PF00005 ABC transporter LT988_23500 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LT988_23500 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LT988_23505 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LT988_23505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LT988_23510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LT988_23510 PF00128 Alpha amylase, catalytic domain LT988_23525 PF01926 50S ribosome-binding GTPase LT988_23525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LT988_23530 PF00202 Aminotransferase class-III LT988_23530 PF06968 Biotin and Thiamin Synthesis associated domain LT988_23530 PF04055 Radical SAM superfamily LT988_23545 PF03193 RsgA GTPase LT988_23555 PF00929 Exonuclease LT988_23560 PF08331 Domain of unknown function (DUF1730) LT988_23565 PF01256 Carbohydrate kinase LT988_23565 PF03853 YjeF-related protein N-terminus LT988_23570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LT988_23575 PF01520 N-acetylmuramoyl-L-alanine amidase LT988_23575 PF11741 AMIN domain LT988_23580 PF01119 DNA mismatch repair protein, C-terminal domain LT988_23580 PF08676 MutL C terminal dimerisation domain LT988_23590 PF17209 Hfq protein LT988_23595 PF16360 GTP-binding GTPase Middle Region LT988_23595 PF13167 GTP-binding GTPase N-terminal LT988_23595 PF01926 50S ribosome-binding GTPase LT988_23600 PF01145 SPFH domain / Band 7 family LT988_23600 PF12221 Bacterial membrane protein N terminal LT988_23605 PF01145 SPFH domain / Band 7 family LT988_23615 PF13393 Histidyl-tRNA synthetase LT988_23620 PF00709 Adenylosuccinate synthetase LT988_23630 PF00364 Biotin-requiring enzyme LT988_23630 PF00682 HMGL-like LT988_23630 PF02436 Conserved carboxylase domain LT988_23635 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LT988_23640 PF02620 Large ribosomal RNA subunit accumulation protein YceD LT988_23645 PF01783 Ribosomal L32p protein family LT988_23650 PF02504 Fatty acid synthesis protein LT988_23655 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LT988_23655 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LT988_23660 PF00698 Acyl transferase domain LT988_23670 PF00550 Phosphopantetheine attachment site LT988_23675 PF00109 Beta-ketoacyl synthase, N-terminal domain LT988_23675 PF02801 Beta-ketoacyl synthase, C-terminal domain LT988_23680 PF01063 Amino-transferase class IV LT988_23685 PF02618 YceG-like family LT988_23690 PF02223 Thymidylate kinase LT988_23695 PF09115 DNA polymerase III, delta subunit, C terminal LT988_23705 PF01026 TatD related DNase LT988_23710 PF03976 Polyphosphate kinase 2 (PPK2) LT988_23720 PF01145 SPFH domain / Band 7 family LT988_23725 PF02397 Bacterial sugar transferase LT988_23740 PF00291 Pyridoxal-phosphate dependent enzyme LT988_23750 PF00672 HAMP domain LT988_23750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_23750 PF00512 His Kinase A (phospho-acceptor) domain LT988_23755 PF00158 Sigma-54 interaction domain LT988_23755 PF00072 Response regulator receiver domain LT988_23755 PF02954 Bacterial regulatory protein, Fis family LT988_23760 PF00801 PKD domain LT988_23760 PF05547 Immune inhibitor A peptidase M6 LT988_23765 PF13614 AAA domain LT988_23820 PF13439 Glycosyltransferase Family 4 LT988_23820 PF00534 Glycosyl transferases group 1 LT988_23825 PF02350 UDP-N-acetylglucosamine 2-epimerase LT988_23840 PF01610 Transposase LT988_23840 PF13542 Helix-turn-helix domain of transposase family ISL3 LT988_23840 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LT988_23865 PF01609 Transposase DDE domain LT988_23865 PF13808 DDE_Tnp_1-associated LT988_23890 PF00535 Glycosyl transferase family 2 LT988_23915 PF00953 Glycosyl transferase family 4 LT988_23925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LT988_23925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LT988_23925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LT988_23965 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LT988_23975 PF01938 TRAM domain LT988_23975 PF05958 tRNA (Uracil-5-)-methyltransferase LT988_23980 PF01928 CYTH domain LT988_23995 PF01479 S4 domain LT988_24000 PF00462 Glutaredoxin LT988_24005 PF01433 Peptidase family M1 domain LT988_24005 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LT988_24005 PF11940 Domain of unknown function (DUF3458) Ig-like fold LT988_24020 PF00528 Binding-protein-dependent transport system inner membrane component LT988_24025 PF00528 Binding-protein-dependent transport system inner membrane component LT988_24030 PF00005 ABC transporter LT988_24030 PF08402 TOBE domain LT988_24035 PF13416 Bacterial extracellular solute-binding protein LT988_24045 PF02607 B12 binding domain LT988_24045 PF13411 MerR HTH family regulatory protein LT988_24050 PF00977 Histidine biosynthesis protein LT988_24060 PF04060 Putative Fe-S cluster LT988_24060 PF13187 4Fe-4S dicluster domain LT988_24065 PF10371 Domain of unknown function LT988_24065 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LT988_24065 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LT988_24065 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LT988_24065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_24070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LT988_24070 PF13237 4Fe-4S dicluster domain LT988_24070 PF13375 RnfC