locus-tag class description Thimo_0001 IPR002696 Putative membrane protein insertion efficiency factor Thimo_0002 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0002 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0002 IPR000100 Ribonuclease P Thimo_0003 IPR018312 Chromosomal replication control, initiator DnaA, conserved site Thimo_0003 IPR013317 Chromosomal replication initiator protein DnaA Thimo_0003 IPR013159 Chromosomal replication initiator, DnaA C-terminal Thimo_0003 IPR003593 AAA+ ATPase domain Thimo_0003 IPR024633 DnaA N-terminal domain Thimo_0003 IPR038454 DnaA, N-terminal domain superfamily Thimo_0003 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0003 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_0003 IPR001957 Chromosomal replication control, initiator DnaA Thimo_0003 IPR010921 Trp repressor/replication initiator Thimo_0004 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal Thimo_0004 IPR022637 DNA polymerase III, beta sliding clamp, central Thimo_0004 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal Thimo_0004 IPR001001 DNA polymerase III, beta sliding clamp Thimo_0005 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0005 IPR013704 Uncharacterised protein family UPF0313, N-terminal Thimo_0005 IPR024560 Uncharacterised protein family UPF0313, C-terminal Thimo_0005 IPR020612 Methylthiotransferase, conserved site Thimo_0005 IPR007197 Radical SAM Thimo_0005 IPR006638 Elp3/MiaB/NifB Thimo_0005 IPR022946 Uncharacterised protein family UPF0313 Thimo_0006 IPR016187 C-type lectin fold Thimo_0006 IPR005532 Sulfatase-modifying factor enzyme Thimo_0006 IPR032890 Hercynine oxygenase, Actinobacteria Thimo_0006 IPR017806 Ergothioneine biosynthesis protein EgtB Thimo_0006 IPR024775 DinB-like domain Thimo_0006 IPR042095 Sulfatase-modifying factor enzyme superfamily Thimo_0006 IPR034660 DinB/YfiT-like putative metalloenzymes Thimo_0007 IPR017804 Methyltransferase EgtD-like Thimo_0007 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0007 IPR032888 Histidine N-alpha-methyltransferase, Actinobacteria-type Thimo_0007 IPR019257 Histidine-specific methyltransferase, SAM-dependent Thimo_0007 IPR035094 Histidine N-alpha-methyltransferase Thimo_0009 IPR024463 Transposase TnpC, homeodomain Thimo_0009 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0009 IPR004291 Transposase, IS66 Thimo_0009 IPR024474 Zinc-finger binding domain of transposase IS66 Thimo_0009 IPR039552 Transposase IS66, C-terminal Thimo_0013 IPR012902 Prokaryotic N-terminal methylation site Thimo_0013 IPR001082 Fimbrial protein pilin Thimo_0015 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0015 IPR001173 Glycosyltransferase 2-like Thimo_0017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_0017 IPR001296 Glycosyl transferase, family 1 Thimo_0019 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_0028 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_0028 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0028 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Thimo_0028 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_0035 IPR011004 Trimeric LpxA-like superfamily Thimo_0035 IPR001451 Hexapeptide repeat Thimo_0036 IPR004104 Oxidoreductase, C-terminal Thimo_0036 IPR036291 NAD(P)-binding domain superfamily Thimo_0036 IPR000683 Oxidoreductase, N-terminal Thimo_0038 IPR002716 PIN domain Thimo_0038 IPR022907 VapC family Thimo_0038 IPR006226 PIN domain toxin Thimo_0038 IPR029060 PIN-like domain superfamily Thimo_0040 IPR001626 ABC transporter, TroCD-like Thimo_0040 IPR037294 ABC transporter, BtuC-like Thimo_0041 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0041 IPR017871 ABC transporter, conserved site Thimo_0041 IPR003593 AAA+ ATPase domain Thimo_0041 IPR003439 ABC transporter-like Thimo_0042 IPR006127 Periplasmic solute binding protein, ZnuA-like Thimo_0042 IPR035520 High-affinity zinc uptake system protein ZnuA Thimo_0043 IPR003755 HPr(Ser) kinase/phosphorylase Thimo_0043 IPR011104 HPr kinase/phosphorylase, C-terminal Thimo_0043 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal Thimo_0043 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Thimo_0044 IPR013369 Type II secretion system GspE Thimo_0044 IPR037257 General secretory system II, protein E, N-terminal superfamily Thimo_0044 IPR003593 AAA+ ATPase domain Thimo_0044 IPR007831 General secretory system II, protein E, N-terminal Thimo_0044 IPR001482 Type II/IV secretion system protein Thimo_0044 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0044 IPR042181 Type II secretion system, protein E, N-terminal Thimo_0045 IPR003004 GspF/PilC family Thimo_0045 IPR001992 Type II secretion system conserved site Thimo_0045 IPR018076 Type II secretion system F domain Thimo_0045 IPR042094 Type II secretion system F domain superfamily Thimo_0046 IPR012902 Prokaryotic N-terminal methylation site Thimo_0046 IPR013545 Type II secretion system protein G Thimo_0046 IPR010054 General secretion pathway protein G Thimo_0046 IPR000983 Bacterial general secretion pathway protein G-type pilin Thimo_0047 IPR002416 Type II secretion system protein H Thimo_0047 IPR022346 General secretion pathway, GspH Thimo_0048 IPR012902 Prokaryotic N-terminal methylation site Thimo_0048 IPR010052 Type II secretion system protein I Thimo_0050 IPR005628 General secretion pathway protein K Thimo_0050 IPR038072 GspK, central domain superfamily Thimo_0051 IPR007813 Fimbrial assembly PilN Thimo_0054 IPR001775 GspD/PilQ family Thimo_0054 IPR038591 NolW-like superfamily Thimo_0054 IPR004846 Type II/III secretion system Thimo_0054 IPR005644 NolW-like Thimo_0054 IPR013356 Type II secretion system GspD Thimo_0054 IPR004845 Type II secretion system GspD, conserved site Thimo_0055 IPR004147 UbiB domain Thimo_0055 IPR010232 Probable protein kinase UbiB Thimo_0055 IPR011009 Protein kinase-like domain superfamily Thimo_0056 IPR036527 SCP2 sterol-binding domain superfamily Thimo_0056 IPR003033 SCP2 sterol-binding domain Thimo_0056 IPR038989 Ubiquinone biosynthesis protein UbiJ Thimo_0057 IPR023576 UbiE/COQ5 methyltransferase, conserved site Thimo_0057 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0057 IPR004033 UbiE/COQ5 methyltransferase Thimo_0058 IPR027543 Lon protease, bacterial Thimo_0058 IPR003959 ATPase, AAA-type, core Thimo_0058 IPR008269 Peptidase S16, Lon proteolytic domain Thimo_0058 IPR027065 Lon protease Thimo_0058 IPR003111 Lon, substrate-binding domain Thimo_0058 IPR004815 Lon protease, bacterial/eukaryotic-type Thimo_0058 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0058 IPR008268 Peptidase S16, active site Thimo_0058 IPR015947 PUA-like superfamily Thimo_0058 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0058 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0058 IPR003593 AAA+ ATPase domain Thimo_0060 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_0060 IPR004563 Apolipoprotein N-acyltransferase Thimo_0060 IPR003010 Carbon-nitrogen hydrolase Thimo_0063 IPR005757 Murein peptide ligase Thimo_0063 IPR036565 Mur-like, catalytic domain superfamily Thimo_0063 IPR004101 Mur ligase, C-terminal Thimo_0063 IPR036615 Mur ligase, C-terminal domain superfamily Thimo_0063 IPR013221 Mur ligase, central Thimo_0063 IPR000713 Mur ligase, N-terminal catalytic domain Thimo_0064 IPR004507 Flavin prenyltransferase UbiX-like Thimo_0064 IPR036551 Flavin prenyltransferase-like Thimo_0064 IPR003382 Flavoprotein Thimo_0068 IPR032816 SNARE associated Golgi protein Thimo_0068 IPR032818 DedA family Thimo_0069 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_0069 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_0069 IPR005814 Aminotransferase class-III Thimo_0069 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0069 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase Thimo_0070 IPR013785 Aldolase-type TIM barrel Thimo_0070 IPR036206 Thiamin phosphate synthase superfamily Thimo_0070 IPR034291 Thiamine phosphate synthase Thimo_0070 IPR022998 Thiamine phosphate synthase/TenI Thimo_0071 IPR013785 Aldolase-type TIM barrel Thimo_0071 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Thimo_0071 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase Thimo_0071 IPR029056 Ribokinase-like Thimo_0071 IPR022998 Thiamine phosphate synthase/TenI Thimo_0071 IPR036206 Thiamin phosphate synthase superfamily Thimo_0071 IPR034291 Thiamine phosphate synthase Thimo_0072 IPR024935 Rubredoxin domain Thimo_0072 IPR018527 Rubredoxin, iron-binding site Thimo_0072 IPR024934 Rubredoxin-like domain Thimo_0072 IPR024922 Rubredoxin Thimo_0074 IPR035903 HesB-like domain superfamily Thimo_0074 IPR023063 FeS cluster insertion protein ErpA Thimo_0074 IPR000361 FeS cluster biogenesis Thimo_0074 IPR017870 FeS cluster insertion, C-terminal, conserved site Thimo_0074 IPR016092 FeS cluster insertion protein Thimo_0075 IPR012280 Semialdehyde dehydrogenase, dimerisation domain Thimo_0075 IPR000534 Semialdehyde dehydrogenase, NAD-binding Thimo_0075 IPR036291 NAD(P)-binding domain superfamily Thimo_0075 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 Thimo_0075 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site Thimo_0076 IPR034739 UvrD/AddA helicase, N-terminal Thimo_0076 IPR014016 UvrD-like helicase, ATP-binding domain Thimo_0076 IPR000212 DNA helicase, UvrD/REP type Thimo_0076 IPR013986 DExx box DNA helicase domain superfamily Thimo_0076 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0076 IPR005753 DNA helicase, ATP-dependent, UvrD type Thimo_0076 IPR014017 UvrD-like DNA helicase, C-terminal Thimo_0077 IPR026289 Solute binding protein, TakP-like Thimo_0077 IPR041722 Alpha-keto acid binding periplasmic protein Thimo_0077 IPR038404 TRAP transporter solute receptor DctP superfamily Thimo_0077 IPR018389 TRAP transporter solute receptor DctP/TeaA Thimo_0078 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0078 IPR007197 Radical SAM Thimo_0078 IPR004559 Heme chaperone HemW-like Thimo_0078 IPR006638 Elp3/MiaB/NifB Thimo_0078 IPR034505 Anaerobic coproporphyrinogen-III oxidase Thimo_0078 IPR010723 HemN, C-terminal Thimo_0079 IPR034704 L28p-like Thimo_0079 IPR002150 Ribosomal protein L31 Thimo_0079 IPR027491 Ribosomal protein L31 type A Thimo_0079 IPR042105 Ribosomal protein L31 superfamily Thimo_0081 IPR016143 Citrate synthase-like, small alpha subdomain Thimo_0081 IPR010953 Citrate synthase, type I Thimo_0081 IPR036969 Citrate synthase superfamily Thimo_0081 IPR002020 Citrate synthase Thimo_0081 IPR016142 Citrate synthase-like, large alpha subdomain Thimo_0081 IPR024176 Citrate synthase, bacterial-type Thimo_0081 IPR019810 Citrate synthase active site Thimo_0087 IPR021731 AMIN domain Thimo_0087 IPR038591 NolW-like superfamily Thimo_0087 IPR013355 Type IV pilus secretin PilQ Thimo_0087 IPR011662 Secretin/TonB, short N-terminal domain Thimo_0087 IPR004846 Type II/III secretion system Thimo_0087 IPR004845 Type II secretion system GspD, conserved site Thimo_0087 IPR001775 GspD/PilQ family Thimo_0087 IPR005644 NolW-like Thimo_0088 IPR023000 Shikimate kinase, conserved site Thimo_0088 IPR000623 Shikimate kinase/Threonine synthase-like 1 Thimo_0088 IPR031322 Shikimate kinase/gluconokinase Thimo_0088 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0089 IPR016037 3-dehydroquinate synthase AroB Thimo_0089 IPR030963 3-dehydroquinate synthase family Thimo_0089 IPR030960 3-dehydroquinate synthase domain Thimo_0090 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0090 IPR006982 Glutamate synthase, central-N Thimo_0090 IPR002932 Glutamate synthase domain Thimo_0090 IPR013785 Aldolase-type TIM barrel Thimo_0090 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily Thimo_0090 IPR002489 Glutamate synthase, alpha subunit, C-terminal Thimo_0090 IPR017932 Glutamine amidotransferase type 2 domain Thimo_0091 IPR009051 Alpha-helical ferredoxin Thimo_0091 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 Thimo_0091 IPR023753 FAD/NAD(P)-binding domain Thimo_0091 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0091 IPR028261 Dihydroprymidine dehydrogenase domain II Thimo_0092 IPR036249 Thioredoxin-like superfamily Thimo_0092 IPR024706 Peroxiredoxin, AhpC-type Thimo_0092 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant Thimo_0092 IPR013766 Thioredoxin domain Thimo_0093 IPR011006 CheY-like superfamily Thimo_0093 IPR005467 Histidine kinase domain Thimo_0093 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0093 IPR029151 Periplasmic sensor-like domain superfamily Thimo_0093 IPR015387 LuxQ, periplasmic Thimo_0093 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0093 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0093 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0093 IPR001789 Signal transduction response regulator, receiver domain Thimo_0093 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0094 IPR003607 HD/PDEase domain Thimo_0094 IPR001789 Signal transduction response regulator, receiver domain Thimo_0094 IPR011006 CheY-like superfamily Thimo_0094 IPR037522 HD-GYP domain Thimo_0096 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0096 IPR001045 Spermidine/spermine synthases Thimo_0096 IPR037163 Spermidine synthase, tetramerisation domain superfamily Thimo_0096 IPR035246 Spermidine synthase, tetramerisation domain Thimo_0096 IPR030373 Polyamine biosynthesis domain, conserved site Thimo_0096 IPR030374 Polyamine biosynthesis domain Thimo_0097 IPR024041 Ammonium transporter AmtB-like domain Thimo_0097 IPR029020 Ammonium/urea transporter Thimo_0097 IPR001905 Ammonium transporter Thimo_0097 IPR018047 Ammonium transporter, conserved site Thimo_0098 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_0098 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_0098 IPR002332 Nitrogen regulatory protein P-II, urydylation site Thimo_0098 IPR002187 Nitrogen regulatory protein PII Thimo_0098 IPR017918 Nitrogen regulatory protein PII, conserved site Thimo_0101 IPR000523 Magnesium chelatase ChlI domain Thimo_0101 IPR003593 AAA+ ATPase domain Thimo_0101 IPR004482 Mg chelatase-related protein Thimo_0101 IPR025158 Mg chelatase-related protein, C-terminal domain Thimo_0101 IPR001208 MCM domain Thimo_0101 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0101 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0101 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0102 IPR017871 ABC transporter, conserved site Thimo_0102 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0102 IPR032781 ABC-transporter extension domain Thimo_0102 IPR003593 AAA+ ATPase domain Thimo_0102 IPR003439 ABC transporter-like Thimo_0103 IPR011833 Glycogen/starch/alpha-glucan phosphorylase Thimo_0103 IPR000811 Glycosyl transferase, family 35 Thimo_0103 IPR035090 Phosphorylase pyridoxal-phosphate attachment site Thimo_0105 IPR008915 Peptidase M50 Thimo_0105 IPR041489 PDZ domain 6 Thimo_0105 IPR001478 PDZ domain Thimo_0105 IPR036034 PDZ superfamily Thimo_0105 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase Thimo_0106 IPR004408 Biotin--acetyl-CoA-carboxylase ligase Thimo_0106 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Thimo_0106 IPR003142 Biotin protein ligase, C-terminal Thimo_0107 IPR005330 MHYT domain Thimo_0107 IPR000160 GGDEF domain Thimo_0107 IPR035919 EAL domain superfamily Thimo_0107 IPR001633 EAL domain Thimo_0107 IPR029787 Nucleotide cyclase Thimo_0110 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_0110 IPR030873 Beta-barrel assembly-enhancing protease Thimo_0110 IPR001915 Peptidase M48 Thimo_0110 IPR019734 Tetratricopeptide repeat Thimo_0110 IPR013026 Tetratricopeptide repeat-containing domain Thimo_0113 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0113 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0113 IPR000944 Transcription regulator Rrf2-type Thimo_0113 IPR030489 Transcription regulator Rrf2-type, conserved site Thimo_0113 IPR010242 Transcription factor HTH, IscR Thimo_0116 IPR002549 Transmembrane protein TqsA-like Thimo_0118 IPR008538 Domain of unknown function DUF820 Thimo_0118 IPR011335 Restriction endonuclease type II-like Thimo_0119 IPR008040 Hydantoinaseoxoprolinase, N-terminal Thimo_0119 IPR002821 Hydantoinase A/oxoprolinase Thimo_0120 IPR006219 DHAP synthase, class 1 Thimo_0120 IPR006218 DAHP synthetase I/KDSA Thimo_0120 IPR013785 Aldolase-type TIM barrel Thimo_0121 IPR012347 Ferritin-like Thimo_0121 IPR023188 DNA-binding protein Dps, conserved site Thimo_0121 IPR008331 Ferritin/DPS protein domain Thimo_0121 IPR002177 DNA-binding protein Dps Thimo_0121 IPR009078 Ferritin-like superfamily Thimo_0122 IPR036425 MoaB/Mog-like domain superfamily Thimo_0122 IPR008135 Competence-induced protein CinA Thimo_0122 IPR041424 CinA, KH domain Thimo_0122 IPR008136 CinA, C-terminal Thimo_0122 IPR001453 MoaB/Mog domain Thimo_0122 IPR036653 CinA-like, C-terminal Thimo_0123 IPR036249 Thioredoxin-like superfamily Thimo_0123 IPR029760 Glutathione peroxidase conserved site Thimo_0123 IPR029759 Glutathione peroxidase active site Thimo_0123 IPR000889 Glutathione peroxidase Thimo_0124 IPR017927 FAD-binding domain, ferredoxin reductase-type Thimo_0124 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0124 IPR001433 Oxidoreductase FAD/NAD(P)-binding Thimo_0124 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_0124 IPR033892 Ferredoxin--NADP reductase, bacteria Thimo_0124 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Thimo_0126 IPR003342 Glycosyl transferase family 39/83 Thimo_0127 IPR001173 Glycosyltransferase 2-like Thimo_0127 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0128 IPR002068 Alpha crystallin/Hsp20 domain Thimo_0128 IPR023728 Small heat shock protein IbpA Thimo_0128 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain Thimo_0128 IPR008978 HSP20-like chaperone Thimo_0129 IPR001478 PDZ domain Thimo_0129 IPR001940 Peptidase S1C Thimo_0129 IPR036034 PDZ superfamily Thimo_0129 IPR011782 Peptidase S1C, Do Thimo_0129 IPR009003 Peptidase S1, PA clan Thimo_0131 IPR042245 Tgt2/MlaC superfamily Thimo_0131 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Thimo_0133 IPR001731 Delta-aminolevulinic acid dehydratase Thimo_0133 IPR030656 Delta-aminolevulinic acid dehydratase, active site Thimo_0133 IPR013785 Aldolase-type TIM barrel Thimo_0134 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Thimo_0134 IPR041121 SDH, C-terminal Thimo_0134 IPR011342 Shikimate dehydrogenase Thimo_0134 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal Thimo_0134 IPR022893 Shikimate dehydrogenase family Thimo_0134 IPR036291 NAD(P)-binding domain superfamily Thimo_0135 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Thimo_0135 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_0135 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Thimo_0135 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Thimo_0135 IPR015815 3-hydroxyisobutyrate dehydrogenase-related Thimo_0135 IPR036291 NAD(P)-binding domain superfamily Thimo_0135 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain Thimo_0143 IPR011806 Sulphite reductase, dissimilatory-type alpha subunit Thimo_0143 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Thimo_0143 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily Thimo_0143 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Thimo_0144 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0144 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0144 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Thimo_0144 IPR011808 Sulphite reductase, dissimilatory-type beta subunit Thimo_0144 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Thimo_0144 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily Thimo_0145 IPR003787 Sulphur relay, DsrE/F-like protein Thimo_0145 IPR027396 DsrEFH-like Thimo_0145 IPR017463 Sulphur relay, TusD/DsrE Thimo_0146 IPR017462 Sulphur relay, TusC/DsrF Thimo_0146 IPR003787 Sulphur relay, DsrE/F-like protein Thimo_0146 IPR027396 DsrEFH-like Thimo_0148 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0148 IPR025526 DsrC-like domain superfamily Thimo_0148 IPR042072 DsrC-like protein, C-terminal domain Thimo_0151 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 Thimo_0151 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0151 IPR009051 Alpha-helical ferredoxin Thimo_0151 IPR028261 Dihydroprymidine dehydrogenase domain II Thimo_0151 IPR023753 FAD/NAD(P)-binding domain Thimo_0153 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0153 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_0153 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0155 IPR029062 Class I glutamine amidotransferase-like Thimo_0155 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0155 IPR011698 CobB/CobQ-like glutamine amidotransferase Thimo_0155 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0155 IPR017929 CobB/CobQ glutamine amidotransferase Thimo_0155 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA Thimo_0157 IPR002937 Amine oxidase Thimo_0157 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0157 IPR014105 Carotenoid/retinoid oxidoreductase Thimo_0158 IPR036291 NAD(P)-binding domain superfamily Thimo_0158 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_0158 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0160 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0160 IPR001279 Metallo-beta-lactamase Thimo_0165 IPR011704 ATPase, dynein-related, AAA domain Thimo_0165 IPR013615 CbbQ/NirQ/NorQ, C-terminal Thimo_0165 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0167 IPR002035 von Willebrand factor, type A Thimo_0167 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0169 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0169 IPR004881 Ribosome biogenesis GTPase RsgA Thimo_0169 IPR010914 RsgA GTPase domain Thimo_0169 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain Thimo_0171 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 Thimo_0171 IPR006357 HAD-superfamily hydrolase, subfamily IIA Thimo_0171 IPR036412 HAD-like superfamily Thimo_0171 IPR023214 HAD superfamily Thimo_0175 IPR002423 Chaperonin Cpn60/TCP-1 family Thimo_0175 IPR001844 Chaperonin Cpn60 Thimo_0175 IPR018370 Chaperonin Cpn60, conserved site Thimo_0175 IPR027409 GroEL-like apical domain superfamily Thimo_0175 IPR027413 GroEL-like equatorial domain superfamily Thimo_0175 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Thimo_0176 IPR018369 Chaperonin GroES, conserved site Thimo_0176 IPR011032 GroES-like superfamily Thimo_0176 IPR020818 GroES chaperonin family Thimo_0176 IPR037124 GroES chaperonin superfamily Thimo_0178 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_0178 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_0178 IPR004323 Divalent ion tolerance protein, CutA Thimo_0179 IPR036249 Thioredoxin-like superfamily Thimo_0179 IPR022910 Thiol:disulphide interchange protein DsbD Thimo_0179 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Thimo_0179 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Thimo_0179 IPR003834 Cytochrome C biogenesis protein, transmembrane domain Thimo_0179 IPR013766 Thioredoxin domain Thimo_0179 IPR017937 Thioredoxin, conserved site Thimo_0179 IPR035671 DsbD gamma Thimo_0181 IPR036441 Dehydroquinase, class II superfamily Thimo_0181 IPR001874 Dehydroquinase, class II Thimo_0181 IPR018509 Dehydroquinase, class II, conserved site Thimo_0182 IPR011053 Single hybrid motif Thimo_0182 IPR000089 Biotin/lipoyl attachment Thimo_0182 IPR001882 Biotin-binding site Thimo_0182 IPR001249 Acetyl-CoA biotin carboxyl carrier Thimo_0183 IPR013815 ATP-grasp fold, subdomain 1 Thimo_0183 IPR011764 Biotin carboxylation domain Thimo_0183 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Thimo_0183 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase Thimo_0183 IPR005482 Biotin carboxylase, C-terminal Thimo_0183 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0183 IPR005481 Biotin carboxylase-like, N-terminal domain Thimo_0183 IPR011054 Rudiment single hybrid motif Thimo_0183 IPR011761 ATP-grasp fold Thimo_0184 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0184 IPR004498 Ribosomal protein L11 methyltransferase Thimo_0185 IPR013785 Aldolase-type TIM barrel Thimo_0185 IPR035587 DUS-like, FMN-binding domain Thimo_0185 IPR032887 tRNA-dihydrouridine synthase B Thimo_0185 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal Thimo_0185 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 Thimo_0185 IPR001269 tRNA-dihydrouridine synthase Thimo_0185 IPR018517 tRNA-dihydrouridine synthase, conserved site Thimo_0186 IPR005412 DNA-binding protein Fis Thimo_0186 IPR009057 Homeobox-like domain superfamily Thimo_0186 IPR002197 DNA binding HTH domain, Fis-type Thimo_0187 IPR036914 Methylglyoxal synthase-like domain superfamily Thimo_0187 IPR011607 Methylglyoxal synthase-like domain Thimo_0187 IPR016193 Cytidine deaminase-like Thimo_0187 IPR024051 AICAR transformylase, duplicated domain superfamily Thimo_0187 IPR002695 Bifunctional purine biosynthesis protein PurH-like Thimo_0188 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Thimo_0188 IPR001451 Hexapeptide repeat Thimo_0188 IPR011004 Trimeric LpxA-like superfamily Thimo_0188 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily Thimo_0188 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal Thimo_0189 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily Thimo_0189 IPR011054 Rudiment single hybrid motif Thimo_0189 IPR020560 Phosphoribosylglycinamide synthetase, C-domain Thimo_0189 IPR000115 Phosphoribosylglycinamide synthetase Thimo_0189 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thimo_0189 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0189 IPR013815 ATP-grasp fold, subdomain 1 Thimo_0189 IPR020559 Phosphoribosylglycinamide synthetase, conserved site Thimo_0189 IPR011761 ATP-grasp fold Thimo_0189 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal Thimo_0190 IPR013703 Peptidase S49, N-terminal proteobacteria Thimo_0190 IPR002142 Peptidase S49 Thimo_0190 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0191 IPR004797 Competence protein ComEC/Rec2 Thimo_0191 IPR004477 ComEC/Rec2-related protein Thimo_0191 IPR035681 ComA-like, MBL domain Thimo_0191 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0191 IPR001279 Metallo-beta-lactamase Thimo_0193 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0193 IPR011924 Lipoprotein releasing system, ATP-binding protein Thimo_0193 IPR015854 ABC transporter, lipoprotein release, LolD Thimo_0193 IPR017871 ABC transporter, conserved site Thimo_0193 IPR003439 ABC transporter-like Thimo_0193 IPR003593 AAA+ ATPase domain Thimo_0194 IPR003838 ABC transporter permease protein domain Thimo_0194 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E Thimo_0194 IPR025857 MacB-like periplasmic core domain Thimo_0195 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type Thimo_0195 IPR017754 Agmatine deiminase Thimo_0197 IPR034703 Proton/glutamate-aspartate symporter GltP Thimo_0197 IPR033380 Glutamate-aspartate symport protein GltP/GltT Thimo_0197 IPR001991 Sodium:dicarboxylate symporter Thimo_0197 IPR018107 Sodium:dicarboxylate symporter, conserved site Thimo_0197 IPR036458 Sodium:dicarboxylate symporter superfamily Thimo_0199 IPR013430 Toxin-antitoxin system, antidote protein, HigA Thimo_0199 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Thimo_0199 IPR001387 Cro/C1-type helix-turn-helix domain Thimo_0208 IPR026037 Phosphatidylglycerophosphatase A Thimo_0208 IPR036681 PgpA-like superfamily Thimo_0208 IPR007686 YutG/PgpA domain Thimo_0209 IPR036676 PurM-like, C-terminal domain superfamily Thimo_0209 IPR010918 PurM-like, C-terminal domain Thimo_0209 IPR016188 PurM-like, N-terminal domain Thimo_0209 IPR036921 PurM-like, N-terminal domain superfamily Thimo_0209 IPR006283 Thiamine-monophosphate kinase Thimo_0210 IPR006027 NusB/RsmB/TIM44 Thimo_0210 IPR035926 NusB-like superfamily Thimo_0210 IPR011605 NusB antitermination factor Thimo_0211 IPR002180 Lumazine/riboflavin synthase Thimo_0211 IPR036467 Lumazine/riboflavin synthase superfamily Thimo_0211 IPR034964 Lumazine synthase Thimo_0212 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB Thimo_0212 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_0212 IPR036144 RibA-like superfamily Thimo_0212 IPR032677 GTP cyclohydrolase II Thimo_0213 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily Thimo_0213 IPR001783 Lumazine-binding protein Thimo_0213 IPR026017 Lumazine-binding domain Thimo_0213 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0218 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_0218 IPR011006 CheY-like superfamily Thimo_0218 IPR001789 Signal transduction response regulator, receiver domain Thimo_0218 IPR039420 Transcriptional regulatory protein WalR-like Thimo_0218 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0219 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0219 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0219 IPR005467 Histidine kinase domain Thimo_0219 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0219 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0219 IPR003660 HAMP domain Thimo_0219 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0219 IPR013727 Two-component sensor kinase, N-terminal Thimo_0223 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase Thimo_0223 IPR010047 Ni-containing CO dehydrogenase Thimo_0223 IPR016101 CO dehydrogenase, alpha-bundle Thimo_0223 IPR016099 Prismane-like, alpha/beta-sandwich Thimo_0223 IPR011254 Prismane-like superfamily Thimo_0225 IPR035906 MetI-like superfamily Thimo_0225 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_0226 IPR003439 ABC transporter-like Thimo_0226 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0226 IPR003593 AAA+ ATPase domain Thimo_0226 IPR017871 ABC transporter, conserved site Thimo_0226 IPR005890 Nitrate transport ATP-binding subunit C/D Thimo_0229 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB Thimo_0229 IPR011005 Dihydropteroate synthase-like Thimo_0229 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0229 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0229 IPR007202 4Fe-4S domain Thimo_0230 IPR003667 NqrDE/RnfAE Thimo_0230 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA Thimo_0231 IPR003667 NqrDE/RnfAE Thimo_0231 IPR010968 Ion-translocating oxidoreductase complex subunit E Thimo_0232 IPR007329 FMN-binding Thimo_0232 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG Thimo_0233 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD Thimo_0233 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D Thimo_0234 IPR019554 Soluble ligand binding domain Thimo_0234 IPR026902 RnfC Barrel sandwich hybrid domain Thimo_0234 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC Thimo_0234 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Thimo_0234 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0234 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0234 IPR009051 Alpha-helical ferredoxin Thimo_0234 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Thimo_0235 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Thimo_0235 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Thimo_0235 IPR016102 Succinyl-CoA synthetase-like Thimo_0235 IPR036291 NAD(P)-binding domain superfamily Thimo_0235 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Thimo_0235 IPR003781 CoA-binding Thimo_0235 IPR005810 Succinyl-CoA ligase, alpha subunit Thimo_0236 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type Thimo_0236 IPR016102 Succinyl-CoA synthetase-like Thimo_0236 IPR005809 Succinate--CoA synthetase, beta subunit Thimo_0236 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site Thimo_0236 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Thimo_0236 IPR013815 ATP-grasp fold, subdomain 1 Thimo_0237 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal Thimo_0237 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 Thimo_0237 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Thimo_0237 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Thimo_0237 IPR036291 NAD(P)-binding domain superfamily Thimo_0237 IPR026255 NAD(P) transhydrogenase, alpha subunit Thimo_0237 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 Thimo_0238 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_0238 IPR012136 NADP transhydrogenase, beta subunit Thimo_0238 IPR034300 NADP transhydrogenase beta-like domain Thimo_0239 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Thimo_0239 IPR001236 Lactate/malate dehydrogenase, N-terminal Thimo_0239 IPR022383 Lactate/malate dehydrogenase, C-terminal Thimo_0239 IPR001557 L-lactate/malate dehydrogenase Thimo_0239 IPR036291 NAD(P)-binding domain superfamily Thimo_0239 IPR010945 Malate dehydrogenase, type 2 Thimo_0241 IPR016102 Succinyl-CoA synthetase-like Thimo_0241 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type Thimo_0241 IPR011761 ATP-grasp fold Thimo_0241 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site Thimo_0241 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Thimo_0241 IPR013815 ATP-grasp fold, subdomain 1 Thimo_0241 IPR005809 Succinate--CoA synthetase, beta subunit Thimo_0242 IPR036291 NAD(P)-binding domain superfamily Thimo_0242 IPR016102 Succinyl-CoA synthetase-like Thimo_0242 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Thimo_0242 IPR005810 Succinyl-CoA ligase, alpha subunit Thimo_0242 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Thimo_0242 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Thimo_0242 IPR003781 CoA-binding Thimo_0243 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Thimo_0243 IPR018136 Aconitase family, 4Fe-4S cluster binding site Thimo_0243 IPR036008 Aconitase, iron-sulfur domain Thimo_0243 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Thimo_0243 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit Thimo_0243 IPR033941 3-Isopropylmalate dehydratase, catalytic domain Thimo_0243 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic Thimo_0244 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric Thimo_0246 IPR005288 L-aspartate oxidase Thimo_0246 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Thimo_0246 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Thimo_0246 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0246 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Thimo_0246 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Thimo_0250 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_0250 IPR029061 Thiamin diphosphate-binding fold Thimo_0250 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain Thimo_0250 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal Thimo_0250 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit Thimo_0250 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain Thimo_0250 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Thimo_0251 IPR029061 Thiamin diphosphate-binding fold Thimo_0251 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Thimo_0253 IPR014103 Zeta-carotene desaturase Thimo_0253 IPR002937 Amine oxidase Thimo_0253 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0257 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase Thimo_0257 IPR017927 FAD-binding domain, ferredoxin reductase-type Thimo_0257 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Thimo_0257 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F Thimo_0257 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_0257 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_0257 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_0257 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0257 IPR012675 Beta-grasp domain superfamily Thimo_0257 IPR001433 Oxidoreductase FAD/NAD(P)-binding Thimo_0261 IPR036584 Flagellar protein FliS superfamily Thimo_0261 IPR003713 Flagellar protein FliS Thimo_0263 IPR001029 Flagellin, D0/D1 domain Thimo_0263 IPR001492 Flagellin Thimo_0264 IPR035924 FlaG-like superfamily Thimo_0264 IPR005186 FlaG protein Thimo_0265 IPR040026 Flagellar hook-associated protein 2 Thimo_0265 IPR003481 Flagellar hook-associated protein 2, N-terminal Thimo_0265 IPR010809 Flagellar hook-associated protein 2, C-terminal Thimo_0265 IPR010810 Flagellin hook, IN motif Thimo_0267 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0267 IPR001789 Signal transduction response regulator, receiver domain Thimo_0267 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0267 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_0267 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0267 IPR002197 DNA binding HTH domain, Fis-type Thimo_0267 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0267 IPR010114 DNA-binding transcriptional regulator NtrC Thimo_0267 IPR009057 Homeobox-like domain superfamily Thimo_0267 IPR011006 CheY-like superfamily Thimo_0267 IPR003593 AAA+ ATPase domain Thimo_0268 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_0268 IPR001789 Signal transduction response regulator, receiver domain Thimo_0268 IPR011006 CheY-like superfamily Thimo_0268 IPR009057 Homeobox-like domain superfamily Thimo_0268 IPR002197 DNA binding HTH domain, Fis-type Thimo_0268 IPR003593 AAA+ ATPase domain Thimo_0268 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0268 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0268 IPR029995 Transcriptional activator SfnR/FlbD Thimo_0268 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0268 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0269 IPR001624 Flagellar hook-basal body complex protein FliE Thimo_0270 IPR006182 Secretory protein YscJ/FliF Thimo_0270 IPR013556 Flagellar M-ring C-terminal Thimo_0270 IPR000067 Flagellar M-ring protein FliF Thimo_0271 IPR023087 Flagellar motor switch protein FliG, C-terminal Thimo_0271 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Thimo_0271 IPR000090 Flagellar motor switch protein FliG Thimo_0271 IPR011002 Flagellar motor switch protein FliG, alpha-helical Thimo_0271 IPR032779 Flagellar motor switch protein FliG, middle domain Thimo_0273 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_0273 IPR032463 ATPase, type III secretion system, FliI Thimo_0273 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0273 IPR040627 T3SS EscN ATPase, C-terminal Thimo_0273 IPR003593 AAA+ ATPase domain Thimo_0273 IPR005714 ATPase, type III secretion system, FliI/YscN Thimo_0273 IPR020005 Flagellar export ATPase FliI, clade 1 Thimo_0273 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Thimo_0277 IPR001543 Surface presentation of antigen (SpoA) Thimo_0277 IPR036429 SpoA-like superfamily Thimo_0277 IPR001689 Flagellar motor switch protein FliM Thimo_0277 IPR028976 CheC-like superfamily Thimo_0278 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb Thimo_0278 IPR012826 Flagellar motor switch FliN Thimo_0278 IPR036429 SpoA-like superfamily Thimo_0278 IPR001543 Surface presentation of antigen (SpoA) Thimo_0279 IPR022781 Flagellar biosynthesis protein, FliO Thimo_0280 IPR005838 Type III secretion system inner membrane P protein Thimo_0280 IPR005837 Flagellar transport protein FliP Thimo_0281 IPR006305 Flagellar biosynthesis protein FliQ Thimo_0281 IPR002191 Bacterial export protein family 3 Thimo_0282 IPR006303 Flagellar biosynthesis protein FliR Thimo_0282 IPR002010 Type III secretion system inner membrane R protein Thimo_0283 IPR006136 Flagellar biosynthetic protein FlhB Thimo_0283 IPR006135 Type III secretion system substrate exporter Thimo_0283 IPR029025 Type III secretion system substrate exporter, C-terminal Thimo_0284 IPR001712 Type III secretion system FHIPEP Thimo_0284 IPR025505 FHIPEP conserved site Thimo_0284 IPR042196 FHIPEP, domain 4 Thimo_0284 IPR006301 Flagellar biosynthesis protein FlhA Thimo_0284 IPR042194 FHIPEP, domain 1 Thimo_0284 IPR042193 FHIPEP, domain 3 Thimo_0285 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain Thimo_0285 IPR003593 AAA+ ATPase domain Thimo_0285 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0285 IPR020006 Flagellar biosynthesis protein FlhF Thimo_0286 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Thimo_0286 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0286 IPR025501 ATP binding protein MinD Thimo_0287 IPR000943 RNA polymerase sigma-70 Thimo_0287 IPR013325 RNA polymerase sigma factor, region 2 Thimo_0287 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0287 IPR014284 RNA polymerase sigma-70 like domain Thimo_0287 IPR007627 RNA polymerase sigma-70 region 2 Thimo_0287 IPR012845 RNA polymerase sigma factor, FliA/WhiG Thimo_0287 IPR007630 RNA polymerase sigma-70 region 4 Thimo_0287 IPR007624 RNA polymerase sigma-70 region 3 Thimo_0287 IPR028617 RNA polymerase sigma factor FliA Thimo_0293 IPR006665 OmpA-like domain Thimo_0293 IPR036737 OmpA-like domain superfamily Thimo_0293 IPR025713 Motility protein B, N-terminal domain Thimo_0294 IPR002898 MotA/TolQ/ExbB proton channel Thimo_0294 IPR000540 Flagellar motor protein MotA, conserved site Thimo_0296 IPR006359 Transcription elongation factor GreA Thimo_0296 IPR028624 Transcription elongation factor GreA/GreB Thimo_0296 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal Thimo_0296 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily Thimo_0296 IPR023459 Transcription elongation factor GreA/GreB family Thimo_0296 IPR018151 Transcription elongation factor, GreA/GreB, conserved site Thimo_0296 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily Thimo_0296 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal Thimo_0297 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain Thimo_0297 IPR011761 ATP-grasp fold Thimo_0297 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain Thimo_0297 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily Thimo_0297 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Thimo_0297 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0297 IPR036914 Methylglyoxal synthase-like domain superfamily Thimo_0297 IPR011607 Methylglyoxal synthase-like domain Thimo_0297 IPR006275 Carbamoyl-phosphate synthase, large subunit Thimo_0297 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain Thimo_0298 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily Thimo_0298 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain Thimo_0298 IPR006274 Carbamoyl-phosphate synthase, small subunit Thimo_0298 IPR029062 Class I glutamine amidotransferase-like Thimo_0298 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain Thimo_0298 IPR017926 Glutamine amidotransferase Thimo_0301 IPR017911 ABC transporter, macrolide export, ATP-binding domain Thimo_0301 IPR003838 ABC transporter permease protein domain Thimo_0301 IPR003439 ABC transporter-like Thimo_0301 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0301 IPR025857 MacB-like periplasmic core domain Thimo_0301 IPR003593 AAA+ ATPase domain Thimo_0301 IPR017871 ABC transporter, conserved site Thimo_0304 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Thimo_0304 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thimo_0304 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Thimo_0304 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Thimo_0304 IPR036291 NAD(P)-binding domain superfamily Thimo_0325 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Thimo_0325 IPR021127 CRISPR-associated endonuclease Cas2 Thimo_0326 IPR002729 CRISPR-associated protein Cas1 Thimo_0326 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain Thimo_0326 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain Thimo_0328 IPR002686 Transposase IS200-like Thimo_0328 IPR036515 Transposase IS200-like superfamily Thimo_0329 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Thimo_0329 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR Thimo_0329 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0329 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase Thimo_0329 IPR015803 Cysteine-tRNA ligase Thimo_0329 IPR032678 tRNA synthetases class I, catalytic domain Thimo_0330 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain Thimo_0330 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site Thimo_0330 IPR029000 Cyclophilin-like domain superfamily Thimo_0330 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase Thimo_0331 IPR010138 UDP-2,3-diacylglucosamine hydrolase Thimo_0331 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Thimo_0332 IPR003010 Carbon-nitrogen hydrolase Thimo_0332 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0332 IPR004563 Apolipoprotein N-acyltransferase Thimo_0332 IPR001173 Glycosyltransferase 2-like Thimo_0332 IPR039528 DPM1-like Thimo_0332 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_0334 IPR001650 Helicase, C-terminal Thimo_0334 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0334 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0334 IPR004589 DNA helicase, ATP-dependent, RecQ type Thimo_0334 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site Thimo_0334 IPR011545 DEAD/DEAH box helicase domain Thimo_0339 IPR023323 Tex-like domain superfamily Thimo_0339 IPR018974 Tex-like protein, N-terminal Thimo_0339 IPR032639 Tex protein, YqgF-like domain Thimo_0339 IPR012337 Ribonuclease H-like superfamily Thimo_0339 IPR006641 YqgF/RNase H-like domain Thimo_0339 IPR037027 YqgF/RNase H-like domain superfamily Thimo_0339 IPR041692 HHH domain 9 Thimo_0339 IPR003029 S1 domain Thimo_0339 IPR022967 RNA-binding domain, S1 Thimo_0339 IPR023319 Tex-like protein, HTH domain superfamily Thimo_0339 IPR012340 Nucleic acid-binding, OB-fold Thimo_0339 IPR010994 RuvA domain 2-like Thimo_0342 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0342 IPR039429 Serine hydroxymethyltransferase-like domain Thimo_0342 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site Thimo_0342 IPR001085 Serine hydroxymethyltransferase Thimo_0342 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_0342 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_0343 IPR003796 Ribonucleotide reductase regulator NrdR-like Thimo_0343 IPR005144 ATP-cone domain Thimo_0344 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal Thimo_0344 IPR002125 Cytidine and deoxycytidylate deaminase domain Thimo_0344 IPR004794 Riboflavin biosynthesis protein RibD Thimo_0344 IPR024072 Dihydrofolate reductase-like domain superfamily Thimo_0344 IPR016193 Cytidine deaminase-like Thimo_0344 IPR011549 Riboflavin-specific deaminase, C-terminal Thimo_0344 IPR016192 APOBEC/CMP deaminase, zinc-binding Thimo_0347 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA Thimo_0347 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Thimo_0347 IPR029052 Metallo-dependent phosphatase-like Thimo_0352 IPR010505 Molybdenum cofactor synthesis C-terminal Thimo_0352 IPR013483 Molybdenum cofactor biosynthesis protein A Thimo_0352 IPR006638 Elp3/MiaB/NifB Thimo_0352 IPR013785 Aldolase-type TIM barrel Thimo_0352 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site Thimo_0352 IPR007197 Radical SAM Thimo_0353 IPR004147 UbiB domain Thimo_0353 IPR000719 Protein kinase domain Thimo_0353 IPR011009 Protein kinase-like domain superfamily Thimo_0355 IPR002585 Cytochrome ubiquinol oxidase subunit 1 Thimo_0356 IPR003317 Cytochrome ubiquinol oxidase subunit 2 Thimo_0358 IPR017871 ABC transporter, conserved site Thimo_0358 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0358 IPR039421 Type I protein exporter Thimo_0358 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_0358 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD Thimo_0358 IPR011527 ABC transporter type 1, transmembrane domain Thimo_0358 IPR003593 AAA+ ATPase domain Thimo_0358 IPR003439 ABC transporter-like Thimo_0359 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0359 IPR017871 ABC transporter, conserved site Thimo_0359 IPR003439 ABC transporter-like Thimo_0359 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC Thimo_0359 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_0359 IPR011527 ABC transporter type 1, transmembrane domain Thimo_0359 IPR003593 AAA+ ATPase domain Thimo_0364 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0364 IPR029058 Alpha/Beta hydrolase fold Thimo_0365 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0365 IPR000639 Epoxide hydrolase-like Thimo_0365 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase Thimo_0365 IPR029058 Alpha/Beta hydrolase fold Thimo_0372 IPR041107 RimK, PreATP-grasp domain Thimo_0372 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX Thimo_0372 IPR013651 ATP-grasp fold, RimK-type Thimo_0372 IPR013815 ATP-grasp fold, subdomain 1 Thimo_0372 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Thimo_0372 IPR011761 ATP-grasp fold Thimo_0374 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain Thimo_0374 IPR007895 MASE1 Thimo_0374 IPR005467 Histidine kinase domain Thimo_0374 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0374 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0376 IPR013096 Cupin 2, conserved barrel Thimo_0376 IPR011051 RmlC-like cupin domain superfamily Thimo_0376 IPR014710 RmlC-like jelly roll fold Thimo_0377 IPR009057 Homeobox-like domain superfamily Thimo_0377 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0377 IPR003018 GAF domain Thimo_0377 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0377 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0377 IPR003593 AAA+ ATPase domain Thimo_0377 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0377 IPR029016 GAF-like domain superfamily Thimo_0377 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_0379 IPR003333 Mycolic acid cyclopropane synthase Thimo_0379 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0380 IPR028427 Peptide methionine sulfoxide reductase Thimo_0380 IPR011057 Mss4-like superfamily Thimo_0380 IPR002579 Peptide methionine sulphoxide reductase MrsB Thimo_0382 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Thimo_0382 IPR029061 Thiamin diphosphate-binding fold Thimo_0382 IPR012000 Thiamine pyrophosphate enzyme, central domain Thimo_0382 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Thimo_0382 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_0382 IPR000399 TPP-binding enzyme, conserved site Thimo_0382 IPR039368 Acetolactate synthase large subunit, TPP binding domain Thimo_0382 IPR012846 Acetolactate synthase, large subunit, biosynthetic Thimo_0383 IPR039557 AHAS, ACT domain Thimo_0383 IPR004789 Acetolactate synthase, small subunit Thimo_0383 IPR002912 ACT domain Thimo_0383 IPR019455 Acetolactate synthase, small subunit, C-terminal Thimo_0383 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Thimo_0384 IPR000506 Ketol-acid reductoisomerase, C-terminal Thimo_0384 IPR013023 Ketol-acid reductoisomerase Thimo_0384 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_0384 IPR014359 Ketol-acid reductoisomerase, prokaryotic Thimo_0384 IPR036291 NAD(P)-binding domain superfamily Thimo_0384 IPR013116 Ketol-acid reductoisomerase, N-terminal Thimo_0385 IPR005490 L,D-transpeptidase catalytic domain Thimo_0385 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_0389 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY Thimo_0389 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY Thimo_0389 IPR013785 Aldolase-type TIM barrel Thimo_0389 IPR000771 Fructose-bisphosphate aldolase, class-II Thimo_0390 IPR041492 Haloacid dehalogenase-like hydrolase Thimo_0390 IPR023214 HAD superfamily Thimo_0390 IPR036412 HAD-like superfamily Thimo_0390 IPR006439 HAD hydrolase, subfamily IA Thimo_0390 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_0392 IPR036291 NAD(P)-binding domain superfamily Thimo_0392 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_0392 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0392 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase Thimo_0394 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 Thimo_0394 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Thimo_0394 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_0402 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal Thimo_0402 IPR013785 Aldolase-type TIM barrel Thimo_0404 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0404 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0404 IPR005119 LysR, substrate-binding Thimo_0404 IPR000847 Transcription regulator HTH, LysR Thimo_0406 IPR011660 Antitoxin VapB-like Thimo_0407 IPR002716 PIN domain Thimo_0407 IPR029060 PIN-like domain superfamily Thimo_0407 IPR022907 VapC family Thimo_0411 IPR004960 Bacterial lipid A biosynthesis acyltransferase Thimo_0411 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Thimo_0412 IPR007452 Translocation and assembly module TamB Thimo_0413 IPR000184 Bacterial surface antigen (D15) Thimo_0413 IPR010827 POTRA domain, BamA/TamA-like Thimo_0413 IPR034746 POTRA domain Thimo_0413 IPR039910 Surface antigen D15-like Thimo_0413 IPR023707 Outer membrane protein assembly factor BamA Thimo_0414 IPR006122 Heavy metal-associated domain, copper ion-binding Thimo_0414 IPR017969 Heavy-metal-associated, conserved site Thimo_0414 IPR006121 Heavy metal-associated domain, HMA Thimo_0414 IPR036163 Heavy metal-associated domain superfamily Thimo_0415 IPR003836 Glucokinase Thimo_0417 IPR042072 DsrC-like protein, C-terminal domain Thimo_0417 IPR025526 DsrC-like domain superfamily Thimo_0417 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0418 IPR005900 6-phosphogluconolactonase, DevB-type Thimo_0418 IPR037171 NagB/RpiA transferase-like Thimo_0418 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase Thimo_0418 IPR039104 6-Phosphogluconolactonase Thimo_0419 IPR013482 Molybdenum cofactor guanylyltransferase Thimo_0419 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0419 IPR025877 MobA-like NTP transferase Thimo_0422 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_0422 IPR011639 Restriction modification methylase Eco57I Thimo_0422 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0423 IPR000944 Transcription regulator Rrf2-type Thimo_0423 IPR030489 Transcription regulator Rrf2-type, conserved site Thimo_0423 IPR010242 Transcription factor HTH, IscR Thimo_0423 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0423 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0424 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0424 IPR007848 Methyltransferase small domain Thimo_0424 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_0424 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase Thimo_0424 IPR004556 Methyltransferase HemK-like Thimo_0426 IPR007197 Radical SAM Thimo_0426 IPR034505 Anaerobic coproporphyrinogen-III oxidase Thimo_0426 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN Thimo_0426 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0426 IPR010723 HemN, C-terminal Thimo_0426 IPR006638 Elp3/MiaB/NifB Thimo_0427 IPR020459 AMP-binding Thimo_0427 IPR000873 AMP-dependent synthetase/ligase Thimo_0427 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_0427 IPR042099 AMP-dependent synthetase-like superfamily Thimo_0427 IPR020845 AMP-binding, conserved site Thimo_0429 IPR036611 Trigger factor ribosome-binding domain superfamily Thimo_0429 IPR008880 Trigger factor, C-terminal Thimo_0429 IPR027304 Trigger factor/SurA domain superfamily Thimo_0429 IPR005215 Trigger factor Thimo_0429 IPR008881 Trigger factor, ribosome-binding, bacterial Thimo_0429 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Thimo_0429 IPR037041 Trigger factor, C-terminal domain superfamily Thimo_0430 IPR018215 ClpP, Ser active site Thimo_0430 IPR033135 ClpP, histidine active site Thimo_0430 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0430 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Thimo_0430 IPR001907 ATP-dependent Clp protease proteolytic subunit Thimo_0431 IPR003959 ATPase, AAA-type, core Thimo_0431 IPR003593 AAA+ ATPase domain Thimo_0431 IPR019489 Clp ATPase, C-terminal Thimo_0431 IPR004487 Clp protease, ATP-binding subunit ClpX Thimo_0431 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0431 IPR010603 Zinc finger, ClpX C4-type Thimo_0431 IPR038366 Zinc finger, ClpX C4-type superfamily Thimo_0432 IPR027543 Lon protease, bacterial Thimo_0432 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0432 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0432 IPR015947 PUA-like superfamily Thimo_0432 IPR008268 Peptidase S16, active site Thimo_0432 IPR003959 ATPase, AAA-type, core Thimo_0432 IPR003111 Lon, substrate-binding domain Thimo_0432 IPR027065 Lon protease Thimo_0432 IPR008269 Peptidase S16, Lon proteolytic domain Thimo_0432 IPR004815 Lon protease, bacterial/eukaryotic-type Thimo_0432 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0432 IPR003593 AAA+ ATPase domain Thimo_0433 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Thimo_0433 IPR000119 Histone-like DNA-binding protein Thimo_0433 IPR020816 Histone-like DNA-binding protein, conserved site Thimo_0436 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Thimo_0436 IPR023034 Peptidyl-prolyl isomerase SurA Thimo_0436 IPR015391 SurA N-terminal Thimo_0436 IPR027304 Trigger factor/SurA domain superfamily Thimo_0437 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) Thimo_0437 IPR036291 NAD(P)-binding domain superfamily Thimo_0437 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0438 IPR006089 Acyl-CoA dehydrogenase, conserved site Thimo_0438 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Thimo_0438 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Thimo_0438 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Thimo_0438 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily Thimo_0438 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Thimo_0438 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Thimo_0439 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0439 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal Thimo_0439 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Thimo_0439 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_0439 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Thimo_0439 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Thimo_0439 IPR001308 Electron transfer flavoprotein alpha subunit/FixB Thimo_0440 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Thimo_0440 IPR012255 Electron transfer flavoprotein, beta subunit Thimo_0440 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site Thimo_0440 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal Thimo_0440 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0442 IPR042252 MtfA, N-terminal Thimo_0442 IPR024079 Metallopeptidase, catalytic domain superfamily Thimo_0442 IPR010384 MtfA family Thimo_0443 IPR036249 Thioredoxin-like superfamily Thimo_0443 IPR003782 Copper chaperone SCO1/SenC Thimo_0444 IPR008168 Cytochrome c, class IC Thimo_0444 IPR024167 Cytochrome c4-like Thimo_0444 IPR036909 Cytochrome c-like domain superfamily Thimo_0444 IPR009056 Cytochrome c-like domain Thimo_0447 IPR009495 Anti-sigma-F factor NrsF Thimo_0448 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 Thimo_0448 IPR039425 RNA polymerase sigma-70 like Thimo_0448 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0448 IPR014284 RNA polymerase sigma-70 like domain Thimo_0448 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0448 IPR013325 RNA polymerase sigma factor, region 2 Thimo_0448 IPR007627 RNA polymerase sigma-70 region 2 Thimo_0450 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily Thimo_0450 IPR002569 Peptide methionine sulphoxide reductase MsrA Thimo_0452 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Thimo_0452 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat Thimo_0452 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Thimo_0452 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative Thimo_0452 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal Thimo_0452 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta Thimo_0452 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily Thimo_0453 IPR001602 Uncharacterised protein family UPF0047 Thimo_0453 IPR035917 YjbQ-like superfamily Thimo_0455 IPR041122 RecJ, OB domain Thimo_0455 IPR004610 Bacterial RecJ exonuclease Thimo_0455 IPR001667 DDH domain Thimo_0455 IPR038763 DHH phosphoesterase superfamily Thimo_0455 IPR003156 DHHA1 domain Thimo_0459 IPR000477 Reverse transcriptase domain Thimo_0459 IPR024937 Domain X Thimo_0460 IPR036909 Cytochrome c-like domain superfamily Thimo_0460 IPR009056 Cytochrome c-like domain Thimo_0462 IPR011335 Restriction endonuclease type II-like Thimo_0462 IPR008538 Domain of unknown function DUF820 Thimo_0463 IPR006839 Ribosome-associated, YjgA Thimo_0463 IPR023153 PSPTO4464-like domain superfamily Thimo_0465 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Thimo_0465 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit Thimo_0465 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor Thimo_0466 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Thimo_0466 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Thimo_0466 IPR011281 Succinate dehydrogenase, flavoprotein subunit Thimo_0466 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Thimo_0466 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0466 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Thimo_0466 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site Thimo_0466 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Thimo_0467 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_0467 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0467 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_0467 IPR009051 Alpha-helical ferredoxin Thimo_0467 IPR012675 Beta-grasp domain superfamily Thimo_0467 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0467 