Thivi_0007 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_0007 SM00732 Likely ribonuclease with RNase H fold. Thivi_0017 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thivi_0018 SM00822 Thivi_0018 Thivi_0020 SM00825 Beta-ketoacyl synthase Thivi_0032 SM00448 cheY-homologous receiver domain Thivi_0032 SM00862 Transcriptional regulatory protein, C terminal Thivi_0033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0033 SM00387 Histidine kinase-like ATPases Thivi_0033 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0034 SM00054 EF-hand, calcium binding motif Thivi_0036 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0038 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_0038 SM00387 Histidine kinase-like ATPases Thivi_0038 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0039 SM00052 Putative diguanylate phosphodiesterase Thivi_0039 SM00267 diguanylate cyclase Thivi_0039 SM00448 cheY-homologous receiver domain Thivi_0046 SM00382 ATPases associated with a variety of cellular activities Thivi_0047 SM00854 Bacterial capsule synthesis protein PGA_cap Thivi_0050 SM00878 Biotin carboxylase C-terminal domain Thivi_0053 SM01091 Transporter associated domain Thivi_0064 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0064 SM00091 PAS domain Thivi_0064 SM00387 Histidine kinase-like ATPases Thivi_0064 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0064 SM00448 cheY-homologous receiver domain Thivi_0065 SM00267 diguanylate cyclase Thivi_0065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0069 SM00900 Thivi_0069 Thivi_0076 SM00387 Histidine kinase-like ATPases Thivi_0076 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0106 SM00487 DEAD-like helicases superfamily Thivi_0106 SM00490 helicase superfamily c-terminal domain Thivi_0125 SM00382 ATPases associated with a variety of cellular activities Thivi_0139 SM00028 Tetratricopeptide repeats Thivi_0155 SM00460 Transglutaminase/protease-like homologues Thivi_0162 SM00867 YceI-like domain Thivi_0166 SM00671 Sel1-like repeats. Thivi_0174 SM00530 Helix-turn-helix XRE-family like proteins Thivi_0184 SM00382 ATPases associated with a variety of cellular activities Thivi_0196 SM00857 Resolvase, N terminal domain Thivi_0201 SM00052 Putative diguanylate phosphodiesterase Thivi_0201 SM00091 PAS domain Thivi_0201 SM00267 diguanylate cyclase Thivi_0201 SM00448 cheY-homologous receiver domain Thivi_0204 SM00704 CDGSH-type zinc finger. Function unknown. Thivi_0205 SM00244 prohibitin homologues Thivi_0214 SM00829 Enoylreductase Thivi_0220 SM00052 Putative diguanylate phosphodiesterase Thivi_0220 SM00091 PAS domain Thivi_0222 SM00841 Elongation factor P, C-terminal Thivi_0222 SM01185 Thivi_0222 Thivi_0231 SM00763 PrkA AAA domain Thivi_0242 SM00382 ATPases associated with a variety of cellular activities Thivi_0245 SM00479 Thivi_0245 Thivi_0246 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_0250 SM00917 LeuA allosteric (dimerisation) domain Thivi_0261 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_0262 SM00382 ATPases associated with a variety of cellular activities Thivi_0267 SM01322 Thivi_0267 Thivi_0273 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Thivi_0273 SM00474 3'-5' exonuclease Thivi_0273 SM00475 5'-3' exonuclease Thivi_0273 SM00479 Thivi_0273 Thivi_0273 SM00482 DNA polymerase A domain Thivi_0286 SM00382 ATPases associated with a variety of cellular activities Thivi_0287 SM01248 Thivi_0287 Thivi_0288 SM01248 Thivi_0288 Thivi_0289 SM00091 PAS domain Thivi_0289 SM00387 Histidine kinase-like ATPases Thivi_0289 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0289 SM00448 cheY-homologous receiver domain Thivi_0290 SM00421 helix_turn_helix, Lux Regulon Thivi_0290 SM00448 cheY-homologous receiver domain Thivi_0292 SM00487 DEAD-like helicases superfamily Thivi_0292 SM00490 helicase superfamily c-terminal domain Thivi_0294 SM00448 cheY-homologous receiver domain Thivi_0294 SM00862 Transcriptional regulatory protein, C terminal Thivi_0295 SM00091 PAS domain Thivi_0295 SM00387 Histidine kinase-like ATPases Thivi_0295 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0300 SM00411 bacterial (prokaryotic) histone like domain Thivi_0301 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_0307 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0308 SM00448 cheY-homologous receiver domain Thivi_0310 SM00073 Histidine Phosphotransfer domain Thivi_0310 SM00260 Two component signalling adaptor domain Thivi_0310 SM00387 Histidine kinase-like ATPases Thivi_0310 SM01231 Thivi_0310 Thivi_0311 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0311 SM01358 Thivi_0311 Thivi_0312 SM00260 Two component signalling adaptor domain Thivi_0314 SM00448 cheY-homologous receiver domain Thivi_0316 SM00091 PAS domain Thivi_0316 SM00267 diguanylate cyclase Thivi_0317 SM00073 Histidine Phosphotransfer domain Thivi_0317 SM00260 Two component signalling adaptor domain Thivi_0317 SM00387 Histidine kinase-like ATPases Thivi_0317 SM01231 Thivi_0317 Thivi_0318 SM00138 Methyltransferase, chemotaxis proteins Thivi_0320 SM00448 cheY-homologous receiver domain Thivi_0321 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0322 SM00260 Two component signalling adaptor domain Thivi_0323 SM00448 cheY-homologous receiver domain Thivi_0324 SM00567 E-Z type HEAT repeats Thivi_0325 SM00138 Methyltransferase, chemotaxis proteins Thivi_0326 SM00448 cheY-homologous receiver domain Thivi_0327 SM00073 Histidine Phosphotransfer domain Thivi_0327 SM00260 Two component signalling adaptor domain Thivi_0327 SM00387 Histidine kinase-like ATPases Thivi_0327 SM01231 Thivi_0327 Thivi_0329 SM00448 cheY-homologous receiver domain Thivi_0330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0333 SM00387 Histidine kinase-like ATPases Thivi_0335 SM00331 Sigma factor PP2C-like phosphatases Thivi_0336 SM00387 Histidine kinase-like ATPases Thivi_0336 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0337 SM00448 cheY-homologous receiver domain Thivi_0339 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0339 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0356 SM00382 ATPases associated with a variety of cellular activities Thivi_0373 SM00382 ATPases associated with a variety of cellular activities Thivi_0373 SM00962 SRP54-type protein, GTPase domain Thivi_0376 SM00448 cheY-homologous receiver domain Thivi_0380 SM00073 Histidine Phosphotransfer domain Thivi_0380 SM00260 Two component signalling adaptor domain Thivi_0380 SM00387 Histidine kinase-like ATPases Thivi_0380 SM01231 Thivi_0380 Thivi_0381 SM00448 cheY-homologous receiver domain Thivi_0384 SM00260 Two component signalling adaptor domain Thivi_0391 SM00858 Thivi_0391 Thivi_0392 SM00260 Two component signalling adaptor domain Thivi_0392 SM00448 cheY-homologous receiver domain Thivi_0393 SM00138 Methyltransferase, chemotaxis proteins Thivi_0403 SM00047 Lysozyme subfamily 2 Thivi_0411 SM00244 prohibitin homologues Thivi_0412 SM00244 prohibitin homologues Thivi_0413 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0413 SM00091 PAS domain Thivi_0413 SM00387 Histidine kinase-like ATPases Thivi_0413 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0413 SM00448 cheY-homologous receiver domain Thivi_0416 SM00788 Adenylosuccinate synthetase Thivi_0418 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0418 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0430 SM00530 Helix-turn-helix XRE-family like proteins Thivi_0439 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0439 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0439 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0461 SM01101 Thivi_0461 Thivi_0476 SM00382 ATPases associated with a variety of cellular activities Thivi_0480 SM00463 Small MutS-related domain Thivi_0483 SM00257 Lysin motif Thivi_0489 SM00834 Putative regulatory protein Thivi_0502 SM00131 BPTI/Kunitz family of serine protease inhibitors. Thivi_0512 SM00382 ATPases associated with a variety of cellular activities Thivi_0515 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thivi_0516 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_0516 SM00357 Cold shock protein domain Thivi_0516 SM00955 Thivi_0516 Thivi_0523 SM00671 Sel1-like repeats. Thivi_0527 SM00382 ATPases associated with a variety of cellular activities Thivi_0529 SM00052 Putative diguanylate phosphodiesterase Thivi_0529 SM00267 diguanylate cyclase Thivi_0530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0533 SM00822 