locus-tag class description Thivi_0001 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thivi_0001 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_0003 PF00155 Aminotransferase class I and II Thivi_0004 PF01842 ACT domain Thivi_0004 PF03447 Homoserine dehydrogenase, NAD binding domain Thivi_0004 PF00742 Homoserine dehydrogenase Thivi_0007 PF16921 Tex protein YqgF-like domain Thivi_0007 PF09371 Tex-like protein N-terminal domain Thivi_0007 PF00575 S1 RNA binding domain Thivi_0007 PF17674 HHH domain Thivi_0013 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thivi_0014 PF01783 Ribosomal L32p protein family Thivi_0015 PF02504 Fatty acid synthesis protein Thivi_0016 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thivi_0016 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thivi_0017 PF00698 Acyl transferase domain Thivi_0019 PF00550 Phosphopantetheine attachment site Thivi_0020 PF00109 Beta-ketoacyl synthase, N-terminal domain Thivi_0020 PF02801 Beta-ketoacyl synthase, C-terminal domain Thivi_0021 PF01063 Amino-transferase class IV Thivi_0022 PF02618 YceG-like family Thivi_0023 PF02223 Thymidylate kinase Thivi_0024 PF09115 DNA polymerase III, delta subunit, C terminal Thivi_0026 PF01026 TatD related DNase Thivi_0027 PF04403 Paraquat-inducible protein A Thivi_0028 PF02470 MlaD protein Thivi_0032 PF00486 Transcriptional regulatory protein, C terminal Thivi_0032 PF00072 Response regulator receiver domain Thivi_0033 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0033 PF00672 HAMP domain Thivi_0033 PF16527 Two-component sensor protein CpxA, periplasmic domain Thivi_0036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0036 PF00672 HAMP domain Thivi_0038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0038 PF00072 Response regulator receiver domain Thivi_0038 PF01627 Hpt domain Thivi_0038 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0038 PF00672 HAMP domain Thivi_0039 PF03707 Bacterial signalling protein N terminal repeat Thivi_0039 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0039 PF00563 EAL domain Thivi_0041 PF00873 AcrB/AcrD/AcrF family Thivi_0042 PF13533 Biotin-lipoyl like Thivi_0045 PF08245 Mur ligase middle domain Thivi_0045 PF02875 Mur ligase family, glutamate ligase domain Thivi_0045 PF08443 RimK-like ATP-grasp domain Thivi_0046 PF00664 ABC transporter transmembrane region Thivi_0046 PF00005 ABC transporter Thivi_0047 PF09587 Bacterial capsule synthesis protein PGA_cap Thivi_0050 PF00289 Biotin carboxylase, N-terminal domain Thivi_0050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thivi_0050 PF02785 Biotin carboxylase C-terminal domain Thivi_0052 PF00682 HMGL-like Thivi_0052 PF00364 Biotin-requiring enzyme Thivi_0052 PF02436 Conserved carboxylase domain Thivi_0053 PF01595 Cyclin M transmembrane N-terminal domain Thivi_0053 PF03471 Transporter associated domain Thivi_0053 PF00571 CBS domain Thivi_0056 PF02386 Cation transport protein Thivi_0057 PF02254 TrkA-N domain Thivi_0057 PF02080 TrkA-C domain Thivi_0058 PF02424 ApbE family Thivi_0059 PF02416 mttA/Hcf106 family Thivi_0061 PF01925 Sulfite exporter TauE/SafE Thivi_0064 PF00072 Response regulator receiver domain Thivi_0064 PF01627 Hpt domain Thivi_0064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0064 PF00672 HAMP domain Thivi_0064 PF17149 Periplasmic sensor domain found in signal transduction proteins Thivi_0064 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0065 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0065 PF08448 PAS fold Thivi_0067 PF03658 RnfH family Ubiquitin Thivi_0068 PF02508 Rnf-Nqr subunit, membrane protein Thivi_0069 PF04205 FMN-binding domain Thivi_0070 PF03116 NQR2, RnfD, RnfE family Thivi_0071 PF13375 RnfC Barrel sandwich hybrid domain Thivi_0071 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thivi_0071 PF10531 SLBB domain Thivi_0071 PF13237 4Fe-4S dicluster domain Thivi_0072 PF04060 Putative Fe-S cluster Thivi_0073 PF02508 Rnf-Nqr subunit, membrane protein Thivi_0076 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0076 PF13492 GAF domain Thivi_0076 PF02702 Osmosensitive K+ channel His kinase sensor domain Thivi_0076 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0076 PF13493 Domain of unknown function (DUF4118) Thivi_0081 PF02669 K+-transporting ATPase, c chain Thivi_0083 PF03814 Potassium-transporting ATPase A subunit Thivi_0085 PF00582 Universal stress protein family Thivi_0087 PF02416 mttA/Hcf106 family Thivi_0088 PF02416 mttA/Hcf106 family Thivi_0089 PF01699 Sodium/calcium exchanger protein Thivi_0090 PF01322 Cytochrome C' Thivi_0092 PF06508 Queuosine biosynthesis protein QueC Thivi_0093 PF01242 6-pyruvoyl tetrahydropterin synthase Thivi_0096 PF12627 Probable RNA and SrmB- binding site of polymerase A Thivi_0096 PF12626 Polymerase A arginine-rich C-terminus Thivi_0096 PF01743 Poly A polymerase head domain Thivi_0098 PF02548 Ketopantoate hydroxymethyltransferase Thivi_0099 PF02569 Pantoate-beta-alanine ligase Thivi_0100 PF02261 Aspartate decarboxylase Thivi_0102 PF08323 Starch synthase catalytic domain Thivi_0102 PF00534 Glycosyl transferases group 1 Thivi_0103 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thivi_0103 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thivi_0105 PF00342 Phosphoglucose isomerase Thivi_0106 PF12419 SNF2 Helicase protein Thivi_0106 PF00271 Helicase conserved C-terminal domain Thivi_0106 PF00176 SNF2 family N-terminal domain Thivi_0115 PF06228 Haem utilisation ChuX/HutX Thivi_0117 PF01475 Ferric uptake regulator family Thivi_0125 PF00005 ABC transporter Thivi_0128 PF00534 Glycosyl transferases group 1 Thivi_0128 PF13439 Glycosyltransferase Family 4 Thivi_0131 PF00535 Glycosyl transferase family 2 Thivi_0135 PF00534 Glycosyl transferases group 1 Thivi_0135 PF13439 Glycosyltransferase Family 4 Thivi_0136 PF00534 Glycosyl transferases group 1 Thivi_0136 PF13439 Glycosyltransferase Family 4 Thivi_0137 PF00535 Glycosyl transferase family 2 Thivi_0148 PF13808 DDE_Tnp_1-associated Thivi_0148 PF01609 Transposase DDE domain Thivi_0153 PF07726 ATPase family associated with various cellular activities (AAA) Thivi_0153 PF17863 AAA lid domain Thivi_0155 PF01841 Transglutaminase-like superfamily Thivi_0155 PF13559 Domain of unknown function (DUF4129) Thivi_0155 PF11992 Domain of unknown function (DUF3488) Thivi_0156 PF03239 Iron permease FTR1 family Thivi_0162 PF04264 YceI-like domain Thivi_0163 PF01292 Prokaryotic cytochrome b561 Thivi_0166 PF01551 Peptidase family M23 Thivi_0166 PF10145 Phage-related minor tail protein Thivi_0166 PF01464 Transglycosylase SLT domain Thivi_0168 PF08378 Nuclease-related domain Thivi_0174 PF01381 Helix-turn-helix Thivi_0181 PF00263 Bacterial type II and III secretion system protein Thivi_0181 PF03958 Bacterial type II/III secretion system short domain Thivi_0183 PF00482 Type II secretion system (T2SS), protein F Thivi_0184 PF00437 Type II/IV secretion system protein Thivi_0185 PF00437 Type II/IV secretion system protein Thivi_0196 PF00239 Resolvase, N terminal domain Thivi_0196 PF02796 Helix-turn-helix domain of resolvase Thivi_0201 PF03707 Bacterial signalling protein N terminal repeat Thivi_0201 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0201 PF00563 EAL domain Thivi_0209 PF13419 Haloacid dehalogenase-like hydrolase Thivi_0210 PF17863 AAA lid domain Thivi_0210 PF07726 ATPase family associated with various cellular activities (AAA) Thivi_0212 PF01882 Protein of unknown function DUF58 Thivi_0214 PF00107 Zinc-binding dehydrogenase Thivi_0214 PF08240 Alcohol dehydrogenase GroES-like domain Thivi_0215 PF01126 Heme oxygenase Thivi_0216 PF04542 Sigma-70 region 2 Thivi_0216 PF04545 Sigma-70, region 4 Thivi_0218 PF03150 Di-haem cytochrome c peroxidase Thivi_0218 PF00034 Cytochrome c Thivi_0219 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thivi_0219 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_0221 PF04055 Radical SAM superfamily Thivi_0222 PF01132 Elongation factor P (EF-P) OB domain Thivi_0222 PF08207 Elongation factor P (EF-P) KOW-like domain Thivi_0222 PF09285 Elongation factor P, C-terminal Thivi_0223 PF00152 tRNA synthetases class II (D, K and N) Thivi_0226 PF00149 Calcineurin-like phosphoesterase Thivi_0228 PF02446 4-alpha-glucanotransferase Thivi_0231 PF06798 PrkA serine protein kinase C-terminal domain Thivi_0231 PF08298 PrkA AAA domain Thivi_0232 PF04285 Protein of unknown function (DUF444) Thivi_0233 PF04293 SpoVR like protein Thivi_0235 PF03734 L,D-transpeptidase catalytic domain Thivi_0236 PF01979 Amidohydrolase family Thivi_0237 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Thivi_0237 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Thivi_0239 PF01121 Dephospho-CoA kinase Thivi_0240 PF01478 Type IV leader peptidase family Thivi_0240 PF06750 Bacterial Peptidase A24 N-terminal domain Thivi_0241 PF00482 Type II secretion system (T2SS), protein F Thivi_0242 PF00437 Type II/IV secretion system protein Thivi_0242 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thivi_0244 PF00501 AMP-binding enzyme Thivi_0244 PF13193 AMP-binding enzyme C-terminal domain Thivi_0244 PF16177 Acetyl-coenzyme A synthetase N-terminus Thivi_0246 PF00571 CBS domain Thivi_0247 PF00474 Sodium:solute symporter family Thivi_0249 PF00291 Pyridoxal-phosphate dependent enzyme Thivi_0249 PF14821 Threonine synthase N terminus Thivi_0250 PF00682 HMGL-like Thivi_0250 PF08502 LeuA allosteric (dimerisation) domain Thivi_0257 PF02322 Cytochrome bd terminal oxidase subunit II Thivi_0258 PF01654 Cytochrome bd terminal oxidase subunit I Thivi_0263 PF02378 Phosphotransferase system, EIIC Thivi_0263 PF00367 phosphotransferase system, EIIB Thivi_0264 PF05524 PEP-utilising enzyme, N-terminal Thivi_0264 PF00381 PTS HPr component phosphorylation site Thivi_0264 PF02896 PEP-utilising enzyme, TIM barrel domain Thivi_0264 PF00391 PEP-utilising enzyme, mobile domain Thivi_0264 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thivi_0266 PF11700 Vacuole effluxer Atg22 like Thivi_0267 PF07152 YaeQ protein Thivi_0270 PF00535 Glycosyl transferase family 2 Thivi_0273 PF01367 5'-3' exonuclease, C-terminal SAM fold Thivi_0273 PF00476 DNA polymerase family A Thivi_0273 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Thivi_0273 PF01612 3'-5' exonuclease Thivi_0274 PF00556 Antenna complex alpha/beta subunit Thivi_0276 PF00556 Antenna complex alpha/beta subunit Thivi_0277 PF00556 Antenna complex alpha/beta subunit Thivi_0278 PF00556 Antenna complex alpha/beta subunit Thivi_0279 PF00556 Antenna complex alpha/beta subunit Thivi_0281 PF00556 Antenna complex alpha/beta subunit Thivi_0282 PF00556 Antenna complex alpha/beta subunit Thivi_0284 PF00556 Antenna complex alpha/beta subunit Thivi_0285 PF00556 Antenna complex alpha/beta subunit Thivi_0286 PF06745 KaiC Thivi_0287 PF07689 KaiB domain Thivi_0288 PF07689 KaiB domain Thivi_0289 PF00989 PAS fold Thivi_0289 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0289 PF16736 Single Cache-like Thivi_0290 PF00072 Response regulator receiver domain Thivi_0290 PF00196 Bacterial regulatory proteins, luxR family Thivi_0292 PF12137 RNA polymerase recycling family C-terminal Thivi_0292 PF18337 RapA N-terminal Tudor like domain Thivi_0292 PF18339 RapA N-terminal Tudor like domain 1 Thivi_0292 PF00176 SNF2 family N-terminal domain Thivi_0292 PF00271 Helicase conserved C-terminal domain Thivi_0293 PF00293 NUDIX domain Thivi_0294 PF00072 Response regulator receiver domain Thivi_0294 PF00486 Transcriptional regulatory protein, C terminal Thivi_0295 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0295 PF11808 Phosphate regulon sensor protein PhoR Thivi_0295 PF00989 PAS fold Thivi_0295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0298 PF01384 Phosphate transporter family Thivi_0299 PF01865 Protein of unknown function DUF47 Thivi_0300 PF00216 Bacterial DNA-binding protein Thivi_0301 PF00575 S1 RNA binding domain Thivi_0302 PF02224 Cytidylate kinase Thivi_0303 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thivi_0307 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0307 PF17200 Single Cache domain 2 Thivi_0307 PF00672 HAMP domain Thivi_0308 PF00072 Response regulator receiver domain Thivi_0310 PF01627 Hpt domain Thivi_0310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0310 PF02895 Signal transducing histidine kinase, homodimeric domain Thivi_0310 PF01584 CheW-like domain Thivi_0310 PF07194 P2 response regulator binding domain Thivi_0311 PF00672 HAMP domain Thivi_0311 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0312 PF01584 CheW-like domain Thivi_0313 PF00893 Small Multidrug Resistance protein Thivi_0314 PF00072 Response regulator receiver domain Thivi_0316 PF00563 EAL domain Thivi_0316 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0316 PF05231 MASE1 Thivi_0316 PF08447 PAS fold Thivi_0316 PF08448 PAS fold Thivi_0316 PF13426 PAS domain Thivi_0317 PF02895 Signal transducing histidine kinase, homodimeric domain Thivi_0317 PF01584 CheW-like domain Thivi_0317 PF09078 CheY binding Thivi_0317 PF01627 Hpt domain Thivi_0317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0318 PF03705 CheR methyltransferase, all-alpha domain Thivi_0318 PF01739 CheR methyltransferase, SAM binding domain Thivi_0319 PF03975 CheD chemotactic sensory transduction Thivi_0320 PF01339 CheB methylesterase Thivi_0320 PF00072 Response regulator receiver domain Thivi_0321 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0321 PF13426 PAS domain Thivi_0321 PF08447 PAS fold Thivi_0322 PF01584 CheW-like domain Thivi_0323 PF00072 Response regulator receiver domain Thivi_0323 PF01339 CheB methylesterase Thivi_0325 PF03705 CheR methyltransferase, all-alpha domain Thivi_0325 PF01739 CheR methyltransferase, SAM binding domain Thivi_0326 PF00486 Transcriptional regulatory protein, C terminal Thivi_0326 PF00072 Response regulator receiver domain Thivi_0327 PF01627 Hpt domain Thivi_0327 PF01584 CheW-like domain Thivi_0327 PF02895 Signal transducing histidine kinase, homodimeric domain Thivi_0327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0327 PF07194 P2 response regulator binding domain Thivi_0329 PF00072 Response regulator receiver domain Thivi_0329 PF00486 Transcriptional regulatory protein, C terminal Thivi_0330 PF12729 Four helix bundle sensory module for signal transduction Thivi_0330 PF00672 HAMP domain Thivi_0330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0331 PF08678 Rsbr N terminal Thivi_0331 PF01740 STAS domain Thivi_0332 PF01740 STAS domain Thivi_0333 PF13581 Histidine kinase-like ATPase domain Thivi_0334 PF13581 Histidine kinase-like ATPase domain Thivi_0336 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0337 PF00486 Transcriptional regulatory protein, C terminal Thivi_0337 PF00072 Response regulator receiver domain Thivi_0338 PF13614 AAA domain Thivi_0339 PF00672 HAMP domain Thivi_0339 PF12729 Four helix bundle sensory module for signal transduction Thivi_0339 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0346 PF06594 Haemolysin-type calcium binding protein related domain Thivi_0346 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Thivi_0351 PF00691 OmpA family Thivi_0351 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thivi_0352 PF01618 MotA/TolQ/ExbB proton channel family Thivi_0356 PF00158 Sigma-54 interaction domain Thivi_0356 PF02954 Bacterial regulatory protein, Fis family Thivi_0356 PF01590 GAF domain Thivi_0357 PF02049 Flagellar hook-basal body complex protein FliE Thivi_0358 PF08345 Flagellar M-ring protein C-terminal Thivi_0358 PF01514 Secretory protein of YscJ/FliF family Thivi_0359 PF14842 FliG N-terminal domain Thivi_0359 PF01706 FliG C-terminal domain Thivi_0359 PF14841 FliG middle domain Thivi_0361 PF18269 T3SS EscN ATPase C-terminal domain Thivi_0361 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_0365 PF02154 Flagellar motor switch protein FliM Thivi_0365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thivi_0366 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thivi_0367 PF04347 Flagellar biosynthesis protein, FliO Thivi_0368 PF00813 FliP family Thivi_0369 PF01313 Bacterial export proteins, family 3 Thivi_0370 PF01311 Bacterial export proteins, family 1 Thivi_0371 PF01312 FlhB HrpN YscU SpaS Family Thivi_0372 PF00771 FHIPEP family Thivi_0373 PF00448 SRP54-type protein, GTPase domain Thivi_0374 PF10609 NUBPL iron-transfer P-loop NTPase Thivi_0375 PF04542 Sigma-70 region 2 Thivi_0375 PF04539 Sigma-70 region 3 Thivi_0375 PF04545 Sigma-70, region 4 Thivi_0376 PF00072 Response regulator receiver domain Thivi_0377 PF04344 Chemotaxis phosphatase, CheZ Thivi_0379 PF04344 Chemotaxis phosphatase, CheZ Thivi_0380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0380 PF07194 P2 response regulator binding domain Thivi_0380 PF01584 CheW-like domain Thivi_0380 PF01627 Hpt domain Thivi_0380 PF02895 Signal transducing histidine kinase, homodimeric domain Thivi_0381 PF00072 Response regulator receiver domain Thivi_0381 PF01339 CheB methylesterase Thivi_0382 PF01618 MotA/TolQ/ExbB proton channel family Thivi_0383 PF00691 OmpA family Thivi_0383 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thivi_0384 PF01584 CheW-like domain Thivi_0386 PF01312 FlhB HrpN YscU SpaS Family Thivi_0392 PF00072 Response regulator receiver domain Thivi_0392 PF01584 CheW-like domain Thivi_0393 PF03705 CheR methyltransferase, all-alpha domain Thivi_0393 PF01739 CheR methyltransferase, SAM binding domain Thivi_0395 PF00460 Flagella basal body rod protein Thivi_0396 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thivi_0396 PF00460 Flagella basal body rod protein Thivi_0397 PF03963 Flagellar hook capping protein - N-terminal region Thivi_0397 PF13861 FlgD Tudor-like domain Thivi_0397 PF13860 FlgD Ig-like domain Thivi_0398 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thivi_0398 PF07559 Flagellar basal body protein FlaE Thivi_0398 PF00460 Flagella basal body rod protein Thivi_0399 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thivi_0399 PF00460 Flagella basal body rod protein Thivi_0400 PF00460 Flagella basal body rod protein Thivi_0400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thivi_0401 PF02107 Flagellar L-ring protein Thivi_0402 PF02119 Flagellar P-ring protein Thivi_0403 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thivi_0403 PF10135 Rod binding protein Thivi_0404 PF07196 Flagellin hook IN motif Thivi_0404 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thivi_0404 PF07196 Flagellin hook IN motif Thivi_0404 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thivi_0405 PF00669 Bacterial flagellin N-terminal helical region Thivi_0409 PF17209 Hfq protein Thivi_0410 PF13167 GTP-binding GTPase N-terminal Thivi_0410 PF16360 GTP-binding GTPase Middle Region Thivi_0410 PF01926 50S ribosome-binding GTPase Thivi_0411 PF12221 Bacterial membrane protein N terminal Thivi_0411 PF01145 SPFH domain / Band 7 family Thivi_0412 PF01145 SPFH domain / Band 7 family Thivi_0413 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0413 PF00072 Response regulator receiver domain Thivi_0413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0413 PF00672 HAMP domain Thivi_0413 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_0413 PF01627 Hpt domain Thivi_0415 PF13393 Histidyl-tRNA synthetase Thivi_0416 PF00709 Adenylosuccinate synthetase Thivi_0418 PF02743 Cache domain Thivi_0418 PF00672 HAMP domain Thivi_0418 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0420 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thivi_0420 PF01926 50S ribosome-binding GTPase Thivi_0423 PF13808 DDE_Tnp_1-associated Thivi_0423 PF01609 Transposase DDE domain Thivi_0426 PF00583 Acetyltransferase (GNAT) family Thivi_0430 PF01381 Helix-turn-helix Thivi_0435 PF13018 Extended Signal Peptide of Type V secretion system Thivi_0435 PF03543 Yersinia/Haemophilus virulence surface antigen Thivi_0435 PF05860 haemagglutination activity domain Thivi_0435 PF13332 Hemagglutinin repeat Thivi_0435 PF02661 Fic/DOC family Thivi_0436 PF00561 alpha/beta hydrolase fold Thivi_0437 PF01139 tRNA-splicing ligase RtcB Thivi_0438 PF00472 RF-1 domain Thivi_0439 PF08447 PAS fold Thivi_0439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0439 PF08447 PAS fold Thivi_0439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0440 PF01926 50S ribosome-binding GTPase Thivi_0440 PF10396 GTP-binding protein TrmE N-terminus Thivi_0440 PF12631 MnmE helical domain Thivi_0441 PF01926 50S ribosome-binding GTPase Thivi_0441 PF13167 GTP-binding GTPase N-terminal Thivi_0441 PF16360 GTP-binding GTPase Middle Region Thivi_0442 PF00768 D-alanyl-D-alanine carboxypeptidase Thivi_0443 PF03006 Haemolysin-III related Thivi_0444 PF04102 SlyX Thivi_0447 PF01475 Ferric uptake regulator family Thivi_0450 PF05992 SbmA/BacA-like family Thivi_0456 PF18019 HD domain Thivi_0456 PF00270 DEAD/DEAH box helicase Thivi_0456 PF00271 Helicase conserved C-terminal domain Thivi_0457 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) Thivi_0459 PF09344 CT1975-like protein Thivi_0460 PF09704 CRISPR-associated protein (Cas_Cas5) Thivi_0461 PF08798 CRISPR associated protein Thivi_0465 PF01867 CRISPR associated protein Cas1 Thivi_0466 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Thivi_0467 PF00149 Calcineurin-like phosphoesterase Thivi_0468 PF04379 ApaG domain Thivi_0470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thivi_0470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thivi_0472 PF03023 Lipid II flippase MurJ Thivi_0475 PF01649 Ribosomal protein S20 Thivi_0476 PF00571 CBS domain Thivi_0476 PF00005 ABC transporter Thivi_0477 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_0479 PF01790 Prolipoprotein diacylglyceryl transferase Thivi_0481 PF01975 Survival protein SurE Thivi_0483 PF01551 Peptidase family M23 Thivi_0483 PF01476 LysM domain Thivi_0484 PF04545 Sigma-70, region 4 Thivi_0484 PF04542 Sigma-70 region 2 Thivi_0484 PF04539 Sigma-70 region 3 Thivi_0484 PF00140 Sigma-70 factor, region 1.2 Thivi_0485 PF00266 Aminotransferase class-V Thivi_0486 PF04324 BFD-like [2Fe-2S] binding domain Thivi_0486 PF01106 NifU-like domain Thivi_0486 PF01592 NifU-like N terminal domain Thivi_0488 PF00106 short chain dehydrogenase Thivi_0490 PF05736 OprF membrane domain Thivi_0490 PF00691 OmpA family Thivi_0491 PF00871 Acetokinase family Thivi_0492 PF07085 DRTGG domain Thivi_0492 PF01515 Phosphate acetyl/butaryl transferase Thivi_0494 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Thivi_0494 PF00361 Proton-conducting membrane transporter Thivi_0494 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thivi_0494 PF13244 Domain of unknown function (DUF4040) Thivi_0495 PF00146 NADH dehydrogenase Thivi_0496 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_0497 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thivi_0498 PF00374 Nickel-dependent hydrogenase Thivi_0498 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thivi_0498 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thivi_0500 PF00149 Calcineurin-like phosphoesterase Thivi_0501 PF02915 Rubrerythrin Thivi_0503 PF02542 YgbB family Thivi_0504 PF01142 tRNA pseudouridine synthase D (TruD) Thivi_0510 PF17785 PUA-like domain Thivi_0510 PF10672 S-adenosylmethionine-dependent methyltransferase Thivi_0512 PF17760 UvrA interaction domain Thivi_0512 PF17755 UvrA DNA-binding domain Thivi_0512 PF00005 ABC transporter Thivi_0515 PF00588 SpoU rRNA Methylase family Thivi_0515 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thivi_0516 PF00575 S1 RNA binding domain Thivi_0516 PF17876 Cold shock domain Thivi_0516 PF00773 RNB domain Thivi_0516 PF08206 Ribonuclease