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein Thimo_0467 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal Thimo_0468 IPR036714 Flavinator of succinate dehydrogenase superfamily Thimo_0468 IPR005631 Flavinator of succinate dehydrogenase Thimo_0469 IPR012925 TipAS antibiotic-recognition domain Thimo_0469 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain Thimo_0469 IPR000551 MerR-type HTH domain Thimo_0469 IPR009061 Putative DNA-binding domain superfamily Thimo_0471 IPR012830 Citrate utilization protein B Thimo_0471 IPR036197 NarG-like superfamily Thimo_0472 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0472 IPR010960 Flavocytochrome c Thimo_0472 IPR007329 FMN-binding Thimo_0472 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Thimo_0472 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Thimo_0473 IPR029062 Class I glutamine amidotransferase-like Thimo_0473 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0473 IPR011698 CobB/CobQ-like glutamine amidotransferase Thimo_0473 IPR004459 Cobyric acid synthase CobQ Thimo_0473 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 Thimo_0473 IPR017929 CobB/CobQ glutamine amidotransferase Thimo_0479 IPR002935 Class I-like SAM-dependent O-methyltransferase Thimo_0479 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0481 IPR018170 Aldo/keto reductase, conserved site Thimo_0481 IPR036812 NADP-dependent oxidoreductase domain superfamily Thimo_0481 IPR020471 Aldo/keto reductase Thimo_0481 IPR023210 NADP-dependent oxidoreductase domain Thimo_0484 IPR017929 CobB/CobQ glutamine amidotransferase Thimo_0484 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 Thimo_0484 IPR004459 Cobyric acid synthase CobQ Thimo_0484 IPR011698 CobB/CobQ-like glutamine amidotransferase Thimo_0484 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0484 IPR029062 Class I glutamine amidotransferase-like Thimo_0488 IPR006143 RND efflux pump, membrane fusion protein Thimo_0488 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA Thimo_0488 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Thimo_0490 IPR004361 Glyoxalase I Thimo_0490 IPR037523 Vicinal oxygen chelate (VOC) domain Thimo_0490 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Thimo_0490 IPR018146 Glyoxalase I, conserved site Thimo_0490 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Thimo_0492 IPR003689 Zinc/iron permease Thimo_0493 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0493 IPR006158 Cobalamin (vitamin B12)-binding domain Thimo_0493 IPR006638 Elp3/MiaB/NifB Thimo_0493 IPR034466 Methyltransferase, class B Thimo_0493 IPR007197 Radical SAM Thimo_0495 IPR004223 Vitamin B12-dependent methionine synthase, activation domain Thimo_0495 IPR000489 Pterin-binding domain Thimo_0495 IPR036594 Methionine synthase domain Thimo_0495 IPR011822 Cobalamin-dependent methionine synthase Thimo_0495 IPR033706 Methionine synthase, B12-binding domain Thimo_0495 IPR036589 Homocysteine-binding domain superfamily Thimo_0495 IPR003726 Homocysteine-binding domain Thimo_0495 IPR011005 Dihydropteroate synthase-like Thimo_0495 IPR036724 Cobalamin-binding domain superfamily Thimo_0495 IPR006158 Cobalamin (vitamin B12)-binding domain Thimo_0495 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Thimo_0495 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily Thimo_0499 IPR011335 Restriction endonuclease type II-like Thimo_0499 IPR008538 Domain of unknown function DUF820 Thimo_0500 IPR029062 Class I glutamine amidotransferase-like Thimo_0500 IPR017929 CobB/CobQ glutamine amidotransferase Thimo_0500 IPR011698 CobB/CobQ-like glutamine amidotransferase Thimo_0500 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0500 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA Thimo_0500 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0501 IPR004485 Cobalamin biosynthesis CobD/CbiB Thimo_0501 IPR031347 Protein AmpE Thimo_0502 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase Thimo_0502 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0503 IPR014776 Tetrapyrrole methylase, subdomain 2 Thimo_0503 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_0503 IPR035996 Tetrapyrrole methylase superfamily Thimo_0503 IPR000878 Tetrapyrrole methylase Thimo_0503 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase Thimo_0510 IPR011006 CheY-like superfamily Thimo_0510 IPR001789 Signal transduction response regulator, receiver domain Thimo_0511 IPR011009 Protein kinase-like domain superfamily Thimo_0511 IPR002575 Aminoglycoside phosphotransferase Thimo_0513 IPR003593 AAA+ ATPase domain Thimo_0513 IPR004125 Signal recognition particle, SRP54 subunit, M-domain Thimo_0513 IPR013822 Signal recognition particle SRP54, helical bundle Thimo_0513 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily Thimo_0513 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain Thimo_0513 IPR004780 Signal recognition particle protein Thimo_0513 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0513 IPR022941 Signal recognition particle, SRP54 subunit Thimo_0513 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily Thimo_0515 IPR013767 PAS fold Thimo_0515 IPR035965 PAS domain superfamily Thimo_0515 IPR000700 PAS-associated, C-terminal Thimo_0515 IPR003018 GAF domain Thimo_0515 IPR001633 EAL domain Thimo_0515 IPR000014 PAS domain Thimo_0515 IPR001610 PAC motif Thimo_0515 IPR029787 Nucleotide cyclase Thimo_0515 IPR000160 GGDEF domain Thimo_0515 IPR029016 GAF-like domain superfamily Thimo_0515 IPR035919 EAL domain superfamily Thimo_0517 IPR023030 Bifunctional protein HldE Thimo_0517 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Thimo_0517 IPR004821 Cytidyltransferase-like domain Thimo_0517 IPR029056 Ribokinase-like Thimo_0517 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0517 IPR011611 Carbohydrate kinase PfkB Thimo_0517 IPR011914 RfaE bifunctional protein, domain II Thimo_0517 IPR011913 RfaE bifunctional protein, domain I Thimo_0518 IPR001347 Sugar isomerase (SIS) Thimo_0518 IPR035461 GmhA/DiaA Thimo_0518 IPR004515 Phosphoheptose isomerase Thimo_0527 IPR030915 Sporulation killing factor system, radical SAM maturase SkfB Thimo_0527 IPR007197 Radical SAM Thimo_0527 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site Thimo_0527 IPR023885 4Fe4S-binding SPASM domain Thimo_0527 IPR013785 Aldolase-type TIM barrel Thimo_0527 IPR006638 Elp3/MiaB/NifB Thimo_0530 IPR017867 Protein-tyrosine phosphatase, low molecular weight Thimo_0530 IPR036196 Phosphotyrosine protein phosphatase I superfamily Thimo_0530 IPR023485 Phosphotyrosine protein phosphatase I Thimo_0531 IPR012340 Nucleic acid-binding, OB-fold Thimo_0531 IPR022967 RNA-binding domain, S1 Thimo_0531 IPR004659 Ribonuclease E/G Thimo_0531 IPR021968 Polyribonucleotide phosphorylase C-terminal Thimo_0531 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G Thimo_0531 IPR028878 Ribonuclease E Thimo_0531 IPR003029 S1 domain Thimo_0532 IPR006225 Pseudouridine synthase, RluC/RluD Thimo_0532 IPR006145 Pseudouridine synthase, RsuA/RluA Thimo_0532 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Thimo_0532 IPR036986 RNA-binding S4 domain superfamily Thimo_0532 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_0532 IPR002942 RNA-binding S4 domain Thimo_0533 IPR041492 Haloacid dehalogenase-like hydrolase Thimo_0533 IPR006439 HAD hydrolase, subfamily IA Thimo_0533 IPR036412 HAD-like superfamily Thimo_0533 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_0533 IPR023214 HAD superfamily Thimo_0533 IPR037512 Phosphoglycolate phosphatase, prokaryotic Thimo_0533 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic Thimo_0534 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0534 IPR004635 Peptidase S49, SppA Thimo_0534 IPR002142 Peptidase S49 Thimo_0535 IPR036779 LysM domain superfamily Thimo_0535 IPR023346 Lysozyme-like domain superfamily Thimo_0535 IPR018392 LysM domain Thimo_0535 IPR008258 Transglycosylase SLT domain 1 Thimo_0535 IPR000189 Prokaryotic transglycosylase, active site Thimo_0536 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_0536 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein Thimo_0539 IPR001036 Acriflavin resistance protein Thimo_0539 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0540 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0540 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0540 IPR005467 Histidine kinase domain Thimo_0540 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0540 IPR019247 Histidine kinase BarA, N-terminal Thimo_0540 IPR011006 CheY-like superfamily Thimo_0540 IPR036641 HPT domain superfamily Thimo_0540 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Thimo_0540 IPR001789 Signal transduction response regulator, receiver domain Thimo_0540 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0540 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0540 IPR003660 HAMP domain Thimo_0542 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_0542 IPR016450 Uncharacterised conserved protein UCP005522 Thimo_0544 IPR037187 DksA, N-terminal domain superfamily Thimo_0544 IPR000962 Zinc finger, DksA/TraR C4-type Thimo_0544 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Thimo_0544 IPR012784 RNA polymerase-binding transcription factor DksA Thimo_0545 IPR025526 DsrC-like domain superfamily Thimo_0545 IPR042072 DsrC-like protein, C-terminal domain Thimo_0545 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0552 IPR007624 RNA polymerase sigma-70 region 3 Thimo_0552 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0552 IPR012760 RNA polymerase sigma factor RpoD, C-terminal Thimo_0552 IPR007627 RNA polymerase sigma-70 region 2 Thimo_0552 IPR007631 RNA polymerase sigma factor 70, non-essential domain Thimo_0552 IPR013325 RNA polymerase sigma factor, region 2 Thimo_0552 IPR009042 RNA polymerase sigma-70 region 1.2 Thimo_0552 IPR028630 RNA polymerase sigma factor RpoD Thimo_0552 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0552 IPR000943 RNA polymerase sigma-70 Thimo_0552 IPR007127 RNA polymerase sigma factor 70, region 1.1 Thimo_0552 IPR007630 RNA polymerase sigma-70 region 4 Thimo_0552 IPR042189 Sigma-70 factor, region 1.1 superfamily Thimo_0552 IPR014284 RNA polymerase sigma-70 like domain Thimo_0553 IPR006295 DNA primase, DnaG Thimo_0553 IPR019475 DNA primase, DnaB-helicase binding domain Thimo_0553 IPR036977 DNA Primase, CHC2-type zinc finger Thimo_0553 IPR013264 DNA primase, catalytic core, N-terminal Thimo_0553 IPR030846 DNA primase DnaG, bacteria Thimo_0553 IPR013173 DNA primase DnaG, DnaB-binding domain Thimo_0553 IPR006171 TOPRIM domain Thimo_0553 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Thimo_0553 IPR002694 Zinc finger, CHC2-type Thimo_0553 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Thimo_0553 IPR034151 Bacterial DnaG primase, TOPRIM domain Thimo_0555 IPR018278 Ribosomal protein S21, conserved site Thimo_0555 IPR001911 Ribosomal protein S21 Thimo_0555 IPR038380 Ribosomal protein S21 superfamily Thimo_0557 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD Thimo_0557 IPR017860 Peptidase M22, conserved site Thimo_0557 IPR017861 Kae1/TsaD family Thimo_0557 IPR000905 Gcp-like domain Thimo_0558 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY Thimo_0559 IPR006157 Dihydroneopterin aldolase/epimerase domain Thimo_0559 IPR006156 Dihydroneopterin aldolase Thimo_0560 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK Thimo_0560 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily Thimo_0562 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_0562 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 IPR036291 NAD(P)-binding domain superfamily Thimo_0562 IPR017711 Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase Thimo_0566 IPR002781 Transmembrane protein TauE-like Thimo_0569 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0569 IPR023753 FAD/NAD(P)-binding domain Thimo_0570 IPR029069 HotDog domain superfamily Thimo_0570 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family Thimo_0570 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site Thimo_0570 IPR006683 Thioesterase domain Thimo_0570 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase Thimo_0571 IPR002898 MotA/TolQ/ExbB proton channel Thimo_0571 IPR014163 Tol-Pal system, TolQ Thimo_0572 IPR003400 Biopolymer transport protein ExbD/TolR Thimo_0572 IPR014168 Tol-Pal system protein TolR Thimo_0574 IPR036752 TolB, N-terminal domain superfamily Thimo_0574 IPR007195 TolB, N-terminal Thimo_0574 IPR014167 Tol-Pal system protein TolB Thimo_0574 IPR011659 WD40-like Beta Propeller Thimo_0574 IPR011042 Six-bladed beta-propeller, TolB-like Thimo_0575 IPR039001 Peptidoglycan-associated lipoprotein Thimo_0575 IPR006690 Outer membrane protein, OmpA-like, conserved site Thimo_0575 IPR036737 OmpA-like domain superfamily Thimo_0575 IPR006665 OmpA-like domain Thimo_0575 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal Thimo_0575 IPR006664 Outer membrane protein, bacterial Thimo_0577 IPR007197 Radical SAM Thimo_0577 IPR024924 7-carboxy-7-deazaguanine synthase-like Thimo_0577 IPR013785 Aldolase-type TIM barrel Thimo_0581 IPR000037 SsrA-binding protein Thimo_0581 IPR023620 Small protein B Thimo_0581 IPR020081 SsrA-binding protein, conserved site Thimo_0582 IPR013785 Aldolase-type TIM barrel Thimo_0582 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic Thimo_0582 IPR000652 Triosephosphate isomerase Thimo_0582 IPR020861 Triosephosphate isomerase, active site Thimo_0582 IPR035990 Triosephosphate isomerase superfamily Thimo_0583 IPR004692 Preprotein translocase SecG subunit Thimo_0585 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Thimo_0585 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 Thimo_0585 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid Thimo_0586 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Thimo_0586 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_0587 IPR010218 NADH dehydrogenase, subunit C Thimo_0587 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Thimo_0587 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Thimo_0587 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site Thimo_0588 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Thimo_0588 IPR001135 NADH-quinone oxidoreductase, subunit D Thimo_0588 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_0588 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Thimo_0588 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Thimo_0589 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal Thimo_0589 IPR036249 Thioredoxin-like superfamily Thimo_0589 IPR002023 NADH-quinone oxidoreductase subunit E-like Thimo_0589 IPR042128 NuoE domain Thimo_0590 IPR019554 Soluble ligand binding domain Thimo_0590 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Thimo_0590 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain Thimo_0590 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site Thimo_0590 IPR011537 NADH ubiquinone oxidoreductase, F subunit Thimo_0590 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Thimo_0590 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Thimo_0591 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_0591 IPR006656 Molybdopterin oxidoreductase Thimo_0591 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal Thimo_0591 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Thimo_0591 IPR010228 NADH:ubiquinone oxidoreductase, subunit G Thimo_0591 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_0591 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Thimo_0591 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site Thimo_0591 IPR010228 NADH:ubiquinone oxidoreductase, subunit G Thimo_0591 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal Thimo_0591 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_0591 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding Thimo_0591 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding Thimo_0591 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site Thimo_0591 IPR006656 Molybdopterin oxidoreductase Thimo_0591 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_0592 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H Thimo_0592 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site Thimo_0593 IPR010226 NADH-quinone oxidoreductase, chain I Thimo_0593 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0593 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0594 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ Thimo_0594 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 Thimo_0595 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Thimo_0595 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K Thimo_0596 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup Thimo_0596 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_0596 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 Thimo_0596 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Thimo_0597 IPR003918 NADH:ubiquinone oxidoreductase Thimo_0597 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal Thimo_0597 IPR010227 NADH-quinone oxidoreductase, chain M/4 Thimo_0597 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_0598 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_0598 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 Thimo_0602 IPR030870 Cell division protein ZapE Thimo_0602 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0602 IPR005654 ATPase, AFG1-like Thimo_0604 IPR018060 DNA binding HTH domain, AraC-type Thimo_0604 IPR009057 Homeobox-like domain superfamily Thimo_0604 IPR020449 Transcription regulator HTH, AraC- type Thimo_0604 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Thimo_0605 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Thimo_0605 IPR014756 Immunoglobulin E-set Thimo_0605 IPR013783 Immunoglobulin-like fold Thimo_0605 IPR036966 Carbohydrate-binding module 3 superfamily Thimo_0605 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily Thimo_0605 IPR005102 Carbohydrate binding X2 domain Thimo_0605 IPR001956 Carbohydrate-binding module 3 Thimo_0610 IPR011009 Protein kinase-like domain superfamily Thimo_0610 IPR000719 Protein kinase domain Thimo_0610 IPR008271 Serine/threonine-protein kinase, active site Thimo_0612 IPR025824 OB-fold nucleic acid binding domain Thimo_0612 IPR003753 Exonuclease VII, large subunit Thimo_0612 IPR020579 Exonuclease VII, large subunit, C-terminal Thimo_0613 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0613 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0613 IPR005116 Transport-associated OB, type 1 Thimo_0613 IPR004606 Molybdenum-pterin binding Thimo_0613 IPR003725 Molybdenum-binding protein ModE, N-terminal Thimo_0613 IPR016462 Molybdate-dependent transcriptional regulator ModE Thimo_0613 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0613 IPR000847 Transcription regulator HTH, LysR Thimo_0614 IPR005950 Molybdate ABC transporter, substrate-binding protein Thimo_0615 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_0615 IPR011867 Molybdate ABC transporter, permease protein Thimo_0615 IPR035906 MetI-like superfamily Thimo_0616 IPR004606 Molybdenum-pterin binding Thimo_0616 IPR011868 Molybdate ABC transporter, ATP-binding protein Thimo_0616 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0616 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0616 IPR005116 Transport-associated OB, type 1 Thimo_0616 IPR017871 ABC transporter, conserved site Thimo_0616 IPR015852 ABC transporter, molybdenum import, ModC Thimo_0616 IPR003593 AAA+ ATPase domain Thimo_0616 IPR003439 ABC transporter-like Thimo_0617 IPR006242 Putative pyrophosphorylase ModD Thimo_0617 IPR013785 Aldolase-type TIM barrel Thimo_0617 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal Thimo_0617 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily Thimo_0617 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal Thimo_0617 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Thimo_0617 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal Thimo_0618 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thimo_0618 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site Thimo_0618 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thimo_0618 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase Thimo_0618 IPR036291 NAD(P)-binding domain superfamily Thimo_0623 IPR000160 GGDEF domain Thimo_0623 IPR029016 GAF-like domain superfamily Thimo_0623 IPR029787 Nucleotide cyclase Thimo_0623 IPR016132 Phytochrome chromophore attachment domain Thimo_0623 IPR001294 Phytochrome Thimo_0623 IPR001633 EAL domain Thimo_0623 IPR035919 EAL domain superfamily Thimo_0623 IPR003018 GAF domain Thimo_0623 IPR013515 Phytochrome, central region Thimo_0624 IPR001789 Signal transduction response regulator, receiver domain Thimo_0624 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0624 IPR003660 HAMP domain Thimo_0624 IPR011006 CheY-like superfamily Thimo_0624 IPR036641 HPT domain superfamily Thimo_0624 IPR019247 Histidine kinase BarA, N-terminal Thimo_0624 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0624 IPR005467 Histidine kinase domain Thimo_0624 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0624 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0624 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Thimo_0624 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0625 IPR000014 PAS domain Thimo_0625 IPR013656 PAS fold-4 Thimo_0625 IPR035965 PAS domain superfamily Thimo_0625 IPR000700 PAS-associated, C-terminal Thimo_0625 IPR029787 Nucleotide cyclase Thimo_0625 IPR000160 GGDEF domain Thimo_0631 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Thimo_0631 IPR004681 TRAP transporter large membrane protein DctM Thimo_0635 IPR003838 ABC transporter permease protein domain Thimo_0635 IPR025857 MacB-like periplasmic core domain Thimo_0636 IPR003439 ABC transporter-like Thimo_0636 IPR017871 ABC transporter, conserved site Thimo_0636 IPR017911 ABC transporter, macrolide export, ATP-binding domain Thimo_0636 IPR025857 MacB-like periplasmic core domain Thimo_0636 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0636 IPR003838 ABC transporter permease protein domain Thimo_0636 IPR003593 AAA+ ATPase domain Thimo_0637 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_0637 IPR022824 Multidrug resistance protein MdtA Thimo_0637 IPR006143 RND efflux pump, membrane fusion protein Thimo_0648 IPR006321 Pilus retraction protein PilT Thimo_0648 IPR001482 Type II/IV secretion system protein Thimo_0648 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0648 IPR003593 AAA+ ATPase domain Thimo_0649 IPR037257 General secretory system II, protein E, N-terminal superfamily Thimo_0649 IPR001482 Type II/IV secretion system protein Thimo_0649 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0649 IPR042181 Type II secretion system, protein E, N-terminal Thimo_0649 IPR003593 AAA+ ATPase domain Thimo_0649 IPR013369 Type II secretion system GspE Thimo_0650 IPR018076 Type II secretion system F domain Thimo_0650 IPR042094 Type II secretion system F domain superfamily Thimo_0650 IPR001992 Type II secretion system conserved site Thimo_0650 IPR003004 GspF/PilC family Thimo_0650 IPR011850 General secretion pathway protein F Thimo_0652 IPR005644 NolW-like Thimo_0652 IPR001775 GspD/PilQ family Thimo_0652 IPR004845 Type II secretion system GspD, conserved site Thimo_0652 IPR038591 NolW-like superfamily Thimo_0652 IPR013356 Type II secretion system GspD Thimo_0652 IPR004846 Type II/III secretion system Thimo_0654 IPR023346 Lysozyme-like domain superfamily Thimo_0654 IPR000189 Prokaryotic transglycosylase, active site Thimo_0654 IPR008258 Transglycosylase SLT domain 1 Thimo_0655 IPR007329 FMN-binding Thimo_0655 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG Thimo_0657 IPR004923 Iron permease FTR1/Fip1/EfeU Thimo_0658 IPR038765 Papain-like cysteine peptidase superfamily Thimo_0658 IPR021878 Protein-glutamine gamma-glutamyltransferase TgpA, N-terminal Thimo_0658 IPR002931 Transglutaminase-like Thimo_0658 IPR025403 Domain of unknown function DUF4129 Thimo_0660 IPR011703 ATPase, AAA-3 Thimo_0660 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0660 IPR041628 ChlI/MoxR, AAA lid domain Thimo_0665 IPR001789 Signal transduction response regulator, receiver domain Thimo_0665 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Thimo_0665 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0665 IPR011006 CheY-like superfamily Thimo_0665 IPR005467 Histidine kinase domain Thimo_0665 IPR036641 HPT domain superfamily Thimo_0665 IPR019247 Histidine kinase BarA, N-terminal Thimo_0665 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0665 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0665 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0665 IPR003660 HAMP domain Thimo_0665 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0666 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0666 IPR006082 Phosphoribulokinase Thimo_0666 IPR006083 Phosphoribulokinase/uridine kinase Thimo_0667 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_0667 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_0667 IPR000644 CBS domain Thimo_0667 IPR005170 Transporter-associated domain Thimo_0668 IPR020549 Endoribonuclease YbeY, conserved site Thimo_0668 IPR002036 Endoribonuclease YbeY Thimo_0668 IPR023091 Metalloprotease catalytic domain superfamily, predicted Thimo_0669 IPR003714 PhoH-like protein Thimo_0669 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0670 IPR020612 Methylthiotransferase, conserved site Thimo_0670 IPR013848 Methylthiotransferase, N-terminal Thimo_0670 IPR005839 Methylthiotransferase Thimo_0670 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0670 IPR007197 Radical SAM Thimo_0670 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB Thimo_0670 IPR002792 TRAM domain Thimo_0670 IPR006638 Elp3/MiaB/NifB Thimo_0670 IPR038135 Methylthiotransferase, N-terminal domain superfamily Thimo_0673 IPR017926 Glutamine amidotransferase Thimo_0673 IPR029062 Class I glutamine amidotransferase-like Thimo_0674 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0674 IPR002288 DNA gyrase B subunit, C-terminal Thimo_0674 IPR011557 DNA gyrase, subunit B Thimo_0674 IPR041423 DNA gyrase subunit B insert domain Thimo_0674 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0674 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0674 IPR001241 DNA topoisomerase, type IIA Thimo_0674 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0674 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal Thimo_0674 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 Thimo_0674 IPR034160 DNA gyrase subunit B, TOPRIM domain Thimo_0674 IPR006171 TOPRIM domain Thimo_0674 IPR018522 DNA topoisomerase, type IIA, conserved site Thimo_0674 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Thimo_0675 IPR033186 Helicase HerA-like C-terminal Thimo_0675 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0677 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0677 IPR001650 Helicase, C-terminal Thimo_0677 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0677 IPR011545 DEAD/DEAH box helicase domain Thimo_0677 IPR018973 DEAD/DEAH-box helicase, putative Thimo_0680 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily Thimo_0680 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain Thimo_0680 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal Thimo_0680 IPR001017 Dehydrogenase, E1 component Thimo_0680 IPR029061 Thiamin diphosphate-binding fold Thimo_0680 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0680 IPR011603 2-oxoglutarate dehydrogenase E1 component Thimo_0681 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Thimo_0681 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain Thimo_0681 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Thimo_0681 IPR006255 Dihydrolipoamide succinyltransferase Thimo_0681 IPR011053 Single hybrid motif Thimo_0681 IPR004167 Peripheral subunit-binding domain Thimo_0681 IPR036625 E3-binding domain superfamily Thimo_0681 IPR000089 Biotin/lipoyl attachment Thimo_0685 IPR003695 Ppx/GppA phosphatase Thimo_0685 IPR030673 Pyrophosphatase, GppA/Ppx-type Thimo_0685 IPR022371 Exopolyphosphatase Thimo_0687 IPR003325 TerD domain Thimo_0689 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0689 IPR003593 AAA+ ATPase domain Thimo_0689 IPR001482 Type II/IV secretion system protein Thimo_0689 IPR006321 Pilus retraction protein PilT Thimo_0690 IPR006321 Pilus retraction protein PilT Thimo_0690 IPR001482 Type II/IV secretion system protein Thimo_0690 IPR003593 AAA+ ATPase domain Thimo_0690 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0691 IPR035893 PurE domain superfamily Thimo_0691 IPR024694 PurE, prokaryotic type Thimo_0691 IPR000031 PurE domain Thimo_0691 IPR033747 Class I PurE Thimo_0692 IPR011054 Rudiment single hybrid motif Thimo_0692 IPR011761 ATP-grasp fold Thimo_0692 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Thimo_0692 IPR013815 ATP-grasp fold, subdomain 1 Thimo_0692 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain Thimo_0692 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0692 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit Thimo_0693 IPR012902 Prokaryotic N-terminal methylation site Thimo_0693 IPR001082 Fimbrial protein pilin Thimo_0696 IPR008250 P-type ATPase, A domain superfamily Thimo_0696 IPR023214 HAD superfamily Thimo_0696 IPR001757 P-type ATPase Thimo_0696 IPR004014 Cation-transporting P-type ATPase, N-terminal Thimo_0696 IPR036412 HAD-like superfamily Thimo_0696 IPR006068 Cation-transporting P-type ATPase, C-terminal Thimo_0696 IPR023299 P-type ATPase, cytoplasmic domain N Thimo_0696 IPR018303 P-type ATPase, phosphorylation site Thimo_0696 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_0697 IPR007296 Domain of unknown function DUF403 Thimo_0697 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_0698 IPR016450 Uncharacterised conserved protein UCP005522 Thimo_0698 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_0700 IPR023483 Uncharacterised protein family SprT Thimo_0700 IPR006640 SprT-like Thimo_0700 IPR035240 SprT-like, zinc ribbon domain Thimo_0701 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily Thimo_0701 IPR028998 Ribosome maturation factor RimP, C-terminal Thimo_0701 IPR035956 RimP, N-terminal domain superfamily Thimo_0701 IPR028989 Ribosome maturation factor RimP, N-terminal Thimo_0701 IPR003728 Ribosome maturation factor RimP Thimo_0702 IPR025249 KH domain, NusA-like Thimo_0702 IPR036555 NusA, N-terminal domain superfamily Thimo_0702 IPR015946 K homology domain-like, alpha/beta Thimo_0702 IPR010213 Transcription termination factor NusA Thimo_0702 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical Thimo_0702 IPR010214 Transcription termination factor NusA, C-terminal duplication Thimo_0702 IPR013735 Transcription factor NusA, N-terminal Thimo_0702 IPR003029 S1 domain Thimo_0702 IPR030842 Transcription termination/antitermination protein NusA, bacterial Thimo_0702 IPR012340 Nucleic acid-binding, OB-fold Thimo_0702 IPR022967 RNA-binding domain, S1 Thimo_0702 IPR009019 K homology domain superfamily, prokaryotic type Thimo_0703 IPR009061 Putative DNA-binding domain superfamily Thimo_0703 IPR004161 Translation elongation factor EFTu-like, domain 2 Thimo_0703 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Thimo_0703 IPR023115 Translation initiation factor IF- 2, domain 3 Thimo_0703 IPR015760 Translation initiation factor IF- 2 Thimo_0703 IPR000178 Translation initiation factor aIF-2, bacterial-like Thimo_0703 IPR000795 Transcription factor, GTP-binding domain Thimo_0703 IPR005225 Small GTP-binding protein domain Thimo_0703 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0703 IPR006847 Translation initiation factor IF-2, N-terminal Thimo_0703 IPR013575 Initiation factor 2 associated domain, bacterial Thimo_0703 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_0704 IPR000238 Ribosome-binding factor A Thimo_0704 IPR015946 K homology domain-like, alpha/beta Thimo_0704 IPR020053 Ribosome-binding factor A, conserved site Thimo_0704 IPR023799 Ribosome-binding factor A domain superfamily Thimo_0705 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_0705 IPR032819 tRNA pseudouridylate synthase B, C-terminal Thimo_0705 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal Thimo_0705 IPR014780 tRNA pseudouridine synthase II, TruB Thimo_0705 IPR036974 PUA domain superfamily Thimo_0705 IPR015947 PUA-like superfamily Thimo_0705 IPR002501 Pseudouridine synthase II, N-terminal Thimo_0706 IPR000589 Ribosomal protein S15 Thimo_0706 IPR009068 S15/NS1, RNA-binding Thimo_0706 IPR005290 Ribosomal protein S15, bacterial-type Thimo_0707 IPR004087 K Homology domain Thimo_0707 IPR001247 Exoribonuclease, phosphorolytic domain 1 Thimo_0707 IPR015847 Exoribonuclease, phosphorolytic domain 2 Thimo_0707 IPR036345 Exoribonuclease, PH domain 2 superfamily Thimo_0707 IPR004088 K Homology domain, type 1 Thimo_0707 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0707 IPR036612 K Homology domain, type 1 superfamily Thimo_0707 IPR012340 Nucleic acid-binding, OB-fold Thimo_0707 IPR012162 Polyribonucleotide nucleotidyltransferase Thimo_0707 IPR003029 S1 domain Thimo_0707 IPR027408 PNPase/RNase PH domain superfamily Thimo_0707 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain Thimo_0707 IPR022967 RNA-binding domain, S1 Thimo_0708 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_0708 IPR025692 Mechanosensitive ion channel inner membrane domain 1 Thimo_0708 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_0708 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Thimo_0708 IPR024393 Mechanosensitive ion channel MscS, porin domain Thimo_0708 IPR011066 Mechanosensitive ion channel MscS, C-terminal Thimo_0708 IPR006685 Mechanosensitive ion channel MscS Thimo_0708 IPR006686 Mechanosensitive ion channel MscS, conserved site Thimo_0708 IPR010920 LSM domain superfamily Thimo_0709 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0709 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Thimo_0709 IPR019888 Transcription regulator AsnC-type Thimo_0709 IPR011008 Dimeric alpha-beta barrel Thimo_0709 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0709 IPR000485 AsnC-type HTH domain Thimo_0709 IPR011991 ArsR-like helix-turn-helix domain Thimo_0710 IPR005668 2-isopropylmalate synthase Thimo_0710 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site Thimo_0710 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily Thimo_0710 IPR000891 Pyruvate carboxyltransferase Thimo_0710 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Thimo_0710 IPR013785 Aldolase-type TIM barrel Thimo_0710 IPR039371 LeuA, N-terminal catalytic TIM barrel domain Thimo_0711 IPR018264 Ribosomal protein L33, conserved site Thimo_0711 IPR011332 Zinc-binding ribosomal protein Thimo_0711 IPR038584 Ribosomal protein L33 superfamily Thimo_0711 IPR001705 Ribosomal protein L33 Thimo_0712 IPR037147 Ribosomal protein L28/L24 superfamily Thimo_0712 IPR026569 Ribosomal protein L28/L24 Thimo_0712 IPR034704 L28p-like Thimo_0712 IPR001383 Ribosomal protein L28 Thimo_0713 IPR000241 Putative RNA methylase domain Thimo_0713 IPR004114 THUMP domain Thimo_0713 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0713 IPR017244 Ribosomal RNA large subunit methyltransferase K/L Thimo_0713 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_0713 IPR019614 S-adenosylmethionine-dependent methyltransferase Thimo_0714 IPR001765 Carbonic anhydrase Thimo_0714 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site Thimo_0714 IPR036874 Carbonic anhydrase superfamily Thimo_0717 IPR002912 ACT domain Thimo_0717 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme Thimo_0717 IPR002934 Polymerase, nucleotidyl transferase domain Thimo_0717 IPR006674 HD domain Thimo_0717 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase Thimo_0717 IPR003607 HD/PDEase domain Thimo_0718 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 Thimo_0718 IPR036005 Creatinase/aminopeptidase-like Thimo_0718 IPR000994 Peptidase M24 Thimo_0718 IPR001714 Peptidase M24, methionine aminopeptidase Thimo_0719 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Thimo_0719 IPR018130 Ribosomal protein S2, conserved site Thimo_0719 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid Thimo_0719 IPR001865 Ribosomal protein S2 Thimo_0720 IPR009060 UBA-like superfamily Thimo_0720 IPR036402 Elongation factor Ts, dimerisation domain superfamily Thimo_0720 IPR001816 Translation elongation factor EFTs/EF1B Thimo_0720 IPR018101 Translation elongation factor Ts, conserved site Thimo_0720 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation Thimo_0721 IPR011817 Uridylate kinase Thimo_0721 IPR001048 Aspartate/glutamate/uridylate kinase Thimo_0721 IPR036393 Acetylglutamate kinase-like superfamily Thimo_0721 IPR015963 Uridylate kinase, bacteria Thimo_0722 IPR002661 Ribosome recycling factor Thimo_0722 IPR023584 Ribosome recycling factor domain Thimo_0722 IPR036191 RRF superfamily Thimo_0723 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site Thimo_0723 IPR001441 Decaprenyl diphosphate synthase-like Thimo_0723 IPR036424 Decaprenyl diphosphate synthase-like superfamily Thimo_0724 IPR000374 Phosphatidate cytidylyltransferase Thimo_0725 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thimo_0725 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal Thimo_0725 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal Thimo_0725 IPR036169 DXP reductoisomerase, C-terminal domain superfamily Thimo_0725 IPR026877 DXP reductoisomerase C-terminal domain Thimo_0725 IPR036291 NAD(P)-binding domain superfamily Thimo_0726 IPR041489 PDZ domain 6 Thimo_0726 IPR008915 Peptidase M50 Thimo_0726 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase Thimo_0726 IPR036034 PDZ superfamily Thimo_0726 IPR001478 PDZ domain Thimo_0727 IPR034746 POTRA domain Thimo_0727 IPR023707 Outer membrane protein assembly factor BamA Thimo_0727 IPR039910 Surface antigen D15-like Thimo_0727 IPR010827 POTRA domain, BamA/TamA-like Thimo_0727 IPR000184 Bacterial surface antigen (D15) Thimo_0729 IPR011004 Trimeric LpxA-like superfamily Thimo_0729 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD Thimo_0729 IPR018357 Hexapeptide transferase, conserved site Thimo_0729 IPR001451 Hexapeptide repeat Thimo_0729 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region Thimo_0730 IPR029069 HotDog domain superfamily Thimo_0730 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Thimo_0730 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Thimo_0731 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal Thimo_0731 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily Thimo_0731 IPR001451 Hexapeptide repeat Thimo_0731 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Thimo_0731 IPR011004 Trimeric LpxA-like superfamily Thimo_0731 IPR018357 Hexapeptide transferase, conserved site Thimo_0732 IPR003835 Glycosyl transferase, family 19 Thimo_0733 IPR022898 Ribonuclease HII Thimo_0733 IPR001352 Ribonuclease HII/HIII Thimo_0733 IPR024567 Ribonuclease HII/HIII domain Thimo_0733 IPR012337 Ribonuclease H-like superfamily Thimo_0733 IPR036397 Ribonuclease H superfamily Thimo_0734 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial Thimo_0734 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type Thimo_0734 IPR011005 Dihydropteroate synthase-like Thimo_0736 IPR001602 Uncharacterised protein family UPF0047 Thimo_0736 IPR035917 YjbQ-like superfamily Thimo_0737 IPR011551 NTP pyrophosphohydrolase MazG Thimo_0737 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Thimo_0738 IPR037518 MPN domain Thimo_0738 IPR001405 Uncharacterised protein family UPF0758 Thimo_0738 IPR010994 RuvA domain 2-like Thimo_0738 IPR020891 Uncharacterised protein family UPF0758, conserved site Thimo_0738 IPR025657 RadC-like JAB domain Thimo_0739 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC Thimo_0739 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal Thimo_0739 IPR036551 Flavin prenyltransferase-like Thimo_0739 IPR003382 Flavoprotein Thimo_0739 IPR035929 CoaB-like superfamily Thimo_0740 IPR033704 dUTPase, trimeric Thimo_0740 IPR036157 dUTPase-like superfamily Thimo_0740 IPR029054 dUTPase-like Thimo_0740 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase Thimo_0741 IPR005843 Alpha-D-phosphohexomutase, C-terminal Thimo_0741 IPR005841 Alpha-D-phosphohexomutase superfamily Thimo_0741 IPR016066 Alpha-D-phosphohexomutase, conserved site Thimo_0741 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Thimo_0741 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Thimo_0741 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Thimo_0741 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Thimo_0741 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Thimo_0742 IPR004662 Acetylglutamate kinase family Thimo_0742 IPR036393 Acetylglutamate kinase-like superfamily Thimo_0742 IPR001057 Glutamate/acetylglutamate kinase Thimo_0742 IPR041727 N-Acetyl-L-glutamate kinase, cyclic Thimo_0742 IPR001048 Aspartate/glutamate/uridylate kinase Thimo_0742 IPR037528 Acetylglutamate kinase ArgB Thimo_0744 IPR023031 Orotate phosphoribosyltransferase Thimo_0744 IPR029057 Phosphoribosyltransferase-like Thimo_0744 IPR000836 Phosphoribosyltransferase domain Thimo_0744 IPR004467 Orotate phosphoribosyl transferase domain Thimo_0747 IPR003746 Protein of unknown function DUF167 Thimo_0747 IPR005228 Conserved hypothetical protein CHP00251 Thimo_0747 IPR036591 YggU-like superfamily Thimo_0748 IPR003425 CCB3/YggT Thimo_0749 IPR036291 NAD(P)-binding domain superfamily Thimo_0749 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Thimo_0749 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain Thimo_0749 IPR000304 Pyrroline-5-carboxylate reductase Thimo_0749 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_0750 IPR029066 PLP-binding barrel Thimo_0750 IPR001608 Alanine racemase, N-terminal Thimo_0750 IPR011078 Pyridoxal phosphate homeostasis protein Thimo_0751 IPR020922 dITP/XTP pyrophosphatase Thimo_0751 IPR002637 Ham1-like protein Thimo_0751 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_0752 IPR001247 Exoribonuclease, phosphorolytic domain 1 Thimo_0752 IPR015847 Exoribonuclease, phosphorolytic domain 2 Thimo_0752 IPR036345 Exoribonuclease, PH domain 2 superfamily Thimo_0752 IPR027408 PNPase/RNase PH domain superfamily Thimo_0752 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0752 IPR002381 Ribonuclease PH, bacterial-type Thimo_0752 IPR018336 Ribonuclease PH, conserved site Thimo_0753 IPR032710 NTF2-like domain superfamily Thimo_0753 IPR000719 Protein kinase domain Thimo_0753 IPR011009 Protein kinase-like domain superfamily Thimo_0753 IPR008271 Serine/threonine-protein kinase, active site Thimo_0753 IPR017441 Protein kinase, ATP binding site Thimo_0754 IPR005229 Conserved hypothetical protein CHP00255 Thimo_0754 IPR013551 Domain of unknown function DUF1732 Thimo_0754 IPR013527 YicC-like, N-terminal Thimo_0755 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Thimo_0755 IPR017665 Guanylate kinase Thimo_0755 IPR020590 Guanylate kinase, conserved site Thimo_0755 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0755 IPR008144 Guanylate kinase-like domain Thimo_0756 IPR003716 DNA-directed RNA polymerase, omega subunit Thimo_0756 IPR006110 RNA polymerase, subunit omega/K/RPB6 Thimo_0756 IPR012293 RNA polymerase subunit, RPB6/omega Thimo_0756 IPR036161 RPB6/omega subunit-like superfamily Thimo_0757 IPR007685 RelA/SpoT Thimo_0757 IPR004811 RelA/SpoT family Thimo_0757 IPR003607 HD/PDEase domain Thimo_0757 IPR012675 Beta-grasp domain superfamily Thimo_0757 IPR002912 ACT domain Thimo_0757 IPR004095 TGS Thimo_0757 IPR012676 TGS-like Thimo_0757 IPR033655 RelA, TGS domain Thimo_0759 IPR006175 YjgF/YER057c/UK114 family Thimo_0759 IPR006056 RidA family Thimo_0759 IPR019897 RidA, conserved site Thimo_0759 IPR035959 RutC-like superfamily Thimo_0760 IPR028923 SAICAR synthetase/ADE2, N-terminal Thimo_0760 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase Thimo_0760 IPR018236 SAICAR synthetase, conserved site Thimo_0761 IPR029787 Nucleotide cyclase Thimo_0761 IPR005330 MHYT domain Thimo_0761 IPR000160 GGDEF domain Thimo_0761 IPR001633 EAL domain Thimo_0761 IPR035919 EAL domain superfamily Thimo_0762 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain Thimo_0762 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0762 IPR001279 Metallo-beta-lactamase Thimo_0762 IPR017782 Hydroxyacylglutathione hydrolase Thimo_0762 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain Thimo_0763 IPR033248 Transketolase, C-terminal domain Thimo_0763 IPR029061 Thiamin diphosphate-binding fold Thimo_0763 IPR005477 Deoxyxylulose-5-phosphate synthase Thimo_0763 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_0763 IPR020826 Transketolase binding site Thimo_0763 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0763 IPR005474 Transketolase, N-terminal Thimo_0764 IPR005119 LysR, substrate-binding Thimo_0764 IPR000847 Transcription regulator HTH, LysR Thimo_0764 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0764 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0765 IPR033966 RuBisCO Thimo_0765 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site Thimo_0765 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal Thimo_0765 IPR020888 Ribulose bisphosphate carboxylase large subunit, type I Thimo_0765 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal Thimo_0765 IPR036422 RuBisCO large subunit, N-terminal domain superfamily Thimo_0765 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily Thimo_0766 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily Thimo_0766 IPR000894 Ribulose bisphosphate carboxylase small chain, domain Thimo_0767 IPR000160 GGDEF domain Thimo_0767 IPR001789 Signal transduction response regulator, receiver domain Thimo_0767 IPR029787 Nucleotide cyclase Thimo_0767 IPR011006 CheY-like superfamily Thimo_0768 IPR029061 Thiamin diphosphate-binding fold Thimo_0768 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_0768 IPR033248 Transketolase, C-terminal domain Thimo_0768 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0774 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_0774 IPR001821 [NiFe]-hydrogenase, small subunit Thimo_0774 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_0774 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Thimo_0774 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_0774 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Thimo_0774 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_0777 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_0777 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Thimo_0777 IPR001501 Nickel-dependent hydrogenase, large subunit Thimo_0784 IPR022482 Proteasome ATPase Thimo_0784 IPR041626 Proteasomal ATPase, N-terminal OB domain Thimo_0784 IPR032501 Proteasomal ATPase OB C-terminal domain Thimo_0784 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0784 IPR003960 ATPase, AAA-type, conserved site Thimo_0784 IPR003959 ATPase, AAA-type, core Thimo_0784 IPR003593 AAA+ ATPase domain Thimo_0822 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0822 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0822 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0822 IPR005467 Histidine kinase domain Thimo_0822 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0822 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0822 IPR000014 PAS domain Thimo_0823 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0823 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0823 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0823 IPR009057 Homeobox-like domain superfamily Thimo_0823 IPR001789 Signal transduction response regulator, receiver domain Thimo_0823 IPR003593 AAA+ ATPase domain Thimo_0823 IPR011006 CheY-like superfamily Thimo_0823 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_0823 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0823 IPR002197 DNA binding HTH domain, Fis-type Thimo_0828 IPR005261 Conserved hypothetical protein CHP00659 Thimo_0828 IPR007300 CidB/LrgB family Thimo_0834 IPR011006 CheY-like superfamily Thimo_0834 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0834 IPR005467 Histidine kinase domain Thimo_0834 IPR001789 Signal transduction response regulator, receiver domain Thimo_0834 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_0834 IPR015387 LuxQ, periplasmic Thimo_0834 IPR029151 Periplasmic sensor-like domain superfamily Thimo_0834 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_0834 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_0834 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0836 IPR018375 Coproporphyrinogen III oxidase, conserved site Thimo_0836 IPR001260 Coproporphyrinogen III oxidase, aerobic Thimo_0836 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily Thimo_0840 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0840 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0840 IPR002852 Uncharacterised protein family UPF0251 Thimo_0841 IPR002744 MIP18 family-like Thimo_0841 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0841 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Thimo_0841 IPR034904 Fe-S cluster assembly domain superfamily Thimo_0841 IPR000808 Mrp, conserved site Thimo_0841 IPR019591 Mrp/NBP35 ATP-binding protein Thimo_0844 IPR007862 Adenylate kinase, active site lid domain Thimo_0844 IPR000850 Adenylate kinase/UMP-CMP kinase Thimo_0844 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0844 IPR006259 Adenylate kinase subfamily Thimo_0844 IPR033690 Adenylate kinase, conserved site Thimo_0845 IPR017937 Thioredoxin, conserved site Thimo_0845 IPR013766 Thioredoxin domain Thimo_0845 IPR036249 Thioredoxin-like superfamily Thimo_0845 IPR005746 Thioredoxin Thimo_0849 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_0849 IPR006143 RND efflux pump, membrane fusion protein Thimo_0850 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Thimo_0850 IPR001036 Acriflavin resistance protein Thimo_0850 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0851 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0851 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification Thimo_0851 IPR025835 Thiopurine S-methyltransferase Thimo_0851 IPR008854 TPMT family Thimo_0853 IPR001633 EAL domain Thimo_0853 IPR029787 Nucleotide cyclase Thimo_0853 IPR005330 MHYT domain Thimo_0853 IPR035919 EAL domain superfamily Thimo_0853 IPR000160 GGDEF domain Thimo_0854 IPR035919 EAL domain superfamily Thimo_0854 IPR000160 GGDEF domain Thimo_0854 IPR005330 MHYT domain Thimo_0854 IPR029787 Nucleotide cyclase Thimo_0854 IPR001633 EAL domain Thimo_0856 IPR038731 Glycosyltransferase RgtA/B/C/D-like Thimo_0857 IPR012549 Phosphoethanolamine transferase, N-terminal Thimo_0857 IPR040423 Phosphoethanolamine transferase Thimo_0857 IPR000917 Sulfatase, N-terminal Thimo_0857 IPR017850 Alkaline-phosphatase-like, core domain superfamily Thimo_0873 IPR000014 PAS domain Thimo_0873 IPR002645 STAS domain Thimo_0873 IPR001610 PAC motif Thimo_0873 IPR000700 PAS-associated, C-terminal Thimo_0873 IPR036513 STAS domain superfamily Thimo_0873 IPR035965 PAS domain superfamily Thimo_0876 IPR033755 PdxS/SNZ N-terminal domain Thimo_0876 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ Thimo_0876 IPR013785 Aldolase-type TIM barrel Thimo_0876 IPR011060 Ribulose-phosphate binding barrel Thimo_0877 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO Thimo_0877 IPR029062 Class I glutamine amidotransferase-like Thimo_0879 IPR029058 Alpha/Beta hydrolase fold Thimo_0879 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0879 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Thimo_0880 IPR031168 TrmE-type guanine nucleotide-binding domain Thimo_0880 IPR018948 GTP-binding protein TrmE, N-terminal Thimo_0880 IPR005225 Small GTP-binding protein domain Thimo_0880 IPR004520 tRNA modification GTPase MnmE Thimo_0880 IPR006073 GTP binding domain Thimo_0880 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0880 IPR027368 tRNA modification GTPase MnmE domain 2 Thimo_0880 IPR025867 MnmE, helical domain Thimo_0880 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 Thimo_0883 IPR042099 AMP-dependent synthetase-like superfamily Thimo_0883 IPR000873 AMP-dependent synthetase/ligase Thimo_0883 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_0883 IPR020845 AMP-binding, conserved site Thimo_0883 IPR010192 2-succinylbenzoate--CoA ligase Thimo_0884 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal Thimo_0884 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily Thimo_0884 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal Thimo_0884 IPR036422 RuBisCO large subunit, N-terminal domain superfamily Thimo_0884 IPR033966 RuBisCO Thimo_0885 IPR035917 YjbQ-like superfamily Thimo_0885 IPR001602 Uncharacterised protein family UPF0047 Thimo_0887 IPR000086 NUDIX hydrolase domain Thimo_0887 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_0887 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 Thimo_0894 IPR010927 Type IV conjugative transfer system protein TraH Thimo_0901 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_0901 IPR003593 AAA+ ATPase domain Thimo_0901 IPR003018 GAF domain Thimo_0901 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0901 IPR009057 Homeobox-like domain superfamily Thimo_0901 IPR002197 DNA binding HTH domain, Fis-type Thimo_0901 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0901 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0901 IPR010113 Nif-specific regulatory protein Thimo_0901 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0901 IPR029016 GAF-like domain superfamily Thimo_0914 IPR003607 HD/PDEase domain Thimo_0915 IPR010935 SMCs flexible hinge Thimo_0915 IPR024704 Structural maintenance of chromosomes protein Thimo_0915 IPR003395 RecF/RecN/SMC, N-terminal Thimo_0915 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0915 IPR036277 SMCs flexible hinge superfamily Thimo_0915 IPR011890 Structural maintenance of chromosomes protein, prokaryotic Thimo_0916 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily Thimo_0916 IPR011919 Cell division protein ZipA Thimo_0916 IPR007449 ZipA, C-terminal FtsZ-binding domain Thimo_0917 IPR018239 NAD-dependent DNA ligase, active site Thimo_0917 IPR033136 NAD-dependent DNA ligase, conserved site Thimo_0917 IPR013840 NAD-dependent DNA ligase, N-terminal Thimo_0917 IPR041663 DisA/LigA, helix-hairpin-helix motif Thimo_0917 IPR036420 BRCT domain superfamily Thimo_0917 IPR001357 BRCT domain Thimo_0917 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Thimo_0917 IPR004150 NAD-dependent DNA ligase, OB-fold Thimo_0917 IPR001679 NAD-dependent DNA ligase Thimo_0917 IPR010994 RuvA domain 2-like Thimo_0917 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type Thimo_0917 IPR012340 Nucleic acid-binding, OB-fold Thimo_0917 IPR013839 NAD-dependent DNA ligase, adenylation Thimo_0919 IPR041891 Carbonic anhydrase, prokaryotic-like Thimo_0919 IPR023561 Carbonic anhydrase, alpha-class Thimo_0919 IPR036398 Alpha carbonic anhydrase domain superfamily Thimo_0919 IPR001148 Alpha carbonic anhydrase domain Thimo_0919 IPR018338 Carbonic anhydrase, alpha-class, conserved site Thimo_0920 IPR014756 Immunoglobulin E-set Thimo_0920 IPR013783 Immunoglobulin-like fold Thimo_0920 IPR017853 Glycoside hydrolase superfamily Thimo_0920 IPR011837 Glycogen debranching enzyme, GlgX type Thimo_0920 IPR013780 Glycosyl hydrolase, all-beta Thimo_0920 IPR004193 Glycoside hydrolase, family 13, N-terminal Thimo_0920 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_0921 IPR006372 Bacteriochlorophyll/chlorophyll synthetase Thimo_0921 IPR000537 UbiA prenyltransferase family Thimo_0922 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0922 IPR011777 Geranylgeranyl reductase family Thimo_0922 IPR010253 Geranylgeranyl reductase, plant/prokaryotic Thimo_0923 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_0923 IPR005856 Cysteine synthase Thimo_0923 IPR005859 Cysteine synthase CysK Thimo_0923 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Thimo_0923 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_0927 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain Thimo_0927 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0927 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0927 IPR000847 Transcription regulator HTH, LysR Thimo_0927 IPR005119 LysR, substrate-binding Thimo_0928 IPR003439 ABC transporter-like Thimo_0928 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0928 IPR003593 AAA+ ATPase domain Thimo_0928 IPR017871 ABC transporter, conserved site Thimo_0931 IPR002751 Metal transport protein CbiM/NikMN Thimo_0934 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal Thimo_0934 IPR001095 Acetyl-CoA carboxylase, alpha subunit Thimo_0934 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0935 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0935 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal Thimo_0935 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Thimo_0935 IPR012094 tRNA(Ile)-lysidine synthase Thimo_0935 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal Thimo_0935 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain Thimo_0937 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0937 IPR003333 Mycolic acid cyclopropane synthase Thimo_0942 IPR035906 MetI-like superfamily Thimo_0942 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_0943 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_0943 IPR035906 MetI-like superfamily Thimo_0944 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit Thimo_0944 IPR013611 Transport-associated OB, type 2 Thimo_0944 IPR017871 ABC transporter, conserved site Thimo_0944 IPR003439 ABC transporter-like Thimo_0944 IPR003593 AAA+ ATPase domain Thimo_0944 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0944 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0945 IPR006059 Bacterial extracellular solute-binding protein Thimo_0945 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein Thimo_0946 IPR008276 Concentrative nucleoside transporter Thimo_0946 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial Thimo_0946 IPR011657 Concentrative nucleoside transporter C-terminal domain Thimo_0946 IPR002668 Concentrative nucleoside transporter N-terminal domain Thimo_0946 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Thimo_0947 IPR000397 Heat shock protein Hsp33 Thimo_0947 IPR016154 Heat shock protein Hsp33, C-terminal Thimo_0947 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily Thimo_0947 IPR016153 Heat shock protein Hsp33, N-terminal Thimo_0948 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily Thimo_0948 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE Thimo_0951 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_0951 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0951 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0953 IPR035919 EAL domain superfamily Thimo_0953 IPR000160 GGDEF domain Thimo_0953 IPR001633 EAL domain Thimo_0953 IPR029787 Nucleotide cyclase Thimo_0953 IPR005330 MHYT domain Thimo_0954 IPR013474 Circadian clock protein KaiB Thimo_0954 IPR011649 KaiB domain Thimo_0954 IPR039022 Circadian clock protein KaiB-like Thimo_0954 IPR036249 Thioredoxin-like superfamily Thimo_0955 IPR014774 KaiC-like domain Thimo_0955 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0955 IPR030665 Circadian clock protein kinase KaiC Thimo_0955 IPR010624 KaiC domain Thimo_0955 IPR003593 AAA+ ATPase domain Thimo_0956 IPR001753 Enoyl-CoA hydratase/isomerase Thimo_0956 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site Thimo_0956 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0956 IPR014748 Enoyl-CoA hydratase, C-terminal Thimo_0958 IPR019591 Mrp/NBP35 ATP-binding protein Thimo_0958 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Thimo_0958 IPR000808 Mrp, conserved site Thimo_0958 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0959 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0959 IPR002547 tRNA-binding domain Thimo_0959 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Thimo_0959 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_0959 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain Thimo_0959 IPR033911 Methioninyl-tRNA synthetase core domain Thimo_0959 IPR015413 Methionyl/Leucyl tRNA synthetase Thimo_0959 IPR029038 Methionyl-tRNA synthetase, Zn-domain Thimo_0959 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal Thimo_0959 IPR023458 Methionine-tRNA ligase, type 1 Thimo_0959 IPR014758 Methionyl-tRNA synthetase Thimo_0959 IPR012340 Nucleic acid-binding, OB-fold Thimo_0960 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA Thimo_0960 IPR003667 NqrDE/RnfAE Thimo_0961 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria Thimo_0961 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB Thimo_0961 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0961 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0961 IPR007202 4Fe-4S domain Thimo_0962 IPR026902 RnfC Barrel sandwich hybrid domain Thimo_0962 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0962 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0962 IPR009051 Alpha-helical ferredoxin Thimo_0962 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC Thimo_0962 