locus-tag class description Thimo_0001 PF01809 Putative membrane protein insertion efficiency factor Thimo_0002 PF00825 Ribonuclease P Thimo_0003 PF11638 DnaA N-terminal domain Thimo_0003 PF08299 Bacterial dnaA protein helix-turn-helix Thimo_0003 PF00308 Bacterial dnaA protein Thimo_0004 PF00712 DNA polymerase III beta subunit, N-terminal domain Thimo_0004 PF02767 DNA polymerase III beta subunit, central domain Thimo_0004 PF02768 DNA polymerase III beta subunit, C-terminal domain Thimo_0005 PF11842 Domain of unknown function (DUF3362) Thimo_0005 PF04055 Radical SAM superfamily Thimo_0005 PF08497 Radical SAM N-terminal Thimo_0006 PF03781 Sulfatase-modifying factor enzyme 1 Thimo_0006 PF12867 DinB superfamily Thimo_0007 PF10017 Histidine-specific methyltransferase, SAM-dependent Thimo_0009 PF03050 Transposase IS66 family Thimo_0009 PF13817 IS66 C-terminal element Thimo_0009 PF13007 Transposase C of IS166 homeodomain Thimo_0009 PF13005 zinc-finger binding domain of transposase IS66 Thimo_0013 PF07963 Prokaryotic N-terminal methylation motif Thimo_0013 PF00114 Pilin (bacterial filament) Thimo_0015 PF00535 Glycosyl transferase family 2 Thimo_0017 PF13579 Glycosyl transferase 4-like domain Thimo_0017 PF00534 Glycosyl transferases group 1 Thimo_0019 PF13439 Glycosyltransferase Family 4 Thimo_0028 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thimo_0035 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_0036 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thimo_0036 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thimo_0038 PF01850 PIN domain Thimo_0040 PF00950 ABC 3 transport family Thimo_0041 PF00005 ABC transporter Thimo_0042 PF01297 Zinc-uptake complex component A periplasmic Thimo_0043 PF07475 HPr Serine kinase C-terminal domain Thimo_0043 PF02603 HPr Serine kinase N terminus Thimo_0044 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thimo_0044 PF00437 Type II/IV secretion system protein Thimo_0045 PF00482 Type II secretion system (T2SS), protein F Thimo_0046 PF07963 Prokaryotic N-terminal methylation motif Thimo_0046 PF08334 Type II secretion system (T2SS), protein G Thimo_0047 PF12019 Type II transport protein GspH Thimo_0048 PF07963 Prokaryotic N-terminal methylation motif Thimo_0050 PF03934 Type II secretion system (T2SS), protein K Thimo_0051 PF05137 Fimbrial assembly protein (PilN) Thimo_0054 PF00263 Bacterial type II and III secretion system protein Thimo_0054 PF03958 Bacterial type II/III secretion system short domain Thimo_0055 PF03109 ABC1 family Thimo_0056 PF02036 SCP-2 sterol transfer family Thimo_0057 PF01209 ubiE/COQ5 methyltransferase family Thimo_0058 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thimo_0058 PF05362 Lon protease (S16) C-terminal proteolytic domain Thimo_0058 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_0060 PF00795 Carbon-nitrogen hydrolase Thimo_0063 PF02875 Mur ligase family, glutamate ligase domain Thimo_0063 PF08245 Mur ligase middle domain Thimo_0063 PF01225 Mur ligase family, catalytic domain Thimo_0064 PF02441 Flavoprotein Thimo_0068 PF09335 SNARE associated Golgi protein Thimo_0069 PF00202 Aminotransferase class-III Thimo_0070 PF02581 Thiamine monophosphate synthase Thimo_0071 PF08543 Phosphomethylpyrimidine kinase Thimo_0071 PF02581 Thiamine monophosphate synthase Thimo_0072 PF00301 Rubredoxin Thimo_0074 PF01521 Iron-sulphur cluster biosynthesis Thimo_0075 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thimo_0075 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thimo_0076 PF13361 UvrD-like helicase C-terminal domain Thimo_0076 PF00580 UvrD/REP helicase N-terminal domain Thimo_0077 PF03480 Bacterial extracellular solute-binding protein, family 7 Thimo_0078 PF04055 Radical SAM superfamily Thimo_0078 PF06969 HemN C-terminal domain Thimo_0079 PF01197 Ribosomal protein L31 Thimo_0081 PF00285 Citrate synthase, C-terminal domain Thimo_0087 PF07660 Secretin and TonB N terminus short domain Thimo_0087 PF11741 AMIN domain Thimo_0087 PF00263 Bacterial type II and III secretion system protein Thimo_0087 PF03958 Bacterial type II/III secretion system short domain Thimo_0088 PF01202 Shikimate kinase Thimo_0089 PF01761 3-dehydroquinate synthase Thimo_0090 PF01493 GXGXG motif Thimo_0090 PF01645 Conserved region in glutamate synthase Thimo_0090 PF04898 Glutamate synthase central domain Thimo_0090 PF00310 Glutamine amidotransferases class-II Thimo_0091 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_0091 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thimo_0092 PF00578 AhpC/TSA family Thimo_0093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0093 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0093 PF09308 LuxQ, periplasmic Thimo_0093 PF00072 Response regulator receiver domain Thimo_0094 PF00072 Response regulator receiver domain Thimo_0096 PF17284 Spermidine synthase tetramerisation domain Thimo_0097 PF00909 Ammonium Transporter Family Thimo_0098 PF00543 Nitrogen regulatory protein P-II Thimo_0101 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thimo_0101 PF01078 Magnesium chelatase, subunit ChlI Thimo_0102 PF00005 ABC transporter Thimo_0102 PF12848 ABC transporter Thimo_0103 PF00343 Carbohydrate phosphorylase Thimo_0105 PF17820 PDZ domain Thimo_0105 PF02163 Peptidase family M50 Thimo_0106 PF03099 Biotin/lipoate A/B protein ligase family Thimo_0106 PF02237 Biotin protein ligase C terminal domain Thimo_0107 PF00563 EAL domain Thimo_0107 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0107 PF03707 Bacterial signalling protein N terminal repeat Thimo_0110 PF13181 Tetratricopeptide repeat Thimo_0110 PF01435 Peptidase family M48 Thimo_0113 PF02082 Transcriptional regulator Thimo_0116 PF01594 AI-2E family transporter Thimo_0118 PF05685 Putative restriction endonuclease Thimo_0119 PF05378 Hydantoinase/oxoprolinase N-terminal region Thimo_0119 PF01968 Hydantoinase/oxoprolinase Thimo_0120 PF00793 DAHP synthetase I family Thimo_0121 PF00210 Ferritin-like domain Thimo_0122 PF02464 Competence-damaged protein Thimo_0122 