B OB domain Thivi_0516 PF08461 Ribonuclease R winged-helix domain Thivi_0520 PF00682 HMGL-like Thivi_0520 PF07836 DmpG-like communication domain Thivi_0521 PF00285 Citrate synthase, C-terminal domain Thivi_0526 PF01370 NAD dependent epimerase/dehydratase family Thivi_0527 PF00005 ABC transporter Thivi_0527 PF00664 ABC transporter transmembrane region Thivi_0528 PF01895 PhoU domain Thivi_0529 PF00989 PAS fold Thivi_0529 PF00563 EAL domain Thivi_0529 PF01590 GAF domain Thivi_0529 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0530 PF17200 Single Cache domain 2 Thivi_0530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0530 PF00672 HAMP domain Thivi_0534 PF18073 Rubredoxin metal binding domain Thivi_0536 PF00483 Nucleotidyl transferase Thivi_0538 PF12146 Serine aminopeptidase, S33 Thivi_0539 PF04358 DsrC like protein Thivi_0544 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thivi_0544 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thivi_0545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thivi_0545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thivi_0546 PF02635 DsrE/DsrF-like family Thivi_0547 PF02635 DsrE/DsrF-like family Thivi_0549 PF04358 DsrC like protein Thivi_0552 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_0552 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thivi_0554 PF13247 4Fe-4S dicluster domain Thivi_0556 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thivi_0556 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thivi_0558 PF00291 Pyridoxal-phosphate dependent enzyme Thivi_0559 PF02743 Cache domain Thivi_0559 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_0559 PF00672 HAMP domain Thivi_0560 PF00072 Response regulator receiver domain Thivi_0560 PF00486 Transcriptional regulatory protein, C terminal Thivi_0561 PF03707 Bacterial signalling protein N terminal repeat Thivi_0561 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0561 PF00563 EAL domain Thivi_0562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0562 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0562 PF00072 Response regulator receiver domain Thivi_0562 PF08448 PAS fold Thivi_0562 PF13188 PAS domain Thivi_0563 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0563 PF00672 HAMP domain Thivi_0563 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_0563 PF00072 Response regulator receiver domain Thivi_0563 PF01627 Hpt domain Thivi_0563 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0565 PF04371 Porphyromonas-type peptidyl-arginine deiminase Thivi_0568 PF01027 Inhibitor of apoptosis-promoting Bax1 Thivi_0576 PF07728 AAA domain (dynein-related subfamily) Thivi_0576 PF12556 Cobaltochelatase CobS subunit N terminal Thivi_0576 PF08406 CbbQ/NirQ/NorQ C-terminal Thivi_0585 PF17862 AAA+ lid domain Thivi_0585 PF01434 Peptidase family M41 Thivi_0585 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_0587 PF02384 N-6 DNA Methylase Thivi_0590 PF01420 Type I restriction modification DNA specificity domain Thivi_0591 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Thivi_0591 PF11867 Domain of unknown function (DUF3387) Thivi_0591 PF18766 SWI2/SNF2 ATPase Thivi_0595 PF13808 DDE_Tnp_1-associated Thivi_0595 PF01609 Transposase DDE domain Thivi_0596 PF00589 Phage integrase family Thivi_0596 PF14659 Phage integrase, N-terminal SAM-like domain Thivi_0596 PF13356 Arm DNA-binding domain Thivi_0598 PF00850 Histone deacetylase domain Thivi_0599 PF00583 Acetyltransferase (GNAT) family Thivi_0599 PF13380 CoA binding domain Thivi_0599 PF13607 Succinyl-CoA ligase like flavodoxin domain Thivi_0600 PF00890 FAD binding domain Thivi_0600 PF02910 Fumarate reductase flavoprotein C-term Thivi_0601 PF08281 Sigma-70, region 4 Thivi_0601 PF04542 Sigma-70 region 2 Thivi_0603 PF17188 MucB/RseB C-terminal domain Thivi_0603 PF03888 MucB/RseB N-terminal domain Thivi_0605 PF13180 PDZ domain Thivi_0605 PF17820 PDZ domain Thivi_0606 PF06421 GTP-binding protein LepA C-terminus Thivi_0606 PF00009 Elongation factor Tu GTP binding domain Thivi_0606 PF00679 Elongation factor G C-terminus Thivi_0607 PF10502 Signal peptidase, peptidase S26 Thivi_0609 PF00035 Double-stranded RNA binding motif Thivi_0609 PF14622 Ribonuclease-III-like Thivi_0610 PF01926 50S ribosome-binding GTPase Thivi_0610 PF07650 KH domain Thivi_0611 PF02565 Recombination protein O C terminal Thivi_0611 PF11967 Recombination protein O N terminal Thivi_0612 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Thivi_0614 PF05922 Peptidase inhibitor I9 Thivi_0614 PF00082 Subtilase family Thivi_0615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thivi_0615 PF01568 Molydopterin dinucleotide binding domain Thivi_0615 PF00384 Molybdopterin oxidoreductase Thivi_0617 PF01985 CRS1 / YhbY (CRM) domain Thivi_0618 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thivi_0618 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thivi_0618 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thivi_0618 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thivi_0619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0619 PF00183 Hsp90 protein Thivi_0620 PF05191 Adenylate kinase, active site lid Thivi_0621 PF00085 Thioredoxin Thivi_0623 PF02082 Transcriptional regulator Thivi_0624 PF05175 Methyltransferase small domain Thivi_0626 PF04055 Radical SAM superfamily Thivi_0626 PF06969 HemN C-terminal domain Thivi_0627 PF05697 Bacterial trigger factor protein (TF) Thivi_0627 PF05698 Bacterial trigger factor protein (TF) C-terminus Thivi_0627 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thivi_0628 PF00574 Clp protease Thivi_0629 PF07724 AAA domain (Cdc48 subfamily) Thivi_0629 PF06689 ClpX C4-type zinc finger Thivi_0629 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_0630 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_0630 PF05362 Lon protease (S16) C-terminal proteolytic domain Thivi_0630 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thivi_0631 PF00216 Bacterial DNA-binding protein Thivi_0634 PF13145 PPIC-type PPIASE domain Thivi_0635 PF01012 Electron transfer flavoprotein domain Thivi_0636 PF00766 Electron transfer flavoprotein FAD-binding domain Thivi_0636 PF01012 Electron transfer flavoprotein domain Thivi_0637 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Thivi_0637 PF02770 Acyl-CoA dehydrogenase, middle domain Thivi_0637 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Thivi_0638 PF07584 Aerotolerance regulator N-terminal Thivi_0638 PF00092 von Willebrand factor type A domain Thivi_0640 PF00266 Aminotransferase class-V Thivi_0642 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0642 PF08448 PAS fold Thivi_0644 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_0644 PF00072 Response regulator receiver domain Thivi_0644 PF01627 Hpt domain Thivi_0644 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0644 PF00672 HAMP domain Thivi_0645 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thivi_0645 PF01464 Transglycosylase SLT domain Thivi_0646 PF00072 Response regulator receiver domain Thivi_0646 PF00486 Transcriptional regulatory protein, C terminal Thivi_0647 PF00672 HAMP domain Thivi_0647 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0647 PF01627 Hpt domain Thivi_0647 PF00072 Response regulator receiver domain Thivi_0647 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0647 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_0648 PF03707 Bacterial signalling protein N terminal repeat Thivi_0648 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0648 PF00563 EAL domain Thivi_0650 PF08668 HDOD domain Thivi_0650 PF00563 EAL domain Thivi_0653 PF13732 Domain of unknown function (DUF4162) Thivi_0653 PF00005 ABC transporter Thivi_0655 PF02674 Colicin V production protein Thivi_0656 PF00156 Phosphoribosyl transferase domain Thivi_0657 PF01053 Cys/Met metabolism PLP-dependent enzyme Thivi_0660 PF00166 Chaperonin 10 Kd subunit Thivi_0661 PF00118 TCP-1/cpn60 chaperonin family Thivi_0663 PF00011 Hsp20/alpha crystallin family Thivi_0664 PF00011 Hsp20/alpha crystallin family Thivi_0668 PF13361 UvrD-like helicase C-terminal domain Thivi_0668 PF00580 UvrD/REP helicase N-terminal domain Thivi_0669 PF01709 Transcriptional regulator Thivi_0671 PF02075 Crossover junction endodeoxyribonuclease RuvC Thivi_0672 PF01330 RuvA N terminal domain Thivi_0672 PF07499 RuvA, C-terminal domain Thivi_0673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0673 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0673 PF00072 Response regulator receiver domain Thivi_0673 PF00672 HAMP domain Thivi_0673 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_0673 PF01627 Hpt domain Thivi_0674 PF01565 FAD binding domain Thivi_0675 PF13183 4Fe-4S dicluster domain Thivi_0675 PF02754 Cysteine-rich domain Thivi_0676 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thivi_0676 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Thivi_0678 PF07075 Protein of unknown function (DUF1343) Thivi_0679 PF02547 Queuosine biosynthesis protein Thivi_0681 PF00270 DEAD/DEAH box helicase Thivi_0681 PF00271 Helicase conserved C-terminal domain Thivi_0682 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Thivi_0684 PF03099 Biotin/lipoate A/B protein ligase family Thivi_0684 PF02237 Biotin protein ligase C terminal domain Thivi_0686 PF03309 Type III pantothenate kinase Thivi_0689 PF00809 Pterin binding enzyme Thivi_0690 PF00912 Transglycosylase Thivi_0691 PF00912 Transglycosylase Thivi_0691 PF00905 Penicillin binding protein transpeptidase domain Thivi_0691 PF17092 Penicillin-binding protein OB-like domain Thivi_0693 PF00672 HAMP domain Thivi_0693 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0693 PF01627 Hpt domain Thivi_0693 PF00072 Response regulator receiver domain Thivi_0693 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_0693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0694 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0694 PF17151 Periplasmic sensor domain Thivi_0695 PF03707 Bacterial signalling protein N terminal repeat Thivi_0695 PF00563 EAL domain Thivi_0695 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0696 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Thivi_0697 PF05661 Protein of unknown function (DUF808) Thivi_0701 PF03350 Uncharacterized protein family, UPF0114 Thivi_0702 PF00563 EAL domain Thivi_0702 PF00990 Diguanylate cyclase, GGDEF domain Thivi_0702 PF01590 GAF domain Thivi_0702 PF00360 Phytochrome region Thivi_0705 PF07690 Major Facilitator Superfamily Thivi_0706 PF00072 Response regulator receiver domain Thivi_0706 PF01627 Hpt domain Thivi_0706 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0707 PF00873 AcrB/AcrD/AcrF family Thivi_0708 PF13533 Biotin-lipoyl like Thivi_0709 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thivi_0709 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thivi_0711 PF00166 Chaperonin 10 Kd subunit Thivi_0712 PF00118 TCP-1/cpn60 chaperonin family Thivi_0713 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thivi_0714 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thivi_0715 PF07715 TonB-dependent Receptor Plug Domain Thivi_0715 PF00593 TonB dependent receptor Thivi_0717 PF02277 Phosphoribosyltransferase Thivi_0718 PF02654 Cobalamin-5-phosphate synthase Thivi_0721 PF00753 Metallo-beta-lactamase superfamily Thivi_0721 PF03772 Competence protein Thivi_0721 PF13567 Domain of unknown function (DUF4131) Thivi_0724 PF00005 ABC transporter Thivi_0725 PF02687 FtsX-like permease family Thivi_0725 PF12704 MacB-like periplasmic core domain Thivi_0726 PF03739 Lipopolysaccharide export system permease LptF/LptG Thivi_0728 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Thivi_0728 PF01433 Peptidase family M1 domain Thivi_0728 PF11940 Domain of unknown function (DUF3458) Ig-like fold Thivi_0729 PF00462 Glutaredoxin Thivi_0730 PF01479 S4 domain Thivi_0735 PF13194 Domain of unknown function (DUF4010) Thivi_0737 PF01063 Amino-transferase class IV Thivi_0738 PF08335 GlnD PII-uridylyltransferase Thivi_0738 PF03710 Glutamate-ammonia ligase adenylyltransferase Thivi_0739 PF01263 Aldose 1-epimerase Thivi_0740 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thivi_0740 PF10091 Putative glucoamylase Thivi_0740 PF06165 Glycosyltransferase family 36 Thivi_0742 PF02599 Global regulator protein family Thivi_0743 PF13840 ACT domain Thivi_0743 PF00696 Amino acid kinase family Thivi_0743 PF01842 ACT domain Thivi_0744 PF01411 tRNA synthetases class II (A) Thivi_0744 PF02272 DHHA1 domain Thivi_0744 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thivi_0745 PF02631 RecX family Thivi_0746 PF00154 recA bacterial DNA recombination protein Thivi_0748 PF02464 Competence-damaged protein Thivi_0749 PF00069 Protein kinase domain Thivi_0755 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Thivi_0756 PF00535 Glycosyl transferase family 2 Thivi_0757 PF04751 Protein of unknown function (DUF615) Thivi_0758 PF17768 RecJ OB domain Thivi_0758 PF01368 DHH family Thivi_0758 PF02272 DHHA1 domain Thivi_0759 PF02687 FtsX-like permease family Thivi_0759 PF00005 ABC transporter Thivi_0759 PF12704 MacB-like periplasmic core domain Thivi_0760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thivi_0762 PF01571 Aminomethyltransferase folate-binding domain Thivi_0769 PF01722 BolA-like protein Thivi_0771 PF01235 Sodium:alanine symporter family Thivi_0772 PF02561 Flagellar protein FliS Thivi_0775 PF03646 FlaG protein Thivi_0776 PF00669 Bacterial flagellin N-terminal helical region Thivi_0776 PF00700 Bacterial flagellin C-terminal helical region Thivi_0781 PF00989 PAS fold Thivi_0781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0781 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0781 PF16736 Single Cache-like Thivi_0782 PF00072 Response regulator receiver domain Thivi_0782 PF00486 Transcriptional regulatory protein, C terminal Thivi_0797 PF13181 Tetratricopeptide repeat Thivi_0799 PF07963 Prokaryotic N-terminal methylation motif Thivi_0799 PF00114 Pilin (bacterial filament) Thivi_0801 PF13276 HTH-like domain Thivi_0801 PF00665 Integrase core domain Thivi_0801 PF13333 Integrase core domain Thivi_0804 PF03819 MazG nucleotide pyrophosphohydrolase domain Thivi_0805 PF00293 NUDIX domain Thivi_0806 PF04551 GcpE protein Thivi_0809 PF00472 RF-1 domain Thivi_0810 PF00582 Universal stress protein family Thivi_0813 PF00005 ABC transporter Thivi_0813 PF12704 MacB-like periplasmic core domain Thivi_0813 PF02687 FtsX-like permease family Thivi_0827 PF00270 DEAD/DEAH box helicase Thivi_0827 PF03880 DbpA RNA binding domain Thivi_0827 PF00271 Helicase conserved C-terminal domain Thivi_0833 PF01797 Transposase IS200 like Thivi_0835 PF00085 Thioredoxin Thivi_0836 PF00085 Thioredoxin Thivi_0838 PF11734 TilS substrate C-terminal domain Thivi_0838 PF09179 TilS substrate binding domain Thivi_0838 PF01171 PP-loop family Thivi_0840 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Thivi_0843 PF00795 Carbon-nitrogen hydrolase Thivi_0845 PF00355 Rieske [2Fe-2S] domain Thivi_0849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_0849 PF00989 PAS fold Thivi_0849 PF00512 His Kinase A (phospho-acceptor) domain Thivi_0850 PF00072 Response regulator receiver domain Thivi_0850 PF00196 Bacterial regulatory proteins, luxR family Thivi_0851 PF01797 Transposase IS200 like Thivi_0853 PF03781 Sulfatase-modifying factor enzyme 1 Thivi_0858 PF02001 Protein of unknown function DUF134 Thivi_0859 PF00355 Rieske [2Fe-2S] domain Thivi_0859 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Thivi_0863 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thivi_0868 PF00158 Sigma-54 interaction domain Thivi_0868 PF00072 Response regulator receiver domain Thivi_0868 PF02954 Bacterial regulatory protein, Fis family Thivi_0871 PF00072 Response regulator receiver domain Thivi_0871 PF00196 Bacterial regulatory proteins, luxR family Thivi_0872 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thivi_0874 PF07584 Aerotolerance regulator N-terminal Thivi_0874 PF00092 von Willebrand factor type A domain Thivi_0876 PF00669 Bacterial flagellin N-terminal helical region Thivi_0876 PF00700 Bacterial flagellin C-terminal helical region Thivi_0877 PF13847 Methyltransferase domain Thivi_0882 PF05711 Macrocin-O-methyltransferase (TylF) Thivi_0884 PF08484 C-methyltransferase C-terminal domain Thivi_0884 PF08421 Putative zinc binding domain Thivi_0885 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Thivi_0886 PF16363 GDP-mannose 4,6 dehydratase Thivi_0887 PF00483 Nucleotidyl transferase Thivi_0890 PF00255 Glutathione peroxidase Thivi_0891 PF00970 Oxidoreductase FAD-binding domain Thivi_0891 PF00175 Oxidoreductase NAD-binding domain Thivi_0892 PF01569 PAP2 superfamily Thivi_0893 PF14306 PUA-like domain Thivi_0893 PF01747 ATP-sulfurylase Thivi_0895 PF01464 Transglycosylase SLT domain Thivi_0895 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thivi_0896 PF05951 Bacterial protein of unknown function (DUF882) Thivi_0897 PF00773 RNB domain Thivi_0898 PF00005 ABC transporter Thivi_0898 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thivi_0900 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_0900 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thivi_0902 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_0903 PF12911 N-terminal TM domain of oligopeptide transport permease C Thivi_0903 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_0913 PF02384 N-6 DNA Methylase Thivi_0913 PF12161 HsdM N-terminal domain Thivi_0914 PF02875 Mur ligase family, glutamate ligase domain Thivi_0914 PF08245 Mur ligase middle domain Thivi_0915 PF01039 Carboxyl transferase domain Thivi_0915 PF17848 Acetyl-coA carboxylase zinc finger domain Thivi_0916 PF00290 Tryptophan synthase alpha chain Thivi_0917 PF00291 Pyridoxal-phosphate dependent enzyme Thivi_0918 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thivi_0919 PF01416 tRNA pseudouridine synthase Thivi_0921 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thivi_0921 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thivi_0922 PF00180 Isocitrate/isopropylmalate dehydrogenase Thivi_0923 PF00694 Aconitase C-terminal domain Thivi_0924 PF00330 Aconitase family (aconitate hydratase) Thivi_0925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thivi_0925 PF02403 Seryl-tRNA synthetase N-terminal domain Thivi_0928 PF00005 ABC transporter Thivi_0928 PF02687 FtsX-like permease family Thivi_0928 PF12704 MacB-like periplasmic core domain Thivi_0929 PF00005 ABC transporter Thivi_0929 PF12704 MacB-like periplasmic core domain Thivi_0929 PF02687 FtsX-like permease family Thivi_0930 PF02687 FtsX-like permease family Thivi_0930 PF00005 ABC transporter Thivi_0930 PF12704 MacB-like periplasmic core domain Thivi_0932 PF01475 Ferric uptake regulator family Thivi_0933 PF04355 SmpA / OmlA family Thivi_0934 PF03658 RnfH family Ubiquitin Thivi_0935 PF03364 Polyketide cyclase / dehydrase and lipid transport Thivi_0936 PF00209 Sodium:neurotransmitter symporter family Thivi_0937 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thivi_0937 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thivi_0937 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thivi_0937 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thivi_0938 PF01434 Peptidase family M41 Thivi_0938 PF06480 FtsH Extracellular Thivi_0938 PF17862 AAA+ lid domain Thivi_0938 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_0939 PF01728 FtsJ-like methyltransferase Thivi_0941 PF01355 High potential iron-sulfur protein Thivi_0942 PF00877 NlpC/P60 family Thivi_0943 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_0945 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Thivi_0946 PF04377 Arginine-tRNA-protein transferase, C terminus Thivi_0946 PF04376 Arginine-tRNA-protein transferase, N terminus Thivi_0947 PF01176 Translation initiation factor 1A / IF-1 Thivi_0948 PF00211 Adenylate and Guanylate cyclase catalytic domain Thivi_0961 PF00186 Dihydrofolate reductase Thivi_0963 PF01467 Cytidylyltransferase-like Thivi_0967 PF12849 PBP superfamily domain Thivi_0968 PF00005 ABC transporter Thivi_0969 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_0970 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_0971 PF12849 PBP superfamily domain Thivi_0973 PF12849 PBP superfamily domain Thivi_0974 PF00343 Carbohydrate phosphorylase Thivi_0975 PF03976 Polyphosphate kinase 2 (PPK2) Thivi_0976 PF01515 Phosphate acetyl/butaryl transferase Thivi_0977 PF00871 Acetokinase family Thivi_0979 PF11339 Protein of unknown function (DUF3141) Thivi_0980 PF07859 alpha/beta hydrolase fold Thivi_0982 PF05685 Putative restriction endonuclease Thivi_0983 PF00171 Aldehyde dehydrogenase family Thivi_0985 PF04390 Lipopolysaccharide-assembly Thivi_0986 PF13603 Leucyl-tRNA synthetase, Domain 2 Thivi_0986 PF00133 tRNA synthetases class I (I, L, M and V) Thivi_0986 PF08264 Anticodon-binding domain of tRNA Thivi_0988 PF02861 Clp amino terminal domain, pathogenicity island component Thivi_0988 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_0988 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_0988 PF17871 AAA lid domain Thivi_0988 PF07724 AAA domain (Cdc48 subfamily) Thivi_0989 PF00501 AMP-binding enzyme Thivi_0992 PF01435 Peptidase family M48 Thivi_0994 PF01227 GTP cyclohydrolase I Thivi_0995 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thivi_0995 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thivi_1003 PF10369 Small subunit of acetolactate synthase Thivi_1004 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thivi_1004 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thivi_1004 PF00205 Thiamine pyrophosphate enzyme, central domain Thivi_1006 PF04073 Aminoacyl-tRNA editing domain Thivi_1006 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thivi_1006 PF03129 Anticodon binding domain Thivi_1007 PF07977 FabA-like domain Thivi_1008 PF04364 DNA polymerase III chi subunit, HolC Thivi_1009 PF00672 HAMP domain Thivi_1009 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1009 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1009 PF01627 Hpt domain Thivi_1009 PF00072 Response regulator receiver domain Thivi_1009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1010 PF00072 Response regulator receiver domain Thivi_1011 PF00595 PDZ domain Thivi_1011 PF13180 PDZ domain Thivi_1015 PF03186 CobD/Cbib protein Thivi_1018 PF10609 NUBPL iron-transfer P-loop NTPase Thivi_1019 PF13614 AAA domain Thivi_1022 PF01636 Phosphotransferase enzyme family Thivi_1024 PF05161 MOFRL family Thivi_1024 PF13660 Domain of unknown function (DUF4147) Thivi_1026 PF00293 NUDIX domain Thivi_1027 PF01336 OB-fold nucleic acid binding domain Thivi_1027 PF00152 tRNA synthetases class II (D, K and N) Thivi_1027 PF02938 GAD domain Thivi_1028 PF13419 Haloacid dehalogenase-like hydrolase Thivi_1030 PF00464 Serine hydroxymethyltransferase Thivi_1031 PF03477 ATP cone domain Thivi_1032 PF01872 RibD C-terminal domain Thivi_1032 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thivi_1033 PF00677 Lumazine binding domain Thivi_1034 PF00925 GTP cyclohydrolase II Thivi_1034 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thivi_1035 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thivi_1036 PF01029 NusB family Thivi_1037 PF02769 AIR synthase related protein, C-terminal domain Thivi_1037 PF00586 AIR synthase related protein, N-terminal domain Thivi_1040 PF00403 Heavy-metal-associated domain Thivi_1043 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Thivi_1043 PF12801 4Fe-4S binding domain Thivi_1043 PF13746 4Fe-4S dicluster domain Thivi_1044 