Barrel sandwich hybrid domain LT988_24070 PF10531 SLBB domain LT988_24075 PF03116 NQR2, RnfD, RnfE family LT988_24085 PF02508 Rnf-Nqr subunit, membrane protein LT988_24090 PF02508 Rnf-Nqr subunit, membrane protein LT988_24100 PF00175 Oxidoreductase NAD-binding domain LT988_24115 PF00211 Adenylate and Guanylate cyclase catalytic domain LT988_24135 PF05114 Protein of unknown function (DUF692) LT988_24145 PF04542 Sigma-70 region 2 LT988_24145 PF04545 Sigma-70, region 4 LT988_24150 PF06532 Negative regulator of sigma F LT988_24165 PF00009 Elongation factor Tu GTP binding domain LT988_24165 PF16658 Class II release factor RF3, C-terminal domain LT988_24170 PF00583 Acetyltransferase (GNAT) family LT988_24175 PF01384 Phosphate transporter family LT988_24180 PF10371 Domain of unknown function LT988_24180 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LT988_24180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LT988_24180 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LT988_24180 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LT988_24185 PF01180 Dihydroorotate dehydrogenase LT988_24210 PF03480 Bacterial extracellular solute-binding protein, family 7 LT988_24220 PF00266 Aminotransferase class-V LT988_24225 PF00474 Sodium:solute symporter family LT988_24230 PF04341 Protein of unknown function, DUF485 LT988_24265 PF02899 Phage integrase, N-terminal SAM-like domain LT988_24265 PF00589 Phage integrase family LT988_24315 PF10502 Signal peptidase, peptidase S26 LT988_24325 PF06834 TraU protein LT988_24330 PF06986 Type-1V conjugative transfer system mating pair stabilisation LT988_24385 PF00484 Carbonic anhydrase LT988_24410 PF12556 Cobaltochelatase CobS subunit N terminal LT988_24410 PF07728 AAA domain (dynein-related subfamily) LT988_24410 PF08406 CbbQ/NirQ/NorQ C-terminal LT988_24435 PF04002 RadC-like JAB domain LT988_24495 PF00089 Trypsin LT988_24525 PF01223 DNA/RNA non-specific endonuclease LT988_24560 PF00082 Subtilase family LT988_24565 PF00082 Subtilase family LT988_24570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LT988_24570 PF00183 Hsp90 protein LT988_24575 PF00176 SNF2 family N-terminal domain LT988_24575 PF04434 SWIM zinc finger LT988_24575 PF00271 Helicase conserved C-terminal domain LT988_24590 PF09335 SNARE associated Golgi protein LT988_24610 PF06122 Conjugative relaxosome accessory transposon protein LT988_24675 PF08681 Protein of unknown function (DUF1778) LT988_24705 PF05552 Conserved TM helix LT988_24705 PF00924 Mechanosensitive ion channel LT988_24710 PF09364 XFP N-terminal domain LT988_24710 PF09363 XFP C-terminal domain LT988_24710 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase LT988_24755 PF03006 Haemolysin-III related LT988_24770 PF10091 Putative glucoamylase LT988_24770 PF06165 Glycosyltransferase family 36 LT988_24770 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LT988_24815 PF13401 AAA domain LT988_24815 PF01471 Putative peptidoglycan binding domain LT988_24830 PF00483 Nucleotidyl transferase LT988_24835 PF04972 BON domain LT988_24850 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LT988_24870 PF00239 Resolvase, N terminal domain LT988_24870 PF07508 Recombinase LT988_24870 PF13408 Recombinase zinc beta ribbon domain LT988_24910 PF00107 Zinc-binding dehydrogenase LT988_24910 PF16884 N-terminal domain of oxidoreductase LT988_24940 PF10011 Predicted membrane protein (DUF2254) LT988_24945 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_24945 PF00306 ATP synthase alpha/beta chain, C terminal domain LT988_24945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_24955 PF11154 Protein of unknown function (DUF2934) LT988_24955 PF00430 ATP synthase B/B' CF(0) LT988_24960 PF00137 ATP synthase subunit C LT988_24965 PF00119 ATP synthase A chain LT988_24985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LT988_24985 PF02874 ATP synthase alpha/beta family, beta-barrel domain LT988_25010 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_25010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_25020 PF08803 Putative mono-oxygenase ydhR LT988_25045 PF13460 NAD(P)H-binding LT988_25050 PF00565 Staphylococcal nuclease homologue LT988_25065 PF00274 Fructose-bisphosphate aldolase class-I LT988_25085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_25085 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_25100 PF00403 Heavy-metal-associated domain LT988_25100 PF07992 Pyridine nucleotide-disulphide oxidoreductase LT988_25100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LT988_25110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LT988_25110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LT988_25110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LT988_25110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LT988_25130 PF11867 Domain of unknown function (DUF3387) LT988_25130 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LT988_25130 PF18766 SWI2/SNF2 ATPase LT988_25160 PF17761 DUF1016 N-terminal domain LT988_25160 PF06250 YhcG PDDEXK nuclease domain LT988_25175 PF02779 Transketolase, pyrimidine binding domain LT988_25175 PF02780 Transketolase, C-terminal domain LT988_25175 PF00456 Transketolase, thiamine diphosphate binding domain LT988_25180 PF00342 Phosphoglucose isomerase