PF18146 Damage-inducible protein CinA KH domain Thimo_0122 PF00994 Probable molybdopterin binding domain Thimo_0123 PF00255 Glutathione peroxidase Thimo_0124 PF00970 Oxidoreductase FAD-binding domain Thimo_0124 PF00175 Oxidoreductase NAD-binding domain Thimo_0126 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Thimo_0127 PF00535 Glycosyl transferase family 2 Thimo_0128 PF00011 Hsp20/alpha crystallin family Thimo_0129 PF00595 PDZ domain Thimo_0129 PF13180 PDZ domain Thimo_0131 PF05494 MlaC protein Thimo_0133 PF00490 Delta-aminolevulinic acid dehydratase Thimo_0134 PF08501 Shikimate dehydrogenase substrate binding domain Thimo_0134 PF01488 Shikimate / quinate 5-dehydrogenase Thimo_0134 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Thimo_0135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thimo_0135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Thimo_0143 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thimo_0143 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thimo_0144 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thimo_0144 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thimo_0145 PF02635 DsrE/DsrF-like family Thimo_0146 PF02635 DsrE/DsrF-like family Thimo_0148 PF04358 DsrC like protein Thimo_0151 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thimo_0151 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_0153 PF13247 4Fe-4S dicluster domain Thimo_0155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0155 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thimo_0157 PF01593 Flavin containing amine oxidoreductase Thimo_0158 PF00106 short chain dehydrogenase Thimo_0160 PF00753 Metallo-beta-lactamase superfamily Thimo_0165 PF07728 AAA domain (dynein-related subfamily) Thimo_0165 PF08406 CbbQ/NirQ/NorQ C-terminal Thimo_0167 PF00092 von Willebrand factor type A domain Thimo_0169 PF03193 RsgA GTPase Thimo_0171 PF13344 Haloacid dehalogenase-like hydrolase Thimo_0175 PF00118 TCP-1/cpn60 chaperonin family Thimo_0176 PF00166 Chaperonin 10 Kd subunit Thimo_0178 PF03091 CutA1 divalent ion tolerance protein Thimo_0179 PF02683 Cytochrome C biogenesis protein transmembrane region Thimo_0179 PF11412 Disulphide bond corrector protein DsbC Thimo_0181 PF01220 Dehydroquinase class II Thimo_0182 PF00364 Biotin-requiring enzyme Thimo_0183 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thimo_0183 PF00289 Biotin carboxylase, N-terminal domain Thimo_0183 PF02785 Biotin carboxylase C-terminal domain Thimo_0185 PF01207 Dihydrouridine synthase (Dus) Thimo_0186 PF02954 Bacterial regulatory protein, Fis family Thimo_0187 PF01808 AICARFT/IMPCHase bienzyme Thimo_0187 PF02142 MGS-like domain Thimo_0188 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_0188 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Thimo_0189 PF02843 Phosphoribosylglycinamide synthetase, C domain Thimo_0189 PF02844 Phosphoribosylglycinamide synthetase, N domain Thimo_0189 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thimo_0190 PF08496 Peptidase family S49 N-terminal Thimo_0190 PF01343 Peptidase family S49 Thimo_0191 PF03772 Competence protein Thimo_0191 PF00753 Metallo-beta-lactamase superfamily Thimo_0193 PF00005 ABC transporter Thimo_0194 PF12704 MacB-like periplasmic core domain Thimo_0194 PF02687 FtsX-like permease family Thimo_0195 PF04371 Porphyromonas-type peptidyl-arginine deiminase Thimo_0197 PF00375 Sodium:dicarboxylate symporter family Thimo_0199 PF01381 Helix-turn-helix Thimo_0208 PF04608 Phosphatidylglycerophosphatase A Thimo_0209 PF02769 AIR synthase related protein, C-terminal domain Thimo_0209 PF00586 AIR synthase related protein, N-terminal domain Thimo_0210 PF01029 NusB family Thimo_0211 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thimo_0212 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thimo_0212 PF00925 GTP cyclohydrolase II Thimo_0213 PF00677 Lumazine binding domain Thimo_0218 PF00486 Transcriptional regulatory protein, C terminal Thimo_0218 PF00072 Response regulator receiver domain Thimo_0219 PF08521 Two-component sensor kinase N-terminal Thimo_0219 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0223 PF03063 Prismane/CO dehydrogenase family Thimo_0225 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_0226 PF00005 ABC transporter Thimo_0229 PF04060 Putative Fe-S cluster Thimo_0229 PF13187 4Fe-4S dicluster domain Thimo_0230 PF02508 Rnf-Nqr subunit, membrane protein Thimo_0231 PF02508 Rnf-Nqr subunit, membrane protein Thimo_0232 PF04205 FMN-binding domain Thimo_0233 PF03116 NQR2, RnfD, RnfE family Thimo_0234 PF13375 RnfC Barrel sandwich hybrid domain Thimo_0234 PF13237 4Fe-4S dicluster domain Thimo_0234 PF10531 SLBB domain Thimo_0234 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thimo_0235 PF02629 CoA binding domain Thimo_0235 PF00549 CoA-ligase Thimo_0236 PF08442 ATP-grasp domain Thimo_0236 PF00549 CoA-ligase Thimo_0237 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thimo_0237 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thimo_0237 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Thimo_0238 PF02233 NAD(P) transhydrogenase beta subunit Thimo_0239 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Thimo_0239 PF00056 lactate/malate dehydrogenase, NAD binding domain Thimo_0241 PF00549 CoA-ligase Thimo_0241 PF08442 ATP-grasp domain Thimo_0242 PF02629 CoA binding domain Thimo_0242 PF00549 CoA-ligase Thimo_0243 PF00330 Aconitase family (aconitate hydratase) Thimo_0244 PF03971 Monomeric isocitrate dehydrogenase Thimo_0246 PF02910 Fumarate reductase flavoprotein C-term Thimo_0246 PF00890 FAD binding domain Thimo_0250 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thimo_0250 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thimo_0250 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thimo_0251 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thimo_0253 PF01593 Flavin containing amine oxidoreductase Thimo_0257 PF00970 Oxidoreductase FAD-binding domain Thimo_0257 PF00111 2Fe-2S iron-sulfur cluster binding domain Thimo_0257 