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Thivi_1044 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thivi_1047 PF00115 Cytochrome C and Quinol oxidase polypeptide I Thivi_1048 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Thivi_1049 PF03334 Na+/H+ antiporter subunit Thivi_1052 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thivi_1053 PF00361 Proton-conducting membrane transporter Thivi_1054 PF00361 Proton-conducting membrane transporter Thivi_1056 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_1057 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thivi_1058 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thivi_1062 PF01899 Na+/H+ ion antiporter subunit Thivi_1064 PF01336 OB-fold nucleic acid binding domain Thivi_1064 PF02811 PHP domain Thivi_1064 PF14579 Helix-hairpin-helix motif Thivi_1064 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thivi_1064 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thivi_1065 PF00578 AhpC/TSA family Thivi_1066 PF03631 Virulence factor BrkB Thivi_1069 PF03966 Trm112p-like protein Thivi_1073 PF01867 CRISPR associated protein Cas1 Thivi_1079 PF00271 Helicase conserved C-terminal domain Thivi_1079 PF18019 HD domain Thivi_1079 PF00270 DEAD/DEAH box helicase Thivi_1084 PF01883 Iron-sulfur cluster assembly protein Thivi_1085 PF01458 Uncharacterized protein family (UPF0051) Thivi_1086 PF00005 ABC transporter Thivi_1087 PF01458 Uncharacterized protein family (UPF0051) Thivi_1090 PF12792 CSS motif domain associated with EAL Thivi_1090 PF00563 EAL domain Thivi_1095 PF03091 CutA1 divalent ion tolerance protein Thivi_1096 PF02683 Cytochrome C biogenesis protein transmembrane region Thivi_1096 PF11412 Disulphide bond corrector protein DsbC Thivi_1097 PF08534 Redoxin Thivi_1099 PF01220 Dehydroquinase class II Thivi_1100 PF00364 Biotin-requiring enzyme Thivi_1101 PF00289 Biotin carboxylase, N-terminal domain Thivi_1101 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thivi_1101 PF02785 Biotin carboxylase C-terminal domain Thivi_1104 PF01555 DNA methylase Thivi_1108 PF13649 Methyltransferase domain Thivi_1110 PF01207 Dihydrouridine synthase (Dus) Thivi_1111 PF02954 Bacterial regulatory protein, Fis family Thivi_1112 PF02142 MGS-like domain Thivi_1112 PF01808 AICARFT/IMPCHase bienzyme Thivi_1113 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_1113 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Thivi_1115 PF02844 Phosphoribosylglycinamide synthetase, N domain Thivi_1115 PF02843 Phosphoribosylglycinamide synthetase, C domain Thivi_1115 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thivi_1116 PF00072 Response regulator receiver domain Thivi_1120 PF01636 Phosphotransferase enzyme family Thivi_1121 PF03968 OstA-like protein Thivi_1121 PF04453 LPS transport system D Thivi_1122 PF09312 SurA N-terminal domain Thivi_1122 PF00639 PPIC-type PPIASE domain Thivi_1123 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Thivi_1124 PF01066 CDP-alcohol phosphatidyltransferase Thivi_1126 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thivi_1126 PF00037 4Fe-4S binding domain Thivi_1126 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thivi_1128 PF00384 Molybdopterin oxidoreductase Thivi_1128 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thivi_1128 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Thivi_1129 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_1131 PF00374 Nickel-dependent hydrogenase Thivi_1133 PF00106 short chain dehydrogenase Thivi_1134 PF00708 Acylphosphatase Thivi_1136 PF03358 NADPH-dependent FMN reductase Thivi_1137 PF00308 Bacterial dnaA protein Thivi_1138 PF01066 CDP-alcohol phosphatidyltransferase Thivi_1139 PF00586 AIR synthase related protein, N-terminal domain Thivi_1139 PF02769 AIR synthase related protein, C-terminal domain Thivi_1140 PF00551 Formyl transferase Thivi_1145 PF00149 Calcineurin-like phosphoesterase Thivi_1146 PF01430 Hsp33 protein Thivi_1147 PF04079 Segregation and condensation complex subunit ScpB Thivi_1148 PF02616 Segregation and condensation protein ScpA Thivi_1149 PF00579 tRNA synthetases class I (W and Y) Thivi_1150 PF02163 Peptidase family M50 Thivi_1151 PF01300 Telomere recombination Thivi_1152 PF02811 PHP domain Thivi_1154 PF12729 Four helix bundle sensory module for signal transduction Thivi_1154 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_1154 PF00672 HAMP domain Thivi_1155 PF00128 Alpha amylase, catalytic domain Thivi_1157 PF05116 Sucrose-6F-phosphate phosphohydrolase Thivi_1157 PF05166 YcgL domain Thivi_1158 PF00862 Sucrose synthase Thivi_1158 PF00534 Glycosyl transferases group 1 Thivi_1159 PF01618 MotA/TolQ/ExbB proton channel family Thivi_1160 PF02472 Biopolymer transport protein ExbD/TolR Thivi_1164 PF00909 Ammonium Transporter Family Thivi_1166 PF01891 Cobalt uptake substrate-specific transmembrane region Thivi_1169 PF00005 ABC transporter Thivi_1174 PF01402 Ribbon-helix-helix protein, copG family Thivi_1174 PF08753 NikR C terminal nickel binding domain Thivi_1177 PF14403 Circularly permuted ATP-grasp type 2 Thivi_1181 PF03796 DnaB-like helicase C terminal domain Thivi_1181 PF00772 DnaB-like helicase N terminal domain Thivi_1182 PF03948 Ribosomal protein L9, C-terminal domain Thivi_1182 PF01281 Ribosomal protein L9, N-terminal domain Thivi_1184 PF01084 Ribosomal protein S18 Thivi_1185 PF01250 Ribosomal protein S6 Thivi_1194 PF01381 Helix-turn-helix Thivi_1197 PF01609 Transposase DDE domain Thivi_1197 PF13808 DDE_Tnp_1-associated Thivi_1198 PF01842 ACT domain Thivi_1199 PF00578 AhpC/TSA family Thivi_1200 PF02562 PhoH-like protein Thivi_1200 PF13638 PIN domain Thivi_1201 PF00291 Pyridoxal-phosphate dependent enzyme Thivi_1202 PF00072 Response regulator receiver domain Thivi_1203 PF00072 Response regulator receiver domain Thivi_1204 PF00072 Response regulator receiver domain Thivi_1205 PF00672 HAMP domain Thivi_1205 PF00072 Response regulator receiver domain Thivi_1205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1205 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1205 PF01627 Hpt domain Thivi_1206 PF00672 HAMP domain Thivi_1206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1206 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1206 PF00072 Response regulator receiver domain Thivi_1206 PF01627 Hpt domain Thivi_1206 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1207 PF00072 Response regulator receiver domain Thivi_1211 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_1211 PF00672 HAMP domain Thivi_1211 PF02203 Tar ligand binding domain homologue Thivi_1213 PF02954 Bacterial regulatory protein, Fis family Thivi_1213 PF00072 Response regulator receiver domain Thivi_1213 PF00158 Sigma-54 interaction domain Thivi_1214 PF13466 STAS domain Thivi_1215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1215 PF01627 Hpt domain Thivi_1215 PF00072 Response regulator receiver domain Thivi_1215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1215 PF00672 HAMP domain Thivi_1215 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1216 PF00072 Response regulator receiver domain Thivi_1217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1217 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1218 PF01339 CheB methylesterase Thivi_1218 PF00072 Response regulator receiver domain Thivi_1219 PF00672 HAMP domain Thivi_1219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_1219 PF02743 Cache domain Thivi_1220 PF03975 CheD chemotactic sensory transduction Thivi_1221 PF03705 CheR methyltransferase, all-alpha domain Thivi_1221 PF01739 CheR methyltransferase, SAM binding domain Thivi_1222 PF00672 HAMP domain Thivi_1222 PF02203 Tar ligand binding domain homologue Thivi_1222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_1223 PF01584 CheW-like domain Thivi_1224 PF01627 Hpt domain Thivi_1224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1224 PF02895 Signal transducing histidine kinase, homodimeric domain Thivi_1224 PF01584 CheW-like domain Thivi_1224 PF09078 CheY binding Thivi_1225 PF00072 Response regulator receiver domain Thivi_1226 PF02559 CarD-like/TRCF domain Thivi_1226 PF17757 UvrB interaction domain Thivi_1226 PF00271 Helicase conserved C-terminal domain Thivi_1226 PF03461 TRCF domain Thivi_1226 PF00270 DEAD/DEAH box helicase Thivi_1247 PF01734 Patatin-like phospholipase Thivi_1250 PF00563 EAL domain Thivi_1250 PF08448 PAS fold Thivi_1250 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1250 PF08447 PAS fold Thivi_1253 PF02861 Clp amino terminal domain, pathogenicity island component Thivi_1253 PF17871 AAA lid domain Thivi_1253 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_1253 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_1253 PF07724 AAA domain (Cdc48 subfamily) Thivi_1255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_1255 PF03466 LysR substrate binding domain Thivi_1257 PF00563 EAL domain Thivi_1257 PF03707 Bacterial signalling protein N terminal repeat Thivi_1257 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1258 PF02913 FAD linked oxidases, C-terminal domain Thivi_1258 PF01565 FAD binding domain Thivi_1259 PF03707 Bacterial signalling protein N terminal repeat Thivi_1259 PF00563 EAL domain Thivi_1259 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1262 PF04055 Radical SAM superfamily Thivi_1262 PF16199 Radical_SAM C-terminal domain Thivi_1268 PF14403 Circularly permuted ATP-grasp type 2 Thivi_1274 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1274 PF00072 Response regulator receiver domain Thivi_1276 PF04349 Periplasmic glucan biosynthesis protein, MdoG Thivi_1280 PF04279 Intracellular septation protein A Thivi_1281 PF03795 YCII-related domain Thivi_1284 PF03264 NapC/NirT cytochrome c family, N-terminal region Thivi_1295 PF01797 Transposase IS200 like Thivi_1303 PF00374 Nickel-dependent hydrogenase Thivi_1306 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thivi_1306 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_1308 PF01609 Transposase DDE domain Thivi_1308 PF13808 DDE_Tnp_1-associated Thivi_1311 PF00152 tRNA synthetases class II (D, K and N) Thivi_1311 PF01336 OB-fold nucleic acid binding domain Thivi_1313 PF00563 EAL domain Thivi_1313 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1313 PF03707 Bacterial signalling protein N terminal repeat Thivi_1315 PF00072 Response regulator receiver domain Thivi_1315 PF00672 HAMP domain Thivi_1315 PF17149 Periplasmic sensor domain found in signal transduction proteins Thivi_1315 PF01627 Hpt domain Thivi_1315 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1317 PF07715 TonB-dependent Receptor Plug Domain Thivi_1317 PF00593 TonB dependent receptor Thivi_1318 PF08668 HDOD domain Thivi_1318 PF00563 EAL domain Thivi_1319 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1319 PF01627 Hpt domain Thivi_1319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1319 PF00672 HAMP domain Thivi_1319 PF00072 Response regulator receiver domain Thivi_1319 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1320 PF00672 HAMP domain Thivi_1320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1320 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1320 PF00072 Response regulator receiver domain Thivi_1320 PF01627 Hpt domain Thivi_1321 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1321 PF03707 Bacterial signalling protein N terminal repeat Thivi_1321 PF00563 EAL domain Thivi_1323 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1323 PF08448 PAS fold Thivi_1323 PF00563 EAL domain Thivi_1324 PF03423 Carbohydrate binding domain (family 25) Thivi_1324 PF00128 Alpha amylase, catalytic domain Thivi_1324 PF01373 Glycosyl hydrolase family 14 Thivi_1325 PF08496 Peptidase family S49 N-terminal Thivi_1325 PF01343 Peptidase family S49 Thivi_1326 PF01641 SelR domain Thivi_1328 PF02666 Phosphatidylserine decarboxylase Thivi_1329 PF04055 Radical SAM superfamily Thivi_1329 PF06463 Molybdenum Cofactor Synthesis C Thivi_1331 PF00072 Response regulator receiver domain Thivi_1337 PF13416 Bacterial extracellular solute-binding protein Thivi_1339 PF00005 ABC transporter Thivi_1339 PF17845 FbpC C-terminal regulatory nucleotide binding domain Thivi_1340 PF02796 Helix-turn-helix domain of resolvase Thivi_1340 PF00239 Resolvase, N terminal domain Thivi_1355 PF01594 AI-2E family transporter Thivi_1357 PF02233 NAD(P) transhydrogenase beta subunit Thivi_1358 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Thivi_1359 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thivi_1359 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thivi_1360 PF03618 Kinase/pyrophosphorylase Thivi_1361 PF03441 FAD binding domain of DNA photolyase Thivi_1361 PF00875 DNA photolyase Thivi_1363 PF03707 Bacterial signalling protein N terminal repeat Thivi_1363 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1363 PF00563 EAL domain Thivi_1364 PF02673 Bacitracin resistance protein BacA Thivi_1365 PF03692 Putative zinc- or iron-chelating domain Thivi_1367 PF00999 Sodium/hydrogen exchanger family Thivi_1368 PF12849 PBP superfamily domain Thivi_1372 PF02253 Phospholipase A1 Thivi_1378 PF00361 Proton-conducting membrane transporter Thivi_1379 PF00486 Transcriptional regulatory protein, C terminal Thivi_1379 PF18500 CadC C-terminal domain 1 Thivi_1383 PF00563 EAL domain Thivi_1383 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1383 PF08448 PAS fold Thivi_1388 PF14863 Alkyl sulfatase dimerisation Thivi_1388 PF00753 Metallo-beta-lactamase superfamily Thivi_1388 PF14864 Alkyl sulfatase C-terminal Thivi_1391 PF13520 Amino acid permease Thivi_1396 PF00529 HlyD membrane-fusion protein of T1SS Thivi_1396 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thivi_1397 PF00873 AcrB/AcrD/AcrF family Thivi_1399 PF01594 AI-2E family transporter Thivi_1401 PF03616 Sodium/glutamate symporter Thivi_1403 PF04960 Glutaminase Thivi_1404 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_1404 PF03466 LysR substrate binding domain Thivi_1405 PF00258 Flavodoxin Thivi_1405 PF00667 FAD binding domain Thivi_1405 PF00175 Oxidoreductase NAD-binding domain Thivi_1406 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thivi_1406 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thivi_1407 PF01507 Phosphoadenosine phosphosulfate reductase family Thivi_1409 PF01565 FAD binding domain Thivi_1409 PF08031 Berberine and berberine like Thivi_1411 PF17243 POTRA domain TamA domain 1 Thivi_1411 PF01103 Surface antigen Thivi_1413 PF00266 Aminotransferase class-V Thivi_1415 PF13411 MerR HTH family regulatory protein Thivi_1418 PF01609 Transposase DDE domain Thivi_1418 PF13808 DDE_Tnp_1-associated Thivi_1421 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thivi_1421 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thivi_1422 PF00011 Hsp20/alpha crystallin family Thivi_1436 PF07715 TonB-dependent Receptor Plug Domain Thivi_1436 PF00593 TonB dependent receptor Thivi_1437 PF00672 HAMP domain Thivi_1437 PF17149 Periplasmic sensor domain found in signal transduction proteins Thivi_1437 PF01627 Hpt domain Thivi_1437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1437 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1437 PF00072 Response regulator receiver domain Thivi_1440 PF00072 Response regulator receiver domain Thivi_1440 PF00196 Bacterial regulatory proteins, luxR family Thivi_1451 PF06122 Conjugative relaxosome accessory transposon protein Thivi_1460 PF13808 DDE_Tnp_1-associated Thivi_1460 PF01609 Transposase DDE domain Thivi_1464 PF00258 Flavodoxin Thivi_1474 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Thivi_1474 PF17191 RecG wedge domain Thivi_1474 PF00270 DEAD/DEAH box helicase Thivi_1487 PF08406 CbbQ/NirQ/NorQ C-terminal Thivi_1487 PF07728 AAA domain (dynein-related subfamily) Thivi_1487 PF12556 Cobaltochelatase CobS subunit N terminal Thivi_1490 PF00436 Single-strand binding protein family Thivi_1496 PF00905 Penicillin binding protein transpeptidase domain Thivi_1498 PF06834 TraU protein Thivi_1500 PF10502 Signal peptidase, peptidase S26 Thivi_1506 PF00183 Hsp90 protein Thivi_1513 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Thivi_1523 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thivi_1523 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thivi_1542 PF18766 SWI2/SNF2 ATPase Thivi_1542 PF11867 Domain of unknown function (DUF3387) Thivi_1542 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Thivi_1547 PF12161 HsdM N-terminal domain Thivi_1547 PF02384 N-6 DNA Methylase Thivi_1552 PF08401 Domain of unknown function (DUF1738) Thivi_1552 PF18818 Metallopeptidase superfamily domain Thivi_1552 PF13362 Toprim domain Thivi_1558 PF13411 MerR HTH family regulatory protein Thivi_1559 PF00216 Bacterial DNA-binding protein Thivi_1560 PF03483 B3/4 domain Thivi_1560 PF01588 Putative tRNA binding domain Thivi_1560 PF03147 Ferredoxin-fold anticodon binding domain Thivi_1560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thivi_1560 PF03484 tRNA synthetase B5 domain Thivi_1561 PF01409 tRNA synthetases class II core domain (F) Thivi_1561 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Thivi_1562 PF00453 Ribosomal protein L20 Thivi_1563 PF01632 Ribosomal protein L35 Thivi_1564 PF05198 Translation initiation factor IF-3, N-terminal domain Thivi_1564 PF00707 Translation initiation factor IF-3, C-terminal domain Thivi_1565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thivi_1565 PF03129 Anticodon binding domain Thivi_1565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thivi_1565 PF02824 TGS domain Thivi_1567 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thivi_1567 PF00753 Metallo-beta-lactamase superfamily Thivi_1568 PF02779 Transketolase, pyrimidine binding domain Thivi_1568 PF02780 Transketolase, C-terminal domain Thivi_1568 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thivi_1569 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_1569 PF03466 LysR substrate binding domain Thivi_1570 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Thivi_1570 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thivi_1571 PF00101 Ribulose bisphosphate carboxylase, small chain Thivi_1572 PF07728 AAA domain (dynein-related subfamily) Thivi_1572 PF08406 CbbQ/NirQ/NorQ C-terminal Thivi_1574 PF00092 von Willebrand factor type A domain Thivi_1575 PF17864 RuvB AAA lid domain Thivi_1575 PF05491 RuvB C-terminal winged helix domain Thivi_1575 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thivi_1576 PF01565 FAD binding domain Thivi_1576 PF02913 FAD linked oxidases, C-terminal domain Thivi_1598 PF06122 Conjugative relaxosome accessory transposon protein Thivi_1600 PF01476 LysM domain Thivi_1600 PF01551 Peptidase family M23 Thivi_1600 PF08525 Opacity-associated protein A N-terminal motif Thivi_1604 PF00072 Response regulator receiver domain Thivi_1604 PF00196 Bacterial regulatory proteins, luxR family Thivi_1610 PF07728 AAA domain (dynein-related subfamily) Thivi_1610 PF08406 CbbQ/NirQ/NorQ C-terminal Thivi_1610 PF12556 Cobaltochelatase CobS subunit N terminal Thivi_1612 PF01527 Transposase Thivi_1616 PF02796 Helix-turn-helix domain of resolvase Thivi_1616 PF00239 Resolvase, N terminal domain Thivi_1624 PF00762 Ferrochelatase Thivi_1630 PF02421 Ferrous iron transport protein B Thivi_1630 PF17910 FeoB cytosolic helical domain Thivi_1630 PF07670 Nucleoside recognition Thivi_1630 PF07664 Ferrous iron transport protein B C terminus Thivi_1636 PF13411 MerR HTH family regulatory protein Thivi_1637 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_1640 PF01609 Transposase DDE domain Thivi_1640 PF13808 DDE_Tnp_1-associated Thivi_1645 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_1646 PF02742 Iron dependent repressor, metal binding and dimerisation domain Thivi_1646 PF18357 Diphteria toxin repressor SH3 domain Thivi_1646 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thivi_1656 PF03193 RsgA GTPase Thivi_1658 PF13808 DDE_Tnp_1-associated Thivi_1658 PF01609 Transposase DDE domain Thivi_1660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thivi_1666 PF01022 Bacterial regulatory protein, arsR family Thivi_1667 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thivi_1668 PF01758 Sodium Bile acid symporter family Thivi_1669 PF04204 Homoserine O-succinyltransferase Thivi_1672 PF02277 Phosphoribosyltransferase Thivi_1675 PF03186 CobD/Cbib protein Thivi_1677 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thivi_1680 PF02571 Precorrin-6x reductase CbiJ/CobK Thivi_1681 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thivi_1682 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thivi_1683 PF02570 Precorrin-8X methylmutase Thivi_1684 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thivi_1685 PF03466 LysR substrate binding domain Thivi_1685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_1686 PF08267 Cobalamin-independent synthase, N-terminal domain Thivi_1686 PF01717 Cobalamin-independent synthase, Catalytic domain Thivi_1690 PF05973 Phage derived protein Gp49-like (DUF891) Thivi_1692 PF01810 LysE type translocator Thivi_1696 PF02677 Epoxyqueuosine reductase QueH Thivi_1697 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thivi_1697 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thivi_1700 PF00005 ABC transporter Thivi_1701 PF01032 FecCD transport family Thivi_1704 PF02310 B12 binding domain Thivi_1704 PF02607 B12 binding domain Thivi_1704 PF02574 Homocysteine S-methyltransferase Thivi_1704 PF02965 Vitamin B12 dependent methionine synthase, activation domain Thivi_1704 PF00809 Pterin binding enzyme Thivi_1708 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thivi_1708 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thivi_1709 PF04055 Radical SAM superfamily Thivi_1709 PF02310 B12 binding domain Thivi_1716 PF04358 DsrC like protein Thivi_1717 PF03466 LysR substrate binding domain Thivi_1717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_1718 PF00072 Response regulator receiver domain Thivi_1718 PF00486 Transcriptional regulatory protein, C terminal Thivi_1719 PF00072 Response regulator receiver domain Thivi_1720 PF00672 HAMP domain Thivi_1720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1720 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1720 PF01627 Hpt domain Thivi_1720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1720 PF00072 Response regulator receiver domain Thivi_1722 PF00571 CBS domain Thivi_1722 PF00478 IMP dehydrogenase / GMP reductase domain Thivi_1723 PF00313 'Cold-shock' DNA-binding domain Thivi_1724 PF00005 ABC transporter Thivi_1724 PF12848 ABC transporter Thivi_1725 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thivi_1725 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thivi_1725 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_1729 PF00141 Peroxidase Thivi_1730 PF03109 ABC1 family Thivi_1732 PF01209 ubiE/COQ5 methyltransferase family Thivi_1735 PF07724 AAA domain (Cdc48 subfamily) Thivi_1735 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_1735 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_1736 PF00227 Proteasome subunit Thivi_1738 PF01850 PIN domain Thivi_1740 PF00733 Asparagine synthase Thivi_1740 PF13537 Glutamine amidotransferase domain Thivi_1743 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1743 PF00672 HAMP domain Thivi_1743 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1743 PF00072 Response regulator receiver domain Thivi_1743 PF01627 Hpt domain Thivi_1743 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1747 PF00999 Sodium/hydrogen exchanger family Thivi_1747 PF02254 TrkA-N domain Thivi_1749 PF00128 Alpha amylase, catalytic domain Thivi_1749 