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Thimo_0962 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Thimo_0962 IPR019554 Soluble ligand binding domain Thimo_0963 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD Thimo_0963 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D Thimo_0964 IPR007329 FMN-binding Thimo_0964 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG Thimo_0965 IPR010968 Ion-translocating oxidoreductase complex subunit E Thimo_0965 IPR003667 NqrDE/RnfAE Thimo_0967 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Thimo_0967 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Thimo_0968 IPR011008 Dimeric alpha-beta barrel Thimo_0968 IPR005545 YCII-related Thimo_0969 IPR006008 Intracellular septation protein A Thimo_0970 IPR004013 PHP domain Thimo_0970 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_0970 IPR016195 Polymerase/histidinol phosphatase-like Thimo_0971 IPR006070 YrdC-like domain Thimo_0971 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_0972 IPR008915 Peptidase M50 Thimo_0973 IPR002306 Tryptophan-tRNA ligase Thimo_0973 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0973 IPR002305 Aminoacyl-tRNA synthetase, class Ic Thimo_0973 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_0974 IPR003768 Segregation and condensation protein A Thimo_0975 IPR005234 Chromosome segregation/condensation protein ScpB Thimo_0975 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0975 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0976 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0976 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Thimo_0976 IPR014710 RmlC-like jelly roll fold Thimo_0976 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal Thimo_0976 IPR011051 RmlC-like cupin domain superfamily Thimo_0976 IPR005835 Nucleotidyl transferase domain Thimo_0977 IPR016066 Alpha-D-phosphohexomutase, conserved site Thimo_0977 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Thimo_0977 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Thimo_0977 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Thimo_0977 IPR005841 Alpha-D-phosphohexomutase superfamily Thimo_0977 IPR005843 Alpha-D-phosphohexomutase, C-terminal Thimo_0977 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Thimo_0977 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Thimo_0992 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0992 IPR017932 Glutamine amidotransferase type 2 domain Thimo_0992 IPR006426 Asparagine synthase, glutamine-hydrolyzing Thimo_0992 IPR033738 Asparagine synthase, N-terminal domain Thimo_0992 IPR001962 Asparagine synthase Thimo_1004 IPR001296 Glycosyl transferase, family 1 Thimo_1004 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1004 IPR017814 Mycothiol biosynthesis protein, MshA Thimo_1005 IPR019734 Tetratricopeptide repeat Thimo_1005 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_1005 IPR013026 Tetratricopeptide repeat-containing domain Thimo_1005 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1006 IPR001173 Glycosyltransferase 2-like Thimo_1006 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1007 IPR010233 Ubiquinone biosynthesis O-methyltransferase Thimo_1007 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1012 IPR025948 HTH-like domain Thimo_1012 IPR001584 Integrase, catalytic core Thimo_1012 IPR036397 Ribonuclease H superfamily Thimo_1012 IPR012337 Ribonuclease H-like superfamily Thimo_1013 IPR000683 Oxidoreductase, N-terminal Thimo_1013 IPR004104 Oxidoreductase, C-terminal Thimo_1013 IPR036291 NAD(P)-binding domain superfamily Thimo_1019 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like Thimo_1019 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Thimo_1028 IPR002514 Transposase IS3/IS911family Thimo_1028 IPR009057 Homeobox-like domain superfamily Thimo_1028 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1029 IPR012337 Ribonuclease H-like superfamily Thimo_1029 IPR025948 HTH-like domain Thimo_1029 IPR001584 Integrase, catalytic core Thimo_1029 IPR036397 Ribonuclease H superfamily Thimo_1032 IPR016092 FeS cluster insertion protein Thimo_1032 IPR023063 FeS cluster insertion protein ErpA Thimo_1032 IPR017870 FeS cluster insertion, C-terminal, conserved site Thimo_1032 IPR000361 FeS cluster biogenesis Thimo_1032 IPR035903 HesB-like domain superfamily Thimo_1034 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 Thimo_1034 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_1034 IPR002305 Aminoacyl-tRNA synthetase, class Ic Thimo_1034 IPR002307 Tyrosine-tRNA ligase Thimo_1034 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1034 IPR002942 RNA-binding S4 domain Thimo_1034 IPR024088 Tyrosine-tRNA ligase, bacterial-type Thimo_1034 IPR036986 RNA-binding S4 domain superfamily Thimo_1040 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC Thimo_1040 IPR016195 Polymerase/histidinol phosphatase-like Thimo_1041 IPR023753 FAD/NAD(P)-binding domain Thimo_1041 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Thimo_1041 IPR006322 Glutathione reductase, eukaryote/bacterial Thimo_1041 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Thimo_1041 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Thimo_1041 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1041 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_1042 IPR036249 Thioredoxin-like superfamily Thimo_1042 IPR002109 Glutaredoxin Thimo_1042 IPR013740 Redoxin Thimo_1042 IPR011767 Glutaredoxin active site Thimo_1042 IPR037944 Peroxiredoxin-5-like Thimo_1042 IPR013766 Thioredoxin domain Thimo_1043 IPR031304 Transglycosylase SLT domain 2 Thimo_1043 IPR023346 Lysozyme-like domain superfamily Thimo_1043 IPR011757 Lytic transglycosylase MltB Thimo_1044 IPR001650 Helicase, C-terminal Thimo_1044 IPR012340 Nucleic acid-binding, OB-fold Thimo_1044 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1044 IPR011545 DEAD/DEAH box helicase domain Thimo_1044 IPR033454 RecG, wedge domain Thimo_1044 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1044 IPR004609 ATP-dependent DNA helicase RecG Thimo_1045 IPR006370 4-hydroxybenzoate polyprenyltransferase-like Thimo_1045 IPR039653 Prenyltransferase Thimo_1045 IPR030470 UbiA prenyltransferase conserved site Thimo_1045 IPR000537 UbiA prenyltransferase family Thimo_1047 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1047 IPR001977 Dephospho-CoA kinase Thimo_1048 IPR014032 Peptidase A24A, prepilin type IV, bacterial Thimo_1048 IPR000045 Prepilin type IV endopeptidase, peptidase domain Thimo_1048 IPR010627 Peptidase A24A, N-terminal Thimo_1049 IPR042094 Type II secretion system F domain superfamily Thimo_1049 IPR018076 Type II secretion system F domain Thimo_1049 IPR001992 Type II secretion system conserved site Thimo_1049 IPR003004 GspF/PilC family Thimo_1050 IPR013374 ATPase, type IV, pilus assembly, PilB Thimo_1050 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1050 IPR001482 Type II/IV secretion system protein Thimo_1050 IPR037257 General secretory system II, protein E, N-terminal superfamily Thimo_1050 IPR007831 General secretory system II, protein E, N-terminal Thimo_1050 IPR042181 Type II secretion system, protein E, N-terminal Thimo_1052 IPR011904 Acetate-CoA ligase Thimo_1052 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain Thimo_1052 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_1052 IPR020845 AMP-binding, conserved site Thimo_1052 IPR000873 AMP-dependent synthetase/ligase Thimo_1052 IPR042099 AMP-dependent synthetase-like superfamily Thimo_1053 IPR008928 Six-hairpin glycosidase superfamily Thimo_1053 IPR004879 Domain of unknown function DUF255 Thimo_1053 IPR012341 Six-hairpin glycosidase-like superfamily Thimo_1053 IPR036249 Thioredoxin-like superfamily Thimo_1053 IPR024705 Spermatogenesis-associated protein 20 Thimo_1054 IPR011076 Malate synthase-like superfamily Thimo_1054 IPR001465 Malate synthase Thimo_1054 IPR023310 Malate synthase G, beta sub-domain Thimo_1054 IPR006253 Malate synthase G Thimo_1057 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA Thimo_1057 IPR042118 QueA, domain 1 Thimo_1057 IPR042119 QueA, domain 2 Thimo_1057 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily Thimo_1058 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily Thimo_1058 IPR002569 Peptide methionine sulphoxide reductase MsrA Thimo_1060 IPR004803 tRNA-guanine transglycosylase Thimo_1060 IPR036511 Queuine tRNA-ribosyltransferase-like Thimo_1060 IPR002616 tRNA-guanine(15) transglycosylase-like Thimo_1061 IPR003849 Preprotein translocase YajC Thimo_1062 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Thimo_1062 IPR001036 Acriflavin resistance protein Thimo_1062 IPR005791 Protein translocase subunit SecD Thimo_1062 IPR027398 SecD export protein N-terminal TM domain Thimo_1062 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1062 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Thimo_1063 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Thimo_1063 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1063 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Thimo_1063 IPR005665 Protein-export membrane protein SecF, bacterial Thimo_1064 IPR020550 Inositol monophosphatase, conserved site Thimo_1064 IPR020583 Inositol monophosphatase, metal-binding site Thimo_1064 IPR000760 Inositol monophosphatase-like Thimo_1064 IPR022337 Inositol monophosphatase, SuhB Thimo_1064 IPR033942 Inositol monophosphatase Thimo_1065 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_1065 IPR001537 tRNA/rRNA methyltransferase, SpoU type Thimo_1065 IPR029028 Alpha/beta knot methyltransferases Thimo_1065 IPR004384 RNA methyltransferase TrmJ/LasT Thimo_1066 IPR001451 Hexapeptide repeat Thimo_1066 IPR042122 Serine acetyltransferase, N-terminal domain superfamily Thimo_1066 IPR011004 Trimeric LpxA-like superfamily Thimo_1066 IPR005881 Serine O-acetyltransferase Thimo_1066 IPR018357 Hexapeptide transferase, conserved site Thimo_1068 IPR006700 Ribosomal RNA small subunit methyltransferase E Thimo_1068 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_1068 IPR029028 Alpha/beta knot methyltransferases Thimo_1068 IPR015947 PUA-like superfamily Thimo_1069 IPR006696 Protein of unknown function DUF423 Thimo_1071 IPR020557 Fumarate lyase, conserved site Thimo_1071 IPR008948 L-Aspartase-like Thimo_1071 IPR029419 Argininosuccinate lyase, C-terminal Thimo_1071 IPR009049 Argininosuccinate lyase Thimo_1071 IPR000362 Fumarate lyase family Thimo_1071 IPR022761 Fumarate lyase, N-terminal Thimo_1075 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C Thimo_1075 IPR012338 Beta-lactamase/transpeptidase-like Thimo_1076 IPR011782 Peptidase S1C, Do Thimo_1076 IPR001940 Peptidase S1C Thimo_1076 IPR036034 PDZ superfamily Thimo_1076 IPR001478 PDZ domain Thimo_1076 IPR009003 Peptidase S1, PA clan Thimo_1077 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Thimo_1078 IPR012259 Dihydrofolate reductase Thimo_1078 IPR024072 Dihydrofolate reductase-like domain superfamily Thimo_1078 IPR017925 Dihydrofolate reductase conserved site Thimo_1078 IPR001796 Dihydrofolate reductase domain Thimo_1079 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Thimo_1080 IPR004821 Cytidyltransferase-like domain Thimo_1080 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase Thimo_1080 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1081 IPR012134 Glutamate-5-semialdehyde dehydrogenase Thimo_1081 IPR016161 Aldehyde/histidinol dehydrogenase Thimo_1081 IPR000965 GPR domain Thimo_1081 IPR016162 Aldehyde dehydrogenase, N-terminal Thimo_1081 IPR016163 Aldehyde dehydrogenase, C-terminal Thimo_1081 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site Thimo_1081 IPR015590 Aldehyde dehydrogenase domain Thimo_1083 IPR007485 LPS-assembly lipoprotein LptE Thimo_1084 IPR025709 Leucyl-tRNA synthetase, editing domain Thimo_1084 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Thimo_1084 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1084 IPR002302 Leucine-tRNA ligase Thimo_1084 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Thimo_1084 IPR002300 Aminoacyl-tRNA synthetase, class Ia Thimo_1084 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_1084 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Thimo_1085 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Thimo_1085 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_1085 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Thimo_1085 IPR006258 Dihydrolipoamide dehydrogenase Thimo_1085 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Thimo_1085 IPR023753 FAD/NAD(P)-binding domain Thimo_1085 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1086 IPR036625 E3-binding domain superfamily Thimo_1086 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Thimo_1086 IPR004167 Peripheral subunit-binding domain Thimo_1086 IPR011053 Single hybrid motif Thimo_1086 IPR000089 Biotin/lipoyl attachment Thimo_1086 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex Thimo_1086 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain Thimo_1086 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Thimo_1087 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_1087 IPR029061 Thiamin diphosphate-binding fold Thimo_1087 IPR041621 Pyruvate dehydrogenase E1 component, middle domain Thimo_1087 IPR004660 Pyruvate dehydrogenase E1 component Thimo_1087 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal Thimo_1087 IPR005474 Transketolase, N-terminal Thimo_1095 IPR036748 MTH938-like superfamily Thimo_1095 IPR007523 NDUFAF3/Mth938 domain-containing protein Thimo_1096 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1096 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1096 IPR004839 Aminotransferase, class I/classII Thimo_1096 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1097 IPR002912 ACT domain Thimo_1097 IPR036291 NAD(P)-binding domain superfamily Thimo_1097 IPR019811 Homoserine dehydrogenase, conserved site Thimo_1097 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding Thimo_1097 IPR016204 Homoserine dehydrogenase Thimo_1097 IPR001342 Homoserine dehydrogenase, catalytic Thimo_1099 IPR029058 Alpha/Beta hydrolase fold Thimo_1099 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1099 IPR012020 AB hydrolase 4 family Thimo_1099 IPR000952 AB hydrolase 4, conserved site Thimo_1100 IPR003423 Outer membrane efflux protein Thimo_1100 IPR010130 Type I secretion outer membrane protein, TolC Thimo_1101 IPR020541 Chorismate synthase, conserved site Thimo_1101 IPR035904 Chorismate synthase AroC superfamily Thimo_1101 IPR000453 Chorismate synthase Thimo_1102 IPR020846 Major facilitator superfamily domain Thimo_1102 IPR024989 Major facilitator superfamily associated domain Thimo_1102 IPR036259 MFS transporter superfamily Thimo_1103 IPR014756 Immunoglobulin E-set Thimo_1103 IPR013783 Immunoglobulin-like fold Thimo_1103 IPR017853 Glycoside hydrolase superfamily Thimo_1103 IPR013780 Glycosyl hydrolase, all-beta Thimo_1103 IPR011837 Glycogen debranching enzyme, GlgX type Thimo_1103 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_1103 IPR004193 Glycoside hydrolase, family 13, N-terminal Thimo_1106 IPR003593 AAA+ ATPase domain Thimo_1106 IPR003439 ABC transporter-like Thimo_1106 IPR017871 ABC transporter, conserved site Thimo_1106 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl Thimo_1106 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1107 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Thimo_1107 IPR030802 ABC transporter permease MalE Thimo_1108 IPR007730 Sporulation-like domain Thimo_1108 IPR012997 Rare lipoprotein A Thimo_1108 IPR036908 RlpA-like domain superfamily Thimo_1108 IPR009009 RlpA-like protein, double-psi beta-barrel domain Thimo_1108 IPR034718 Endolytic peptidoglycan transglycosylase RlpA Thimo_1108 IPR036680 Sporulation-like domain superfamily Thimo_1110 IPR001952 Alkaline phosphatase Thimo_1110 IPR017850 Alkaline-phosphatase-like, core domain superfamily Thimo_1110 IPR018299 Alkaline phosphatase, active site Thimo_1111 IPR029058 Alpha/Beta hydrolase fold Thimo_1111 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1114 IPR024163 Aerotolerance regulator, N-terminal Thimo_1114 IPR022933 Uncharacterised protein family UPF0353 Thimo_1114 IPR002035 von Willebrand factor, type A Thimo_1114 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1115 IPR002035 von Willebrand factor, type A Thimo_1115 IPR033881 von Willebrand factor domain BatA-type Thimo_1115 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1117 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1117 IPR002881 Domain of unknown function DUF58 Thimo_1118 IPR041628 ChlI/MoxR, AAA lid domain Thimo_1118 IPR011703 ATPase, AAA-3 Thimo_1118 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1125 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Thimo_1125 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Thimo_1128 IPR006638 Elp3/MiaB/NifB Thimo_1128 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_1128 IPR039661 ELP3/YhcC Thimo_1128 IPR032432 Radical SAM, C-terminal extension Thimo_1128 IPR007197 Radical SAM Thimo_1128 IPR005911 Protein YhcC-like Thimo_1129 IPR029058 Alpha/Beta hydrolase fold Thimo_1129 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1129 IPR000639 Epoxide hydrolase-like Thimo_1131 IPR027354 YcgL domain Thimo_1131 IPR006379 HAD-superfamily hydrolase, subfamily IIB Thimo_1131 IPR006380 Sucrose-phosphatase-like, N-terminal Thimo_1131 IPR038068 YcgL-like superfamily Thimo_1131 IPR036412 HAD-like superfamily Thimo_1131 IPR023214 HAD superfamily Thimo_1132 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain Thimo_1132 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site Thimo_1132 IPR029000 Cyclophilin-like domain superfamily Thimo_1132 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase Thimo_1135 IPR000847 Transcription regulator HTH, LysR Thimo_1135 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1135 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1135 IPR005119 LysR, substrate-binding Thimo_1137 IPR013651 ATP-grasp fold, RimK-type Thimo_1137 IPR011761 ATP-grasp fold Thimo_1137 IPR013815 ATP-grasp fold, subdomain 1 Thimo_1137 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Thimo_1137 IPR041107 RimK, PreATP-grasp domain Thimo_1137 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX Thimo_1138 IPR001872 Peptidase A8, signal peptidase II Thimo_1139 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Thimo_1139 IPR002300 Aminoacyl-tRNA synthetase, class Ia Thimo_1139 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_1139 IPR023585 Isoleucine-tRNA ligase, type 1 Thimo_1139 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Thimo_1139 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1139 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Thimo_1139 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain Thimo_1139 IPR002301 Isoleucine-tRNA ligase Thimo_1139 IPR010663 Zinc finger, FPG/IleRS-type Thimo_1140 IPR015864 FAD synthetase Thimo_1140 IPR023468 Riboflavin kinase Thimo_1140 IPR002606 Riboflavin kinase, bacterial Thimo_1140 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic Thimo_1140 IPR023465 Riboflavin kinase domain superfamily Thimo_1140 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1141 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1142 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1142 IPR001296 Glycosyl transferase, family 1 Thimo_1143 IPR013656 PAS fold-4 Thimo_1143 IPR035965 PAS domain superfamily Thimo_1143 IPR000014 PAS domain Thimo_1143 IPR029787 Nucleotide cyclase Thimo_1143 IPR035919 EAL domain superfamily Thimo_1143 IPR001633 EAL domain Thimo_1143 IPR000160 GGDEF domain Thimo_1150 IPR031312 Sodium/sulphate symporter, conserved site Thimo_1150 IPR004680 Citrate transporter-like domain Thimo_1150 IPR006037 Regulator of K+ conductance, C-terminal Thimo_1150 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Thimo_1151 IPR013830 SGNH hydrolase-type esterase domain Thimo_1151 IPR036514 SGNH hydrolase superfamily Thimo_1152 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS Thimo_1152 IPR024370 PBP domain Thimo_1153 IPR011864 Phosphate ABC transporter, permease protein PstC Thimo_1153 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_1153 IPR035906 MetI-like superfamily Thimo_1154 IPR005672 Phosphate transport system permease protein PstA Thimo_1154 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_1154 IPR035906 MetI-like superfamily Thimo_1155 IPR005670 Phosphate transport system permease protein 1 Thimo_1155 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1155 IPR015850 ABC transporter, phosphate import, PstB Thimo_1155 IPR003593 AAA+ ATPase domain Thimo_1155 IPR017871 ABC transporter, conserved site Thimo_1155 IPR003439 ABC transporter-like Thimo_1156 IPR024370 PBP domain Thimo_1156 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS Thimo_1158 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB Thimo_1158 IPR004488 Magnesium/cobalt transport protein CorA Thimo_1159 IPR011703 ATPase, AAA-3 Thimo_1159 IPR041628 ChlI/MoxR, AAA lid domain Thimo_1159 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1160 IPR020595 MnmG-related, conserved site Thimo_1160 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Thimo_1160 IPR026904 GidA associated domain 3 Thimo_1160 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1160 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related Thimo_1161 IPR003682 rRNA small subunit methyltransferase G Thimo_1161 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1162 IPR025669 AAA domain Thimo_1162 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1163 IPR004437 ParB/RepB/Spo0J partition protein Thimo_1163 IPR003115 ParB/Sulfiredoxin Thimo_1163 IPR036086 ParB/Sulfiredoxin superfamily Thimo_1163 IPR041468 ParB/Spo0J, HTH domain Thimo_1165 IPR000568 ATP synthase, F0 complex, subunit A Thimo_1165 IPR023011 ATP synthase, F0 complex, subunit A, active site Thimo_1165 IPR035908 ATP synthase, F0 complex, subunit A superfamily Thimo_1166 IPR038662 F1F0 ATP synthase subunit C superfamily Thimo_1166 IPR002379 V-ATPase proteolipid subunit C-like domain Thimo_1166 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Thimo_1166 IPR000454 ATP synthase, F0 complex, subunit C Thimo_1166 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast Thimo_1166 IPR035921 F/V-ATP synthase subunit C superfamily Thimo_1167 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily Thimo_1167 IPR005864 ATP synthase, F0 complex, subunit b, bacterial Thimo_1167 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast Thimo_1168 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Thimo_1168 IPR020781 ATPase, OSCP/delta subunit, conserved site Thimo_1168 IPR000711 ATPase, OSCP/delta subunit Thimo_1169 IPR000793 ATP synthase, alpha subunit, C-terminal Thimo_1169 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily Thimo_1169 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain Thimo_1169 IPR005294 ATP synthase, F1 complex, alpha subunit Thimo_1169 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Thimo_1169 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Thimo_1169 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily Thimo_1169 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1169 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_1169 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily Thimo_1170 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily Thimo_1170 IPR000131 ATP synthase, F1 complex, gamma subunit Thimo_1170 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Thimo_1171 IPR003593 AAA+ ATPase domain Thimo_1171 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Thimo_1171 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1171 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Thimo_1171 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily Thimo_1171 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_1171 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal Thimo_1171 IPR005722 ATP synthase, F1 complex, beta subunit Thimo_1172 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Thimo_1172 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit Thimo_1172 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Thimo_1172 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal Thimo_1172 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Thimo_1173 IPR011004 Trimeric LpxA-like superfamily Thimo_1173 IPR025877 MobA-like NTP transferase Thimo_1173 IPR001451 Hexapeptide repeat Thimo_1173 IPR038009 GlmU, C-terminal LbH domain Thimo_1173 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase Thimo_1173 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1174 IPR035466 GlmS/AgaS, SIS domain 1 Thimo_1174 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising Thimo_1174 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_1174 IPR017932 Glutamine amidotransferase type 2 domain Thimo_1174 IPR001347 Sugar isomerase (SIS) Thimo_1174 IPR035490 GlmS/FrlB, SIS domain 2 Thimo_1175 IPR017926 Glutamine amidotransferase Thimo_1175 IPR029062 Class I glutamine amidotransferase-like Thimo_1175 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain Thimo_1176 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Thimo_1176 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Thimo_1176 IPR017459 Glycosyl transferase family 3, N-terminal domain Thimo_1176 IPR000312 Glycosyl transferase, family 3 Thimo_1176 IPR005940 Anthranilate phosphoribosyl transferase Thimo_1177 IPR013785 Aldolase-type TIM barrel Thimo_1177 IPR013798 Indole-3-glycerol phosphate synthase Thimo_1177 IPR001468 Indole-3-glycerol phosphate synthase, conserved site Thimo_1177 IPR011060 Ribulose-phosphate binding barrel Thimo_1178 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1178 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1178 IPR018490 Cyclic nucleotide-binding-like Thimo_1178 IPR018335 Transcription regulator HTH, Crp-type, conserved site Thimo_1178 IPR014710 RmlC-like jelly roll fold Thimo_1178 IPR018488 Cyclic nucleotide-binding, conserved site Thimo_1178 IPR000595 Cyclic nucleotide-binding domain Thimo_1178 IPR012318 Crp-type HTH domain Thimo_1180 IPR016067 S-adenosylmethionine decarboxylase, core Thimo_1180 IPR009165 S-adenosylmethionine decarboxylase, bacterial Thimo_1180 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic Thimo_1181 IPR009078 Ferritin-like superfamily Thimo_1181 IPR011566 Ubiquinone biosynthesis protein Coq7 Thimo_1182 IPR004017 Cysteine-rich domain Thimo_1182 IPR009051 Alpha-helical ferredoxin Thimo_1182 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1182 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1182 IPR012257 Glycolate oxidase, iron-sulphur subunit Thimo_1183 IPR005822 Ribosomal protein L13 Thimo_1183 IPR023563 Ribosomal protein L13, conserved site Thimo_1183 IPR005823 Ribosomal protein L13, bacterial-type Thimo_1183 IPR036899 Ribosomal protein L13 superfamily Thimo_1184 IPR000754 Ribosomal protein S9 Thimo_1184 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1184 IPR020574 Ribosomal protein S9, conserved site Thimo_1184 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1184 IPR023035 Ribosomal protein S9, bacterial/plastid Thimo_1186 IPR013793 Porin, Gram-negative type, conserved site Thimo_1186 IPR001702 Porin, Gram-negative type Thimo_1186 IPR002299 Porin, Neisseria sp. type Thimo_1186 IPR023614 Porin domain superfamily Thimo_1186 IPR033900 Porin domain, Gram-negative type Thimo_1187 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup Thimo_1187 IPR037171 NagB/RpiA transferase-like Thimo_1187 IPR004788 Ribose 5-phosphate isomerase, type A Thimo_1188 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_1188 IPR038110 Threonine dehydratase, ACT-like domain superfamily Thimo_1188 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_1188 IPR005787 Threonine dehydratase, biosynthetic Thimo_1188 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Thimo_1188 IPR001721 Threonine dehydratase, ACT-like domain Thimo_1190 IPR002698 5-formyltetrahydrofolate cyclo-ligase Thimo_1190 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Thimo_1190 IPR037171 NagB/RpiA transferase-like Thimo_1192 IPR007838 Cell division protein ZapA-like Thimo_1192 IPR036192 Cell division protein ZapA-like superfamily Thimo_1194 IPR036255 YgfB-like superfamily Thimo_1194 IPR011978 Uncharacterised protein family UPF0149 Thimo_1195 IPR000994 Peptidase M24 Thimo_1195 IPR007865 Aminopeptidase P, N-terminal Thimo_1195 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Thimo_1195 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Thimo_1195 IPR001714 Peptidase M24, methionine aminopeptidase Thimo_1195 IPR036005 Creatinase/aminopeptidase-like Thimo_1196 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1196 IPR002938 FAD-binding domain Thimo_1196 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Thimo_1196 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase Thimo_1196 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site Thimo_1197 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Thimo_1197 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site Thimo_1197 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1197 IPR002938 FAD-binding domain Thimo_1198 IPR035966 Phosphofructokinase superfamily Thimo_1198 IPR022953 ATP-dependent 6-phosphofructokinase Thimo_1198 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 Thimo_1198 IPR000023 Phosphofructokinase domain Thimo_1199 IPR004131 Pyrophosphate-energised proton pump Thimo_1200 IPR036649 Inorganic pyrophosphatase superfamily Thimo_1200 IPR008162 Inorganic pyrophosphatase Thimo_1201 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain Thimo_1201 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily Thimo_1201 IPR023045 Molybdenum cofactor biosynthesis C Thimo_1203 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1203 IPR006073 GTP binding domain Thimo_1203 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC Thimo_1203 IPR030393 EngB-type guanine nucleotide-binding (G) domain Thimo_1205 IPR002891 Adenylyl-sulfate kinase Thimo_1205 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1206 IPR011004 Trimeric LpxA-like superfamily Thimo_1206 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily Thimo_1206 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family Thimo_1206 IPR001451 Hexapeptide repeat Thimo_1206 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 Thimo_1206 IPR018357 Hexapeptide transferase, conserved site Thimo_1207 IPR004839 Aminotransferase, class I/classII Thimo_1207 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1207 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1207 IPR019942 LL-diaminopimelate aminotransferase/aminotransferase ALD1 Thimo_1207 IPR019881 Diaminopimelate aminotransferase, DapL, Desulfovibrio-type Thimo_1207 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1211 IPR006218 DAHP synthetase I/KDSA Thimo_1211 IPR006219 DHAP synthase, class 1 Thimo_1211 IPR013785 Aldolase-type TIM barrel Thimo_1213 IPR000788 Ribonucleotide reductase large subunit, C-terminal Thimo_1213 IPR013509 Ribonucleotide reductase large subunit, N-terminal Thimo_1213 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Thimo_1213 IPR039718 Ribonucleoside-diphosphate reductase large subunit Thimo_1213 IPR013346 Ribonucleotide reductase, class I , alpha subunit Thimo_1213 IPR005144 ATP-cone domain Thimo_1216 IPR011146 HIT-like domain Thimo_1216 IPR036265 HIT-like superfamily Thimo_1216 IPR019808 Histidine triad, conserved site Thimo_1216 IPR001310 Histidine triad (HIT) protein Thimo_1217 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Thimo_1219 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Thimo_1219 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1219 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Thimo_1219 IPR011803 Adenylylsulphate reductase, alpha subunit Thimo_1219 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Thimo_1220 IPR011802 Adenylylsulphate reductase, beta subunit Thimo_1220 IPR022738 Adenylylsulphate reductase, beta subunit, C-terminal Thimo_1220 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1220 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1220 IPR038465 APS reductase, beta subunit, C-terminal domain superfamily Thimo_1223 IPR013785 Aldolase-type TIM barrel Thimo_1223 IPR000891 Pyruvate carboxyltransferase Thimo_1223 IPR035685 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Thimo_1223 IPR017629 4-hydroxy-2-oxovalerate aldolase Thimo_1223 IPR012425 DmpG-like communication Thimo_1226 IPR015590 Aldehyde dehydrogenase domain Thimo_1226 IPR016162 Aldehyde dehydrogenase, N-terminal Thimo_1226 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Thimo_1226 IPR016160 Aldehyde dehydrogenase, cysteine active site Thimo_1226 IPR016163 Aldehyde dehydrogenase, C-terminal Thimo_1226 IPR016161 Aldehyde/histidinol dehydrogenase Thimo_1227 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase Thimo_1227 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type Thimo_1227 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1227 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Thimo_1228 IPR001036 Acriflavin resistance protein Thimo_1228 IPR023931 Multidrug resistance protein MdtC Thimo_1228 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1231 IPR000160 GGDEF domain Thimo_1231 IPR035919 EAL domain superfamily Thimo_1231 IPR029787 Nucleotide cyclase Thimo_1231 IPR005330 MHYT domain Thimo_1231 IPR001633 EAL domain Thimo_1234 IPR015590 Aldehyde dehydrogenase domain Thimo_1234 IPR016162 Aldehyde dehydrogenase, N-terminal Thimo_1234 IPR016161 Aldehyde/histidinol dehydrogenase Thimo_1234 IPR016163 Aldehyde dehydrogenase, C-terminal Thimo_1235 IPR022761 Fumarate lyase, N-terminal Thimo_1235 IPR008948 L-Aspartase-like Thimo_1235 IPR020557 Fumarate lyase, conserved site Thimo_1235 IPR000362 Fumarate lyase family Thimo_1235 IPR024083 Fumarase/histidase, N-terminal Thimo_1235 IPR018951 Fumarase C, C-terminal Thimo_1235 IPR005677 Fumarate hydratase, class II Thimo_1240 IPR003445 Cation transporter Thimo_1240 IPR004772 TrkH potassium transport family Thimo_1241 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Thimo_1241 IPR036291 NAD(P)-binding domain superfamily Thimo_1241 IPR003148 Regulator of K+ conductance, N-terminal Thimo_1241 IPR006037 Regulator of K+ conductance, C-terminal Thimo_1241 IPR006036 Potassium uptake protein TrkA Thimo_1242 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_1242 IPR025944 Sigma-54 interaction domain, conserved site Thimo_1242 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1242 IPR002197 DNA binding HTH domain, Fis-type Thimo_1242 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_1242 IPR001789 Signal transduction response regulator, receiver domain Thimo_1242 IPR003593 AAA+ ATPase domain Thimo_1242 IPR011006 CheY-like superfamily Thimo_1242 IPR009057 Homeobox-like domain superfamily Thimo_1243 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_1243 IPR035965 PAS domain superfamily Thimo_1243 IPR013767 PAS fold Thimo_1243 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_1243 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator Thimo_1243 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1243 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1243 IPR005467 Histidine kinase domain Thimo_1243 IPR000014 PAS domain Thimo_1243 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_1243 IPR003660 HAMP domain Thimo_1245 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1245 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site Thimo_1245 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type Thimo_1245 IPR035926 NusB-like superfamily Thimo_1245 IPR006027 NusB/RsmB/TIM44 Thimo_1245 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_1245 IPR004573 rRNA small subunit methyltransferase B Thimo_1246 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain Thimo_1246 IPR005794 Methionyl-tRNA formyltransferase Thimo_1246 IPR005793 Formyl transferase, C-terminal Thimo_1246 IPR037022 Formyl transferase, C-terminal domain superfamily Thimo_1246 IPR002376 Formyl transferase, N-terminal Thimo_1246 IPR036477 Formyl transferase, N-terminal domain superfamily Thimo_1246 IPR001555 Phosphoribosylglycinamide formyltransferase, active site Thimo_1246 IPR011034 Formyl transferase-like, C-terminal domain superfamily Thimo_1247 IPR023635 Peptide deformylase Thimo_1247 IPR036821 Peptide deformylase superfamily Thimo_1249 IPR003488 DNA recombination-mediator protein A Thimo_1249 IPR041614 DprA, winged helix domain Thimo_1249 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1250 IPR007456 Smg Thimo_1252 IPR037294 ABC transporter, BtuC-like Thimo_1252 IPR001626 ABC transporter, TroCD-like Thimo_1253 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1253 IPR037294 ABC transporter, BtuC-like Thimo_1253 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1253 IPR001626 ABC transporter, TroCD-like Thimo_1254 IPR003439 ABC transporter-like Thimo_1254 IPR017871 ABC transporter, conserved site Thimo_1254 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1254 IPR003593 AAA+ ATPase domain Thimo_1255 IPR006129 Adhesin B Thimo_1255 IPR006127 Periplasmic solute binding protein, ZnuA-like Thimo_1255 IPR006128 Adhesion lipoprotein Thimo_1256 IPR000380 DNA topoisomerase, type IA Thimo_1256 IPR003601 DNA topoisomerase, type IA, domain 2 Thimo_1256 IPR023406 DNA topoisomerase, type IA, active site Thimo_1256 IPR013497 DNA topoisomerase, type IA, central Thimo_1256 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Thimo_1256 IPR023405 DNA topoisomerase, type IA, core domain Thimo_1256 IPR005733 DNA topoisomerase I, bacterial-type Thimo_1256 IPR028612 DNA topoisomerase I, type IA Thimo_1256 IPR025589 Topoisomerase C-terminal repeat Thimo_1256 IPR006171 TOPRIM domain Thimo_1256 IPR034149 DNA topoisomerase 1, TOPRIM domain Thimo_1256 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Thimo_1256 IPR003602 DNA topoisomerase, type IA, DNA-binding domain Thimo_1256 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Thimo_1257 IPR006070 YrdC-like domain Thimo_1257 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_1257 IPR023535 Threonylcarbamoyl-AMP synthase Thimo_1260 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Thimo_1260 IPR029052 Metallo-dependent phosphatase-like Thimo_1263 IPR008258 Transglycosylase SLT domain 1 Thimo_1263 IPR000189 Prokaryotic transglycosylase, active site Thimo_1263 IPR023346 Lysozyme-like domain superfamily Thimo_1264 IPR021135 Phosphoenolpyruvate carboxylase Thimo_1264 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type Thimo_1264 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site Thimo_1264 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_1265 IPR003445 Cation transporter Thimo_1265 IPR004772 TrkH potassium transport family Thimo_1266 IPR037021 RnfH superfamily Thimo_1266 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_1266 IPR005346 RnfH protein Thimo_1267 IPR010968 Ion-translocating oxidoreductase complex subunit E Thimo_1267 IPR003667 NqrDE/RnfAE Thimo_1268 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG Thimo_1268 IPR007329 FMN-binding Thimo_1269 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD Thimo_1269 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D Thimo_1270 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1270 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1270 IPR019554 Soluble ligand binding domain Thimo_1270 IPR026902 RnfC Barrel sandwich hybrid domain Thimo_1270 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Thimo_1270 IPR009051 Alpha-helical ferredoxin Thimo_1270 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC Thimo_1270 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Thimo_1271 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB Thimo_1271 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria Thimo_1271 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1271 IPR011005 Dihydropteroate synthase-like Thimo_1271 IPR007202 4Fe-4S domain Thimo_1271 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1272 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA Thimo_1272 IPR003667 NqrDE/RnfAE Thimo_1273 IPR001610 PAC motif Thimo_1273 IPR013767 PAS fold Thimo_1273 IPR014285 Nitrogen fixation negative regulator NifL Thimo_1273 IPR005467 Histidine kinase domain Thimo_1273 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1273 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1273 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_1273 IPR035965 PAS domain superfamily Thimo_1273 IPR000014 PAS domain Thimo_1273 IPR000700 PAS-associated, C-terminal Thimo_1274 IPR003018 GAF domain Thimo_1274 IPR029016 GAF-like domain superfamily Thimo_1274 IPR009057 Homeobox-like domain superfamily Thimo_1274 IPR003593 AAA+ ATPase domain Thimo_1274 IPR025944 Sigma-54 interaction domain, conserved site Thimo_1274 IPR010113 Nif-specific regulatory protein Thimo_1274 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1274 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_1274 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_1274 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_1274 IPR002197 DNA binding HTH domain, Fis-type Thimo_1275 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Thimo_1275 IPR021127 CRISPR-associated endonuclease Cas2 Thimo_1276 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain Thimo_1276 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain Thimo_1276 IPR013343 CRISPR-associated protein Cas4 Thimo_1276 IPR022765 Dna2/Cas4, domain of unknown function DUF83 Thimo_1276 IPR002729 CRISPR-associated protein Cas1 Thimo_1276 IPR011604 Exonuclease, phage-type/RecB, C-terminal Thimo_1283 IPR022907 VapC family Thimo_1283 IPR041705 VapC-like Sll0205 protein, PIN domain Thimo_1290 IPR000649 Initiation factor 2B-related Thimo_1290 IPR005251 Methylthioribose-1-phosphate isomerase Thimo_1290 IPR011559 Initiation factor 2B alpha/beta/delta Thimo_1290 IPR037171 NagB/RpiA transferase-like Thimo_1291 IPR006680 Amidohydrolase-related Thimo_1291 IPR011059 Metal-dependent hydrolase, composite domain superfamily Thimo_1291 IPR032466 Metal-dependent hydrolase Thimo_1291 IPR023512 Deaminase MtaD/DadD Thimo_1293 IPR000644 CBS domain Thimo_1294 IPR038377 Sodium/glucose symporter superfamily Thimo_1294 IPR001734 Sodium/solute symporter Thimo_1294 IPR019899 Sodium/solute symporter, VC2705 subfamily Thimo_1296 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_1296 IPR029144 Threonine synthase, N-terminal Thimo_1296 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Thimo_1296 IPR037158 Threonine synthase, N-terminal domain superfamily Thimo_1296 IPR004450 Threonine synthase-like Thimo_1296 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_1297 IPR000891 Pyruvate carboxyltransferase Thimo_1297 IPR013785 Aldolase-type TIM barrel Thimo_1297 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site Thimo_1297 IPR013477 Homocitrate synthase NifV-like Thimo_1299 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal Thimo_1299 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat Thimo_1299 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Thimo_1299 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Thimo_1299 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta Thimo_1299 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily Thimo_1299 IPR005743 DNA gyrase, subunit A Thimo_1300 IPR022278 Phosphoserine aminotransferase Thimo_1300 IPR000192 Aminotransferase class V domain Thimo_1300 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_1300 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1300 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1300 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1301 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thimo_1301 IPR029009 Allosteric substrate binding domain superfamily Thimo_1301 IPR036291 NAD(P)-binding domain superfamily Thimo_1301 IPR006236 D-3-phosphoglycerate dehydrogenase Thimo_1301 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Thimo_1301 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Thimo_1301 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Thimo_1301 IPR002912 ACT domain Thimo_1302 IPR002912 ACT domain Thimo_1302 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase Thimo_1302 IPR018528 Prephenate dehydratase, conserved site Thimo_1302 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain Thimo_1302 IPR001086 Prephenate dehydratase Thimo_1302 IPR036979 Chorismate mutase domain superfamily Thimo_1302 IPR036263 Chorismate mutase type II superfamily Thimo_1302 IPR002701 Chorismate mutase II, prokaryotic-type Thimo_1303 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1303 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Thimo_1303 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1303 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1303 IPR005861 Histidinol-phosphate aminotransferase family Thimo_1303 IPR004839 Aminotransferase, class I/classII Thimo_1304 IPR003099 Prephenate dehydrogenase Thimo_1304 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_1304 IPR036291 NAD(P)-binding domain superfamily Thimo_1305 IPR004680 Citrate transporter-like domain Thimo_1309 IPR004680 Citrate transporter-like domain Thimo_1309 IPR031312 Sodium/sulphate symporter, conserved site Thimo_1309 IPR006037 Regulator of K+ conductance, C-terminal Thimo_1309 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Thimo_1313 IPR000092 Polyprenyl synthetase Thimo_1313 IPR033749 Polyprenyl synthetase, conserved site Thimo_1313 IPR008949 Isoprenoid synthase domain superfamily Thimo_1314 IPR028909 Ribosomal protein L21-like Thimo_1314 IPR036164 L21-like superfamily Thimo_1314 IPR001787 Ribosomal protein L21 Thimo_1314 IPR018258 Ribosomal protein L21, conserved site Thimo_1315 IPR018261 Ribosomal protein L27, conserved site Thimo_1315 IPR001684 Ribosomal protein L27 Thimo_1316 IPR036726 GTP1/OBG domain superfamily Thimo_1316 IPR006073 GTP binding domain Thimo_1316 IPR006074 GTP1/OBG, conserved site Thimo_1316 IPR031167 OBG-type guanine nucleotide-binding (G) domain Thimo_1316 IPR035101 GTP-binding protein, Obg-type Thimo_1316 IPR014100 GTP-binding protein Obg/CgtA Thimo_1316 IPR006169 GTP1/OBG domain Thimo_1316 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1317 IPR002478 PUA domain Thimo_1317 IPR015947 PUA-like superfamily Thimo_1317 IPR019797 Glutamate 5-kinase, conserved site Thimo_1317 IPR036393 Acetylglutamate kinase-like superfamily Thimo_1317 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase Thimo_1317 IPR001057 Glutamate/acetylglutamate kinase Thimo_1317 IPR041739 Glutamate-5-kinase domain Thimo_1317 IPR001048 Aspartate/glutamate/uridylate kinase Thimo_1317 IPR036974 PUA domain superfamily Thimo_1317 IPR011529 Glutamate 5-kinase Thimo_1318 IPR006309 DNA polymerase 3, epsilon subunit Thimo_1318 IPR036397 Ribonuclease H superfamily Thimo_1318 IPR012337 Ribonuclease H-like superfamily Thimo_1318 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1318 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain Thimo_1319 IPR018490 Cyclic nucleotide-binding-like Thimo_1319 IPR018335 Transcription regulator HTH, Crp-type, conserved site Thimo_1319 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1319 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1319 IPR014710 RmlC-like jelly roll fold Thimo_1319 IPR012318 Crp-type HTH domain Thimo_1319 IPR000595 Cyclic nucleotide-binding domain Thimo_1321 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1321 IPR029062 Class I glutamine amidotransferase-like Thimo_1321 IPR004468 CTP synthase Thimo_1321 IPR017456 CTP synthase, N-terminal Thimo_1321 IPR033828 CTP synthase GATase domain Thimo_1321 IPR017926 Glutamine amidotransferase Thimo_1322 IPR013785 Aldolase-type TIM barrel Thimo_1322 IPR006269 3-deoxy-8-phosphooctulonate synthase Thimo_1322 IPR006218 DAHP synthetase I/KDSA Thimo_1323 IPR029017 Enolase-like, N-terminal Thimo_1323 IPR020810 Enolase, C-terminal TIM barrel domain Thimo_1323 IPR020809 Enolase, conserved site Thimo_1323 IPR020811 Enolase, N-terminal Thimo_1323 IPR036849 Enolase-like, C-terminal domain superfamily Thimo_1323 IPR000941 Enolase Thimo_1324 IPR007060 Septum formation initiator FtsL/DivIC Thimo_1324 IPR023081 Cell division protein FtsB Thimo_1325 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thimo_1325 IPR034683 Cytidylyltransferase IspD/TarI Thimo_1325 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site Thimo_1325 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1326 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Thimo_1326 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site Thimo_1326 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily Thimo_1327 IPR042214 Pseudouridine synthase, TruD, catalytic domain Thimo_1327 IPR011760 Pseudouridine synthase, TruD, insertion domain Thimo_1327 IPR020119 Pseudouridine synthase TruD, conserved site Thimo_1327 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_1327 IPR001656 Pseudouridine synthase, TruD Thimo_1329 IPR036523 SurE-like phosphatase/nucleotidase superfamily Thimo_1329 IPR002828 Survival protein SurE-like phosphatase/nucleotidase Thimo_1329 IPR030048 Survival protein SurE Thimo_1330 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase Thimo_1330 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1331 IPR032816 SNARE associated Golgi protein Thimo_1332 IPR011055 Duplicated hybrid motif Thimo_1332 IPR036779 LysM domain superfamily Thimo_1332 IPR016047 Peptidase M23 Thimo_1332 IPR018392 LysM domain Thimo_1333 IPR013325 RNA polymerase sigma factor, region 2 Thimo_1333 IPR007630 RNA polymerase sigma-70 region 4 Thimo_1333 IPR007624 RNA polymerase sigma-70 region 3 Thimo_1333 IPR007627 RNA polymerase sigma-70 region 2 Thimo_1333 IPR012761 RNA polymerase sigma factor RpoS Thimo_1333 IPR009042 RNA polymerase sigma-70 region 1.2 Thimo_1333 IPR000943 RNA polymerase sigma-70 Thimo_1333 IPR014284 RNA polymerase sigma-70 like domain Thimo_1333 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_1333 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1338 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site Thimo_1338 IPR000883 Cytochrome c oxidase subunit I Thimo_1338 IPR036927 Cytochrome c oxidase-like, subunit I superfamily Thimo_1338 IPR004677 Cytochrome c oxidase cbb3-type, subunit I Thimo_1338 IPR023616 Cytochrome c oxidase-like, subunit I domain Thimo_1341 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Thimo_1341 IPR009056 Cytochrome c-like domain Thimo_1341 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Thimo_1341 IPR008168 Cytochrome c, class IC Thimo_1341 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily Thimo_1341 IPR036909 Cytochrome c-like domain superfamily Thimo_1342 IPR032879 FixG, C-terminal immunoglobulin-like domain Thimo_1342 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1342 IPR013783 Immunoglobulin-like fold Thimo_1342 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1342 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG Thimo_1344 IPR006121 Heavy metal-associated domain, HMA Thimo_1344 IPR027256 P-type ATPase, subfamily IB Thimo_1344 IPR001757 P-type ATPase Thimo_1344 IPR006122 Heavy metal-associated domain, copper ion-binding Thimo_1344 IPR036163 Heavy metal-associated domain superfamily Thimo_1344 IPR008250 P-type ATPase, A domain superfamily Thimo_1344 IPR017969 Heavy-metal-associated, conserved site Thimo_1344 IPR036412 HAD-like superfamily Thimo_1344 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_1344 IPR018303 P-type ATPase, phosphorylation site Thimo_1344 IPR023214 HAD superfamily Thimo_1344 IPR023299 P-type ATPase, cytoplasmic domain N Thimo_1346 IPR031691 Lipoyl synthase, N-terminal Thimo_1346 IPR007197 Radical SAM Thimo_1346 IPR013785 Aldolase-type TIM barrel Thimo_1346 IPR006638 Elp3/MiaB/NifB Thimo_1346 IPR003698 Lipoyl synthase Thimo_1347 IPR004619 Type III pantothenate kinase Thimo_1348 IPR012820 Sucrose synthase, plant/cyanobacteria Thimo_1348 IPR000368 Sucrose synthase Thimo_1348 IPR001296 Glycosyl transferase, family 1 Thimo_1349 IPR008914 Phosphatidylethanolamine-binding protein Thimo_1349 IPR005247 YbhB/YbcL Thimo_1349 IPR036610 PEBP-like superfamily Thimo_1350 IPR019734 Tetratricopeptide repeat Thimo_1350 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_1350 IPR013026 Tetratricopeptide repeat-containing domain Thimo_1350 IPR017560 Cytochrome c-type biogenesis protein CcmI Thimo_1351 IPR005616 CcmH/CycL/Ccl2/NrfF family Thimo_1351 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily Thimo_1351 IPR017560 Cytochrome c-type biogenesis protein CcmI Thimo_1351 IPR013026 Tetratricopeptide repeat-containing domain Thimo_1351 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_1351 IPR019734 Tetratricopeptide repeat Thimo_1352 IPR013740 Redoxin Thimo_1352 IPR013766 Thioredoxin domain Thimo_1352 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE Thimo_1352 IPR017937 Thioredoxin, conserved site Thimo_1352 IPR036249 Thioredoxin-like superfamily Thimo_1353 IPR003568 Cytochrome c-type biogenesis protein CcmF Thimo_1353 IPR003567 Cytochrome c-type biogenesis protein Thimo_1353 IPR002541 Cytochrome c assembly protein Thimo_1353 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal Thimo_1354 IPR036127 CcmE-like superfamily Thimo_1354 IPR004329 CcmE/CycJ protein Thimo_1356 IPR002541 Cytochrome c assembly protein Thimo_1356 IPR003557 Cytochrome c-type biogenesis protein CcmC Thimo_1357 IPR003544 Cytochrome c-type biogenesis protein CcmB Thimo_1357 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Thimo_1358 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1358 IPR005895 ABC transporter, haem export, CcmA Thimo_1358 IPR017871 ABC transporter, conserved site Thimo_1358 IPR003439 ABC transporter-like Thimo_1358 IPR003593 AAA+ ATPase domain Thimo_1359 IPR022417 Porphobilinogen deaminase, N-terminal Thimo_1359 IPR022418 Porphobilinogen deaminase, C-terminal Thimo_1359 IPR000860 Porphobilinogen deaminase Thimo_1359 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site Thimo_1359 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily Thimo_1360 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase Thimo_1360 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily Thimo_1360 IPR039793 Uroporphyrinogen-III synthase Thimo_1365 IPR002830 UbiD decarboxylyase family Thimo_1365 IPR023677 UbiD decarboxylyase, bacteria Thimo_1366 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 Thimo_1366 IPR001567 Peptidase M3A/M3B catalytic domain Thimo_1368 IPR001451 Hexapeptide repeat Thimo_1368 IPR011004 Trimeric LpxA-like superfamily Thimo_1369 IPR003399 Mce/MlaD Thimo_1371 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type Thimo_1371 IPR007498 Intermembrane transport protein PqiA-like Thimo_1372 IPR028427 Peptide methionine sulfoxide reductase Thimo_1372 IPR011057 Mss4-like superfamily Thimo_1372 IPR002579 Peptide methionine sulphoxide reductase MrsB Thimo_1374 IPR001533 Pterin 4 alpha carbinolamine dehydratase Thimo_1374 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily Thimo_1378 IPR026591 Sirtuin, catalytic core small domain superfamily Thimo_1378 IPR003000 Sirtuin family Thimo_1378 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_1378 IPR026590 Sirtuin family, catalytic core domain Thimo_1378 IPR027546 Sirtuin, class III Thimo_1383 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic Thimo_1383 IPR008254 Flavodoxin/nitric oxide synthase Thimo_1383 IPR029039 Flavoprotein-like superfamily Thimo_1383 IPR010089 Flavoprotein WrbA-like Thimo_1383 IPR005025 NADPH-dependent FMN reductase-like Thimo_1386 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_1386 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1386 IPR011006 CheY-like superfamily Thimo_1386 IPR039420 Transcriptional regulatory protein WalR-like Thimo_1386 IPR001789 Signal transduction response regulator, receiver domain Thimo_1387 IPR013515 Phytochrome, central region Thimo_1387 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_1387 IPR001294 Phytochrome Thimo_1387 IPR003018 GAF domain Thimo_1387 IPR013654 PAS fold-2 Thimo_1387 IPR029016 GAF-like domain superfamily Thimo_1387 IPR035965 PAS domain superfamily Thimo_1387 IPR005467 Histidine kinase domain Thimo_1387 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_1387 IPR000014 PAS domain Thimo_1387 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1387 IPR016132 Phytochrome chromophore attachment domain Thimo_1387 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1388 IPR010996 DNA polymerase beta-like, N-terminal domain Thimo_1388 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_1388 IPR016195 Polymerase/histidinol phosphatase-like Thimo_1388 IPR029398 DNA polymerase beta, thumb domain Thimo_1388 IPR022311 Uncharacterised conserved protein UCP005047, YshC Thimo_1388 IPR004013 PHP domain Thimo_1388 IPR002054 DNA-directed DNA polymerase X Thimo_1388 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Thimo_1388 IPR027421 DNA polymerase lambda lyase domain superfamily Thimo_1388 IPR037160 DNA polymerase, thumb domain superfamily Thimo_1389 IPR005952 Phosphoglycerate mutase 1 Thimo_1389 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Thimo_1389 IPR029033 Histidine phosphatase superfamily Thimo_1389 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_1394 IPR025105 Domain of unknown function DUF4010 Thimo_1397 IPR028261 Dihydroprymidine dehydrogenase domain II Thimo_1397 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1397 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 Thimo_1397 IPR009051 Alpha-helical ferredoxin Thimo_1397 IPR023753 FAD/NAD(P)-binding domain Thimo_1399 IPR011006 CheY-like superfamily Thimo_1399 IPR009057 Homeobox-like domain superfamily Thimo_1399 IPR002197 DNA binding HTH domain, Fis-type Thimo_1399 IPR003593 AAA+ ATPase domain Thimo_1399 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1399 IPR001789 Signal transduction response regulator, receiver domain Thimo_1399 IPR025944 Sigma-54 interaction domain, conserved site Thimo_1399 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_1399 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_1399 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_1403 IPR013785 Aldolase-type TIM barrel Thimo_1403 IPR033888 Dihydroorotate dehydrogenase, class 1B Thimo_1403 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 Thimo_1403 IPR024920 Dihydroorotate dehydrogenase, class 1 Thimo_1403 IPR005720 Dihydroorotate dehydrogenase domain Thimo_1403 IPR001295 Dihydroorotate dehydrogenase, conserved site Thimo_1404 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_1404 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Thimo_1404 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1404 IPR029061 Thiamin diphosphate-binding fold Thimo_1404 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain Thimo_1404 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Thimo_1404 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain Thimo_1404 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal Thimo_1404 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1404 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain Thimo_1404 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily Thimo_1404 IPR011895 Pyruvate-flavodoxin oxidoreductase Thimo_1405 IPR010107 Glutamate decarboxylase Thimo_1405 IPR002129 Pyridoxal phosphate-dependent decarboxylase Thimo_1405 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1405 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1407 IPR018698 VWA-like domain Thimo_1407 IPR025154 Putative metallopeptidase domain Thimo_1413 IPR019734 Tetratricopeptide repeat Thimo_1413 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_1413 IPR013026 Tetratricopeptide repeat-containing domain Thimo_1413 IPR030873 Beta-barrel assembly-enhancing protease Thimo_1413 IPR001915 Peptidase M48 Thimo_1414 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1414 IPR001296 Glycosyl transferase, family 1 Thimo_1415 IPR001296 Glycosyl transferase, family 1 Thimo_1416 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1416 IPR001296 Glycosyl transferase, family 1 Thimo_1417 IPR001296 Glycosyl transferase, family 1 Thimo_1430 IPR003439 ABC transporter-like Thimo_1430 IPR003593 AAA+ ATPase domain Thimo_1430 IPR017911 ABC transporter, macrolide export, ATP-binding domain Thimo_1430 IPR017871 ABC transporter, conserved site Thimo_1430 IPR025857 MacB-like periplasmic core domain Thimo_1430 IPR003838 ABC transporter permease protein domain Thimo_1430 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1431 IPR017911 ABC transporter, macrolide export, ATP-binding domain Thimo_1431 IPR003439 ABC transporter-like Thimo_1431 IPR003838 ABC transporter permease protein domain Thimo_1431 IPR025857 MacB-like periplasmic core domain Thimo_1431 IPR017871 ABC transporter, conserved site Thimo_1431 IPR003593 AAA+ ATPase domain Thimo_1431 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1432 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1432 IPR017871 ABC transporter, conserved site Thimo_1432 IPR003593 AAA+ ATPase domain Thimo_1432 