PF00175 Oxidoreductase NAD-binding domain Thimo_0261 PF02561 Flagellar protein FliS Thimo_0263 PF00700 Bacterial flagellin C-terminal helical region Thimo_0263 PF00669 Bacterial flagellin N-terminal helical region Thimo_0264 PF03646 FlaG protein Thimo_0265 PF07195 Flagellar hook-associated protein 2 C-terminus Thimo_0265 PF02465 Flagellar hook-associated protein 2 N-terminus Thimo_0265 PF07196 Flagellin hook IN motif Thimo_0267 PF00158 Sigma-54 interaction domain Thimo_0267 PF02954 Bacterial regulatory protein, Fis family Thimo_0267 PF00072 Response regulator receiver domain Thimo_0268 PF00158 Sigma-54 interaction domain Thimo_0268 PF02954 Bacterial regulatory protein, Fis family Thimo_0269 PF02049 Flagellar hook-basal body complex protein FliE Thimo_0270 PF08345 Flagellar M-ring protein C-terminal Thimo_0270 PF01514 Secretory protein of YscJ/FliF family Thimo_0271 PF14842 FliG N-terminal domain Thimo_0271 PF14841 FliG middle domain Thimo_0271 PF01706 FliG C-terminal domain Thimo_0273 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_0273 PF18269 T3SS EscN ATPase C-terminal domain Thimo_0277 PF02154 Flagellar motor switch protein FliM Thimo_0277 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thimo_0278 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thimo_0279 PF04347 Flagellar biosynthesis protein, FliO Thimo_0280 PF00813 FliP family Thimo_0281 PF01313 Bacterial export proteins, family 3 Thimo_0282 PF01311 Bacterial export proteins, family 1 Thimo_0283 PF01312 FlhB HrpN YscU SpaS Family Thimo_0284 PF00771 FHIPEP family Thimo_0285 PF00448 SRP54-type protein, GTPase domain Thimo_0286 PF10609 NUBPL iron-transfer P-loop NTPase Thimo_0287 PF04545 Sigma-70, region 4 Thimo_0287 PF04539 Sigma-70 region 3 Thimo_0287 PF04542 Sigma-70 region 2 Thimo_0293 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thimo_0293 PF00691 OmpA family Thimo_0294 PF01618 MotA/TolQ/ExbB proton channel family Thimo_0296 PF01272 Transcription elongation factor, GreA/GreB, C-term Thimo_0296 PF03449 Transcription elongation factor, N-terminal Thimo_0297 PF02142 MGS-like domain Thimo_0297 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thimo_0297 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thimo_0298 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thimo_0298 PF00117 Glutamine amidotransferase class-I Thimo_0301 PF02687 FtsX-like permease family Thimo_0301 PF00005 ABC transporter Thimo_0301 PF12704 MacB-like periplasmic core domain Thimo_0304 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thimo_0304 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thimo_0325 PF09827 CRISPR associated protein Cas2 Thimo_0326 PF01867 CRISPR associated protein Cas1 Thimo_0328 PF01797 Transposase IS200 like Thimo_0329 PF09190 DALR domain Thimo_0329 PF01406 tRNA synthetases class I (C) catalytic domain Thimo_0330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Thimo_0331 PF00149 Calcineurin-like phosphoesterase Thimo_0332 PF00795 Carbon-nitrogen hydrolase Thimo_0332 PF00535 Glycosyl transferase family 2 Thimo_0334 PF00270 DEAD/DEAH box helicase Thimo_0334 PF00271 Helicase conserved C-terminal domain Thimo_0339 PF16921 Tex protein YqgF-like domain Thimo_0339 PF09371 Tex-like protein N-terminal domain Thimo_0339 PF00575 S1 RNA binding domain Thimo_0339 PF17674 HHH domain Thimo_0342 PF00464 Serine hydroxymethyltransferase Thimo_0343 PF03477 ATP cone domain Thimo_0344 PF01872 RibD C-terminal domain Thimo_0344 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thimo_0347 PF00149 Calcineurin-like phosphoesterase Thimo_0352 PF04055 Radical SAM superfamily Thimo_0352 PF06463 Molybdenum Cofactor Synthesis C Thimo_0353 PF03109 ABC1 family Thimo_0355 PF01654 Cytochrome bd terminal oxidase subunit I Thimo_0356 PF02322 Cytochrome bd terminal oxidase subunit II Thimo_0358 PF00664 ABC transporter transmembrane region Thimo_0358 PF00005 ABC transporter Thimo_0359 PF00005 ABC transporter Thimo_0359 PF00664 ABC transporter transmembrane region Thimo_0364 PF00561 alpha/beta hydrolase fold Thimo_0365 PF12697 Alpha/beta hydrolase family Thimo_0372 PF18030 RimK PreATP-grasp domain Thimo_0372 PF08443 RimK-like ATP-grasp domain Thimo_0374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0374 PF05231 MASE1 Thimo_0374 PF07730 Histidine kinase Thimo_0376 PF07883 Cupin domain Thimo_0377 PF00158 Sigma-54 interaction domain Thimo_0377 PF01590 GAF domain Thimo_0380 PF01641 SelR domain Thimo_0382 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thimo_0382 PF00205 Thiamine pyrophosphate enzyme, central domain Thimo_0382 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thimo_0383 PF10369 Small subunit of acetolactate synthase Thimo_0384 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thimo_0384 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thimo_0385 PF03734 L,D-transpeptidase catalytic domain Thimo_0389 PF01116 Fructose-bisphosphate aldolase class-II Thimo_0390 PF13419 Haloacid dehalogenase-like hydrolase Thimo_0394 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Thimo_0402 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thimo_0404 PF03466 LysR substrate binding domain Thimo_0404 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_0406 PF07704 Rv0623-like transcription factor Thimo_0407 PF01850 PIN domain Thimo_0411 PF03279 Bacterial lipid A biosynthesis acyltransferase Thimo_0412 PF04357 TamB, inner membrane protein subunit of TAM complex Thimo_0413 PF01103 Surface antigen Thimo_0413 PF07244 Surface antigen variable number repeat Thimo_0414 PF00403 Heavy-metal-associated domain Thimo_0415 PF02685 Glucokinase Thimo_0417 PF04358 DsrC like protein Thimo_0418 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Thimo_0419 PF12804 MobA-like NTP transferase domain Thimo_0422 PF07669 Eco57I restriction-modification methylase Thimo_0423 PF02082 Transcriptional regulator Thimo_0424 PF05175 Methyltransferase small domain Thimo_0426 PF06969 HemN C-terminal domain Thimo_0426 PF04055 Radical SAM superfamily Thimo_0427 