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thivi_1750 PF12832 MFS_1 like family Thivi_1751 PF01264 Chorismate synthase Thivi_1752 PF02321 Outer membrane efflux protein Thivi_1753 PF00561 alpha/beta hydrolase fold Thivi_1754 PF00194 Eukaryotic-type carbonic anhydrase Thivi_1755 PF12804 MobA-like NTP transferase domain Thivi_1756 PF00011 Hsp20/alpha crystallin family Thivi_1757 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1757 PF00563 EAL domain Thivi_1757 PF03707 Bacterial signalling protein N terminal repeat Thivi_1758 PF14403 Circularly permuted ATP-grasp type 2 Thivi_1758 PF04168 A predicted alpha-helical domain with a conserved ER motif. Thivi_1761 PF00156 Phosphoribosyl transferase domain Thivi_1762 PF04055 Radical SAM superfamily Thivi_1762 PF06968 Biotin and Thiamin Synthesis associated domain Thivi_1763 PF00155 Aminotransferase class I and II Thivi_1764 PF00561 alpha/beta hydrolase fold Thivi_1765 PF08241 Methyltransferase domain Thivi_1768 PF01272 Transcription elongation factor, GreA/GreB, C-term Thivi_1768 PF03449 Transcription elongation factor, N-terminal Thivi_1769 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thivi_1769 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thivi_1769 PF02142 MGS-like domain Thivi_1770 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thivi_1770 PF00117 Glutamine amidotransferase class-I Thivi_1771 PF13193 AMP-binding enzyme C-terminal domain Thivi_1771 PF00501 AMP-binding enzyme Thivi_1778 PF01991 ATP synthase (E/31 kDa) subunit Thivi_1779 PF16886 ATPsynthase alpha/beta subunit N-term extension Thivi_1779 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thivi_1779 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_1786 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_1788 PF01813 ATP synthase subunit D Thivi_1789 PF00117 Glutamine amidotransferase class-I Thivi_1791 PF00691 OmpA family Thivi_1792 PF04052 TolB amino-terminal domain Thivi_1792 PF07676 WD40-like Beta Propeller Repeat Thivi_1794 PF02472 Biopolymer transport protein ExbD/TolR Thivi_1795 PF01618 MotA/TolQ/ExbB proton channel family Thivi_1796 PF03061 Thioesterase superfamily Thivi_1799 PF00501 AMP-binding enzyme Thivi_1803 PF00210 Ferritin-like domain Thivi_1804 PF14489 QueF-like protein Thivi_1805 PF00883 Cytosol aminopeptidase family, catalytic domain Thivi_1805 PF02789 Cytosol aminopeptidase family, N-terminal domain Thivi_1806 PF03739 Lipopolysaccharide export system permease LptF/LptG Thivi_1807 PF00899 ThiF family Thivi_1808 PF01026 TatD related DNase Thivi_1810 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Thivi_1812 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thivi_1812 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thivi_1812 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_1815 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thivi_1815 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_1815 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thivi_1820 PF00005 ABC transporter Thivi_1824 PF00753 Metallo-beta-lactamase superfamily Thivi_1825 PF03030 Inorganic H+ pyrophosphatase Thivi_1826 PF02424 ApbE family Thivi_1830 PF03707 Bacterial signalling protein N terminal repeat Thivi_1830 PF00990 Diguanylate cyclase, GGDEF domain Thivi_1830 PF00563 EAL domain Thivi_1831 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1831 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1831 PF01627 Hpt domain Thivi_1831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1831 PF00072 Response regulator receiver domain Thivi_1831 PF00672 HAMP domain Thivi_1832 PF01207 Dihydrouridine synthase (Dus) Thivi_1837 PF12441 CopG antitoxin of type II toxin-antitoxin system Thivi_1838 PF01571 Aminomethyltransferase folate-binding domain Thivi_1838 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thivi_1839 PF01597 Glycine cleavage H-protein Thivi_1840 PF02347 Glycine cleavage system P-protein Thivi_1841 PF08534 Redoxin Thivi_1842 PF02347 Glycine cleavage system P-protein Thivi_1843 PF01219 Prokaryotic diacylglycerol kinase Thivi_1844 PF02342 TerD domain Thivi_1845 PF17863 AAA lid domain Thivi_1846 PF17863 AAA lid domain Thivi_1846 PF01078 Magnesium chelatase, subunit ChlI Thivi_1847 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Thivi_1847 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Thivi_1848 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Thivi_1850 PF03471 Transporter associated domain Thivi_1850 PF00571 CBS domain Thivi_1851 PF02130 Uncharacterized protein family UPF0054 Thivi_1852 PF02562 PhoH-like protein Thivi_1853 PF00919 Uncharacterized protein family UPF0004 Thivi_1853 PF01938 TRAM domain Thivi_1853 PF04055 Radical SAM superfamily Thivi_1858 PF03330 Lytic transglycolase Thivi_1859 PF04333 MlaA lipoprotein Thivi_1863 PF00989 PAS fold Thivi_1863 PF00072 Response regulator receiver domain Thivi_1863 PF18415 Histidine kinase receptor ArcB trans-membrane domain Thivi_1863 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1863 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1863 PF01627 Hpt domain Thivi_1865 PF00929 Exonuclease Thivi_1866 PF00462 Glutaredoxin Thivi_1867 PF13537 Glutamine amidotransferase domain Thivi_1867 PF00733 Asparagine synthase Thivi_1868 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Thivi_1868 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Thivi_1869 PF00202 Aminotransferase class-III Thivi_1870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thivi_1870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thivi_1874 PF07703 Alpha-2-macroglobulin bait region domain Thivi_1874 PF07678 A-macroglobulin TED domain Thivi_1874 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Thivi_1874 PF01835 MG2 domain Thivi_1874 PF17962 Bacterial macroglobulin domain 6 Thivi_1874 PF00207 Alpha-2-macroglobulin family Thivi_1874 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Thivi_1874 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Thivi_1874 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Thivi_1878 PF00474 Sodium:solute symporter family Thivi_1892 PF00694 Aconitase C-terminal domain Thivi_1892 PF00330 Aconitase family (aconitate hydratase) Thivi_1893 PF08328 Adenylosuccinate lyase C-terminal Thivi_1893 PF00206 Lyase Thivi_1894 PF01389 OmpA-like transmembrane domain Thivi_1894 PF00691 OmpA family Thivi_1898 PF00873 AcrB/AcrD/AcrF family Thivi_1899 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thivi_1899 PF00529 HlyD membrane-fusion protein of T1SS Thivi_1901 PF02872 5'-nucleotidase, C-terminal domain Thivi_1903 PF00391 PEP-utilising enzyme, mobile domain Thivi_1903 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thivi_1903 PF02896 PEP-utilising enzyme, TIM barrel domain Thivi_1904 PF13462 Thioredoxin Thivi_1905 PF00920 Dehydratase family Thivi_1914 PF00902 Sec-independent protein translocase protein (TatC) Thivi_1916 PF03411 Penicillin-insensitive murein endopeptidase Thivi_1917 PF02978 Signal peptide binding domain Thivi_1917 PF00448 SRP54-type protein, GTPase domain Thivi_1917 PF02881 SRP54-type protein, helical bundle domain Thivi_1918 PF01578 Cytochrome C assembly protein Thivi_1920 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Thivi_1921 PF00595 PDZ domain Thivi_1921 PF13180 PDZ domain Thivi_1922 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thivi_1925 PF00485 Phosphoribulokinase / Uridine kinase family Thivi_1926 PF00072 Response regulator receiver domain Thivi_1926 PF01627 Hpt domain Thivi_1926 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_1926 PF00512 His Kinase A (phospho-acceptor) domain Thivi_1926 PF00672 HAMP domain Thivi_1926 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_1928 PF01380 SIS domain Thivi_1930 PF02508 Rnf-Nqr subunit, membrane protein Thivi_1931 PF04060 Putative Fe-S cluster Thivi_1932 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thivi_1932 PF12838 4Fe-4S dicluster domain Thivi_1932 PF13375 RnfC Barrel sandwich hybrid domain Thivi_1932 PF10531 SLBB domain Thivi_1934 PF03116 NQR2, RnfD, RnfE family Thivi_1935 PF04205 FMN-binding domain Thivi_1936 PF02508 Rnf-Nqr subunit, membrane protein Thivi_1937 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thivi_1937 PF00529 HlyD membrane-fusion protein of T1SS Thivi_1938 PF01541 GIY-YIG catalytic domain Thivi_1940 PF00664 ABC transporter transmembrane region Thivi_1940 PF00005 ABC transporter Thivi_1955 PF00043 Glutathione S-transferase, C-terminal domain Thivi_1955 PF13417 Glutathione S-transferase, N-terminal domain Thivi_1956 PF01614 Bacterial transcriptional regulator Thivi_1956 PF09339 IclR helix-turn-helix domain Thivi_1961 PF02421 Ferrous iron transport protein B Thivi_1961 PF07670 Nucleoside recognition Thivi_1961 PF17910 FeoB cytosolic helical domain Thivi_1961 PF07664 Ferrous iron transport protein B C terminus Thivi_1963 PF00005 ABC transporter Thivi_1969 PF01184 GPR1/FUN34/yaaH family Thivi_1972 PF03372 Endonuclease/Exonuclease/phosphatase family Thivi_1973 PF01740 STAS domain Thivi_1973 PF00916 Sulfate permease family Thivi_1974 PF00483 Nucleotidyl transferase Thivi_1978 PF03209 PUCC protein Thivi_1980 PF00556 Antenna complex alpha/beta subunit Thivi_1981 PF00556 Antenna complex alpha/beta subunit Thivi_1983 PF00556 Antenna complex alpha/beta subunit Thivi_1984 PF00556 Antenna complex alpha/beta subunit Thivi_1985 PF00556 Antenna complex alpha/beta subunit Thivi_1987 PF00556 Antenna complex alpha/beta subunit Thivi_1990 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Thivi_1990 PF04055 Radical SAM superfamily Thivi_1991 PF00293 NUDIX domain Thivi_1992 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thivi_1994 PF00556 Antenna complex alpha/beta subunit Thivi_1995 PF00556 Antenna complex alpha/beta subunit Thivi_1996 PF00556 Antenna complex alpha/beta subunit Thivi_1997 PF00556 Antenna complex alpha/beta subunit Thivi_1998 PF02276 Photosynthetic reaction centre cytochrome C subunit Thivi_1999 PF00124 Photosynthetic reaction centre protein Thivi_2000 PF00124 Photosynthetic reaction centre protein Thivi_2001 PF00556 Antenna complex alpha/beta subunit Thivi_2002 PF00556 Antenna complex alpha/beta subunit Thivi_2003 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_2003 PF08369 Proto-chlorophyllide reductase 57 kD subunit Thivi_2010 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_2011 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thivi_2013 PF16864 Dimerisation domain Thivi_2013 PF00891 O-methyltransferase domain Thivi_2014 PF00348 Polyprenyl synthetase Thivi_2015 PF01593 Flavin containing amine oxidoreductase Thivi_2019 PF00106 short chain dehydrogenase Thivi_2020 PF08241 Methyltransferase domain Thivi_2022 PF03109 ABC1 family Thivi_2023 PF03033 Glycosyltransferase family 28 N-terminal domain Thivi_2023 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Thivi_2025 PF01593 Flavin containing amine oxidoreductase Thivi_2026 PF03747 ADP-ribosylglycohydrolase Thivi_2027 PF13538 UvrD-like helicase C-terminal domain Thivi_2028 PF13361 UvrD-like helicase C-terminal domain Thivi_2028 PF00580 UvrD/REP helicase N-terminal domain Thivi_2028 PF12705 PD-(D/E)XK nuclease superfamily Thivi_2029 PF17946 RecC C-terminal domain Thivi_2030 PF08011 PD-(D/E)XK nuclease superfamily Thivi_2030 PF09820 Predicted AAA-ATPase Thivi_2031 PF00270 DEAD/DEAH box helicase Thivi_2031 PF00271 Helicase conserved C-terminal domain Thivi_2032 PF13847 Methyltransferase domain Thivi_2038 PF16697 Inner membrane component of T3SS, cytoplasmic domain Thivi_2047 PF13808 DDE_Tnp_1-associated Thivi_2047 PF01609 Transposase DDE domain Thivi_2049 PF03793 PASTA domain Thivi_2049 PF00069 Protein kinase domain Thivi_2063 PF13519 von Willebrand factor type A domain Thivi_2063 PF07584 Aerotolerance regulator N-terminal Thivi_2064 PF00092 von Willebrand factor type A domain Thivi_2066 PF01882 Protein of unknown function DUF58 Thivi_2069 PF17863 AAA lid domain Thivi_2069 PF07726 ATPase family associated with various cellular activities (AAA) Thivi_2071 PF00561 alpha/beta hydrolase fold Thivi_2072 PF02580 D-Tyr-tRNA(Tyr) deacylase Thivi_2079 PF01406 tRNA synthetases class I (C) catalytic domain Thivi_2079 PF09190 DALR domain Thivi_2080 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thivi_2081 PF01730 UreF Thivi_2082 PF05194 UreE urease accessory protein, C-terminal domain Thivi_2082 PF02814 UreE urease accessory protein, N-terminal domain Thivi_2083 PF01979 Amidohydrolase family Thivi_2083 PF00449 Urease alpha-subunit, N-terminal domain Thivi_2084 PF00699 Urease beta subunit Thivi_2085 PF00547 Urease, gamma subunit Thivi_2086 PF01774 UreD urease accessory protein Thivi_2087 PF00005 ABC transporter Thivi_2089 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thivi_2089 PF00005 ABC transporter Thivi_2091 PF02653 Branched-chain amino acid transport system / permease component Thivi_2093 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Thivi_2094 PF00294 pfkB family carbohydrate kinase Thivi_2094 PF01467 Cytidylyltransferase-like Thivi_2100 PF17200 Single Cache domain 2 Thivi_2100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_2100 PF00672 HAMP domain Thivi_2101 PF00294 pfkB family carbohydrate kinase Thivi_2101 PF01467 Cytidylyltransferase-like Thivi_2102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_2102 PF00672 HAMP domain Thivi_2103 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Thivi_2107 PF00072 Response regulator receiver domain Thivi_2107 PF00486 Transcriptional regulatory protein, C terminal Thivi_2108 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2108 PF00672 HAMP domain Thivi_2108 PF18698 Histidine kinase sensor domain Thivi_2108 PF00989 PAS fold Thivi_2108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2110 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2110 PF08446 PAS fold Thivi_2110 PF01590 GAF domain Thivi_2110 PF00360 Phytochrome region Thivi_2111 PF03707 Bacterial signalling protein N terminal repeat Thivi_2111 PF00563 EAL domain Thivi_2111 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2113 PF00343 Carbohydrate phosphorylase Thivi_2114 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Thivi_2114 PF09364 XFP N-terminal domain Thivi_2114 PF09363 XFP C-terminal domain Thivi_2115 PF05685 Putative restriction endonuclease Thivi_2116 PF00570 HRDC domain Thivi_2116 PF16124 RecQ zinc-binding Thivi_2116 PF00270 DEAD/DEAH box helicase Thivi_2116 PF00271 Helicase conserved C-terminal domain Thivi_2116 PF09382 RQC domain Thivi_2120 PF00521 DNA gyrase/topoisomerase IV, subunit A Thivi_2120 PF03989 DNA gyrase C-terminal domain, beta-propeller Thivi_2121 PF00266 Aminotransferase class-V Thivi_2122 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thivi_2122 PF01842 ACT domain Thivi_2122 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thivi_2123 PF01817 Chorismate mutase type II Thivi_2123 PF01842 ACT domain Thivi_2123 PF00800 Prephenate dehydratase Thivi_2124 PF00155 Aminotransferase class I and II Thivi_2125 PF02153 Prephenate dehydrogenase Thivi_2126 PF01895 PhoU domain Thivi_2127 PF02579 Dinitrogenase iron-molybdenum cofactor Thivi_2127 PF04055 Radical SAM superfamily Thivi_2128 PF12838 4Fe-4S dicluster domain Thivi_2129 PF03960 ArsC family Thivi_2130 PF00753 Metallo-beta-lactamase superfamily Thivi_2130 PF00258 Flavodoxin Thivi_2131 PF00111 2Fe-2S iron-sulfur cluster binding domain Thivi_2132 PF00111 2Fe-2S iron-sulfur cluster binding domain Thivi_2133 PF04891 NifQ Thivi_2134 PF03747 ADP-ribosylglycohydrolase Thivi_2141 PF05567 Neisseria PilC beta-propeller domain Thivi_2142 PF07963 Prokaryotic N-terminal methylation motif Thivi_2142 PF00114 Pilin (bacterial filament) Thivi_2146 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thivi_2146 PF00205 Thiamine pyrophosphate enzyme, central domain Thivi_2146 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thivi_2148 PF00360 Phytochrome region Thivi_2148 PF08446 PAS fold Thivi_2148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2148 PF01590 GAF domain Thivi_2148 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2149 PF00072 Response regulator receiver domain Thivi_2150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2150 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2150 PF09308 LuxQ, periplasmic Thivi_2150 PF00072 Response regulator receiver domain Thivi_2151 PF01274 Malate synthase Thivi_2153 PF01594 AI-2E family transporter Thivi_2155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_2155 PF03466 LysR substrate binding domain Thivi_2157 PF08274 PhnA Zinc-Ribbon Thivi_2157 PF03831 PhnA domain Thivi_2159 PF13686 DsrE/DsrF/DrsH-like family Thivi_2160 PF01206 Sulfurtransferase TusA Thivi_2161 PF00581 Rhodanese-like domain Thivi_2162 PF14824 Sirohaem biosynthesis protein central Thivi_2162 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thivi_2162 PF10414 Sirohaem synthase dimerisation region Thivi_2163 PF01464 Transglycosylase SLT domain Thivi_2164 PF02342 TerD domain Thivi_2166 PF02342 TerD domain Thivi_2169 PF02342 TerD domain Thivi_2170 PF02342 TerD domain Thivi_2173 PF15608 PELOTA RNA binding domain Thivi_2173 PF11202 Phosphoribosyl transferase (PRTase) Thivi_2177 PF01370 NAD dependent epimerase/dehydratase family Thivi_2178 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thivi_2178 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thivi_2178 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thivi_2179 PF04972 BON domain Thivi_2179 PF01476 LysM domain Thivi_2184 PF01722 BolA-like protein Thivi_2186 PF16658 Class II release factor RF3, C-terminal domain Thivi_2186 PF00009 Elongation factor Tu GTP binding domain Thivi_2188 PF01343 Peptidase family S49 Thivi_2189 PF13419 Haloacid dehalogenase-like hydrolase Thivi_2190 PF00849 RNA pseudouridylate synthase Thivi_2190 PF01479 S4 domain Thivi_2191 PF00575 S1 RNA binding domain Thivi_2191 PF10150 Ribonuclease E/G family Thivi_2191 PF12111 Polyribonucleotide phosphorylase C terminal Thivi_2193 PF13439 Glycosyltransferase Family 4 Thivi_2193 PF00534 Glycosyl transferases group 1 Thivi_2195 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thivi_2201 PF00114 Pilin (bacterial filament) Thivi_2201 PF07963 Prokaryotic N-terminal methylation motif Thivi_2207 PF04055 Radical SAM superfamily Thivi_2207 PF08497 Radical SAM N-terminal Thivi_2207 PF11842 Domain of unknown function (DUF3362) Thivi_2208 PF01618 MotA/TolQ/ExbB proton channel family Thivi_2209 PF00691 OmpA family Thivi_2209 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thivi_2212 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_2212 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Thivi_2214 PF02080 TrkA-C domain Thivi_2214 PF18030 RimK PreATP-grasp domain Thivi_2214 PF08443 RimK-like ATP-grasp domain Thivi_2217 PF01546 Peptidase family M20/M25/M40 Thivi_2217 PF07687 Peptidase dimerisation domain Thivi_2218 PF04228 Putative neutral zinc metallopeptidase Thivi_2219 PF13396 Phospholipase_D-nuclease N-terminal Thivi_2219 PF13091 PLD-like domain Thivi_2221 PF14698 Argininosuccinate lyase C-terminal Thivi_2221 PF00206 Lyase Thivi_2222 PF04397 LytTr DNA-binding domain Thivi_2222 PF00072 Response regulator receiver domain Thivi_2227 PF00009 Elongation factor Tu GTP binding domain Thivi_2227 PF03764 Elongation factor G, domain IV Thivi_2227 PF03144 Elongation factor Tu domain 2 Thivi_2227 PF00679 Elongation factor G C-terminus Thivi_2227 PF14492 Elongation Factor G, domain II Thivi_2228 PF01161 Phosphatidylethanolamine-binding protein Thivi_2229 PF00571 CBS domain Thivi_2229 PF01380 SIS domain Thivi_2233 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thivi_2233 PF00005 ABC transporter Thivi_2234 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thivi_2234 PF04963 Sigma-54 factor, core binding domain Thivi_2234 PF04552 Sigma-54, DNA binding domain Thivi_2235 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thivi_2237 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thivi_2238 PF07475 HPr Serine kinase C-terminal domain Thivi_2238 PF02603 HPr Serine kinase N terminus Thivi_2239 PF03668 P-loop ATPase protein family Thivi_2241 PF00381 PTS HPr component phosphorylation site Thivi_2242 PF02896 PEP-utilising enzyme, TIM barrel domain Thivi_2242 PF05524 PEP-utilising enzyme, N-terminal Thivi_2242 PF00391 PEP-utilising enzyme, mobile domain Thivi_2243 PF03448 MgtE intracellular N domain Thivi_2243 PF01769 Divalent cation transporter Thivi_2243 PF00571 CBS domain Thivi_2249 PF00975 Thioesterase domain Thivi_2249 PF00550 Phosphopantetheine attachment site Thivi_2249 PF00668 Condensation domain Thivi_2249 PF00501 AMP-binding enzyme Thivi_2249 PF13193 AMP-binding enzyme C-terminal domain Thivi_2250 PF07977 FabA-like domain Thivi_2254 PF00109 Beta-ketoacyl synthase, N-terminal domain Thivi_2254 PF02801 Beta-ketoacyl synthase, C-terminal domain Thivi_2257 PF00535 Glycosyl transferase family 2 Thivi_2263 PF02601 Exonuclease VII, large subunit Thivi_2263 PF13742 OB-fold nucleic acid binding domain Thivi_2265 PF00571 CBS domain Thivi_2265 PF00478 IMP dehydrogenase / GMP reductase domain Thivi_2268 PF00117 Glutamine amidotransferase class-I Thivi_2268 PF02540 NAD synthase Thivi_2268 PF00958 GMP synthase C terminal domain Thivi_2274 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thivi_2275 PF14437 MafB19-like deaminase Thivi_2276 PF00268 Ribonucleotide reductase, small chain Thivi_2278 PF17961 Bacterial Ig domain Thivi_2278 PF04650 YSIRK type signal peptide Thivi_2278 PF00746 LPXTG cell wall anchor motif Thivi_2278 PF10425 C-terminus of bacterial fibrinogen-binding adhesin Thivi_2278 PF17210 SdrD B-like domain Thivi_2280 PF02080 TrkA-C domain Thivi_2280 PF00999 Sodium/hydrogen exchanger family Thivi_2280 PF03471 Transporter associated domain Thivi_2281 PF06865 Pyrimidine/purine nucleoside phosphorylase Thivi_2283 PF07724 AAA domain (Cdc48 subfamily) Thivi_2283 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_2283 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_2283 PF17871 AAA lid domain Thivi_2288 PF05638 Type VI secretion system effector, Hcp Thivi_2297 PF04717 Type VI secretion system, phage-baseplate injector Thivi_2301 PF00691 OmpA family Thivi_2301 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thivi_2307 PF00293 NUDIX domain Thivi_2308 PF01960 ArgJ family Thivi_2309 PF02810 SEC-C motif Thivi_2309 PF07517 SecA DEAD-like domain Thivi_2309 PF01043 SecA preprotein cross-linking domain Thivi_2309 PF07516 SecA Wing and Scaffold domain Thivi_2310 PF01551 Peptidase family M23 Thivi_2310 PF01476 LysM domain Thivi_2312 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Thivi_2313 PF00091 Tubulin/FtsZ family, GTPase domain Thivi_2313 PF12327 FtsZ family, C-terminal domain Thivi_2314 PF02491 SHS2 domain inserted in FTSA Thivi_2315 PF03799 Cell division protein FtsQ Thivi_2315 PF08478 POTRA domain, FtsQ-type Thivi_2316 PF07478 D-ala D-ala ligase C-terminus Thivi_2316 PF01820 D-ala D-ala ligase N-terminus Thivi_2317 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thivi_2317 PF01565 FAD binding domain Thivi_2318 PF01225 Mur ligase family, catalytic domain Thivi_2318 PF02875 Mur ligase family, glutamate ligase domain Thivi_2318 PF08245 Mur ligase middle domain Thivi_2319 PF03033 Glycosyltransferase family 28 N-terminal domain Thivi_2319 PF04101 Glycosyltransferase family 28 C-terminal domain Thivi_2320 PF01098 Cell cycle protein Thivi_2321 PF08245 Mur ligase middle domain Thivi_2321 PF02875 Mur ligase family, glutamate ligase domain Thivi_2322 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thivi_2322 PF00953 Glycosyl transferase family 4 