IPR003439 ABC transporter-like Thimo_1436 IPR014043 Acyl transferase Thimo_1436 IPR016039 Thiolase-like Thimo_1436 IPR006162 Phosphopantetheine attachment site Thimo_1436 IPR009081 Phosphopantetheine binding ACP domain Thimo_1436 IPR020806 Polyketide synthase, phosphopantetheine-binding domain Thimo_1436 IPR013968 Polyketide synthase, ketoreductase domain Thimo_1436 IPR036736 ACP-like superfamily Thimo_1436 IPR020807 Polyketide synthase, dehydratase domain Thimo_1436 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Thimo_1436 IPR032821 Ketoacyl-synthetase, C-terminal extension Thimo_1436 IPR036291 NAD(P)-binding domain superfamily Thimo_1436 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Thimo_1436 IPR014030 Beta-ketoacyl synthase, N-terminal Thimo_1436 IPR014031 Beta-ketoacyl synthase, C-terminal Thimo_1436 IPR042104 Polyketide synthase, dehydratase domain superfamily Thimo_1436 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1436 IPR018201 Beta-ketoacyl synthase, active site Thimo_1437 IPR020807 Polyketide synthase, dehydratase domain Thimo_1437 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Thimo_1437 IPR036291 NAD(P)-binding domain superfamily Thimo_1437 IPR032821 Ketoacyl-synthetase, C-terminal extension Thimo_1437 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Thimo_1437 IPR014043 Acyl transferase Thimo_1437 IPR042104 Polyketide synthase, dehydratase domain superfamily Thimo_1437 IPR020843 Polyketide synthase, enoylreductase domain Thimo_1437 IPR013968 Polyketide synthase, ketoreductase domain Thimo_1437 IPR020806 Polyketide synthase, phosphopantetheine-binding domain Thimo_1437 IPR009081 Phosphopantetheine binding ACP domain Thimo_1437 IPR006162 Phosphopantetheine attachment site Thimo_1437 IPR016039 Thiolase-like Thimo_1437 IPR001227 Acyl transferase domain superfamily Thimo_1437 IPR014030 Beta-ketoacyl synthase, N-terminal Thimo_1437 IPR014031 Beta-ketoacyl synthase, C-terminal Thimo_1437 IPR036736 ACP-like superfamily Thimo_1437 IPR018201 Beta-ketoacyl synthase, active site Thimo_1437 IPR011032 GroES-like superfamily Thimo_1437 IPR013154 Alcohol dehydrogenase, N-terminal Thimo_1437 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1437 IPR013149 Alcohol dehydrogenase, C-terminal Thimo_1438 IPR009081 Phosphopantetheine binding ACP domain Thimo_1438 IPR003231 Acyl carrier protein (ACP) Thimo_1438 IPR036736 ACP-like superfamily Thimo_1441 IPR000639 Epoxide hydrolase-like Thimo_1441 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1441 IPR029058 Alpha/Beta hydrolase fold Thimo_1442 IPR019913 Pyrimidine utilisation protein RutD Thimo_1442 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1442 IPR029058 Alpha/Beta hydrolase fold Thimo_1444 IPR039426 Vitamin B12 transporter BtuB-like Thimo_1444 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_1444 IPR010101 TonB-dependent vitamin B12 transporter BtuB Thimo_1444 IPR012910 TonB-dependent receptor, plug domain Thimo_1444 IPR037066 TonB-dependent receptor, plug domain superfamily Thimo_1444 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_1448 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1448 IPR001296 Glycosyl transferase, family 1 Thimo_1450 IPR007197 Radical SAM Thimo_1450 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_1450 IPR006158 Cobalamin (vitamin B12)-binding domain Thimo_1450 IPR025274 Domain of unknown function DUF4070 Thimo_1450 IPR034530 Hopanoid C2-methyltransferase, HpnP-like Thimo_1450 IPR006638 Elp3/MiaB/NifB Thimo_1454 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1454 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain Thimo_1454 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1454 IPR005119 LysR, substrate-binding Thimo_1454 IPR000847 Transcription regulator HTH, LysR Thimo_1455 IPR038071 UROD/MetE-like superfamily Thimo_1455 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal Thimo_1455 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal Thimo_1455 IPR006276 Cobalamin-independent methionine synthase Thimo_1456 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily Thimo_1456 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK Thimo_1457 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Thimo_1457 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_1458 IPR001296 Glycosyl transferase, family 1 Thimo_1458 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1461 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Thimo_1461 IPR023214 HAD superfamily Thimo_1461 IPR036412 HAD-like superfamily Thimo_1462 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_1462 IPR022927 RNA pyrophosphohydrolase RppH Thimo_1462 IPR000086 NUDIX hydrolase domain Thimo_1462 IPR020084 NUDIX hydrolase, conserved site Thimo_1463 IPR003018 GAF domain Thimo_1463 IPR040442 Pyruvate kinase-like domain superfamily Thimo_1463 IPR023151 PEP-utilising enzyme, conserved site Thimo_1463 IPR036637 Phosphohistidine domain superfamily Thimo_1463 IPR006318 Phosphotransferase system, enzyme I-like Thimo_1463 IPR008731 Phosphotransferase system, enzyme I N-terminal Thimo_1463 IPR036618 PtsI, HPr-binding domain superfamily Thimo_1463 IPR008279 PEP-utilising enzyme, mobile domain Thimo_1463 IPR018274 PEP-utilising enzyme, active site Thimo_1463 IPR000121 PEP-utilising enzyme, C-terminal Thimo_1463 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_1463 IPR029016 GAF-like domain superfamily Thimo_1464 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_1464 IPR004490 Glycolate oxidase subunit GlcD Thimo_1464 IPR006094 FAD linked oxidase, N-terminal Thimo_1464 IPR004113 FAD-linked oxidase, C-terminal Thimo_1464 IPR016164 FAD-linked oxidase-like, C-terminal Thimo_1464 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_1464 IPR016166 FAD-binding domain, PCMH-type Thimo_1466 IPR011335 Restriction endonuclease type II-like Thimo_1466 IPR011856 tRNA endonuclease-like domain superfamily Thimo_1466 IPR003509 Uncharacterised protein family UPF0102 Thimo_1467 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_1467 IPR018063 SAM-dependent methyltransferase RsmI, conserved site Thimo_1467 IPR035996 Tetrapyrrole methylase superfamily Thimo_1467 IPR000878 Tetrapyrrole methylase Thimo_1467 IPR008189 rRNA small subunit methyltransferase I Thimo_1467 IPR014776 Tetrapyrrole methylase, subdomain 2 Thimo_1468 IPR024083 Fumarase/histidase, N-terminal Thimo_1468 IPR022761 Fumarate lyase, N-terminal Thimo_1468 IPR020557 Fumarate lyase, conserved site Thimo_1468 IPR013539 Adenylosuccinate lyase PurB, C-terminal Thimo_1468 IPR004769 Adenylosuccinate lyase Thimo_1468 IPR000362 Fumarate lyase family Thimo_1468 IPR008948 L-Aspartase-like Thimo_1469 IPR006249 Aconitase/Iron-responsive element-binding protein 2 Thimo_1469 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Thimo_1469 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Thimo_1469 IPR036008 Aconitase, iron-sulfur domain Thimo_1469 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Thimo_1469 IPR018136 Aconitase family, 4Fe-4S cluster binding site Thimo_1470 IPR001463 Sodium:alanine symporter Thimo_1471 IPR002634 BolA protein Thimo_1471 IPR036065 BolA-like superfamily Thimo_1478 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site Thimo_1478 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Thimo_1478 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding Thimo_1478 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain Thimo_1478 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily Thimo_1478 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1478 IPR023546 Methylated-DNA--protein-cysteine methyltransferase Thimo_1479 IPR011010 DNA breaking-rejoining enzyme, catalytic core Thimo_1479 IPR013762 Integrase-like, catalytic domain superfamily Thimo_1479 IPR002104 Integrase, catalytic domain Thimo_1479 IPR010998 Integrase/recombinase, N-terminal Thimo_1479 IPR004107 Integrase, SAM-like, N-terminal Thimo_1479 IPR023009 Tyrosine recombinase XerC/XerD Thimo_1479 IPR011932 Tyrosine recombinase XerD Thimo_1480 IPR035570 UPF0234, N-terminal Thimo_1480 IPR035571 UPF0234-like, C-terminal Thimo_1480 IPR007551 Protein of unknown function DUF520 Thimo_1480 IPR036183 YajQ-like superfamily Thimo_1481 IPR033954 Disulphide bond isomerase, DsbC/G Thimo_1481 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Thimo_1481 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily Thimo_1481 IPR017937 Thioredoxin, conserved site Thimo_1481 IPR012336 Thioredoxin-like fold Thimo_1481 IPR036249 Thioredoxin-like superfamily Thimo_1482 IPR036457 PPM-type phosphatase domain superfamily Thimo_1482 IPR015655 Protein phosphatase 2C family Thimo_1482 IPR001932 PPM-type phosphatase domain Thimo_1486 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1486 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Thimo_1486 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_1486 IPR022879 V-type ATP synthase regulatory subunit B/beta Thimo_1487 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1487 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal Thimo_1487 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_1487 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily Thimo_1487 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension Thimo_1487 IPR022878 V-type ATP synthase catalytic alpha chain Thimo_1487 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Thimo_1488 IPR002842 V-type ATPase subunit E Thimo_1488 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily Thimo_1490 IPR038662 F1F0 ATP synthase subunit C superfamily Thimo_1490 IPR002379 V-ATPase proteolipid subunit C-like domain Thimo_1490 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Thimo_1490 IPR035921 F/V-ATP synthase subunit C superfamily Thimo_1490 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast Thimo_1490 IPR000454 ATP synthase, F0 complex, subunit C Thimo_1491 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family Thimo_1500 IPR024899 Nitrogen fixation-sustaining protein CowN Thimo_1506 IPR017924 RNA-binding protein YhbY Thimo_1506 IPR035920 YhbY-like superfamily Thimo_1506 IPR001890 RNA-binding, CRM domain Thimo_1509 IPR035980 Ribosomal protein S6 superfamily Thimo_1509 IPR020814 Ribosomal protein S6, plastid/chloroplast Thimo_1509 IPR000529 Ribosomal protein S6 Thimo_1509 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Thimo_1510 IPR001648 Ribosomal protein S18 Thimo_1510 IPR036870 Ribosomal protein S18 superfamily Thimo_1510 IPR018275 Ribosomal protein S18, conserved site Thimo_1512 IPR020594 Ribosomal protein L9, bacteria/chloroplast Thimo_1512 IPR020069 Ribosomal protein L9, C-terminal Thimo_1512 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Thimo_1512 IPR020070 Ribosomal protein L9, N-terminal Thimo_1512 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Thimo_1512 IPR000244 Ribosomal protein L9 Thimo_1512 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Thimo_1513 IPR007693 DNA helicase, DnaB-like, N-terminal Thimo_1513 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1513 IPR003593 AAA+ ATPase domain Thimo_1513 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily Thimo_1513 IPR007692 DNA helicase, DnaB type Thimo_1513 IPR007694 DNA helicase, DnaB-like, C-terminal Thimo_1513 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Thimo_1514 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site Thimo_1514 IPR001608 Alanine racemase, N-terminal Thimo_1514 IPR029066 PLP-binding barrel Thimo_1514 IPR000821 Alanine racemase Thimo_1514 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Thimo_1514 IPR011079 Alanine racemase, C-terminal Thimo_1515 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1515 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1515 IPR003593 AAA+ ATPase domain Thimo_1515 IPR004504 DNA repair protein RadA Thimo_1515 IPR041166 LapB, rubredoxin metal binding domain Thimo_1515 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain Thimo_1515 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1516 IPR001296 Glycosyl transferase, family 1 Thimo_1516 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1519 IPR032816 SNARE associated Golgi protein Thimo_1521 IPR036629 YjbJ superfamily Thimo_1521 IPR008462 CsbD-like domain Thimo_1521 IPR026042 Stress response protein YjbJ Thimo_1522 IPR000612 Proteolipid membrane potential modulator Thimo_1523 IPR002549 Transmembrane protein TqsA-like Thimo_1524 IPR019831 Manganese/iron superoxide dismutase, N-terminal Thimo_1524 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily Thimo_1524 IPR001189 Manganese/iron superoxide dismutase Thimo_1524 IPR019833 Manganese/iron superoxide dismutase, binding site Thimo_1524 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily Thimo_1524 IPR019832 Manganese/iron superoxide dismutase, C-terminal Thimo_1525 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone Thimo_1525 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily Thimo_1525 IPR018152 Superoxide dismutase, copper/zinc, binding site Thimo_1525 IPR001424 Superoxide dismutase, copper/zinc binding domain Thimo_1530 IPR035979 RNA-binding domain superfamily Thimo_1530 IPR000504 RNA recognition motif domain Thimo_1530 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_1532 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1532 IPR004498 Ribosomal protein L11 methyltransferase Thimo_1536 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1536 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Thimo_1536 IPR003439 ABC transporter-like Thimo_1536 IPR017871 ABC transporter, conserved site Thimo_1536 IPR003593 AAA+ ATPase domain Thimo_1537 IPR003593 AAA+ ATPase domain Thimo_1537 IPR003439 ABC transporter-like Thimo_1537 IPR017871 ABC transporter, conserved site Thimo_1537 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1537 IPR000253 Forkhead-associated (FHA) domain Thimo_1537 IPR008984 SMAD/FHA domain superfamily Thimo_1537 IPR013525 ABC-2 type transporter Thimo_1538 IPR011009 Protein kinase-like domain superfamily Thimo_1538 IPR005543 PASTA domain Thimo_1538 IPR000719 Protein kinase domain Thimo_1538 IPR017441 Protein kinase, ATP binding site Thimo_1538 IPR008271 Serine/threonine-protein kinase, active site Thimo_1542 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_1542 IPR035906 MetI-like superfamily Thimo_1542 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Thimo_1543 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Thimo_1543 IPR035906 MetI-like superfamily Thimo_1543 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_1544 IPR018313 Solute-binding protein family 3, conserved site Thimo_1544 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_1547 IPR013785 Aldolase-type TIM barrel Thimo_1547 IPR001585 Transaldolase/Fructose-6-phosphate aldolase Thimo_1547 IPR004732 Transaldolase type 2 Thimo_1547 IPR018225 Transaldolase, active site Thimo_1550 IPR004772 TrkH potassium transport family Thimo_1550 IPR003445 Cation transporter Thimo_1559 IPR017039 Virulence factor BrkB Thimo_1560 IPR010305 Protein of unknown function DUF903 Thimo_1560 IPR010920 LSM domain superfamily Thimo_1561 IPR012676 TGS-like Thimo_1561 IPR004095 TGS Thimo_1561 IPR002912 ACT domain Thimo_1561 IPR004811 RelA/SpoT family Thimo_1561 IPR033655 RelA, TGS domain Thimo_1561 IPR012675 Beta-grasp domain superfamily Thimo_1561 IPR007685 RelA/SpoT Thimo_1561 IPR003607 HD/PDEase domain Thimo_1565 IPR017871 ABC transporter, conserved site Thimo_1565 IPR003439 ABC transporter-like Thimo_1565 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1565 IPR003593 AAA+ ATPase domain Thimo_1566 IPR013830 SGNH hydrolase-type esterase domain Thimo_1566 IPR036514 SGNH hydrolase superfamily Thimo_1568 IPR003399 Mce/MlaD Thimo_1570 IPR035909 Methylesterase CheB, C-terminal Thimo_1570 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_1570 IPR000780 MCP methyltransferase, CheR-type Thimo_1570 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase Thimo_1570 IPR000014 PAS domain Thimo_1570 IPR035965 PAS domain superfamily Thimo_1570 IPR013656 PAS fold-4 Thimo_1570 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1570 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_1571 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type Thimo_1571 IPR035909 Methylesterase CheB, C-terminal Thimo_1571 IPR011006 CheY-like superfamily Thimo_1571 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase Thimo_1571 IPR001789 Signal transduction response regulator, receiver domain Thimo_1573 IPR005372 Uncharacterised protein family UPF0182 Thimo_1576 IPR002514 Transposase IS3/IS911family Thimo_1576 IPR009057 Homeobox-like domain superfamily Thimo_1576 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1578 IPR029062 Class I glutamine amidotransferase-like Thimo_1578 IPR033752 MetA family Thimo_1580 IPR006657 Molybdopterin dinucleotide-binding domain Thimo_1580 IPR006656 Molybdopterin oxidoreductase Thimo_1580 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Thimo_1580 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_1581 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1581 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1582 IPR007059 DMSO reductase anchor subunit (DmsC) Thimo_1583 IPR023480 Uncharacterised protein family UPF0312/YceI Thimo_1583 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Thimo_1583 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Thimo_1584 IPR016174 Di-haem cytochrome, transmembrane Thimo_1584 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Thimo_1588 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Thimo_1588 IPR023753 FAD/NAD(P)-binding domain Thimo_1588 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1588 IPR023536 Coenzyme A disulphide reductase, staphyolococci Thimo_1588 IPR017758 Coenzyme A disulphide reductase Thimo_1588 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_1589 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 Thimo_1589 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1589 IPR028261 Dihydroprymidine dehydrogenase domain II Thimo_1589 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1589 IPR023753 FAD/NAD(P)-binding domain Thimo_1589 IPR009051 Alpha-helical ferredoxin Thimo_1590 IPR005134 Uncharacterised protein family UPF0114 Thimo_1590 IPR020761 Uncharacterised protein family UPF0114, bacteria Thimo_1591 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site Thimo_1591 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding Thimo_1591 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain Thimo_1591 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type Thimo_1591 IPR035937 MutM-like, N-terminal Thimo_1591 IPR010979 Ribosomal protein S13-like, H2TH Thimo_1592 IPR003593 AAA+ ATPase domain Thimo_1592 IPR013701 DEAD/H associated Thimo_1592 IPR011545 DEAD/DEAH box helicase domain Thimo_1592 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1592 IPR001650 Helicase, C-terminal Thimo_1592 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1597 IPR022488 Polyphosphate kinase-2-related Thimo_1597 IPR022489 Polyphosphate:AMP phosphotransferase Thimo_1597 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1598 IPR006683 Thioesterase domain Thimo_1598 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase Thimo_1598 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain Thimo_1598 IPR029069 HotDog domain superfamily Thimo_1602 IPR001036 Acriflavin resistance protein Thimo_1602 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1604 IPR036950 Penicillin binding protein transglycosylase domain Thimo_1604 IPR012338 Beta-lactamase/transpeptidase-like Thimo_1604 IPR001460 Penicillin-binding protein, transpeptidase Thimo_1604 IPR001264 Glycosyl transferase, family 51 Thimo_1604 IPR031376 Penicillin-binding protein, OB-like domain Thimo_1604 IPR023346 Lysozyme-like domain superfamily Thimo_1605 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1605 IPR010225 ATP-dependent helicase HrpB Thimo_1605 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal Thimo_1605 IPR007502 Helicase-associated domain Thimo_1605 IPR001650 Helicase, C-terminal Thimo_1605 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1605 IPR011545 DEAD/DEAH box helicase domain Thimo_1607 IPR001789 Signal transduction response regulator, receiver domain Thimo_1607 IPR011006 CheY-like superfamily Thimo_1607 IPR029787 Nucleotide cyclase Thimo_1607 IPR000160 GGDEF domain Thimo_1609 IPR004095 TGS Thimo_1609 IPR012676 TGS-like Thimo_1609 IPR023192 TGS-like domain superfamily Thimo_1609 IPR006073 GTP binding domain Thimo_1609 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 Thimo_1609 IPR013029 YchF, C-terminal domain Thimo_1609 IPR041706 YchF, N-terminal Thimo_1609 IPR031167 OBG-type guanine nucleotide-binding (G) domain Thimo_1609 IPR012675 Beta-grasp domain superfamily Thimo_1609 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1613 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Thimo_1613 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase Thimo_1615 IPR005856 Cysteine synthase Thimo_1615 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_1615 IPR005858 Cysteine synthase CysM Thimo_1615 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Thimo_1615 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_1616 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Thimo_1616 IPR012340 Nucleic acid-binding, OB-fold Thimo_1616 IPR030390 RNA methyltransferase TrmA, active site Thimo_1616 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1616 IPR002792 TRAM domain Thimo_1616 IPR010280 (Uracil-5)-methyltransferase family Thimo_1616 IPR030391 RNA methyltransferase TrmA, conserved site Thimo_1617 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain Thimo_1617 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1619 IPR004805 DNA polymerase III, alpha subunit Thimo_1619 IPR016195 Polymerase/histidinol phosphatase-like Thimo_1619 IPR004013 PHP domain Thimo_1619 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Thimo_1619 IPR029460 DNA polymerase, helix-hairpin-helix motif Thimo_1619 IPR023073 DNA polymerase, error-prone Thimo_1619 IPR040982 DNA polymerase III alpha subunit finger domain Thimo_1619 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain Thimo_1619 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_1621 IPR023400 DNA recombination and repair protein RecA, C-terminal Thimo_1621 IPR020584 DNA recombination/repair protein RecA, conserved site Thimo_1621 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface Thimo_1621 IPR003593 AAA+ ATPase domain Thimo_1621 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain Thimo_1621 IPR013765 DNA recombination and repair protein RecA Thimo_1621 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1622 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1622 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1622 IPR015927 Peptidase S24/S26A/S26B/S26C Thimo_1622 IPR006200 Transcription regulator LexA Thimo_1622 IPR006199 LexA repressor, DNA-binding domain Thimo_1622 IPR036286 LexA/Signal peptidase-like superfamily Thimo_1622 IPR039418 LexA-like Thimo_1622 IPR006197 Peptidase S24, LexA-like Thimo_1623 IPR015942 Asp/Glu/hydantoin racemase Thimo_1623 IPR001920 Asp/Glu racemase Thimo_1623 IPR018187 Asp/Glu racemase, active site 1 Thimo_1623 IPR033134 Asp/Glu racemase, active site 2 Thimo_1623 IPR004391 Glutamate racemase Thimo_1628 IPR018225 Transaldolase, active site Thimo_1628 IPR004730 Transaldolase type 1 Thimo_1628 IPR013785 Aldolase-type TIM barrel Thimo_1628 IPR001585 Transaldolase/Fructose-6-phosphate aldolase Thimo_1631 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1631 IPR000639 Epoxide hydrolase-like Thimo_1631 IPR029058 Alpha/Beta hydrolase fold Thimo_1632 IPR036477 Formyl transferase, N-terminal domain superfamily Thimo_1632 IPR004607 Phosphoribosylglycinamide formyltransferase Thimo_1632 IPR002376 Formyl transferase, N-terminal Thimo_1632 IPR001555 Phosphoribosylglycinamide formyltransferase, active site Thimo_1633 IPR016188 PurM-like, N-terminal domain Thimo_1633 IPR036921 PurM-like, N-terminal domain superfamily Thimo_1633 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase Thimo_1633 IPR036676 PurM-like, C-terminal domain superfamily Thimo_1633 IPR010918 PurM-like, C-terminal domain Thimo_1634 IPR000462 CDP-alcohol phosphatidyltransferase Thimo_1634 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Thimo_1635 IPR013317 Chromosomal replication initiator protein DnaA Thimo_1635 IPR017788 DnaA regulatory inactivator Hda Thimo_1635 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_1635 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae Thimo_1635 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1636 IPR008254 Flavodoxin/nitric oxide synthase Thimo_1636 IPR001226 Flavodoxin, conserved site Thimo_1636 IPR029039 Flavoprotein-like superfamily Thimo_1636 IPR005025 NADPH-dependent FMN reductase-like Thimo_1636 IPR010089 Flavoprotein WrbA-like Thimo_1637 IPR036046 Acylphosphatase-like domain superfamily Thimo_1637 IPR001792 Acylphosphatase-like domain Thimo_1637 IPR020456 Acylphosphatase Thimo_1637 IPR017968 Acylphosphatase, conserved site Thimo_1640 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit Thimo_1640 IPR029058 Alpha/Beta hydrolase fold Thimo_1640 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1641 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit Thimo_1642 IPR020615 Thiolase, acyl-enzyme intermediate active site Thimo_1642 IPR020610 Thiolase, active site Thimo_1642 IPR002155 Thiolase Thimo_1642 IPR020616 Thiolase, N-terminal Thimo_1642 IPR020613 Thiolase, conserved site Thimo_1642 IPR020617 Thiolase, C-terminal Thimo_1642 IPR016039 Thiolase-like Thimo_1643 IPR012909 PHA accumulation regulator DNA-binding, N-terminal Thimo_1643 IPR007897 PHB accumulation regulatory Thimo_1643 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR Thimo_1645 IPR018968 Phasin Thimo_1646 IPR036291 NAD(P)-binding domain superfamily Thimo_1646 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_1646 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 IPR011283 Acetoacetyl-CoA reductase Thimo_1647 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Thimo_1647 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Thimo_1648 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Thimo_1648 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Thimo_1648 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal Thimo_1648 IPR005805 Rieske iron-sulphur protein, C-terminal Thimo_1648 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit Thimo_1648 IPR014349 Rieske iron-sulphur protein Thimo_1649 IPR030689 Cytochrome b Thimo_1649 IPR027387 Cytochrome b/b6-like domain superfamily Thimo_1649 IPR016174 Di-haem cytochrome, transmembrane Thimo_1649 IPR005797 Cytochrome b/b6, N-terminal Thimo_1649 IPR036150 Cytochrome b/b6, C-terminal domain superfamily Thimo_1649 IPR005798 Cytochrome b/b6, C-terminal Thimo_1650 IPR036909 Cytochrome c-like domain superfamily Thimo_1650 IPR002326 Cytochrome c1 Thimo_1650 IPR009056 Cytochrome c-like domain Thimo_1651 IPR004045 Glutathione S-transferase, N-terminal Thimo_1651 IPR004046 Glutathione S-transferase, C-terminal Thimo_1651 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Thimo_1651 IPR040079 Glutathione Transferase family Thimo_1651 IPR010987 Glutathione S-transferase, C-terminal-like Thimo_1651 IPR034341 Stringent starvation protein A, N-terminal Thimo_1651 IPR036249 Thioredoxin-like superfamily Thimo_1652 IPR036760 SspB-like superfamily Thimo_1652 IPR007481 Stringent starvation protein B Thimo_1655 IPR022985 Sulfate transporter CysZ Thimo_1658 IPR036986 RNA-binding S4 domain superfamily Thimo_1658 IPR002942 RNA-binding S4 domain Thimo_1658 IPR025708 Heat shock protein 15 Thimo_1659 IPR002109 Glutaredoxin Thimo_1659 IPR011767 Glutaredoxin active site Thimo_1659 IPR036249 Thioredoxin-like superfamily Thimo_1659 IPR014025 Glutaredoxin subgroup Thimo_1659 IPR011900 Glutaredoxin, GrxC Thimo_1660 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily Thimo_1660 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Thimo_1660 IPR027268 Peptidase M4/M1, CTD superfamily Thimo_1660 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily Thimo_1660 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Thimo_1660 IPR012779 Peptidase M1, alanyl aminopeptidase Thimo_1660 IPR014782 Peptidase M1, membrane alanine aminopeptidase Thimo_1660 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase Thimo_1660 IPR042097 Aminopeptidase N-like , N-terminal Thimo_1665 IPR003346 Transposase, IS116/IS110/IS902 Thimo_1665 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal Thimo_1672 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1673 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1673 IPR003439 ABC transporter-like Thimo_1673 IPR017871 ABC transporter, conserved site Thimo_1673 IPR003593 AAA+ ATPase domain Thimo_1674 IPR000412 ABC-2 transporter Thimo_1675 IPR000412 ABC-2 transporter Thimo_1677 IPR028896 Aminomethyltransferase-like Thimo_1677 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain Thimo_1677 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 Thimo_1677 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Thimo_1677 IPR006223 Glycine cleavage system T protein Thimo_1677 IPR006222 Aminomethyltransferase, folate-binding domain Thimo_1677 IPR022903 Glycine cleavage system T protein, bacteria Thimo_1678 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Thimo_1678 IPR000089 Biotin/lipoyl attachment Thimo_1678 IPR002930 Glycine cleavage system H-protein Thimo_1678 IPR017453 Glycine cleavage system H-protein, subgroup Thimo_1678 IPR011053 Single hybrid motif Thimo_1678 IPR033753 Glycine cleavage system H-protein/Simiate Thimo_1679 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1679 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1679 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1679 IPR020581 Glycine cleavage system P protein Thimo_1679 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 Thimo_1680 IPR002065 Thiol peroxidase Tpx Thimo_1680 IPR013766 Thioredoxin domain Thimo_1680 IPR036249 Thioredoxin-like superfamily Thimo_1680 IPR013740 Redoxin Thimo_1680 IPR018219 Thiol peroxidase conserved site Thimo_1681 IPR020581 Glycine cleavage system P protein Thimo_1681 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1681 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1681 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 Thimo_1681 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1682 IPR033718 Diacylglycerol kinase, prokaryotic Thimo_1682 IPR036945 Diacylglycerol kinase (DAGK) superfamily Thimo_1682 IPR000829 DAGK family Thimo_1683 IPR008284 Molybdenum cofactor biosynthesis, conserved site Thimo_1683 IPR012245 Molybdenum cofactor biosynthesis protein MoaB Thimo_1683 IPR036425 MoaB/Mog-like domain superfamily Thimo_1683 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria Thimo_1683 IPR001453 MoaB/Mog domain Thimo_1684 IPR036688 MoeA, C-terminal, domain IV superfamily Thimo_1684 IPR001453 MoaB/Mog domain Thimo_1684 IPR036425 MoaB/Mog-like domain superfamily Thimo_1684 IPR005110 MoeA, N-terminal and linker domain Thimo_1684 IPR036135 MoeA, N-terminal and linker domain superfamily Thimo_1684 IPR005111 MoeA, C-terminal, domain IV Thimo_1684 IPR008284 Molybdenum cofactor biosynthesis, conserved site Thimo_1684 IPR038987 Molybdopterin biosynthesis protein MoeA-like Thimo_1685 IPR003749 Sulfur carrier ThiS/MoaD-like Thimo_1685 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_1685 IPR012675 Beta-grasp domain superfamily Thimo_1686 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_1686 IPR041095 Elongation Factor G, domain II Thimo_1686 IPR009022 Elongation factor G, domain III Thimo_1686 IPR035647 EF-G domain III/V-like Thimo_1686 IPR005517 Translation elongation factor EFG/EF2, domain IV Thimo_1686 IPR004540 Translation elongation factor EFG/EF2 Thimo_1686 IPR000640 Elongation factor EFG, domain V-like Thimo_1686 IPR004161 Translation elongation factor EFTu-like, domain 2 Thimo_1686 IPR031157 Tr-type G domain, conserved site Thimo_1686 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1686 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1686 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1686 IPR005225 Small GTP-binding protein domain Thimo_1686 IPR000795 Transcription factor, GTP-binding domain Thimo_1686 IPR035649 EFG, domain V Thimo_1687 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1687 IPR041597 L,D-transpeptidase C-terminal domain Thimo_1687 IPR005490 L,D-transpeptidase catalytic domain Thimo_1690 IPR003607 HD/PDEase domain Thimo_1690 IPR037522 HD-GYP domain Thimo_1690 IPR001789 Signal transduction response regulator, receiver domain Thimo_1690 IPR011006 CheY-like superfamily Thimo_1691 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Thimo_1691 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1691 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_1691 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_1691 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_1691 IPR005467 Histidine kinase domain Thimo_1691 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1691 IPR036641 HPT domain superfamily Thimo_1691 IPR011006 CheY-like superfamily Thimo_1691 IPR001789 Signal transduction response regulator, receiver domain Thimo_1692 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_1692 IPR021731 AMIN domain Thimo_1692 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain Thimo_1693 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE Thimo_1693 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1694 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr Thimo_1694 IPR029056 Ribokinase-like Thimo_1694 IPR004443 YjeF N-terminal domain Thimo_1694 IPR036652 YjeF N-terminal domain superfamily Thimo_1694 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase Thimo_1695 IPR018223 Argininosuccinate synthase, conserved site Thimo_1695 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1695 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body Thimo_1695 IPR001518 Argininosuccinate synthase Thimo_1695 IPR023434 Argininosuccinate synthase, type 1 subfamily Thimo_1697 IPR030678 Peptide/nickel binding protein, MppA-type Thimo_1697 IPR039424 Solute-binding protein family 5 Thimo_1697 IPR023765 Solute-binding protein family 5, conserved site Thimo_1697 IPR000914 Solute-binding protein family 5 domain Thimo_1698 IPR009078 Ferritin-like superfamily Thimo_1698 IPR033909 Ribonucleotide reductase small subunit Thimo_1698 IPR000358 Ribonucleotide reductase small subunit family Thimo_1698 IPR012348 Ribonucleotide reductase-like Thimo_1699 IPR029061 Thiamin diphosphate-binding fold Thimo_1699 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_1699 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_1699 IPR033248 Transketolase, C-terminal domain Thimo_1700 IPR029061 Thiamin diphosphate-binding fold Thimo_1700 IPR001017 Dehydrogenase, E1 component Thimo_1701 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1701 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1701 IPR000847 Transcription regulator HTH, LysR Thimo_1701 IPR005119 LysR, substrate-binding Thimo_1703 IPR018300 Aminotransferase, class IV, conserved site Thimo_1703 IPR005785 Branched-chain amino acid aminotransferase I Thimo_1703 IPR033939 Branched-chain aminotransferase Thimo_1703 IPR036038 Aminotransferase-like, PLP-dependent enzymes Thimo_1703 IPR001544 Aminotransferase class IV Thimo_1704 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase Thimo_1704 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain Thimo_1704 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme Thimo_1706 IPR019812 Hydrogenase assembly chaperone, conserved site Thimo_1706 IPR037254 HupF/HypC superfamily Thimo_1706 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_1708 IPR026530 Phosphoenolpyruvate synthase regulatory protein Thimo_1708 IPR005177 Bifunctional kinase-pyrophosphorylase Thimo_1711 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_1711 IPR041166 LapB, rubredoxin metal binding domain Thimo_1711 IPR013026 Tetratricopeptide repeat-containing domain Thimo_1711 IPR030865 Lipopolysaccharide assembly protein B Thimo_1711 IPR019734 Tetratricopeptide repeat Thimo_1712 IPR011060 Ribulose-phosphate binding barrel Thimo_1712 IPR018089 Orotidine 5'-phosphate decarboxylase, active site Thimo_1712 IPR014732 Orotidine 5'-phosphate decarboxylase Thimo_1712 IPR001754 Orotidine 5'-phosphate decarboxylase domain Thimo_1712 IPR013785 Aldolase-type TIM barrel Thimo_1713 IPR005835 Nucleotidyl transferase domain Thimo_1713 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type Thimo_1713 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1714 IPR028366 Phosphate transport system protein PhoU Thimo_1714 IPR026022 PhoU domain Thimo_1714 IPR038078 PhoU-like domain superfamily Thimo_1718 IPR001387 Cro/C1-type helix-turn-helix domain Thimo_1718 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Thimo_1718 IPR013430 Toxin-antitoxin system, antidote protein, HigA Thimo_1722 IPR013780 Glycosyl hydrolase, all-beta Thimo_1722 IPR011837 Glycogen debranching enzyme, GlgX type Thimo_1722 IPR017853 Glycoside hydrolase superfamily Thimo_1722 IPR004193 Glycoside hydrolase, family 13, N-terminal Thimo_1722 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_1722 IPR013783 Immunoglobulin-like fold Thimo_1722 IPR014756 Immunoglobulin E-set Thimo_1723 IPR003660 HAMP domain Thimo_1723 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1723 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1723 IPR005467 Histidine kinase domain Thimo_1723 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_1723 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_1723 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_1724 IPR039420 Transcriptional regulatory protein WalR-like Thimo_1724 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1724 IPR001789 Signal transduction response regulator, receiver domain Thimo_1724 IPR011006 CheY-like superfamily Thimo_1724 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_1731 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1731 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1731 IPR018335 Transcription regulator HTH, Crp-type, conserved site Thimo_1731 IPR018490 Cyclic nucleotide-binding-like Thimo_1731 IPR014710 RmlC-like jelly roll fold Thimo_1731 IPR012318 Crp-type HTH domain Thimo_1731 IPR000595 Cyclic nucleotide-binding domain Thimo_1733 IPR003848 Domain of unknown function DUF218 Thimo_1734 IPR037509 Phosphomethylpyrimidine synthase Thimo_1734 IPR025747 ThiC-associated domain Thimo_1734 IPR038521 ThiC/Bza superfamily Thimo_1734 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B Thimo_1735 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal Thimo_1735 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal Thimo_1735 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily Thimo_1735 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal Thimo_1735 IPR013785 Aldolase-type TIM barrel Thimo_1735 IPR004393 Nicotinate-nucleotide pyrophosphorylase Thimo_1735 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Thimo_1737 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily Thimo_1737 IPR002502 N-acetylmuramoyl-L-alanine amidase domain Thimo_1740 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily Thimo_1740 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Thimo_1740 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_1740 IPR001278 Arginine-tRNA ligase Thimo_1740 IPR005148 Arginyl tRNA synthetase N-terminal domain Thimo_1740 IPR035684 Arginyl-tRNA synthetase, catalytic core domain Thimo_1740 IPR008909 DALR anticodon binding Thimo_1741 IPR001110 Uncharacterised protein family UPF0012, conserved site Thimo_1741 IPR000182 GNAT domain Thimo_1741 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_1741 IPR003010 Carbon-nitrogen hydrolase Thimo_1741 IPR016181 Acyl-CoA N-acyltransferase Thimo_1742 IPR036291 NAD(P)-binding domain superfamily Thimo_1742 IPR020843 Polyketide synthase, enoylreductase domain Thimo_1742 IPR013149 Alcohol dehydrogenase, C-terminal Thimo_1742 IPR011032 GroES-like superfamily Thimo_1742 IPR013154 Alcohol dehydrogenase, N-terminal Thimo_1744 IPR008978 HSP20-like chaperone Thimo_1744 IPR002068 Alpha crystallin/Hsp20 domain Thimo_1745 IPR011042 Six-bladed beta-propeller, TolB-like Thimo_1745 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase Thimo_1745 IPR012938 Glucose/Sorbosone dehydrogenase Thimo_1760 IPR006059 Bacterial extracellular solute-binding protein Thimo_1760 IPR017637 Putative 2-aminoethylphosphonate binding protein, ABC transporter Thimo_1761 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_1761 IPR035906 MetI-like superfamily Thimo_1761 IPR017661 2-aminoethylphosphonate ABC transport system, membrane component PhnV Thimo_1762 IPR024765 TOBE-like domain Thimo_1762 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1762 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_1762 IPR017871 ABC transporter, conserved site Thimo_1762 IPR003439 ABC transporter-like Thimo_1762 IPR005666 Sulphate transport system permease protein 1 Thimo_1762 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal Thimo_1762 IPR003593 AAA+ ATPase domain Thimo_1767 IPR038488 Integrase, DNA-binding domain superfamily Thimo_1767 IPR025166 Integrase, DNA-binding domain Thimo_1767 IPR013762 Integrase-like, catalytic domain superfamily Thimo_1767 IPR011010 DNA breaking-rejoining enzyme, catalytic core Thimo_1767 IPR010998 Integrase/recombinase, N-terminal Thimo_1767 IPR002104 Integrase, catalytic domain Thimo_1779 IPR000330 SNF2-related, N-terminal domain Thimo_1779 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1779 IPR038718 SNF2-like, N-terminal domain superfamily Thimo_1779 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1779 IPR001650 Helicase, C-terminal Thimo_1779 IPR022138 Helicase SWF/SNF-related Thimo_1783 IPR003801 GTP cyclohydrolase FolE2/MptA Thimo_1783 IPR022838 GTP cyclohydrolase FolE2 Thimo_1784 IPR033749 Polyprenyl synthetase, conserved site Thimo_1784 IPR000092 Polyprenyl synthetase Thimo_1784 IPR008949 Isoprenoid synthase domain superfamily Thimo_1785 IPR037004 Exonuclease VII, small subunit superfamily Thimo_1785 IPR003761 Exonuclease VII, small subunit Thimo_1786 IPR002288 DNA gyrase B subunit, C-terminal Thimo_1786 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1786 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal Thimo_1786 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 Thimo_1786 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1786 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1786 IPR006171 TOPRIM domain Thimo_1786 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative Thimo_1786 IPR018522 DNA topoisomerase, type IIA, conserved site Thimo_1786 IPR001241 DNA topoisomerase, type IIA Thimo_1786 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1786 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Thimo_1788 IPR007208 Na(+)/H(+) antiporter subunit F-like Thimo_1790 IPR004775 Na(+)/H(+) antiporter subunit D1 Thimo_1790 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_1791 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Thimo_1791 IPR006673 Mnh complex subunit C1 Thimo_1792 IPR025383 Domain of unknown function DUF4040 Thimo_1792 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Thimo_1792 IPR005281 Monovalent cation:proton antiporter, subunit B Thimo_1792 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Thimo_1792 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_1792 IPR005663 Monovalent cation proton antiporter subunit A Thimo_1793 IPR002524 Cation efflux protein Thimo_1793 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Thimo_1793 IPR027469 Cation efflux transmembrane domain superfamily Thimo_1793 IPR023500 Zinc transporter ZitB Thimo_1795 IPR003373 Ferrous iron transport protein B Thimo_1795 IPR041069 FeoB, cytosolic helical domain Thimo_1795 IPR005225 Small GTP-binding protein domain Thimo_1795 IPR030389 FeoB-type guanine nucleotide-binding (G) domain Thimo_1795 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Thimo_1795 IPR011640 Ferrous iron transport protein B, C-terminal Thimo_1795 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1796 IPR038157 Ferrous iron transporter, core domain Thimo_1796 IPR008988 Transcriptional repressor, C-terminal Thimo_1796 IPR007167 Ferrous iron transporter FeoA domain Thimo_1798 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1798 IPR014369 Glycine/Sarcosine N-methyltransferase Thimo_1798 IPR041698 Methyltransferase domain 25 Thimo_1799 IPR013216 Methyltransferase type 11 Thimo_1799 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1800 IPR001474 GTP cyclohydrolase I Thimo_1800 IPR020602 GTP cyclohydrolase I domain Thimo_1800 IPR018234 GTP cyclohydrolase I, conserved site Thimo_1801 IPR017932 Glutamine amidotransferase type 2 domain Thimo_1801 IPR033738 Asparagine synthase, N-terminal domain Thimo_1801 IPR001962 Asparagine synthase Thimo_1801 IPR006426 Asparagine synthase, glutamine-hydrolyzing Thimo_1801 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_1803 IPR008007 Peptidase M42 Thimo_1803 IPR023367 Peptidase M42, domain 2 Thimo_1804 IPR010914 RsgA GTPase domain Thimo_1804 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1804 IPR004881 Ribosome biogenesis GTPase RsgA Thimo_1804 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain Thimo_1805 IPR022894 Oligoribonuclease Thimo_1805 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1805 IPR012337 Ribonuclease H-like superfamily Thimo_1805 IPR036397 Ribonuclease H superfamily Thimo_1806 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1806 IPR013542 Domain of unknown function DUF1730 Thimo_1806 IPR009051 Alpha-helical ferredoxin Thimo_1806 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1806 IPR004453 Epoxyqueuosine reductase QueG Thimo_1808 IPR005759 Endonuclease III Thimo_1808 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif Thimo_1808 IPR011257 DNA glycosylase Thimo_1808 IPR004036 Endonuclease III-like, conserved site-2 Thimo_1808 IPR004035 Endonuclease III, iron-sulphur binding site Thimo_1808 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Thimo_1808 IPR003265 HhH-GPD domain Thimo_1808 IPR000445 Helix-hairpin-helix motif Thimo_1809 IPR023696 Ureohydrolase domain superfamily Thimo_1809 IPR037138 Histone deacetylase domain superfamily Thimo_1809 IPR023801 Histone deacetylase domain Thimo_1809 IPR000286 Histone deacetylase family Thimo_1810 IPR000182 GNAT domain Thimo_1810 IPR036291 NAD(P)-binding domain superfamily Thimo_1810 IPR013815 ATP-grasp fold, subdomain 1 Thimo_1810 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Thimo_1810 IPR003781 CoA-binding Thimo_1810 IPR016102 Succinyl-CoA synthetase-like Thimo_1810 IPR016181 Acyl-CoA N-acyltransferase Thimo_1810 IPR011761 ATP-grasp fold Thimo_1811 IPR030459 Glycosyl hydrolases family 31, conserved site Thimo_1811 IPR030458 Glycosyl hydrolases family 31, active site Thimo_1811 IPR013780 Glycosyl hydrolase, all-beta Thimo_1811 IPR000322 Glycoside hydrolase family 31 Thimo_1811 IPR011013 Galactose mutarotase-like domain superfamily Thimo_1811 IPR033403 Domain of unknown function DUF5110 Thimo_1811 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 Thimo_1811 IPR025887 Glycoside hydrolase family 31, N-terminal domain Thimo_1811 IPR017853 Glycoside hydrolase superfamily Thimo_1812 IPR011991 ArsR-like helix-turn-helix domain Thimo_1812 IPR001845 HTH ArsR-type DNA-binding domain Thimo_1812 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1812 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1813 IPR036196 Phosphotyrosine protein phosphatase I superfamily Thimo_1813 IPR014064 Arsenate reductase ArsC Thimo_1813 IPR023485 Phosphotyrosine protein phosphatase I Thimo_1814 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 Thimo_1814 IPR004706 Arsenical-resistance protein Acr3 Thimo_1814 IPR038770 Sodium/solute symporter superfamily Thimo_1815 IPR005524 Predicted permease DUF318 Thimo_1819 IPR041471 UvrB, interaction domain Thimo_1819 IPR024759 UvrB, YAD/RRR-motif-containing domain Thimo_1819 IPR004807 UvrABC system, subunit B Thimo_1819 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1819 IPR001943 UVR domain Thimo_1819 IPR036876 UVR domain superfamily Thimo_1819 IPR006935 Helicase/UvrB, N-terminal Thimo_1819 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1819 IPR001650 Helicase, C-terminal Thimo_1822 IPR013325 RNA polymerase sigma factor, region 2 Thimo_1822 IPR014286 RNA polymerase sigma-70 RpoE type Thimo_1822 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 Thimo_1822 IPR007627 RNA polymerase sigma-70 region 2 Thimo_1822 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site Thimo_1822 IPR014284 RNA polymerase sigma-70 like domain Thimo_1822 IPR039425 RNA polymerase sigma-70 like Thimo_1822 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_1822 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1824 IPR005588 MucB/RseB Thimo_1824 IPR033434 MucB/RseB, N-terminal Thimo_1824 IPR033436 MucB/RseB, C-terminal Thimo_1824 IPR038484 MucB/RseB, C-terminal domain superfamily Thimo_1825 IPR026268 Protein RseC Thimo_1825 IPR007359 Positive regulator of sigma(E), RseC/MucC Thimo_1826 IPR001940 Peptidase S1C Thimo_1826 IPR009003 Peptidase S1, PA clan Thimo_1826 IPR011782 Peptidase S1C, Do Thimo_1826 IPR036034 PDZ superfamily Thimo_1826 IPR001478 PDZ domain Thimo_1827 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1827 IPR000795 Transcription factor, GTP-binding domain Thimo_1827 IPR005225 Small GTP-binding protein domain Thimo_1827 IPR031157 Tr-type G domain, conserved site Thimo_1827 IPR035647 EF-G domain III/V-like Thimo_1827 IPR000640 Elongation factor EFG, domain V-like Thimo_1827 IPR013842 GTP-binding protein LepA, C-terminal Thimo_1827 IPR038363 LepA, C-terminal domain superfamily Thimo_1827 IPR035654 Elongation factor 4, domain IV Thimo_1827 IPR006297 Elongation factor 4 Thimo_1828 IPR019533 Peptidase S26 Thimo_1828 IPR019756 Peptidase S26A, signal peptidase I, serine active site Thimo_1828 IPR036286 LexA/Signal peptidase-like superfamily Thimo_1828 IPR000223 Peptidase S26A, signal peptidase I Thimo_1828 IPR019758 Peptidase S26A, signal peptidase I, conserved site Thimo_1828 IPR019757 Peptidase S26A, signal peptidase I, lysine active site Thimo_1830 IPR036389 Ribonuclease III, endonuclease domain superfamily Thimo_1830 IPR014720 Double-stranded RNA-binding domain Thimo_1830 IPR011907 Ribonuclease III Thimo_1830 IPR000999 Ribonuclease III domain Thimo_1831 IPR005225 Small GTP-binding protein domain Thimo_1831 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1831 IPR009019 K homology domain superfamily, prokaryotic type Thimo_1831 IPR005662 GTP-binding protein Era Thimo_1831 IPR030388 Era-type guanine nucleotide-binding (G) domain Thimo_1831 IPR004044 K Homology domain, type 2 Thimo_1831 IPR015946 K homology domain-like, alpha/beta Thimo_1831 IPR006073 GTP binding domain Thimo_1832 IPR012340 Nucleic acid-binding, OB-fold Thimo_1832 IPR037278 ARFGAP/RecO-like zinc finger Thimo_1832 IPR022572 DNA replication/recombination mediator RecO, N-terminal Thimo_1832 IPR003717 Recombination protein O, RecO Thimo_1833 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1833 IPR005836 ADP-glucose pyrophosphorylase, conserved site Thimo_1833 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial Thimo_1833 IPR005835 Nucleotidyl transferase domain Thimo_1833 IPR011831 Glucose-1-phosphate adenylyltransferase Thimo_1833 IPR011004 Trimeric LpxA-like superfamily Thimo_1837 IPR004680 Citrate transporter-like domain Thimo_1839 IPR001015 Ferrochelatase Thimo_1839 IPR019772 Ferrochelatase, active site Thimo_1839 IPR033644 Ferrochelatase, C-terminal Thimo_1839 IPR033659 Ferrochelatase, N-terminal Thimo_1843 IPR006068 Cation-transporting P-type ATPase, C-terminal Thimo_1843 IPR023299 P-type ATPase, cytoplasmic domain N Thimo_1843 IPR023214 HAD superfamily Thimo_1843 IPR004014 Cation-transporting P-type ATPase, N-terminal Thimo_1843 IPR001757 P-type ATPase Thimo_1843 IPR036412 HAD-like superfamily Thimo_1843 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_1843 IPR018303 P-type ATPase, phosphorylation site Thimo_1843 IPR008250 P-type ATPase, A domain superfamily Thimo_1844 IPR005944 Proline iminopeptidase Thimo_1844 IPR029058 Alpha/Beta hydrolase fold Thimo_1844 IPR002410 Peptidase S33 Thimo_1844 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1845 IPR003732 D-aminoacyl-tRNA deacylase DTD Thimo_1845 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Thimo_1846 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1846 IPR000807 Imidazoleglycerol-phosphate dehydratase Thimo_1846 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site Thimo_1846 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily Thimo_1847 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA Thimo_1847 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Thimo_1847 IPR006062 Histidine biosynthesis Thimo_1847 IPR011060 Ribulose-phosphate binding barrel Thimo_1847 IPR013785 Aldolase-type TIM barrel Thimo_1847 IPR001252 Malate dehydrogenase, active site Thimo_1848 IPR026660 Phosphoribosyl-AMP cyclohydrolase Thimo_1848 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain Thimo_1848 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily Thimo_1849 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like Thimo_1849 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase Thimo_1850 IPR006312 Sec-independent protein translocase protein TatA/E Thimo_1850 IPR003369 Sec-independent protein translocase protein TatA/B/E Thimo_1851 IPR003369 Sec-independent protein translocase protein TatA/B/E Thimo_1851 IPR018448 Twin-arginine translocation protein TatB Thimo_1852 IPR002033 Sec-independent periplasmic protein translocase TatC Thimo_1852 IPR019820 Sec-independent periplasmic protein translocase, conserved site Thimo_1853 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1853 IPR005119 LysR, substrate-binding Thimo_1853 IPR000847 Transcription regulator HTH, LysR Thimo_1853 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1854 IPR003148 Regulator of K+ conductance, N-terminal Thimo_1854 IPR023941 Glutathione-regulated potassium-efflux system protein KefC Thimo_1854 IPR038770 Sodium/solute symporter superfamily Thimo_1854 IPR004771 K+/H+ exchanger Thimo_1854 IPR036291 NAD(P)-binding domain superfamily Thimo_1854 IPR006153 Cation/H+ exchanger Thimo_1854 IPR006036 Potassium uptake protein TrkA Thimo_1856 IPR008302 Uncharacterised conserved protein UCP016719 Thimo_1857 IPR013785 Aldolase-type TIM barrel Thimo_1857 IPR006062 Histidine biosynthesis Thimo_1857 IPR004651 Histidine biosynthesis, HisF Thimo_1857 IPR011060 Ribulose-phosphate binding barrel Thimo_1859 IPR000644 CBS domain Thimo_1859 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS Thimo_1859 IPR008915 Peptidase M50 Thimo_1861 IPR002818 DJ-1/PfpI Thimo_1861 IPR006286 Deglycase PfpI Thimo_1861 IPR029062 Class I glutamine amidotransferase-like Thimo_1864 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1864 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1864 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1864 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Thimo_1865 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Thimo_1865 IPR000755 D-alanyl-D-alanine dipeptidase Thimo_1868 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1868 IPR001036 Acriflavin resistance protein Thimo_1869 IPR006143 RND efflux pump, membrane fusion protein Thimo_1869 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1870 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1870 IPR002641 Patatin-like phospholipase domain Thimo_1870 IPR001423 Lysophospholipase patatin, conserved site Thimo_1872 IPR013216 Methyltransferase type 11 Thimo_1872 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1874 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Thimo_1874 IPR016174 Di-haem cytochrome, transmembrane Thimo_1876 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Thimo_1876 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site Thimo_1876 IPR036968 Enolpyruvate transferase domain superfamily Thimo_1876 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase Thimo_1876 IPR001986 Enolpyruvate transferase domain Thimo_1877 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1877 IPR011994 Cytidylate kinase domain Thimo_1877 IPR003136 Cytidylate kinase Thimo_1878 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 IPR022967 RNA-binding domain, S1 Thimo_1878 IPR003029 S1 domain Thimo_1878 IPR000110 Ribosomal protein S1 Thimo_1879 IPR000119 Histone-like DNA-binding protein Thimo_1879 IPR020816 Histone-like DNA-binding protein, conserved site Thimo_1879 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Thimo_1879 IPR005685 Integration host factor, beta subunit Thimo_1881 IPR036182 Copper chaperone PCuAC superfamily Thimo_1881 IPR007410 Copper chaperone PCuAC Thimo_1883 IPR000551 MerR-type HTH domain Thimo_1883 IPR037392 YfmP, Helix-Turn-Helix DNA binding domain Thimo_1883 IPR009061 Putative DNA-binding domain superfamily Thimo_1885 IPR000415 Nitroreductase-like Thimo_1885 IPR029479 Nitroreductase Thimo_1885 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE Thimo_1886 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1886 IPR011991 ArsR-like helix-turn-helix domain Thimo_1886 IPR001845 HTH ArsR-type DNA-binding domain Thimo_1886 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1887 IPR005225 Small GTP-binding protein domain Thimo_1887 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1887 IPR016484 GTP-binding protein EngA Thimo_1887 IPR006073 GTP binding domain Thimo_1887 IPR032859 GTPase Der, C-terminal KH-domain-like Thimo_1887 IPR015946 K homology domain-like, alpha/beta Thimo_1887 IPR031166 EngA-type guanine nucleotide-binding (G) domain Thimo_1888 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Thimo_1888 IPR002372 Pyrrolo-quinoline quinone repeat Thimo_1888 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 IPR017687 Outer membrane protein assembly factor BamB Thimo_1888 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Thimo_1889 IPR026039 Uncharacterised protein family UPF0070 Thimo_1889 IPR018704 Tetratricopeptide repeat-like domain Thimo_1889 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_1890 IPR004154 Anticodon-binding Thimo_1890 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit Thimo_1890 IPR036621 Anticodon-binding domain superfamily Thimo_1890 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_1890 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Thimo_1890 IPR033656 Histidyl-anticodon-binding Thimo_1890 IPR015807 Histidine-tRNA ligase Thimo_1891 IPR001387 Cro/C1-type helix-turn-helix domain Thimo_1891 IPR023690 Cytoskeleton protein RodZ Thimo_1891 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Thimo_1891 IPR025194 Domain of unknown function DUF4115 Thimo_1893 IPR027492 Dual-specificity RNA methyltransferase RlmN Thimo_1893 IPR040072 Methyltransferase (Class A) Thimo_1893 IPR013785 Aldolase-type TIM barrel Thimo_1893 IPR007197 Radical SAM Thimo_1893 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr Thimo_1894 IPR001564 Nucleoside diphosphate kinase Thimo_1894 IPR036850 Nucleoside diphosphate kinase-like domain superfamily Thimo_1894 IPR034907 Nucleoside diphosphate kinase-like domain Thimo_1895 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1895 IPR005490 L,D-transpeptidase catalytic domain Thimo_1896 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1896 IPR019614 S-adenosylmethionine-dependent methyltransferase Thimo_1896 IPR023542 rRNA large subunit methyltransferase I Thimo_1896 IPR041532 RlmI, PUA-like domain Thimo_1896 IPR036974 PUA domain superfamily Thimo_1896 IPR015947 PUA-like superfamily Thimo_1896 IPR002478 PUA domain Thimo_1899 IPR000845 Nucleoside phosphorylase domain Thimo_1899 IPR010044 Methylthioadenosine phosphorylase (MTAP) Thimo_1899 IPR035994 Nucleoside phosphorylase superfamily Thimo_1899 IPR018099 Purine phosphorylase, family 2, conserved site Thimo_1909 IPR013430 Toxin-antitoxin system, antidote protein, HigA Thimo_1909 IPR001387 Cro/C1-type helix-turn-helix domain Thimo_1909 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Thimo_1914 IPR010920 LSM domain superfamily Thimo_1914 IPR006685 Mechanosensitive ion channel MscS Thimo_1914 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_1914 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Thimo_1914 IPR006686 Mechanosensitive ion channel MscS, conserved site Thimo_1914 IPR011066 Mechanosensitive ion channel MscS, C-terminal Thimo_1916 IPR000811 Glycosyl transferase, family 35 Thimo_1916 IPR011833 Glycogen/starch/alpha-glucan phosphorylase Thimo_1916 IPR035090 Phosphorylase pyridoxal-phosphate attachment site Thimo_1917 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site Thimo_1917 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site Thimo_1917 IPR023962 Probable phosphoketolase Thimo_1917 IPR029061 Thiamin diphosphate-binding fold Thimo_1917 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_1917 