PF00501 AMP-binding enzyme Thimo_0427 PF13193 AMP-binding enzyme C-terminal domain Thimo_0429 PF05698 Bacterial trigger factor protein (TF) C-terminus Thimo_0429 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thimo_0429 PF05697 Bacterial trigger factor protein (TF) Thimo_0430 PF00574 Clp protease Thimo_0431 PF07724 AAA domain (Cdc48 subfamily) Thimo_0431 PF10431 C-terminal, D2-small domain, of ClpB protein Thimo_0431 PF06689 ClpX C4-type zinc finger Thimo_0432 PF05362 Lon protease (S16) C-terminal proteolytic domain Thimo_0432 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_0432 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thimo_0433 PF00216 Bacterial DNA-binding protein Thimo_0436 PF09312 SurA N-terminal domain Thimo_0438 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Thimo_0438 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Thimo_0438 PF02770 Acyl-CoA dehydrogenase, middle domain Thimo_0439 PF01012 Electron transfer flavoprotein domain Thimo_0439 PF00766 Electron transfer flavoprotein FAD-binding domain Thimo_0440 PF01012 Electron transfer flavoprotein domain Thimo_0442 PF06167 Glucose-regulated metallo-peptidase M90 Thimo_0443 PF02630 SCO1/SenC Thimo_0444 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thimo_0447 PF06532 Negative regulator of sigma F Thimo_0448 PF04542 Sigma-70 region 2 Thimo_0448 PF08281 Sigma-70, region 4 Thimo_0450 PF01625 Peptide methionine sulfoxide reductase Thimo_0452 PF00521 DNA gyrase/topoisomerase IV, subunit A Thimo_0452 PF03989 DNA gyrase C-terminal domain, beta-propeller Thimo_0453 PF01894 Uncharacterised protein family UPF0047 Thimo_0455 PF17768 RecJ OB domain Thimo_0455 PF02272 DHHA1 domain Thimo_0455 PF01368 DHH family Thimo_0459 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thimo_0459 PF01348 Type II intron maturase Thimo_0460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thimo_0462 PF05685 Putative restriction endonuclease Thimo_0463 PF04751 Protein of unknown function (DUF615) Thimo_0465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Thimo_0466 PF00890 FAD binding domain Thimo_0466 PF02910 Fumarate reductase flavoprotein C-term Thimo_0467 PF13085 2Fe-2S iron-sulfur cluster binding domain Thimo_0468 PF03937 Flavinator of succinate dehydrogenase Thimo_0469 PF13411 MerR HTH family regulatory protein Thimo_0469 PF07739 TipAS antibiotic-recognition domain Thimo_0472 PF04205 FMN-binding domain Thimo_0472 PF00890 FAD binding domain Thimo_0473 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thimo_0479 PF01596 O-methyltransferase Thimo_0481 PF00248 Aldo/keto reductase family Thimo_0484 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thimo_0488 PF13533 Biotin-lipoyl like Thimo_0490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Thimo_0492 PF02535 ZIP Zinc transporter Thimo_0493 PF02310 B12 binding domain Thimo_0493 PF04055 Radical SAM superfamily Thimo_0495 PF00809 Pterin binding enzyme Thimo_0495 PF02574 Homocysteine S-methyltransferase Thimo_0495 PF02965 Vitamin B12 dependent methionine synthase, activation domain Thimo_0495 PF02607 B12 binding domain Thimo_0495 PF02310 B12 binding domain Thimo_0499 PF05685 Putative restriction endonuclease Thimo_0500 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thimo_0500 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0501 PF17113 Regulatory signalling modulator protein AmpE Thimo_0501 PF03186 CobD/Cbib protein Thimo_0502 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Thimo_0503 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_0510 PF00072 Response regulator receiver domain Thimo_0511 PF01636 Phosphotransferase enzyme family Thimo_0513 PF02978 Signal peptide binding domain Thimo_0513 PF00448 SRP54-type protein, GTPase domain Thimo_0513 PF02881 SRP54-type protein, helical bundle domain Thimo_0515 PF00563 EAL domain Thimo_0515 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0515 PF01590 GAF domain Thimo_0515 PF00989 PAS fold Thimo_0517 PF01467 Cytidylyltransferase-like Thimo_0517 PF00294 pfkB family carbohydrate kinase Thimo_0518 PF13580 SIS domain Thimo_0527 PF13186 Iron-sulfur cluster-binding domain Thimo_0527 PF04055 Radical SAM superfamily Thimo_0530 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thimo_0531 PF00575 S1 RNA binding domain Thimo_0531 PF10150 Ribonuclease E/G family Thimo_0531 PF12111 Polyribonucleotide phosphorylase C terminal Thimo_0532 PF00849 RNA pseudouridylate synthase Thimo_0532 PF01479 S4 domain Thimo_0533 PF13419 Haloacid dehalogenase-like hydrolase Thimo_0534 PF01343 Peptidase family S49 Thimo_0535 PF01464 Transglycosylase SLT domain Thimo_0535 PF01476 LysM domain Thimo_0536 PF02545 Maf-like protein Thimo_0539 PF00873 AcrB/AcrD/AcrF family Thimo_0540 PF01627 Hpt domain Thimo_0540 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0540 PF00072 Response regulator receiver domain Thimo_0540 PF00672 HAMP domain Thimo_0540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thimo_0542 PF14403 Circularly permuted ATP-grasp type 2 Thimo_0544 PF01258 Prokaryotic dksA/traR C4-type zinc finger Thimo_0545 PF04358 DsrC like protein Thimo_0552 PF03979 Sigma-70 factor, region 1.1 Thimo_0552 PF04546 Sigma-70, non-essential region Thimo_0552 PF04542 Sigma-70 region 2 Thimo_0552 PF04539 Sigma-70 region 3 Thimo_0552 PF04545 Sigma-70, region 4 Thimo_0552 PF00140 Sigma-70 factor, region 1.2 Thimo_0553 PF10410 DnaB-helicase binding domain of primase Thimo_0553 PF08278 DNA primase DnaG DnaB-binding Thimo_0553 PF08275 DNA primase catalytic core, N-terminal domain Thimo_0553 PF01807 CHC2 zinc finger Thimo_0555 PF01165 Ribosomal protein S21 Thimo_0557 PF00814 Glycoprotease family Thimo_0558 PF02660 Glycerol-3-phosphate acyltransferase Thimo_0559 PF02152 Dihydroneopterin aldolase Thimo_0560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thimo_0562 PF00106 short chain dehydrogenase Thimo_0566 PF01925 Sulfite exporter TauE/SafE Thimo_0569 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_0570 PF03061 Thioesterase superfamily Thimo_0571 