Thivi_2323 PF08245 Mur ligase middle domain Thivi_2323 PF02875 Mur ligase family, glutamate ligase domain Thivi_2323 PF01225 Mur ligase family, catalytic domain Thivi_2324 PF03717 Penicillin-binding Protein dimerisation domain Thivi_2324 PF00905 Penicillin binding protein transpeptidase domain Thivi_2325 PF04999 Cell division protein FtsL Thivi_2326 PF01795 MraW methylase family Thivi_2327 PF02381 MraZ protein, putative antitoxin-like Thivi_2329 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thivi_2330 PF04348 LppC putative lipoprotein Thivi_2331 PF02021 Uncharacterised protein family UPF0102 Thivi_2332 PF04972 BON domain Thivi_2333 PF01565 FAD binding domain Thivi_2333 PF02913 FAD linked oxidases, C-terminal domain Thivi_2338 PF00563 EAL domain Thivi_2338 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2338 PF03707 Bacterial signalling protein N terminal repeat Thivi_2339 PF00072 Response regulator receiver domain Thivi_2339 PF00211 Adenylate and Guanylate cyclase catalytic domain Thivi_2340 PF08446 PAS fold Thivi_2340 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2340 PF00360 Phytochrome region Thivi_2340 PF01590 GAF domain Thivi_2340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2341 PF01116 Fructose-bisphosphate aldolase class-II Thivi_2343 PF00224 Pyruvate kinase, barrel domain Thivi_2343 PF02887 Pyruvate kinase, alpha/beta domain Thivi_2344 PF00162 Phosphoglycerate kinase Thivi_2347 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thivi_2347 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thivi_2348 PF00456 Transketolase, thiamine diphosphate binding domain Thivi_2348 PF02780 Transketolase, C-terminal domain Thivi_2348 PF02779 Transketolase, pyrimidine binding domain Thivi_2350 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thivi_2350 PF02772 S-adenosylmethionine synthetase, central domain Thivi_2350 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thivi_2355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_2355 PF00672 HAMP domain Thivi_2359 PF01590 GAF domain Thivi_2359 PF00360 Phytochrome region Thivi_2359 PF08446 PAS fold Thivi_2359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2359 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2360 PF13426 PAS domain Thivi_2360 PF13188 PAS domain Thivi_2360 PF02954 Bacterial regulatory protein, Fis family Thivi_2362 PF13356 Arm DNA-binding domain Thivi_2362 PF00589 Phage integrase family Thivi_2375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thivi_2378 PF00072 Response regulator receiver domain Thivi_2379 PF00072 Response regulator receiver domain Thivi_2379 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2379 PF01627 Hpt domain Thivi_2380 PF01590 GAF domain Thivi_2380 PF00360 Phytochrome region Thivi_2380 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2380 PF08446 PAS fold Thivi_2380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2382 PF07927 HicA toxin of bacterial toxin-antitoxin, Thivi_2386 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thivi_2386 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thivi_2388 PF01678 Diaminopimelate epimerase Thivi_2390 PF02899 Phage integrase, N-terminal SAM-like domain Thivi_2390 PF00589 Phage integrase family Thivi_2394 PF00501 AMP-binding enzyme Thivi_2394 PF14535 AMP-binding enzyme C-terminal domain Thivi_2396 PF14535 AMP-binding enzyme C-terminal domain Thivi_2396 PF00501 AMP-binding enzyme Thivi_2398 PF13193 AMP-binding enzyme C-terminal domain Thivi_2398 PF00501 AMP-binding enzyme Thivi_2399 PF02830 V4R domain Thivi_2400 PF06969 HemN C-terminal domain Thivi_2400 PF04055 Radical SAM superfamily Thivi_2401 PF02310 B12 binding domain Thivi_2401 PF04055 Radical SAM superfamily Thivi_2402 PF12291 Protein of unknown function (DUF3623) Thivi_2405 PF05239 PRC-barrel domain Thivi_2405 PF03967 Photosynthetic reaction centre, H-chain N-terminal region Thivi_2406 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus Thivi_2406 PF05175 Methyltransferase small domain Thivi_2407 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thivi_2408 PF02514 CobN/Magnesium Chelatase Thivi_2408 PF11965 Domain of unknown function (DUF3479) Thivi_2409 PF08369 Proto-chlorophyllide reductase 57 kD subunit Thivi_2409 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_2410 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_2411 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) Thivi_2412 PF13426 PAS domain Thivi_2412 PF13188 PAS domain Thivi_2412 PF02954 Bacterial regulatory protein, Fis family Thivi_2413 PF01040 UbiA prenyltransferase family Thivi_2415 PF00270 DEAD/DEAH box helicase Thivi_2415 PF08482 ATP-dependent helicase C-terminal Thivi_2415 PF04408 Helicase associated domain (HA2) Thivi_2415 PF00271 Helicase conserved C-terminal domain Thivi_2419 PF00391 PEP-utilising enzyme, mobile domain Thivi_2419 PF00224 Pyruvate kinase, barrel domain Thivi_2419 PF02887 Pyruvate kinase, alpha/beta domain Thivi_2423 PF01695 IstB-like ATP binding protein Thivi_2430 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Thivi_2430 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thivi_2434 PF00905 Penicillin binding protein transpeptidase domain Thivi_2435 PF13378 Enolase C-terminal domain-like Thivi_2437 PF00378 Enoyl-CoA hydratase/isomerase Thivi_2438 PF13401 AAA domain Thivi_2438 PF01471 Putative peptidoglycan binding domain Thivi_2440 PF03448 MgtE intracellular N domain Thivi_2440 PF01769 Divalent cation transporter Thivi_2440 PF00571 CBS domain Thivi_2441 PF00989 PAS fold Thivi_2441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2441 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2442 PF02954 Bacterial regulatory protein, Fis family Thivi_2442 PF00158 Sigma-54 interaction domain Thivi_2442 PF00072 Response regulator receiver domain Thivi_2443 PF17200 Single Cache domain 2 Thivi_2443 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_2443 PF00672 HAMP domain Thivi_2444 PF00563 EAL domain Thivi_2444 PF03707 Bacterial signalling protein N terminal repeat Thivi_2444 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2447 PF01434 Peptidase family M41 Thivi_2447 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_2447 PF17862 AAA+ lid domain Thivi_2447 PF06480 FtsH Extracellular Thivi_2449 PF03781 Sulfatase-modifying factor enzyme 1 Thivi_2452 PF03707 Bacterial signalling protein N terminal repeat Thivi_2452 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2452 PF00563 EAL domain Thivi_2453 PF01966 HD domain Thivi_2457 PF04012 PspA/IM30 family Thivi_2459 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Thivi_2459 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thivi_2460 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2464 PF00005 ABC transporter Thivi_2464 PF00664 ABC transporter transmembrane region Thivi_2465 PF00672 HAMP domain Thivi_2465 PF07730 Histidine kinase Thivi_2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2465 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Thivi_2466 PF00072 Response regulator receiver domain Thivi_2466 PF00196 Bacterial regulatory proteins, luxR family Thivi_2470 PF00436 Single-strand binding protein family Thivi_2471 PF07690 Major Facilitator Superfamily Thivi_2472 PF17760 UvrA interaction domain Thivi_2472 PF17755 UvrA DNA-binding domain Thivi_2472 PF00005 ABC transporter Thivi_2475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thivi_2475 PF17854 FtsK alpha domain Thivi_2475 PF01580 FtsK/SpoIIIE family Thivi_2475 PF09397 Ftsk gamma domain Thivi_2480 PF00534 Glycosyl transferases group 1 Thivi_2480 PF13439 Glycosyltransferase Family 4 Thivi_2481 PF13439 Glycosyltransferase Family 4 Thivi_2481 PF00534 Glycosyl transferases group 1 Thivi_2485 PF00114 Pilin (bacterial filament) Thivi_2485 PF07963 Prokaryotic N-terminal methylation motif Thivi_2490 PF13276 HTH-like domain Thivi_2490 PF00665 Integrase core domain Thivi_2490 PF13333 Integrase core domain Thivi_2493 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thivi_2497 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Thivi_2498 PF00682 HMGL-like Thivi_2498 PF02436 Conserved carboxylase domain Thivi_2498 PF00364 Biotin-requiring enzyme Thivi_2500 PF06832 Penicillin-Binding Protein C-terminus Family Thivi_2500 PF00912 Transglycosylase Thivi_2500 PF00905 Penicillin binding protein transpeptidase domain Thivi_2501 PF00593 TonB dependent receptor Thivi_2501 PF07715 TonB-dependent Receptor Plug Domain Thivi_2503 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2503 PF17151 Periplasmic sensor domain Thivi_2504 PF07497 Rho termination factor, RNA-binding domain Thivi_2504 PF07498 Rho termination factor, N-terminal domain Thivi_2504 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_2505 PF00085 Thioredoxin Thivi_2506 PF00271 Helicase conserved C-terminal domain Thivi_2506 PF12300 ATP-dependent RNA helicase RhlB Thivi_2506 PF00270 DEAD/DEAH box helicase Thivi_2507 PF13419 Haloacid dehalogenase-like hydrolase Thivi_2508 PF00293 NUDIX domain Thivi_2510 PF00390 Malic enzyme, N-terminal domain Thivi_2510 PF03949 Malic enzyme, NAD binding domain Thivi_2511 PF01595 Cyclin M transmembrane N-terminal domain Thivi_2511 PF00571 CBS domain Thivi_2511 PF03471 Transporter associated domain Thivi_2512 PF04381 Putative exonuclease, RdgC Thivi_2513 PF01370 NAD dependent epimerase/dehydratase family Thivi_2514 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thivi_2515 PF01297 Zinc-uptake complex component A periplasmic Thivi_2517 PF00005 ABC transporter Thivi_2518 PF01297 Zinc-uptake complex component A periplasmic Thivi_2521 PF03459 TOBE domain Thivi_2521 PF00005 ABC transporter Thivi_2522 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_2524 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_2524 PF03459 TOBE domain Thivi_2526 PF03459 TOBE domain Thivi_2526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_2527 PF02600 Disulfide bond formation protein DsbB Thivi_2529 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thivi_2530 PF04193 PQ loop repeat Thivi_2531 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Thivi_2532 PF01502 Phosphoribosyl-AMP cyclohydrolase Thivi_2533 PF00977 Histidine biosynthesis protein Thivi_2534 PF00475 Imidazoleglycerol-phosphate dehydratase Thivi_2535 PF00691 OmpA family Thivi_2538 PF00534 Glycosyl transferases group 1 Thivi_2538 PF13439 Glycosyltransferase Family 4 Thivi_2539 PF01515 Phosphate acetyl/butaryl transferase Thivi_2539 PF03949 Malic enzyme, NAD binding domain Thivi_2539 PF00390 Malic enzyme, N-terminal domain Thivi_2540 PF02080 TrkA-C domain Thivi_2540 PF02254 TrkA-N domain Thivi_2541 PF02386 Cation transport protein Thivi_2542 PF01472 PUA domain Thivi_2542 PF00696 Amino acid kinase family Thivi_2543 PF01926 50S ribosome-binding GTPase Thivi_2543 PF01018 GTP1/OBG Thivi_2544 PF01016 Ribosomal L27 protein Thivi_2545 PF00829 Ribosomal prokaryotic L21 protein Thivi_2546 PF00348 Polyprenyl synthetase Thivi_2549 PF00563 EAL domain Thivi_2549 PF03707 Bacterial signalling protein N terminal repeat Thivi_2549 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2552 PF00563 EAL domain Thivi_2552 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2552 PF03707 Bacterial signalling protein N terminal repeat Thivi_2556 PF06165 Glycosyltransferase family 36 Thivi_2556 PF10091 Putative glucoamylase Thivi_2556 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thivi_2557 PF04972 BON domain Thivi_2558 PF04972 BON domain Thivi_2566 PF00672 HAMP domain Thivi_2566 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_2566 PF17200 Single Cache domain 2 Thivi_2571 PF00085 Thioredoxin Thivi_2573 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2573 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_2573 PF00672 HAMP domain Thivi_2573 PF01627 Hpt domain Thivi_2573 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2573 PF00072 Response regulator receiver domain Thivi_2574 PF03707 Bacterial signalling protein N terminal repeat Thivi_2574 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2574 PF00563 EAL domain Thivi_2575 PF00072 Response regulator receiver domain Thivi_2575 PF09308 LuxQ, periplasmic Thivi_2575 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2576 PF03705 CheR methyltransferase, all-alpha domain Thivi_2576 PF01739 CheR methyltransferase, SAM binding domain Thivi_2576 PF08448 PAS fold Thivi_2576 PF01339 CheB methylesterase Thivi_2582 PF05036 Sporulation related domain Thivi_2582 PF03330 Lytic transglycolase Thivi_2585 PF00005 ABC transporter Thivi_2586 PF02597 ThiS family Thivi_2587 PF00994 Probable molybdopterin binding domain Thivi_2587 PF03453 MoeA N-terminal region (domain I and II) Thivi_2587 PF03454 MoeA C-terminal region (domain IV) Thivi_2588 PF00994 Probable molybdopterin binding domain Thivi_2589 PF12804 MobA-like NTP transferase domain Thivi_2589 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_2590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thivi_2591 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Thivi_2591 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Thivi_2592 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_2592 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thivi_2593 PF00231 ATP synthase Thivi_2594 PF00306 ATP synthase alpha/beta chain, C terminal domain Thivi_2594 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_2594 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thivi_2595 PF00213 ATP synthase delta (OSCP) subunit Thivi_2596 PF00430 ATP synthase B/B' CF(0) Thivi_2597 PF00137 ATP synthase subunit C Thivi_2598 PF00119 ATP synthase A chain Thivi_2600 PF17762 HTH domain found in ParB protein Thivi_2600 PF02195 ParB-like nuclease domain Thivi_2601 PF13614 AAA domain Thivi_2602 PF02527 rRNA small subunit methyltransferase G Thivi_2603 PF01134 Glucose inhibited division protein A Thivi_2603 PF13932 GidA associated domain Thivi_2604 PF17863 AAA lid domain Thivi_2604 PF07726 ATPase family associated with various cellular activities (AAA) Thivi_2605 PF00072 Response regulator receiver domain Thivi_2605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2605 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2605 PF09308 LuxQ, periplasmic Thivi_2607 PF00155 Aminotransferase class I and II Thivi_2609 PF14602 Hexapeptide repeat of succinyl-transferase Thivi_2609 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_2609 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Thivi_2610 PF03960 ArsC family Thivi_2611 PF07687 Peptidase dimerisation domain Thivi_2611 PF01546 Peptidase family M20/M25/M40 Thivi_2615 PF13580 SIS domain Thivi_2618 PF12344 Ultra-violet resistance protein B Thivi_2618 PF00271 Helicase conserved C-terminal domain Thivi_2618 PF17757 UvrB interaction domain Thivi_2618 PF04851 Type III restriction enzyme, res subunit Thivi_2618 PF02151 UvrB/uvrC motif Thivi_2622 PF00005 ABC transporter Thivi_2623 PF01061 ABC-2 type transporter Thivi_2628 PF01926 50S ribosome-binding GTPase Thivi_2628 PF06071 Protein of unknown function (DUF933) Thivi_2629 PF01050 Mannose-6-phosphate isomerase Thivi_2629 PF00483 Nucleotidyl transferase Thivi_2630 PF00459 Inositol monophosphatase family Thivi_2632 PF00534 Glycosyl transferases group 1 Thivi_2632 PF13439 Glycosyltransferase Family 4 Thivi_2656 PF00665 Integrase core domain Thivi_2656 PF13333 Integrase core domain Thivi_2656 PF13276 HTH-like domain Thivi_2666 PF00764 Arginosuccinate synthase Thivi_2667 PF18073 Rubredoxin metal binding domain Thivi_2678 PF00005 ABC transporter Thivi_2679 PF00535 Glycosyl transferase family 2 Thivi_2682 PF08241 Methyltransferase domain Thivi_2683 PF01757 Acyltransferase family Thivi_2684 PF00535 Glycosyl transferase family 2 Thivi_2685 PF00535 Glycosyl transferase family 2 Thivi_2686 PF11066 Protein of unknown function (DUF2867) Thivi_2686 PF13460 NAD(P)H-binding Thivi_2688 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thivi_2691 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thivi_2693 PF17944 Arginine decarboxylase C-terminal helical extension Thivi_2693 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thivi_2693 PF17810 Arginine decarboxylase helical bundle domain Thivi_2694 PF00230 Major intrinsic protein Thivi_2695 PF04358 DsrC like protein Thivi_2698 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thivi_2698 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_2701 PF00374 Nickel-dependent hydrogenase Thivi_2702 PF01098 Cell cycle protein Thivi_2703 PF00149 Calcineurin-like phosphoesterase Thivi_2705 PF07690 Major Facilitator Superfamily Thivi_2706 PF03707 Bacterial signalling protein N terminal repeat Thivi_2706 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2706 PF00563 EAL domain Thivi_2707 PF03776 Septum formation topological specificity factor MinE Thivi_2708 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thivi_2709 PF03775 Septum formation inhibitor MinC, C-terminal domain Thivi_2709 PF05209 Septum formation inhibitor MinC, N-terminal domain Thivi_2710 PF01230 HIT domain Thivi_2711 PF13662 Toprim domain Thivi_2711 PF02132 RecR protein Thivi_2712 PF02575 YbaB/EbfC DNA-binding family Thivi_2713 PF12170 DNA polymerase III tau subunit V interacting with alpha Thivi_2713 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Thivi_2713 PF12169 DNA polymerase III subunits gamma and tau domain III Thivi_2715 PF00696 Amino acid kinase family Thivi_2716 PF00313 'Cold-shock' DNA-binding domain Thivi_2717 PF00692 dUTPase Thivi_2718 PF04127 DNA / pantothenate metabolism flavoprotein Thivi_2718 PF02441 Flavoprotein Thivi_2719 PF04002 RadC-like JAB domain Thivi_2720 PF05872 Bacterial protein of unknown function (DUF853) Thivi_2722 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Thivi_2724 PF01926 50S ribosome-binding GTPase Thivi_2724 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thivi_2725 PF13360 PQQ-like domain Thivi_2726 PF09976 Tetratricopeptide repeat-like domain Thivi_2727 PF13393 Histidyl-tRNA synthetase Thivi_2727 PF03129 Anticodon binding domain Thivi_2730 PF04055 Radical SAM superfamily Thivi_2731 PF00334 Nucleoside diphosphate kinase Thivi_2734 PF12838 4Fe-4S dicluster domain Thivi_2736 PF03270 Protein of unknown function, DUF269 Thivi_2738 PF02579 Dinitrogenase iron-molybdenum cofactor Thivi_2739 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_2740 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_2741 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thivi_2741 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_2743 PF01842 ACT domain Thivi_2743 PF01909 Nucleotidyltransferase domain Thivi_2743 PF01966 HD domain Thivi_2743 PF08335 GlnD PII-uridylyltransferase Thivi_2744 PF00557 Metallopeptidase family M24 Thivi_2745 PF00318 Ribosomal protein S2 Thivi_2746 PF00889 Elongation factor TS Thivi_2747 PF00696 Amino acid kinase family Thivi_2748 PF01765 Ribosome recycling factor Thivi_2749 PF01255 Putative undecaprenyl diphosphate synthase Thivi_2751 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thivi_2751 PF13288 DXP reductoisomerase C-terminal domain Thivi_2751 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thivi_2752 PF02163 Peptidase family M50 Thivi_2752 PF13180 PDZ domain Thivi_2752 PF17820 PDZ domain Thivi_2753 PF01103 Surface antigen Thivi_2753 PF07244 Surface antigen variable number repeat Thivi_2755 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Thivi_2755 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_2756 PF07977 FabA-like domain Thivi_2757 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Thivi_2757 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_2758 PF02684 Lipid-A-disaccharide synthetase Thivi_2759 PF01351 Ribonuclease HII Thivi_2761 PF00437 Type II/IV secretion system protein Thivi_2765 PF00563 EAL domain Thivi_2765 PF03707 Bacterial signalling protein N terminal repeat Thivi_2765 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2766 PF00873 AcrB/AcrD/AcrF family Thivi_2767 PF13533 Biotin-lipoyl like Thivi_2769 PF01799 [2Fe-2S] binding domain Thivi_2769 PF00111 2Fe-2S iron-sulfur cluster binding domain Thivi_2770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Thivi_2772 PF00793 DAHP synthetase I family Thivi_2776 PF13085 2Fe-2S iron-sulfur cluster binding domain Thivi_2776 PF13183 4Fe-4S dicluster domain Thivi_2777 PF02910 Fumarate reductase flavoprotein C-term Thivi_2777 PF00890 FAD binding domain Thivi_2778 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Thivi_2780 PF02381 MraZ protein, putative antitoxin-like Thivi_2781 PF01636 Phosphotransferase enzyme family Thivi_2782 PF02719 Polysaccharide biosynthesis protein Thivi_2783 PF00953 Glycosyl transferase family 4 Thivi_2784 PF01965 DJ-1/PfpI family Thivi_2785 PF13180 PDZ domain Thivi_2785 PF03572 Peptidase family S41 Thivi_2786 PF01551 Peptidase family M23 Thivi_2789 PF02556 Preprotein translocase subunit SecB Thivi_2790 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thivi_2790 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thivi_2791 PF00588 SpoU rRNA Methylase family Thivi_2794 PF02954 Bacterial regulatory protein, Fis family Thivi_2794 PF00072 Response regulator receiver domain Thivi_2794 PF00158 Sigma-54 interaction domain Thivi_2795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2795 PF00512 His Kinase A (phospho-acceptor) domain Thivi_2795 PF00989 PAS fold Thivi_2797 PF03951 Glutamine synthetase, beta-Grasp domain Thivi_2797 PF00120 Glutamine synthetase, catalytic domain Thivi_2798 PF00873 AcrB/AcrD/AcrF family Thivi_2799 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thivi_2800 PF00005 ABC transporter Thivi_2800 PF00498 FHA domain Thivi_2800 PF01061 ABC-2 type transporter Thivi_2801 PF00873 AcrB/AcrD/AcrF family Thivi_2802 PF00529 HlyD membrane-fusion protein of T1SS Thivi_2802 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thivi_2803 PF07728 AAA domain (dynein-related subfamily) Thivi_2803 PF08406 CbbQ/NirQ/NorQ C-terminal Thivi_2806 PF00311 Phosphoenolpyruvate carboxylase Thivi_2810 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thivi_2812 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thivi_2821 PF00403 Heavy-metal-associated domain Thivi_2826 PF00994 Probable molybdopterin binding domain Thivi_2826 PF02464 Competence-damaged protein Thivi_2826 PF18146 Damage-inducible protein CinA KH domain Thivi_2828 PF00482 Type II secretion system (T2SS), protein F Thivi_2831 PF02092 Glycyl-tRNA synthetase beta subunit Thivi_2831 PF05746 DALR anticodon binding domain Thivi_2832 PF02091 Glycyl-tRNA synthetase alpha subunit Thivi_2833 PF05981 CreA protein Thivi_2837 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_2840 PF03707 Bacterial signalling protein N terminal repeat Thivi_2840 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2840 PF00563 EAL domain Thivi_2842 PF00712 DNA polymerase III beta subunit, N-terminal domain Thivi_2842 PF02767 DNA polymerase III beta subunit, central domain Thivi_2842 PF02768 DNA polymerase III beta subunit, C-terminal domain Thivi_2843 PF08299 Bacterial dnaA protein helix-turn-helix Thivi_2843 PF11638 DnaA N-terminal domain Thivi_2843 PF00308 Bacterial dnaA protein Thivi_2845 PF13361 UvrD-like helicase C-terminal domain Thivi_2845 PF00580 UvrD/REP helicase N-terminal domain Thivi_2846 PF00575 S1 RNA binding domain Thivi_2847 PF04055 Radical SAM superfamily Thivi_2847 PF06969 HemN C-terminal domain Thivi_2848 PF01197 Ribosomal protein L31 Thivi_2850 PF00285 Citrate synthase, C-terminal domain Thivi_2856 PF11741 AMIN domain Thivi_2856 PF07660 Secretin and TonB N terminus short domain Thivi_2856 PF00263 Bacterial