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase Thimo_1917 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal Thimo_1917 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal Thimo_1919 IPR016164 FAD-linked oxidase-like, C-terminal Thimo_1919 IPR006094 FAD linked oxidase, N-terminal Thimo_1919 IPR004490 Glycolate oxidase subunit GlcD Thimo_1919 IPR004113 FAD-linked oxidase, C-terminal Thimo_1919 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_1919 IPR016166 FAD-binding domain, PCMH-type Thimo_1919 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_1920 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_1920 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_1920 IPR006094 FAD linked oxidase, N-terminal Thimo_1920 IPR016166 FAD-binding domain, PCMH-type Thimo_1920 IPR016164 FAD-linked oxidase-like, C-terminal Thimo_1921 IPR009051 Alpha-helical ferredoxin Thimo_1921 IPR012257 Glycolate oxidase, iron-sulphur subunit Thimo_1921 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1921 IPR004017 Cysteine-rich domain Thimo_1921 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1922 IPR028622 ATP-dependent RNA helicase RhlE Thimo_1922 IPR011545 DEAD/DEAH box helicase domain Thimo_1922 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1922 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Thimo_1922 IPR001650 Helicase, C-terminal Thimo_1922 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1922 IPR014014 RNA helicase, DEAD-box type, Q motif Thimo_1923 IPR000504 RNA recognition motif domain Thimo_1923 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_1923 IPR035979 RNA-binding domain superfamily Thimo_1924 IPR004154 Anticodon-binding Thimo_1924 IPR002316 Proline-tRNA ligase, class IIa Thimo_1924 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_1924 IPR033730 Prokaryote proline-tRNA ligase core domain Thimo_1924 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 Thimo_1924 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type Thimo_1924 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Thimo_1924 IPR036621 Anticodon-binding domain superfamily Thimo_1924 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Thimo_1924 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily Thimo_1925 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Thimo_1925 IPR029069 HotDog domain superfamily Thimo_1925 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA Thimo_1926 IPR005170 Transporter-associated domain Thimo_1926 IPR000644 CBS domain Thimo_1926 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_1926 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_1926 IPR002550 CNNM, transmembrane domain Thimo_1929 IPR008526 Inner membrane protein YedI Thimo_1930 IPR018047 Ammonium transporter, conserved site Thimo_1930 IPR024041 Ammonium transporter AmtB-like domain Thimo_1930 IPR029020 Ammonium/urea transporter Thimo_1930 IPR001905 Ammonium transporter Thimo_1931 IPR001036 Acriflavin resistance protein Thimo_1931 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1932 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1932 IPR006143 RND efflux pump, membrane fusion protein Thimo_1933 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1933 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Thimo_1933 IPR002505 Phosphate acetyl/butaryl transferase Thimo_1933 IPR042112 Phosphate acetyltransferase, domain 2 Thimo_1933 IPR042113 Phosphate acetyltransferase, domain 1 Thimo_1933 IPR016475 Phosphate acetyltransferase, bacteria Thimo_1933 IPR010766 DRTGG Thimo_1933 IPR004614 Phosphate acetyltransferase Thimo_1934 IPR023865 Aliphatic acid kinase, short-chain, conserved site Thimo_1934 IPR004372 Acetate/propionate kinase Thimo_1934 IPR000890 Aliphatic acid kinase, short-chain Thimo_1936 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_1936 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_1936 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_1936 IPR000192 Aminotransferase class V domain Thimo_1936 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1939 IPR001296 Glycosyl transferase, family 1 Thimo_1939 IPR017814 Mycothiol biosynthesis protein, MshA Thimo_1939 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1940 IPR022835 Chaperone modulatory protein CbpM Thimo_1941 IPR008971 HSP40/DnaJ peptide-binding Thimo_1941 IPR018253 DnaJ domain, conserved site Thimo_1941 IPR001623 DnaJ domain Thimo_1941 IPR036869 Chaperone J-domain superfamily Thimo_1941 IPR002939 Chaperone DnaJ, C-terminal Thimo_1941 IPR023859 DNA-binding protein, curved-DNA Thimo_1942 IPR003593 AAA+ ATPase domain Thimo_1942 IPR041569 AAA ATPase, AAA+ lid domain Thimo_1942 IPR003959 ATPase, AAA-type, core Thimo_1942 IPR003960 ATPase, AAA-type, conserved site Thimo_1942 IPR011546 Peptidase M41, FtsH extracellular Thimo_1942 IPR005936 Peptidase, FtsH Thimo_1942 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1942 IPR037219 Peptidase M41-like Thimo_1942 IPR000642 Peptidase M41 Thimo_1944 IPR011908 Lipopolysaccharide heptosyltransferase I Thimo_1944 IPR002201 Glycosyl transferase, family 9 Thimo_1945 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1945 IPR001296 Glycosyl transferase, family 1 Thimo_1945 IPR011875 Alpha-maltose-1-phosphate synthase Thimo_1946 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily Thimo_1946 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal Thimo_1946 IPR039901 3-deoxy-D-manno-octulosonic acid transferase Thimo_1948 IPR002650 Sulphate adenylyltransferase Thimo_1948 IPR025980 ATP-sulfurylase PUA-like domain Thimo_1948 IPR015947 PUA-like superfamily Thimo_1948 IPR024951 Sulphate adenylyltransferase catalytic domain Thimo_1948 IPR020792 Sulphate adenylyltransferase, prokaryotic-type Thimo_1948 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1951 IPR023346 Lysozyme-like domain superfamily Thimo_1951 IPR008258 Transglycosylase SLT domain 1 Thimo_1951 IPR000189 Prokaryotic transglycosylase, active site Thimo_1952 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_1952 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Thimo_1952 IPR010275 Protein of unknown function DUF882 Thimo_1953 IPR012340 Nucleic acid-binding, OB-fold Thimo_1953 IPR001900 Ribonuclease II/R Thimo_1954 IPR006222 Aminomethyltransferase, folate-binding domain Thimo_1954 IPR017703 YgfZ/GcvT conserved site Thimo_1954 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Thimo_1954 IPR023758 tRNA-modifying protein YgfZ Thimo_1955 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Thimo_1955 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Thimo_1955 IPR002313 Lysine-tRNA ligase, class II Thimo_1955 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_1955 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal Thimo_1955 IPR012340 Nucleic acid-binding, OB-fold Thimo_1957 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_1957 IPR006070 YrdC-like domain Thimo_1957 IPR011125 Zinc finger, HypF-type Thimo_1957 IPR036046 Acylphosphatase-like domain superfamily Thimo_1957 IPR017968 Acylphosphatase, conserved site Thimo_1957 IPR001792 Acylphosphatase-like domain Thimo_1957 IPR041440 HypF, Kae1-like domain Thimo_1957 IPR004421 Carbamoyltransferase, HypF-type Thimo_1958 IPR035985 Ubiquitin-activating enzyme Thimo_1958 IPR000594 THIF-type NAD/FAD binding fold Thimo_1959 IPR018228 Deoxyribonuclease, TatD-related, conserved site Thimo_1959 IPR015991 Uncharacterised hydrolase TatD-type Thimo_1959 IPR001130 TatD family Thimo_1959 IPR032466 Metal-dependent hydrolase Thimo_1961 IPR018636 Protein of unknown function DUF2058 Thimo_1964 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_1964 IPR001279 Metallo-beta-lactamase Thimo_1966 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1966 IPR006015 Universal stress protein A family Thimo_1966 IPR006016 UspA Thimo_1967 IPR005482 Biotin carboxylase, C-terminal Thimo_1967 IPR011764 Biotin carboxylation domain Thimo_1967 IPR011761 ATP-grasp fold Thimo_1967 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase Thimo_1967 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Thimo_1967 IPR016185 Pre-ATP-grasp domain superfamily Thimo_1967 IPR011054 Rudiment single hybrid motif Thimo_1967 IPR005481 Biotin carboxylase-like, N-terminal domain Thimo_1968 IPR000891 Pyruvate carboxyltransferase Thimo_1968 IPR005776 Oxaloacetate decarboxylase, alpha subunit Thimo_1968 IPR003379 Carboxylase, conserved domain Thimo_1968 IPR000089 Biotin/lipoyl attachment Thimo_1968 IPR001882 Biotin-binding site Thimo_1968 IPR011053 Single hybrid motif Thimo_1968 IPR013785 Aldolase-type TIM barrel Thimo_1970 IPR036873 Rhodanese-like domain superfamily Thimo_1970 IPR001763 Rhodanese-like domain Thimo_1970 IPR021309 Protein of unknown function DUF2892 Thimo_1972 IPR003010 Carbon-nitrogen hydrolase Thimo_1972 IPR001110 Uncharacterised protein family UPF0012, conserved site Thimo_1972 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_1973 IPR023380 DsbB-like superfamily Thimo_1973 IPR003752 Disulphide bond formation protein DsbB/BdbC Thimo_1973 IPR022920 Disulphide bond formation protein DsbB Thimo_1974 IPR008258 Transglycosylase SLT domain 1 Thimo_1974 IPR000189 Prokaryotic transglycosylase, active site Thimo_1974 IPR016047 Peptidase M23 Thimo_1974 IPR023346 Lysozyme-like domain superfamily Thimo_1974 IPR011055 Duplicated hybrid motif Thimo_1974 IPR010090 Phage tail tape measure protein Thimo_1975 IPR006183 6-phosphogluconate dehydrogenase Thimo_1975 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_1975 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Thimo_1975 IPR006114 6-phosphogluconate dehydrogenase, C-terminal Thimo_1975 IPR006184 6-phosphogluconate-binding site Thimo_1975 IPR036291 NAD(P)-binding domain superfamily Thimo_1975 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating Thimo_1975 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Thimo_1976 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_1976 IPR001296 Glycosyl transferase, family 1 Thimo_1979 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1979 IPR001036 Acriflavin resistance protein Thimo_1979 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Thimo_1980 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1980 IPR006143 RND efflux pump, membrane fusion protein Thimo_1984 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1984 IPR013670 EcoEI R protein C-terminal domain Thimo_1984 IPR006935 Helicase/UvrB, N-terminal Thimo_1984 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1984 IPR001650 Helicase, C-terminal Thimo_1984 IPR029464 Type I restriction enzyme R protein, N-terminal domain Thimo_1985 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1985 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Thimo_1985 IPR003356 DNA methylase, adenine-specific Thimo_1985 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_1985 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Thimo_1990 IPR000055 Restriction endonuclease, type I, HsdS Thimo_1995 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1995 IPR015854 ABC transporter, lipoprotein release, LolD Thimo_1995 IPR003593 AAA+ ATPase domain Thimo_1995 IPR003439 ABC transporter-like Thimo_1995 IPR017871 ABC transporter, conserved site Thimo_1996 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_1996 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1996 IPR004400 Urease accessory protein UreG Thimo_1999 IPR036707 Cell division topological specificity factor MinE superfamily Thimo_1999 IPR005527 Cell division topological specificity factor MinE Thimo_2000 IPR010223 ATP binding protein MinD, bacterial-type Thimo_2000 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_2000 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2000 IPR025501 ATP binding protein MinD Thimo_2001 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily Thimo_2001 IPR005526 Septum formation inhibitor MinC, C-terminal Thimo_2001 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily Thimo_2001 IPR007874 Septum formation inhibitor MinC, N-terminal Thimo_2001 IPR013033 Septum formation inhibitor MinC Thimo_2001 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal Thimo_2002 IPR036265 HIT-like superfamily Thimo_2002 IPR011146 HIT-like domain Thimo_2002 IPR001310 Histidine triad (HIT) protein Thimo_2002 IPR019808 Histidine triad, conserved site Thimo_2003 IPR034137 RecR, TOPRIM domain Thimo_2003 IPR006171 TOPRIM domain Thimo_2003 IPR015967 Recombination protein RecR, conserved site Thimo_2003 IPR023627 Recombination protein RecR Thimo_2003 IPR000093 DNA recombination protein RecR Thimo_2003 IPR023628 Recombination protein RecR, C4-type zinc finger Thimo_2004 IPR004401 Nucleoid-associated protein YbaB/EbfC family Thimo_2004 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Thimo_2006 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2006 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Thimo_2006 IPR005288 L-aspartate oxidase Thimo_2006 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Thimo_2006 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Thimo_2006 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Thimo_2007 IPR022374 Energy-dependent translational throttle protein EttA Thimo_2007 IPR017871 ABC transporter, conserved site Thimo_2007 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2007 IPR003439 ABC transporter-like Thimo_2007 IPR003593 AAA+ ATPase domain Thimo_2007 IPR032781 ABC-transporter extension domain Thimo_2008 IPR001633 EAL domain Thimo_2008 IPR035919 EAL domain superfamily Thimo_2008 IPR029787 Nucleotide cyclase Thimo_2008 IPR000014 PAS domain Thimo_2008 IPR035965 PAS domain superfamily Thimo_2008 IPR013656 PAS fold-4 Thimo_2008 IPR000160 GGDEF domain Thimo_2011 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2011 IPR002477 Peptidoglycan binding-like Thimo_2011 IPR036365 PGBD-like superfamily Thimo_2011 IPR036366 PGBD superfamily Thimo_2011 IPR003593 AAA+ ATPase domain Thimo_2012 IPR038614 Glycerate kinase, N-terminal domain superfamily Thimo_2012 IPR007835 MOFRL domain Thimo_2012 IPR037035 Glycerate kinase-like, C-terminal domain superfamily Thimo_2012 IPR025286 MOFRL-associated domain Thimo_2012 IPR039760 MOFRL domain-containing protein Thimo_2015 IPR002549 Transmembrane protein TqsA-like Thimo_2016 IPR000160 GGDEF domain Thimo_2016 IPR013656 PAS fold-4 Thimo_2016 IPR035965 PAS domain superfamily Thimo_2016 IPR035919 EAL domain superfamily Thimo_2016 IPR000014 PAS domain Thimo_2016 IPR029787 Nucleotide cyclase Thimo_2016 IPR001633 EAL domain Thimo_2017 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria Thimo_2017 IPR011650 Peptidase M20, dimerisation domain Thimo_2017 IPR036264 Bacterial exopeptidase dimerisation domain Thimo_2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Thimo_2017 IPR002933 Peptidase M20 Thimo_2018 IPR007527 Zinc finger, SWIM-type Thimo_2019 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2019 IPR001650 Helicase, C-terminal Thimo_2019 IPR038718 SNF2-like, N-terminal domain superfamily Thimo_2019 IPR000330 SNF2-related, N-terminal domain Thimo_2019 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2019 IPR022138 Helicase SWF/SNF-related Thimo_2023 IPR002559 Transposase, IS4-like Thimo_2023 IPR008490 Transposase InsH, N-terminal Thimo_2026 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2026 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2026 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2026 IPR000524 Transcription regulator HTH, GntR Thimo_2026 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2026 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2026 IPR004839 Aminotransferase, class I/classII Thimo_2027 IPR014369 Glycine/Sarcosine N-methyltransferase Thimo_2027 IPR041698 Methyltransferase domain 25 Thimo_2027 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2028 IPR025948 HTH-like domain Thimo_2028 IPR001584 Integrase, catalytic core Thimo_2028 IPR036397 Ribonuclease H superfamily Thimo_2028 IPR012337 Ribonuclease H-like superfamily Thimo_2029 IPR002514 Transposase IS3/IS911family Thimo_2029 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2029 IPR009057 Homeobox-like domain superfamily Thimo_2036 IPR036766 Fe(II) trafficking protein YggX superfamily Thimo_2036 IPR007457 Fe(II) trafficking protein YggX Thimo_2037 IPR003265 HhH-GPD domain Thimo_2037 IPR000445 Helix-hairpin-helix motif Thimo_2037 IPR029119 MutY, C-terminal Thimo_2037 IPR004036 Endonuclease III-like, conserved site-2 Thimo_2037 IPR011257 DNA glycosylase Thimo_2037 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_2037 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif Thimo_2037 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Thimo_2037 IPR004035 Endonuclease III, iron-sulphur binding site Thimo_2037 IPR005760 A/G-specific adenine glycosylase MutY Thimo_2040 IPR042099 AMP-dependent synthetase-like superfamily Thimo_2040 IPR000873 AMP-dependent synthetase/ligase Thimo_2040 IPR020845 AMP-binding, conserved site Thimo_2041 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_2041 IPR003749 Sulfur carrier ThiS/MoaD-like Thimo_2041 IPR013785 Aldolase-type TIM barrel Thimo_2041 IPR012675 Beta-grasp domain superfamily Thimo_2041 IPR008867 Thiazole synthase Thimo_2041 IPR010035 ThiS, thiamine-biosynthesis Thimo_2041 IPR033983 Thiazole synthase ThiG Thimo_2042 IPR033983 Thiazole synthase ThiG Thimo_2042 IPR008867 Thiazole synthase Thimo_2042 IPR013785 Aldolase-type TIM barrel Thimo_2043 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type Thimo_2043 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2044 IPR015853 ABC transporter, ferric cation import, FbpC Thimo_2044 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_2044 IPR017871 ABC transporter, conserved site Thimo_2044 IPR003593 AAA+ ATPase domain Thimo_2044 IPR013611 Transport-associated OB, type 2 Thimo_2044 IPR003439 ABC transporter-like Thimo_2044 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2045 IPR005226 UPF0014 family Thimo_2046 IPR011009 Protein kinase-like domain superfamily Thimo_2046 IPR032882 SrkA/RdoA protein kinase Thimo_2046 IPR002575 Aminoglycoside phosphotransferase Thimo_2049 IPR002024 Bacterioferritin Thimo_2049 IPR012347 Ferritin-like Thimo_2049 IPR009040 Ferritin-like diiron domain Thimo_2049 IPR009078 Ferritin-like superfamily Thimo_2049 IPR008331 Ferritin/DPS protein domain Thimo_2050 IPR002024 Bacterioferritin Thimo_2050 IPR012347 Ferritin-like Thimo_2050 IPR009040 Ferritin-like diiron domain Thimo_2050 IPR009078 Ferritin-like superfamily Thimo_2050 IPR008331 Ferritin/DPS protein domain Thimo_2055 IPR005330 MHYT domain Thimo_2055 IPR000160 GGDEF domain Thimo_2055 IPR001633 EAL domain Thimo_2055 IPR035919 EAL domain superfamily Thimo_2055 IPR029787 Nucleotide cyclase Thimo_2056 IPR006143 RND efflux pump, membrane fusion protein Thimo_2056 IPR022824 Multidrug resistance protein MdtA Thimo_2056 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Thimo_2057 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Thimo_2057 IPR001036 Acriflavin resistance protein Thimo_2057 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2058 IPR022924 Cardiolipin synthase Thimo_2058 IPR030840 Cardiolipin synthase A Thimo_2058 IPR001736 Phospholipase D/Transphosphatidylase Thimo_2058 IPR025202 Phospholipase D-like domain Thimo_2058 IPR027379 Cardiolipin synthase N-terminal Thimo_2059 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_2059 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2059 IPR023753 FAD/NAD(P)-binding domain Thimo_2059 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Thimo_2059 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Thimo_2059 IPR022962 Soluble pyridine nucleotide transhydrogenase Thimo_2062 IPR011006 CheY-like superfamily Thimo_2062 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_2062 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_2062 IPR001789 Signal transduction response regulator, receiver domain Thimo_2062 IPR039420 Transcriptional regulatory protein WalR-like Thimo_2062 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2063 IPR029151 Periplasmic sensor-like domain superfamily Thimo_2063 IPR003660 HAMP domain Thimo_2063 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2063 IPR005467 Histidine kinase domain Thimo_2063 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_2063 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_2063 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_2063 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2064 IPR010364 Uncharacterised protein family, inner membrane CreD Thimo_2070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_2070 IPR035906 MetI-like superfamily Thimo_2071 IPR035906 MetI-like superfamily Thimo_2071 IPR014157 Nickel ABC transporter, permease subunit NikC Thimo_2071 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_2072 IPR001764 Glycoside hydrolase, family 3, N-terminal Thimo_2072 IPR022956 Beta-hexosaminidase, bacterial Thimo_2072 IPR017853 Glycoside hydrolase superfamily Thimo_2072 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily Thimo_2076 IPR042159 Flavin-trafficking protein ApbE Thimo_2076 IPR003374 ApbE-like superfamily Thimo_2076 IPR024932 Flavin transferase ApbE Thimo_2077 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F Thimo_2077 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_2077 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain Thimo_2077 IPR002942 RNA-binding S4 domain Thimo_2077 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site Thimo_2077 IPR036986 RNA-binding S4 domain superfamily Thimo_2077 IPR006145 Pseudouridine synthase, RsuA/RluA Thimo_2078 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2078 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 Thimo_2078 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_2078 IPR033910 Glutamyl-tRNA synthetase Thimo_2078 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Thimo_2078 IPR000924 Glutamyl/glutaminyl-tRNA synthetase Thimo_2078 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding Thimo_2078 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial Thimo_2081 IPR022861 Glutamine-tRNA ligase, bacterial Thimo_2081 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_2081 IPR004514 Glutamine-tRNA synthetase Thimo_2081 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily Thimo_2081 IPR000924 Glutamyl/glutaminyl-tRNA synthetase Thimo_2081 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Thimo_2081 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain Thimo_2081 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Thimo_2081 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily Thimo_2081 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2082 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2082 IPR041703 Transcription termination factor Rho, ATP binding domain Thimo_2082 IPR012340 Nucleic acid-binding, OB-fold Thimo_2082 IPR011112 Rho termination factor, N-terminal Thimo_2082 IPR011113 Rho termination factor, RNA-binding domain Thimo_2082 IPR004665 Transcription termination factor Rho Thimo_2082 IPR036269 Rho termination factor, N-terminal domain superfamily Thimo_2082 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_2082 IPR011129 Cold shock domain Thimo_2082 IPR003593 AAA+ ATPase domain Thimo_2083 IPR005746 Thioredoxin Thimo_2083 IPR013766 Thioredoxin domain Thimo_2083 IPR036249 Thioredoxin-like superfamily Thimo_2084 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Thimo_2084 IPR011545 DEAD/DEAH box helicase domain Thimo_2084 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2084 IPR023554 ATP-dependent RNA helicase RhlB type Thimo_2084 IPR001650 Helicase, C-terminal Thimo_2084 IPR014014 RNA helicase, DEAD-box type, Q motif Thimo_2084 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2085 IPR006439 HAD hydrolase, subfamily IA Thimo_2085 IPR041492 Haloacid dehalogenase-like hydrolase Thimo_2085 IPR023214 HAD superfamily Thimo_2085 IPR036412 HAD-like superfamily Thimo_2086 IPR000086 NUDIX hydrolase domain Thimo_2086 IPR020084 NUDIX hydrolase, conserved site Thimo_2086 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_2087 IPR023861 Chloride channel, ClcA Thimo_2087 IPR014743 Chloride channel, core Thimo_2087 IPR001807 Chloride channel, voltage gated Thimo_2089 IPR013785 Aldolase-type TIM barrel Thimo_2089 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal Thimo_2091 IPR006196 RNA-binding domain, S1, IF1 type Thimo_2091 IPR004368 Translation initiation factor IF-1 Thimo_2091 IPR022967 RNA-binding domain, S1 Thimo_2091 IPR012340 Nucleic acid-binding, OB-fold Thimo_2092 IPR003593 AAA+ ATPase domain Thimo_2092 IPR003959 ATPase, AAA-type, core Thimo_2092 IPR019489 Clp ATPase, C-terminal Thimo_2092 IPR036628 Clp, N-terminal domain superfamily Thimo_2092 IPR004176 Clp, N-terminal Thimo_2092 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA Thimo_2092 IPR041546 ClpA/ClpB, AAA lid domain Thimo_2092 IPR018368 ClpA/B, conserved site 1 Thimo_2092 IPR028299 ClpA/B, conserved site 2 Thimo_2092 IPR001270 ClpA/B family Thimo_2092 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2093 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Thimo_2093 IPR003769 Adaptor protein ClpS, core Thimo_2093 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Thimo_2094 IPR011129 Cold shock domain Thimo_2094 IPR002059 Cold-shock protein, DNA-binding Thimo_2094 IPR012156 Cold shock, CspA Thimo_2094 IPR012340 Nucleic acid-binding, OB-fold Thimo_2094 IPR019844 Cold-shock (CSD) domain Thimo_2095 IPR004506 tRNA-specific 2-thiouridylase Thimo_2095 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2095 IPR023382 Adenine nucleotide alpha hydrolase-like domains Thimo_2096 IPR035932 HflD-like superfamily Thimo_2096 IPR007451 High frequency lysogenization protein HflD Thimo_2098 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB Thimo_2098 IPR000905 Gcp-like domain Thimo_2099 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type Thimo_2099 IPR006555 ATP-dependent helicase, C-terminal Thimo_2099 IPR010614 DEAD2 Thimo_2099 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2099 IPR001650 Helicase, C-terminal Thimo_2099 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2101 IPR036950 Penicillin binding protein transglycosylase domain Thimo_2101 IPR011813 Penicillin-binding protein 1B Thimo_2101 IPR023346 Lysozyme-like domain superfamily Thimo_2101 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2101 IPR001460 Penicillin-binding protein, transpeptidase Thimo_2101 IPR001264 Glycosyl transferase, family 51 Thimo_2101 IPR028166 Bifunctional transglycosylase second domain Thimo_2102 IPR013525 ABC-2 type transporter Thimo_2102 IPR000412 ABC-2 transporter Thimo_2103 IPR003439 ABC transporter-like Thimo_2103 IPR017871 ABC transporter, conserved site Thimo_2103 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2103 IPR003593 AAA+ ATPase domain Thimo_2109 IPR017261 DNA mismatch repair protein MutS/MSH Thimo_2109 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2109 IPR000432 DNA mismatch repair protein MutS, C-terminal Thimo_2109 IPR036678 MutS, connector domain superfamily Thimo_2109 IPR007861 DNA mismatch repair protein MutS, clamp Thimo_2109 IPR007696 DNA mismatch repair protein MutS, core Thimo_2109 IPR007695 DNA mismatch repair protein MutS-like, N-terminal Thimo_2109 IPR016151 DNA mismatch repair protein MutS, N-terminal Thimo_2109 IPR005748 DNA mismatch repair protein MutS Thimo_2109 IPR007860 DNA mismatch repair protein MutS, connector domain Thimo_2109 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Thimo_2110 IPR013216 Methyltransferase type 11 Thimo_2110 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC Thimo_2110 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2110 IPR029058 Alpha/Beta hydrolase fold Thimo_2110 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2111 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_2111 IPR006653 Tryptophan synthase, beta chain, conserved site Thimo_2111 IPR006654 Tryptophan synthase, beta chain Thimo_2111 IPR023026 Tryptophan synthase beta chain/beta chain-like Thimo_2111 IPR006316 Tryptophan synthase, beta chain-like Thimo_2111 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_2112 IPR006319 Phosphoenolpyruvate synthase Thimo_2112 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding Thimo_2112 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_2112 IPR018274 PEP-utilising enzyme, active site Thimo_2112 IPR008279 PEP-utilising enzyme, mobile domain Thimo_2112 IPR023151 PEP-utilising enzyme, conserved site Thimo_2112 IPR040442 Pyruvate kinase-like domain superfamily Thimo_2112 IPR013815 ATP-grasp fold, subdomain 1 Thimo_2112 IPR036637 Phosphohistidine domain superfamily Thimo_2112 IPR000121 PEP-utilising enzyme, C-terminal Thimo_2119 IPR011737 Conserved hypothetical protein CHP02206, TP0381 Thimo_2124 IPR010292 Uncharacterised protein family CreA Thimo_2128 IPR038649 Exonuclease I, SH3-like domain superfamily Thimo_2128 IPR023607 Exodeoxyribonuclease I Thimo_2128 IPR013620 Exodeoxyribonuclease I, C-terminal Thimo_2128 IPR012337 Ribonuclease H-like superfamily Thimo_2128 IPR036397 Ribonuclease H superfamily Thimo_2128 IPR034747 Exonuclease I, SH3-like domain Thimo_2128 IPR034748 Exonuclease I, C-terminal alpha-helical domain Thimo_2128 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_2129 IPR008991 Translation protein SH3-like domain superfamily Thimo_2129 IPR018257 Ribosomal protein L19, conserved site Thimo_2129 IPR001857 Ribosomal protein L19 Thimo_2129 IPR038657 Ribosomal protein L19 superfamily Thimo_2130 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain Thimo_2130 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal Thimo_2130 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria Thimo_2130 IPR029028 Alpha/beta knot methyltransferases Thimo_2130 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2131 IPR011961 16S rRNA processing protein RimM Thimo_2131 IPR011033 PRC-barrel-like superfamily Thimo_2131 IPR027275 PRC-barrel domain Thimo_2131 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2131 IPR036976 RimM, N-terminal domain superfamily Thimo_2131 IPR002676 RimM, N-terminal Thimo_2132 IPR000307 Ribosomal protein S16 Thimo_2132 IPR020592 Ribosomal protein S16, conserved site Thimo_2132 IPR023803 Ribosomal protein S16 domain superfamily Thimo_2133 IPR006669 Magnesium transporter MgtE Thimo_2133 IPR006667 SLC41 divalent cation transporters, integral membrane domain Thimo_2133 IPR038076 MgtE, N-terminal domain superfamily Thimo_2133 IPR006668 Magnesium transporter, MgtE intracellular domain Thimo_2133 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily Thimo_2133 IPR000644 CBS domain Thimo_2133 IPR038048 Magnesium transporter MgtE, transmembrane domain Thimo_2134 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2134 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Thimo_2134 IPR014014 RNA helicase, DEAD-box type, Q motif Thimo_2134 IPR001650 Helicase, C-terminal Thimo_2134 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Thimo_2134 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2134 IPR028618 ATP-dependent RNA helicase DeaD Thimo_2134 IPR011545 DEAD/DEAH box helicase domain Thimo_2134 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_2134 IPR034415 CsdA, RNA recognition motif Thimo_2135 IPR003791 Protein of unknown function UPF0178 Thimo_2136 IPR000170 High potential iron-sulphur protein Thimo_2136 IPR036369 High potential iron-sulphur protein superfamily Thimo_2142 IPR003439 ABC transporter-like Thimo_2142 IPR004602 UvrABC system subunit A Thimo_2142 IPR041552 UvrA DNA-binding domain Thimo_2142 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2142 IPR041102 UvrA, interaction domain Thimo_2142 IPR017871 ABC transporter, conserved site Thimo_2142 IPR003593 AAA+ ATPase domain Thimo_2145 IPR000700 PAS-associated, C-terminal Thimo_2145 IPR000014 PAS domain Thimo_2145 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_2145 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_2145 IPR005467 Histidine kinase domain Thimo_2145 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2145 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2145 IPR035965 PAS domain superfamily Thimo_2145 IPR013767 PAS fold Thimo_2145 IPR029151 Periplasmic sensor-like domain superfamily Thimo_2145 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_2145 IPR003660 HAMP domain Thimo_2146 IPR039420 Transcriptional regulatory protein WalR-like Thimo_2146 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2146 IPR001789 Signal transduction response regulator, receiver domain Thimo_2146 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_2146 IPR011006 CheY-like superfamily Thimo_2146 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_2155 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2155 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Thimo_2155 IPR017871 ABC transporter, conserved site Thimo_2155 IPR003439 ABC transporter-like Thimo_2155 IPR003593 AAA+ ATPase domain Thimo_2156 IPR003439 ABC transporter-like Thimo_2156 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Thimo_2156 IPR017871 ABC transporter, conserved site Thimo_2156 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2156 IPR003593 AAA+ ATPase domain Thimo_2158 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_2158 IPR035906 MetI-like superfamily Thimo_2160 IPR011547 SLC26A/SulP transporter domain Thimo_2160 IPR036513 STAS domain superfamily Thimo_2160 IPR001902 SLC26A/SulP transporter Thimo_2160 IPR002645 STAS domain Thimo_2161 IPR036737 OmpA-like domain superfamily Thimo_2161 IPR039001 Peptidoglycan-associated lipoprotein Thimo_2161 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal Thimo_2161 IPR006690 Outer membrane protein, OmpA-like, conserved site Thimo_2161 IPR006665 OmpA-like domain Thimo_2161 IPR006664 Outer membrane protein, bacterial Thimo_2162 IPR005144 ATP-cone domain Thimo_2162 IPR000788 Ribonucleotide reductase large subunit, C-terminal Thimo_2162 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent Thimo_2162 IPR013509 Ribonucleotide reductase large subunit, N-terminal Thimo_2162 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Thimo_2164 IPR018212 Sodium/solute symporter, conserved site Thimo_2164 IPR001734 Sodium/solute symporter Thimo_2164 IPR038377 Sodium/glucose symporter superfamily Thimo_2164 IPR011851 Sodium/proline symporter Thimo_2165 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_2165 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_2165 IPR011006 CheY-like superfamily Thimo_2165 IPR001789 Signal transduction response regulator, receiver domain Thimo_2165 IPR009057 Homeobox-like domain superfamily Thimo_2165 IPR025944 Sigma-54 interaction domain, conserved site Thimo_2165 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_2165 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2165 IPR002197 DNA binding HTH domain, Fis-type Thimo_2165 IPR003593 AAA+ ATPase domain Thimo_2166 IPR003593 AAA+ ATPase domain Thimo_2166 IPR011527 ABC transporter type 1, transmembrane domain Thimo_2166 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_2166 IPR003439 ABC transporter-like Thimo_2166 IPR017871 ABC transporter, conserved site Thimo_2166 IPR011917 ABC transporter, lipid A export, MsbA Thimo_2166 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2166 IPR039421 Type I protein exporter Thimo_2167 IPR012309 DNA ligase, ATP-dependent, C-terminal Thimo_2167 IPR016059 DNA ligase, ATP-dependent, conserved site Thimo_2167 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily Thimo_2167 IPR012340 Nucleic acid-binding, OB-fold Thimo_2167 IPR000977 DNA ligase, ATP-dependent Thimo_2167 IPR012308 DNA ligase, ATP-dependent, N-terminal Thimo_2167 IPR012310 DNA ligase, ATP-dependent, central Thimo_2167 IPR022865 DNA ligase, ATP-dependent, bacterial/archaeal Thimo_2170 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2170 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2170 IPR016454 Cysteine desulfurase Thimo_2170 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal Thimo_2170 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2170 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2170 IPR000192 Aminotransferase class V domain Thimo_2170 IPR010240 Cysteine desulfurase IscS Thimo_2171 IPR000595 Cyclic nucleotide-binding domain Thimo_2171 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2171 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2171 IPR014710 RmlC-like jelly roll fold Thimo_2171 IPR012318 Crp-type HTH domain Thimo_2171 IPR018488 Cyclic nucleotide-binding, conserved site Thimo_2171 IPR018490 Cyclic nucleotide-binding-like Thimo_2172 IPR000771 Fructose-bisphosphate aldolase, class-II Thimo_2172 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype Thimo_2172 IPR013785 Aldolase-type TIM barrel Thimo_2173 IPR015793 Pyruvate kinase, barrel Thimo_2173 IPR015806 Pyruvate kinase, insert domain superfamily Thimo_2173 IPR036918 Pyruvate kinase, C-terminal domain superfamily Thimo_2173 IPR015795 Pyruvate kinase, C-terminal Thimo_2173 IPR018209 Pyruvate kinase, active site Thimo_2173 IPR011037 Pyruvate kinase-like, insert domain superfamily Thimo_2173 IPR001697 Pyruvate kinase Thimo_2173 IPR040442 Pyruvate kinase-like domain superfamily Thimo_2173 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_2174 IPR015911 Phosphoglycerate kinase, conserved site Thimo_2174 IPR036043 Phosphoglycerate kinase superfamily Thimo_2174 IPR001576 Phosphoglycerate kinase Thimo_2174 IPR015824 Phosphoglycerate kinase, N-terminal Thimo_2175 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Thimo_2175 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site Thimo_2175 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I Thimo_2175 IPR036291 NAD(P)-binding domain superfamily Thimo_2175 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Thimo_2175 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family Thimo_2176 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Thimo_2176 IPR020826 Transketolase binding site Thimo_2176 IPR005478 Transketolase, bacterial-like Thimo_2176 IPR033248 Transketolase, C-terminal domain Thimo_2176 IPR029061 Thiamin diphosphate-binding fold Thimo_2176 IPR033247 Transketolase family Thimo_2176 IPR005474 Transketolase, N-terminal Thimo_2176 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_2178 IPR022636 S-adenosylmethionine synthetase superfamily Thimo_2178 IPR002133 S-adenosylmethionine synthetase Thimo_2178 IPR022629 S-adenosylmethionine synthetase, central domain Thimo_2178 IPR022630 S-adenosylmethionine synthetase, C-terminal Thimo_2178 IPR022628 S-adenosylmethionine synthetase, N-terminal Thimo_2178 IPR022631 S-adenosylmethionine synthetase, conserved site Thimo_2179 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site Thimo_2179 IPR036291 NAD(P)-binding domain superfamily Thimo_2179 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thimo_2179 IPR000043 Adenosylhomocysteinase-like Thimo_2179 IPR042172 Adenosylhomocysteinase-like superfamily Thimo_2180 IPR029041 FAD-linked oxidoreductase-like Thimo_2180 IPR003171 Methylenetetrahydrofolate reductase Thimo_2180 IPR004620 5,10-methylenetetrahydrofolate reductase Thimo_2180 IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase Thimo_2181 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Thimo_2181 IPR007370 Glutamate--cysteine ligase Thimo_2181 IPR006334 Glutamate--cysteine ligase, monofunctional Thimo_2182 IPR040573 Tail specific protease, N-terminal domain Thimo_2182 IPR020992 Tail specific protease, C-terminal Thimo_2182 IPR005151 Tail specific protease Thimo_2182 IPR004447 C-terminal-processing peptidase S41A Thimo_2182 IPR036034 PDZ superfamily Thimo_2182 IPR001478 PDZ domain Thimo_2182 IPR029045 ClpP/crotonase-like domain superfamily Thimo_2183 IPR036821 Peptide deformylase superfamily Thimo_2183 IPR023635 Peptide deformylase Thimo_2186 IPR002942 RNA-binding S4 domain Thimo_2186 IPR006225 Pseudouridine synthase, RluC/RluD Thimo_2186 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_2186 IPR036986 RNA-binding S4 domain superfamily Thimo_2186 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Thimo_2186 IPR006145 Pseudouridine synthase, RsuA/RluA Thimo_2187 IPR039565 Outer membrane lipoprotein BamD-like Thimo_2187 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_2187 IPR017689 Outer membrane protein assembly factor BamD Thimo_2188 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_2188 IPR002187 Nitrogen regulatory protein PII Thimo_2188 IPR017918 Nitrogen regulatory protein PII, conserved site Thimo_2188 IPR002332 Nitrogen regulatory protein P-II, urydylation site Thimo_2188 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_2189 IPR003694 NAD(+) synthetase Thimo_2189 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_2189 IPR014445 Glutamine-dependent NAD(+) synthetase Thimo_2189 IPR022310 NAD/GMP synthase Thimo_2189 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2189 IPR000132 Nitrilase/cyanide hydratase, conserved site Thimo_2189 IPR003010 Carbon-nitrogen hydrolase Thimo_2190 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_2190 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2190 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_2190 IPR000014 PAS domain Thimo_2190 IPR005467 Histidine kinase domain Thimo_2190 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_2191 IPR003593 AAA+ ATPase domain Thimo_2191 IPR002197 DNA binding HTH domain, Fis-type Thimo_2191 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2191 IPR001789 Signal transduction response regulator, receiver domain Thimo_2191 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_2191 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_2191 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_2191 IPR011006 CheY-like superfamily Thimo_2191 IPR009057 Homeobox-like domain superfamily Thimo_2191 IPR025944 Sigma-54 interaction domain, conserved site Thimo_2192 IPR010167 Amino-acid N-acetyltransferase Thimo_2192 IPR000182 GNAT domain Thimo_2192 IPR001048 Aspartate/glutamate/uridylate kinase Thimo_2192 IPR033719 N-acetylglutamate synthase, kinase-like domain Thimo_2192 IPR036393 Acetylglutamate kinase-like superfamily Thimo_2192 IPR016181 Acyl-CoA N-acyltransferase Thimo_2196 IPR000182 GNAT domain Thimo_2196 IPR016181 Acyl-CoA N-acyltransferase Thimo_2201 IPR009614 Toxin YoeB Thimo_2201 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_2204 IPR013785 Aldolase-type TIM barrel Thimo_2204 IPR004653 tRNA-dihydrouridine(20/20a) synthase Thimo_2204 IPR035587 DUS-like, FMN-binding domain Thimo_2204 IPR018517 tRNA-dihydrouridine synthase, conserved site Thimo_2204 IPR001269 tRNA-dihydrouridine synthase Thimo_2208 IPR011435 Na(+), Li(+), K(+)/H(+) antiporter subunit A/B Thimo_2211 IPR023214 HAD superfamily Thimo_2211 IPR006380 Sucrose-phosphatase-like, N-terminal Thimo_2211 IPR038068 YcgL-like superfamily Thimo_2211 IPR027354 YcgL domain Thimo_2211 IPR006379 HAD-superfamily hydrolase, subfamily IIB Thimo_2211 IPR036412 HAD-like superfamily Thimo_2212 IPR022527 Sucrose phosphorylase Thimo_2212 IPR017853 Glycoside hydrolase superfamily Thimo_2212 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_2212 IPR016377 Sucrose/Glucosylglycerate phosphorylase-related Thimo_2213 IPR034904 Fe-S cluster assembly domain superfamily Thimo_2213 IPR002744 MIP18 family-like Thimo_2214 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Thimo_2214 IPR000825 SUF system FeS cluster assembly, SufBD Thimo_2214 IPR011542 SUF system FeS cluster assembly, SufD Thimo_2215 IPR010230 FeS cluster assembly SUF system, ATPase SufC Thimo_2215 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2215 IPR003593 AAA+ ATPase domain Thimo_2215 IPR003439 ABC transporter-like Thimo_2215 IPR017871 ABC transporter, conserved site Thimo_2216 IPR010231 SUF system FeS cluster assembly, SufB Thimo_2216 IPR000825 SUF system FeS cluster assembly, SufBD Thimo_2216 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Thimo_2218 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2218 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2218 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2218 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2218 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase Thimo_2218 IPR000192 Aminotransferase class V domain Thimo_2220 IPR033177 Phosphatidylserine decarboxylase Thimo_2220 IPR003817 Phosphatidylserine decarboxylase-related Thimo_2220 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 Thimo_2221 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Thimo_2221 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal Thimo_2221 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_2221 IPR004525 Elongation factor P--(R)-beta-lysine ligase Thimo_2222 IPR012340 Nucleic acid-binding, OB-fold Thimo_2222 IPR014722 Ribosomal protein L2, domain 2 Thimo_2222 IPR020599 Translation elongation factor P/YeiP Thimo_2222 IPR008991 Translation protein SH3-like domain superfamily Thimo_2222 IPR011768 Translation elongation factor P Thimo_2222 IPR013852 Translation elongation factor P/YeiP, conserved site Thimo_2222 IPR001059 Translation elongation factor P/YeiP, central Thimo_2222 IPR013185 Translation elongation factor, KOW-like Thimo_2222 IPR015365 Elongation factor P, C-terminal Thimo_2223 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Thimo_2223 IPR013785 Aldolase-type TIM barrel Thimo_2223 IPR022462 Lysine-2,3-aminomutase-like Thimo_2223 IPR007197 Radical SAM Thimo_2230 IPR001036 Acriflavin resistance protein Thimo_2230 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2233 IPR003562 Mutator MutX protein Thimo_2233 IPR020084 NUDIX hydrolase, conserved site Thimo_2233 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_2233 IPR000086 NUDIX hydrolase domain Thimo_2234 IPR023513 Quinolinate synthase A, type 1 Thimo_2234 IPR003473 Quinolinate synthetase A Thimo_2234 IPR036094 Quinolinate synthetase A superfamily Thimo_2235 IPR024167 Cytochrome c4-like Thimo_2235 IPR009056 Cytochrome c-like domain Thimo_2235 IPR036909 Cytochrome c-like domain superfamily Thimo_2236 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2236 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_2236 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_2236 IPR023753 FAD/NAD(P)-binding domain Thimo_2236 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Thimo_2236 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thimo_2236 IPR037092 Flavocytochrome c sulphide dehydrogenase, flavin-binding domain superfamily Thimo_2252 IPR001584 Integrase, catalytic core Thimo_2252 IPR012337 Ribonuclease H-like superfamily Thimo_2252 IPR025948 HTH-like domain Thimo_2252 IPR036397 Ribonuclease H superfamily Thimo_2253 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2253 IPR002514 Transposase IS3/IS911family Thimo_2253 IPR009057 Homeobox-like domain superfamily Thimo_2255 IPR018368 ClpA/B, conserved site 1 Thimo_2255 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2255 IPR028299 ClpA/B, conserved site 2 Thimo_2255 IPR041546 ClpA/ClpB, AAA lid domain Thimo_2255 IPR001270 ClpA/B family Thimo_2255 IPR003959 ATPase, AAA-type, core Thimo_2255 IPR004176 Clp, N-terminal Thimo_2255 IPR036628 Clp, N-terminal domain superfamily Thimo_2255 IPR003593 AAA+ ATPase domain Thimo_2255 IPR019489 Clp ATPase, C-terminal Thimo_2255 IPR017730 Chaperonin ClpB Thimo_2256 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2256 IPR010233 Ubiquinone biosynthesis O-methyltransferase Thimo_2260 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Thimo_2260 IPR006656 Molybdopterin oxidoreductase Thimo_2260 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Thimo_2260 IPR006657 Molybdopterin dinucleotide-binding domain Thimo_2260 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_2260 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Thimo_2262 IPR002699 ATPase, V1 complex, subunit D Thimo_2263 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_2263 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2263 IPR022879 V-type ATP synthase regulatory subunit B/beta Thimo_2263 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily Thimo_2263 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Thimo_2263 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Thimo_2264 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension Thimo_2264 IPR022878 V-type ATP synthase catalytic alpha chain Thimo_2264 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2264 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal Thimo_2264 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Thimo_2264 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily Thimo_2264 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Thimo_2264 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Thimo_2264 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily Thimo_2277 IPR034084 Thermitase-like, domain Thimo_2277 IPR015500 Peptidase S8, subtilisin-related Thimo_2277 IPR000209 Peptidase S8/S53 domain Thimo_2277 IPR022398 Peptidase S8, subtilisin, His-active site Thimo_2277 IPR023827 Peptidase S8, subtilisin, Asp-active site Thimo_2277 IPR036852 Peptidase S8/S53 domain superfamily Thimo_2277 IPR023828 Peptidase S8, subtilisin, Ser-active site Thimo_2281 IPR032466 Metal-dependent hydrolase Thimo_2281 IPR002195 Dihydroorotase, conserved site Thimo_2281 IPR006680 Amidohydrolase-related Thimo_2281 IPR004721 Dihydroorotase homodimeric type Thimo_2282 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal Thimo_2282 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site Thimo_2282 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising Thimo_2282 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal Thimo_2283 IPR010233 Ubiquinone biosynthesis O-methyltransferase Thimo_2283 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2285 IPR036291 NAD(P)-binding domain superfamily Thimo_2285 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2285 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_2286 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Thimo_2286 IPR005805 Rieske iron-sulphur protein, C-terminal Thimo_2286 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit Thimo_2286 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal Thimo_2286 IPR014349 Rieske iron-sulphur protein Thimo_2286 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Thimo_2287 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2287 IPR022380 Glutamyl-Q tRNA(Asp) synthetase Thimo_2287 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Thimo_2287 IPR000924 Glutamyl/glutaminyl-tRNA synthetase Thimo_2288 IPR000962 Zinc finger, DksA/TraR C4-type Thimo_2288 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Thimo_2288 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Thimo_2288 IPR012784 RNA polymerase-binding transcription factor DksA Thimo_2288 IPR037187 DksA, N-terminal domain superfamily Thimo_2289 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain Thimo_2289 IPR004013 PHP domain Thimo_2289 IPR004805 DNA polymerase III, alpha subunit Thimo_2289 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain Thimo_2289 IPR016195 Polymerase/histidinol phosphatase-like Thimo_2289 IPR040982 DNA polymerase III alpha subunit finger domain Thimo_2289 IPR029460 DNA polymerase, helix-hairpin-helix motif Thimo_2289 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Thimo_2289 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_2292 IPR011006 CheY-like superfamily Thimo_2292 IPR003607 HD/PDEase domain Thimo_2292 IPR037522 HD-GYP domain Thimo_2292 IPR001789 Signal transduction response regulator, receiver domain Thimo_2294 IPR001082 Fimbrial protein pilin Thimo_2294 IPR012902 Prokaryotic N-terminal methylation site Thimo_2297 IPR001093 IMP dehydrogenase/GMP reductase Thimo_2297 IPR015875 IMP dehydrogenase / GMP reductase, conserved site Thimo_2297 IPR005990 Inosine-5'-monophosphate dehydrogenase Thimo_2297 IPR000644 CBS domain Thimo_2297 IPR013785 Aldolase-type TIM barrel Thimo_2299 IPR011283 Acetoacetyl-CoA reductase Thimo_2299 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_2299 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 IPR036291 NAD(P)-binding domain superfamily Thimo_2302 IPR005358 Putative zinc- or iron-chelating domain containing protein Thimo_2302 IPR008228 Uncharacterised conserved protein UCP006173 Thimo_2305 IPR000719 Protein kinase domain Thimo_2305 IPR008271 Serine/threonine-protein kinase, active site Thimo_2305 IPR005543 PASTA domain Thimo_2305 IPR017441 Protein kinase, ATP binding site Thimo_2305 IPR011009 Protein kinase-like domain superfamily Thimo_2315 IPR027785 UvrD-like helicase C-terminal domain Thimo_2315 IPR003593 AAA+ ATPase domain Thimo_2315 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain Thimo_2315 IPR006344 RecBCD enzyme subunit RecD Thimo_2315 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2316 IPR034739 UvrD/AddA helicase, N-terminal Thimo_2316 IPR014017 UvrD-like DNA helicase, C-terminal Thimo_2316 IPR004586 RecBCD enzyme subunit RecB Thimo_2316 IPR000212 DNA helicase, UvrD/REP type Thimo_2316 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2316 IPR011604 Exonuclease, phage-type/RecB, C-terminal Thimo_2316 IPR014016 UvrD-like helicase, ATP-binding domain Thimo_2316 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Thimo_2316 IPR011335 Restriction endonuclease type II-like Thimo_2317 IPR006697 RecBCD enzyme subunit RecC Thimo_2317 IPR011335 Restriction endonuclease type II-like Thimo_2317 IPR041500 RecC, C-terminal Thimo_2317 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2317 IPR013986 DExx box DNA helicase domain superfamily Thimo_2319 IPR036768 DNA polymerase III subunit chi superfamily Thimo_2319 IPR007459 DNA polymerase III chi subunit, HolC Thimo_2320 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal Thimo_2320 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B Thimo_2320 IPR023042 Peptidase M17, leucine aminopeptidase Thimo_2320 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal Thimo_2323 IPR005467 Histidine kinase domain Thimo_2323 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_2323 IPR013767 PAS fold Thimo_2323 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2323 IPR035965 PAS domain superfamily Thimo_2323 IPR000700 PAS-associated, C-terminal Thimo_2323 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2323 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_2323 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_2323 IPR000014 PAS domain Thimo_2323 IPR001610 PAC motif Thimo_2324 IPR011006 CheY-like superfamily Thimo_2324 IPR001789 Signal transduction response regulator, receiver domain Thimo_2324 IPR000792 Transcription regulator LuxR, C-terminal Thimo_2324 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2326 IPR032672 TmcA/NAT10/Kre33 Thimo_2326 IPR038321 TmcA, C-terminal domain superfamily Thimo_2326 IPR007807 Helicase domain Thimo_2326 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain Thimo_2326 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2326 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Thimo_2326 IPR016181 Acyl-CoA N-acyltransferase Thimo_2326 IPR000182 GNAT domain Thimo_2326 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA Thimo_2328 IPR006214 Bax inhibitor 1-related Thimo_2330 IPR015866 Serine-tRNA synthetase, type1, N-terminal Thimo_2330 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Thimo_2330 IPR033729 Serine-tRNA ligase catalytic core domain Thimo_2330 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily Thimo_2330 IPR002317 Serine-tRNA ligase, type1 Thimo_2330 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_2330 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Thimo_2331 IPR001537 tRNA/rRNA methyltransferase, SpoU type Thimo_2331 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2331 IPR004441 RNA methyltransferase TrmH family Thimo_2331 IPR013123 RNA 2-O ribose methyltransferase, substrate binding Thimo_2331 IPR029064 50S ribosomal protein L30e-like Thimo_2331 IPR029028 Alpha/beta knot methyltransferases Thimo_2331 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB Thimo_2332 IPR001900 Ribonuclease II/R Thimo_2332 IPR011129 Cold shock domain Thimo_2332 IPR040476 RNase II/RNase R, cold shock domain Thimo_2332 IPR012340 Nucleic acid-binding, OB-fold Thimo_2332 IPR013223 Ribonuclease B, N-terminal OB domain Thimo_2332 IPR022966 Ribonuclease II/R, conserved site Thimo_2332 IPR004476 Ribonuclease II/ribonuclease R Thimo_2332 IPR011805 Ribonuclease R Thimo_2332 IPR013668 Ribonuclease R winged-helix domain Thimo_2332 IPR003029 S1 domain Thimo_2332 IPR022967 RNA-binding domain, S1 Thimo_2334 IPR005467 Histidine kinase domain Thimo_2334 IPR029095 NarX-like, N-terminal Thimo_2334 IPR003660 HAMP domain Thimo_2334 IPR042295 NarX-like, N-terminal domain superfamily Thimo_2334 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing Thimo_2334 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain Thimo_2334 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2334 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2335 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_2335 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2335 IPR000792 Transcription regulator LuxR, C-terminal Thimo_2335 IPR001789 Signal transduction response regulator, receiver domain Thimo_2335 IPR011006 CheY-like superfamily Thimo_2336 IPR035985 Ubiquitin-activating enzyme Thimo_2336 IPR001763 Rhodanese-like domain Thimo_2336 IPR036873 Rhodanese-like domain superfamily Thimo_2336 IPR000594 THIF-type NAD/FAD binding fold Thimo_2339 IPR006357 HAD-superfamily hydrolase, subfamily IIA Thimo_2339 IPR036412 HAD-like superfamily Thimo_2339 IPR023214 HAD superfamily Thimo_2339 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 Thimo_2340 IPR007296 Domain of unknown function DUF403 Thimo_2340 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_2341 IPR038765 Papain-like cysteine peptidase superfamily Thimo_2341 IPR002931 Transglutaminase-like Thimo_2341 IPR013589 Bacterial transglutaminase-like, N-terminal Thimo_2343 IPR017853 Glycoside hydrolase superfamily Thimo_2343 IPR014756 Immunoglobulin E-set Thimo_2343 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) Thimo_2343 IPR012768 Malto-oligosyltrehalose trehalohydrolase Thimo_2343 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_2343 IPR004193 Glycoside hydrolase, family 13, N-terminal Thimo_2343 IPR013783 Immunoglobulin-like fold Thimo_2343 IPR013780 Glycosyl hydrolase, all-beta Thimo_2344 IPR036249 Thioredoxin-like superfamily Thimo_2344 IPR005746 Thioredoxin Thimo_2344 IPR017937 Thioredoxin, conserved site Thimo_2344 IPR013766 Thioredoxin domain Thimo_2345 IPR005746 Thioredoxin Thimo_2345 IPR013766 Thioredoxin domain Thimo_2345 IPR036249 Thioredoxin-like superfamily Thimo_2345 IPR017937 Thioredoxin, conserved site Thimo_2347 IPR003691 Putative fluoride ion transporter CrcB Thimo_2348 IPR000352 Peptide chain release factor class I Thimo_2349 IPR000462 CDP-alcohol phosphatidyltransferase Thimo_2349 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase Thimo_2350 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal Thimo_2350 IPR036249 Thioredoxin-like superfamily Thimo_2350 IPR042128 NuoE domain Thimo_2350 IPR002023 NADH-quinone oxidoreductase subunit E-like Thimo_2351 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_2351 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site Thimo_2351 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Thimo_2351 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Thimo_2351 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_2351 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain Thimo_2351 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Thimo_2352 IPR016214 NAD-reducing hydrogenase, HoxS gamma subunit Thimo_2352 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site Thimo_2352 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding Thimo_2352 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_2352 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_2354 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_2354 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Thimo_2354 IPR001501 Nickel-dependent hydrogenase, large subunit Thimo_2358 IPR036590 SOS response associated peptidase-like Thimo_2358 IPR003738 SOS response associated peptidase (SRAP) Thimo_2360 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2360 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_2360 IPR005467 Histidine kinase domain Thimo_2360 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_2360 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_2360 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2360 IPR003660 HAMP domain Thimo_2361 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_2361 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2361 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_2361 IPR001789 Signal transduction response regulator, receiver domain Thimo_2361 IPR039420 Transcriptional regulatory protein WalR-like Thimo_2361 IPR011006 CheY-like superfamily Thimo_2363 IPR017961 DNA polymerase, Y-family, little finger domain Thimo_2363 IPR022880 DNA polymerase IV Thimo_2363 IPR001126 UmuC domain Thimo_2363 IPR036775 