PF01618 MotA/TolQ/ExbB proton channel family Thimo_0572 PF02472 Biopolymer transport protein ExbD/TolR Thimo_0574 PF07676 WD40-like Beta Propeller Repeat Thimo_0574 PF04052 TolB amino-terminal domain Thimo_0575 PF00691 OmpA family Thimo_0577 PF04055 Radical SAM superfamily Thimo_0581 PF01668 SmpB protein Thimo_0582 PF00121 Triosephosphate isomerase Thimo_0583 PF03840 Preprotein translocase SecG subunit Thimo_0585 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Thimo_0586 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_0587 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thimo_0588 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thimo_0590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thimo_0590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thimo_0590 PF10531 SLBB domain Thimo_0591 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thimo_0591 PF00384 Molybdopterin oxidoreductase Thimo_0591 PF00384 Molybdopterin oxidoreductase Thimo_0591 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thimo_0591 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Thimo_0591 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Thimo_0592 PF00146 NADH dehydrogenase Thimo_0593 PF12838 4Fe-4S dicluster domain Thimo_0594 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Thimo_0595 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thimo_0596 PF00361 Proton-conducting membrane transporter Thimo_0596 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thimo_0597 PF00361 Proton-conducting membrane transporter Thimo_0597 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Thimo_0598 PF00361 Proton-conducting membrane transporter Thimo_0602 PF03969 AFG1-like ATPase Thimo_0604 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Thimo_0604 PF12833 Helix-turn-helix domain Thimo_0605 PF00942 Cellulose binding domain Thimo_0605 PF03442 Carbohydrate binding domain X2 Thimo_0610 PF00069 Protein kinase domain Thimo_0612 PF13742 OB-fold nucleic acid binding domain Thimo_0612 PF02601 Exonuclease VII, large subunit Thimo_0613 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_0613 PF03459 TOBE domain Thimo_0615 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_0616 PF03459 TOBE domain Thimo_0616 PF00005 ABC transporter Thimo_0617 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thimo_0617 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thimo_0618 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thimo_0618 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thimo_0623 PF00563 EAL domain Thimo_0623 PF01590 GAF domain Thimo_0623 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0623 PF00360 Phytochrome region Thimo_0624 PF00672 HAMP domain Thimo_0624 PF01627 Hpt domain Thimo_0624 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0624 PF00072 Response regulator receiver domain Thimo_0624 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thimo_0624 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0625 PF08448 PAS fold Thimo_0625 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0631 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Thimo_0635 PF12704 MacB-like periplasmic core domain Thimo_0635 PF02687 FtsX-like permease family Thimo_0636 PF12704 MacB-like periplasmic core domain Thimo_0636 PF00005 ABC transporter Thimo_0636 PF02687 FtsX-like permease family Thimo_0637 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_0648 PF00437 Type II/IV secretion system protein Thimo_0649 PF00437 Type II/IV secretion system protein Thimo_0650 PF00482 Type II secretion system (T2SS), protein F Thimo_0652 PF00263 Bacterial type II and III secretion system protein Thimo_0652 PF03958 Bacterial type II/III secretion system short domain Thimo_0654 PF01464 Transglycosylase SLT domain Thimo_0655 PF04205 FMN-binding domain Thimo_0657 PF03239 Iron permease FTR1 family Thimo_0658 PF11992 Domain of unknown function (DUF3488) Thimo_0658 PF13559 Domain of unknown function (DUF4129) Thimo_0658 PF01841 Transglutaminase-like superfamily Thimo_0660 PF07726 ATPase family associated with various cellular activities (AAA) Thimo_0660 PF17863 AAA lid domain Thimo_0665 PF00072 Response regulator receiver domain Thimo_0665 PF01627 Hpt domain Thimo_0665 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0665 PF00672 HAMP domain Thimo_0665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thimo_0665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0666 PF00485 Phosphoribulokinase / Uridine kinase family Thimo_0667 PF03471 Transporter associated domain Thimo_0667 PF00571 CBS domain Thimo_0668 PF02130 Uncharacterized protein family UPF0054 Thimo_0669 PF02562 PhoH-like protein Thimo_0670 PF04055 Radical SAM superfamily Thimo_0670 PF01938 TRAM domain Thimo_0670 PF00919 Uncharacterized protein family UPF0004 Thimo_0673 PF00117 Glutamine amidotransferase class-I Thimo_0674 PF01751 Toprim domain Thimo_0674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0674 PF18053 DNA gyrase B subunit insert domain Thimo_0674 PF00986 DNA gyrase B subunit, carboxyl terminus Thimo_0674 PF00204 DNA gyrase B Thimo_0675 PF05872 Bacterial protein of unknown function (DUF853) Thimo_0677 PF00270 DEAD/DEAH box helicase Thimo_0677 PF09369 Domain of unknown function (DUF1998) Thimo_0677 PF00271 Helicase conserved C-terminal domain Thimo_0680 PF16078 2-oxoglutarate dehydrogenase N-terminus Thimo_0680 PF00676 Dehydrogenase E1 component Thimo_0680 PF16870 2-oxoglutarate dehydrogenase C-terminal Thimo_0680 PF02779 Transketolase, pyrimidine binding domain Thimo_0681 PF02817 e3 binding domain Thimo_0681 PF00364 Biotin-requiring enzyme Thimo_0681 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thimo_0685 PF02541 Ppx/GppA phosphatase family Thimo_0687 PF02342 TerD domain Thimo_0689 PF00437 Type II/IV secretion system protein Thimo_0690 PF00437 Type II/IV secretion system protein Thimo_0691 PF00731 AIR carboxylase Thimo_0692 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Thimo_0692 PF02222 ATP-grasp domain Thimo_0693 PF07963 