type II and III secretion system protein Thivi_2856 PF03958 Bacterial type II/III secretion system short domain Thivi_2858 PF01202 Shikimate kinase Thivi_2859 PF01761 3-dehydroquinate synthase Thivi_2860 PF00310 Glutamine amidotransferases class-II Thivi_2860 PF04898 Glutamate synthase central domain Thivi_2860 PF01645 Conserved region in glutamate synthase Thivi_2860 PF01493 GXGXG motif Thivi_2861 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_2861 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thivi_2863 PF00437 Type II/IV secretion system protein Thivi_2864 PF00437 Type II/IV secretion system protein Thivi_2865 PF00263 Bacterial type II and III secretion system protein Thivi_2865 PF03958 Bacterial type II/III secretion system short domain Thivi_2868 PF05137 Fimbrial assembly protein (PilN) Thivi_2869 PF03934 Type II secretion system (T2SS), protein K Thivi_2871 PF07963 Prokaryotic N-terminal methylation motif Thivi_2873 PF08334 Type II secretion system (T2SS), protein G Thivi_2873 PF07963 Prokaryotic N-terminal methylation motif Thivi_2874 PF12161 HsdM N-terminal domain Thivi_2874 PF02384 N-6 DNA Methylase Thivi_2891 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thivi_2891 PF05362 Lon protease (S16) C-terminal proteolytic domain Thivi_2891 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_2894 PF01208 Uroporphyrinogen decarboxylase (URO-D) Thivi_2895 PF03649 Uncharacterised protein family (UPF0014) Thivi_2896 PF08402 TOBE domain Thivi_2896 PF00005 ABC transporter Thivi_2897 PF02390 Putative methyltransferase Thivi_2898 PF05690 Thiazole biosynthesis protein ThiG Thivi_2900 PF00483 Nucleotidyl transferase Thivi_2901 PF00128 Alpha amylase, catalytic domain Thivi_2901 PF02806 Alpha amylase, C-terminal all-beta domain Thivi_2901 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thivi_2902 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Thivi_2904 PF02391 MoaE protein Thivi_2905 PF01751 Toprim domain Thivi_2905 PF18053 DNA gyrase B subunit insert domain Thivi_2905 PF00986 DNA gyrase B subunit, carboxyl terminus Thivi_2905 PF00204 DNA gyrase B Thivi_2905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_2908 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_2909 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thivi_2910 PF00361 Proton-conducting membrane transporter Thivi_2912 PF00146 NADH dehydrogenase Thivi_2913 PF00361 Proton-conducting membrane transporter Thivi_2915 PF17284 Spermidine synthase tetramerisation domain Thivi_2921 PF00092 von Willebrand factor type A domain Thivi_2923 PF03741 Integral membrane protein TerC family Thivi_2931 PF00398 Ribosomal RNA adenine dimethylase Thivi_2932 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thivi_2946 PF02371 Transposase IS116/IS110/IS902 family Thivi_2946 PF01548 Transposase Thivi_2957 PF03334 Na+/H+ antiporter subunit Thivi_2958 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Thivi_2960 PF00361 Proton-conducting membrane transporter Thivi_2961 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thivi_2962 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Thivi_2962 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thivi_2962 PF00361 Proton-conducting membrane transporter Thivi_2962 PF13244 Domain of unknown function (DUF4040) Thivi_2966 PF01609 Transposase DDE domain Thivi_2966 PF13808 DDE_Tnp_1-associated Thivi_2970 PF03734 L,D-transpeptidase catalytic domain Thivi_2970 PF17969 L,D-transpeptidase C-terminal domain Thivi_2971 PF03144 Elongation factor Tu domain 2 Thivi_2971 PF03764 Elongation factor G, domain IV Thivi_2971 PF00009 Elongation factor Tu GTP binding domain Thivi_2971 PF14492 Elongation Factor G, domain II Thivi_2971 PF00679 Elongation factor G C-terminus Thivi_2972 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2974 PF00484 Carbonic anhydrase Thivi_2976 PF02630 SCO1/SenC Thivi_2978 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thivi_2984 PF18075 FtsX extracellular domain Thivi_2985 PF00005 ABC transporter Thivi_2986 PF00448 SRP54-type protein, GTPase domain Thivi_2986 PF02881 SRP54-type protein, helical bundle domain Thivi_2987 PF03707 Bacterial signalling protein N terminal repeat Thivi_2987 PF00990 Diguanylate cyclase, GGDEF domain Thivi_2987 PF00563 EAL domain Thivi_2988 PF01739 CheR methyltransferase, SAM binding domain Thivi_2988 PF03705 CheR methyltransferase, all-alpha domain Thivi_2988 PF01339 CheB methylesterase Thivi_2988 PF08448 PAS fold Thivi_2989 PF03471 Transporter associated domain Thivi_2989 PF01595 Cyclin M transmembrane N-terminal domain Thivi_2989 PF00571 CBS domain Thivi_2990 PF01595 Cyclin M transmembrane N-terminal domain Thivi_2990 PF03471 Transporter associated domain Thivi_2990 PF00571 CBS domain Thivi_2991 PF07238 PilZ domain Thivi_2991 PF00535 Glycosyl transferase family 2 Thivi_2994 PF00037 4Fe-4S binding domain Thivi_2995 PF01467 Cytidylyltransferase-like Thivi_2998 PF05193 Peptidase M16 inactive domain Thivi_2998 PF00675 Insulinase (Peptidase family M16) Thivi_2999 PF00675 Insulinase (Peptidase family M16) Thivi_2999 PF05193 Peptidase M16 inactive domain Thivi_3000 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3000 PF08448 PAS fold Thivi_3000 PF13426 PAS domain Thivi_3000 PF00072 Response regulator receiver domain Thivi_3002 PF00437 Type II/IV secretion system protein Thivi_3002 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thivi_3003 PF01180 Dihydroorotate dehydrogenase Thivi_3005 PF00825 Ribonuclease P Thivi_3006 PF01809 Putative membrane protein insertion efficiency factor Thivi_3007 PF14849 YidC periplasmic domain Thivi_3007 PF02096 60Kd inner membrane protein Thivi_3008 PF12631 MnmE helical domain Thivi_3008 PF10396 GTP-binding protein TrmE N-terminus Thivi_3008 PF01926 50S ribosome-binding GTPase Thivi_3013 PF01609 Transposase DDE domain Thivi_3013 PF13808 DDE_Tnp_1-associated Thivi_3025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Thivi_3027 PF00905 Penicillin binding protein transpeptidase domain Thivi_3029 PF06167 Glucose-regulated metallo-peptidase M90 Thivi_3031 PF17954 Quercetinase C-terminal cupin domain Thivi_3031 PF02678 Pirin Thivi_3032 PF00106 short chain dehydrogenase Thivi_3037 PF02080 TrkA-C domain Thivi_3037 PF03600 Citrate transporter Thivi_3038 PF10609 NUBPL iron-transfer P-loop NTPase Thivi_3039 PF03707 Bacterial signalling protein N terminal repeat Thivi_3039 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3039 PF00563 EAL domain Thivi_3039 PF13188 PAS domain Thivi_3040 PF00692 dUTPase Thivi_3043 PF00534 Glycosyl transferases group 1 Thivi_3043 PF13439 Glycosyltransferase Family 4 Thivi_3046 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_3047 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_3048 PF00005 ABC transporter Thivi_3049 PF01895 PhoU domain Thivi_3052 PF00753 Metallo-beta-lactamase superfamily Thivi_3052 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thivi_3053 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thivi_3053 PF02896 PEP-utilising enzyme, TIM barrel domain Thivi_3053 PF00391 PEP-utilising enzyme, mobile domain Thivi_3055 PF00535 Glycosyl transferase family 2 Thivi_3059 PF01578 Cytochrome C assembly protein Thivi_3062 PF03379 CcmB protein Thivi_3063 PF00005 ABC transporter Thivi_3065 PF03918 Cytochrome C biogenesis protein Thivi_3066 PF08534 Redoxin Thivi_3067 PF01578 Cytochrome C assembly protein Thivi_3067 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Thivi_3068 PF03100 CcmE Thivi_3069 PF02586 SOS response associated peptidase (SRAP) Thivi_3070 PF00581 Rhodanese-like domain Thivi_3071 PF07503 HypF finger Thivi_3071 PF00708 Acylphosphatase Thivi_3071 PF17788 HypF Kae1-like domain Thivi_3071 PF01300 Telomere recombination Thivi_3072 PF01625 Peptide methionine sulfoxide reductase Thivi_3075 PF00501 AMP-binding enzyme Thivi_3075 PF16177 Acetyl-coenzyme A synthetase N-terminus Thivi_3075 PF13193 AMP-binding enzyme C-terminal domain Thivi_3076 PF00202 Aminotransferase class-III Thivi_3077 PF02581 Thiamine monophosphate synthase Thivi_3078 PF08543 Phosphomethylpyrimidine kinase Thivi_3079 PF00301 Rubredoxin Thivi_3081 PF01521 Iron-sulphur cluster biosynthesis Thivi_3082 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thivi_3082 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thivi_3083 PF01521 Iron-sulphur cluster biosynthesis Thivi_3085 PF00579 tRNA synthetases class I (W and Y) Thivi_3087 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thivi_3087 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thivi_3088 PF01488 Shikimate / quinate 5-dehydrogenase Thivi_3088 PF08501 Shikimate dehydrogenase substrate binding domain Thivi_3088 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Thivi_3089 PF00490 Delta-aminolevulinic acid dehydratase Thivi_3090 PF00425 chorismate binding enzyme Thivi_3090 PF04715 Anthranilate synthase component I, N terminal region Thivi_3092 PF01556 DnaJ C terminal domain Thivi_3092 PF00226 DnaJ domain Thivi_3094 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thivi_3094 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thivi_3095 PF01510 N-acetylmuramoyl-L-alanine amidase Thivi_3097 PF00873 AcrB/AcrD/AcrF family Thivi_3099 PF01555 DNA methylase Thivi_3109 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system Thivi_3111 PF02754 Cysteine-rich domain Thivi_3114 PF01593 Flavin containing amine oxidoreductase Thivi_3115 PF01068 ATP dependent DNA ligase domain Thivi_3115 PF14743 DNA ligase OB-like domain Thivi_3116 PF05724 Thiopurine S-methyltransferase (TPMT) Thivi_3117 PF03477 ATP cone domain Thivi_3117 PF02867 Ribonucleotide reductase, barrel domain Thivi_3117 PF00317 Ribonucleotide reductase, all-alpha domain Thivi_3120 PF05724 Thiopurine S-methyltransferase (TPMT) Thivi_3121 PF02623 FliW protein Thivi_3122 PF00456 Transketolase, thiamine diphosphate binding domain Thivi_3123 PF02779 Transketolase, pyrimidine binding domain Thivi_3123 PF02780 Transketolase, C-terminal domain Thivi_3125 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thivi_3126 PF02699 Preprotein translocase subunit Thivi_3127 PF13721 SecD export protein N-terminal TM region Thivi_3127 PF02355 Protein export membrane protein Thivi_3127 PF07549 SecD/SecF GG Motif Thivi_3128 PF02355 Protein export membrane protein Thivi_3128 PF07549 SecD/SecF GG Motif Thivi_3131 PF13472 GDSL-like Lipase/Acylhydrolase family Thivi_3132 PF00005 ABC transporter Thivi_3136 PF13203 Putative metallopeptidase domain Thivi_3136 PF09967 VWA-like domain (DUF2201) Thivi_3137 PF01435 Peptidase family M48 Thivi_3142 PF02082 Transcriptional regulator Thivi_3143 PF00132 Bacterial transferase hexapeptide (six repeats) Thivi_3144 PF01555 DNA methylase Thivi_3148 PF00588 SpoU rRNA Methylase family Thivi_3149 PF00459 Inositol monophosphatase family Thivi_3150 PF00700 Bacterial flagellin C-terminal helical region Thivi_3150 PF00669 Bacterial flagellin N-terminal helical region Thivi_3154 PF12950 TaqI-like C-terminal specificity domain Thivi_3154 PF07669 Eco57I restriction-modification methylase Thivi_3155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thivi_3155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thivi_3155 PF16582 Middle domain of thiamine pyrophosphate Thivi_3156 PF00425 chorismate binding enzyme Thivi_3158 PF13460 NAD(P)H-binding Thivi_3158 PF11066 Protein of unknown function (DUF2867) Thivi_3160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_3160 PF00672 HAMP domain Thivi_3160 PF12729 Four helix bundle sensory module for signal transduction Thivi_3161 PF00933 Glycosyl hydrolase family 3 N terminal domain Thivi_3164 PF01048 Phosphorylase superfamily Thivi_3166 PF02576 RimP N-terminal domain Thivi_3166 PF17384 RimP C-terminal SH3 domain Thivi_3167 PF13184 NusA-like KH domain Thivi_3167 PF00575 S1 RNA binding domain Thivi_3167 PF08529 NusA N-terminal domain Thivi_3168 PF03144 Elongation factor Tu domain 2 Thivi_3168 PF04760 Translation initiation factor IF-2, N-terminal region Thivi_3168 PF00009 Elongation factor Tu GTP binding domain Thivi_3168 PF11987 Translation-initiation factor 2 Thivi_3168 PF08364 Bacterial translation initiation factor IF-2 associated region Thivi_3169 PF02033 Ribosome-binding factor A Thivi_3170 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thivi_3170 PF09157 Pseudouridine synthase II TruB, C-terminal Thivi_3170 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thivi_3171 PF00312 Ribosomal protein S15 Thivi_3172 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thivi_3172 PF00575 S1 RNA binding domain Thivi_3172 PF00013 KH domain Thivi_3172 PF01138 3' exoribonuclease family, domain 1 Thivi_3172 PF03725 3' exoribonuclease family, domain 2 Thivi_3173 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_3174 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_3175 PF00005 ABC transporter Thivi_3175 PF08402 TOBE domain Thivi_3176 PF13416 Bacterial extracellular solute-binding protein Thivi_3177 PF00977 Histidine biosynthesis protein Thivi_3179 PF13187 4Fe-4S dicluster domain Thivi_3179 PF04060 Putative Fe-S cluster Thivi_3181 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thivi_3181 PF13237 4Fe-4S dicluster domain Thivi_3181 PF13375 RnfC Barrel sandwich hybrid domain Thivi_3181 PF10531 SLBB domain Thivi_3182 PF03116 NQR2, RnfD, RnfE family Thivi_3183 PF04205 FMN-binding domain Thivi_3184 PF02508 Rnf-Nqr subunit, membrane protein Thivi_3185 PF02508 Rnf-Nqr subunit, membrane protein Thivi_3187 PF00970 Oxidoreductase FAD-binding domain Thivi_3187 PF01383 CpcD/allophycocyanin linker domain Thivi_3187 PF00175 Oxidoreductase NAD-binding domain Thivi_3188 PF00005 ABC transporter Thivi_3188 PF12848 ABC transporter Thivi_3191 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Thivi_3192 PF02080 TrkA-C domain Thivi_3192 PF02254 TrkA-N domain Thivi_3193 PF02954 Bacterial regulatory protein, Fis family Thivi_3193 PF00072 Response regulator receiver domain Thivi_3193 PF00158 Sigma-54 interaction domain Thivi_3194 PF00672 HAMP domain Thivi_3194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3194 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3194 PF00989 PAS fold Thivi_3196 PF01189 16S rRNA methyltransferase RsmB/F Thivi_3196 PF01029 NusB family Thivi_3197 PF00551 Formyl transferase Thivi_3197 PF02911 Formyl transferase, C-terminal domain Thivi_3198 PF01327 Polypeptide deformylase Thivi_3200 PF02481 DNA recombination-mediator protein A Thivi_3200 PF17782 DprA winged helix domain Thivi_3201 PF04361 Protein of unknown function (DUF494) Thivi_3202 PF01131 DNA topoisomerase Thivi_3202 PF01751 Toprim domain Thivi_3202 PF13368 Topoisomerase C-terminal repeat Thivi_3204 PF01300 Telomere recombination Thivi_3209 PF03600 Citrate transporter Thivi_3210 PF00155 Aminotransferase class I and II Thivi_3213 PF01434 Peptidase family M41 Thivi_3213 PF17862 AAA+ lid domain Thivi_3213 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_3214 PF02080 TrkA-C domain Thivi_3214 PF03600 Citrate transporter Thivi_3219 PF18030 RimK PreATP-grasp domain Thivi_3219 PF08443 RimK-like ATP-grasp domain Thivi_3220 PF01252 Signal peptidase (SPase) II Thivi_3223 PF08264 Anticodon-binding domain of tRNA Thivi_3223 PF00133 tRNA synthetases class I (I, L, M and V) Thivi_3223 PF06827 Zinc finger found in FPG and IleRS Thivi_3225 PF00155 Aminotransferase class I and II Thivi_3226 PF00815 Histidinol dehydrogenase Thivi_3228 PF01634 ATP phosphoribosyltransferase Thivi_3229 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thivi_3232 PF02470 MlaD protein Thivi_3233 PF02405 Permease MlaE Thivi_3234 PF00005 ABC transporter Thivi_3235 PF03109 ABC1 family Thivi_3239 PF00392 Bacterial regulatory proteins, gntR family Thivi_3239 PF07729 FCD domain Thivi_3241 PF00285 Citrate synthase, C-terminal domain Thivi_3242 PF03972 MmgE/PrpD family Thivi_3250 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3250 PF07694 5TMR of 5TMR-LYT Thivi_3251 PF08446 PAS fold Thivi_3251 PF00360 Phytochrome region Thivi_3251 PF01590 GAF domain Thivi_3251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3251 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3253 PF00005 ABC transporter Thivi_3253 PF09383 NIL domain Thivi_3257 PF03306 Alpha-acetolactate decarboxylase Thivi_3262 PF00005 ABC transporter Thivi_3263 PF00950 ABC 3 transport family Thivi_3264 PF01475 Ferric uptake regulator family Thivi_3270 PF00830 Ribosomal L28 family Thivi_3271 PF00471 Ribosomal protein L33 Thivi_3276 PF00534 Glycosyl transferases group 1 Thivi_3276 PF08323 Starch synthase catalytic domain Thivi_3277 PF00012 Hsp70 protein Thivi_3281 PF10017 Histidine-specific methyltransferase, SAM-dependent Thivi_3282 PF03781 Sulfatase-modifying factor enzyme 1 Thivi_3282 PF12867 DinB superfamily Thivi_3285 PF01521 Iron-sulphur cluster biosynthesis Thivi_3286 PF02657 Fe-S metabolism associated domain Thivi_3288 PF00912 Transglycosylase Thivi_3289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3289 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3299 PF00890 FAD binding domain Thivi_3300 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Thivi_3300 PF13187 4Fe-4S dicluster domain Thivi_3301 PF04241 Protein of unknown function (DUF423) Thivi_3302 PF04452 RNA methyltransferase Thivi_3303 PF01627 Hpt domain Thivi_3303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3303 PF00072 Response regulator receiver domain Thivi_3303 PF01584 CheW-like domain Thivi_3304 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_3304 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Thivi_3306 PF00072 Response regulator receiver domain Thivi_3307 PF00072 Response regulator receiver domain Thivi_3308 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Thivi_3308 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Thivi_3311 PF02622 Uncharacterized ACR, COG1678 Thivi_3312 PF03652 Holliday junction resolvase Thivi_3313 PF00156 Phosphoribosyl transferase domain Thivi_3314 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thivi_3314 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thivi_3315 PF01979 Amidohydrolase family Thivi_3316 PF00437 Type II/IV secretion system protein Thivi_3317 PF00437 Type II/IV secretion system protein Thivi_3319 PF00731 AIR carboxylase Thivi_3320 PF02222 ATP-grasp domain Thivi_3320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Thivi_3322 PF04607 Region found in RelA / SpoT proteins Thivi_3322 PF13291 ACT domain Thivi_3322 PF02824 TGS domain Thivi_3323 PF01192 RNA polymerase Rpb6 Thivi_3324 PF00625 Guanylate kinase Thivi_3325 PF08340 Domain of unknown function (DUF1732) Thivi_3325 PF03755 YicC-like family, N-terminal region Thivi_3326 PF00069 Protein kinase domain Thivi_3327 PF01138 3' exoribonuclease family, domain 1 Thivi_3327 PF03725 3' exoribonuclease family, domain 2 Thivi_3328 PF01725 Ham1 family Thivi_3329 PF01168 Alanine racemase, N-terminal domain Thivi_3330 PF03807 NADP oxidoreductase coenzyme F420-dependent Thivi_3330 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thivi_3331 PF02325 YGGT family Thivi_3332 PF02594 Uncharacterised ACR, YggU family COG1872 Thivi_3334 PF00156 Phosphoribosyl transferase domain Thivi_3336 PF05159 Capsule polysaccharide biosynthesis protein Thivi_3342 PF01979 Amidohydrolase family Thivi_3343 PF01008 Initiation factor 2 subunit family Thivi_3345 PF01687 Riboflavin kinase Thivi_3345 PF06574 FAD synthetase Thivi_3347 PF00905 Penicillin binding protein transpeptidase domain Thivi_3347 PF00912 Transglycosylase Thivi_3347 PF14814 Bifunctional transglycosylase second domain Thivi_3349 PF13307 Helicase C-terminal domain Thivi_3349 PF04851 Type III restriction enzyme, res subunit Thivi_3350 PF00578 AhpC/TSA family Thivi_3350 PF10417 C-terminal domain of 1-Cys peroxiredoxin Thivi_3351 PF00271 Helicase conserved C-terminal domain Thivi_3351 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Thivi_3351 PF00270 DEAD/DEAH box helicase Thivi_3351 PF04408 Helicase associated domain (HA2) Thivi_3351 PF11898 Domain of unknown function (DUF3418) Thivi_3352 PF00072 Response regulator receiver domain Thivi_3352 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3352 PF00563 EAL domain Thivi_3353 PF09334 tRNA synthetases class I (M) Thivi_3353 PF01588 Putative tRNA binding domain Thivi_3357 PF00549 CoA-ligase Thivi_3357 PF08442 ATP-grasp domain Thivi_3358 PF02629 CoA binding domain Thivi_3358 PF00549 CoA-ligase Thivi_3360 PF00795 Carbon-nitrogen hydrolase Thivi_3360 PF02540 NAD synthase Thivi_3361 PF00543 Nitrogen regulatory protein P-II Thivi_3362 PF13525 Outer membrane lipoprotein Thivi_3363 PF01479 S4 domain Thivi_3363 PF00849 RNA pseudouridylate synthase Thivi_3366 PF01327 Polypeptide deformylase Thivi_3367 PF11818 C-terminal domain of tail specific protease (DUF3340) Thivi_3367 PF00595 PDZ domain Thivi_3367 PF03572 Peptidase family S41 Thivi_3367 PF17804 Tail specific protease N-terminal domain Thivi_3368 PF04262 Glutamate-cysteine ligase Thivi_3370 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_3370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thivi_3372 PF00730 HhH-GPD superfamily base excision DNA repair protein Thivi_3372 PF00633 Helix-hairpin-helix motif Thivi_3372 PF10576 Iron-sulfur binding domain of endonuclease III Thivi_3373 PF01464 Transglycosylase SLT domain Thivi_3375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thivi_3375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thivi_3375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thivi_3375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thivi_3377 PF01926 50S ribosome-binding GTPase Thivi_3378 PF01967 MoaC family Thivi_3379 PF00719 Inorganic pyrophosphatase Thivi_3381 PF00365 Phosphofructokinase Thivi_3383 PF01494 FAD binding domain Thivi_3384 PF01494 FAD binding domain Thivi_3385 PF05195 Aminopeptidase P, N-terminal domain Thivi_3385 PF00557 Metallopeptidase family M24 Thivi_3386 PF03695 Uncharacterised protein family (UPF0149) Thivi_3388 PF05164 Cell division protein ZapA Thivi_3390 PF01812 5-formyltetrahydrofolate cyclo-ligase family Thivi_3391 PF00563 EAL domain Thivi_3391 PF08668 HDOD domain Thivi_3392 PF00158 Sigma-54 interaction domain Thivi_3392 PF02954 Bacterial regulatory protein, Fis family Thivi_3392 PF13185 GAF domain Thivi_3393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3393 PF00989 PAS fold Thivi_3394 PF02508 Rnf-Nqr subunit, membrane protein Thivi_3395 PF04060 Putative Fe-S cluster Thivi_3396 PF13375 RnfC Barrel sandwich hybrid domain Thivi_3396 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thivi_3396 PF13237 4Fe-4S dicluster domain Thivi_3396 PF10531 SLBB domain Thivi_3397 PF03116 NQR2, RnfD, RnfE family Thivi_3398 PF04205 FMN-binding domain Thivi_3399 PF02508 Rnf-Nqr subunit, membrane protein Thivi_3400 PF03658 RnfH family Ubiquitin Thivi_3401 PF01844 HNH endonuclease Thivi_3402 PF01170 Putative RNA methylase family UPF0020 Thivi_3402 PF02926 THUMP domain Thivi_3402 PF10672 S-adenosylmethionine-dependent methyltransferase Thivi_3404 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_3404 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thivi_3405 PF00365 Phosphofructokinase Thivi_3406 PF00364 Biotin-requiring enzyme Thivi_3406 PF02817 e3 binding domain Thivi_3406 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thivi_3407 PF00456 Transketolase, thiamine diphosphate binding domain Thivi_3407 PF17831 Pyruvate dehydrogenase E1 component middle domain Thivi_3415 PF07690 Major Facilitator Superfamily Thivi_3416 PF00581 Rhodanese-like domain Thivi_3417 PF00293 NUDIX domain Thivi_3417 PF09297 NADH pyrophosphatase zinc ribbon domain Thivi_3420 