DNA polymerase, Y-family, little finger domain superfamily Thimo_2365 IPR041471 UvrB, interaction domain Thimo_2365 IPR037235 TRCF-like, C-terminal domain Thimo_2365 IPR005118 Transcription-repair-coupling factor, C-terminal domain Thimo_2365 IPR004576 Transcription-repair coupling factor Thimo_2365 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2365 IPR011545 DEAD/DEAH box helicase domain Thimo_2365 IPR003711 CarD-like/TRCF domain Thimo_2365 IPR036101 CarD-like/TRCF domain superfamily Thimo_2365 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2365 IPR001650 Helicase, C-terminal Thimo_2367 IPR036873 Rhodanese-like domain superfamily Thimo_2367 IPR001763 Rhodanese-like domain Thimo_2368 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2368 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase Thimo_2369 IPR002156 Ribonuclease H domain Thimo_2369 IPR036397 Ribonuclease H superfamily Thimo_2369 IPR012337 Ribonuclease H-like superfamily Thimo_2369 IPR022892 Ribonuclease HI Thimo_2370 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2370 IPR013216 Methyltransferase type 11 Thimo_2370 IPR026669 Arsenite methyltransferase-like Thimo_2371 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase Thimo_2371 IPR042096 Dihydroxy-acid dehydratase, C-terminal Thimo_2371 IPR004404 Dihydroxy-acid dehydratase Thimo_2371 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site Thimo_2371 IPR037237 IlvD/EDD, N-terminal domain Thimo_2372 IPR015991 Uncharacterised hydrolase TatD-type Thimo_2372 IPR001130 TatD family Thimo_2372 IPR032466 Metal-dependent hydrolase Thimo_2372 IPR018228 Deoxyribonuclease, TatD-related, conserved site Thimo_2374 IPR015199 DNA polymerase III, delta subunit, C-terminal Thimo_2374 IPR004622 DNA polymerase III, delta prime subunit Thimo_2374 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal Thimo_2374 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2375 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2375 IPR018094 Thymidylate kinase Thimo_2375 IPR039430 Thymidylate kinase-like domain Thimo_2376 IPR003770 Endolytic murein transglycosylase Thimo_2377 IPR001544 Aminotransferase class IV Thimo_2377 IPR036038 Aminotransferase-like, PLP-dependent enzymes Thimo_2377 IPR018300 Aminotransferase, class IV, conserved site Thimo_2377 IPR017824 Aminodeoxychorismate lyase, class IV Thimo_2378 IPR016039 Thiolase-like Thimo_2378 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 Thimo_2378 IPR000794 Beta-ketoacyl synthase Thimo_2378 IPR018201 Beta-ketoacyl synthase, active site Thimo_2378 IPR014030 Beta-ketoacyl synthase, N-terminal Thimo_2378 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Thimo_2378 IPR014031 Beta-ketoacyl synthase, C-terminal Thimo_2379 IPR009081 Phosphopantetheine binding ACP domain Thimo_2379 IPR003231 Acyl carrier protein (ACP) Thimo_2379 IPR036736 ACP-like superfamily Thimo_2379 IPR006162 Phosphopantetheine attachment site Thimo_2380 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_2380 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase Thimo_2380 IPR036291 NAD(P)-binding domain superfamily Thimo_2381 IPR014043 Acyl transferase Thimo_2381 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_2381 IPR001227 Acyl transferase domain superfamily Thimo_2381 IPR024925 Malonyl CoA-acyl carrier protein transacylase Thimo_2381 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type Thimo_2381 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Thimo_2382 IPR016039 Thiolase-like Thimo_2382 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thimo_2382 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal Thimo_2382 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 Thimo_2383 IPR012281 Phospholipid biosynthesis protein, PlsX-like Thimo_2383 IPR003664 Fatty acid synthesis PlsX protein Thimo_2384 IPR011332 Zinc-binding ribosomal protein Thimo_2384 IPR002677 Ribosomal protein L32p Thimo_2385 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Thimo_2385 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria Thimo_2386 IPR042110 Adenylosuccinate synthetase, domain 2 Thimo_2386 IPR042109 Adenylosuccinate synthetase, domain 1 Thimo_2386 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2386 IPR018220 Adenylosuccinate synthase, GTP-binding site Thimo_2386 IPR033128 Adenylosuccinate synthase, active site Thimo_2386 IPR001114 Adenylosuccinate synthetase Thimo_2386 IPR042111 Adenylosuccinate synthetase, domain 3 Thimo_2387 IPR004517 ATP phosphoribosyltransferase regulatory subunit Thimo_2387 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit Thimo_2387 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Thimo_2389 IPR001107 Band 7 domain Thimo_2389 IPR036013 Band 7/SPFH domain superfamily Thimo_2389 IPR010200 HflC Thimo_2390 IPR010201 HflK Thimo_2390 IPR036013 Band 7/SPFH domain superfamily Thimo_2390 IPR020980 Menbrane protein HflK, N-terminal Thimo_2390 IPR001972 Stomatin family Thimo_2390 IPR001107 Band 7 domain Thimo_2391 IPR025121 GTPase HflX, N-terminal Thimo_2391 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2391 IPR042108 GTPase HflX, N-terminal domain superfamily Thimo_2391 IPR016496 GTPase HflX Thimo_2391 IPR006073 GTP binding domain Thimo_2391 IPR032305 GTP-binding protein, middle domain Thimo_2391 IPR030394 HflX-type guanine nucleotide-binding (G) domain Thimo_2391 IPR035647 EF-G domain III/V-like Thimo_2392 IPR005001 RNA-binding protein Hfq Thimo_2392 IPR010920 LSM domain superfamily Thimo_2393 IPR018022 IPP transferase Thimo_2393 IPR039657 Dimethylallyltransferase Thimo_2393 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2394 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms Thimo_2394 IPR014762 DNA mismatch repair, conserved site Thimo_2394 IPR020667 DNA mismatch repair protein, MutL Thimo_2394 IPR002099 DNA mismatch repair protein family, N-terminal Thimo_2394 IPR013507 DNA mismatch repair protein, S5 domain 2-like Thimo_2394 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2394 IPR014790 MutL, C-terminal, dimerisation Thimo_2394 IPR042120 MutL, C-terminal domain, dimerisation subdomain Thimo_2394 IPR042121 MutL, C-terminal domain, regulatory subdomain Thimo_2394 IPR037198 MutL, C-terminal domain superfamily Thimo_2394 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2394 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2397 IPR011545 DEAD/DEAH box helicase domain Thimo_2397 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2397 IPR001650 Helicase, C-terminal Thimo_2397 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2397 IPR005259 Primosomal protein N' Thimo_2397 IPR041222 Primosomal protein N', 3' DNA-binding domain Thimo_2397 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily Thimo_2397 IPR041236 Primosomal protein N, C-terminal domain Thimo_2397 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain Thimo_2401 IPR006664 Outer membrane protein, bacterial Thimo_2401 IPR006665 OmpA-like domain Thimo_2401 IPR006690 Outer membrane protein, OmpA-like, conserved site Thimo_2401 IPR036737 OmpA-like domain superfamily Thimo_2403 IPR005133 Na+/H+ antiporter subunit G Thimo_2405 IPR005281 Monovalent cation:proton antiporter, subunit B Thimo_2405 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Thimo_2406 IPR006673 Mnh complex subunit C1 Thimo_2406 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Thimo_2407 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 Thimo_2407 IPR003918 NADH:ubiquinone oxidoreductase Thimo_2407 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_2408 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_2408 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 Thimo_2408 IPR003918 NADH:ubiquinone oxidoreductase Thimo_2410 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_2410 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Thimo_2411 IPR001135 NADH-quinone oxidoreductase, subunit D Thimo_2411 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_2411 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Thimo_2411 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Thimo_2411 IPR010218 NADH dehydrogenase, subunit C Thimo_2411 IPR023062 NADH dehydrogenase, subunit CD Thimo_2411 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Thimo_2411 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Thimo_2411 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Thimo_2412 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_2412 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Thimo_2412 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Thimo_2412 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Thimo_2412 IPR001135 NADH-quinone oxidoreductase, subunit D Thimo_2416 IPR038734 Uncharacterized protein YhaN, AAA domain Thimo_2416 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2417 IPR014576 Predicted phosphoesterase, YhaO type Thimo_2417 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain Thimo_2417 IPR029052 Metallo-dependent phosphatase-like Thimo_2417 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Thimo_2424 IPR000192 Aminotransferase class V domain Thimo_2424 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2424 IPR010970 Cysteine desulfurase, SufS Thimo_2424 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2424 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2424 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2426 IPR036107 Carbon storage regulator superfamily Thimo_2426 IPR003751 Translational regulator CsrA Thimo_2427 IPR041740 Aspartokinase catalytic domain Thimo_2427 IPR001048 Aspartate/glutamate/uridylate kinase Thimo_2427 IPR005260 Aspartate kinase, monofunctional class Thimo_2427 IPR036393 Acetylglutamate kinase-like superfamily Thimo_2427 IPR018042 Aspartate kinase, conserved site Thimo_2427 IPR002912 ACT domain Thimo_2427 IPR027795 CASTOR, ACT domain Thimo_2427 IPR001341 Aspartate kinase Thimo_2428 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria Thimo_2428 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain Thimo_2428 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily Thimo_2428 IPR002318 Alanine-tRNA ligase, class IIc Thimo_2428 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal Thimo_2428 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2428 IPR012947 Threonyl/alanyl tRNA synthetase, SAD Thimo_2428 IPR003156 DHHA1 domain Thimo_2428 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily Thimo_2429 IPR003783 Regulatory protein RecX Thimo_2429 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2430 IPR020584 DNA recombination/repair protein RecA, conserved site Thimo_2430 IPR013765 DNA recombination and repair protein RecA Thimo_2430 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2430 IPR003593 AAA+ ATPase domain Thimo_2430 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface Thimo_2430 IPR023400 DNA recombination and repair protein RecA, C-terminal Thimo_2430 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain Thimo_2431 IPR009097 Cyclic phosphodiesterase Thimo_2431 IPR014051 Phosphoesterase, HXTX Thimo_2431 IPR004175 RNA 2',3'-cyclic phosphodiesterase Thimo_2432 IPR036653 CinA-like, C-terminal Thimo_2432 IPR008136 CinA, C-terminal Thimo_2434 IPR017938 Riboflavin synthase-like beta-barrel Thimo_2434 IPR017927 FAD-binding domain, ferredoxin reductase-type Thimo_2434 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_2434 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Thimo_2434 IPR012675 Beta-grasp domain superfamily Thimo_2434 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Thimo_2434 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_2434 IPR001433 Oxidoreductase FAD/NAD(P)-binding Thimo_2434 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_2435 IPR029058 Alpha/Beta hydrolase fold Thimo_2435 IPR002925 Dienelactone hydrolase Thimo_2436 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Thimo_2436 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Thimo_2436 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Thimo_2436 IPR002081 Cryptochrome/DNA photolyase class 1 Thimo_2436 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal Thimo_2436 IPR006050 DNA photolyase, N-terminal Thimo_2436 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2437 IPR023370 TrmO-like, N-terminal domain Thimo_2437 IPR036414 YaeB, N-terminal domain superfamily Thimo_2437 IPR036413 YaeB-like superfamily Thimo_2437 IPR040372 YaeB-like Thimo_2437 IPR023368 Uncharacterised protein family UPF0066, conserved site Thimo_2437 IPR041369 TrmO, C-terminal Thimo_2438 IPR000671 Peptidase A31 family Thimo_2438 IPR023430 Peptidase HybD-like domain superfamily Thimo_2438 IPR004419 Peptidase A31, hydrogenase expression/formation protein Thimo_2442 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Thimo_2442 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily Thimo_2442 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Thimo_2444 IPR003593 AAA+ ATPase domain Thimo_2444 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2444 IPR021886 MgsA AAA+ ATPase C-terminal Thimo_2444 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal Thimo_2444 IPR003959 ATPase, AAA-type, core Thimo_2444 IPR032423 AAA C-terminal domain Thimo_2445 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Thimo_2445 IPR029046 Lipoprotein localisation LolA/LolB/LppX Thimo_2445 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria Thimo_2446 IPR025199 DNA translocase FtsK, 4TM region Thimo_2446 IPR041027 FtsK alpha domain Thimo_2446 IPR002543 FtsK domain Thimo_2446 IPR018541 FtsK gamma domain Thimo_2446 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2446 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2446 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2446 IPR003593 AAA+ ATPase domain Thimo_2447 IPR005982 Thioredoxin reductase Thimo_2447 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site Thimo_2447 IPR023753 FAD/NAD(P)-binding domain Thimo_2447 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2449 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal Thimo_2449 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase Thimo_2449 IPR016181 Acyl-CoA N-acyltransferase Thimo_2450 IPR007471 N-end aminoacyl transferase, N-terminal Thimo_2450 IPR016181 Acyl-CoA N-acyltransferase Thimo_2450 IPR017138 Aspartate/glutamate leucyltransferase Thimo_2450 IPR030700 N-end rule aminoacyl transferase Thimo_2450 IPR007472 N-end rule aminoacyl transferase, C-terminal Thimo_2451 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt Thimo_2452 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain Thimo_2452 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily Thimo_2452 IPR036921 PurM-like, N-terminal domain superfamily Thimo_2452 IPR036676 PurM-like, C-terminal domain superfamily Thimo_2452 IPR010918 PurM-like, C-terminal domain Thimo_2452 IPR010073 Phosphoribosylformylglycinamidine synthase PurL Thimo_2452 IPR017926 Glutamine amidotransferase Thimo_2452 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal Thimo_2452 IPR029062 Class I glutamine amidotransferase-like Thimo_2457 IPR014284 RNA polymerase sigma-70 like domain Thimo_2457 IPR014293 RNA polymerase sigma-70, actinobacteria Thimo_2457 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site Thimo_2457 IPR007627 RNA polymerase sigma-70 region 2 Thimo_2457 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 Thimo_2457 IPR013325 RNA polymerase sigma factor, region 2 Thimo_2457 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_2457 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2457 IPR039425 RNA polymerase sigma-70 like Thimo_2461 IPR006638 Elp3/MiaB/NifB Thimo_2461 IPR013848 Methylthiotransferase, N-terminal Thimo_2461 IPR038135 Methylthiotransferase, N-terminal domain superfamily Thimo_2461 IPR005839 Methylthiotransferase Thimo_2461 IPR005840 Ribosomal protein S12 methylthiotransferase RimO Thimo_2461 IPR041582 RimO, TRAM domain Thimo_2461 IPR007197 Radical SAM Thimo_2461 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_2461 IPR002792 TRAM domain Thimo_2461 IPR020612 Methylthiotransferase, conserved site Thimo_2462 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_2462 IPR035909 Methylesterase CheB, C-terminal Thimo_2462 IPR000014 PAS domain Thimo_2462 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase Thimo_2462 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_2462 IPR013656 PAS fold-4 Thimo_2462 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2462 IPR000780 MCP methyltransferase, CheR-type Thimo_2462 IPR035965 PAS domain superfamily Thimo_2465 IPR011006 CheY-like superfamily Thimo_2465 IPR001789 Signal transduction response regulator, receiver domain Thimo_2465 IPR000014 PAS domain Thimo_2465 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_2465 IPR013656 PAS fold-4 Thimo_2465 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2465 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2465 IPR035965 PAS domain superfamily Thimo_2465 IPR005467 Histidine kinase domain Thimo_2465 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_2465 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_2465 IPR000700 PAS-associated, C-terminal Thimo_2465 IPR001610 PAC motif Thimo_2466 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2466 IPR000792 Transcription regulator LuxR, C-terminal Thimo_2466 IPR001789 Signal transduction response regulator, receiver domain Thimo_2466 IPR011006 CheY-like superfamily Thimo_2467 IPR006685 Mechanosensitive ion channel MscS Thimo_2467 IPR010920 LSM domain superfamily Thimo_2467 IPR008910 Conserved TM helix Thimo_2467 IPR011066 Mechanosensitive ion channel MscS, C-terminal Thimo_2467 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_2467 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Thimo_2467 IPR006686 Mechanosensitive ion channel MscS, conserved site Thimo_2469 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain Thimo_2469 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain Thimo_2469 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger Thimo_2470 IPR018723 Protein of unknown function DUF2254, membrane Thimo_2473 IPR002549 Transmembrane protein TqsA-like Thimo_2482 IPR014004 Transport-associated and nodulation domain, bacteria Thimo_2482 IPR007055 BON domain Thimo_2488 IPR011013 Galactose mutarotase-like domain superfamily Thimo_2488 IPR008928 Six-hairpin glycosidase superfamily Thimo_2488 IPR012341 Six-hairpin glycosidase-like superfamily Thimo_2488 IPR010383 Glycosyl hydrolase 94 Thimo_2488 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Thimo_2488 IPR037820 NdvB, GH94N domain 1 Thimo_2488 IPR037824 NdvB, GH94N domain 2 Thimo_2488 IPR019282 Domain of unknown function DUF2329 Thimo_2488 IPR009342 Putative carbohydrate binding domain Thimo_2488 IPR033432 Glycosyl hydrolase 36, catalytic domain Thimo_2489 IPR000014 PAS domain Thimo_2489 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_2489 IPR000780 MCP methyltransferase, CheR-type Thimo_2489 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_2489 IPR035965 PAS domain superfamily Thimo_2489 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase Thimo_2489 IPR035909 Methylesterase CheB, C-terminal Thimo_2489 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2489 IPR013656 PAS fold-4 Thimo_2490 IPR001633 EAL domain Thimo_2490 IPR029787 Nucleotide cyclase Thimo_2490 IPR005330 MHYT domain Thimo_2490 IPR000160 GGDEF domain Thimo_2490 IPR035919 EAL domain superfamily Thimo_2491 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Thimo_2492 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2492 IPR012727 Glycine oxidase ThiO Thimo_2492 IPR006076 FAD dependent oxidoreductase Thimo_2498 IPR003400 Biopolymer transport protein ExbD/TolR Thimo_2499 IPR002898 MotA/TolQ/ExbB proton channel Thimo_2500 IPR010916 TonB box, conserved site Thimo_2500 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_2500 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_2500 IPR037066 TonB-dependent receptor, plug domain superfamily Thimo_2500 IPR012910 TonB-dependent receptor, plug domain Thimo_2500 IPR039426 Vitamin B12 transporter BtuB-like Thimo_2500 IPR010917 TonB-dependent receptor, conserved site Thimo_2501 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Thimo_2501 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_2501 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2507 IPR003593 AAA+ ATPase domain Thimo_2507 IPR003439 ABC transporter-like Thimo_2507 IPR017871 ABC transporter, conserved site Thimo_2507 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2509 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2509 IPR002481 Ferric-uptake regulator Thimo_2509 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2510 IPR001626 ABC transporter, TroCD-like Thimo_2510 IPR037294 ABC transporter, BtuC-like Thimo_2511 IPR017871 ABC transporter, conserved site Thimo_2511 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2511 IPR003593 AAA+ ATPase domain Thimo_2511 IPR003439 ABC transporter-like Thimo_2512 IPR006127 Periplasmic solute binding protein, ZnuA-like Thimo_2512 IPR035520 High-affinity zinc uptake system protein ZnuA Thimo_2513 IPR012784 RNA polymerase-binding transcription factor DksA Thimo_2513 IPR000962 Zinc finger, DksA/TraR C4-type Thimo_2513 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Thimo_2513 IPR037187 DksA, N-terminal domain superfamily Thimo_2515 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2515 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_2515 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Thimo_2519 IPR003838 ABC transporter permease protein domain Thimo_2519 IPR025857 MacB-like periplasmic core domain Thimo_2519 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E Thimo_2521 IPR003593 AAA+ ATPase domain Thimo_2521 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2521 IPR017871 ABC transporter, conserved site Thimo_2521 IPR003439 ABC transporter-like Thimo_2525 IPR028366 Phosphate transport system protein PhoU Thimo_2525 IPR038078 PhoU-like domain superfamily Thimo_2525 IPR026022 PhoU domain Thimo_2526 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2526 IPR015850 ABC transporter, phosphate import, PstB Thimo_2526 IPR017871 ABC transporter, conserved site Thimo_2526 IPR003593 AAA+ ATPase domain Thimo_2526 IPR003439 ABC transporter-like Thimo_2526 IPR005670 Phosphate transport system permease protein 1 Thimo_2527 IPR005672 Phosphate transport system permease protein PstA Thimo_2527 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_2527 IPR035906 MetI-like superfamily Thimo_2528 IPR011864 Phosphate ABC transporter, permease protein PstC Thimo_2528 IPR035906 MetI-like superfamily Thimo_2528 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_2530 IPR000644 CBS domain Thimo_2530 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily Thimo_2530 IPR006667 SLC41 divalent cation transporters, integral membrane domain Thimo_2530 IPR006669 Magnesium transporter MgtE Thimo_2530 IPR006668 Magnesium transporter, MgtE intracellular domain Thimo_2530 IPR038076 MgtE, N-terminal domain superfamily Thimo_2530 IPR038048 Magnesium transporter MgtE, transmembrane domain Thimo_2531 IPR004681 TRAP transporter large membrane protein DctM Thimo_2531 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Thimo_2532 IPR007387 TRAP transporter, small membrane protein DctQ Thimo_2533 IPR038404 TRAP transporter solute receptor DctP superfamily Thimo_2533 IPR018389 TRAP transporter solute receptor DctP/TeaA Thimo_2533 IPR004682 TRAP transporter solute receptor, DctP family Thimo_2534 IPR022663 Dihydrodipicolinate reductase, C-terminal Thimo_2534 IPR023940 Dihydrodipicolinate reductase Thimo_2534 IPR036291 NAD(P)-binding domain superfamily Thimo_2534 IPR000846 Dihydrodipicolinate reductase, N-terminal Thimo_2534 IPR022664 Dihydrodipicolinate reductase, conserved site Thimo_2535 IPR018253 DnaJ domain, conserved site Thimo_2535 IPR008971 HSP40/DnaJ peptide-binding Thimo_2535 IPR001305 Heat shock protein DnaJ, cysteine-rich domain Thimo_2535 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Thimo_2535 IPR002939 Chaperone DnaJ, C-terminal Thimo_2535 IPR036869 Chaperone J-domain superfamily Thimo_2535 IPR012724 Chaperone DnaJ Thimo_2535 IPR001623 DnaJ domain Thimo_2536 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Thimo_2536 IPR018181 Heat shock protein 70, conserved site Thimo_2536 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Thimo_2536 IPR013126 Heat shock protein 70 family Thimo_2536 IPR012725 Chaperone DnaK Thimo_2537 IPR009012 GrpE nucleotide exchange factor, head Thimo_2537 IPR013805 GrpE nucleotide exchange factor, coiled-coil Thimo_2537 IPR000740 GrpE nucleotide exchange factor Thimo_2538 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal Thimo_2538 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily Thimo_2538 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain Thimo_2538 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2538 IPR029016 GAF-like domain superfamily Thimo_2538 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2538 IPR002571 Heat-inducible transcription repressor HrcA Thimo_2539 IPR002504 NAD kinase Thimo_2539 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Thimo_2539 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal Thimo_2539 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal Thimo_2540 IPR004604 DNA recombination/repair protein RecN Thimo_2540 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2540 IPR003395 RecF/RecN/SMC, N-terminal Thimo_2541 IPR002481 Ferric-uptake regulator Thimo_2541 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2541 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2542 IPR037873 BamE-like Thimo_2542 IPR026592 Outer membrane protein assembly factor BamE Thimo_2542 IPR007450 Lipoprotein SmpA/OmlA Thimo_2543 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_2543 IPR005346 RnfH protein Thimo_2543 IPR037021 RnfH superfamily Thimo_2544 IPR023393 START-like domain superfamily Thimo_2544 IPR005031 Coenzyme Q-binding protein COQ10, START domain Thimo_2545 IPR037272 Sodium:neurotransmitter symporter superfamily Thimo_2545 IPR000175 Sodium:neurotransmitter symporter Thimo_2546 IPR005841 Alpha-D-phosphohexomutase superfamily Thimo_2546 IPR016066 Alpha-D-phosphohexomutase, conserved site Thimo_2546 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Thimo_2546 IPR005843 Alpha-D-phosphohexomutase, C-terminal Thimo_2546 IPR006352 Phosphoglucosamine mutase, bacterial type Thimo_2546 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Thimo_2546 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Thimo_2546 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Thimo_2546 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Thimo_2547 IPR011005 Dihydropteroate synthase-like Thimo_2547 IPR006390 Dihydropteroate synthase Thimo_2547 IPR000489 Pterin-binding domain Thimo_2548 IPR003593 AAA+ ATPase domain Thimo_2548 IPR041569 AAA ATPase, AAA+ lid domain Thimo_2548 IPR003960 ATPase, AAA-type, conserved site Thimo_2548 IPR005936 Peptidase, FtsH Thimo_2548 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2548 IPR011546 Peptidase M41, FtsH extracellular Thimo_2548 IPR003959 ATPase, AAA-type, core Thimo_2548 IPR000642 Peptidase M41 Thimo_2548 IPR037219 Peptidase M41-like Thimo_2549 IPR002877 Ribosomal RNA methyltransferase FtsJ domain Thimo_2549 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2549 IPR015507 Ribosomal RNA large subunit methyltransferase E Thimo_2550 IPR004215 Prokaryotic glutathione synthetase, N-terminal Thimo_2550 IPR004218 Prokaryotic glutathione synthetase, ATP-binding Thimo_2550 IPR006284 Glutathione synthetase, prokaryotic Thimo_2550 IPR013815 ATP-grasp fold, subdomain 1 Thimo_2550 IPR011761 ATP-grasp fold Thimo_2550 IPR016185 Pre-ATP-grasp domain superfamily Thimo_2552 IPR006260 TonB/TolA, C-terminal Thimo_2552 IPR003538 Gram-negative bacterial TonB protein Thimo_2552 IPR037682 TonB, C-terminal Thimo_2553 IPR003774 Protein of unknown function UPF0301 Thimo_2554 IPR006641 YqgF/RNase H-like domain Thimo_2554 IPR037027 YqgF/RNase H-like domain superfamily Thimo_2554 IPR012337 Ribonuclease H-like superfamily Thimo_2554 IPR005227 Putative pre-16S rRNA nuclease Thimo_2555 IPR000836 Phosphoribosyltransferase domain Thimo_2555 IPR029057 Phosphoribosyltransferase-like Thimo_2555 IPR023050 Bifunctional protein PyrR Thimo_2556 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Thimo_2556 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Thimo_2556 IPR006130 Aspartate/ornithine carbamoyltransferase Thimo_2556 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Thimo_2556 IPR002082 Aspartate carbamoyltransferase Thimo_2557 IPR006680 Amidohydrolase-related Thimo_2557 IPR004722 Dihydroorotase Thimo_2557 IPR032466 Metal-dependent hydrolase Thimo_2557 IPR011059 Metal-dependent hydrolase, composite domain superfamily Thimo_2558 IPR000951 Phthalate dioxygenase reductase Thimo_2558 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit Thimo_2558 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily Thimo_2558 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Thimo_2558 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit Thimo_2558 IPR017927 FAD-binding domain, ferredoxin reductase-type Thimo_2558 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_2558 IPR017938 Riboflavin synthase-like beta-barrel Thimo_2558 IPR001433 Oxidoreductase FAD/NAD(P)-binding Thimo_2563 IPR002985 Arginine decarboxylase Thimo_2563 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Thimo_2563 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Thimo_2563 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal Thimo_2563 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Thimo_2563 IPR000183 Ornithine/DAP/Arg decarboxylase Thimo_2563 IPR029066 PLP-binding barrel Thimo_2563 IPR041128 Arginine decarboxylase, C-terminal helical Thimo_2563 IPR040634 Arginine decarboxylase, helical bundle domain Thimo_2564 IPR000688 Hydrogenase maturation factor HypA/HybF Thimo_2565 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_2565 IPR003593 AAA+ ATPase domain Thimo_2565 IPR004392 Hydrogenase maturation factor HypB Thimo_2565 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2569 IPR036065 BolA-like superfamily Thimo_2569 IPR002634 BolA protein Thimo_2570 IPR011010 DNA breaking-rejoining enzyme, catalytic core Thimo_2570 IPR013762 Integrase-like, catalytic domain superfamily Thimo_2570 IPR002104 Integrase, catalytic domain Thimo_2570 IPR010998 Integrase/recombinase, N-terminal Thimo_2570 IPR011946 Integrase, integron-type Thimo_2570 IPR004107 Integrase, SAM-like, N-terminal Thimo_2576 IPR031807 HicB-like antitoxin of toxin-antitoxin system Thimo_2576 IPR035069 TTHA1013/TTHA0281-like Thimo_2579 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2579 IPR032090 Peptide chain release factor 3, C-terminal Thimo_2579 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily Thimo_2579 IPR041732 Peptide chain release factor 3, GTP-binding domain Thimo_2579 IPR005225 Small GTP-binding protein domain Thimo_2579 IPR031157 Tr-type G domain, conserved site Thimo_2579 IPR035647 EF-G domain III/V-like Thimo_2579 IPR000795 Transcription factor, GTP-binding domain Thimo_2579 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2579 IPR004548 Peptide chain release factor 3 Thimo_2580 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_2580 IPR000101 Gamma-glutamyltranspeptidase Thimo_2583 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Thimo_2583 IPR010920 LSM domain superfamily Thimo_2583 IPR006686 Mechanosensitive ion channel MscS, conserved site Thimo_2583 IPR006685 Mechanosensitive ion channel MscS Thimo_2583 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_2583 IPR011066 Mechanosensitive ion channel MscS, C-terminal Thimo_2584 IPR004602 UvrABC system subunit A Thimo_2584 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2584 IPR017871 ABC transporter, conserved site Thimo_2584 IPR003439 ABC transporter-like Thimo_2584 IPR041102 UvrA, interaction domain Thimo_2584 IPR041552 UvrA DNA-binding domain Thimo_2585 IPR016170 Cytokinin dehydrogenase, C-terminal domain superfamily Thimo_2585 IPR016166 FAD-binding domain, PCMH-type Thimo_2585 IPR016167 FAD-binding, type PCMH, subdomain 1 Thimo_2585 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_2585 IPR006094 FAD linked oxidase, N-terminal Thimo_2585 IPR004113 FAD-linked oxidase, C-terminal Thimo_2585 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_2585 IPR016164 FAD-linked oxidase-like, C-terminal Thimo_2585 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_2588 IPR024167 Cytochrome c4-like Thimo_2588 IPR036909 Cytochrome c-like domain superfamily Thimo_2588 IPR009056 Cytochrome c-like domain Thimo_2589 IPR016163 Aldehyde dehydrogenase, C-terminal Thimo_2589 IPR016161 Aldehyde/histidinol dehydrogenase Thimo_2589 IPR015590 Aldehyde dehydrogenase domain Thimo_2589 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Thimo_2589 IPR016162 Aldehyde dehydrogenase, N-terminal Thimo_2591 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Thimo_2591 IPR009057 Homeobox-like domain superfamily Thimo_2591 IPR037923 Transcription regulator HTH-like Thimo_2591 IPR018060 DNA binding HTH domain, AraC-type Thimo_2591 IPR018062 HTH domain AraC-type, conserved site Thimo_2592 IPR008918 Helix-hairpin-helix motif, class 2 Thimo_2592 IPR002421 5'-3' exonuclease, N-terminal Thimo_2592 IPR019760 DNA-directed DNA polymerase, family A, conserved site Thimo_2592 IPR002298 DNA polymerase A Thimo_2592 IPR018320 DNA polymerase 1 Thimo_2592 IPR001098 DNA-directed DNA polymerase, family A, palm domain Thimo_2592 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Thimo_2592 IPR029060 PIN-like domain superfamily Thimo_2592 IPR012337 Ribonuclease H-like superfamily Thimo_2592 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal Thimo_2592 IPR036397 Ribonuclease H superfamily Thimo_2592 IPR002562 3'-5' exonuclease domain Thimo_2592 IPR020045 DNA polymerase I-like, H3TH domain Thimo_2593 IPR011006 CheY-like superfamily Thimo_2593 IPR000792 Transcription regulator LuxR, C-terminal Thimo_2593 IPR001789 Signal transduction response regulator, receiver domain Thimo_2593 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_2597 IPR002559 Transposase, IS4-like Thimo_2597 IPR032806 H repeat-associated protein, N-terminal Thimo_2598 IPR029028 Alpha/beta knot methyltransferases Thimo_2598 IPR003742 RNA methyltransferase RlmH Thimo_2598 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2599 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein Thimo_2599 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_2600 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G Thimo_2600 IPR012340 Nucleic acid-binding, OB-fold Thimo_2600 IPR004659 Ribonuclease E/G Thimo_2600 IPR003029 S1 domain Thimo_2600 IPR022967 RNA-binding domain, S1 Thimo_2603 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_2603 IPR001110 Uncharacterised protein family UPF0012, conserved site Thimo_2603 IPR003010 Carbon-nitrogen hydrolase Thimo_2604 IPR002510 Metalloprotease TldD/PmbA Thimo_2604 IPR036059 Metalloprotease TldD/PmbA superfamily Thimo_2604 IPR035068 Metalloprotease TldD/PmbA, N-terminal Thimo_2604 IPR025502 TldD Thimo_2605 IPR035068 Metalloprotease TldD/PmbA, N-terminal Thimo_2605 IPR002510 Metalloprotease TldD/PmbA Thimo_2605 IPR036059 Metalloprotease TldD/PmbA superfamily Thimo_2607 IPR024934 Rubredoxin-like domain Thimo_2607 IPR012347 Ferritin-like Thimo_2607 IPR009040 Ferritin-like diiron domain Thimo_2607 IPR009078 Ferritin-like superfamily Thimo_2607 IPR003251 Rubrerythrin Thimo_2608 IPR002589 Macro domain Thimo_2609 IPR012127 Cytochrome c prime Thimo_2609 IPR015984 Cytochrome c prime, subgroup Thimo_2609 IPR002321 Cytochrome c, class II Thimo_2609 IPR010980 Cytochrome c/b562 Thimo_2613 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Thimo_2613 IPR011611 Carbohydrate kinase PfkB Thimo_2613 IPR029056 Ribokinase-like Thimo_2616 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial Thimo_2616 IPR000462 CDP-alcohol phosphatidyltransferase Thimo_2616 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Thimo_2617 IPR004791 UvrABC system, subunit C Thimo_2617 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Thimo_2617 IPR036876 UVR domain superfamily Thimo_2617 IPR000305 GIY-YIG endonuclease Thimo_2617 IPR035901 GIY-YIG endonuclease superfamily Thimo_2617 IPR001943 UVR domain Thimo_2617 IPR038476 UvrC homology region 2 superfamily Thimo_2617 IPR001162 UvrC family homology region Thimo_2617 IPR010994 RuvA domain 2-like Thimo_2618 IPR011006 CheY-like superfamily Thimo_2618 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_2618 IPR001789 Signal transduction response regulator, receiver domain Thimo_2618 IPR000792 Transcription regulator LuxR, C-terminal Thimo_2629 IPR011962 dCTP deaminase Thimo_2629 IPR029054 dUTPase-like Thimo_2629 IPR036157 dUTPase-like superfamily Thimo_2629 IPR033704 dUTPase, trimeric Thimo_2630 IPR028343 Fructose-1,6-bisphosphatase Thimo_2630 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal Thimo_2630 IPR000146 Fructose-1,6-bisphosphatase class 1 Thimo_2633 IPR002549 Transmembrane protein TqsA-like Thimo_2635 IPR000847 Transcription regulator HTH, LysR Thimo_2635 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2635 IPR005119 LysR, substrate-binding Thimo_2635 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2637 IPR027396 DsrEFH-like Thimo_2637 IPR032836 DsrE2-like family Thimo_2638 IPR001455 TusA-like domain Thimo_2638 IPR036868 TusA-like domain superfamily Thimo_2639 IPR001763 Rhodanese-like domain Thimo_2639 IPR036873 Rhodanese-like domain superfamily Thimo_2640 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site Thimo_2640 IPR006367 Sirohaem synthase, N-terminal Thimo_2640 IPR006366 Uroporphyrin-III C-methyltransferase Thimo_2640 IPR014776 Tetrapyrrole methylase, subdomain 2 Thimo_2640 IPR036291 NAD(P)-binding domain superfamily Thimo_2640 IPR037115 Sirohaem synthase, dimerisation domain superfamily Thimo_2640 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_2640 IPR000878 Tetrapyrrole methylase Thimo_2640 IPR012409 Sirohaem synthase Thimo_2640 IPR028281 Siroheme synthase, central domain Thimo_2640 IPR019478 Sirohaem synthase, dimerisation domain Thimo_2640 IPR035996 Tetrapyrrole methylase superfamily Thimo_2641 IPR003824 Undecaprenyl-diphosphatase UppP Thimo_2642 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2642 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2642 IPR006234 O-succinylhomoserine sulfhydrylase Thimo_2642 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2642 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme Thimo_2643 IPR005854 Amidophosphoribosyltransferase Thimo_2643 IPR017932 Glutamine amidotransferase type 2 domain Thimo_2643 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_2643 IPR000836 Phosphoribosyltransferase domain Thimo_2643 IPR029057 Phosphoribosyltransferase-like Thimo_2643 IPR035584 Amidophosphoribosyltransferase, N-terminal Thimo_2644 IPR003825 Colicin V production, CvpA Thimo_2646 IPR013221 Mur ligase, central Thimo_2646 IPR001645 Folylpolyglutamate synthetase Thimo_2646 IPR018109 Folylpolyglutamate synthetase, conserved site Thimo_2646 IPR036565 Mur-like, catalytic domain superfamily Thimo_2646 IPR004101 Mur ligase, C-terminal Thimo_2646 IPR036615 Mur ligase, C-terminal domain superfamily Thimo_2647 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit Thimo_2647 IPR029045 ClpP/crotonase-like domain superfamily Thimo_2647 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal Thimo_2647 IPR041010 Acetyl-coA carboxylase zinc finger domain Thimo_2647 IPR034733 Acetyl-CoA carboxylase Thimo_2648 IPR002028 Tryptophan synthase, alpha chain Thimo_2648 IPR018204 Tryptophan synthase, alpha chain, active site Thimo_2648 IPR011060 Ribulose-phosphate binding barrel Thimo_2648 IPR013785 Aldolase-type TIM barrel Thimo_2649 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_2649 IPR006654 Tryptophan synthase, beta chain Thimo_2649 IPR023026 Tryptophan synthase beta chain/beta chain-like Thimo_2649 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_2649 IPR006653 Tryptophan synthase, beta chain, conserved site Thimo_2650 IPR011060 Ribulose-phosphate binding barrel Thimo_2650 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) Thimo_2650 IPR013785 Aldolase-type TIM barrel Thimo_2651 IPR020095 Pseudouridine synthase I, TruA, C-terminal Thimo_2651 IPR001406 Pseudouridine synthase I, TruA Thimo_2651 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_2651 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain Thimo_2653 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type Thimo_2653 IPR012280 Semialdehyde dehydrogenase, dimerisation domain Thimo_2653 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site Thimo_2653 IPR036291 NAD(P)-binding domain superfamily Thimo_2653 IPR012080 Aspartate-semialdehyde dehydrogenase Thimo_2653 IPR000534 Semialdehyde dehydrogenase, NAD-binding Thimo_2654 IPR024084 Isopropylmalate dehydrogenase-like domain Thimo_2654 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site Thimo_2654 IPR004429 Isopropylmalate dehydrogenase Thimo_2655 IPR033940 3-isopropylmalate dehydratase, swivel domain Thimo_2655 IPR004431 3-isopropylmalate dehydratase, small subunit Thimo_2655 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Thimo_2655 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Thimo_2656 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Thimo_2656 IPR036008 Aconitase, iron-sulfur domain Thimo_2656 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Thimo_2656 IPR033941 3-Isopropylmalate dehydratase, catalytic domain Thimo_2656 IPR018136 Aconitase family, 4Fe-4S cluster binding site Thimo_2656 IPR004430 3-isopropylmalate dehydratase, large subunit Thimo_2657 IPR002583 Ribosomal protein S20 Thimo_2657 IPR036510 Ribosomal protein S20 superfamily Thimo_2663 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Thimo_2663 IPR012724 Chaperone DnaJ Thimo_2663 IPR002939 Chaperone DnaJ, C-terminal Thimo_2663 IPR001623 DnaJ domain Thimo_2663 IPR018253 DnaJ domain, conserved site Thimo_2663 IPR008971 HSP40/DnaJ peptide-binding Thimo_2663 IPR001305 Heat shock protein DnaJ, cysteine-rich domain Thimo_2663 IPR036869 Chaperone J-domain superfamily Thimo_2665 IPR025669 AAA domain Thimo_2665 IPR005702 Exopolysaccharide synthesis protein Thimo_2665 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2676 IPR000715 Glycosyl transferase, family 4 Thimo_2676 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site Thimo_2677 IPR012705 2-methylcitrate dehydratase PrpD Thimo_2677 IPR042183 MmgE/PrpD superfamily, domain 1 Thimo_2677 IPR005656 MmgE/PrpD Thimo_2677 IPR042188 MmgE/PrpD superfamily, domain 2 Thimo_2677 IPR036148 MmgE/PrpD superfamily Thimo_2678 IPR024176 Citrate synthase, bacterial-type Thimo_2678 IPR002020 Citrate synthase Thimo_2678 IPR011278 2-methylcitrate synthase/citrate synthase type I Thimo_2678 IPR016143 Citrate synthase-like, small alpha subdomain Thimo_2678 IPR016142 Citrate synthase-like, large alpha subdomain Thimo_2678 IPR019810 Citrate synthase active site Thimo_2678 IPR036969 Citrate synthase superfamily Thimo_2679 IPR040442 Pyruvate kinase-like domain superfamily Thimo_2679 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_2679 IPR012695 2-methylisocitrate lyase Thimo_2679 IPR039556 ICL/PEPM domain Thimo_2679 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site Thimo_2680 IPR000524 Transcription regulator HTH, GntR Thimo_2680 IPR000485 AsnC-type HTH domain Thimo_2680 IPR008920 Transcription regulator FadR/GntR, C-terminal Thimo_2680 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2680 IPR011711 GntR, C-terminal Thimo_2680 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2681 IPR020845 AMP-binding, conserved site Thimo_2681 IPR042099 AMP-dependent synthetase-like superfamily Thimo_2681 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain Thimo_2681 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_2681 IPR000873 AMP-dependent synthetase/ligase Thimo_2687 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2687 IPR012090 Chromosome partition protein MukB Thimo_2687 IPR032520 MukB, hinge domain Thimo_2687 IPR007406 MukB, N-terminal domain Thimo_2693 IPR001633 EAL domain Thimo_2693 IPR035919 EAL domain superfamily Thimo_2693 IPR000160 GGDEF domain Thimo_2693 IPR005330 MHYT domain Thimo_2693 IPR029787 Nucleotide cyclase Thimo_2695 IPR000189 Prokaryotic transglycosylase, active site Thimo_2695 IPR008939 Lytic transglycosylase, superhelical U-shaped Thimo_2695 IPR012289 Lytic transglycosylase, superhelical linker Thimo_2695 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily Thimo_2695 IPR023346 Lysozyme-like domain superfamily Thimo_2695 IPR008258 Transglycosylase SLT domain 1 Thimo_2698 IPR021878 Protein-glutamine gamma-glutamyltransferase TgpA, N-terminal Thimo_2698 IPR002931 Transglutaminase-like Thimo_2698 IPR038765 Papain-like cysteine peptidase superfamily Thimo_2698 IPR025403 Domain of unknown function DUF4129 Thimo_2700 IPR013780 Glycosyl hydrolase, all-beta Thimo_2700 IPR017853 Glycoside hydrolase superfamily Thimo_2700 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_2701 IPR002711 HNH endonuclease Thimo_2701 IPR003615 HNH nuclease Thimo_2702 IPR004852 Di-haem cytochrome c peroxidase Thimo_2702 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase Thimo_2702 IPR009056 Cytochrome c-like domain Thimo_2702 IPR036909 Cytochrome c-like domain superfamily Thimo_2704 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Thimo_2704 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Thimo_2704 IPR017459 Glycosyl transferase family 3, N-terminal domain Thimo_2704 IPR000312 Glycosyl transferase, family 3 Thimo_2704 IPR005940 Anthranilate phosphoribosyl transferase Thimo_2705 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Thimo_2705 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Thimo_2710 IPR010240 Cysteine desulfurase IscS Thimo_2710 IPR016454 Cysteine desulfurase Thimo_2710 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2710 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2710 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2710 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2710 IPR000192 Aminotransferase class V domain Thimo_2713 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2713 IPR038729 Rad50/SbcC-type AAA domain Thimo_2717 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2717 IPR038729 Rad50/SbcC-type AAA domain Thimo_2721 IPR013670 EcoEI R protein C-terminal domain Thimo_2721 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal Thimo_2721 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2721 IPR001650 Helicase, C-terminal Thimo_2721 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2721 IPR006935 Helicase/UvrB, N-terminal Thimo_2734 IPR007156 LemA Thimo_2734 IPR023353 LemA-like domain superfamily Thimo_2736 IPR004605 DNA helicase, Holliday junction RuvB-type Thimo_2736 IPR041445 RuvB, AAA lid domain Thimo_2736 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2736 IPR008823 RuvB C-terminal winged helix domain Thimo_2736 IPR008824 RuvB-like P-loop domain Thimo_2736 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2736 IPR003593 AAA+ ATPase domain Thimo_2736 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2738 IPR004710 Bile acid:sodium symporter Thimo_2738 IPR038770 Sodium/solute symporter superfamily Thimo_2738 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 Thimo_2739 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme Thimo_2739 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase Thimo_2739 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2739 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2739 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2740 IPR036291 NAD(P)-binding domain superfamily Thimo_2740 IPR001509 NAD-dependent epimerase/dehydratase Thimo_2740 IPR005886 UDP-glucose 4-epimerase Thimo_2743 IPR003682 rRNA small subunit methyltransferase G Thimo_2743 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2747 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2747 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_2747 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_2747 IPR005861 Histidinol-phosphate aminotransferase family Thimo_2747 IPR004839 Aminotransferase, class I/classII Thimo_2748 IPR012131 Histidinol dehydrogenase Thimo_2748 IPR001692 Histidinol dehydrogenase, conserved site Thimo_2748 IPR022695 Histidinol dehydrogenase, monofunctional Thimo_2748 IPR016161 Aldehyde/histidinol dehydrogenase Thimo_2749 IPR024893 ATP phosphoribosyltransferase HisG, short form Thimo_2749 IPR018198 ATP phosphoribosyltransferase, conserved site Thimo_2749 IPR001348 ATP phosphoribosyltransferase HisG Thimo_2749 IPR013820 ATP phosphoribosyltransferase, catalytic domain Thimo_2750 IPR036968 Enolpyruvate transferase domain superfamily Thimo_2750 IPR001986 Enolpyruvate transferase domain Thimo_2750 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase Thimo_2750 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Thimo_2753 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD Thimo_2753 IPR003399 Mce/MlaD Thimo_2754 IPR030802 ABC transporter permease MalE Thimo_2754 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Thimo_2755 IPR017871 ABC transporter, conserved site Thimo_2755 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl Thimo_2755 IPR003439 ABC transporter-like Thimo_2755 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2755 IPR003593 AAA+ ATPase domain Thimo_2756 IPR000644 CBS domain Thimo_2756 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type Thimo_2756 IPR035474 KpsF-like, SIS domain Thimo_2756 IPR001347 Sugar isomerase (SIS) Thimo_2757 IPR036412 HAD-like superfamily Thimo_2757 IPR023214 HAD superfamily Thimo_2757 IPR010023 KdsC family Thimo_2760 IPR030921 LPS export ABC transporter, ATP-binding protein LptB Thimo_2760 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2760 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Thimo_2760 IPR017871 ABC transporter, conserved site Thimo_2760 IPR003593 AAA+ ATPase domain Thimo_2760 IPR003439 ABC transporter-like Thimo_2761 IPR000394 RNA polymerase sigma factor 54 Thimo_2761 IPR007046 RNA polymerase sigma factor 54, core-binding domain Thimo_2761 IPR007634 RNA polymerase sigma factor 54, DNA-binding Thimo_2761 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily Thimo_2762 IPR003489 Ribosome hibernation promoting factor/RaiA Thimo_2762 IPR036567 Ribosome hibernation promotion factor-like Thimo_2763 IPR002178 PTS EIIA type-2 domain Thimo_2763 IPR016152 Phosphotransferase/anion transporter Thimo_2763 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN Thimo_2765 IPR005337 RapZ-like family Thimo_2765 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2767 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Thimo_2767 IPR035895 HPr-like superfamily Thimo_2767 IPR000032 Phosphocarrier protein HPr-like Thimo_2767 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Thimo_2768 IPR008731 Phosphotransferase system, enzyme I N-terminal Thimo_2768 IPR006318 Phosphotransferase system, enzyme I-like Thimo_2768 IPR024692 Phosphotransferase system, enzyme I Thimo_2768 IPR040442 Pyruvate kinase-like domain superfamily Thimo_2768 IPR036637 Phosphohistidine domain superfamily Thimo_2768 IPR023151 PEP-utilising enzyme, conserved site Thimo_2768 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_2768 IPR018274 PEP-utilising enzyme, active site Thimo_2768 IPR008279 PEP-utilising enzyme, mobile domain Thimo_2768 IPR036618 PtsI, HPr-binding domain superfamily Thimo_2768 IPR000121 PEP-utilising enzyme, C-terminal Thimo_2770 IPR000014 PAS domain Thimo_2770 IPR011785 Transcription regulator PpsR Thimo_2770 IPR002197 DNA binding HTH domain, Fis-type Thimo_2770 IPR009057 Homeobox-like domain superfamily Thimo_2770 IPR035965 PAS domain superfamily Thimo_2772 IPR003672 CobN/magnesium chelatase Thimo_2772 IPR022571 Magnesium chelatase, subunit H, N-terminal Thimo_2774 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal Thimo_2774 IPR011033 PRC-barrel-like superfamily Thimo_2774 IPR005652 Photosynthetic reaction centre, H subunit Thimo_2774 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal Thimo_2774 IPR037097 Photosynthetic reaction centre, H subunit, N-terminal domain superfamily Thimo_2774 IPR027275 PRC-barrel domain Thimo_2776 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Thimo_2776 IPR000544 Octanoyltransferase Thimo_2776 IPR020605 Octanoyltransferase, conserved site Thimo_2777 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily Thimo_2777 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Thimo_2777 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A Thimo_2777 IPR015956 Penicillin-binding protein, C-terminal domain superfamily Thimo_2777 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2777 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Thimo_2778 IPR036908 RlpA-like domain superfamily Thimo_2778 IPR009009 RlpA-like protein, double-psi beta-barrel domain Thimo_2778 IPR034718 Endolytic peptidoglycan transglycosylase RlpA Thimo_2778 IPR012997 Rare lipoprotein A Thimo_2778 IPR036680 Sporulation-like domain superfamily Thimo_2778 IPR007730 Sporulation-like domain Thimo_2779 IPR023346 Lysozyme-like domain superfamily Thimo_2779 IPR011757 Lytic transglycosylase MltB Thimo_2779 IPR031304 Transglycosylase SLT domain 2 Thimo_2780 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA Thimo_2780 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site Thimo_2780 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB Thimo_2781 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2781 IPR005311 Penicillin-binding protein, dimerisation domain Thimo_2781 IPR017790 Penicillin-binding protein 2 Thimo_2781 IPR001460 Penicillin-binding protein, transpeptidase Thimo_2781 IPR036138 Penicillin-binding protein, dimerisation domain superfamily Thimo_2782 IPR007227 Cell shape-determining protein MreD Thimo_2782 IPR026034 Cell shape-determining protein MreD, proteobacterial type Thimo_2783 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 Thimo_2783 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 Thimo_2783 IPR007221 Rod shape-determining protein MreC Thimo_2784 IPR004753 Cell shape determining protein MreB Thimo_2785 IPR003837 Glu-tRNAGln amidotransferase C subunit Thimo_2785 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C Thimo_2786 IPR020556 Amidase, conserved site Thimo_2786 IPR000120 Amidase Thimo_2786 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit Thimo_2786 IPR036928 Amidase signature (AS) superfamily Thimo_2786 IPR023631 Amidase signature domain Thimo_2787 IPR018027 Asn/Gln amidotransferase Thimo_2787 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 Thimo_2787 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 Thimo_2787 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit Thimo_2787 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E Thimo_2787 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic Thimo_2787 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like Thimo_2787 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site Thimo_2787 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Thimo_2790 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN Thimo_2790 IPR034505 Anaerobic coproporphyrinogen-III oxidase Thimo_2790 IPR006638 Elp3/MiaB/NifB Thimo_2790 IPR010723 HemN, C-terminal Thimo_2790 IPR007197 Radical SAM Thimo_2790 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_2791 IPR010249 Bacteriochlorophyll 4-vinyl reductase Thimo_2791 IPR004096 4-vinyl reductase, 4VR Thimo_2791 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily Thimo_2792 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2792 IPR023545 rRNA small subunit methyltransferase F Thimo_2792 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_2792 IPR011023 Nop2p Thimo_2792 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain Thimo_2792 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type Thimo_2792 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Thimo_2792 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site Thimo_2793 IPR011761 ATP-grasp fold Thimo_2793 IPR013651 ATP-grasp fold, RimK-type Thimo_2793 IPR013815 ATP-grasp fold, subdomain 1 Thimo_2793 IPR006037 Regulator of K+ conductance, C-terminal Thimo_2793 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Thimo_2793 IPR041107 RimK, PreATP-grasp domain Thimo_2793 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX Thimo_2795 IPR002933 Peptidase M20 Thimo_2795 IPR036264 Bacterial exopeptidase dimerisation domain Thimo_2795 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Thimo_2795 IPR011650 Peptidase M20, dimerisation domain Thimo_2795 IPR010169 Acetylornithine deacetylase ArgE Thimo_2796 IPR035647 EF-G domain III/V-like Thimo_2796 IPR005517 Translation elongation factor EFG/EF2, domain IV Thimo_2796 IPR041095 Elongation Factor G, domain II Thimo_2796 IPR035649 EFG, domain V Thimo_2796 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2796 IPR000795 Transcription factor, GTP-binding domain Thimo_2796 IPR005225 Small GTP-binding protein domain Thimo_2796 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2796 IPR004540 Translation elongation factor EFG/EF2 Thimo_2796 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2796 IPR009022 Elongation factor G, domain III Thimo_2796 IPR000640 Elongation factor EFG, domain V-like Thimo_2796 IPR004161 Translation elongation factor EFTu-like, domain 2 Thimo_2796 IPR031157 Tr-type G domain, conserved site Thimo_2796 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2800 IPR002898 MotA/TolQ/ExbB proton channel Thimo_2805 IPR000522 ABC transporter, permease protein, BtuC-like Thimo_2805 IPR037294 ABC transporter, BtuC-like Thimo_2807 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2807 IPR003593 AAA+ ATPase domain Thimo_2807 IPR017871 ABC transporter, conserved site Thimo_2807 IPR003439 ABC transporter-like Thimo_2808 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal Thimo_2808 IPR036422 RuBisCO large subunit, N-terminal domain superfamily Thimo_2808 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily Thimo_2808 IPR033966 RuBisCO Thimo_2809 IPR009056 Cytochrome c-like domain Thimo_2809 IPR024167 Cytochrome c4-like Thimo_2809 IPR036909 Cytochrome c-like domain superfamily Thimo_2810 IPR024167 Cytochrome c4-like Thimo_2810 IPR009056 Cytochrome c-like domain Thimo_2810 IPR036909 Cytochrome c-like domain superfamily Thimo_2812 IPR011031 Multihaem cytochrome Thimo_2812 IPR036280 Multiheme cytochrome superfamily Thimo_2812 IPR010177 Doubled CXXCH motif Thimo_2812 IPR020015 Decaheme cytochrome, c-type, DmsE Thimo_2814 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Thimo_2814 IPR013321 Arc-type ribbon-helix-helix Thimo_2814 IPR002145 Ribbon-helix-helix protein, CopG Thimo_2814 IPR014864 Transcription factor, NikR, nickel binding C-terminal Thimo_2814 IPR010985 Ribbon-helix-helix Thimo_2814 IPR022988 Nickel-responsive transcriptional regulator NikR Thimo_2815 IPR035919 EAL domain superfamily Thimo_2815 IPR000160 GGDEF domain Thimo_2815 IPR001633 EAL domain Thimo_2815 IPR029787 Nucleotide cyclase Thimo_2815 IPR005330 MHYT domain Thimo_2816 IPR035965 PAS domain superfamily Thimo_2816 IPR000014 PAS domain Thimo_2816 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_2816 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase Thimo_2816 IPR000780 MCP methyltransferase, CheR-type Thimo_2816 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_2816 IPR035909 Methylesterase CheB, C-terminal Thimo_2816 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2816 IPR013656 PAS fold-4 Thimo_2817 IPR029787 Nucleotide cyclase Thimo_2817 IPR011006 CheY-like superfamily Thimo_2817 IPR000160 GGDEF domain Thimo_2817 IPR001789 Signal transduction response regulator, receiver domain Thimo_2818 IPR006158 Cobalamin (vitamin B12)-binding domain Thimo_2818 IPR036724 Cobalamin-binding domain superfamily Thimo_2818 IPR009061 Putative DNA-binding domain superfamily Thimo_2818 IPR000551 MerR-type HTH domain Thimo_2818 IPR036594 Methionine synthase domain Thimo_2818 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Thimo_2819 IPR006244 Photosystem I PsaB Thimo_2819 IPR036408 Photosystem I PsaA/PsaB superfamily Thimo_2819 IPR020586 Photosystem I PsaA/PsaB, conserved site Thimo_2819 IPR001280 Photosystem I PsaA/PsaB Thimo_2819 IPR036737 OmpA-like domain superfamily Thimo_2819 IPR006665 OmpA-like domain Thimo_2819 IPR006664 Outer membrane protein, bacterial Thimo_2820 IPR039421 Type I protein exporter Thimo_2820 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_2820 IPR003439 ABC transporter-like Thimo_2820 IPR017871 ABC transporter, conserved site Thimo_2820 IPR011917 ABC transporter, lipid A export, MsbA Thimo_2820 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2820 IPR011527 ABC transporter type 1, transmembrane domain Thimo_2820 IPR003593 AAA+ ATPase domain Thimo_2821 IPR000551 MerR-type HTH domain Thimo_2821 IPR009061 Putative DNA-binding domain superfamily Thimo_2822 IPR005684 Integration host factor, alpha subunit