Prokaryotic N-terminal methylation motif Thimo_0693 PF00114 Pilin (bacterial filament) Thimo_0696 PF00690 Cation transporter/ATPase, N-terminus Thimo_0696 PF00689 Cation transporting ATPase, C-terminus Thimo_0697 PF04168 A predicted alpha-helical domain with a conserved ER motif. Thimo_0697 PF14403 Circularly permuted ATP-grasp type 2 Thimo_0698 PF14403 Circularly permuted ATP-grasp type 2 Thimo_0700 PF10263 SprT-like family Thimo_0700 PF17283 SprT-like zinc ribbon domain Thimo_0701 PF02576 RimP N-terminal domain Thimo_0701 PF17384 RimP C-terminal SH3 domain Thimo_0702 PF00575 S1 RNA binding domain Thimo_0702 PF08529 NusA N-terminal domain Thimo_0702 PF13184 NusA-like KH domain Thimo_0703 PF04760 Translation initiation factor IF-2, N-terminal region Thimo_0703 PF11987 Translation-initiation factor 2 Thimo_0703 PF08364 Bacterial translation initiation factor IF-2 associated region Thimo_0703 PF00009 Elongation factor Tu GTP binding domain Thimo_0703 PF03144 Elongation factor Tu domain 2 Thimo_0704 PF02033 Ribosome-binding factor A Thimo_0705 PF09157 Pseudouridine synthase II TruB, C-terminal Thimo_0705 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thimo_0705 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thimo_0706 PF00312 Ribosomal protein S15 Thimo_0707 PF00013 KH domain Thimo_0707 PF01138 3' exoribonuclease family, domain 1 Thimo_0707 PF00575 S1 RNA binding domain Thimo_0707 PF03725 3' exoribonuclease family, domain 2 Thimo_0707 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thimo_0708 PF12794 Mechanosensitive ion channel inner membrane domain 1 Thimo_0708 PF12795 Mechanosensitive ion channel porin domain Thimo_0708 PF00924 Mechanosensitive ion channel Thimo_0709 PF01037 Lrp/AsnC ligand binding domain Thimo_0710 PF08502 LeuA allosteric (dimerisation) domain Thimo_0710 PF00682 HMGL-like Thimo_0711 PF00471 Ribosomal protein L33 Thimo_0712 PF00830 Ribosomal L28 family Thimo_0713 PF01170 Putative RNA methylase family UPF0020 Thimo_0713 PF10672 S-adenosylmethionine-dependent methyltransferase Thimo_0713 PF02926 THUMP domain Thimo_0714 PF00484 Carbonic anhydrase Thimo_0717 PF08335 GlnD PII-uridylyltransferase Thimo_0717 PF01909 Nucleotidyltransferase domain Thimo_0717 PF01966 HD domain Thimo_0717 PF01842 ACT domain Thimo_0718 PF00557 Metallopeptidase family M24 Thimo_0719 PF00318 Ribosomal protein S2 Thimo_0720 PF00889 Elongation factor TS Thimo_0721 PF00696 Amino acid kinase family Thimo_0722 PF01765 Ribosome recycling factor Thimo_0723 PF01255 Putative undecaprenyl diphosphate synthase Thimo_0725 PF13288 DXP reductoisomerase C-terminal domain Thimo_0725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thimo_0725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thimo_0726 PF13180 PDZ domain Thimo_0726 PF17820 PDZ domain Thimo_0726 PF02163 Peptidase family M50 Thimo_0727 PF01103 Surface antigen Thimo_0727 PF07244 Surface antigen variable number repeat Thimo_0729 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_0729 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Thimo_0730 PF07977 FabA-like domain Thimo_0731 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Thimo_0731 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_0732 PF02684 Lipid-A-disaccharide synthetase Thimo_0733 PF01351 Ribonuclease HII Thimo_0734 PF04551 GcpE protein Thimo_0736 PF01894 Uncharacterised protein family UPF0047 Thimo_0737 PF03819 MazG nucleotide pyrophosphohydrolase domain Thimo_0738 PF04002 RadC-like JAB domain Thimo_0739 PF04127 DNA / pantothenate metabolism flavoprotein Thimo_0739 PF02441 Flavoprotein Thimo_0740 PF00692 dUTPase Thimo_0741 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thimo_0741 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thimo_0741 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thimo_0741 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thimo_0742 PF00696 Amino acid kinase family Thimo_0744 PF00156 Phosphoribosyl transferase domain Thimo_0747 PF02594 Uncharacterised ACR, YggU family COG1872 Thimo_0748 PF02325 YGGT family Thimo_0749 PF03807 NADP oxidoreductase coenzyme F420-dependent Thimo_0749 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thimo_0750 PF01168 Alanine racemase, N-terminal domain Thimo_0751 PF01725 Ham1 family Thimo_0752 PF01138 3' exoribonuclease family, domain 1 Thimo_0752 PF03725 3' exoribonuclease family, domain 2 Thimo_0753 PF00069 Protein kinase domain Thimo_0754 PF03755 YicC-like family, N-terminal region Thimo_0754 PF08340 Domain of unknown function (DUF1732) Thimo_0755 PF00625 Guanylate kinase Thimo_0756 PF01192 RNA polymerase Rpb6 Thimo_0757 PF02824 TGS domain Thimo_0757 PF13291 ACT domain Thimo_0757 PF04607 Region found in RelA / SpoT proteins Thimo_0759 PF01042 Endoribonuclease L-PSP Thimo_0760 PF01259 SAICAR synthetase Thimo_0761 PF03707 Bacterial signalling protein N terminal repeat Thimo_0761 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0761 PF00563 EAL domain Thimo_0762 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thimo_0762 PF00753 Metallo-beta-lactamase superfamily Thimo_0763 PF02780 Transketolase, C-terminal domain Thimo_0763 PF02779 Transketolase, pyrimidine binding domain Thimo_0763 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thimo_0764 PF03466 LysR substrate binding domain Thimo_0764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_0765 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thimo_0765 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Thimo_0766 PF00101 Ribulose bisphosphate carboxylase, small chain Thimo_0767 PF00072 Response regulator receiver domain Thimo_0767 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0768 PF02779 Transketolase, pyrimidine binding domain Thimo_0768 PF02780 Transketolase, C-terminal domain Thimo_0774 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thimo_0774 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_0777 PF00374 Nickel-dependent hydrogenase Thimo_0784 PF16450 Proteasomal ATPase OB C-terminal domain Thimo_0784 