Thivi_0533 Thivi_0535 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Thivi_0557 SM00257 Lysin motif Thivi_0559 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0559 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0560 SM00448 cheY-homologous receiver domain Thivi_0560 SM00862 Transcriptional regulatory protein, C terminal Thivi_0561 SM00052 Putative diguanylate phosphodiesterase Thivi_0561 SM00448 cheY-homologous receiver domain Thivi_0562 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_0562 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0562 SM00091 PAS domain Thivi_0562 SM00387 Histidine kinase-like ATPases Thivi_0562 SM00448 cheY-homologous receiver domain Thivi_0563 SM00448 cheY-homologous receiver domain Thivi_0574 SM00382 ATPases associated with a variety of cellular activities Thivi_0576 SM00382 ATPases associated with a variety of cellular activities Thivi_0579 SM00327 von Willebrand factor (vWF) type A domain Thivi_0585 SM00382 ATPases associated with a variety of cellular activities Thivi_0591 SM00487 DEAD-like helicases superfamily Thivi_0599 SM00881 CoA binding domain Thivi_0605 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_0606 SM00838 Elongation factor G C-terminus Thivi_0609 SM00358 Double-stranded RNA binding motif Thivi_0609 SM00535 Ribonuclease III family Thivi_0614 SM00060 Fibronectin type 3 domain Thivi_0617 SM01103 Thivi_0617 Thivi_0619 SM00387 Histidine kinase-like ATPases Thivi_0626 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_0629 SM00382 ATPases associated with a variety of cellular activities Thivi_0629 SM00994 ClpX C4-type zinc finger Thivi_0629 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_0630 SM00382 ATPases associated with a variety of cellular activities Thivi_0630 SM00464 Found in ATP-dependent protease La (LON) Thivi_0631 SM00411 bacterial (prokaryotic) histone like domain Thivi_0635 SM00893 Electron transfer flavoprotein domain Thivi_0636 SM00893 Electron transfer flavoprotein domain Thivi_0638 SM00327 von Willebrand factor (vWF) type A domain Thivi_0642 SM00267 diguanylate cyclase Thivi_0643 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_0644 SM00387 Histidine kinase-like ATPases Thivi_0644 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0644 SM00448 cheY-homologous receiver domain Thivi_0645 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_0646 SM00448 cheY-homologous receiver domain Thivi_0647 SM00387 Histidine kinase-like ATPases Thivi_0647 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0647 SM00448 cheY-homologous receiver domain Thivi_0648 SM00052 Putative diguanylate phosphodiesterase Thivi_0648 SM00267 diguanylate cyclase Thivi_0648 SM00448 cheY-homologous receiver domain Thivi_0649 SM00073 Histidine Phosphotransfer domain Thivi_0653 SM00382 ATPases associated with a variety of cellular activities Thivi_0660 SM00883 Chaperonin 10 Kd subunit Thivi_0672 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thivi_0673 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_0673 SM00073 Histidine Phosphotransfer domain Thivi_0673 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0673 SM00091 PAS domain Thivi_0673 SM00387 Histidine kinase-like ATPases Thivi_0673 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0673 SM00448 cheY-homologous receiver domain Thivi_0681 SM00487 DEAD-like helicases superfamily Thivi_0681 SM00490 helicase superfamily c-terminal domain Thivi_0682 SM00360 RNA recognition motif Thivi_0683 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_0693 SM00073 Histidine Phosphotransfer domain Thivi_0693 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0693 SM00091 PAS domain Thivi_0693 SM00387 Histidine kinase-like ATPases Thivi_0693 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0693 SM00448 cheY-homologous receiver domain Thivi_0693 SM01049 Thivi_0693 Thivi_0694 SM00267 diguanylate cyclase Thivi_0694 SM00448 cheY-homologous receiver domain Thivi_0695 SM00052 Putative diguanylate phosphodiesterase Thivi_0695 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_0695 SM00091 PAS domain Thivi_0695 SM00267 diguanylate cyclase Thivi_0695 SM01079 Thivi_0695 Thivi_0702 SM00267 diguanylate cyclase Thivi_0704 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_0706 SM00091 PAS domain Thivi_0706 SM00267 diguanylate cyclase Thivi_0706 SM00387 Histidine kinase-like ATPases Thivi_0706 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0706 SM00448 cheY-homologous receiver domain Thivi_0711 SM00883 Chaperonin 10 Kd subunit Thivi_0714 SM00966 SpoVT / AbrB like domain Thivi_0721 SM00849 Metallo-beta-lactamase superfamily Thivi_0724 SM00382 ATPases associated with a variety of cellular activities Thivi_0730 SM00363 S4 RNA-binding domain Thivi_0734 SM00849 Metallo-beta-lactamase superfamily Thivi_0740 SM01068 Putative carbohydrate binding domain Thivi_0744 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thivi_0746 SM00382 ATPases associated with a variety of cellular activities Thivi_0749 SM00220 Serine/Threonine protein kinases, catalytic domain Thivi_0759 SM00382 ATPases associated with a variety of cellular activities Thivi_0767 SM00248 ankyrin repeats Thivi_0781 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_0781 SM00387 Histidine kinase-like ATPases Thivi_0781 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0782 SM00448 cheY-homologous receiver domain Thivi_0782 SM00862 Transcriptional regulatory protein, C terminal Thivi_0789 SM00530 Helix-turn-helix XRE-family like proteins Thivi_0797 SM00028 Tetratricopeptide repeats Thivi_0800 SM00671 Sel1-like repeats. Thivi_0819 SM00966 SpoVT / AbrB like domain Thivi_0827 SM00487 DEAD-like helicases superfamily Thivi_0827 SM00490 helicase superfamily c-terminal domain Thivi_0833 SM01321 Thivi_0833 Thivi_0838 SM00977 TilS substrate C-terminal domain Thivi_0847 SM00901 Thivi_0847 Thivi_0849 SM00091 PAS domain Thivi_0849 SM00387 Histidine kinase-like ATPases Thivi_0849 SM00388 His Kinase A (phosphoacceptor) domain Thivi_0850 SM00421 helix_turn_helix, Lux Regulon Thivi_0850 SM00448 cheY-homologous receiver domain Thivi_0851 SM01321 Thivi_0851 Thivi_0868 SM00382 ATPases associated with a variety of cellular activities Thivi_0871 SM00421 helix_turn_helix, Lux Regulon Thivi_0871 SM00448 cheY-homologous receiver domain Thivi_0874 SM00028 Tetratricopeptide repeats Thivi_0874 SM00327 von Willebrand factor (vWF) type A domain Thivi_0877 SM00028 Tetratricopeptide repeats Thivi_0878 SM00028 Tetratricopeptide repeats Thivi_0879 SM00028 Tetratricopeptide repeats Thivi_0880 SM00028 Tetratricopeptide repeats Thivi_0892 SM00014 Acid phosphatase homologues Thivi_0897 SM00955 Thivi_0897 Thivi_0898 SM00382 ATPases associated with a variety of cellular activities Thivi_0921 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thivi_0922 SM01329 Thivi_0922 Thivi_0930 SM00382 ATPases associated with a variety of cellular activities Thivi_0938 SM00382 ATPases associated with a variety of cellular activities Thivi_0947 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_0948 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Thivi_0968 SM00382 ATPases associated with a variety of cellular activities Thivi_0981 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_0988 SM00382 ATPases associated with a variety of cellular activities Thivi_0988 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_1009 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1009 SM00091 PAS domain Thivi_1009 SM00387 Histidine kinase-like ATPases Thivi_1009 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1009 SM00448 cheY-homologous receiver domain Thivi_1010 SM00448 cheY-homologous receiver domain Thivi_1010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1011 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_1064 SM00481 DNA polymerase alpha chain like domain Thivi_1074 SM01101 Thivi_1074 Thivi_1079 SM00487 DEAD-like helicases superfamily Thivi_1086 SM00382 ATPases associated with a variety of cellular activities Thivi_1090 SM00052 Putative diguanylate phosphodiesterase Thivi_1090 SM00240 Forkhead associated domain Thivi_1101 SM00878 Biotin carboxylase C-terminal domain Thivi_1112 SM00798 AICARFT/IMPCHase bienzyme Thivi_1112 SM00851 MGS-like domain Thivi_1115 SM01209 Thivi_1115 Thivi_1115 SM01210 Thivi_1115 Thivi_1116 SM00028 Tetratricopeptide repeats Thivi_1116 SM00448 cheY-homologous receiver domain Thivi_1118 SM00327 von Willebrand factor (vWF) type A domain