Thimo_2822 IPR020816 Histone-like DNA-binding protein, conserved site Thimo_2822 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Thimo_2822 IPR000119 Histone-like DNA-binding protein Thimo_2823 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit Thimo_2823 IPR009061 Putative DNA-binding domain superfamily Thimo_2823 IPR005146 B3/B4 tRNA-binding domain Thimo_2823 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain Thimo_2823 IPR012340 Nucleic acid-binding, OB-fold Thimo_2823 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily Thimo_2823 IPR005121 Ferrodoxin-fold anticodon-binding domain Thimo_2823 IPR002547 tRNA-binding domain Thimo_2823 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Thimo_2823 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain Thimo_2823 IPR005147 tRNA synthetase, B5-domain Thimo_2824 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Thimo_2824 IPR002319 Phenylalanyl-tRNA synthetase Thimo_2824 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial Thimo_2824 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal Thimo_2824 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_2824 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit Thimo_2825 IPR035566 Ribosomal protein L20, C-terminal Thimo_2825 IPR005813 Ribosomal protein L20 Thimo_2826 IPR037229 Ribosomal protein L35 superfamily Thimo_2826 IPR001706 Ribosomal protein L35, non-mitochondrial Thimo_2826 IPR021137 Ribosomal protein L35 Thimo_2826 IPR018265 Ribosomal protein L35, conserved site Thimo_2827 IPR019814 Translation initiation factor 3, N-terminal Thimo_2827 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily Thimo_2827 IPR019815 Translation initiation factor 3, C-terminal Thimo_2827 IPR001288 Translation initiation factor 3 Thimo_2827 IPR019813 Translation initiation factor 3, conserved site Thimo_2827 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily Thimo_2828 IPR012947 Threonyl/alanyl tRNA synthetase, SAD Thimo_2828 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Thimo_2828 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_2828 IPR033728 Threonine-tRNA ligase catalytic core domain Thimo_2828 IPR036621 Anticodon-binding domain superfamily Thimo_2828 IPR012675 Beta-grasp domain superfamily Thimo_2828 IPR004095 TGS Thimo_2828 IPR012676 TGS-like Thimo_2828 IPR002320 Threonine-tRNA ligase, class IIa Thimo_2828 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily Thimo_2828 IPR004154 Anticodon-binding Thimo_2830 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain Thimo_2830 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain Thimo_2830 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily Thimo_2830 IPR011167 Iron-dependent fumarate hydratase Thimo_2830 IPR020557 Fumarate lyase, conserved site Thimo_2831 IPR011032 GroES-like superfamily Thimo_2831 IPR036291 NAD(P)-binding domain superfamily Thimo_2831 IPR014188 Acrylyl-CoA reductase AcuI Thimo_2831 IPR013149 Alcohol dehydrogenase, C-terminal Thimo_2831 IPR013154 Alcohol dehydrogenase, N-terminal Thimo_2831 IPR020843 Polyketide synthase, enoylreductase domain Thimo_2833 IPR036373 Ribosomal protein L17 superfamily Thimo_2833 IPR000456 Ribosomal protein L17 Thimo_2834 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type Thimo_2834 IPR011773 DNA-directed RNA polymerase, alpha subunit Thimo_2834 IPR036603 RNA polymerase, RBP11-like subunit Thimo_2834 IPR011260 RNA polymerase, alpha subunit, C-terminal Thimo_2834 IPR011262 DNA-directed RNA polymerase, insert domain Thimo_2834 IPR036643 DNA-directed RNA polymerase, insert domain superfamily Thimo_2835 IPR005709 Ribosomal protein S4, bacterial-type Thimo_2835 IPR018079 Ribosomal protein S4, conserved site Thimo_2835 IPR002942 RNA-binding S4 domain Thimo_2835 IPR036986 RNA-binding S4 domain superfamily Thimo_2835 IPR022801 Ribosomal protein S4/S9 Thimo_2835 IPR001912 Ribosomal protein S4/S9, N-terminal Thimo_2836 IPR001971 Ribosomal protein S11 Thimo_2836 IPR036967 Ribosomal protein S11 superfamily Thimo_2836 IPR018102 Ribosomal S11, conserved site Thimo_2836 IPR019981 Ribosomal protein S11, bacterial-type Thimo_2837 IPR010979 Ribosomal protein S13-like, H2TH Thimo_2837 IPR001892 Ribosomal protein S13 Thimo_2837 IPR027437 30s ribosomal protein S13, C-terminal Thimo_2837 IPR018269 Ribosomal protein S13, conserved site Thimo_2837 IPR019980 Ribosomal protein S13, bacterial-type Thimo_2839 IPR000473 Ribosomal protein L36 Thimo_2839 IPR035977 Ribosomal protein L36 superfamily Thimo_2840 IPR026593 Protein translocase subunit SecY Thimo_2840 IPR023201 SecY domain superfamily Thimo_2840 IPR030659 SecY conserved site Thimo_2840 IPR002208 SecY/SEC61-alpha family Thimo_2842 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Thimo_2842 IPR005996 Ribosomal protein L30, bacterial-type Thimo_2842 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Thimo_2843 IPR000851 Ribosomal protein S5 Thimo_2843 IPR005712 Ribosomal protein S5, bacterial-type Thimo_2843 IPR005324 Ribosomal protein S5, C-terminal Thimo_2843 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2843 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2843 IPR013810 Ribosomal protein S5, N-terminal Thimo_2843 IPR018192 Ribosomal protein S5, N-terminal, conserved site Thimo_2844 IPR005484 Ribosomal protein L18 Thimo_2844 IPR004389 Ribosomal protein L18, bacterial-type Thimo_2845 IPR002358 Ribosomal protein L6, conserved site Thimo_2845 IPR019906 Ribosomal protein L6, bacterial-type Thimo_2845 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily Thimo_2845 IPR020040 Ribosomal protein L6, alpha-beta domain Thimo_2845 IPR000702 Ribosomal protein L6 Thimo_2846 IPR000630 Ribosomal protein S8 Thimo_2846 IPR035987 Ribosomal protein S8 superfamily Thimo_2847 IPR018271 Ribosomal protein S14, conserved site Thimo_2847 IPR023036 Ribosomal protein S14, bacterial/plastid Thimo_2847 IPR001209 Ribosomal protein S14 Thimo_2848 IPR002132 Ribosomal protein L5 Thimo_2848 IPR022803 Ribosomal protein L5 domain superfamily Thimo_2848 IPR020929 Ribosomal protein L5, conserved site Thimo_2848 IPR031309 Ribosomal protein L5, C-terminal Thimo_2848 IPR020930 Ribosomal protein L5, bacterial-type Thimo_2848 IPR031310 Ribosomal protein L5, N-terminal Thimo_2849 IPR014722 Ribosomal protein L2, domain 2 Thimo_2849 IPR041988 Ribosomal Protein L26/L24, KOW domain Thimo_2849 IPR005824 KOW Thimo_2849 IPR003256 Ribosomal protein L24 Thimo_2849 IPR008991 Translation protein SH3-like domain superfamily Thimo_2850 IPR000218 Ribosomal protein L14P Thimo_2850 IPR005745 Ribosomal protein L14P, bacterial-type Thimo_2850 IPR036853 Ribosomal protein L14 superfamily Thimo_2850 IPR019972 Ribosomal protein L14P, conserved site Thimo_2851 IPR000266 Ribosomal protein S17/S11 Thimo_2851 IPR019984 30S ribosomal protein S17 Thimo_2851 IPR012340 Nucleic acid-binding, OB-fold Thimo_2852 IPR036049 Ribosomal protein L29/L35 superfamily Thimo_2852 IPR018254 Ribosomal protein L29, conserved site Thimo_2852 IPR001854 Ribosomal protein L29/L35 Thimo_2853 IPR020798 Ribosomal protein L16, conserved site Thimo_2853 IPR000114 Ribosomal protein L16 Thimo_2853 IPR036920 Ribosomal protein L10e/L16 superfamily Thimo_2853 IPR016180 Ribosomal protein L10e/L16 Thimo_2854 IPR018280 Ribosomal protein S3, conserved site Thimo_2854 IPR015946 K homology domain-like, alpha/beta Thimo_2854 IPR004044 K Homology domain, type 2 Thimo_2854 IPR009019 K homology domain superfamily, prokaryotic type Thimo_2854 IPR004087 K Homology domain Thimo_2854 IPR005704 Ribosomal protein S3, bacterial-type Thimo_2854 IPR001351 Ribosomal protein S3, C-terminal Thimo_2854 IPR036419 Ribosomal protein S3, C-terminal domain superfamily Thimo_2855 IPR001063 Ribosomal protein L22/L17 Thimo_2855 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type Thimo_2855 IPR036394 Ribosomal protein L22/L17 superfamily Thimo_2855 IPR018260 Ribosomal protein L22/L17, conserved site Thimo_2856 IPR002222 Ribosomal protein S19/S15 Thimo_2856 IPR005732 Ribosomal protein S19, bacterial-type Thimo_2856 IPR020934 Ribosomal protein S19 conserved site Thimo_2856 IPR023575 Ribosomal protein S19, superfamily Thimo_2857 IPR014722 Ribosomal protein L2, domain 2 Thimo_2857 IPR022666 Ribosomal Proteins L2, RNA binding domain Thimo_2857 IPR008991 Translation protein SH3-like domain superfamily Thimo_2857 IPR012340 Nucleic acid-binding, OB-fold Thimo_2857 IPR002171 Ribosomal protein L2 Thimo_2857 IPR014726 Ribosomal protein L2, domain 3 Thimo_2857 IPR022671 Ribosomal protein L2, conserved site Thimo_2857 IPR022669 Ribosomal protein L2, C-terminal Thimo_2857 IPR005880 Ribosomal protein L2, bacterial/organellar-type Thimo_2858 IPR013025 Ribosomal protein L25/L23 Thimo_2858 IPR012678 Ribosomal protein L23/L15e core domain superfamily Thimo_2858 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_2859 IPR002136 Ribosomal protein L4/L1e Thimo_2859 IPR023574 Ribosomal protein L4 domain superfamily Thimo_2859 IPR013005 50S ribosomal protein uL4 Thimo_2860 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2860 IPR019926 Ribosomal protein L3, conserved site Thimo_2860 IPR019927 Ribosomal protein L3, bacterial/organelle-type Thimo_2860 IPR000597 Ribosomal protein L3 Thimo_2861 IPR036838 Ribosomal protein S10 domain superfamily Thimo_2861 IPR027486 Ribosomal protein S10 domain Thimo_2861 IPR001848 Ribosomal protein S10 Thimo_2862 IPR004161 Translation elongation factor EFTu-like, domain 2 Thimo_2862 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle Thimo_2862 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Thimo_2862 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2862 IPR000795 Transcription factor, GTP-binding domain Thimo_2862 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Thimo_2862 IPR005225 Small GTP-binding protein domain Thimo_2862 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2862 IPR031157 Tr-type G domain, conserved site Thimo_2862 IPR033720 Elongation factor Tu, domain 2 Thimo_2862 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain Thimo_2863 IPR000795 Transcription factor, GTP-binding domain Thimo_2863 IPR005225 Small GTP-binding protein domain Thimo_2863 IPR004540 Translation elongation factor EFG/EF2 Thimo_2863 IPR005517 Translation elongation factor EFG/EF2, domain IV Thimo_2863 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2863 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2863 IPR000640 Elongation factor EFG, domain V-like Thimo_2863 IPR035649 EFG, domain V Thimo_2863 IPR009022 Elongation factor G, domain III Thimo_2863 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2863 IPR035647 EF-G domain III/V-like Thimo_2863 IPR031157 Tr-type G domain, conserved site Thimo_2863 IPR004161 Translation elongation factor EFTu-like, domain 2 Thimo_2863 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2863 IPR041095 Elongation Factor G, domain II Thimo_2864 IPR000235 Ribosomal protein S5/S7 Thimo_2864 IPR036823 Ribosomal protein S7 domain superfamily Thimo_2864 IPR023798 Ribosomal protein S7 domain Thimo_2864 IPR005717 Ribosomal protein S7, bacterial/organellar-type Thimo_2865 IPR005679 Ribosomal protein S12, bacterial-type Thimo_2865 IPR012340 Nucleic acid-binding, OB-fold Thimo_2865 IPR006032 Ribosomal protein S12/S23 Thimo_2866 IPR038120 RNA polymerase Rpb1, funnel domain superfamily Thimo_2866 IPR007083 RNA polymerase Rpb1, domain 4 Thimo_2866 IPR007081 RNA polymerase Rpb1, domain 5 Thimo_2866 IPR007066 RNA polymerase Rpb1, domain 3 Thimo_2866 IPR007080 RNA polymerase Rpb1, domain 1 Thimo_2866 IPR006592 RNA polymerase, N-terminal Thimo_2866 IPR000722 RNA polymerase, alpha subunit Thimo_2866 IPR012754 DNA-directed RNA polymerase, subunit beta-prime Thimo_2866 IPR042102 RNA polymerase Rpb1, domain 3 superfamily Thimo_2867 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain Thimo_2867 IPR014724 RNA polymerase Rpb2, OB-fold Thimo_2867 IPR007642 RNA polymerase Rpb2, domain 2 Thimo_2867 IPR007645 RNA polymerase Rpb2, domain 3 Thimo_2867 IPR037034 RNA polymerase Rpb2, domain 2 superfamily Thimo_2867 IPR015712 DNA-directed RNA polymerase, subunit 2 Thimo_2867 IPR007121 RNA polymerase, beta subunit, conserved site Thimo_2867 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type Thimo_2867 IPR007641 RNA polymerase Rpb2, domain 7 Thimo_2867 IPR007644 RNA polymerase, beta subunit, protrusion Thimo_2867 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain Thimo_2867 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily Thimo_2867 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily Thimo_2868 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily Thimo_2868 IPR008932 Ribosomal protein L7/L12, oligomerisation Thimo_2868 IPR013823 Ribosomal protein L7/L12, C-terminal Thimo_2868 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Thimo_2868 IPR000206 Ribosomal protein L7/L12 Thimo_2869 IPR022973 Ribosomal protein L10 Thimo_2869 IPR002363 Ribosomal protein L10, eubacterial, conserved site Thimo_2869 IPR001790 Ribosomal protein L10P Thimo_2870 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Thimo_2870 IPR005878 Ribosomal protein L1, bacterial-type Thimo_2870 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Thimo_2870 IPR002143 Ribosomal protein L1 Thimo_2870 IPR023674 Ribosomal protein L1-like Thimo_2870 IPR023673 Ribosomal protein L1, conserved site Thimo_2871 IPR000911 Ribosomal protein L11/L12 Thimo_2871 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Thimo_2871 IPR006519 Ribosomal protein L11, bacterial-type Thimo_2871 IPR020783 Ribosomal protein L11, C-terminal Thimo_2871 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Thimo_2871 IPR020784 Ribosomal protein L11, N-terminal Thimo_2871 IPR020785 Ribosomal protein L11, conserved site Thimo_2872 IPR008991 Translation protein SH3-like domain superfamily Thimo_2872 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Thimo_2872 IPR001062 Transcription antitermination protein, NusG Thimo_2872 IPR036735 NusG, N-terminal domain superfamily Thimo_2872 IPR005824 KOW Thimo_2872 IPR014722 Ribosomal protein L2, domain 2 Thimo_2872 IPR006645 NusG, N-terminal Thimo_2873 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit Thimo_2873 IPR038379 SecE superfamily Thimo_2873 IPR005807 SecE subunit of protein translocation complex, bacterial-like Thimo_2875 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Thimo_2875 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle Thimo_2875 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Thimo_2875 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain Thimo_2875 IPR005225 Small GTP-binding protein domain Thimo_2875 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2875 IPR031157 Tr-type G domain, conserved site Thimo_2875 IPR033720 Elongation factor Tu, domain 2 Thimo_2875 IPR004161 Translation elongation factor EFTu-like, domain 2 Thimo_2875 IPR000795 Transcription factor, GTP-binding domain Thimo_2875 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2879 IPR036291 NAD(P)-binding domain superfamily Thimo_2879 IPR017476 UDP-glucose/GDP-mannose dehydrogenase Thimo_2879 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Thimo_2879 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Thimo_2879 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Thimo_2879 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Thimo_2879 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type Thimo_2879 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_2883 IPR036322 WD40-repeat-containing domain superfamily Thimo_2883 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Thimo_2883 IPR020472 G-protein beta WD-40 repeat Thimo_2883 IPR017986 WD40-repeat-containing domain Thimo_2883 IPR019775 WD40 repeat, conserved site Thimo_2883 IPR001680 WD40 repeat Thimo_2883 IPR038765 Papain-like cysteine peptidase superfamily Thimo_2883 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2883 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain Thimo_2883 IPR029030 Caspase-like domain superfamily Thimo_2885 IPR002686 Transposase IS200-like Thimo_2885 IPR036515 Transposase IS200-like superfamily Thimo_2887 IPR020472 G-protein beta WD-40 repeat Thimo_2887 IPR036322 WD40-repeat-containing domain superfamily Thimo_2887 IPR038765 Papain-like cysteine peptidase superfamily Thimo_2887 IPR017986 WD40-repeat-containing domain Thimo_2887 IPR019775 WD40 repeat, conserved site Thimo_2887 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2887 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Thimo_2887 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain Thimo_2887 IPR029030 Caspase-like domain superfamily Thimo_2887 IPR001680 WD40 repeat Thimo_2888 IPR011530 Ribosomal RNA adenine dimethylase Thimo_2888 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal Thimo_2888 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site Thimo_2888 IPR023165 rRNA adenine dimethylase-like Thimo_2888 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Thimo_2888 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2889 IPR004815 Lon protease, bacterial/eukaryotic-type Thimo_2889 IPR003593 AAA+ ATPase domain Thimo_2889 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2889 IPR015947 PUA-like superfamily Thimo_2889 IPR008268 Peptidase S16, active site Thimo_2889 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2889 IPR003111 Lon, substrate-binding domain Thimo_2889 IPR027065 Lon protease Thimo_2889 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2889 IPR008269 Peptidase S16, Lon proteolytic domain Thimo_2889 IPR003959 ATPase, AAA-type, core Thimo_2889 IPR027543 Lon protease, bacterial Thimo_2890 IPR012349 FMN-binding split barrel Thimo_2890 IPR002563 Flavin reductase like domain Thimo_2890 IPR001279 Metallo-beta-lactamase Thimo_2890 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_2890 IPR008254 Flavodoxin/nitric oxide synthase Thimo_2890 IPR001226 Flavodoxin, conserved site Thimo_2890 IPR029039 Flavoprotein-like superfamily Thimo_2891 IPR015793 Pyruvate kinase, barrel Thimo_2891 IPR015795 Pyruvate kinase, C-terminal Thimo_2891 IPR001697 Pyruvate kinase Thimo_2891 IPR036918 Pyruvate kinase, C-terminal domain superfamily Thimo_2891 IPR018209 Pyruvate kinase, active site Thimo_2891 IPR011037 Pyruvate kinase-like, insert domain superfamily Thimo_2891 IPR036637 Phosphohistidine domain superfamily Thimo_2891 IPR015806 Pyruvate kinase, insert domain superfamily Thimo_2891 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_2891 IPR040442 Pyruvate kinase-like domain superfamily Thimo_2891 IPR008279 PEP-utilising enzyme, mobile domain Thimo_2892 IPR029058 Alpha/Beta hydrolase fold Thimo_2892 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2900 IPR023299 P-type ATPase, cytoplasmic domain N Thimo_2900 IPR001757 P-type ATPase Thimo_2900 IPR027256 P-type ATPase, subfamily IB Thimo_2900 IPR018303 P-type ATPase, phosphorylation site Thimo_2900 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_2900 IPR008250 P-type ATPase, A domain superfamily Thimo_2900 IPR036412 HAD-like superfamily Thimo_2900 IPR023214 HAD superfamily Thimo_2900 IPR006121 Heavy metal-associated domain, HMA Thimo_2900 IPR006122 Heavy metal-associated domain, copper ion-binding Thimo_2900 IPR036163 Heavy metal-associated domain superfamily Thimo_2900 IPR017969 Heavy-metal-associated, conserved site Thimo_2903 IPR036515 Transposase IS200-like superfamily Thimo_2903 IPR002686 Transposase IS200-like Thimo_2907 IPR011812 Biosynthetic peptidoglycan transglycosylase Thimo_2907 IPR036950 Penicillin binding protein transglycosylase domain Thimo_2907 IPR023346 Lysozyme-like domain superfamily Thimo_2907 IPR001264 Glycosyl transferase, family 51 Thimo_2915 IPR024953 Polyphosphate kinase middle domain Thimo_2915 IPR036830 Polyphosphate kinase middle domain superfamily Thimo_2915 IPR025200 Polyphosphate kinase C-terminal domain 2 Thimo_2915 IPR025198 Polyphosphate kinase N-terminal domain Thimo_2915 IPR036832 Polyphosphate kinase N-terminal domain superfamily Thimo_2915 IPR003414 Polyphosphate kinase Thimo_2915 IPR041108 Polyphosphate kinase, C-terminal domain 1 Thimo_2916 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2916 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2916 IPR007432 Protein of unknown function DUF480 Thimo_2917 IPR003848 Domain of unknown function DUF218 Thimo_2920 IPR023346 Lysozyme-like domain superfamily Thimo_2920 IPR023703 Membrane-bound lytic murein transglycosylase F Thimo_2920 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_2920 IPR000189 Prokaryotic transglycosylase, active site Thimo_2920 IPR008258 Transglycosylase SLT domain 1 Thimo_2921 IPR001633 EAL domain Thimo_2921 IPR029787 Nucleotide cyclase Thimo_2921 IPR035919 EAL domain superfamily Thimo_2921 IPR000160 GGDEF domain Thimo_2921 IPR005330 MHYT domain Thimo_2930 IPR024163 Aerotolerance regulator, N-terminal Thimo_2930 IPR002035 von Willebrand factor, type A Thimo_2930 IPR022933 Uncharacterised protein family UPF0353 Thimo_2930 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2934 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2934 IPR011703 ATPase, AAA-3 Thimo_2934 IPR041628 ChlI/MoxR, AAA lid domain Thimo_2935 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase Thimo_2935 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2940 IPR006690 Outer membrane protein, OmpA-like, conserved site Thimo_2940 IPR006665 OmpA-like domain Thimo_2940 IPR006664 Outer membrane protein, bacterial Thimo_2940 IPR039567 Glycine zipper domain Thimo_2940 IPR036737 OmpA-like domain superfamily Thimo_2944 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2944 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2944 IPR000847 Transcription regulator HTH, LysR Thimo_2944 IPR005119 LysR, substrate-binding Thimo_2945 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Thimo_2945 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_2946 IPR018752 Uncharacterised protein family UPF0753 Thimo_2947 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal Thimo_2947 IPR033966 RuBisCO Thimo_2947 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site Thimo_2947 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal Thimo_2947 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily Thimo_2947 IPR036422 RuBisCO large subunit, N-terminal domain superfamily Thimo_2947 IPR020888 Ribulose bisphosphate carboxylase large subunit, type I Thimo_2948 IPR000894 Ribulose bisphosphate carboxylase small chain, domain Thimo_2948 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily Thimo_2958 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2958 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2958 IPR000847 Transcription regulator HTH, LysR Thimo_2958 IPR005119 LysR, substrate-binding Thimo_2962 IPR003439 ABC transporter-like Thimo_2962 IPR039421 Type I protein exporter Thimo_2962 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2962 IPR017871 ABC transporter, conserved site Thimo_2962 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_2962 IPR011527 ABC transporter type 1, transmembrane domain Thimo_2962 IPR003593 AAA+ ATPase domain Thimo_2964 IPR014524 Outer membrane protein assembly factor BamC Thimo_2964 IPR042268 Outer membrane protein assembly factor BamC, C-terminal Thimo_2964 IPR010653 NlpB/DapX lipoprotein Thimo_2965 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA Thimo_2965 IPR020624 Schiff base-forming aldolase, conserved site Thimo_2965 IPR020625 Schiff base-forming aldolase, active site Thimo_2965 IPR002220 DapA-like Thimo_2965 IPR013785 Aldolase-type TIM barrel Thimo_2966 IPR002912 ACT domain Thimo_2966 IPR016867 Glycine cleavage system transcriptional repressor Thimo_2967 IPR036249 Thioredoxin-like superfamily Thimo_2967 IPR013766 Thioredoxin domain Thimo_2967 IPR024706 Peroxiredoxin, AhpC-type Thimo_2967 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant Thimo_2968 IPR002716 PIN domain Thimo_2968 IPR029060 PIN-like domain superfamily Thimo_2968 IPR003714 PhoH-like protein Thimo_2968 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2969 IPR017937 Thioredoxin, conserved site Thimo_2969 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL Thimo_2969 IPR013766 Thioredoxin domain Thimo_2969 IPR001853 DSBA-like thioredoxin domain Thimo_2969 IPR036249 Thioredoxin-like superfamily Thimo_2970 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Thimo_2970 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Thimo_2971 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2971 IPR018317 Queuosine biosynthesis protein QueC Thimo_2972 IPR029903 RmlD-like substrate binding domain Thimo_2972 IPR036291 NAD(P)-binding domain superfamily Thimo_2972 IPR005913 dTDP-4-dehydrorhamnose reductase family Thimo_2974 IPR012340 Nucleic acid-binding, OB-fold Thimo_2974 IPR011344 Single-stranded DNA-binding protein Thimo_2974 IPR000424 Primosome PriB/single-strand DNA-binding Thimo_2975 IPR036259 MFS transporter superfamily Thimo_2975 IPR020846 Major facilitator superfamily domain Thimo_2975 IPR011701 Major facilitator superfamily Thimo_2976 IPR002327 Cytochrome c, class IA/ IB Thimo_2976 IPR009056 Cytochrome c-like domain Thimo_2976 IPR036909 Cytochrome c-like domain superfamily Thimo_2982 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal Thimo_2982 IPR023753 FAD/NAD(P)-binding domain Thimo_2982 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2982 IPR013785 Aldolase-type TIM barrel Thimo_2985 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Thimo_2985 IPR003593 AAA+ ATPase domain Thimo_2985 IPR003439 ABC transporter-like Thimo_2985 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2985 IPR017871 ABC transporter, conserved site Thimo_2987 IPR002361 Antenna complex, alpha subunit conserved site Thimo_2987 IPR018332 Antenna complex, alpha subunit Thimo_2987 IPR035889 Light-harvesting complex Thimo_2987 IPR000066 Antenna complex, alpha/beta subunit Thimo_2988 IPR002362 Antenna complex, beta subunit Thimo_2988 IPR035889 Light-harvesting complex Thimo_2988 IPR023623 Antenna complex, beta subunit, conserved site Thimo_2988 IPR000066 Antenna complex, alpha/beta subunit Thimo_2991 IPR002362 Antenna complex, beta subunit Thimo_2991 IPR035889 Light-harvesting complex Thimo_2991 IPR023623 Antenna complex, beta subunit, conserved site Thimo_2991 IPR000066 Antenna complex, alpha/beta subunit Thimo_2992 IPR035889 Light-harvesting complex Thimo_2992 IPR000066 Antenna complex, alpha/beta subunit Thimo_2992 IPR018332 Antenna complex, alpha subunit Thimo_2992 IPR002361 Antenna complex, alpha subunit conserved site Thimo_2993 IPR035889 Light-harvesting complex Thimo_2993 IPR000066 Antenna complex, alpha/beta subunit Thimo_2993 IPR023623 Antenna complex, beta subunit, conserved site Thimo_2993 IPR002362 Antenna complex, beta subunit Thimo_2995 IPR000066 Antenna complex, alpha/beta subunit Thimo_2995 IPR002362 Antenna complex, beta subunit Thimo_2995 IPR023623 Antenna complex, beta subunit, conserved site Thimo_2995 IPR035889 Light-harvesting complex Thimo_2996 IPR036280 Multiheme cytochrome superfamily Thimo_2996 IPR011031 Multihaem cytochrome Thimo_2996 IPR023119 Multihaem cytochrome, PRC subunit superfamily Thimo_2996 IPR003158 Photosynthetic reaction centre, cytochrome c subunit Thimo_2997 IPR000484 Photosynthetic reaction centre, L/M Thimo_2997 IPR005781 Photosynthetic reaction centre, M subunit Thimo_2997 IPR036854 Photosystem II protein D1/D2 superfamily Thimo_2998 IPR036854 Photosystem II protein D1/D2 superfamily Thimo_2998 IPR005871 Photosynthetic reaction centre, L subunit Thimo_2998 IPR000484 Photosynthetic reaction centre, L/M Thimo_3000 IPR000066 Antenna complex, alpha/beta subunit Thimo_3000 IPR002362 Antenna complex, beta subunit Thimo_3000 IPR023623 Antenna complex, beta subunit, conserved site Thimo_3000 IPR035889 Light-harvesting complex Thimo_3001 IPR002361 Antenna complex, alpha subunit conserved site Thimo_3001 IPR035889 Light-harvesting complex Thimo_3001 IPR000066 Antenna complex, alpha/beta subunit Thimo_3001 IPR018332 Antenna complex, alpha subunit Thimo_3002 IPR035889 Light-harvesting complex Thimo_3002 IPR023623 Antenna complex, beta subunit, conserved site Thimo_3002 IPR002362 Antenna complex, beta subunit Thimo_3002 IPR000066 Antenna complex, alpha/beta subunit Thimo_3003 IPR010244 Chlorophyllide reductase subunit Z Thimo_3003 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3003 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal Thimo_3003 IPR016209 Protochlorophyllide reductase, ChlB, light independent Thimo_3004 IPR010245 Chlorophyllide reductase subunit Y Thimo_3004 IPR016209 Protochlorophyllide reductase, ChlB, light independent Thimo_3004 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3005 IPR010246 Chlorophyllide reductase iron protein subunit X Thimo_3005 IPR030655 NifH/chlL conserved site Thimo_3005 IPR000392 NifH/frxC family Thimo_3005 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3006 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase Thimo_3006 IPR011032 GroES-like superfamily Thimo_3006 IPR036291 NAD(P)-binding domain superfamily Thimo_3007 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3007 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3007 IPR001077 O-methyltransferase domain Thimo_3007 IPR016461 O-methyltransferase COMT-type Thimo_3007 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain Thimo_3008 IPR008949 Isoprenoid synthase domain superfamily Thimo_3008 IPR000092 Polyprenyl synthetase Thimo_3008 IPR033749 Polyprenyl synthetase, conserved site Thimo_3009 IPR014105 Carotenoid/retinoid oxidoreductase Thimo_3009 IPR002937 Amine oxidase Thimo_3009 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3011 IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head Thimo_3011 IPR008949 Isoprenoid synthase domain superfamily Thimo_3011 IPR002060 Squalene/phytoene synthase Thimo_3011 IPR019845 Squalene/phytoene synthase, conserved site Thimo_3012 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site Thimo_3012 IPR002937 Amine oxidase Thimo_3012 IPR014105 Carotenoid/retinoid oxidoreductase Thimo_3012 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3013 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase Thimo_3013 IPR029058 Alpha/Beta hydrolase fold Thimo_3013 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3014 IPR041628 ChlI/MoxR, AAA lid domain Thimo_3014 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3014 IPR011776 Magnesium chelatase, ATPase subunit D Thimo_3014 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3014 IPR002035 von Willebrand factor, type A Thimo_3015 IPR003593 AAA+ ATPase domain Thimo_3015 IPR041628 ChlI/MoxR, AAA lid domain Thimo_3015 IPR011775 Magnesium chelatase, ATPase subunit I Thimo_3015 IPR000523 Magnesium chelatase ChlI domain Thimo_3015 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3016 IPR017496 Photosynthetic complex assembly protein 2, putative Thimo_3018 IPR005182 Domain of unknown function DUF304 Thimo_3019 IPR005652 Photosynthetic reaction centre, H subunit Thimo_3019 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal Thimo_3019 IPR037097 Photosynthetic reaction centre, H subunit, N-terminal domain superfamily Thimo_3019 IPR027275 PRC-barrel domain Thimo_3019 IPR011033 PRC-barrel-like superfamily Thimo_3019 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal Thimo_3020 IPR036259 MFS transporter superfamily Thimo_3020 IPR004896 PucC-related Thimo_3020 IPR026036 PucC protein Thimo_3021 IPR007848 Methyltransferase small domain Thimo_3021 IPR010251 Magnesium-protoporphyrin IX methyltransferase Thimo_3021 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3021 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal Thimo_3022 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein Thimo_3022 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3022 IPR000392 NifH/frxC family Thimo_3022 IPR030655 NifH/chlL conserved site Thimo_3023 IPR022571 Magnesium chelatase, subunit H, N-terminal Thimo_3023 IPR003672 CobN/magnesium chelatase Thimo_3024 IPR042298 Proto-chlorophyllide reductase, C-terminal Thimo_3024 IPR005969 Light-independent protochlorophyllide reductase, B subunit Thimo_3024 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal Thimo_3024 IPR016209 Protochlorophyllide reductase, ChlB, light independent Thimo_3024 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3025 IPR005970 Light-independent protochlorophyllide reductase, N subunit Thimo_3025 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3026 IPR009905 2-vinyl bacteriochlorophyllide hydratase Thimo_3027 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3027 IPR004472 Dethiobiotin synthase BioD Thimo_3028 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3028 IPR013216 Methyltransferase type 11 Thimo_3028 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC Thimo_3029 IPR029058 Alpha/Beta hydrolase fold Thimo_3029 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3029 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase Thimo_3030 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_3030 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type Thimo_3030 IPR004839 Aminotransferase, class I/classII Thimo_3030 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria Thimo_3030 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3030 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_3030 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Thimo_3031 IPR010722 Biotin and thiamin synthesis-associated domain Thimo_3031 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB Thimo_3031 IPR013785 Aldolase-type TIM barrel Thimo_3031 IPR006638 Elp3/MiaB/NifB Thimo_3031 IPR007197 Radical SAM Thimo_3031 IPR024177 Biotin synthase Thimo_3032 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site Thimo_3032 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain Thimo_3032 IPR020103 Pseudouridine synthase, catalytic domain superfamily Thimo_3032 IPR006145 Pseudouridine synthase, RsuA/RluA Thimo_3032 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F Thimo_3037 IPR000639 Epoxide hydrolase-like Thimo_3037 IPR016292 Epoxide hydrolase Thimo_3037 IPR029058 Alpha/Beta hydrolase fold Thimo_3037 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3038 IPR001282 Glucose-6-phosphate dehydrogenase Thimo_3038 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding Thimo_3038 IPR036291 NAD(P)-binding domain superfamily Thimo_3038 IPR019796 Glucose-6-phosphate dehydrogenase, active site Thimo_3038 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal Thimo_3039 IPR006183 6-phosphogluconate dehydrogenase Thimo_3039 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_3039 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type Thimo_3039 IPR036291 NAD(P)-binding domain superfamily Thimo_3039 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Thimo_3039 IPR006114 6-phosphogluconate dehydrogenase, C-terminal Thimo_3039 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Thimo_3040 IPR008141 Alanine dehydrogenase Thimo_3040 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Thimo_3040 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 Thimo_3040 IPR036291 NAD(P)-binding domain superfamily Thimo_3040 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Thimo_3042 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 IPR037196 HSP90, C-terminal domain Thimo_3042 IPR001404 Heat shock protein Hsp90 family Thimo_3042 IPR019805 Heat shock protein Hsp90, conserved site Thimo_3042 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3042 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3042 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_3043 IPR016066 Alpha-D-phosphohexomutase, conserved site Thimo_3043 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Thimo_3043 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Thimo_3043 IPR005841 Alpha-D-phosphohexomutase superfamily Thimo_3043 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Thimo_3043 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Thimo_3043 IPR005843 Alpha-D-phosphohexomutase, C-terminal Thimo_3043 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Thimo_3044 IPR003593 AAA+ ATPase domain Thimo_3044 IPR011546 Peptidase M41, FtsH extracellular Thimo_3044 IPR000642 Peptidase M41 Thimo_3044 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3044 IPR003959 ATPase, AAA-type, core Thimo_3044 IPR041569 AAA ATPase, AAA+ lid domain Thimo_3044 IPR037219 Peptidase M41-like Thimo_3044 IPR005936 Peptidase, FtsH Thimo_3044 IPR003960 ATPase, AAA-type, conserved site Thimo_3046 IPR020084 NUDIX hydrolase, conserved site Thimo_3046 IPR000086 NUDIX hydrolase domain Thimo_3046 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_3046 IPR020476 NUDIX hydrolase Thimo_3046 IPR022927 RNA pyrophosphohydrolase RppH Thimo_3047 IPR004115 GAD-like domain superfamily Thimo_3047 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Thimo_3047 IPR006195 Aminoacyl-tRNA synthetase, class II Thimo_3047 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Thimo_3047 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Thimo_3047 IPR012340 Nucleic acid-binding, OB-fold Thimo_3047 IPR029351 GAD domain Thimo_3047 IPR004524 Aspartate-tRNA ligase, type 1 Thimo_3050 IPR002737 MEMO1 family Thimo_3053 IPR011051 RmlC-like cupin domain superfamily Thimo_3053 IPR014710 RmlC-like jelly roll fold Thimo_3053 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related Thimo_3054 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3054 IPR005835 Nucleotidyl transferase domain Thimo_3054 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form Thimo_3055 IPR016040 NAD(P)-binding domain Thimo_3055 IPR036291 NAD(P)-binding domain superfamily Thimo_3055 IPR005888 dTDP-glucose 4,6-dehydratase Thimo_3057 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ Thimo_3057 IPR003362 Bacterial sugar transferase Thimo_3057 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Thimo_3059 IPR004276 Glycosyltransferase family 28, N-terminal domain Thimo_3059 IPR006009 N-acetylglucosaminyltransferase, MurG Thimo_3059 IPR007235 Glycosyl transferase, family 28, C-terminal Thimo_3069 IPR001173 Glycosyltransferase 2-like Thimo_3069 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3070 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Thimo_3070 IPR001296 Glycosyl transferase, family 1 Thimo_3071 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3071 IPR001173 Glycosyltransferase 2-like Thimo_3084 IPR025944 Sigma-54 interaction domain, conserved site Thimo_3084 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3084 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_3084 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_3084 IPR003593 AAA+ ATPase domain Thimo_3084 IPR011006 CheY-like superfamily Thimo_3084 IPR009057 Homeobox-like domain superfamily Thimo_3084 IPR001789 Signal transduction response regulator, receiver domain Thimo_3084 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_3084 IPR002197 DNA binding HTH domain, Fis-type Thimo_3085 IPR023346 Lysozyme-like domain superfamily Thimo_3085 IPR008258 Transglycosylase SLT domain 1 Thimo_3085 IPR000189 Prokaryotic transglycosylase, active site Thimo_3092 IPR013026 Tetratricopeptide repeat-containing domain Thimo_3092 IPR019734 Tetratricopeptide repeat Thimo_3092 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_3097 IPR013785 Aldolase-type TIM barrel Thimo_3097 IPR006219 DHAP synthase, class 1 Thimo_3097 IPR006218 DAHP synthetase I/KDSA Thimo_3098 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3098 IPR010997 HRDC-like superfamily Thimo_3098 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Thimo_3098 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3098 IPR002121 HRDC domain Thimo_3098 IPR001650 Helicase, C-terminal Thimo_3098 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3098 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial Thimo_3098 IPR011545 DEAD/DEAH box helicase domain Thimo_3098 IPR004589 DNA helicase, ATP-dependent, RecQ type Thimo_3098 IPR018982 RQC domain Thimo_3101 IPR036259 MFS transporter superfamily Thimo_3101 IPR011701 Major facilitator superfamily Thimo_3101 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 Thimo_3102 IPR007476 Putative exonuclease, RdgC Thimo_3104 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_3104 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase Thimo_3104 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal Thimo_3104 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal Thimo_3105 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Thimo_3105 IPR008280 Tubulin/FtsZ, C-terminal Thimo_3105 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Thimo_3105 IPR003008 Tubulin/FtsZ, GTPase domain Thimo_3105 IPR024757 Cell division protein FtsZ, C-terminal Thimo_3105 IPR000158 Cell division protein FtsZ Thimo_3105 IPR020805 Cell division protein FtsZ, conserved site Thimo_3106 IPR003494 SHS2 domain inserted in FtsA Thimo_3106 IPR020823 Cell division protein FtsA Thimo_3107 IPR013685 POTRA domain, FtsQ-type Thimo_3107 IPR005548 Cell division protein FtsQ/DivIB Thimo_3107 IPR026579 Cell division protein FtsQ Thimo_3107 IPR034746 POTRA domain Thimo_3108 IPR005905 D-alanine--D-alanine ligase Thimo_3108 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site Thimo_3108 IPR011127 D-alanine--D-alanine ligase, N-terminal domain Thimo_3108 IPR011761 ATP-grasp fold Thimo_3108 IPR013815 ATP-grasp fold, subdomain 1 Thimo_3108 IPR016185 Pre-ATP-grasp domain superfamily Thimo_3108 IPR011095 D-alanine--D-alanine ligase, C-terminal Thimo_3109 IPR036318 FAD-binding, type PCMH-like superfamily Thimo_3109 IPR016166 FAD-binding domain, PCMH-type Thimo_3109 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_3109 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase Thimo_3109 IPR016167 FAD-binding, type PCMH, subdomain 1 Thimo_3109 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily Thimo_3109 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal Thimo_3109 IPR006094 FAD linked oxidase, N-terminal Thimo_3110 IPR036565 Mur-like, catalytic domain superfamily Thimo_3110 IPR004101 Mur ligase, C-terminal Thimo_3110 IPR036615 Mur ligase, C-terminal domain superfamily Thimo_3110 IPR013221 Mur ligase, central Thimo_3110 IPR000713 Mur ligase, N-terminal catalytic domain Thimo_3110 IPR005758 UDP-N-acetylmuramate--L-alanine ligase Thimo_3111 IPR007235 Glycosyl transferase, family 28, C-terminal Thimo_3111 IPR004276 Glycosyltransferase family 28, N-terminal domain Thimo_3111 IPR006009 N-acetylglucosaminyltransferase, MurG Thimo_3111 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_3112 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA Thimo_3112 IPR013437 Probable peptidoglycan glycosyltransferase FtsW Thimo_3113 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase Thimo_3113 IPR036565 Mur-like, catalytic domain superfamily Thimo_3113 IPR013221 Mur ligase, central Thimo_3113 IPR036615 Mur ligase, C-terminal domain superfamily Thimo_3113 IPR004101 Mur ligase, C-terminal Thimo_3114 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site Thimo_3114 IPR000715 Glycosyl transferase, family 4 Thimo_3114 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase Thimo_3115 IPR000713 Mur ligase, N-terminal catalytic domain Thimo_3115 IPR013221 Mur ligase, central Thimo_3115 IPR036615 Mur ligase, C-terminal domain superfamily Thimo_3115 IPR004101 Mur ligase, C-terminal Thimo_3115 IPR036565 Mur-like, catalytic domain superfamily Thimo_3115 IPR035911 MurE/MurF, N-terminal Thimo_3115 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Thimo_3116 IPR000713 Mur ligase, N-terminal catalytic domain Thimo_3116 IPR036565 Mur-like, catalytic domain superfamily Thimo_3116 IPR004101 Mur ligase, C-terminal Thimo_3116 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase Thimo_3116 IPR035911 MurE/MurF, N-terminal Thimo_3116 IPR036615 Mur ligase, C-terminal domain superfamily Thimo_3116 IPR013221 Mur ligase, central Thimo_3117 IPR037532 Peptidoglycan D,D-transpeptidase FtsI Thimo_3117 IPR001460 Penicillin-binding protein, transpeptidase Thimo_3117 IPR036138 Penicillin-binding protein, dimerisation domain superfamily Thimo_3117 IPR005311 Penicillin-binding protein, dimerisation domain Thimo_3117 IPR012338 Beta-lactamase/transpeptidase-like Thimo_3118 IPR011922 Cell division protein FtsL Thimo_3119 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily Thimo_3119 IPR002903 Ribosomal RNA small subunit methyltransferase H Thimo_3119 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3120 IPR037914 SpoVT-AbrB domain superfamily Thimo_3120 IPR003444 Transcriptional regulator MraZ Thimo_3120 IPR007159 SpoVT-AbrB domain Thimo_3120 IPR038619 MraZ superfamily Thimo_3120 IPR035642 MraZ, N-terminal Thimo_3120 IPR020603 MraZ domain Thimo_3120 IPR035644 MraZ, C-terminal Thimo_3122 IPR003805 Adenosylcobinamide-GDP ribazoletransferase Thimo_3123 IPR029033 Histidine phosphatase superfamily Thimo_3123 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_3123 IPR017578 Alpha-ribazole phosphatase, CobC Thimo_3123 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Thimo_3124 IPR029069 HotDog domain superfamily Thimo_3124 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Thimo_3124 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Thimo_3125 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3125 IPR003593 AAA+ ATPase domain Thimo_3125 IPR003439 ABC transporter-like Thimo_3125 IPR017871 ABC transporter, conserved site Thimo_3125 IPR015851 ABC transporter, NodI Thimo_3125 IPR005978 Nodulation ABC transporter, NodI Thimo_3127 IPR012730 Molybdopterin synthase sulfurylase MoeB Thimo_3127 IPR000594 THIF-type NAD/FAD binding fold Thimo_3127 IPR035985 Ubiquitin-activating enzyme Thimo_3129 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_3129 IPR004556 Methyltransferase HemK-like Thimo_3129 IPR040758 Release factor glutamine methyltransferase, N-terminal domain Thimo_3129 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific Thimo_3129 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3129 IPR007848 Methyltransferase small domain Thimo_3130 IPR000352 Peptide chain release factor class I Thimo_3130 IPR005139 Peptide chain release factor Thimo_3130 IPR004373 Peptide chain release factor 1 Thimo_3131 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily Thimo_3131 IPR018214 Glutamyl-tRNA reductase, conserved site Thimo_3131 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal Thimo_3131 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain Thimo_3131 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase Thimo_3131 IPR036291 NAD(P)-binding domain superfamily Thimo_3131 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Thimo_3131 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily Thimo_3132 IPR013026 Tetratricopeptide repeat-containing domain Thimo_3132 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_3132 IPR019734 Tetratricopeptide repeat Thimo_3133 IPR013750 GHMP kinase, C-terminal domain Thimo_3133 IPR036554 GHMP kinase, C-terminal domain superfamily Thimo_3133 IPR006204 GHMP kinase N-terminal domain Thimo_3133 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Thimo_3133 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_3133 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_3135 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain Thimo_3135 IPR000836 Phosphoribosyltransferase domain Thimo_3135 IPR029057 Phosphoribosyltransferase-like Thimo_3135 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site Thimo_3135 IPR005946 Ribose-phosphate pyrophosphokinase Thimo_3135 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type Thimo_3136 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily Thimo_3136 IPR029751 Ribosomal protein L25 Thimo_3136 IPR001021 Ribosomal protein L25, long-form Thimo_3136 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Thimo_3136 IPR020055 Ribosomal protein L25, short-form Thimo_3136 IPR020057 Ribosomal protein L25, beta domain Thimo_3136 IPR037121 Ribosomal protein L25, C-terminal Thimo_3137 IPR036416 Peptidyl-tRNA hydrolase superfamily Thimo_3137 IPR018171 Peptidyl-tRNA hydrolase, conserved site Thimo_3137 IPR001328 Peptidyl-tRNA hydrolase Thimo_3138 IPR005886 UDP-glucose 4-epimerase Thimo_3138 IPR036291 NAD(P)-binding domain superfamily Thimo_3138 IPR016040 NAD(P)-binding domain Thimo_3141 IPR001610 PAC motif Thimo_3141 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3141 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3141 IPR035965 PAS domain superfamily Thimo_3141 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3141 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3141 IPR003660 HAMP domain Thimo_3141 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3141 IPR000700 PAS-associated, C-terminal Thimo_3141 IPR005467 Histidine kinase domain Thimo_3141 IPR000014 PAS domain Thimo_3142 IPR001789 Signal transduction response regulator, receiver domain Thimo_3142 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_3142 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3142 IPR039420 Transcriptional regulatory protein WalR-like Thimo_3142 IPR011006 CheY-like superfamily Thimo_3142 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_3143 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_3143 IPR006143 RND efflux pump, membrane fusion protein Thimo_3144 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3144 IPR001036 Acriflavin resistance protein Thimo_3144 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Thimo_3145 IPR010131 RND efflux system, outer membrane lipoprotein, NodT Thimo_3145 IPR003423 Outer membrane efflux protein Thimo_3148 IPR009241 Toxin HigB-like Thimo_3151 IPR034739 UvrD/AddA helicase, N-terminal Thimo_3151 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3151 IPR005752 ATP-dependent DNA helicase Rep Thimo_3151 IPR000212 DNA helicase, UvrD/REP type Thimo_3151 IPR013986 DExx box DNA helicase domain superfamily Thimo_3151 IPR014017 UvrD-like DNA helicase, C-terminal Thimo_3151 IPR014016 UvrD-like helicase, ATP-binding domain Thimo_3154 IPR006073 GTP binding domain Thimo_3154 IPR031166 EngA-type guanine nucleotide-binding (G) domain Thimo_3154 IPR015946 K homology domain-like, alpha/beta Thimo_3154 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3154 IPR005225 Small GTP-binding protein domain Thimo_3154 IPR016484 GTP-binding protein EngA Thimo_3154 IPR032859 GTPase Der, C-terminal KH-domain-like Thimo_3156 IPR004254 AdipoR/Haemolysin-III-related Thimo_3156 IPR005744 Hly-III Thimo_3157 IPR003593 AAA+ ATPase domain Thimo_3157 IPR003439 ABC transporter-like Thimo_3157 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3157 IPR017871 ABC transporter, conserved site Thimo_3160 IPR005952 Phosphoglycerate mutase 1 Thimo_3160 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_3160 IPR029033 Histidine phosphatase superfamily Thimo_3160 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Thimo_3161 IPR000160 GGDEF domain Thimo_3161 IPR039435 Diguanylate cyclase DosC, globin sensor domain Thimo_3161 IPR029787 Nucleotide cyclase Thimo_3161 IPR012292 Globin/Protoglobin Thimo_3161 IPR009050 Globin-like superfamily Thimo_3163 IPR036380 Isochorismatase-like superfamily Thimo_3163 IPR000868 Isochorismatase-like Thimo_3164 IPR012902 Prokaryotic N-terminal methylation site Thimo_3164 IPR001082 Fimbrial protein pilin Thimo_3165 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Thimo_3165 IPR008707 PilC beta-propeller domain Thimo_3171 IPR003593 AAA+ ATPase domain Thimo_3171 IPR001650 Helicase, C-terminal Thimo_3171 IPR024590 RNA helicase HrpA, C-terminal Thimo_3171 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3171 IPR007502 Helicase-associated domain Thimo_3171 IPR010222 RNA helicase HrpA Thimo_3171 IPR011709 Domain of unknown function DUF1605 Thimo_3171 IPR011545 DEAD/DEAH box helicase domain Thimo_3171 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3172 IPR002890 Macroglobulin domain Thimo_3172 IPR011625 Alpha-2-macroglobulin, bait region domain Thimo_3172 IPR021868 Alpha-2-macroglobulin MG3 domain Thimo_3172 IPR040639 Alpha-2-macroglobulin, MG1 domain Thimo_3172 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Thimo_3172 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain Thimo_3172 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain Thimo_3172 IPR001599 Alpha-2-macroglobulin Thimo_3172 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain Thimo_3172 IPR026284 Alpha-2-macroglobulin, bacteria Thimo_3173 IPR012338 Beta-lactamase/transpeptidase-like Thimo_3173 IPR001264 Glycosyl transferase, family 51 Thimo_3173 IPR023346 Lysozyme-like domain superfamily Thimo_3173 IPR011815 Penicillin-binding protein 1C Thimo_3173 IPR009647 Penicillin-binding, C-terminal Thimo_3173 IPR036950 Penicillin binding protein transglycosylase domain Thimo_3173 IPR001460 Penicillin-binding protein, transpeptidase Thimo_3180 IPR003593 AAA+ ATPase domain Thimo_3180 IPR003439 ABC transporter-like Thimo_3180 IPR017871 ABC transporter, conserved site Thimo_3180 IPR015853 ABC transporter, ferric cation import, FbpC Thimo_3180 IPR013611 Transport-associated OB, type 2 Thimo_3180 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_3180 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3180 IPR030287 Fe(3+) ions import ATP-binding protein FbpC Thimo_3181 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_3181 IPR035906 MetI-like superfamily Thimo_3181 IPR011867 Molybdate ABC transporter, permease protein Thimo_3185 IPR037682 TonB, C-terminal Thimo_3185 IPR006260 TonB/TolA, C-terminal Thimo_3185 IPR003538 Gram-negative bacterial TonB protein Thimo_3186 IPR003400 Biopolymer transport protein ExbD/TolR Thimo_3186 IPR014170 TonB system transport protein ExbD type-1 Thimo_3187 IPR002898 MotA/TolQ/ExbB proton channel Thimo_3189 IPR010101 TonB-dependent vitamin B12 transporter BtuB Thimo_3189 IPR039426 Vitamin B12 transporter BtuB-like Thimo_3189 IPR012910 TonB-dependent receptor, plug domain Thimo_3189 IPR037066 TonB-dependent receptor, plug domain superfamily Thimo_3189 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_3189 IPR010916 TonB box, conserved site Thimo_3189 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_3191 IPR013785 Aldolase-type TIM barrel Thimo_3191 IPR002915 DeoC/FbaB/ lacD aldolase Thimo_3191 IPR041720 Aldolase FbaB-like, archaeal-type Thimo_3193 IPR002765 Uncharacterised protein family UPF0145 Thimo_3193 IPR035439 UPF0145 domain superfamily Thimo_3196 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3196 IPR003660 HAMP domain Thimo_3196 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3196 IPR038429 PhoQ Sensor superfamily Thimo_3196 IPR005467 Histidine kinase domain Thimo_3196 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3196 IPR015014 PhoQ Sensor Thimo_3196 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3197 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3197 IPR001789 Signal transduction response regulator, receiver domain Thimo_3197 IPR011006 CheY-like superfamily Thimo_3197 IPR039420 Transcriptional regulatory protein WalR-like Thimo_3197 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_3200 IPR011105 Cell wall hydrolase, SleB Thimo_3200 IPR002477 Peptidoglycan binding-like Thimo_3200 IPR036365 PGBD-like superfamily Thimo_3200 IPR042047 Cell wall hydrolase SleB, domain 1 Thimo_3200 IPR014224 Spore cortex-lytic enzyme SleB Thimo_3200 IPR036366 PGBD superfamily Thimo_3203 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_3203 IPR003918 NADH:ubiquinone oxidoreductase Thimo_3204 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H Thimo_3204 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site Thimo_3205 IPR038730 Hydrogenase-4 component E-like Thimo_3206 IPR003918 NADH:ubiquinone oxidoreductase Thimo_3206 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_3207 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_3207 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Thimo_3207 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Thimo_3207 IPR001135 NADH-quinone oxidoreductase, subunit D Thimo_3207 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Thimo_3208 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Thimo_3208 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_3222 IPR022907 VapC family Thimo_3222 IPR002716 PIN domain Thimo_3222 IPR029060 PIN-like domain superfamily Thimo_3224 IPR038718 SNF2-like, N-terminal domain superfamily Thimo_3224 IPR000330 SNF2-related, N-terminal domain Thimo_3224 IPR007527 Zinc finger, SWIM-type Thimo_3224 IPR001650 Helicase, C-terminal Thimo_3224 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3224 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3227 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3227 IPR010285 DNA helicase Pif1-like Thimo_3227 IPR003593 AAA+ ATPase domain Thimo_3228 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase Thimo_3228 IPR036291 NAD(P)-binding domain superfamily Thimo_3228 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_3230 IPR027304 Trigger factor/SurA domain superfamily Thimo_3230 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Thimo_3230 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Thimo_3230 IPR014282 Nitrogen fixation protein NifM Thimo_3231 IPR007415 Nitrogenase MoFe maturation protein, NifZ Thimo_3232 IPR004893 Nitrogen fixation protein NifW Thimo_3233 IPR011990 Tetratricopeptide-like helical domain superfamily Thimo_3234 IPR013477 Homocitrate synthase NifV-like Thimo_3234 IPR000891 Pyruvate carboxyltransferase Thimo_3234 IPR013785 Aldolase-type TIM barrel Thimo_3234 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site Thimo_3235 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_3235 IPR001821 [NiFe]-hydrogenase, small subunit Thimo_3235 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_3235 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_3235 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Thimo_3235 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_3235 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Thimo_3236 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_3236 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Thimo_3236 IPR001501 Nickel-dependent hydrogenase, large subunit Thimo_3237 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit Thimo_3237 IPR016174 Di-haem cytochrome, transmembrane Thimo_3237 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Thimo_3238 IPR004419 Peptidase A31, hydrogenase expression/formation protein Thimo_3238 IPR000671 Peptidase A31 family Thimo_3238 IPR023430 Peptidase HybD-like domain superfamily Thimo_3240 IPR034169 NifX-like domain Thimo_3240 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_3240 IPR038127 NafY, N-terminal domain superfamily Thimo_3240 IPR031763 Dinitrogenase iron-molybdenum cofactor, N-terminal Thimo_3240 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3241 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3241 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3242 IPR009727 NifT/FixU Thimo_3242 IPR024044 NifT/FixU barrel-like domain superfamily Thimo_3243 IPR005976 Nitrogenase molybdenum-iron protein beta chain Thimo_3243 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal Thimo_3243 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3243 IPR000318 Nitrogenase component 1, conserved site Thimo_3244 IPR005972 Nitrogenase molybdenum-iron protein alpha chain Thimo_3244 IPR000318 Nitrogenase component 1, conserved site Thimo_3244 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3244 IPR010143 Nitrogenase component 1, alpha chain Thimo_3245 IPR030655 NifH/chlL conserved site Thimo_3245 IPR005977 Nitrogenase iron protein NifH Thimo_3245 IPR000392 NifH/frxC family Thimo_3245 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3246 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase Thimo_3248 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_3248 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3248 IPR006638 Elp3/MiaB/NifB Thimo_3248 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site Thimo_3248 IPR005980 Nitrogenase cofactor biosynthesis protein NifB Thimo_3248 IPR013785 Aldolase-type TIM barrel Thimo_3248 IPR034165 FeMo cofactor biosynthesis protein NifB, C-terminal Thimo_3248 IPR007197 Radical SAM Thimo_3249 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3249 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3250 IPR001226 Flavodoxin, conserved site Thimo_3250 IPR029039 Flavoprotein-like superfamily Thimo_3250 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3250 IPR016440 Rubredoxin-oxygen oxidoreductase Thimo_3250 IPR008254 Flavodoxin/nitric oxide synthase Thimo_3250 IPR001279 Metallo-beta-lactamase Thimo_3251 IPR012675 Beta-grasp domain superfamily Thimo_3251 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Thimo_3251 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_3251 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_3252 IPR036010 2Fe-2S ferredoxin-like superfamily Thimo_3252 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Thimo_3252 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Thimo_3252 IPR012675 Beta-grasp domain superfamily Thimo_3253 IPR006975 NifQ Thimo_3254 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Thimo_3254 IPR005502 