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_0784 PF17758 Proteasomal ATPase OB N-terminal domain Thimo_0822 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0822 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0823 PF00158 Sigma-54 interaction domain Thimo_0823 PF00072 Response regulator receiver domain Thimo_0823 PF02954 Bacterial regulatory protein, Fis family Thimo_0828 PF04172 LrgB-like family Thimo_0834 PF09308 LuxQ, periplasmic Thimo_0834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_0834 PF00072 Response regulator receiver domain Thimo_0834 PF00512 His Kinase A (phospho-acceptor) domain Thimo_0836 PF01218 Coproporphyrinogen III oxidase Thimo_0840 PF02001 Protein of unknown function DUF134 Thimo_0841 PF01883 Iron-sulfur cluster assembly protein Thimo_0841 PF10609 NUBPL iron-transfer P-loop NTPase Thimo_0844 PF05191 Adenylate kinase, active site lid Thimo_0845 PF00085 Thioredoxin Thimo_0849 PF00529 HlyD membrane-fusion protein of T1SS Thimo_0849 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_0850 PF00873 AcrB/AcrD/AcrF family Thimo_0851 PF05724 Thiopurine S-methyltransferase (TPMT) Thimo_0853 PF03707 Bacterial signalling protein N terminal repeat Thimo_0853 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0853 PF00563 EAL domain Thimo_0854 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0854 PF00563 EAL domain Thimo_0854 PF03707 Bacterial signalling protein N terminal repeat Thimo_0856 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Thimo_0857 PF08019 Phosphoethanolamine transferase EptA/EptB Thimo_0857 PF00884 Sulfatase Thimo_0873 PF01740 STAS domain Thimo_0873 PF13426 PAS domain Thimo_0876 PF01680 SOR/SNZ family Thimo_0877 PF01174 SNO glutamine amidotransferase family Thimo_0879 PF12697 Alpha/beta hydrolase family Thimo_0880 PF12631 MnmE helical domain Thimo_0880 PF01926 50S ribosome-binding GTPase Thimo_0880 PF10396 GTP-binding protein TrmE N-terminus Thimo_0883 PF00501 AMP-binding enzyme Thimo_0883 PF13193 AMP-binding enzyme C-terminal domain Thimo_0884 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thimo_0884 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Thimo_0885 PF01894 Uncharacterised protein family UPF0047 Thimo_0887 PF00293 NUDIX domain Thimo_0894 PF06122 Conjugative relaxosome accessory transposon protein Thimo_0901 PF00158 Sigma-54 interaction domain Thimo_0901 PF02954 Bacterial regulatory protein, Fis family Thimo_0901 PF13185 GAF domain Thimo_0915 PF02463 RecF/RecN/SMC N terminal domain Thimo_0915 PF06470 SMC proteins Flexible Hinge Domain Thimo_0916 PF04354 ZipA, C-terminal FtsZ-binding domain Thimo_0917 PF12826 Helix-hairpin-helix motif Thimo_0917 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thimo_0917 PF03120 NAD-dependent DNA ligase OB-fold domain Thimo_0917 PF01653 NAD-dependent DNA ligase adenylation domain Thimo_0917 PF00533 BRCA1 C Terminus (BRCT) domain Thimo_0919 PF00194 Eukaryotic-type carbonic anhydrase Thimo_0920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thimo_0920 PF00128 Alpha amylase, catalytic domain Thimo_0921 PF01040 UbiA prenyltransferase family Thimo_0923 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_0927 PF03466 LysR substrate binding domain Thimo_0927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_0928 PF00005 ABC transporter Thimo_0931 PF01891 Cobalt uptake substrate-specific transmembrane region Thimo_0934 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Thimo_0935 PF01171 PP-loop family Thimo_0935 PF09179 TilS substrate binding domain Thimo_0935 PF11734 TilS substrate C-terminal domain Thimo_0942 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_0943 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_0944 PF00005 ABC transporter Thimo_0944 PF08402 TOBE domain Thimo_0945 PF13416 Bacterial extracellular solute-binding protein Thimo_0946 PF01773 Na+ dependent nucleoside transporter N-terminus Thimo_0946 PF07670 Nucleoside recognition Thimo_0946 PF07662 Na+ dependent nucleoside transporter C-terminus Thimo_0947 PF01430 Hsp33 protein Thimo_0948 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE Thimo_0951 PF13247 4Fe-4S dicluster domain Thimo_0953 PF03707 Bacterial signalling protein N terminal repeat Thimo_0953 PF00563 EAL domain Thimo_0953 PF00990 Diguanylate cyclase, GGDEF domain Thimo_0954 PF07689 KaiB domain Thimo_0955 PF06745 KaiC Thimo_0956 PF00378 Enoyl-CoA hydratase/isomerase Thimo_0958 PF10609 NUBPL iron-transfer P-loop NTPase Thimo_0959 PF01588 Putative tRNA binding domain Thimo_0959 PF09334 tRNA synthetases class I (M) Thimo_0960 PF02508 Rnf-Nqr subunit, membrane protein Thimo_0961 PF04060 Putative Fe-S cluster Thimo_0962 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thimo_0962 PF12838 4Fe-4S dicluster domain Thimo_0962 PF13375 RnfC Barrel sandwich hybrid domain Thimo_0962 PF10531 SLBB domain Thimo_0963 PF03116 NQR2, RnfD, RnfE family Thimo_0964 PF04205 FMN-binding domain Thimo_0965 PF02508 Rnf-Nqr subunit, membrane protein Thimo_0968 PF03795 YCII-related domain Thimo_0969 PF04279 Intracellular septation protein A Thimo_0970 PF02811 PHP domain Thimo_0971 PF01300 Telomere recombination Thimo_0972 PF02163 Peptidase family M50 Thimo_0973 PF00579 tRNA synthetases class I (W and Y) Thimo_0974 PF02616 Segregation and condensation protein ScpA Thimo_0975 PF04079 Segregation and condensation complex subunit ScpB Thimo_0976 PF00483 Nucleotidyl transferase Thimo_0976 PF01050 Mannose-6-phosphate isomerase Thimo_0977 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thimo_0977 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thimo_0977 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thimo_0977 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thimo_0992 PF13537 Glutamine amidotransferase domain Thimo_0992 PF00733 Asparagine synthase Thimo_1004 PF00534 Glycosyl transferases group 1 Thimo_1004 PF13439 Glycosyltransferase Family 4 Thimo_1005 PF13181 Tetratricopeptide repeat Thimo_1006 PF00535 Glycosyl transferase family 2 Thimo_1012 PF13276 HTH-like domain Thimo_1012 