Thivi_1126 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thivi_1128 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thivi_1152 SM00481 DNA polymerase alpha chain like domain Thivi_1154 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_1154 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_1155 SM00642 Alpha-amylase domain Thivi_1169 SM00382 ATPases associated with a variety of cellular activities Thivi_1175 SM00460 Transglutaminase/protease-like homologues Thivi_1178 SM00226 Low molecular weight phosphatase family Thivi_1181 SM00382 ATPases associated with a variety of cellular activities Thivi_1186 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_1194 SM00530 Helix-turn-helix XRE-family like proteins Thivi_1200 SM00670 Large family of predicted nucleotide-binding domains Thivi_1202 SM00448 cheY-homologous receiver domain Thivi_1202 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1203 SM00387 Histidine kinase-like ATPases Thivi_1203 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1203 SM00448 cheY-homologous receiver domain Thivi_1204 SM00448 cheY-homologous receiver domain Thivi_1205 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_1205 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1205 SM00091 PAS domain Thivi_1205 SM00387 Histidine kinase-like ATPases Thivi_1205 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1205 SM00448 cheY-homologous receiver domain Thivi_1206 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_1206 SM00073 Histidine Phosphotransfer domain Thivi_1206 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1206 SM00091 PAS domain Thivi_1206 SM00387 Histidine kinase-like ATPases Thivi_1206 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1206 SM00448 cheY-homologous receiver domain Thivi_1207 SM00448 cheY-homologous receiver domain Thivi_1207 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1211 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_1211 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_1213 SM00331 Sigma factor PP2C-like phosphatases Thivi_1213 SM00448 cheY-homologous receiver domain Thivi_1215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1215 SM00091 PAS domain Thivi_1215 SM00387 Histidine kinase-like ATPases Thivi_1215 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1215 SM00448 cheY-homologous receiver domain Thivi_1216 SM00448 cheY-homologous receiver domain Thivi_1216 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1217 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1217 SM00091 PAS domain Thivi_1217 SM00387 Histidine kinase-like ATPases Thivi_1217 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1218 SM00448 cheY-homologous receiver domain Thivi_1219 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_1221 SM00138 Methyltransferase, chemotaxis proteins Thivi_1222 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_1222 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_1223 SM00260 Two component signalling adaptor domain Thivi_1224 SM00073 Histidine Phosphotransfer domain Thivi_1224 SM00260 Two component signalling adaptor domain Thivi_1224 SM00387 Histidine kinase-like ATPases Thivi_1224 SM01231 Thivi_1224 Thivi_1225 SM00448 cheY-homologous receiver domain Thivi_1226 SM00487 DEAD-like helicases superfamily Thivi_1226 SM00490 helicase superfamily c-terminal domain Thivi_1226 SM00982 Thivi_1226 Thivi_1226 SM01058 CarD-like/TRCF domain Thivi_1248 SM01321 Thivi_1248 Thivi_1250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1250 SM00091 PAS domain Thivi_1250 SM00267 diguanylate cyclase Thivi_1251 SM00421 helix_turn_helix, Lux Regulon Thivi_1253 SM00382 ATPases associated with a variety of cellular activities Thivi_1253 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_1257 SM00052 Putative diguanylate phosphodiesterase Thivi_1257 SM00267 diguanylate cyclase Thivi_1257 SM00448 cheY-homologous receiver domain Thivi_1259 SM00052 Putative diguanylate phosphodiesterase Thivi_1259 SM00267 diguanylate cyclase Thivi_1259 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_1262 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_1274 SM00267 diguanylate cyclase Thivi_1295 SM01321 Thivi_1295 Thivi_1313 SM00052 Putative diguanylate phosphodiesterase Thivi_1313 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_1313 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1313 SM00448 cheY-homologous receiver domain Thivi_1315 SM00073 Histidine Phosphotransfer domain Thivi_1315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_1315 SM00387 Histidine kinase-like ATPases Thivi_1315 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1315 SM00448 cheY-homologous receiver domain Thivi_1319 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1319 SM00091 PAS domain Thivi_1319 SM00387 Histidine kinase-like ATPases Thivi_1319 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1320 SM00448 cheY-homologous receiver domain Thivi_1321 SM00052 Putative diguanylate phosphodiesterase Thivi_1321 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_1321 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1321 SM00091 PAS domain Thivi_1321 SM00267 diguanylate cyclase Thivi_1321 SM00448 cheY-homologous receiver domain Thivi_1323 SM00052 Putative diguanylate phosphodiesterase Thivi_1323 SM00267 diguanylate cyclase Thivi_1324 SM00642 Alpha-amylase domain Thivi_1329 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_1331 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1339 SM00382 ATPases associated with a variety of cellular activities Thivi_1340 SM00857 Resolvase, N terminal domain Thivi_1342 SM00382 ATPases associated with a variety of cellular activities Thivi_1359 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Thivi_1359 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Thivi_1362 SM00091 PAS domain Thivi_1363 SM00052 Putative diguanylate phosphodiesterase Thivi_1379 SM00028 Tetratricopeptide repeats Thivi_1379 SM00862 Transcriptional regulatory protein, C terminal Thivi_1383 SM00052 Putative diguanylate phosphodiesterase Thivi_1383 SM00267 diguanylate cyclase Thivi_1388 SM00849 Metallo-beta-lactamase superfamily Thivi_1415 SM00422 helix_turn_helix, mercury resistance Thivi_1427 SM00966 SpoVT / AbrB like domain Thivi_1437 SM00387 Histidine kinase-like ATPases Thivi_1437 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1437 SM00448 cheY-homologous receiver domain Thivi_1440 SM00448 cheY-homologous receiver domain Thivi_1478 SM00966 SpoVT / AbrB like domain Thivi_1487 SM00382 ATPases associated with a variety of cellular activities Thivi_1517 SM00331 Sigma factor PP2C-like phosphatases Thivi_1517 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thivi_1520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1533 SM00530 Helix-turn-helix XRE-family like proteins Thivi_1539 SM00530 Helix-turn-helix XRE-family like proteins Thivi_1542 SM00487 DEAD-like helicases superfamily Thivi_1558 SM00422 helix_turn_helix, mercury resistance Thivi_1559 SM00411 bacterial (prokaryotic) histone like domain Thivi_1560 SM00873 B3/4 domain Thivi_1560 SM00874 tRNA synthetase B5 domain Thivi_1560 SM00896 Ferredoxin-fold anticodon binding domain Thivi_1565 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thivi_1567 SM00849 Metallo-beta-lactamase superfamily Thivi_1568 SM00861 Transketolase, pyrimidine binding domain Thivi_1571 SM00961 Ribulose bisphosphate carboxylase, small chain Thivi_1574 SM00327 von Willebrand factor (vWF) type A domain Thivi_1575 SM00382 ATPases associated with a variety of cellular activities Thivi_1604 SM00448 cheY-homologous receiver domain Thivi_1610 SM00382 ATPases associated with a variety of cellular activities Thivi_1616 SM00857 Resolvase, N terminal domain Thivi_1629 SM00899 Thivi_1629 Thivi_1636 SM00422 helix_turn_helix, mercury resistance Thivi_1642 SM00966 SpoVT / AbrB like domain Thivi_1646 SM00347 helix_turn_helix multiple antibiotic resistance protein Thivi_1650 SM00028 Tetratricopeptide repeats Thivi_1650 SM00382 ATPases associated with a variety of cellular activities Thivi_1650 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thivi_1653 SM00382 ATPases associated with a variety of cellular activities Thivi_1666 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thivi_1667 SM00226 Low molecular weight phosphatase family Thivi_1671 SM00855 Phosphoglycerate mutase family Thivi_1691 SM00530 Helix-turn-helix XRE-family like proteins Thivi_1700 SM00382 ATPases