ADP-ribosylation/Crystallin J1 Thimo_3254 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase Thimo_3255 IPR029787 Nucleotide cyclase Thimo_3255 IPR007895 MASE1 Thimo_3255 IPR000160 GGDEF domain Thimo_3255 IPR035919 EAL domain superfamily Thimo_3255 IPR000014 PAS domain Thimo_3255 IPR000700 PAS-associated, C-terminal Thimo_3255 IPR035965 PAS domain superfamily Thimo_3255 IPR013656 PAS fold-4 Thimo_3255 IPR001633 EAL domain Thimo_3255 IPR001610 PAC motif Thimo_3255 IPR013655 PAS fold-3 Thimo_3259 IPR002505 Phosphate acetyl/butaryl transferase Thimo_3259 IPR015884 Malic enzyme, conserved site Thimo_3259 IPR012302 Malic enzyme, NAD-binding Thimo_3259 IPR037062 Malic enzyme, N-terminal domain superfamily Thimo_3259 IPR012188 NAD(P)-dependent malic enzyme Thimo_3259 IPR012301 Malic enzyme, N-terminal domain Thimo_3259 IPR042113 Phosphate acetyltransferase, domain 1 Thimo_3259 IPR036291 NAD(P)-binding domain superfamily Thimo_3259 IPR042112 Phosphate acetyltransferase, domain 2 Thimo_3261 IPR010233 Ubiquinone biosynthesis O-methyltransferase Thimo_3261 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3262 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Thimo_3262 IPR029052 Metallo-dependent phosphatase-like Thimo_3262 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Thimo_3263 IPR007474 ApaG domain Thimo_3263 IPR023065 Uncharacterised protein family ApaG Thimo_3263 IPR036767 ApaG domain superfamily Thimo_3266 IPR027304 Trigger factor/SurA domain superfamily Thimo_3266 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Thimo_3266 IPR023034 Peptidyl-prolyl isomerase SurA Thimo_3266 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Thimo_3266 IPR015391 SurA N-terminal Thimo_3267 IPR020889 LPS-assembly protein LptD Thimo_3267 IPR005653 Organic solvent tolerance-like, N-terminal Thimo_3267 IPR007543 LptD, C-terminal Thimo_3268 IPR036676 PurM-like, C-terminal domain superfamily Thimo_3268 IPR036921 PurM-like, N-terminal domain superfamily Thimo_3268 IPR010918 PurM-like, C-terminal domain Thimo_3268 IPR011854 Carbamoyl dehydratase HypE Thimo_3268 IPR016188 PurM-like, N-terminal domain Thimo_3269 IPR042243 HypD, domain 2 Thimo_3269 IPR002780 Hydrogenase formation HypD protein Thimo_3269 IPR042244 HypD, domain 1 Thimo_3270 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 IPR019812 Hydrogenase assembly chaperone, conserved site Thimo_3270 IPR037254 HupF/HypC superfamily Thimo_3271 IPR001501 Nickel-dependent hydrogenase, large subunit Thimo_3271 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_3272 IPR007848 Methyltransferase small domain Thimo_3272 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3274 IPR001653 Diaminopimelate epimerase, DapF Thimo_3274 IPR018510 Diaminopimelate epimerase, active site Thimo_3275 IPR029016 GAF-like domain superfamily Thimo_3275 IPR007435 Protein of unknown function DUF484 Thimo_3276 IPR010998 Integrase/recombinase, N-terminal Thimo_3276 IPR002104 Integrase, catalytic domain Thimo_3276 IPR011931 Tyrosine recombinase XerC Thimo_3276 IPR023009 Tyrosine recombinase XerC/XerD Thimo_3276 IPR004107 Integrase, SAM-like, N-terminal Thimo_3276 IPR013762 Integrase-like, catalytic domain superfamily Thimo_3276 IPR011010 DNA breaking-rejoining enzyme, catalytic core Thimo_3278 IPR023333 Proteasome B-type subunit Thimo_3278 IPR022281 ATP-dependent protease, HslV subunit Thimo_3278 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3278 IPR001353 Proteasome, subunit alpha/beta Thimo_3279 IPR003593 AAA+ ATPase domain Thimo_3279 IPR003959 ATPase, AAA-type, core Thimo_3279 IPR019489 Clp ATPase, C-terminal Thimo_3279 IPR004491 Heat shock protein HslU Thimo_3279 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3280 IPR026669 Arsenite methyltransferase-like Thimo_3280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3280 IPR025714 Methyltransferase domain Thimo_3283 IPR004636 Acetylornithine/Succinylornithine transaminase family Thimo_3283 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_3283 IPR005814 Aminotransferase class-III Thimo_3283 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_3283 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3284 IPR006130 Aspartate/ornithine carbamoyltransferase Thimo_3284 IPR024904 Ornithine carbamoyltransferase Thimo_3284 IPR002292 Ornithine/putrescine carbamoyltransferase Thimo_3284 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Thimo_3284 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Thimo_3284 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Thimo_3288 IPR005829 Sugar transporter, conserved site Thimo_3288 IPR036259 MFS transporter superfamily Thimo_3288 IPR020846 Major facilitator superfamily domain Thimo_3288 IPR011701 Major facilitator superfamily Thimo_3288 IPR004638 Drug resistance transporter EmrB-like Thimo_3289 IPR016040 NAD(P)-binding domain Thimo_3289 IPR021295 Protein of unknown function DUF2867 Thimo_3289 IPR036291 NAD(P)-binding domain superfamily Thimo_3292 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 IPR036291 NAD(P)-binding domain superfamily Thimo_3295 IPR005467 Histidine kinase domain Thimo_3295 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3295 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3295 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3295 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3295 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3295 IPR003660 HAMP domain Thimo_3296 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR Thimo_3296 IPR035965 PAS domain superfamily Thimo_3296 IPR013767 PAS fold Thimo_3296 IPR021766 Phosphate regulon sensor protein PhoR Thimo_3296 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3296 IPR005467 Histidine kinase domain Thimo_3296 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3296 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3296 IPR000014 PAS domain Thimo_3296 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3296 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3297 IPR001789 Signal transduction response regulator, receiver domain Thimo_3297 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB Thimo_3297 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_3297 IPR011006 CheY-like superfamily Thimo_3297 IPR039420 Transcriptional regulatory protein WalR-like Thimo_3297 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3298 IPR001279 Metallo-beta-lactamase Thimo_3298 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3298 IPR013471 Ribonuclease Z/BN Thimo_3299 IPR020476 NUDIX hydrolase Thimo_3299 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_3299 IPR020084 NUDIX hydrolase, conserved site Thimo_3299 IPR000086 NUDIX hydrolase domain Thimo_3300 IPR003808 Fe-S metabolism associated domain, SufE-like Thimo_3300 IPR023939 Cysteine desulfuration protein SufE Thimo_3301 IPR011302 Iron-binding protein IscA, proteobacteria Thimo_3301 IPR035903 HesB-like domain superfamily Thimo_3301 IPR017870 FeS cluster insertion, C-terminal, conserved site Thimo_3301 IPR016092 FeS cluster insertion protein Thimo_3301 IPR000361 FeS cluster biogenesis Thimo_3302 IPR023353 LemA-like domain superfamily Thimo_3302 IPR007156 LemA Thimo_3304 IPR013655 PAS fold-3 Thimo_3304 IPR000160 GGDEF domain Thimo_3304 IPR013656 PAS fold-4 Thimo_3304 IPR000014 PAS domain Thimo_3304 IPR001633 EAL domain Thimo_3304 IPR029787 Nucleotide cyclase Thimo_3304 IPR001610 PAC motif Thimo_3304 IPR035919 EAL domain superfamily Thimo_3304 IPR000700 PAS-associated, C-terminal Thimo_3304 IPR035965 PAS domain superfamily Thimo_3310 IPR029058 Alpha/Beta hydrolase fold Thimo_3310 IPR019913 Pyrimidine utilisation protein RutD Thimo_3310 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3311 IPR005801 ADC synthase Thimo_3311 IPR015890 Chorismate-utilising enzyme, C-terminal Thimo_3311 IPR004561 Isochorismate synthase Thimo_3312 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Thimo_3312 IPR029061 Thiamin diphosphate-binding fold Thimo_3312 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Thimo_3312 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Thimo_3312 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_3313 IPR014748 Enoyl-CoA hydratase, C-terminal Thimo_3313 IPR001753 Enoyl-CoA hydratase/isomerase Thimo_3313 IPR029045 ClpP/crotonase-like domain superfamily Thimo_3313 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB Thimo_3313 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site Thimo_3314 IPR000537 UbiA prenyltransferase family Thimo_3314 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase Thimo_3314 IPR026046 UbiA prenyltransferase domain containing protein 1 Thimo_3315 IPR036849 Enolase-like, C-terminal domain superfamily Thimo_3315 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Thimo_3315 IPR029017 Enolase-like, N-terminal Thimo_3315 IPR029065 Enolase C-terminal domain-like Thimo_3315 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site Thimo_3315 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Thimo_3315 IPR034603 Dipeptide epimerase Thimo_3317 IPR017853 Glycoside hydrolase superfamily Thimo_3317 IPR003385 Glycoside hydrolase, family 77 Thimo_3318 IPR011831 Glucose-1-phosphate adenylyltransferase Thimo_3318 IPR005836 ADP-glucose pyrophosphorylase, conserved site Thimo_3318 IPR005835 Nucleotidyl transferase domain Thimo_3318 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3318 IPR011004 Trimeric LpxA-like superfamily Thimo_3318 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial Thimo_3319 IPR014756 Immunoglobulin E-set Thimo_3319 IPR013783 Immunoglobulin-like fold Thimo_3319 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_3319 IPR004193 Glycoside hydrolase, family 13, N-terminal Thimo_3319 IPR037439 1,4-alpha-glucan-branching enzyme Thimo_3319 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB Thimo_3319 IPR013780 Glycosyl hydrolase, all-beta Thimo_3319 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta Thimo_3319 IPR017853 Glycoside hydrolase superfamily Thimo_3320 IPR012156 Cold shock, CspA Thimo_3320 IPR011129 Cold shock domain Thimo_3320 IPR019844 Cold-shock (CSD) domain Thimo_3320 IPR002059 Cold-shock protein, DNA-binding Thimo_3320 IPR012340 Nucleic acid-binding, OB-fold Thimo_3321 IPR032435 Band 7, C-terminal extension Thimo_3321 IPR018080 Band 7/stomatin-like, conserved site Thimo_3321 IPR001972 Stomatin family Thimo_3321 IPR036013 Band 7/SPFH domain superfamily Thimo_3321 IPR001107 Band 7 domain Thimo_3323 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily Thimo_3323 IPR003448 Molybdopterin biosynthesis MoaE Thimo_3324 IPR005802 Aminodeoxychorismate synthase, component I Thimo_3324 IPR019999 Anthranilate synthase component I-like Thimo_3324 IPR005801 ADC synthase Thimo_3324 IPR006805 Anthranilate synthase component I, N-terminal Thimo_3324 IPR015890 Chorismate-utilising enzyme, C-terminal Thimo_3326 IPR023151 PEP-utilising enzyme, conserved site Thimo_3326 IPR000121 PEP-utilising enzyme, C-terminal Thimo_3326 IPR018274 PEP-utilising enzyme, active site Thimo_3326 IPR010121 Pyruvate, phosphate dikinase Thimo_3326 IPR008279 PEP-utilising enzyme, mobile domain Thimo_3326 IPR013815 ATP-grasp fold, subdomain 1 Thimo_3326 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_3326 IPR040442 Pyruvate kinase-like domain superfamily Thimo_3326 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding Thimo_3326 IPR036637 Phosphohistidine domain superfamily Thimo_3328 IPR002303 Valine-tRNA ligase Thimo_3328 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Thimo_3328 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm Thimo_3328 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily Thimo_3328 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Thimo_3328 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Thimo_3328 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Thimo_3328 IPR002300 Aminoacyl-tRNA synthetase, class Ia Thimo_3328 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3328 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Thimo_3328 IPR033705 Valyl tRNA synthetase, anticodon-binding domain Thimo_3329 IPR012318 Crp-type HTH domain Thimo_3329 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3329 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3329 IPR000595 Cyclic nucleotide-binding domain Thimo_3329 IPR018490 Cyclic nucleotide-binding-like Thimo_3329 IPR014710 RmlC-like jelly roll fold Thimo_3331 IPR007428 MlaA lipoprotein Thimo_3332 IPR005987 Ribonuclease T Thimo_3332 IPR012337 Ribonuclease H-like superfamily Thimo_3332 IPR036397 Ribonuclease H superfamily Thimo_3332 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3333 IPR004480 Monothiol glutaredoxin-related Thimo_3333 IPR033658 Glutaredoxin, PICOT-like Thimo_3333 IPR014434 Monothiol glutaredoxin Thimo_3333 IPR036249 Thioredoxin-like superfamily Thimo_3333 IPR002109 Glutaredoxin Thimo_3334 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3334 IPR017932 Glutamine amidotransferase type 2 domain Thimo_3334 IPR033738 Asparagine synthase, N-terminal domain Thimo_3334 IPR001962 Asparagine synthase Thimo_3334 IPR006426 Asparagine synthase, glutamine-hydrolyzing Thimo_3337 IPR001189 Manganese/iron superoxide dismutase Thimo_3337 IPR019832 Manganese/iron superoxide dismutase, C-terminal Thimo_3337 IPR019833 Manganese/iron superoxide dismutase, binding site Thimo_3337 IPR019831 Manganese/iron superoxide dismutase, N-terminal Thimo_3337 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily Thimo_3337 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily Thimo_3339 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal Thimo_3339 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal Thimo_3339 IPR036422 RuBisCO large subunit, N-terminal domain superfamily Thimo_3339 IPR020871 Ribulose bisphosphate carboxylase large subunit, type II Thimo_3339 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily Thimo_3339 IPR033966 RuBisCO Thimo_3339 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site Thimo_3340 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_3340 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Thimo_3340 IPR001501 Nickel-dependent hydrogenase, large subunit Thimo_3342 IPR036197 NarG-like superfamily Thimo_3343 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Thimo_3343 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_3343 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Thimo_3343 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_3343 IPR001821 [NiFe]-hydrogenase, small subunit Thimo_3343 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_3343 IPR006311 Twin-arginine translocation pathway, signal sequence Thimo_3357 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Thimo_3357 IPR029014 [NiFe]-hydrogenase, large subunit Thimo_3357 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Thimo_3357 IPR001135 NADH-quinone oxidoreductase, subunit D Thimo_3359 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Thimo_3359 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Thimo_3361 IPR005663 Monovalent cation proton antiporter subunit A Thimo_3361 IPR025383 Domain of unknown function DUF4040 Thimo_3361 IPR005281 Monovalent cation:proton antiporter, subunit B Thimo_3361 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Thimo_3361 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Thimo_3361 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Thimo_3362 IPR005122 Uracil-DNA glycosylase-like Thimo_3362 IPR036895 Uracil-DNA glycosylase-like domain superfamily Thimo_3362 IPR005273 Uracil-DNA glycosylase family 4 Thimo_3363 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily Thimo_3363 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site Thimo_3363 IPR000891 Pyruvate carboxyltransferase Thimo_3363 IPR005671 2-isopropylmalate synthase, bacterial-type Thimo_3363 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Thimo_3363 IPR013785 Aldolase-type TIM barrel Thimo_3364 IPR020890 Transcription regulator HTH, HdfR Thimo_3364 IPR000847 Transcription regulator HTH, LysR Thimo_3364 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3364 IPR005119 LysR, substrate-binding Thimo_3364 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3365 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_3365 IPR025526 DsrC-like domain superfamily Thimo_3365 IPR042072 DsrC-like protein, C-terminal domain Thimo_3366 IPR013785 Aldolase-type TIM barrel Thimo_3366 IPR015875 IMP dehydrogenase / GMP reductase, conserved site Thimo_3366 IPR005990 Inosine-5'-monophosphate dehydrogenase Thimo_3366 IPR000644 CBS domain Thimo_3366 IPR001093 IMP dehydrogenase/GMP reductase Thimo_3368 IPR010048 Hydroxylamine reductase Thimo_3368 IPR016099 Prismane-like, alpha/beta-sandwich Thimo_3368 IPR011254 Prismane-like superfamily Thimo_3368 IPR016100 Prismane, alpha-bundle Thimo_3368 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase Thimo_3369 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_3369 IPR018490 Cyclic nucleotide-binding-like Thimo_3369 IPR000595 Cyclic nucleotide-binding domain Thimo_3369 IPR001423 Lysophospholipase patatin, conserved site Thimo_3369 IPR002641 Patatin-like phospholipase domain Thimo_3369 IPR014710 RmlC-like jelly roll fold Thimo_3373 IPR011004 Trimeric LpxA-like superfamily Thimo_3373 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3373 IPR005835 Nucleotidyl transferase domain Thimo_3373 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial Thimo_3373 IPR005836 ADP-glucose pyrophosphorylase, conserved site Thimo_3374 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily Thimo_3374 IPR017850 Alkaline-phosphatase-like, core domain superfamily Thimo_3374 IPR011258 BPG-independent PGAM, N-terminal Thimo_3374 IPR006124 Metalloenzyme Thimo_3374 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Thimo_3375 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily Thimo_3375 IPR000398 Thymidylate synthase Thimo_3375 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain Thimo_3376 IPR002898 MotA/TolQ/ExbB proton channel Thimo_3377 IPR003400 Biopolymer transport protein ExbD/TolR Thimo_3378 IPR011527 ABC transporter type 1, transmembrane domain Thimo_3378 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_3378 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3378 IPR003593 AAA+ ATPase domain Thimo_3378 IPR003439 ABC transporter-like Thimo_3378 IPR017871 ABC transporter, conserved site Thimo_3378 IPR039421 Type I protein exporter Thimo_3378 IPR011917 ABC transporter, lipid A export, MsbA Thimo_3379 IPR003758 Tetraacyldisaccharide 4'-kinase Thimo_3379 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3380 IPR005651 Trm112-like Thimo_3381 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3381 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase Thimo_3381 IPR003329 Acylneuraminate cytidylyltransferase Thimo_3383 IPR038770 Sodium/solute symporter superfamily Thimo_3383 IPR006153 Cation/H+ exchanger Thimo_3383 IPR018422 Cation/H+ exchanger, CPA1 family Thimo_3391 IPR011794 Hg(II)-responsive transcriptional regulator Thimo_3391 IPR009061 Putative DNA-binding domain superfamily Thimo_3391 IPR000551 MerR-type HTH domain Thimo_3392 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_3392 IPR006121 Heavy metal-associated domain, HMA Thimo_3392 IPR036163 Heavy metal-associated domain superfamily Thimo_3392 IPR027256 P-type ATPase, subfamily IB Thimo_3392 IPR001757 P-type ATPase Thimo_3392 IPR023214 HAD superfamily Thimo_3392 IPR036412 HAD-like superfamily Thimo_3392 IPR008250 P-type ATPase, A domain superfamily Thimo_3392 IPR006122 Heavy metal-associated domain, copper ion-binding Thimo_3392 IPR017969 Heavy-metal-associated, conserved site Thimo_3392 IPR018303 P-type ATPase, phosphorylation site Thimo_3392 IPR023299 P-type ATPase, cytoplasmic domain N Thimo_3393 IPR036163 Heavy metal-associated domain superfamily Thimo_3393 IPR006121 Heavy metal-associated domain, HMA Thimo_3393 IPR001757 P-type ATPase Thimo_3393 IPR017969 Heavy-metal-associated, conserved site Thimo_3393 IPR023214 HAD superfamily Thimo_3393 IPR036412 HAD-like superfamily Thimo_3393 IPR008250 P-type ATPase, A domain superfamily Thimo_3393 IPR023299 P-type ATPase, cytoplasmic domain N Thimo_3393 IPR027256 P-type ATPase, subfamily IB Thimo_3393 IPR018303 P-type ATPase, phosphorylation site Thimo_3393 IPR023298 P-type ATPase, transmembrane domain superfamily Thimo_3397 IPR001204 Phosphate transporter Thimo_3398 IPR002646 Poly A polymerase, head domain Thimo_3398 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Thimo_3398 IPR003607 HD/PDEase domain Thimo_3398 IPR012006 tRNA nucleotidyltransferase, proteobacteria Thimo_3398 IPR006674 HD domain Thimo_3402 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3402 IPR001789 Signal transduction response regulator, receiver domain Thimo_3402 IPR011006 CheY-like superfamily Thimo_3402 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Thimo_3402 IPR036641 HPT domain superfamily Thimo_3402 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3402 IPR003660 HAMP domain Thimo_3402 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3402 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3402 IPR005467 Histidine kinase domain Thimo_3402 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3402 IPR019247 Histidine kinase BarA, N-terminal Thimo_3403 IPR029787 Nucleotide cyclase Thimo_3403 IPR001789 Signal transduction response regulator, receiver domain Thimo_3403 IPR000160 GGDEF domain Thimo_3403 IPR011006 CheY-like superfamily Thimo_3405 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_3405 IPR004839 Aminotransferase, class I/classII Thimo_3405 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3405 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Thimo_3405 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_3405 IPR005860 L-threonine-O-3-phosphate decarboxylase Thimo_3406 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3406 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 Thimo_3406 IPR011698 CobB/CobQ-like glutamine amidotransferase Thimo_3406 IPR004459 Cobyric acid synthase CobQ Thimo_3406 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_3406 IPR017929 CobB/CobQ glutamine amidotransferase Thimo_3406 IPR029062 Class I glutamine amidotransferase-like Thimo_3407 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like Thimo_3407 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily Thimo_3407 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic Thimo_3407 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal Thimo_3410 IPR019239 Bacterial antitoxin of type II TA system, VapB Thimo_3413 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class Thimo_3413 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_3413 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3413 IPR002941 DNA methylase N-4/N-6 Thimo_3420 IPR001915 Peptidase M48 Thimo_3420 IPR022919 Peptidase M48, protease HtpX, putative Thimo_3421 IPR036909 Cytochrome c-like domain superfamily Thimo_3422 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal Thimo_3422 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal Thimo_3422 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3422 IPR012132 Glucose-methanol-choline oxidoreductase Thimo_3422 IPR027424 Glucose Oxidase, domain 2 Thimo_3424 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_3424 IPR002641 Patatin-like phospholipase domain Thimo_3426 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3426 IPR005467 Histidine kinase domain Thimo_3426 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3426 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3426 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3426 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3426 IPR003660 HAMP domain Thimo_3427 IPR001789 Signal transduction response regulator, receiver domain Thimo_3427 IPR011006 CheY-like superfamily Thimo_3427 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_3427 IPR016032 Signal transduction response regulator, C-terminal effector Thimo_3427 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3427 IPR039420 Transcriptional regulatory protein WalR-like Thimo_3430 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3430 IPR040582 MalK, OB fold domain Thimo_3430 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_3430 IPR017871 ABC transporter, conserved site Thimo_3430 IPR003439 ABC transporter-like Thimo_3430 IPR003593 AAA+ ATPase domain Thimo_3431 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_3431 IPR035906 MetI-like superfamily Thimo_3432 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_3432 IPR035906 MetI-like superfamily Thimo_3433 IPR006059 Bacterial extracellular solute-binding protein Thimo_3436 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA Thimo_3436 IPR005814 Aminotransferase class-III Thimo_3436 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_3436 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_3436 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3437 IPR011835 Bacterial/plant glycogen synthase Thimo_3437 IPR001296 Glycosyl transferase, family 1 Thimo_3437 IPR013534 Starch synthase, catalytic domain Thimo_3438 IPR017853 Glycoside hydrolase superfamily Thimo_3438 IPR013780 Glycosyl hydrolase, all-beta Thimo_3438 IPR014756 Immunoglobulin E-set Thimo_3438 IPR019492 Cyclo-malto-dextrinase, C-terminal Thimo_3438 IPR015171 Cyclomaltodextrinase, N-terminal Thimo_3438 IPR013783 Immunoglobulin-like fold Thimo_3438 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Thimo_3440 IPR002986 Diaminopimelate decarboxylase, LysA Thimo_3440 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Thimo_3440 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Thimo_3440 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Thimo_3440 IPR000183 Ornithine/DAP/Arg decarboxylase Thimo_3440 IPR029066 PLP-binding barrel Thimo_3440 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal Thimo_3440 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal Thimo_3442 IPR005135 Endonuclease/exonuclease/phosphatase Thimo_3442 IPR004808 AP endonuclease 1 Thimo_3442 IPR020847 AP endonuclease 1, binding site Thimo_3442 IPR020848 AP endonuclease 1, conserved site Thimo_3442 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_3442 IPR037493 Exodeoxyribonuclease III-like Thimo_3443 IPR006638 Elp3/MiaB/NifB Thimo_3443 IPR002792 TRAM domain Thimo_3443 IPR034557 Threonylcarbamoyladenosine tRNA methylthiotransferase Thimo_3443 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_3443 IPR007197 Radical SAM Thimo_3443 IPR006467 MiaB-like tRNA modifying enzyme Thimo_3443 IPR005839 Methylthiotransferase Thimo_3443 IPR038135 Methylthiotransferase, N-terminal domain superfamily Thimo_3443 IPR013848 Methylthiotransferase, N-terminal Thimo_3443 IPR020612 Methylthiotransferase, conserved site Thimo_3445 IPR035994 Nucleoside phosphorylase superfamily Thimo_3445 IPR000845 Nucleoside phosphorylase domain Thimo_3445 IPR010049 MTA/SAH nucleosidase Thimo_3451 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Thimo_3451 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3451 IPR004546 Restriction endonuclease, type I, HsdM Thimo_3451 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_3451 IPR003356 DNA methylase, adenine-specific Thimo_3451 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Thimo_3454 IPR007711 Toxin HigB-1 Thimo_3454 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_3459 IPR014057 Uncharacterized protein HI1420 Thimo_3459 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Thimo_3459 IPR001387 Cro/C1-type helix-turn-helix domain Thimo_3463 IPR028883 tRNA-specific adenosine deaminase Thimo_3463 IPR016193 Cytidine deaminase-like Thimo_3463 IPR002125 Cytidine and deoxycytidylate deaminase domain Thimo_3463 IPR016192 APOBEC/CMP deaminase, zinc-binding Thimo_3465 IPR001150 Glycine radical domain Thimo_3465 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic Thimo_3465 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Thimo_3465 IPR005144 ATP-cone domain Thimo_3469 IPR004276 Glycosyltransferase family 28, N-terminal domain Thimo_3469 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase Thimo_3473 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_3473 IPR003356 DNA methylase, adenine-specific Thimo_3473 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3477 IPR029151 Periplasmic sensor-like domain superfamily Thimo_3477 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Thimo_3477 IPR003660 HAMP domain Thimo_3477 IPR033479 Double Cache domain 1 Thimo_3481 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3481 IPR001036 Acriflavin resistance protein Thimo_3481 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Thimo_3483 IPR025985 YnbE-like lipoprotein Thimo_3492 IPR001029 Flagellin, D0/D1 domain Thimo_3492 IPR013384 Flagellar hook-associated protein 3 Thimo_3493 IPR002371 Flagellar hook-associated protein 1 Thimo_3493 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3493 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3493 IPR001444 Flagellar basal body rod protein, N-terminal Thimo_3494 IPR019301 Flagellar protein FlgJ, N-terminal Thimo_3494 IPR013377 Peptidoglycan hydrolase FlgJ Thimo_3494 IPR023346 Lysozyme-like domain superfamily Thimo_3494 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain Thimo_3495 IPR001782 Flagellar P-ring protein Thimo_3496 IPR000527 Flagellar L-ring protein Thimo_3497 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_3497 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Thimo_3497 IPR001444 Flagellar basal body rod protein, N-terminal Thimo_3497 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3497 IPR012834 Flagellar basal-body rod FlgG Thimo_3497 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3498 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Thimo_3498 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3498 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_3498 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3498 IPR001444 Flagellar basal body rod protein, N-terminal Thimo_3499 IPR037058 Flagellar hook protein FlgE superfamily Thimo_3499 IPR011491 Flagellar hook protein FlgE Thimo_3499 IPR001444 Flagellar basal body rod protein, N-terminal Thimo_3499 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3499 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_3499 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Thimo_3499 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3500 IPR025963 FlgD Tudor-like domain Thimo_3500 IPR005648 Flagellar hook capping protein Thimo_3500 IPR025965 FlgD Ig-like domain Thimo_3501 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3501 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3501 IPR006299 Flagellar basal-body rod protein FlgC Thimo_3501 IPR001444 Flagellar basal body rod protein, N-terminal Thimo_3502 IPR006300 Flagellar basal-body rod protein FlgB Thimo_3502 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3505 IPR011697 Peptidase C26 Thimo_3505 IPR017926 Glutamine amidotransferase Thimo_3505 IPR029062 Class I glutamine amidotransferase-like Thimo_3510 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Thimo_3510 IPR002646 Poly A polymerase, head domain Thimo_3510 IPR010206 Poly(A) polymerase I Thimo_3510 IPR025866 Polymerase A arginine-rich C-terminal domain Thimo_3511 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily Thimo_3511 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK Thimo_3512 IPR003700 Ketopantoate hydroxymethyltransferase Thimo_3512 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Thimo_3512 IPR040442 Pyruvate kinase-like domain superfamily Thimo_3513 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain Thimo_3513 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3513 IPR003721 Pantoate-beta-alanine ligase Thimo_3513 IPR004821 Cytidyltransferase-like domain Thimo_3514 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_3514 IPR003190 Aspartate decarboxylase Thimo_3515 IPR013534 Starch synthase, catalytic domain Thimo_3515 IPR001296 Glycosyl transferase, family 1 Thimo_3515 IPR011835 Bacterial/plant glycogen synthase Thimo_3516 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal Thimo_3516 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding Thimo_3516 IPR001282 Glucose-6-phosphate dehydrogenase Thimo_3516 IPR036291 NAD(P)-binding domain superfamily Thimo_3516 IPR019796 Glucose-6-phosphate dehydrogenase, active site Thimo_3517 IPR035476 Phosphoglucose isomerase, SIS domain 1 Thimo_3517 IPR035482 Phosphoglucose isomerase, SIS domain 2 Thimo_3517 IPR018189 Phosphoglucose isomerase, conserved site Thimo_3517 IPR023096 Phosphoglucose isomerase, C-terminal Thimo_3517 IPR001672 Phosphoglucose isomerase (PGI) Thimo_3518 IPR016230 Serine-protein kinase, PrkA Thimo_3518 IPR010650 PrkA C-terminal domain Thimo_3518 IPR013153 PrkA AAA domain Thimo_3518 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3519 IPR006698 Uncharacterised protein family UPF0229 Thimo_3520 IPR007390 Sporulation stage V, protein R Thimo_3521 IPR005490 L,D-transpeptidase catalytic domain Thimo_3521 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3522 IPR011761 ATP-grasp fold Thimo_3522 IPR021109 Aspartic peptidase domain superfamily Thimo_3522 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX Thimo_3522 IPR041107 RimK, PreATP-grasp domain Thimo_3522 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Thimo_3522 IPR013815 ATP-grasp fold, subdomain 1 Thimo_3522 IPR013651 ATP-grasp fold, RimK-type Thimo_3524 IPR011009 Protein kinase-like domain superfamily Thimo_3524 IPR002575 Aminoglycoside phosphotransferase Thimo_3527 IPR011946 Integrase, integron-type Thimo_3527 IPR002104 Integrase, catalytic domain Thimo_3527 IPR013762 Integrase-like, catalytic domain superfamily Thimo_3527 IPR011010 DNA breaking-rejoining enzyme, catalytic core Thimo_3527 IPR004107 Integrase, SAM-like, N-terminal Thimo_3527 IPR010998 Integrase/recombinase, N-terminal Thimo_3542 IPR000644 CBS domain Thimo_3542 IPR002550 CNNM, transmembrane domain Thimo_3545 IPR000763 Catalase-peroxidase haem Thimo_3545 IPR019794 Peroxidase, active site Thimo_3545 IPR010255 Haem peroxidase superfamily Thimo_3545 IPR002016 Haem peroxidase Thimo_3549 IPR002641 Patatin-like phospholipase domain Thimo_3549 IPR024282 Domain of unknown function DUF3376 Thimo_3549 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_3549 IPR019894 Patatin-related protein Thimo_3550 IPR000878 Tetrapyrrole methylase Thimo_3550 IPR035996 Tetrapyrrole methylase superfamily Thimo_3550 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_3550 IPR014776 Tetrapyrrole methylase, subdomain 2 Thimo_3550 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase Thimo_3550 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site Thimo_3552 IPR035996 Tetrapyrrole methylase superfamily Thimo_3552 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_3552 IPR000878 Tetrapyrrole methylase Thimo_3552 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase Thimo_3552 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3552 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit Thimo_3552 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase Thimo_3553 IPR003723 Precorrin-6x reductase Thimo_3554 IPR014776 Tetrapyrrole methylase, subdomain 2 Thimo_3554 IPR006363 Precorrin-3B C17-methyltransferase domain Thimo_3554 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_3554 IPR035996 Tetrapyrrole methylase superfamily Thimo_3554 IPR000878 Tetrapyrrole methylase Thimo_3555 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site Thimo_3555 IPR012382 Precorrin-2 C(20)-methyltransferase Thimo_3555 IPR035996 Tetrapyrrole methylase superfamily Thimo_3555 IPR014777 Tetrapyrrole methylase, subdomain 1 Thimo_3555 IPR006364 Precorrin-2 C(20)-methyltransferase domain Thimo_3555 IPR014776 Tetrapyrrole methylase, subdomain 2 Thimo_3555 IPR000878 Tetrapyrrole methylase Thimo_3556 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily Thimo_3556 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC Thimo_3557 IPR006290 Heavy metal sensor kinase Thimo_3557 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3557 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3557 IPR003660 HAMP domain Thimo_3557 IPR005467 Histidine kinase domain Thimo_3557 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3557 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3557 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3558 IPR011006 CheY-like superfamily Thimo_3558 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3558 IPR039420 Transcriptional regulatory protein WalR-like Thimo_3558 IPR001789 Signal transduction response regulator, receiver domain Thimo_3558 IPR001867 OmpR/PhoB-type DNA-binding domain Thimo_3558 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response Thimo_3562 IPR000572 Oxidoreductase, molybdopterin-binding domain Thimo_3562 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily Thimo_3563 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Thimo_3563 IPR016174 Di-haem cytochrome, transmembrane Thimo_3566 IPR016181 Acyl-CoA N-acyltransferase Thimo_3566 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal Thimo_3566 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Thimo_3568 IPR029762 Pyroglutamyl peptidase I, bacterial-type Thimo_3568 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily Thimo_3568 IPR033693 Pyroglutamyl peptidase I, Glu active site Thimo_3568 IPR033694 Pyroglutamyl peptidase I, Cys active site Thimo_3568 IPR000816 Peptidase C15, pyroglutamyl peptidase I Thimo_3568 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like Thimo_3573 IPR017871 ABC transporter, conserved site Thimo_3573 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3573 IPR039421 Type I protein exporter Thimo_3573 IPR003593 AAA+ ATPase domain Thimo_3573 IPR011527 ABC transporter type 1, transmembrane domain Thimo_3573 IPR036640 ABC transporter type 1, transmembrane domain superfamily Thimo_3573 IPR003439 ABC transporter-like Thimo_3589 IPR017932 Glutamine amidotransferase type 2 domain Thimo_3589 IPR033738 Asparagine synthase, N-terminal domain Thimo_3589 IPR001962 Asparagine synthase Thimo_3589 IPR006426 Asparagine synthase, glutamine-hydrolyzing Thimo_3589 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3597 IPR017782 Hydroxyacylglutathione hydrolase Thimo_3597 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain Thimo_3597 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3597 IPR001279 Metallo-beta-lactamase Thimo_3597 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain Thimo_3598 IPR005990 Inosine-5'-monophosphate dehydrogenase Thimo_3598 IPR000644 CBS domain Thimo_3598 IPR013785 Aldolase-type TIM barrel Thimo_3598 IPR015875 IMP dehydrogenase / GMP reductase, conserved site Thimo_3598 IPR001093 IMP dehydrogenase/GMP reductase Thimo_3599 IPR029062 Class I glutamine amidotransferase-like Thimo_3599 IPR025777 GMP synthetase ATP pyrophosphatase domain Thimo_3599 IPR004739 GMP synthase, glutamine amidotransferase Thimo_3599 IPR017926 Glutamine amidotransferase Thimo_3599 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3599 IPR001674 GMP synthase, C-terminal Thimo_3599 IPR022310 NAD/GMP synthase Thimo_3599 IPR022955 GMP synthase Thimo_3601 IPR001509 NAD-dependent epimerase/dehydratase Thimo_3601 IPR036291 NAD(P)-binding domain superfamily Thimo_3602 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Thimo_3602 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Thimo_3602 IPR017476 UDP-glucose/GDP-mannose dehydrogenase Thimo_3602 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Thimo_3602 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_3602 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Thimo_3602 IPR036291 NAD(P)-binding domain superfamily Thimo_3602 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase Thimo_3603 IPR018485 Carbohydrate kinase, FGGY, C-terminal Thimo_3604 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF Thimo_3604 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 Thimo_3605 IPR013088 Zinc finger, NHR/GATA-type Thimo_3605 IPR005584 DNA gyrase inhibitor YacG Thimo_3606 IPR009777 Cell division protein ZapD Thimo_3606 IPR036268 ZapD domain superfamily Thimo_3606 IPR027462 Z ring-associated protein D, C-terminal Thimo_3607 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily Thimo_3607 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Thimo_3607 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal Thimo_3607 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site Thimo_3607 IPR017459 Glycosyl transferase family 3, N-terminal domain Thimo_3607 IPR000312 Glycosyl transferase, family 3 Thimo_3607 IPR028579 Putative thymidine phosphorylase Thimo_3607 IPR013466 Thymidine phosphorylase/AMP phosphorylase Thimo_3607 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase Thimo_3607 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Thimo_3608 IPR029057 Phosphoribosyltransferase-like Thimo_3608 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site Thimo_3608 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type Thimo_3608 IPR005946 Ribose-phosphate pyrophosphokinase Thimo_3608 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain Thimo_3608 IPR000836 Phosphoribosyltransferase domain Thimo_3609 IPR002876 Transcriptional regulator TACO1-like Thimo_3609 IPR029072 YebC-like Thimo_3609 IPR017856 Integrase-like, N-terminal Thimo_3609 IPR026564 Transcriptional regulator TACO1-like, domain 3 Thimo_3610 IPR036397 Ribonuclease H superfamily Thimo_3610 IPR002176 Crossover junction endodeoxyribonuclease RuvC Thimo_3610 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site Thimo_3610 IPR012337 Ribonuclease H-like superfamily Thimo_3611 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Thimo_3611 IPR012340 Nucleic acid-binding, OB-fold Thimo_3611 IPR000085 Bacterial DNA recombination protein RuvA Thimo_3611 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial Thimo_3611 IPR010994 RuvA domain 2-like Thimo_3611 IPR011114 Holliday junction DNA helicase RuvA, C-terminal Thimo_3611 IPR036267 RuvA, C-terminal domain superfamily Thimo_3612 IPR016187 C-type lectin fold Thimo_3612 IPR011009 Protein kinase-like domain superfamily Thimo_3612 IPR000719 Protein kinase domain Thimo_3612 IPR005532 Sulfatase-modifying factor enzyme Thimo_3612 IPR042095 Sulfatase-modifying factor enzyme superfamily Thimo_3613 IPR034122 Retropepsin-like domain, bacterial Thimo_3613 IPR021109 Aspartic peptidase domain superfamily Thimo_3613 IPR011969 Clan AA aspartic peptidase, C-terminal Thimo_3613 IPR001969 Aspartic peptidase, active site Thimo_3614 IPR029061 Thiamin diphosphate-binding fold Thimo_3614 IPR012846 Acetolactate synthase, large subunit, biosynthetic Thimo_3614 IPR012000 Thiamine pyrophosphate enzyme, central domain Thimo_3614 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_3614 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Thimo_3614 IPR039368 Acetolactate synthase large subunit, TPP binding domain Thimo_3614 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Thimo_3616 IPR008978 HSP20-like chaperone Thimo_3616 IPR031107 Small heat shock protein HSP20 Thimo_3616 IPR002068 Alpha crystallin/Hsp20 domain Thimo_3617 IPR008978 HSP20-like chaperone Thimo_3617 IPR002068 Alpha crystallin/Hsp20 domain Thimo_3618 IPR006361 Uroporphyrinogen decarboxylase HemE Thimo_3618 IPR038071 UROD/MetE-like superfamily Thimo_3618 IPR000257 Uroporphyrinogen decarboxylase (URO-D) Thimo_3619 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria Thimo_3619 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_3619 IPR013325 RNA polymerase sigma factor, region 2 Thimo_3619 IPR007630 RNA polymerase sigma-70 region 4 Thimo_3619 IPR007627 RNA polymerase sigma-70 region 2 Thimo_3619 IPR009042 RNA polymerase sigma-70 region 1.2 Thimo_3619 IPR000943 RNA polymerase sigma-70 Thimo_3619 IPR014284 RNA polymerase sigma-70 like domain Thimo_3620 IPR040690 FtsX, extracellular domain Thimo_3620 IPR004513 Cell division protein FtsX Thimo_3621 IPR003593 AAA+ ATPase domain Thimo_3621 IPR017871 ABC transporter, conserved site Thimo_3621 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3621 IPR005286 Cell division protein FtsE, ATP-binding Thimo_3621 IPR003439 ABC transporter-like Thimo_3622 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3622 IPR036225 SRP/SRP receptor, N-terminal Thimo_3622 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain Thimo_3622 IPR003593 AAA+ ATPase domain Thimo_3622 IPR004390 Signal-recognition particle receptor FtsY Thimo_3622 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily Thimo_3622 IPR013822 Signal recognition particle SRP54, helical bundle Thimo_3623 IPR011765 Peptidase M16, N-terminal Thimo_3623 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like Thimo_3623 IPR007863 Peptidase M16, C-terminal Thimo_3623 IPR001431 Peptidase M16, zinc-binding site Thimo_3624 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like Thimo_3624 IPR007863 Peptidase M16, C-terminal Thimo_3625 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3625 IPR004398 RNA methyltransferase, RsmD Thimo_3625 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Thimo_3626 IPR001980 Phosphopantetheine adenylyltransferase Thimo_3626 IPR004821 Cytidyltransferase-like domain Thimo_3626 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3627 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3627 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3628 IPR000150 Cof family Thimo_3628 IPR036412 HAD-like superfamily Thimo_3628 IPR006379 HAD-superfamily hydrolase, subfamily IIB Thimo_3628 IPR023214 HAD superfamily Thimo_3629 IPR035937 MutM-like, N-terminal Thimo_3629 IPR010663 Zinc finger, FPG/IleRS-type Thimo_3629 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain Thimo_3629 IPR020629 Formamidopyrimidine-DNA glycosylase Thimo_3629 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site Thimo_3629 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding Thimo_3629 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type Thimo_3629 IPR010979 Ribosomal protein S13-like, H2TH Thimo_3631 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Thimo_3631 IPR006847 Translation initiation factor IF-2, N-terminal Thimo_3631 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3631 IPR005225 Small GTP-binding protein domain Thimo_3631 IPR000795 Transcription factor, GTP-binding domain Thimo_3631 IPR000178 Translation initiation factor aIF-2, bacterial-like Thimo_3631 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_3631 IPR015760 Translation initiation factor IF- 2 Thimo_3631 IPR023115 Translation initiation factor IF- 2, domain 3 Thimo_3634 IPR036291 NAD(P)-binding domain superfamily Thimo_3634 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 IPR020904 Short-chain dehydrogenase/reductase, conserved site Thimo_3635 IPR014122 Demethylmenaquinone methyltransferase Thimo_3635 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3635 IPR004033 UbiE/COQ5 methyltransferase Thimo_3635 IPR023576 UbiE/COQ5 methyltransferase, conserved site Thimo_3636 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Thimo_3636 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_3639 IPR036412 HAD-like superfamily Thimo_3639 IPR023214 HAD superfamily Thimo_3639 IPR023190 Phosphoserine phosphatase, domain 2 Thimo_3639 IPR002912 ACT domain Thimo_3642 IPR006001 Carbohydrate kinase, thermoresistant glucokinase Thimo_3642 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3643 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific Thimo_3643 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3643 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3644 IPR004952 Uncharacterised protein family UPF0460 Thimo_3645 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_3645 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3645 IPR034169 NifX-like domain Thimo_3646 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein Thimo_3646 IPR000318 Nitrogenase component 1, conserved site Thimo_3646 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3647 IPR000510 Nitrogenase/oxidoreductase, component 1 Thimo_3647 IPR000318 Nitrogenase component 1, conserved site Thimo_3647 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE Thimo_3650 IPR005256 Anthranilate synthase component I, PabB-like Thimo_3650 IPR019999 Anthranilate synthase component I-like Thimo_3650 IPR015890 Chorismate-utilising enzyme, C-terminal Thimo_3650 IPR005801 ADC synthase Thimo_3650 IPR006805 Anthranilate synthase component I, N-terminal Thimo_3651 IPR006439 HAD hydrolase, subfamily IA Thimo_3651 IPR037512 Phosphoglycolate phosphatase, prokaryotic Thimo_3651 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic Thimo_3651 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_3651 IPR023214 HAD superfamily Thimo_3651 IPR036412 HAD-like superfamily Thimo_3651 IPR041492 Haloacid dehalogenase-like hydrolase Thimo_3652 IPR013785 Aldolase-type TIM barrel Thimo_3652 IPR026019 Ribulose-phosphate 3-epimerase Thimo_3652 IPR011060 Ribulose-phosphate binding barrel Thimo_3652 IPR000056 Ribulose-phosphate 3-epimerase-like Thimo_3653 IPR036812 NADP-dependent oxidoreductase domain superfamily Thimo_3653 IPR023210 NADP-dependent oxidoreductase domain Thimo_3653 IPR020471 Aldo/keto reductase Thimo_3654 IPR005222 Competence protein ComF Thimo_3654 IPR000836 Phosphoribosyltransferase domain Thimo_3654 IPR029057 Phosphoribosyltransferase-like Thimo_3657 IPR003439 ABC transporter-like Thimo_3657 IPR017871 ABC transporter, conserved site Thimo_3657 IPR000644 CBS domain Thimo_3657 IPR005892 Glycine betaine transport ATP-binding subunit Thimo_3657 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3657 IPR003593 AAA+ ATPase domain Thimo_3658 IPR035906 MetI-like superfamily Thimo_3658 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Thimo_3659 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Thimo_3661 IPR000060 BCCT transporter family Thimo_3665 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3665 IPR036670 SecA, preprotein cross-linking domain superfamily Thimo_3665 IPR000185 Protein translocase subunit SecA Thimo_3665 IPR014018 SecA motor DEAD Thimo_3665 IPR011130 SecA, preprotein cross-linking domain Thimo_3665 IPR004027 SEC-C motif Thimo_3665 IPR011116 SecA Wing/Scaffold Thimo_3665 IPR011115 SecA DEAD-like, N-terminal Thimo_3665 IPR036266 SecA, Wing/Scaffold superfamily Thimo_3666 IPR002813 Arginine biosynthesis protein ArgJ Thimo_3666 IPR042195 ArgJ beta chain, C-terminal domain Thimo_3666 IPR016117 ArgJ-like domain superfamily Thimo_3667 IPR020476 NUDIX hydrolase Thimo_3667 IPR015797 NUDIX hydrolase-like domain superfamily Thimo_3667 IPR020084 NUDIX hydrolase, conserved site Thimo_3667 IPR000086 NUDIX hydrolase domain Thimo_3667 IPR003561 Mutator MutT Thimo_3668 IPR029062 Class I glutamine amidotransferase-like Thimo_3668 IPR006287 Protein/nucleic acid deglycase DJ-1 Thimo_3668 IPR002818 DJ-1/PfpI Thimo_3669 IPR029045 ClpP/crotonase-like domain superfamily Thimo_3669 IPR005151 Tail specific protease Thimo_3669 IPR004447 C-terminal-processing peptidase S41A Thimo_3669 IPR036034 PDZ superfamily Thimo_3669 IPR001478 PDZ domain Thimo_3670 IPR011055 Duplicated hybrid motif Thimo_3670 IPR016047 Peptidase M23 Thimo_3671 IPR011991 ArsR-like helix-turn-helix domain Thimo_3671 IPR001845 HTH ArsR-type DNA-binding domain Thimo_3671 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3671 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3672 IPR001763 Rhodanese-like domain Thimo_3672 IPR036873 Rhodanese-like domain superfamily Thimo_3673 IPR035958 SecB-like superfamily Thimo_3673 IPR003708 Bacterial protein export chaperone SecB Thimo_3674 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal Thimo_3674 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal Thimo_3674 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent Thimo_3674 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Thimo_3674 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Thimo_3674 IPR036291 NAD(P)-binding domain superfamily Thimo_3675 IPR001537 tRNA/rRNA methyltransferase, SpoU type Thimo_3675 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_3675 IPR029028 Alpha/beta knot methyltransferases Thimo_3675 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase Thimo_3676 IPR013785 Aldolase-type TIM barrel Thimo_3676 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 Thimo_3676 IPR024920 Dihydroorotate dehydrogenase, class 1 Thimo_3676 IPR005720 Dihydroorotate dehydrogenase domain Thimo_3676 IPR023359 Dihydroorotate dehydrogenase A, chain A, domain 2 Thimo_3676 IPR033888 Dihydroorotate dehydrogenase, class 1B Thimo_3676 IPR001295 Dihydroorotate dehydrogenase, conserved site Thimo_3679 IPR025944 Sigma-54 interaction domain, conserved site Thimo_3679 IPR010114 DNA-binding transcriptional regulator NtrC Thimo_3679 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_3679 IPR003593 AAA+ ATPase domain Thimo_3679 IPR002078 RNA polymerase sigma factor 54 interaction domain Thimo_3679 IPR001789 Signal transduction response regulator, receiver domain Thimo_3679 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3679 IPR002197 DNA binding HTH domain, Fis-type Thimo_3679 IPR009057 Homeobox-like domain superfamily Thimo_3679 IPR011006 CheY-like superfamily Thimo_3679 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_3680 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Thimo_3680 IPR013767 PAS fold Thimo_3680 IPR035965 PAS domain superfamily Thimo_3680 IPR000014 PAS domain Thimo_3680 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Thimo_3680 IPR005467 Histidine kinase domain Thimo_3680 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3680 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Thimo_3680 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3682 IPR001637 Glutamine synthetase class-I, adenylation site Thimo_3682 IPR008147 Glutamine synthetase, beta-Grasp domain Thimo_3682 IPR036651 Glutamine synthetase, N-terminal domain superfamily Thimo_3682 IPR027302 Glutamine synthetase, N-terminal conserved site Thimo_3682 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Thimo_3682 IPR008146 Glutamine synthetase, catalytic domain Thimo_3682 IPR027303 Glutamine synthetase, glycine-rich site Thimo_3682 IPR004809 Glutamine synthetase type I Thimo_3683 IPR002524 Cation efflux protein Thimo_3683 IPR027470 Cation efflux protein, cytoplasmic domain Thimo_3683 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Thimo_3683 IPR027469 Cation efflux transmembrane domain superfamily Thimo_3685 IPR015944 Glycine-tRNA ligase, beta subunit Thimo_3685 IPR008909 DALR anticodon binding Thimo_3685 IPR006194 Glycine-tRNA synthetase, heterodimeric Thimo_3686 IPR036412 HAD-like superfamily Thimo_3686 IPR023214 HAD superfamily Thimo_3686 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Thimo_3686 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase Thimo_3686 IPR006543 Histidinol-phosphate phosphatase Thimo_3690 IPR003325 TerD domain Thimo_3692 IPR003325 TerD domain Thimo_3693 IPR003325 TerD domain Thimo_3694 IPR017115 Tellurite resistance, TerA Thimo_3694 IPR003325 TerD domain Thimo_3697 IPR028157 PELOTA RNA-binding domain Thimo_3697 IPR011215 Phosphoribosyl transferase Thimo_3699 IPR005835 Nucleotidyl transferase domain Thimo_3699 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3701 IPR031168 TrmE-type guanine nucleotide-binding domain Thimo_3701 IPR018948 GTP-binding protein TrmE, N-terminal Thimo_3701 IPR006073 GTP binding domain Thimo_3701 IPR027368 tRNA modification GTPase MnmE domain 2 Thimo_3701 IPR025867 MnmE, helical domain Thimo_3701 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3701 IPR005225 Small GTP-binding protein domain Thimo_3701 IPR004520 tRNA modification GTPase MnmE Thimo_3701 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 Thimo_3702 IPR019998 Membrane insertase YidC Thimo_3702 IPR038210 Membrane insertase YidC, periplasmic domain Thimo_3702 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 Thimo_3702 IPR028053 Membrane insertase YidC, N-terminal Thimo_3702 IPR038221 YidC, periplasmic domain superfamily Thimo_3702 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Thimo_3710 IPR013785 Aldolase-type TIM barrel Thimo_3710 IPR025895 Lysine-2,3-aminomutase, C-terminal domain Thimo_3710 IPR007197 Radical SAM Thimo_3710 IPR022459 Lysine-2,3-aminomutase Thimo_3710 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Thimo_3711 IPR013815 ATP-grasp fold, subdomain 1 Thimo_3711 IPR011095 D-alanine--D-alanine ligase, C-terminal Thimo_3711 IPR011761 ATP-grasp fold Thimo_3711 IPR016185 Pre-ATP-grasp domain superfamily Thimo_3713 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Thimo_3713 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_3713 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA Thimo_3713 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_3714 IPR012773 Ectoine biosynthetic protein Thimo_3714 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Thimo_3714 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Thimo_3714 IPR005814 Aminotransferase class-III Thimo_3714 IPR004637 2,4-diaminobutyrate 4-transaminase Thimo_3714 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3718 IPR024463 Transposase TnpC, homeodomain Thimo_3718 IPR039552 Transposase IS66, C-terminal Thimo_3718 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3718 IPR024474 Zinc-finger binding domain of transposase IS66 Thimo_3718 IPR004291 Transposase, IS66 Thimo_3721 IPR013610 Domain of unknown function DUF1738 Thimo_3721 IPR006171 TOPRIM domain Thimo_3721 IPR034154 Archaeal primase DnaG/twinkle, TOPRIM domain Thimo_3721 IPR041459 Polyvalent protein, metallopeptidase domain Thimo_3726 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3728 IPR022789 Antitoxin ParD Thimo_3728 IPR038296 Antitoxin ParD superfamily Thimo_3728 IPR010985 Ribbon-helix-helix Thimo_3730 IPR039552 Transposase IS66, C-terminal Thimo_3730 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3730 IPR004291 Transposase, IS66 Thimo_3730 IPR024463 Transposase TnpC, homeodomain Thimo_3730 IPR024474 Zinc-finger binding domain of transposase IS66 Thimo_3733 IPR001405 Uncharacterised protein family UPF0758 Thimo_3733 IPR010994 RuvA domain 2-like Thimo_3733 IPR037518 MPN domain Thimo_3733 IPR020891 Uncharacterised protein family UPF0758, conserved site Thimo_3733 IPR025657 RadC-like JAB domain Thimo_3738 IPR041468 ParB/Spo0J, HTH domain Thimo_3738 IPR004437 ParB/RepB/Spo0J partition protein Thimo_3738 IPR003115 ParB/Sulfiredoxin Thimo_3738 IPR036086 ParB/Sulfiredoxin superfamily Thimo_3739 IPR025669 AAA domain Thimo_3739 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3743 IPR025657 RadC-like JAB domain Thimo_3743 IPR037518 MPN domain Thimo_3743 IPR020891 Uncharacterised protein family UPF0758, conserved site Thimo_3743 IPR001405 Uncharacterised protein family UPF0758 Thimo_3743 IPR010994 RuvA domain 2-like Thimo_3744 IPR041682 AAA domain, group 14 Thimo_3744 IPR025420 Domain of unknown function DUF4143 Thimo_3744 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3748 IPR000525 Initiator Rep protein Thimo_3748 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3748 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3749 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Thimo_3749 IPR020449 Transcription regulator HTH, AraC- type Thimo_3749 IPR018060 DNA binding HTH domain, AraC-type Thimo_3749 IPR009057 Homeobox-like domain superfamily Thimo_3753 IPR003593 AAA+ ATPase domain Thimo_3753 IPR004346 CagE, TrbE, VirB component of type IV transporter system Thimo_3753 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain Thimo_3753 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3759 IPR033645 VirB9/CagX/TrbG, C-terminal Thimo_3759 IPR014148 P-type conjugative transfer protein VirB9 Thimo_3759 IPR010258 Conjugal transfer, TrbG/VirB9/CagX Thimo_3759 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily Thimo_3760 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Thimo_3760 IPR042217 Type IV secretion system, VirB10/TrbI Thimo_3761 IPR001482 Type II/IV secretion system protein Thimo_3761 IPR003593 AAA+ ATPase domain Thimo_3761 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3761 IPR014155 Type IV secretion system protein VirB11 Thimo_3762 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3762 IPR003688 Type IV secretion system protein TraG/VirD4 Thimo_3766 IPR002104 Integrase, catalytic domain Thimo_3766 IPR013762 Integrase-like, catalytic domain superfamily Thimo_3766 IPR011010 DNA breaking-rejoining enzyme, catalytic core Thimo_3766 IPR010998 Integrase/recombinase, N-terminal Thimo_3766 IPR004107 Integrase, SAM-like, N-terminal Thimo_3766 IPR011931 Tyrosine recombinase XerC Thimo_3766 IPR023009 Tyrosine recombinase XerC/XerD Thimo_3767 IPR025669 AAA domain Thimo_3767 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3771 IPR024474 Zinc-finger binding domain of transposase IS66 Thimo_3771 IPR024463 Transposase TnpC, homeodomain Thimo_3771 IPR039552 Transposase IS66, C-terminal Thimo_3771 IPR004291 Transposase, IS66 Thimo_3771 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3774 IPR000477 Reverse transcriptase domain