PF10693 Protein of unknown function (DUF2499) Thivi_3422 PF03793 PASTA domain Thivi_3422 PF00069 Protein kinase domain Thivi_3424 PF00005 ABC transporter Thivi_3426 PF03781 Sulfatase-modifying factor enzyme 1 Thivi_3428 PF00498 FHA domain Thivi_3428 PF12401 Protein of unknown function (DUF2662) Thivi_3434 PF02934 GatB/GatE catalytic domain Thivi_3434 PF02637 GatB domain Thivi_3435 PF00106 short chain dehydrogenase Thivi_3437 PF09361 Phasin protein Thivi_3438 PF05233 PHB accumulation regulatory domain Thivi_3438 PF07879 PHB/PHA accumulation regulator DNA-binding domain Thivi_3439 PF02803 Thiolase, C-terminal domain Thivi_3439 PF00108 Thiolase, N-terminal domain Thivi_3440 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Thivi_3441 PF00561 alpha/beta hydrolase fold Thivi_3445 PF01618 MotA/TolQ/ExbB proton channel family Thivi_3446 PF02472 Biopolymer transport protein ExbD/TolR Thivi_3447 PF03544 Gram-negative bacterial TonB protein C-terminal Thivi_3451 PF00528 Binding-protein-dependent transport system inner membrane component Thivi_3452 PF00005 ABC transporter Thivi_3452 PF08402 TOBE domain Thivi_3454 PF00072 Response regulator receiver domain Thivi_3454 PF00563 EAL domain Thivi_3454 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3455 PF13667 ThiC-associated domain Thivi_3455 PF01964 Radical SAM ThiC family Thivi_3461 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3461 PF00072 Response regulator receiver domain Thivi_3462 PF00343 Carbohydrate phosphorylase Thivi_3465 PF12848 ABC transporter Thivi_3465 PF00005 ABC transporter Thivi_3466 PF01078 Magnesium chelatase, subunit ChlI Thivi_3466 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thivi_3467 PF04380 Membrane fusogenic activity Thivi_3469 PF00543 Nitrogen regulatory protein P-II Thivi_3470 PF00909 Ammonium Transporter Family Thivi_3471 PF17284 Spermidine synthase tetramerisation domain Thivi_3472 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Thivi_3472 PF01610 Transposase Thivi_3472 PF13542 Helix-turn-helix domain of transposase family ISL3 Thivi_3473 PF01804 Penicillin amidase Thivi_3474 PF01218 Coproporphyrinogen III oxidase Thivi_3476 PF00248 Aldo/keto reductase family Thivi_3477 PF00834 Ribulose-phosphate 3 epimerase family Thivi_3478 PF13419 Haloacid dehalogenase-like hydrolase Thivi_3479 PF00425 chorismate binding enzyme Thivi_3479 PF04715 Anthranilate synthase component I, N terminal region Thivi_3484 PF00375 Sodium:dicarboxylate symporter family Thivi_3487 PF12833 Helix-turn-helix domain Thivi_3488 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) Thivi_3492 PF00034 Cytochrome c Thivi_3493 PF00034 Cytochrome c Thivi_3494 PF08264 Anticodon-binding domain of tRNA Thivi_3494 PF10458 Valyl tRNA synthetase tRNA binding arm Thivi_3494 PF00133 tRNA synthetases class I (I, L, M and V) Thivi_3495 PF17761 DUF1016 N-terminal domain Thivi_3495 PF06250 YhcG PDDEXK nuclease domain Thivi_3501 PF03852 DNA mismatch endonuclease Vsr Thivi_3519 PF03237 Terminase-like family Thivi_3526 PF01555 DNA methylase Thivi_3528 PF05069 Phage virion morphogenesis family Thivi_3542 PF01464 Transglycosylase SLT domain Thivi_3542 PF10145 Phage-related minor tail protein Thivi_3542 PF01551 Peptidase family M23 Thivi_3547 PF13808 DDE_Tnp_1-associated Thivi_3547 PF01609 Transposase DDE domain Thivi_3552 PF13808 DDE_Tnp_1-associated Thivi_3552 PF01609 Transposase DDE domain Thivi_3554 PF03480 Bacterial extracellular solute-binding protein, family 7 Thivi_3555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Thivi_3557 PF01292 Prokaryotic cytochrome b561 Thivi_3558 PF01544 CorA-like Mg2+ transporter protein Thivi_3564 PF07690 Major Facilitator Superfamily Thivi_3567 PF03030 Inorganic H+ pyrophosphatase Thivi_3570 PF08003 Protein of unknown function (DUF1698) Thivi_3571 PF13649 Methyltransferase domain Thivi_3572 PF17941 Polyphosphate kinase C-terminal domain 1 Thivi_3572 PF13089 Polyphosphate kinase N-terminal domain Thivi_3572 PF13090 Polyphosphate kinase C-terminal domain 2 Thivi_3572 PF02503 Polyphosphate kinase middle domain Thivi_3574 PF02541 Ppx/GppA phosphatase family Thivi_3576 PF00924 Mechanosensitive ion channel Thivi_3576 PF12795 Mechanosensitive ion channel porin domain Thivi_3576 PF12794 Mechanosensitive ion channel inner membrane domain 1 Thivi_3577 PF00583 Acetyltransferase (GNAT) family Thivi_3577 PF00696 Amino acid kinase family Thivi_3578 PF02954 Bacterial regulatory protein, Fis family Thivi_3578 PF00072 Response regulator receiver domain Thivi_3578 PF00158 Sigma-54 interaction domain Thivi_3579 PF05221 S-adenosyl-L-homocysteine hydrolase Thivi_3579 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thivi_3583 PF02219 Methylenetetrahydrofolate reductase Thivi_3585 PF13808 DDE_Tnp_1-associated Thivi_3585 PF01609 Transposase DDE domain Thivi_3590 PF00117 Glutamine amidotransferase class-I Thivi_3591 PF02885 Glycosyl transferase family, helical bundle domain Thivi_3591 PF00591 Glycosyl transferase family, a/b domain Thivi_3592 PF00218 Indole-3-glycerol phosphate synthase Thivi_3593 PF13545 Crp-like helix-turn-helix domain Thivi_3593 PF00027 Cyclic nucleotide-binding domain Thivi_3594 PF02566 OsmC-like protein Thivi_3595 PF02675 S-adenosylmethionine decarboxylase Thivi_3596 PF03232 Ubiquinone biosynthesis protein COQ7 Thivi_3597 PF13183 4Fe-4S dicluster domain Thivi_3597 PF02754 Cysteine-rich domain Thivi_3599 PF00572 Ribosomal protein L13 Thivi_3600 PF00380 Ribosomal protein S9/S16 Thivi_3603 PF13333 Integrase core domain Thivi_3603 PF13276 HTH-like domain Thivi_3603 PF00665 Integrase core domain Thivi_3605 PF00271 Helicase conserved C-terminal domain Thivi_3605 PF00270 DEAD/DEAH box helicase Thivi_3605 PF03880 DbpA RNA binding domain Thivi_3607 PF01609 Transposase DDE domain Thivi_3607 PF13808 DDE_Tnp_1-associated Thivi_3614 PF00795 Carbon-nitrogen hydrolase Thivi_3616 PF08245 Mur ligase middle domain Thivi_3616 PF02875 Mur ligase family, glutamate ligase domain Thivi_3616 PF01225 Mur ligase family, catalytic domain Thivi_3617 PF02441 Flavoprotein Thivi_3619 PF01553 Acyltransferase Thivi_3619 PF00501 AMP-binding enzyme Thivi_3619 PF13193 AMP-binding enzyme C-terminal domain Thivi_3621 PF00293 NUDIX domain Thivi_3622 PF02896 PEP-utilising enzyme, TIM barrel domain Thivi_3622 PF05524 PEP-utilising enzyme, N-terminal Thivi_3622 PF01590 GAF domain Thivi_3622 PF00391 PEP-utilising enzyme, mobile domain Thivi_3624 PF13439 Glycosyltransferase Family 4 Thivi_3625 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thivi_3625 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thivi_3627 PF13559 Domain of unknown function (DUF4129) Thivi_3627 PF11992 Domain of unknown function (DUF3488) Thivi_3627 PF01841 Transglutaminase-like superfamily Thivi_3644 PF14659 Phage integrase, N-terminal SAM-like domain Thivi_3644 PF00589 Phage integrase family Thivi_3646 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) Thivi_3647 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thivi_3648 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_3649 PF11844 Domain of unknown function (DUF3364) Thivi_3649 PF00148 Nitrogenase component 1 type Oxidoreductase Thivi_3650 PF06988 NifT/FixU protein Thivi_3651 PF00037 4Fe-4S binding domain Thivi_3652 PF02579 Dinitrogenase iron-molybdenum cofactor Thivi_3652 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal Thivi_3654 PF01816 Leucine rich repeat variant Thivi_3654 PF05484 LRV protein FeS4 cluster Thivi_3657 PF00343 Carbohydrate phosphorylase Thivi_3659 PF03600 Citrate transporter Thivi_3660 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thivi_3661 PF01594 AI-2E family transporter Thivi_3663 PF03976 Polyphosphate kinase 2 (PPK2) Thivi_3671 PF01740 STAS domain Thivi_3671 PF00916 Sulfate permease family Thivi_3675 PF00585 C-terminal regulatory domain of Threonine dehydratase Thivi_3675 PF00291 Pyridoxal-phosphate dependent enzyme Thivi_3676 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Thivi_3676 PF06827 Zinc finger found in FPG and IleRS Thivi_3676 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Thivi_3679 PF00534 Glycosyl transferases group 1 Thivi_3683 PF01131 DNA topoisomerase Thivi_3683 PF01751 Toprim domain Thivi_3687 PF04607 Region found in RelA / SpoT proteins Thivi_3687 PF13291 ACT domain Thivi_3687 PF02824 TGS domain Thivi_3689 PF00072 Response regulator receiver domain Thivi_3690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3690 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3690 PF01627 Hpt domain Thivi_3690 PF00072 Response regulator receiver domain Thivi_3691 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3691 PF00672 HAMP domain Thivi_3692 PF00486 Transcriptional regulatory protein, C terminal Thivi_3692 PF00072 Response regulator receiver domain Thivi_3695 PF05175 Methyltransferase small domain Thivi_3697 PF01455 HupF/HypC family Thivi_3698 PF01924 Hydrogenase formation hypA family Thivi_3700 PF02769 AIR synthase related protein, C-terminal domain Thivi_3700 PF00586 AIR synthase related protein, N-terminal domain Thivi_3703 PF03466 LysR substrate binding domain Thivi_3703 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thivi_3704 PF16363 GDP-mannose 4,6 dehydratase Thivi_3705 PF00483 Nucleotidyl transferase Thivi_3706 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Thivi_3707 PF04321 RmlD substrate binding domain Thivi_3708 PF09335 SNARE associated Golgi protein Thivi_3714 PF13808 DDE_Tnp_1-associated Thivi_3714 PF01609 Transposase DDE domain Thivi_3717 PF13808 DDE_Tnp_1-associated Thivi_3717 PF01609 Transposase DDE domain Thivi_3718 PF00196 Bacterial regulatory proteins, luxR family Thivi_3718 PF00072 Response regulator receiver domain Thivi_3723 PF00589 Phage integrase family Thivi_3723 PF02899 Phage integrase, N-terminal SAM-like domain Thivi_3724 PF04461 Protein of unknown function (DUF520) Thivi_3725 PF10411 Disulfide bond isomerase protein N-terminus Thivi_3725 PF13098 Thioredoxin-like domain Thivi_3735 PF01609 Transposase DDE domain Thivi_3735 PF13808 DDE_Tnp_1-associated Thivi_3738 PF01624 MutS domain I Thivi_3738 PF05188 MutS domain II Thivi_3738 PF00488 MutS domain V Thivi_3738 PF05192 MutS domain III Thivi_3738 PF05190 MutS family domain IV Thivi_3739 PF13505 Outer membrane protein beta-barrel domain Thivi_3739 PF00691 OmpA family Thivi_3743 PF01784 NIF3 (NGG1p interacting factor 3) Thivi_3744 PF00355 Rieske [2Fe-2S] domain Thivi_3744 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Thivi_3745 PF00033 Cytochrome b/b6/petB Thivi_3745 PF00032 Cytochrome b(C-terminal)/b6/petD Thivi_3746 PF02167 Cytochrome C1 family Thivi_3747 PF00043 Glutathione S-transferase, C-terminal domain Thivi_3747 PF02798 Glutathione S-transferase, N-terminal domain Thivi_3748 PF04386 Stringent starvation protein B Thivi_3750 PF04362 Bacterial Fe(2+) trafficking Thivi_3751 PF14815 NUDIX domain Thivi_3751 PF00730 HhH-GPD superfamily base excision DNA repair protein Thivi_3751 PF00633 Helix-hairpin-helix motif Thivi_3753 PF00501 AMP-binding enzyme Thivi_3755 PF00271 Helicase conserved C-terminal domain Thivi_3755 PF00270 DEAD/DEAH box helicase Thivi_3755 PF03880 DbpA RNA binding domain Thivi_3756 PF04809 HupH hydrogenase expression protein, C-terminal conserved region Thivi_3757 PF01750 Hydrogenase maturation protease Thivi_3758 PF01292 Prokaryotic cytochrome b561 Thivi_3759 PF00374 Nickel-dependent hydrogenase Thivi_3760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_3760 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thivi_3764 PF17999 Pullulanase N1-terminal domain Thivi_3764 PF00128 Alpha amylase, catalytic domain Thivi_3764 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thivi_3766 PF00842 Alanine racemase, C-terminal domain Thivi_3766 PF01168 Alanine racemase, N-terminal domain Thivi_3770 PF01627 Hpt domain Thivi_3770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_3770 PF00672 HAMP domain Thivi_3770 PF00072 Response regulator receiver domain Thivi_3770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3770 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3771 PF00682 HMGL-like Thivi_3771 PF08502 LeuA allosteric (dimerisation) domain Thivi_3772 PF03167 Uracil DNA glycosylase superfamily Thivi_3774 PF01569 PAP2 superfamily Thivi_3775 PF00534 Glycosyl transferases group 1 Thivi_3775 PF13439 Glycosyltransferase Family 4 Thivi_3778 PF00375 Sodium:dicarboxylate symporter family Thivi_3779 PF01225 Mur ligase family, catalytic domain Thivi_3779 PF02875 Mur ligase family, glutamate ligase domain Thivi_3779 PF08245 Mur ligase middle domain Thivi_3783 PF01938 TRAM domain Thivi_3783 PF00919 Uncharacterized protein family UPF0004 Thivi_3783 PF04055 Radical SAM superfamily Thivi_3786 PF00149 Calcineurin-like phosphoesterase Thivi_3786 PF02872 5'-nucleotidase, C-terminal domain Thivi_3789 PF01177 Asp/Glu/Hydantoin racemase Thivi_3791 PF01625 Peptide methionine sulfoxide reductase Thivi_3794 PF05746 DALR anticodon binding domain Thivi_3794 PF03485 Arginyl tRNA synthetase N terminal domain Thivi_3794 PF00750 tRNA synthetases class I (R) Thivi_3795 PF00271 Helicase conserved C-terminal domain Thivi_3795 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thivi_3795 PF18074 Primosomal protein N C-terminal domain Thivi_3795 PF17764 3′ DNA-binding domain (3′BD) Thivi_3795 PF00270 DEAD/DEAH box helicase Thivi_3805 PF01618 MotA/TolQ/ExbB proton channel family Thivi_3806 PF02472 Biopolymer transport protein ExbD/TolR Thivi_3807 PF00664 ABC transporter transmembrane region Thivi_3807 PF00005 ABC transporter Thivi_3808 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Thivi_3809 PF02348 Cytidylyltransferase Thivi_3810 PF00474 Sodium:solute symporter family Thivi_3811 PF04341 Protein of unknown function, DUF485 Thivi_3812 PF01180 Dihydroorotate dehydrogenase Thivi_3813 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thivi_3813 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thivi_3813 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thivi_3813 PF10371 Domain of unknown function Thivi_3813 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thivi_3814 PF00583 Acetyltransferase (GNAT) family Thivi_3818 PF03063 Prismane/CO dehydrogenase family Thivi_3821 PF07995 Glucose / Sorbosone dehydrogenase Thivi_3822 PF00563 EAL domain Thivi_3822 PF03707 Bacterial signalling protein N terminal repeat Thivi_3822 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3824 PF01425 Amidase Thivi_3825 PF02686 Glu-tRNAGln amidotransferase C subunit Thivi_3827 PF04085 rod shape-determining protein MreC Thivi_3829 PF03717 Penicillin-binding Protein dimerisation domain Thivi_3829 PF00905 Penicillin binding protein transpeptidase domain Thivi_3830 PF01098 Cell cycle protein Thivi_3831 PF13406 Transglycosylase SLT domain Thivi_3832 PF05036 Sporulation related domain Thivi_3832 PF03330 Lytic transglycolase Thivi_3833 PF00768 D-alanyl-D-alanine carboxypeptidase Thivi_3833 PF07943 Penicillin-binding protein 5, C-terminal domain Thivi_3834 PF04359 Protein of unknown function (DUF493) Thivi_3835 PF03099 Biotin/lipoate A/B protein ligase family Thivi_3840 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thivi_3842 PF01702 Queuine tRNA-ribosyltransferase Thivi_3843 PF00011 Hsp20/alpha crystallin family Thivi_3844 PF02558 Ketopantoate reductase PanE/ApbA Thivi_3844 PF08546 Ketopantoate reductase PanE/ApbA C terminal Thivi_3845 PF00109 Beta-ketoacyl synthase, N-terminal domain Thivi_3845 PF02801 Beta-ketoacyl synthase, C-terminal domain Thivi_3845 PF08659 KR domain Thivi_3845 PF00698 Acyl transferase domain Thivi_3845 PF00550 Phosphopantetheine attachment site Thivi_3845 PF14765 Polyketide synthase dehydratase Thivi_3845 PF16197 Ketoacyl-synthetase C-terminal extension Thivi_3845 PF08240 Alcohol dehydrogenase GroES-like domain Thivi_3847 PF01171 PP-loop family Thivi_3854 PF02817 e3 binding domain Thivi_3854 PF00364 Biotin-requiring enzyme Thivi_3854 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thivi_3855 PF02779 Transketolase, pyrimidine binding domain Thivi_3855 PF16870 2-oxoglutarate dehydrogenase C-terminal Thivi_3855 PF16078 2-oxoglutarate dehydrogenase N-terminus Thivi_3855 PF00676 Dehydrogenase E1 component Thivi_3859 PF00672 HAMP domain Thivi_3859 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3860 PF00486 Transcriptional regulatory protein, C terminal Thivi_3860 PF00072 Response regulator receiver domain Thivi_3864 PF01432 Peptidase family M3 Thivi_3866 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thivi_3867 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Thivi_3870 PF01370 NAD dependent epimerase/dehydratase family Thivi_3871 PF00970 Oxidoreductase FAD-binding domain Thivi_3871 PF00111 2Fe-2S iron-sulfur cluster binding domain Thivi_3871 PF00175 Oxidoreductase NAD-binding domain Thivi_3881 PF02342 TerD domain Thivi_3883 PF02602 Uroporphyrinogen-III synthase HemD Thivi_3884 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Thivi_3884 PF03900 Porphobilinogen deaminase, C-terminal domain Thivi_3891 PF01609 Transposase DDE domain Thivi_3891 PF13808 DDE_Tnp_1-associated Thivi_3898 PF03600 Citrate transporter Thivi_3899 PF03884 DNA gyrase inhibitor YacG Thivi_3900 PF07072 Cell division protein Thivi_3902 PF01734 Patatin-like phospholipase Thivi_3905 PF01420 Type I restriction modification DNA specificity domain Thivi_3908 PF01668 SmpB protein Thivi_3909 PF00121 Triosephosphate isomerase Thivi_3910 PF03840 Preprotein translocase SecG subunit Thivi_3912 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Thivi_3913 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_3914 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thivi_3915 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thivi_3917 PF10531 SLBB domain Thivi_3917 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thivi_3917 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thivi_3918 PF00384 Molybdopterin oxidoreductase Thivi_3918 PF00384 Molybdopterin oxidoreductase Thivi_3918 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Thivi_3918 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thivi_3918 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Thivi_3918 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thivi_3919 PF00146 NADH dehydrogenase Thivi_3920 PF12838 4Fe-4S dicluster domain Thivi_3921 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Thivi_3922 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thivi_3923 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thivi_3923 PF00361 Proton-conducting membrane transporter Thivi_3924 PF00361 Proton-conducting membrane transporter Thivi_3924 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Thivi_3925 PF00361 Proton-conducting membrane transporter Thivi_3926 PF00701 Dihydrodipicolinate synthetase family Thivi_3927 PF06804 NlpB/DapX lipoprotein Thivi_3928 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3928 PF00072 Response regulator receiver domain Thivi_3934 PF01292 Prokaryotic cytochrome b561 Thivi_3936 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thivi_3936 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thivi_3937 PF13247 4Fe-4S dicluster domain Thivi_3938 PF03916 Polysulphide reductase, NrfD Thivi_3939 PF00374 Nickel-dependent hydrogenase Thivi_3940 PF01750 Hydrogenase maturation protease Thivi_3945 PF02796 Helix-turn-helix domain of resolvase Thivi_3945 PF00239 Resolvase, N terminal domain Thivi_3948 PF02954 Bacterial regulatory protein, Fis family Thivi_3948 PF00072 Response regulator receiver domain Thivi_3948 PF00158 Sigma-54 interaction domain Thivi_3949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3949 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3954 PF02445 Quinolinate synthetase A protein Thivi_3957 PF00873 AcrB/AcrD/AcrF family Thivi_3963 PF03734 L,D-transpeptidase catalytic domain Thivi_3964 PF01476 LysM domain Thivi_3964 PF01464 Transglycosylase SLT domain Thivi_3966 PF00075 RNase H Thivi_3967 PF00929 Exonuclease Thivi_3968 PF00027 Cyclic nucleotide-binding domain Thivi_3968 PF13545 Crp-like helix-turn-helix domain Thivi_3969 PF06418 CTP synthase N-terminus Thivi_3969 PF00117 Glutamine amidotransferase class-I Thivi_3970 PF00793 DAHP synthetase I family Thivi_3975 PF03952 Enolase, N-terminal domain Thivi_3975 PF00113 Enolase, C-terminal TIM barrel domain Thivi_3976 PF04977 Septum formation initiator Thivi_3977 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thivi_3984 PF16886 ATPsynthase alpha/beta subunit N-term extension Thivi_3984 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thivi_3984 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thivi_3989 PF01813 ATP synthase subunit D Thivi_3990 PF00990 Diguanylate cyclase, GGDEF domain Thivi_3990 PF00563 EAL domain Thivi_3990 PF03707 Bacterial signalling protein N terminal repeat Thivi_3991 PF00672 HAMP domain Thivi_3991 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_3991 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_3991 PF00512 His Kinase A (phospho-acceptor) domain Thivi_3991 PF01627 Hpt domain Thivi_3991 PF00072 Response regulator receiver domain Thivi_3992 PF00072 Response regulator receiver domain Thivi_3993 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thivi_3994 PF01243 Pyridoxamine 5'-phosphate oxidase Thivi_3994 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Thivi_3995 PF00463 Isocitrate lyase family Thivi_3996 PF03737 Aldolase/RraA Thivi_3997 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Thivi_3998 PF01256 Carbohydrate kinase Thivi_3998 PF03853 YjeF-related protein N-terminus Thivi_3999 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thivi_4000 PF11741 AMIN domain Thivi_4000 PF01520 N-acetylmuramoyl-L-alanine amidase Thivi_4001 PF01119 DNA mismatch repair protein, C-terminal domain Thivi_4001 PF08676 MutL C terminal dimerisation domain Thivi_4002 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thivi_4003 PF01258 Prokaryotic dksA/traR C4-type zinc finger Thivi_4004 PF13419 Haloacid dehalogenase-like hydrolase Thivi_4005 PF00155 Aminotransferase class I and II Thivi_4008 PF03969 AFG1-like ATPase Thivi_4009 PF02609 Exonuclease VII small subunit Thivi_4010 PF00348 Polyprenyl synthetase Thivi_4012 PF00893 Small Multidrug Resistance protein Thivi_4013 PF02649 Type I GTP cyclohydrolase folE2 Thivi_4018 PF00072 Response regulator receiver domain Thivi_4019 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4019 PF00672 HAMP domain Thivi_4019 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4019 PF00072 Response regulator receiver domain Thivi_4019 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_4019 PF01627 Hpt domain Thivi_4020 PF01053 Cys/Met metabolism PLP-dependent enzyme Thivi_4027 PF13579 Glycosyl transferase 4-like domain Thivi_4027 PF00534 Glycosyl transferases group 1 Thivi_4032 PF00534 Glycosyl transferases group 1 Thivi_4032 PF13439 Glycosyltransferase Family 4 Thivi_4038 PF00005 ABC transporter Thivi_4045 PF00288 GHMP kinases N terminal domain Thivi_4045 PF08544 GHMP kinases C terminal Thivi_4046 PF13580 SIS domain Thivi_4047 PF00483 Nucleotidyl transferase Thivi_4049 PF14307 Glycosyltransferase WbsX Thivi_4049 PF05045 Rhamnan synthesis protein F Thivi_4050 PF00535 Glycosyl transferase family 2 Thivi_4052 PF00535 Glycosyl transferase family 2 Thivi_4057 PF00535 Glycosyl transferase family 2 Thivi_4062 PF00535 Glycosyl transferase family 2 Thivi_4064 PF00534 Glycosyl transferases group 1 Thivi_4064 PF13439 Glycosyltransferase Family 4 Thivi_4065 PF13439 Glycosyltransferase Family 4 Thivi_4065 PF00534 Glycosyl transferases group 1 Thivi_4069 PF03193 