associated with a variety of cellular activities Thivi_1704 SM01018 B12 binding domain Thivi_1709 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_1714 SM00382 ATPases associated with a variety of cellular activities Thivi_1718 SM00448 cheY-homologous receiver domain Thivi_1719 SM00448 cheY-homologous receiver domain Thivi_1719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_1720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1720 SM00091 PAS domain Thivi_1720 SM00387 Histidine kinase-like ATPases Thivi_1720 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1720 SM00448 cheY-homologous receiver domain Thivi_1722 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_1723 SM00357 Cold shock protein domain Thivi_1724 SM00382 ATPases associated with a variety of cellular activities Thivi_1728 SM00028 Tetratricopeptide repeats Thivi_1735 SM00382 ATPases associated with a variety of cellular activities Thivi_1735 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_1739 SM00966 SpoVT / AbrB like domain Thivi_1741 SM00014 Acid phosphatase homologues Thivi_1743 SM00387 Histidine kinase-like ATPases Thivi_1743 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1743 SM00448 cheY-homologous receiver domain Thivi_1748 SM00650 Ribosomal RNA adenine dimethylases Thivi_1749 SM00642 Alpha-amylase domain Thivi_1754 SM01057 Eukaryotic-type carbonic anhydrase Thivi_1757 SM00052 Putative diguanylate phosphodiesterase Thivi_1757 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1757 SM00091 PAS domain Thivi_1757 SM00267 diguanylate cyclase Thivi_1759 SM00460 Transglutaminase/protease-like homologues Thivi_1762 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_1762 SM00876 Biotin and Thiamin Synthesis associated domain Thivi_1769 SM00851 MGS-like domain Thivi_1769 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thivi_1770 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Thivi_1790 SM00028 Tetratricopeptide repeats Thivi_1799 SM00563 Phosphate acyltransferases Thivi_1811 SM00935 Outer membrane protein (OmpH-like) Thivi_1820 SM00382 ATPases associated with a variety of cellular activities Thivi_1824 SM00849 Metallo-beta-lactamase superfamily Thivi_1830 SM00052 Putative diguanylate phosphodiesterase Thivi_1830 SM00091 PAS domain Thivi_1830 SM00267 diguanylate cyclase Thivi_1830 SM00448 cheY-homologous receiver domain Thivi_1831 SM00073 Histidine Phosphotransfer domain Thivi_1831 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_1831 SM00091 PAS domain Thivi_1831 SM00387 Histidine kinase-like ATPases Thivi_1831 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1831 SM00448 cheY-homologous receiver domain Thivi_1845 SM00327 von Willebrand factor (vWF) type A domain Thivi_1846 SM00382 ATPases associated with a variety of cellular activities Thivi_1849 SM00507 HNH nucleases Thivi_1850 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_1850 SM01091 Transporter associated domain Thivi_1853 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_1863 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_1863 SM00387 Histidine kinase-like ATPases Thivi_1863 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1863 SM00448 cheY-homologous receiver domain Thivi_1863 SM01358 Thivi_1863 Thivi_1865 SM00479 Thivi_1865 Thivi_1871 SM00287 Bacterial SH3 domain homologues Thivi_1874 SM00223 APPLE domain Thivi_1874 SM01359 Thivi_1874 Thivi_1874 SM01360 Thivi_1874 Thivi_1882 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_1917 SM00382 ATPases associated with a variety of cellular activities Thivi_1917 SM00962 SRP54-type protein, GTPase domain Thivi_1917 SM00963 SRP54-type protein, helical bundle domain Thivi_1926 SM00387 Histidine kinase-like ATPases Thivi_1926 SM00388 His Kinase A (phosphoacceptor) domain Thivi_1926 SM00448 cheY-homologous receiver domain Thivi_1935 SM00900 Thivi_1935 Thivi_1940 SM00382 ATPases associated with a variety of cellular activities Thivi_1952 SM01321 Thivi_1952 Thivi_1956 SM00346 helix_turn_helix isocitrate lyase regulation Thivi_1957 SM00861 Transketolase, pyrimidine binding domain Thivi_1959 SM00899 Thivi_1959 Thivi_1960 SM00899 Thivi_1960 Thivi_1963 SM00382 ATPases associated with a variety of cellular activities Thivi_1990 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_2020 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. Thivi_2031 SM00487 DEAD-like helicases superfamily Thivi_2031 SM00490 helicase superfamily c-terminal domain Thivi_2036 SM00240 Forkhead associated domain Thivi_2037 SM00331 Sigma factor PP2C-like phosphatases Thivi_2037 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thivi_2038 SM00240 Forkhead associated domain Thivi_2038 SM00327 von Willebrand factor (vWF) type A domain Thivi_2039 SM00644 Thivi_2039 Thivi_2048 SM00901 Thivi_2048 Thivi_2049 SM00219 Tyrosine kinase, catalytic domain Thivi_2054 SM00331 Sigma factor PP2C-like phosphatases Thivi_2054 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thivi_2062 SM00028 Tetratricopeptide repeats Thivi_2063 SM00327 von Willebrand factor (vWF) type A domain Thivi_2064 SM00327 von Willebrand factor (vWF) type A domain Thivi_2067 SM01321 Thivi_2067 Thivi_2068 SM00465 GIY-YIG type nucleases (URI domain) Thivi_2079 SM00840 Thivi_2079 Thivi_2082 SM00988 UreE urease accessory protein, N-terminal domain Thivi_2087 SM00382 ATPases associated with a variety of cellular activities Thivi_2091 SM00567 E-Z type HEAT repeats Thivi_2099 SM00112 Cadherin repeats. Thivi_2099 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Thivi_2100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_2100 SM01049 Thivi_2100 Thivi_2102 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_2102 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_2106 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_2107 SM00448 cheY-homologous receiver domain Thivi_2108 SM00387 Histidine kinase-like ATPases Thivi_2108 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2110 SM00387 Histidine kinase-like ATPases Thivi_2110 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2111 SM00052 Putative diguanylate phosphodiesterase Thivi_2111 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2111 SM00091 PAS domain Thivi_2111 SM00267 diguanylate cyclase Thivi_2111 SM00448 cheY-homologous receiver domain Thivi_2116 SM00341 Helicase and RNase D C-terminal Thivi_2116 SM00487 DEAD-like helicases superfamily Thivi_2116 SM00490 helicase superfamily c-terminal domain Thivi_2116 SM00956 Thivi_2116 Thivi_2120 SM00434 DNA Topoisomerase IV Thivi_2123 SM00830 Chorismate mutase type II Thivi_2130 SM00849 Metallo-beta-lactamase superfamily Thivi_2145 SM00530 Helix-turn-helix XRE-family like proteins Thivi_2147 SM00320 WD40 repeats Thivi_2148 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_2148 SM00387 Histidine kinase-like ATPases Thivi_2148 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2149 SM00448 cheY-homologous receiver domain Thivi_2150 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2150 SM00091 PAS domain Thivi_2150 SM00387 Histidine kinase-like ATPases Thivi_2150 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2150 SM00448 cheY-homologous receiver domain Thivi_2161 SM00450 Rhodanese Homology Domain Thivi_2178 SM00984 UDP binding domain Thivi_2179 SM00257 Lysin motif Thivi_2190 SM00363 S4 RNA-binding domain Thivi_2191 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_2195 SM00226 Low molecular weight phosphatase family Thivi_2207 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_2219 SM00155 Phospholipase D. Active site motifs. Thivi_2222 SM00448 cheY-homologous receiver domain Thivi_2222 SM00850 LytTr DNA-binding domain Thivi_2227 SM00838 Elongation factor G C-terminus Thivi_2227 SM00889 Elongation factor G, domain IV Thivi_2229 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_2233 SM00382 ATPases associated with a variety of cellular activities Thivi_2243 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_2243 SM00924 MgtE intracellular N domain Thivi_2254 SM00825 Beta-ketoacyl synthase Thivi_2260 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_2264 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_2265 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_2265 SM01240 Thivi_2265 Thivi_2280 SM01091 Transporter associated domain Thivi_2283 SM00382 ATPases associated with a variety of cellular activities Thivi_2283 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_2298 SM00240 Forkhead associated domain Thivi_2304 SM00331 Sigma factor PP2C-like phosphatases Thivi_2304 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thivi_2306 SM00460 Transglutaminase/protease-like homologues Thivi_2309 SM00957 SecA DEAD-like domain Thivi_2309 SM00958 SecA preprotein cross-linking domain Thivi_2313 SM00864 Tubulin/FtsZ family, GTPase domain Thivi_2313 SM00865 Tubulin/FtsZ family, C-terminal domain Thivi_2314 SM00842 Cell division protein FtsA Thivi_2332 SM00749 bacterial OsmY and nodulation domain Thivi_2338 SM00052 Putative diguanylate phosphodiesterase Thivi_2338 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2338 SM00091 PAS domain Thivi_2338 SM00267 diguanylate cyclase Thivi_2338 SM00448 cheY-homologous receiver domain Thivi_2339 SM00448 cheY-homologous receiver domain Thivi_2340 SM00091 PAS domain Thivi_2340 SM00387 Histidine kinase-like ATPases Thivi_2340 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2340 SM01079 Thivi_2340 Thivi_2347 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thivi_2348 SM00861 Transketolase, pyrimidine binding domain Thivi_2355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_2355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_2359 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2360 SM00091 PAS domain Thivi_2368 SM00885 D5 N terminal like Thivi_2378 SM00448 cheY-homologous receiver domain Thivi_2378 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_2379 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2379 SM00387 Histidine kinase-like ATPases Thivi_2379 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2379 SM00448 cheY-homologous receiver domain Thivi_2380 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2399 SM00989 Thivi_2399 Thivi_2400 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_2401 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_2412 SM00091 PAS domain Thivi_2415 SM00487 DEAD-like helicases superfamily Thivi_2415 SM00490 helicase superfamily c-terminal domain Thivi_2415 SM00847 Helicase associated domain (HA2) Add an annotation Thivi_2416 SM01321 Thivi_2416 Thivi_2418 SM00903 Flavin reductase like domain Thivi_2423 SM00382 ATPases associated with a variety of cellular activities Thivi_2428 SM00986 Uracil DNA glycosylase superfamily Thivi_2428 SM00987 UreE urease accessory protein, C-terminal domain Thivi_2435 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Thivi_2438 SM00382 ATPases associated with a variety of cellular activities Thivi_2440 SM00116 Domain in cystathionine beta-synthase and other proteins. Thivi_2440 SM00924 MgtE intracellular N domain Thivi_2441 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2441 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2441 SM00091 PAS domain Thivi_2442 SM00448 cheY-homologous receiver domain Thivi_2442 SM01012 Thivi_2442 Thivi_2443 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_2444 SM00052 Putative diguanylate phosphodiesterase Thivi_2444 SM00091 PAS domain Thivi_2444 SM00267 diguanylate cyclase Thivi_2447 SM00382 ATPases associated with a variety of cellular activities Thivi_2452 SM00052 Putative diguanylate phosphodiesterase Thivi_2452 SM00091 PAS domain Thivi_2452 SM00267 diguanylate cyclase Thivi_2453 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_2455 SM00327 von Willebrand factor (vWF) type A domain Thivi_2460 SM00267 diguanylate cyclase Thivi_2460 SM00849 Metallo-beta-lactamase superfamily Thivi_2464 SM00382 ATPases associated with a variety of cellular activities Thivi_2465 SM00387 Histidine kinase-like ATPases Thivi_2466 SM00421 helix_turn_helix, Lux Regulon Thivi_2466 SM00448 cheY-homologous receiver domain Thivi_2484 SM00671 Sel1-like repeats. Thivi_2492 SM00966 SpoVT / AbrB like domain Thivi_2496 SM00028 Tetratricopeptide repeats Thivi_2503 SM00267 diguanylate cyclase Thivi_2504 SM00357 Cold shock protein domain Thivi_2504 SM00382 ATPases associated with a variety of cellular activities Thivi_2504 SM00959 Rho termination factor, N-terminal domain Thivi_2506 SM00487 DEAD-like helicases superfamily Thivi_2506 SM00490 helicase superfamily c-terminal domain Thivi_2510 SM00919 Malic enzyme, NAD binding domain Thivi_2510 SM01274 Thivi_2510 Thivi_2511 SM01091 Transporter associated domain Thivi_2517 SM00382 ATPases associated with a variety of cellular activities Thivi_2521 SM00382 ATPases associated with a variety of cellular activities Thivi_2539 SM00919 Malic enzyme, NAD binding domain Thivi_2539 SM01274 Thivi_2539 Thivi_2542 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thivi_2549 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2549 SM00091 PAS domain Thivi_2549 SM00267 diguanylate cyclase Thivi_2550 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_2550 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_2552 SM00052 Putative diguanylate phosphodiesterase Thivi_2552 SM00267 diguanylate cyclase Thivi_2552 SM01034 Sensors of blue-light using FAD Thivi_2556 SM01068 Putative carbohydrate binding domain Thivi_2557 SM00749 bacterial OsmY and nodulation domain Thivi_2566 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_2566 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_2566 SM01049 Thivi_2566 Thivi_2569 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_2573 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2573 SM00073 Histidine Phosphotransfer domain Thivi_2573 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2573 SM00091 PAS domain Thivi_2573 SM00387 Histidine kinase-like ATPases Thivi_2573 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2573 SM00448 cheY-homologous receiver domain Thivi_2574 SM00052 Putative diguanylate phosphodiesterase Thivi_2574 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2574 SM00091 PAS domain Thivi_2574 SM00267 diguanylate cyclase Thivi_2575 SM00091 PAS domain Thivi_2575 SM00387 Histidine kinase-like ATPases Thivi_2575 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2575 SM00448 cheY-homologous receiver domain Thivi_2576 SM00091 PAS domain Thivi_2576 SM00138 Methyltransferase, chemotaxis proteins Thivi_2580 SM00966 SpoVT / AbrB like domain Thivi_2585 SM00382 ATPases associated with a variety of cellular activities Thivi_2587 SM00852 Probable molybdopterin binding domain Thivi_2588 SM00852 Probable molybdopterin binding domain Thivi_2592 SM00382 ATPases associated with a variety of cellular activities Thivi_2600 SM00470 ParB-like nuclease domain Thivi_2603 SM01228 Thivi_2603 Thivi_2604 SM00382 ATPases associated with a variety of cellular activities Thivi_2605 SM00091 PAS domain Thivi_2605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_2605 SM00387 Histidine kinase-like ATPases Thivi_2605 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2605 SM00448 cheY-homologous receiver domain Thivi_2618 SM00487 DEAD-like helicases superfamily Thivi_2618 SM00490 helicase superfamily c-terminal domain Thivi_2621 SM00769 Water Stress and Hypersensitive response Thivi_2622 SM00382 ATPases associated with a variety of cellular activities Thivi_2631 SM00671 Sel1-like repeats. Thivi_2645 SM00778 Zinc-binding domain of primase-helicase Thivi_2667 SM00382 ATPases associated with a variety of cellular activities Thivi_2669 SM00271 DnaJ molecular chaperone homology domain Thivi_2678 SM00382 ATPases associated with a variety of cellular activities Thivi_2706 SM00052 Putative diguanylate phosphodiesterase Thivi_2706 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2706 SM00091 PAS domain Thivi_2706 SM00267 diguanylate cyclase Thivi_2711 SM00493 Thivi_2711 Thivi_2713 SM00382 ATPases associated with a variety of cellular activities Thivi_2716 SM00357 Cold shock protein domain Thivi_2720 SM00382 ATPases associated with a variety of cellular activities Thivi_2721 SM00450 Rhodanese Homology Domain Thivi_2725 SM00564 beta-propeller repeat Thivi_2729 SM00028 Tetratricopeptide repeats Thivi_2731 SM00562 Thivi_2731 Thivi_2741 SM00450 Rhodanese Homology Domain Thivi_2743 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_2752 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_2754 SM00935 Outer membrane protein (OmpH-like) Thivi_2765 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2765 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2765 SM00091 PAS domain Thivi_2765 SM00267 diguanylate cyclase Thivi_2765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_2770 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Thivi_2773 SM00855 Phosphoglycerate mutase family Thivi_2785 