RsgA GTPase Thivi_4071 PF00929 Exonuclease Thivi_4078 PF02660 Glycerol-3-phosphate acyltransferase Thivi_4079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4079 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4079 PF00989 PAS fold Thivi_4080 PF00814 Glycoprotease family Thivi_4081 PF01165 Ribosomal protein S21 Thivi_4082 PF09424 Yqey-like protein Thivi_4083 PF01807 CHC2 zinc finger Thivi_4083 PF08275 DNA primase catalytic core, N-terminal domain Thivi_4083 PF13662 Toprim domain Thivi_4083 PF08278 DNA primase DnaG DnaB-binding Thivi_4083 PF10410 DnaB-helicase binding domain of primase Thivi_4084 PF04545 Sigma-70, region 4 Thivi_4084 PF03979 Sigma-70 factor, region 1.1 Thivi_4084 PF04542 Sigma-70 region 2 Thivi_4084 PF00140 Sigma-70 factor, region 1.2 Thivi_4084 PF04546 Sigma-70, non-essential region Thivi_4084 PF04539 Sigma-70 region 3 Thivi_4087 PF07690 Major Facilitator Superfamily Thivi_4089 PF01734 Patatin-like phospholipase Thivi_4094 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thivi_4096 PF00375 Sodium:dicarboxylate symporter family Thivi_4098 PF02590 Predicted SPOUT methyltransferase Thivi_4099 PF02545 Maf-like protein Thivi_4100 PF00575 S1 RNA binding domain Thivi_4100 PF10150 Ribonuclease E/G family Thivi_4102 PF00795 Carbon-nitrogen hydrolase Thivi_4103 PF01523 Putative modulator of DNA gyrase Thivi_4104 PF04851 Type III restriction enzyme, res subunit Thivi_4104 PF00271 Helicase conserved C-terminal domain Thivi_4106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4106 PF05231 MASE1 Thivi_4106 PF07730 Histidine kinase Thivi_4107 PF00196 Bacterial regulatory proteins, luxR family Thivi_4107 PF00072 Response regulator receiver domain Thivi_4108 PF08448 PAS fold Thivi_4108 PF00990 Diguanylate cyclase, GGDEF domain Thivi_4110 PF00196 Bacterial regulatory proteins, luxR family Thivi_4110 PF00072 Response regulator receiver domain Thivi_4111 PF00672 HAMP domain Thivi_4111 PF02743 Cache domain Thivi_4111 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_4112 PF00072 Response regulator receiver domain Thivi_4112 PF00486 Transcriptional regulatory protein, C terminal Thivi_4114 PF01627 Hpt domain Thivi_4114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4114 PF02895 Signal transducing histidine kinase, homodimeric domain Thivi_4114 PF01584 CheW-like domain Thivi_4116 PF01584 CheW-like domain Thivi_4117 PF00672 HAMP domain Thivi_4117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_4117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thivi_4117 PF17200 Single Cache domain 2 Thivi_4117 PF00672 HAMP domain Thivi_4117 PF17200 Single Cache domain 2 Thivi_4118 PF01584 CheW-like domain Thivi_4119 PF03705 CheR methyltransferase, all-alpha domain Thivi_4119 PF01739 CheR methyltransferase, SAM binding domain Thivi_4120 PF03975 CheD chemotactic sensory transduction Thivi_4121 PF01339 CheB methylesterase Thivi_4121 PF00072 Response regulator receiver domain Thivi_4122 PF00563 EAL domain Thivi_4122 PF13188 PAS domain Thivi_4122 PF00990 Diguanylate cyclase, GGDEF domain Thivi_4122 PF03707 Bacterial signalling protein N terminal repeat Thivi_4124 PF01523 Putative modulator of DNA gyrase Thivi_4128 PF00282 Pyridoxal-dependent decarboxylase conserved domain Thivi_4133 PF01555 DNA methylase Thivi_4133 PF18273 Type III R-M EcoP15I C-terminal domain Thivi_4139 PF01523 Putative modulator of DNA gyrase Thivi_4144 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Thivi_4146 PF00563 EAL domain Thivi_4146 PF00990 Diguanylate cyclase, GGDEF domain Thivi_4146 PF03707 Bacterial signalling protein N terminal repeat Thivi_4147 PF08668 HDOD domain Thivi_4149 PF01259 SAICAR synthetase Thivi_4151 PF01042 Endoribonuclease L-PSP Thivi_4152 PF13406 Transglycosylase SLT domain Thivi_4153 PF01894 Uncharacterised protein family UPF0047 Thivi_4154 PF00271 Helicase conserved C-terminal domain Thivi_4154 PF00270 DEAD/DEAH box helicase Thivi_4154 PF17191 RecG wedge domain Thivi_4155 PF01040 UbiA prenyltransferase family Thivi_4156 PF01323 DSBA-like thioredoxin domain Thivi_4163 PF00072 Response regulator receiver domain Thivi_4164 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_4164 PF00072 Response regulator receiver domain Thivi_4164 PF01627 Hpt domain Thivi_4164 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4164 PF00672 HAMP domain Thivi_4165 PF00899 ThiF family Thivi_4172 PF05175 Methyltransferase small domain Thivi_4172 PF17827 PrmC N-terminal domain Thivi_4173 PF03462 PCRF domain Thivi_4173 PF00472 RF-1 domain Thivi_4174 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Thivi_4174 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Thivi_4174 PF01488 Shikimate / quinate 5-dehydrogenase Thivi_4176 PF00288 GHMP kinases N terminal domain Thivi_4176 PF08544 GHMP kinases C terminal Thivi_4178 PF14572 Phosphoribosyl synthetase-associated domain Thivi_4178 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thivi_4179 PF14693 Ribosomal protein TL5, C-terminal domain Thivi_4179 PF01386 Ribosomal L25p family Thivi_4180 PF01195 Peptidyl-tRNA hydrolase Thivi_4182 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thivi_4182 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thivi_4182 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thivi_4186 PF00009 Elongation factor Tu GTP binding domain Thivi_4186 PF03143 Elongation factor Tu C-terminal domain Thivi_4186 PF03144 Elongation factor Tu domain 2 Thivi_4188 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Thivi_4189 PF02357 Transcription termination factor nusG Thivi_4189 PF00467 KOW motif Thivi_4190 PF00298 Ribosomal protein L11, RNA binding domain Thivi_4190 PF03946 Ribosomal protein L11, N-terminal domain Thivi_4191 PF00687 Ribosomal protein L1p/L10e family Thivi_4192 PF00466 Ribosomal protein L10 Thivi_4193 PF16320 Ribosomal protein L7/L12 dimerisation domain Thivi_4193 PF00542 Ribosomal protein L7/L12 C-terminal domain Thivi_4194 PF00562 RNA polymerase Rpb2, domain 6 Thivi_4194 PF04563 RNA polymerase beta subunit Thivi_4194 PF04561 RNA polymerase Rpb2, domain 2 Thivi_4194 PF04565 RNA polymerase Rpb2, domain 3 Thivi_4194 PF04560 RNA polymerase Rpb2, domain 7 Thivi_4194 PF10385 RNA polymerase beta subunit external 1 domain Thivi_4195 PF04998 RNA polymerase Rpb1, domain 5 Thivi_4195 PF04997 RNA polymerase Rpb1, domain 1 Thivi_4195 PF00623 RNA polymerase Rpb1, domain 2 Thivi_4195 PF04983 RNA polymerase Rpb1, domain 3 Thivi_4195 PF05000 RNA polymerase Rpb1, domain 4 Thivi_4196 PF00164 Ribosomal protein S12/S23 Thivi_4197 PF00177 Ribosomal protein S7p/S5e Thivi_4198 PF00009 Elongation factor Tu GTP binding domain Thivi_4198 PF03144 Elongation factor Tu domain 2 Thivi_4198 PF00679 Elongation factor G C-terminus Thivi_4198 PF14492 Elongation Factor G, domain II Thivi_4198 PF03764 Elongation factor G, domain IV Thivi_4199 PF00009 Elongation factor Tu GTP binding domain Thivi_4199 PF03144 Elongation factor Tu domain 2 Thivi_4199 PF03143 Elongation factor Tu C-terminal domain Thivi_4200 PF00338 Ribosomal protein S10p/S20e Thivi_4201 PF00297 Ribosomal protein L3 Thivi_4203 PF00276 Ribosomal protein L23 Thivi_4204 PF03947 Ribosomal Proteins L2, C-terminal domain Thivi_4204 PF00181 Ribosomal Proteins L2, RNA binding domain Thivi_4205 PF00203 Ribosomal protein S19 Thivi_4206 PF00237 Ribosomal protein L22p/L17e Thivi_4207 PF00189 Ribosomal protein S3, C-terminal domain Thivi_4207 PF07650 KH domain Thivi_4208 PF00252 Ribosomal protein L16p/L10e Thivi_4209 PF00831 Ribosomal L29 protein Thivi_4210 PF00366 Ribosomal protein S17 Thivi_4211 PF00238 Ribosomal protein L14p/L23e Thivi_4212 PF00467 KOW motif Thivi_4212 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thivi_4213 PF00281 Ribosomal protein L5 Thivi_4213 PF00673 ribosomal L5P family C-terminus Thivi_4214 PF00253 Ribosomal protein S14p/S29e Thivi_4215 PF00410 Ribosomal protein S8 Thivi_4216 PF00347 Ribosomal protein L6 Thivi_4217 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thivi_4218 PF00333 Ribosomal protein S5, N-terminal domain Thivi_4218 PF03719 Ribosomal protein S5, C-terminal domain Thivi_4219 PF00327 Ribosomal protein L30p/L7e Thivi_4220 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Thivi_4221 PF00344 SecY translocase Thivi_4222 PF00444 Ribosomal protein L36 Thivi_4223 PF00416 Ribosomal protein S13/S18 Thivi_4224 PF00411 Ribosomal protein S11 Thivi_4225 PF00163 Ribosomal protein S4/S9 N-terminal domain Thivi_4225 PF01479 S4 domain Thivi_4226 PF01000 RNA polymerase Rpb3/RpoA insert domain Thivi_4226 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thivi_4226 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thivi_4227 PF01196 Ribosomal protein L17 Thivi_4230 PF02151 UvrB/uvrC motif Thivi_4230 PF08459 UvrC Helix-hairpin-helix N-terminal Thivi_4230 PF01541 GIY-YIG catalytic domain Thivi_4230 PF12826 Helix-hairpin-helix motif Thivi_4232 PF12627 Probable RNA and SrmB- binding site of polymerase A Thivi_4232 PF01743 Poly A polymerase head domain Thivi_4232 PF01966 HD domain Thivi_4233 PF00563 EAL domain Thivi_4233 PF00990 Diguanylate cyclase, GGDEF domain Thivi_4233 PF03707 Bacterial signalling protein N terminal repeat Thivi_4237 PF08406 CbbQ/NirQ/NorQ C-terminal Thivi_4237 PF07728 AAA domain (dynein-related subfamily) Thivi_4238 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thivi_4238 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Thivi_4239 PF13609 Gram-negative porin Thivi_4240 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Thivi_4241 PF03264 NapC/NirT cytochrome c family, N-terminal region Thivi_4242 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Thivi_4243 PF12801 4Fe-4S binding domain Thivi_4243 PF13237 4Fe-4S dicluster domain Thivi_4244 PF12838 4Fe-4S dicluster domain Thivi_4244 PF12800 4Fe-4S binding domain Thivi_4245 PF01568 Molydopterin dinucleotide binding domain Thivi_4245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thivi_4245 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thivi_4245 PF00384 Molybdopterin oxidoreductase Thivi_4248 PF07730 Histidine kinase Thivi_4248 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Thivi_4248 PF00672 HAMP domain Thivi_4248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4249 PF00196 Bacterial regulatory proteins, luxR family Thivi_4249 PF00072 Response regulator receiver domain Thivi_4250 PF13537 Glutamine amidotransferase domain Thivi_4250 PF00733 Asparagine synthase Thivi_4254 PF01522 Polysaccharide deacetylase Thivi_4256 PF13614 AAA domain Thivi_4258 PF02563 Polysaccharide biosynthesis/export protein Thivi_4259 PF00158 Sigma-54 interaction domain Thivi_4259 PF00072 Response regulator receiver domain Thivi_4259 PF02954 Bacterial regulatory protein, Fis family Thivi_4260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4260 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4261 PF13401 AAA domain Thivi_4261 PF01471 Putative peptidoglycan binding domain Thivi_4271 PF01609 Transposase DDE domain Thivi_4271 PF13808 DDE_Tnp_1-associated Thivi_4273 PF14461 Prokaryotic E2 family B Thivi_4273 PF00899 ThiF family Thivi_4276 PF13180 PDZ domain Thivi_4277 PF00158 Sigma-54 interaction domain Thivi_4277 PF13185 GAF domain Thivi_4277 PF02954 Bacterial regulatory protein, Fis family Thivi_4279 PF02397 Bacterial sugar transferase Thivi_4283 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thivi_4283 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thivi_4283 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thivi_4284 PF02350 UDP-N-acetylglucosamine 2-epimerase Thivi_4287 PF00682 HMGL-like Thivi_4292 PF03206 Nitrogen fixation protein NifW Thivi_4293 PF04319 NifZ domain Thivi_4294 PF00639 PPIC-type PPIASE domain Thivi_4295 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_4295 PF06689 ClpX C4-type zinc finger Thivi_4295 PF07724 AAA domain (Cdc48 subfamily) Thivi_4296 PF00849 RNA pseudouridylate synthase Thivi_4296 PF01479 S4 domain Thivi_4298 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_4298 PF16193 AAA C-terminal domain Thivi_4298 PF12002 MgsA AAA+ ATPase C terminal Thivi_4299 PF03548 Outer membrane lipoprotein carrier protein LolA Thivi_4301 PF17854 FtsK alpha domain Thivi_4301 PF09397 Ftsk gamma domain Thivi_4301 PF01580 FtsK/SpoIIIE family Thivi_4301 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thivi_4302 PF09397 Ftsk gamma domain Thivi_4302 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thivi_4302 PF01580 FtsK/SpoIIIE family Thivi_4302 PF17854 FtsK alpha domain Thivi_4303 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4303 PF16736 Single Cache-like Thivi_4303 PF00989 PAS fold Thivi_4304 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4304 PF00672 HAMP domain Thivi_4304 PF01627 Hpt domain Thivi_4304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4304 PF00072 Response regulator receiver domain Thivi_4304 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thivi_4305 PF00313 'Cold-shock' DNA-binding domain Thivi_4306 PF00814 Glycoprotease family Thivi_4308 PF00294 pfkB family carbohydrate kinase Thivi_4311 PF00664 ABC transporter transmembrane region Thivi_4311 PF00005 ABC transporter Thivi_4312 PF00664 ABC transporter transmembrane region Thivi_4312 PF00005 ABC transporter Thivi_4313 PF05685 Putative restriction endonuclease Thivi_4316 PF05816 Toxic anion resistance protein (TelA) Thivi_4317 PF00886 Ribosomal protein S16 Thivi_4318 PF05239 PRC-barrel domain Thivi_4318 PF01782 RimM N-terminal domain Thivi_4319 PF01746 tRNA (Guanine-1)-methyltransferase Thivi_4320 PF01245 Ribosomal protein L19 Thivi_4321 PF00929 Exonuclease Thivi_4321 PF08411 Exonuclease C-terminal Thivi_4322 PF18389 TrmO C-terminal domain Thivi_4322 PF01980 tRNA-methyltransferase O Thivi_4323 PF01938 TRAM domain Thivi_4323 PF05958 tRNA (Uracil-5-)-methyltransferase Thivi_4326 PF03734 L,D-transpeptidase catalytic domain Thivi_4326 PF01476 LysM domain Thivi_4327 PF00483 Nucleotidyl transferase Thivi_4328 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Thivi_4328 PF01676 Metalloenzyme superfamily Thivi_4329 PF00303 Thymidylate synthase Thivi_4332 PF04055 Radical SAM superfamily Thivi_4332 PF06968 Biotin and Thiamin Synthesis associated domain Thivi_4332 PF00202 Aminotransferase class-III Thivi_4335 PF00486 Transcriptional regulatory protein, C terminal Thivi_4335 PF00072 Response regulator receiver domain Thivi_4336 PF08918 PhoQ Sensor Thivi_4336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4337 PF01555 DNA methylase Thivi_4337 PF18273 Type III R-M EcoP15I C-terminal domain Thivi_4341 PF04221 RelB antitoxin Thivi_4342 PF04851 Type III restriction enzyme, res subunit Thivi_4342 PF08774 VRR-NUC domain Thivi_4343 PF16363 GDP-mannose 4,6 dehydratase Thivi_4345 PF03937 Flavinator of succinate dehydrogenase Thivi_4347 PF13085 2Fe-2S iron-sulfur cluster binding domain Thivi_4349 PF02910 Fumarate reductase flavoprotein C-term Thivi_4349 PF00890 FAD binding domain Thivi_4350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Thivi_4353 PF00204 DNA gyrase B Thivi_4353 PF00986 DNA gyrase B subunit, carboxyl terminus Thivi_4353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4353 PF01751 Toprim domain Thivi_4354 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Thivi_4354 PF02769 AIR synthase related protein, C-terminal domain Thivi_4354 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thivi_4356 PF00072 Response regulator receiver domain Thivi_4357 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Thivi_4358 PF01750 Hydrogenase maturation protease Thivi_4361 PF08443 RimK-like ATP-grasp domain Thivi_4361 PF18030 RimK PreATP-grasp domain Thivi_4364 PF00873 AcrB/AcrD/AcrF family Thivi_4365 PF08459 UvrC Helix-hairpin-helix N-terminal Thivi_4365 PF02151 UvrB/uvrC motif Thivi_4365 PF01541 GIY-YIG catalytic domain Thivi_4366 PF01066 CDP-alcohol phosphatidyltransferase Thivi_4374 PF00239 Resolvase, N terminal domain Thivi_4374 PF02796 Helix-turn-helix domain of resolvase Thivi_4379 PF00665 Integrase core domain Thivi_4379 PF13276 HTH-like domain Thivi_4379 PF13333 Integrase core domain Thivi_4401 PF00216 Bacterial DNA-binding protein Thivi_4410 PF10549 ORF11CD3 domain Thivi_4410 PF09669 Phage regulatory protein Rha (Phage_pRha) Thivi_4423 PF04233 Phage Mu protein F like protein Thivi_4449 PF00156 Phosphoribosyl transferase domain Thivi_4450 PF01048 Phosphorylase superfamily Thivi_4453 PF00158 Sigma-54 interaction domain Thivi_4453 PF00072 Response regulator receiver domain Thivi_4453 PF02954 Bacterial regulatory protein, Fis family Thivi_4454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4454 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4454 PF00989 PAS fold Thivi_4463 PF08521 Two-component sensor kinase N-terminal Thivi_4463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4463 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4464 PF00486 Transcriptional regulatory protein, C terminal Thivi_4464 PF00072 Response regulator receiver domain Thivi_4465 PF01545 Cation efflux family Thivi_4465 PF16916 Dimerisation domain of Zinc Transporter Thivi_4469 PF00042 Globin Thivi_4469 PF00175 Oxidoreductase NAD-binding domain Thivi_4469 PF00970 Oxidoreductase FAD-binding domain Thivi_4474 PF00072 Response regulator receiver domain Thivi_4474 PF00486 Transcriptional regulatory protein, C terminal Thivi_4475 PF00512 His Kinase A (phospho-acceptor) domain Thivi_4475 PF00672 HAMP domain Thivi_4475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thivi_4476 PF00756 Putative esterase Thivi_4477 PF08351 Domain of unknown function (DUF1726) Thivi_4477 PF13718 GNAT acetyltransferase 2 Thivi_4477 PF05127 Helicase Thivi_4477 PF17176 tRNA-binding domain Thivi_4480 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_4480 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thivi_4480 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thivi_4483 PF03264 NapC/NirT cytochrome c family, N-terminal region Thivi_4486 PF00534 Glycosyl transferases group 1 Thivi_4486 PF08323 Starch synthase catalytic domain Thivi_4487 PF06470 SMC proteins Flexible Hinge Domain Thivi_4487 PF02463 RecF/RecN/SMC N terminal domain Thivi_4488 PF04354 ZipA, C-terminal FtsZ-binding domain Thivi_4489 PF03120 NAD-dependent DNA ligase OB-fold domain Thivi_4489 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thivi_4489 PF01653 NAD-dependent DNA ligase adenylation domain Thivi_4489 PF00533 BRCA1 C Terminus (BRCT) domain Thivi_4489 PF12826 Helix-hairpin-helix motif Thivi_4491 PF00194 Eukaryotic-type carbonic anhydrase Thivi_4494 PF00141 Peroxidase Thivi_4497 PF00232 Glycosyl hydrolase family 1 Thivi_4498 PF00005 ABC transporter Thivi_4498 PF06472 ABC transporter transmembrane region 2 Thivi_4500 PF00483 Nucleotidyl transferase Thivi_4505 PF00990 Diguanylate cyclase, GGDEF domain Thivi_4506 PF05199 GMC oxidoreductase Thivi_4506 PF00732 GMC oxidoreductase Thivi_4507 PF11756 Nitrous oxide-stimulated promoter Thivi_4510 PF01609 Transposase DDE domain Thivi_4510 PF13808 DDE_Tnp_1-associated Thivi_4511 PF13808 DDE_Tnp_1-associated Thivi_4511 PF01609 Transposase DDE domain Thivi_4514 PF01867 CRISPR associated protein Cas1 Thivi_4515 PF05685 Putative restriction endonuclease Thivi_4525 PF05683 Fumarase C-terminus Thivi_4525 PF05681 Fumarate hydratase (Fumerase) Thivi_4526 PF04337 Protein of unknown function, DUF480 Thivi_4527 PF18693 TRAM domain Thivi_4527 PF04055 Radical SAM superfamily Thivi_4527 PF00919 Uncharacterized protein family UPF0004 Thivi_4529 PF02401 LytB protein Thivi_4531 PF00384 Molybdopterin oxidoreductase Thivi_4531 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thivi_4531 PF01568 Molydopterin dinucleotide binding domain Thivi_4532 PF12800 4Fe-4S binding domain Thivi_4532 PF13247 4Fe-4S dicluster domain Thivi_4533 PF04976 DMSO reductase anchor subunit (DmsC) Thivi_4535 PF00657 GDSL-like Lipase/Acylhydrolase Thivi_4535 PF03797 Autotransporter beta-domain Thivi_4543 PF03793 PASTA domain Thivi_4543 PF00069 Protein kinase domain Thivi_4544 PF04356 Protein of unknown function (DUF489) Thivi_4547 PF00561 alpha/beta hydrolase fold Thivi_4549 PF01875 Memo-like protein Thivi_4550 PF00114 Pilin (bacterial filament) Thivi_4550 PF07963 Prokaryotic N-terminal methylation motif Thivi_4552 PF01464 Transglycosylase SLT domain Thivi_4552 PF14718 Soluble lytic murein transglycosylase L domain Thivi_4554 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thivi_4556 PF01925 Sulfite exporter TauE/SafE Thivi_4559 PF00873 AcrB/AcrD/AcrF family Thivi_4560 PF13533 Biotin-lipoyl like Thivi_4561 PF01209 ubiE/COQ5 methyltransferase family Thivi_4562 PF03989 DNA gyrase C-terminal domain, beta-propeller Thivi_4562 PF00521 DNA gyrase/topoisomerase IV, subunit A Thivi_4564 PF08331 Domain of unknown function (DUF1730) Thivi_4567 PF00361 Proton-conducting membrane transporter Thivi_4570 PF12137 RNA polymerase recycling family C-terminal Thivi_4570 PF00271 Helicase conserved C-terminal domain Thivi_4570 PF18337 RapA N-terminal Tudor like domain Thivi_4570 PF00176 SNF2 family N-terminal domain Thivi_4570 PF18339 RapA N-terminal Tudor like domain 1 Thivi_4572 PF00180 Isocitrate/isopropylmalate dehydrogenase Thivi_4573 PF00313 'Cold-shock' DNA-binding domain Thivi_4574 PF02617 ATP-dependent Clp protease adaptor protein ClpS Thivi_4575 PF00004 ATPase family associated with various cellular activities (AAA) Thivi_4575 PF07724 AAA domain (Cdc48 subfamily) Thivi_4575 PF17871 AAA lid domain Thivi_4575 PF02861 Clp amino terminal domain, pathogenicity island component Thivi_4575 PF10431 C-terminal, D2-small domain, of ClpB protein Thivi_4578 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thivi_4578 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thivi_4579 PF00462 Glutaredoxin Thivi_4579 PF08534 Redoxin Thivi_4581 PF02685 Glucokinase Thivi_4582 PF00403 Heavy-metal-associated domain Thivi_4583 PF01103 Surface antigen Thivi_4583 PF17243 POTRA domain TamA domain 1 Thivi_4583 PF07244 Surface antigen variable number repeat Thivi_4584 PF04357 TamB, inner membrane protein subunit of TAM complex Thivi_4585 PF03279 Bacterial lipid A biosynthesis acyltransferase Thivi_4587 PF03976 Polyphosphate kinase 2 (PPK2) Thivi_4589 PF01037 Lrp/AsnC ligand binding domain Thivi_4590 PF08502 LeuA allosteric (dimerisation) domain Thivi_4590 PF00682 HMGL-like Thivi_4592 PF11871 Domain of unknown function (DUF3391) Thivi_4592 PF01966 HD domain Thivi_4593 PF02463 RecF/RecN/SMC N terminal domain Thivi_4594 PF01513 ATP-NAD kinase Thivi_4595 PF01628 HrcA protein C terminal domain Thivi_4595 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Thivi_4596 PF01025 GrpE Thivi_4597 PF00012 Hsp70 protein Thivi_4598 PF01556 DnaJ C terminal domain Thivi_4598 PF00684 DnaJ central domain Thivi_4598 PF00226 DnaJ domain Thivi_4599 PF05173 Dihydrodipicolinate reductase, C-terminus Thivi_4599 PF01113 Dihydrodipicolinate reductase, N-terminus Thivi_4605 PF06114 IrrE N-terminal-like domain Thivi_4611 PF00271 Helicase conserved C-terminal domain Thivi_4611 PF04851 Type III restriction enzyme, res subunit Thivi_4621 PF00589 Phage integrase family Thivi_4621 PF13356 Arm DNA-binding domain Thivi_4622 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thivi_4622 PF01464 Transglycosylase SLT domain Thivi_4623 PF02545 Maf-like protein Thivi_4625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thivi_4625 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thivi_4626 PF00128 Alpha amylase, catalytic domain Thivi_4626 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thivi_4628 PF00266 Aminotransferase class-V Thivi_4630 PF00149 Calcineurin-like phosphoesterase Thivi_4631 PF13514 AAA domain