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_2785 SM00245 tail specific protease Thivi_2787 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thivi_2788 SM00450 Rhodanese Homology Domain Thivi_2794 SM00382 ATPases associated with a variety of cellular activities Thivi_2794 SM00448 cheY-homologous receiver domain Thivi_2795 SM00091 PAS domain Thivi_2795 SM00387 Histidine kinase-like ATPases Thivi_2795 SM00388 His Kinase A (phosphoacceptor) domain Thivi_2797 SM01230 Thivi_2797 Thivi_2800 SM00240 Forkhead associated domain Thivi_2808 SM00255 Toll - interleukin 1 - resistance Thivi_2810 SM00966 SpoVT / AbrB like domain Thivi_2823 SM01154 Thivi_2823 Thivi_2826 SM00852 Probable molybdopterin binding domain Thivi_2829 SM00563 Phosphate acyltransferases Thivi_2831 SM00836 DALR anticodon binding domain Thivi_2840 SM00052 Putative diguanylate phosphodiesterase Thivi_2840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_2840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2840 SM00091 PAS domain Thivi_2840 SM00267 diguanylate cyclase Thivi_2840 SM01049 Thivi_2840 Thivi_2842 SM00480 DNA polymerase III beta subunit Thivi_2843 SM00382 ATPases associated with a variety of cellular activities Thivi_2843 SM00760 Bacterial dnaA protein helix-turn-helix domain Thivi_2846 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_2847 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_2852 SM00842 Cell division protein FtsA Thivi_2856 SM00965 Secretin and TonB N terminus short domain Thivi_2863 SM00382 ATPases associated with a variety of cellular activities Thivi_2891 SM00382 ATPases associated with a variety of cellular activities Thivi_2891 SM00464 Found in ATP-dependent protease La (LON) Thivi_2896 SM00382 ATPases associated with a variety of cellular activities Thivi_2901 SM00642 Alpha-amylase domain Thivi_2905 SM00387 Histidine kinase-like ATPases Thivi_2905 SM00433 TopoisomeraseII Thivi_2918 SM00220 Serine/Threonine protein kinases, catalytic domain Thivi_2920 SM00327 von Willebrand factor (vWF) type A domain Thivi_2921 SM00327 von Willebrand factor (vWF) type A domain Thivi_2924 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_2925 SM00880 Thivi_2925 Thivi_2931 SM00650 Ribosomal RNA adenine dimethylases Thivi_2948 SM01126 Thivi_2948 Thivi_2971 SM00838 Elongation factor G C-terminus Thivi_2971 SM00889 Elongation factor G, domain IV Thivi_2972 SM00267 diguanylate cyclase Thivi_2974 SM00947 Carbonic anhydrase Thivi_2985 SM00382 ATPases associated with a variety of cellular activities Thivi_2986 SM00382 ATPases associated with a variety of cellular activities Thivi_2986 SM00962 SRP54-type protein, GTPase domain Thivi_2986 SM00963 SRP54-type protein, helical bundle domain Thivi_2987 SM00052 Putative diguanylate phosphodiesterase Thivi_2987 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_2987 SM00091 PAS domain Thivi_2987 SM00267 diguanylate cyclase Thivi_2988 SM00138 Methyltransferase, chemotaxis proteins Thivi_2989 SM01091 Transporter associated domain Thivi_2990 SM01091 Transporter associated domain Thivi_3000 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_3000 SM00091 PAS domain Thivi_3000 SM00387 Histidine kinase-like ATPases Thivi_3000 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3000 SM00448 cheY-homologous receiver domain Thivi_3002 SM00382 ATPases associated with a variety of cellular activities Thivi_3006 SM01234 Thivi_3006 Thivi_3009 SM00530 Helix-turn-helix XRE-family like proteins Thivi_3014 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_3014 SM01358 Thivi_3014 Thivi_3032 SM00822 Thivi_3032 Thivi_3039 SM00052 Putative diguanylate phosphodiesterase Thivi_3048 SM00382 ATPases associated with a variety of cellular activities Thivi_3052 SM00849 Metallo-beta-lactamase superfamily Thivi_3063 SM00382 ATPases associated with a variety of cellular activities Thivi_3070 SM00450 Rhodanese Homology Domain Thivi_3082 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thivi_3089 SM01004 Delta-aminolevulinic acid dehydratase Thivi_3091 SM00382 ATPases associated with a variety of cellular activities Thivi_3092 SM00271 DnaJ molecular chaperone homology domain Thivi_3095 SM00644 Thivi_3095 Thivi_3107 SM00966 SpoVT / AbrB like domain Thivi_3117 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Thivi_3123 SM00861 Transketolase, pyrimidine binding domain Thivi_3126 SM01323 Thivi_3126 Thivi_3132 SM00382 ATPases associated with a variety of cellular activities Thivi_3135 SM00382 ATPases associated with a variety of cellular activities Thivi_3141 SM00450 Rhodanese Homology Domain Thivi_3160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_3160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_3167 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_3171 SM01387 Thivi_3171 Thivi_3172 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_3172 SM00322 K homology RNA-binding domain Thivi_3175 SM00382 ATPases associated with a variety of cellular activities Thivi_3183 SM00900 Thivi_3183 Thivi_3188 SM00382 ATPases associated with a variety of cellular activities Thivi_3193 SM00382 ATPases associated with a variety of cellular activities Thivi_3193 SM00448 cheY-homologous receiver domain Thivi_3194 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_3194 SM00387 Histidine kinase-like ATPases Thivi_3194 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3199 SM00257 Lysin motif Thivi_3202 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Thivi_3202 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Thivi_3202 SM00493 Thivi_3202 Thivi_3208 SM00318 Staphylococcal nuclease homologues Thivi_3213 SM00382 ATPases associated with a variety of cellular activities Thivi_3224 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_3234 SM00382 ATPases associated with a variety of cellular activities Thivi_3239 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thivi_3239 SM00895 Thivi_3239 Thivi_3250 SM00267 diguanylate cyclase Thivi_3250 SM00448 cheY-homologous receiver domain Thivi_3251 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_3253 SM00382 ATPases associated with a variety of cellular activities Thivi_3262 SM00382 ATPases associated with a variety of cellular activities Thivi_3275 SM00642 Alpha-amylase domain Thivi_3284 SM00464 Found in ATP-dependent protease La (LON) Thivi_3289 SM00387 Histidine kinase-like ATPases Thivi_3289 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3291 SM00563 Phosphate acyltransferases Thivi_3295 SM00327 von Willebrand factor (vWF) type A domain Thivi_3296 SM00028 Tetratricopeptide repeats Thivi_3303 SM00073 Histidine Phosphotransfer domain Thivi_3303 SM00260 Two component signalling adaptor domain Thivi_3303 SM00387 Histidine kinase-like ATPases Thivi_3303 SM00448 cheY-homologous receiver domain Thivi_3303 SM01231 Thivi_3303 Thivi_3304 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_3305 SM00260 Two component signalling adaptor domain Thivi_3306 SM00448 cheY-homologous receiver domain Thivi_3307 SM00448 cheY-homologous receiver domain Thivi_3312 SM00732 Likely ribonuclease with RNase H fold. Thivi_3316 SM00382 ATPases associated with a variety of cellular activities Thivi_3317 SM00382 ATPases associated with a variety of cellular activities Thivi_3319 SM01001 AIR carboxylase Thivi_3322 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_3322 SM00954 Region found in RelA / SpoT proteins Thivi_3323 SM01409 Thivi_3323 Thivi_3324 SM00072 Guanylate kinase homologues. Thivi_3326 SM00220 Serine/Threonine protein kinases, catalytic domain Thivi_3332 SM01152 Thivi_3332 Thivi_3345 SM00904 Riboflavin kinase Thivi_3349 SM00487 DEAD-like helicases superfamily Thivi_3349 SM00491 Thivi_3349 Thivi_3351 SM00382 ATPases associated with a variety of cellular activities Thivi_3351 SM00487 DEAD-like helicases superfamily Thivi_3351 SM00490 helicase superfamily c-terminal domain Thivi_3351 SM00847 Helicase associated domain (HA2) Add an annotation Thivi_3352 SM00052 Putative diguanylate phosphodiesterase Thivi_3352 SM00448 cheY-homologous receiver domain Thivi_3358 SM00881 CoA binding domain Thivi_3361 SM00938 Nitrogen regulatory protein P-II Thivi_3367 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thivi_3367 SM00245 tail specific protease Thivi_3372 SM00478 endonuclease III Thivi_3385 SM01011 Aminopeptidase P, N-terminal domain Thivi_3391 SM00052 Putative diguanylate phosphodiesterase Thivi_3392 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_3392 SM00382 ATPases associated with a variety of cellular activities Thivi_3393 SM00091 PAS domain Thivi_3393 SM00387 Histidine kinase-like ATPases Thivi_3398 SM00900 Thivi_3398 Thivi_3401 SM00507 HNH nucleases Thivi_3402 SM00981 Thivi_3402 Thivi_3416 SM00450 Rhodanese Homology Domain Thivi_3421 SM00320 WD40 repeats Thivi_3424 SM00382 ATPases associated with a variety of cellular activities Thivi_3428 SM00240 Forkhead associated domain Thivi_3432 SM00028 Tetratricopeptide repeats Thivi_3434 SM00845 GatB domain Thivi_3435 SM00822 Thivi_3435 Thivi_3452 SM00382 ATPases associated with a variety of cellular activities Thivi_3454 SM00052 Putative diguanylate phosphodiesterase Thivi_3454 SM00267 diguanylate cyclase Thivi_3454 SM00448 cheY-homologous receiver domain Thivi_3461 SM00267 diguanylate cyclase Thivi_3465 SM00382 ATPases associated with a variety of cellular activities Thivi_3466 SM00382 ATPases associated with a variety of cellular activities Thivi_3469 SM00938 Nitrogen regulatory protein P-II Thivi_3486 SM00422 helix_turn_helix, mercury resistance Thivi_3486 SM00857 Resolvase, N terminal domain Thivi_3487 SM00342 helix_turn_helix, arabinose operon control protein Thivi_3550 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_3560 SM00327 von Willebrand factor (vWF) type A domain Thivi_3578 SM00382 ATPases associated with a variety of cellular activities Thivi_3578 SM00448 cheY-homologous receiver domain Thivi_3579 SM00996 S-adenosyl-L-homocysteine hydrolase Thivi_3579 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thivi_3593 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_3593 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_3605 SM00487 DEAD-like helicases superfamily Thivi_3605 SM00490 helicase superfamily c-terminal domain Thivi_3611 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_3611 SM00450 Rhodanese Homology Domain Thivi_3619 SM00563 Phosphate acyltransferases Thivi_3622 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_3627 SM00460 Transglutaminase/protease-like homologues Thivi_3638 SM00400 zinc finger Thivi_3660 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_3676 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Thivi_3676 SM01232 Thivi_3676 Thivi_3683 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Thivi_3683 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Thivi_3683 SM00493 Thivi_3683 Thivi_3684 SM00671 Sel1-like repeats. Thivi_3687 SM00954 Region found in RelA / SpoT proteins Thivi_3688 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thivi_3689 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_3689 SM00091 PAS domain Thivi_3689 SM00448 cheY-homologous receiver domain Thivi_3690 SM00387 Histidine kinase-like ATPases Thivi_3690 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3690 SM00448 cheY-homologous receiver domain Thivi_3691 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_3691 SM00387 Histidine kinase-like ATPases Thivi_3691 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3692 SM00448 cheY-homologous receiver domain Thivi_3692 SM00862 Transcriptional regulatory protein, C terminal Thivi_3694 SM00028 Tetratricopeptide repeats Thivi_3701 SM01049 Thivi_3701 Thivi_3702 SM00530 Helix-turn-helix XRE-family like proteins Thivi_3711 SM00645 Papain family cysteine protease Thivi_3718 SM00421 helix_turn_helix, Lux Regulon Thivi_3718 SM00448 cheY-homologous receiver domain Thivi_3719 SM00387 Histidine kinase-like ATPases Thivi_3726 SM00331 Sigma factor PP2C-like phosphatases Thivi_3726 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thivi_3738 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thivi_3738 SM00534 ATPase domain of DNA mismatch repair MUTS family Thivi_3751 SM00478 endonuclease III Thivi_3755 SM00487 DEAD-like helicases superfamily Thivi_3755 SM00490 helicase superfamily c-terminal domain Thivi_3764 SM00642 Alpha-amylase domain Thivi_3766 SM01005 Alanine racemase, C-terminal domain Thivi_3767 SM00090 RIO-like kinase Thivi_3770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_3770 SM00091 PAS domain Thivi_3770 SM00387 Histidine kinase-like ATPases Thivi_3770 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3770 SM00448 cheY-homologous receiver domain Thivi_3771 SM00917 LeuA allosteric (dimerisation) domain Thivi_3772 SM00986 Uracil DNA glycosylase superfamily Thivi_3772 SM00987 UreE urease accessory protein, C-terminal domain Thivi_3774 SM00014 Acid phosphatase homologues Thivi_3776 SM00563 Phosphate acyltransferases Thivi_3783 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_3786 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Thivi_3794 SM00836 DALR anticodon binding domain Thivi_3794 SM01016 Arginyl tRNA synthetase N terminal dom Thivi_3795 SM00487 DEAD-like helicases superfamily Thivi_3795 SM00490 helicase superfamily c-terminal domain Thivi_3796 SM00507 HNH nucleases Thivi_3798 SM00855 Phosphoglycerate mutase family Thivi_3801 SM00450 Rhodanese Homology Domain Thivi_3807 SM00382 ATPases associated with a variety of cellular activities Thivi_3813 SM00890 Domain of unknown function Thivi_3822 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_3822 SM00091 PAS domain Thivi_3822 SM00267 diguanylate cyclase Thivi_3833 SM00936 Penicillin-binding protein 5, C-terminal domain Thivi_3845 SM00829 Enoylreductase Thivi_3855 SM00861 Transketolase, pyrimidine binding domain Thivi_3859 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_3859 SM00387 Histidine kinase-like ATPases Thivi_3859 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3860 SM00448 cheY-homologous receiver domain Thivi_3860 SM00862 Transcriptional regulatory protein, C terminal Thivi_3867 SM00360 RNA recognition motif Thivi_3874 SM00028 Tetratricopeptide repeats Thivi_3897 SM00460 Transglutaminase/protease-like homologues Thivi_3917 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thivi_3918 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thivi_3926 SM01130 Thivi_3926 Thivi_3928 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_3928 SM00091 PAS domain Thivi_3928 SM00267 diguanylate cyclase Thivi_3930 SM00248 ankyrin repeats Thivi_3943 SM00867 YceI-like domain Thivi_3945 SM00857 Resolvase, N terminal domain Thivi_3948 SM00382 ATPases associated with a variety of cellular activities Thivi_3948 SM00448 cheY-homologous receiver domain Thivi_3949 SM00387 Histidine kinase-like ATPases Thivi_3949 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3964 SM00257 Lysin motif Thivi_3967 SM00479 Thivi_3967 Thivi_3968 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_3968 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_3975 SM01192 Thivi_3975 Thivi_3975 SM01193 Thivi_3975 Thivi_3990 SM00052 Putative diguanylate phosphodiesterase Thivi_3990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_3990 SM00091 PAS domain Thivi_3990 SM00267 diguanylate cyclase Thivi_3991 SM00091 PAS domain Thivi_3991 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_3991 SM00387 Histidine kinase-like ATPases Thivi_3991 SM00388 His Kinase A (phosphoacceptor) domain Thivi_3991 SM00448 cheY-homologous receiver domain Thivi_3992 SM00267 diguanylate cyclase Thivi_3992 SM00448 cheY-homologous receiver domain Thivi_4000 SM00257 Lysin motif Thivi_4000 SM00646 Thivi_4000 Thivi_4001 SM00853 MutL C terminal dimerisation domain Thivi_4001 SM01340 Thivi_4001 Thivi_4017 SM00271 DnaJ molecular chaperone homology domain Thivi_4018 SM00267 diguanylate cyclase Thivi_4018 SM00448 cheY-homologous receiver domain Thivi_4019 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_4019 SM00091 PAS domain Thivi_4019 SM00387 Histidine kinase-like ATPases Thivi_4019 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4019 SM01079 Thivi_4019 Thivi_4038 SM00382 ATPases associated with a variety of cellular activities Thivi_4061 SM00854 Bacterial capsule synthesis protein PGA_cap Thivi_4071 SM00479 Thivi_4071 Thivi_4077 SM00905 Dihydroneopterin aldolase Thivi_4078 SM01207 Thivi_4078 Thivi_4079 SM00091 PAS domain Thivi_4079 SM00387 Histidine kinase-like ATPases Thivi_4083 SM00400 zinc finger Thivi_4083 SM00493 Thivi_4083 Thivi_4093 SM00331 Sigma factor PP2C-like phosphatases Thivi_4094 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_4095 SM00062 Bacterial periplasmic substrate-binding proteins Thivi_4100 SM00316 Ribosomal protein S1-like RNA-binding domain Thivi_4104 SM00487 DEAD-like helicases superfamily Thivi_4104 SM00490 helicase superfamily c-terminal domain Thivi_4106 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thivi_4106 SM00091 PAS domain Thivi_4106 SM00387 Histidine kinase-like ATPases Thivi_4107 SM00421 helix_turn_helix, Lux Regulon Thivi_4107 SM00448 cheY-homologous receiver domain Thivi_4108 SM00267 diguanylate cyclase Thivi_4110 SM00448 cheY-homologous receiver domain Thivi_4111 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_4112 SM00448 cheY-homologous receiver domain Thivi_4114 SM00073 Histidine Phosphotransfer domain Thivi_4114 SM00260 Two component signalling adaptor domain Thivi_4114 SM00387 Histidine kinase-like ATPases Thivi_4114 SM01231 Thivi_4114 Thivi_4115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_4115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_4116 SM00260 Two component signalling adaptor domain Thivi_4117 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thivi_4117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_4117 SM01049 Thivi_4117 Thivi_4118 SM00260 Two component signalling adaptor domain Thivi_4119 SM00138 Methyltransferase, chemotaxis proteins Thivi_4121 SM00448 cheY-homologous receiver domain Thivi_4122 SM00052 Putative diguanylate phosphodiesterase Thivi_4122 SM00091 PAS domain Thivi_4122 SM00267 diguanylate cyclase Thivi_4134 SM00487 DEAD-like helicases superfamily Thivi_4145 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_4145 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_4146 SM00052 Putative diguanylate phosphodiesterase Thivi_4146 SM00267 diguanylate cyclase Thivi_4147 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_4154 SM00487 DEAD-like helicases superfamily Thivi_4154 SM00490 helicase superfamily c-terminal domain Thivi_4163 SM00448 cheY-homologous receiver domain Thivi_4163 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_4164 SM00073 Histidine Phosphotransfer domain Thivi_4164 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_4164 SM00387 Histidine kinase-like ATPases Thivi_4164 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4164 SM00448 cheY-homologous receiver domain Thivi_4173 SM00937 Thivi_4173 Thivi_4175 SM00028 Tetratricopeptide repeats Thivi_4178 SM01400 Thivi_4178 Thivi_4182 SM00984 UDP binding domain Thivi_4189 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thivi_4189 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thivi_4190 SM00649 Ribosomal protein L11/L12 Thivi_4195 SM00663 RNA polymerase I subunit A N-terminus Thivi_4198 SM00838 Elongation factor G C-terminus Thivi_4198 SM00889 Elongation factor G, domain IV Thivi_4200 SM01403 Thivi_4200 Thivi_4204 SM01382 Thivi_4204 Thivi_4204 SM01383 Thivi_4204 Thivi_4207 SM00322 K homology RNA-binding domain Thivi_4211 SM01374 Thivi_4211 Thivi_4212 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thivi_4225 SM00363 S4 RNA-binding domain Thivi_4225 SM01390 Thivi_4225 Thivi_4226 SM00662 RNA polymerases D Thivi_4230 SM00891 ERCC4 domain Thivi_4232 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_4233 SM00052 Putative diguanylate phosphodiesterase Thivi_4233 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_4233 SM00267 diguanylate cyclase Thivi_4235 SM00327 von Willebrand factor (vWF) type A domain Thivi_4245 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Thivi_4247 SM00100 Cyclic nucleotide-monophosphate binding domain Thivi_4247 SM00419 helix_turn_helix, cAMP Regulatory protein Thivi_4248 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_4248 SM00387 Histidine kinase-like ATPases Thivi_4249 SM00421 helix_turn_helix, Lux Regulon Thivi_4249 SM00448 cheY-homologous receiver domain Thivi_4259 SM00382 ATPases associated with a variety of cellular activities Thivi_4259 SM00448 cheY-homologous receiver domain Thivi_4260 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_4260 SM00387 Histidine kinase-like ATPases Thivi_4260 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4261 SM00382 ATPases associated with a variety of cellular activities Thivi_4264 SM00028 Tetratricopeptide repeats Thivi_4264 SM00386 HAT (Half-A-TPR) repeats Thivi_4265 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_4277 SM00382 ATPases associated with a variety of cellular activities Thivi_4283 SM00984 UDP binding domain Thivi_4295 SM00382 ATPases associated with a variety of cellular activities Thivi_4295 SM00994 ClpX C4-type zinc finger Thivi_4295 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_4296 SM00363 S4 RNA-binding domain Thivi_4298 SM00382 ATPases associated with a variety of cellular activities Thivi_4301 SM00271 DnaJ molecular chaperone homology domain Thivi_4301 SM00843 Thivi_4301 Thivi_4302 SM00382 ATPases associated with a variety of cellular activities Thivi_4302 SM00843 Thivi_4302 Thivi_4303 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thivi_4303 SM00387 Histidine kinase-like ATPases Thivi_4303 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4303 SM00448 cheY-homologous receiver domain Thivi_4304 SM00387 Histidine kinase-like ATPases Thivi_4304 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4304 SM00448 cheY-homologous receiver domain Thivi_4305 SM00357 Cold shock protein domain Thivi_4311 SM00382 ATPases associated with a variety of cellular activities Thivi_4312 SM00382 ATPases associated with a variety of cellular activities Thivi_4321 SM00479 Thivi_4321 Thivi_4325 SM01118 Thivi_4325 Thivi_4335 SM00448 cheY-homologous receiver domain Thivi_4335 SM00862 Transcriptional regulatory protein, C terminal Thivi_4336 SM00387 Histidine kinase-like ATPases Thivi_4336 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4352 SM00897 FIST N domain Thivi_4352 SM01204 Thivi_4352 Thivi_4353 SM00387 Histidine kinase-like ATPases Thivi_4353 SM00433 TopoisomeraseII Thivi_4354 SM01211 Thivi_4354 Thivi_4356 SM00448 cheY-homologous receiver domain Thivi_4365 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thivi_4365 SM00465 GIY-YIG type nucleases (URI domain) Thivi_4374 SM00857 Resolvase, N terminal domain Thivi_4376 SM00382 ATPases associated with a variety of cellular activities Thivi_4378 SM00400 zinc finger Thivi_4401 SM00411 bacterial (prokaryotic) histone like domain Thivi_4436 SM01252 Thivi_4436 Thivi_4453 SM00382 ATPases associated with a variety of cellular activities Thivi_4453 SM00448 cheY-homologous receiver domain Thivi_4454 SM00387 Histidine kinase-like ATPases Thivi_4454 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4463 SM00387 Histidine kinase-like ATPases Thivi_4463 SM00388 His Kinase A (phosphoacceptor) domain Thivi_4464 SM00448 cheY-homologous receiver domain Thivi_4464 SM00862 Transcriptional regulatory protein, C terminal Thivi_4474 SM00448 cheY-homologous receiver domain Thivi_4474 SM00862 Transcriptional regulatory protein, C terminal Thivi_4475 SM00387 Histidine kinase-like ATPases Thivi_4482 SM00248 ankyrin repeats Thivi_4488 SM00771 ZipA, C-terminal domain (FtsZ-binding) Thivi_4489 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thivi_4489 SM00292 breast cancer carboxy-terminal domain Thivi_4489 SM00532 Ligase N family Thivi_4491 SM01057 Eukaryotic-type carbonic anhydrase Thivi_4503 SM00327 von Willebrand factor (vWF) type A domain Thivi_4504 SM00478 endonuclease III Thivi_4505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thivi_4505 SM00267 diguanylate cyclase Thivi_4505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_4527 SM00729 Elongator protein 3, MiaB family, Radical SAM Thivi_4531 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Thivi_4535 SM00869 Autotransporter beta-domain Thivi_4542 SM00671 Sel1-like repeats. Thivi_4543 SM00028 Tetratricopeptide repeats Thivi_4543 SM00220 Serine/Threonine protein kinases, catalytic domain Thivi_4562 SM00434 DNA Topoisomerase IV Thivi_4570 SM00487 DEAD-like helicases superfamily Thivi_4572 SM01329 Thivi_4572 Thivi_4573 SM00357 Cold shock protein domain Thivi_4575 SM00382 ATPases associated with a variety of cellular activities Thivi_4575 SM01086 C-terminal, D2-small domain, of ClpB protein Thivi_4589 SM00344 helix_turn_helix ASNC type Thivi_4590 SM00917 LeuA allosteric (dimerisation) domain Thivi_4592 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thivi_4598 SM00271 DnaJ molecular chaperone homology domain Thivi_4605 SM00530 Helix-turn-helix XRE-family like proteins Thivi_4611 SM00487 DEAD-like helicases superfamily Thivi_4611 SM00490 helicase superfamily c-terminal domain Thivi_4614 SM00470 ParB-like nuclease domain Thivi_4622 SM00257 Lysin motif Thivi_4625 SM01350 Thivi_4625 Thivi_4626 SM00642 Alpha-amylase domain