PF00665 Integrase core domain Thimo_1012 PF13333 Integrase core domain Thimo_1013 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thimo_1013 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thimo_1019 PF02350 UDP-N-acetylglucosamine 2-epimerase Thimo_1028 PF01527 Transposase Thimo_1029 PF00665 Integrase core domain Thimo_1029 PF13333 Integrase core domain Thimo_1029 PF13276 HTH-like domain Thimo_1032 PF01521 Iron-sulphur cluster biosynthesis Thimo_1034 PF01479 S4 domain Thimo_1034 PF00579 tRNA synthetases class I (W and Y) Thimo_1041 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_1041 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_1042 PF00462 Glutaredoxin Thimo_1042 PF08534 Redoxin Thimo_1043 PF13406 Transglycosylase SLT domain Thimo_1044 PF00271 Helicase conserved C-terminal domain Thimo_1044 PF00270 DEAD/DEAH box helicase Thimo_1044 PF17191 RecG wedge domain Thimo_1045 PF01040 UbiA prenyltransferase family Thimo_1047 PF01121 Dephospho-CoA kinase Thimo_1048 PF06750 Bacterial Peptidase A24 N-terminal domain Thimo_1048 PF01478 Type IV leader peptidase family Thimo_1049 PF00482 Type II secretion system (T2SS), protein F Thimo_1050 PF00437 Type II/IV secretion system protein Thimo_1050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Thimo_1052 PF13193 AMP-binding enzyme C-terminal domain Thimo_1052 PF00501 AMP-binding enzyme Thimo_1052 PF16177 Acetyl-coenzyme A synthetase N-terminus Thimo_1053 PF03190 Protein of unknown function, DUF255 Thimo_1054 PF01274 Malate synthase Thimo_1057 PF02547 Queuosine biosynthesis protein Thimo_1058 PF01625 Peptide methionine sulfoxide reductase Thimo_1060 PF01702 Queuine tRNA-ribosyltransferase Thimo_1061 PF02699 Preprotein translocase subunit Thimo_1062 PF02355 Protein export membrane protein Thimo_1062 PF13721 SecD export protein N-terminal TM region Thimo_1062 PF07549 SecD/SecF GG Motif Thimo_1063 PF02355 Protein export membrane protein Thimo_1063 PF07549 SecD/SecF GG Motif Thimo_1064 PF00459 Inositol monophosphatase family Thimo_1065 PF00588 SpoU rRNA Methylase family Thimo_1066 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_1068 PF04452 RNA methyltransferase Thimo_1069 PF04241 Protein of unknown function (DUF423) Thimo_1071 PF00206 Lyase Thimo_1071 PF14698 Argininosuccinate lyase C-terminal Thimo_1075 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Thimo_1076 PF00595 PDZ domain Thimo_1076 PF13180 PDZ domain Thimo_1077 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thimo_1078 PF00186 Dihydrofolate reductase Thimo_1080 PF01467 Cytidylyltransferase-like Thimo_1081 PF00171 Aldehyde dehydrogenase family Thimo_1083 PF04390 Lipopolysaccharide-assembly Thimo_1084 PF08264 Anticodon-binding domain of tRNA Thimo_1084 PF13603 Leucyl-tRNA synthetase, Domain 2 Thimo_1084 PF00133 tRNA synthetases class I (I, L, M and V) Thimo_1085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_1085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_1086 PF02817 e3 binding domain Thimo_1086 PF00364 Biotin-requiring enzyme Thimo_1086 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thimo_1087 PF17831 Pyruvate dehydrogenase E1 component middle domain Thimo_1087 PF00456 Transketolase, thiamine diphosphate binding domain Thimo_1095 PF04430 Protein of unknown function (DUF498/DUF598) Thimo_1096 PF00155 Aminotransferase class I and II Thimo_1097 PF03447 Homoserine dehydrogenase, NAD binding domain Thimo_1097 PF01842 ACT domain Thimo_1097 PF00742 Homoserine dehydrogenase Thimo_1099 PF00561 alpha/beta hydrolase fold Thimo_1100 PF02321 Outer membrane efflux protein Thimo_1101 PF01264 Chorismate synthase Thimo_1102 PF12832 MFS_1 like family Thimo_1103 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thimo_1103 PF00128 Alpha amylase, catalytic domain Thimo_1106 PF00005 ABC transporter Thimo_1107 PF02405 Permease MlaE Thimo_1108 PF03330 Lytic transglycolase Thimo_1108 PF05036 Sporulation related domain Thimo_1110 PF00245 Alkaline phosphatase Thimo_1111 PF00561 alpha/beta hydrolase fold Thimo_1114 PF00092 von Willebrand factor type A domain Thimo_1114 PF07584 Aerotolerance regulator N-terminal Thimo_1115 PF00092 von Willebrand factor type A domain Thimo_1117 PF01882 Protein of unknown function DUF58 Thimo_1118 PF07726 ATPase family associated with various cellular activities (AAA) Thimo_1118 PF17863 AAA lid domain Thimo_1125 PF00355 Rieske [2Fe-2S] domain Thimo_1128 PF04055 Radical SAM superfamily Thimo_1128 PF16199 Radical_SAM C-terminal domain Thimo_1129 PF12697 Alpha/beta hydrolase family Thimo_1131 PF05166 YcgL domain Thimo_1131 PF05116 Sucrose-6F-phosphate phosphohydrolase Thimo_1132 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Thimo_1135 PF03466 LysR substrate binding domain Thimo_1135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_1137 PF08443 RimK-like ATP-grasp domain Thimo_1137 PF18030 RimK PreATP-grasp domain Thimo_1138 PF01252 Signal peptidase (SPase) II Thimo_1139 PF00133 tRNA synthetases class I (I, L, M and V) Thimo_1139 PF06827 Zinc finger found in FPG and IleRS Thimo_1139 PF08264 Anticodon-binding domain of tRNA Thimo_1140 PF06574 FAD synthetase Thimo_1140 PF01687 Riboflavin kinase Thimo_1141 PF03023 Lipid II flippase MurJ Thimo_1142 PF00534 Glycosyl transferases group 1 Thimo_1142 PF13439 Glycosyltransferase Family 4 Thimo_1143 PF00563 EAL domain Thimo_1143 PF00990 Diguanylate cyclase, GGDEF domain Thimo_1143 PF08448 PAS fold Thimo_1150 PF02080 TrkA-C domain Thimo_1150 PF03600 Citrate transporter Thimo_1151 PF13472 GDSL-like Lipase/Acylhydrolase family Thimo_1152 PF12849 PBP superfamily domain Thimo_1153 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_1154 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_1155 PF00005 ABC transporter Thimo_1156 PF12849 PBP superfamily domain Thimo_1158 PF01544 CorA-like Mg2+ transporter protein Thimo_1159 PF17863 AAA lid domain Thimo_1159 PF07726 ATPase family associated with various cellular activities (AAA) Thimo_1160 PF13932 GidA associated domain Thimo_1160 PF01134 Glucose inhibited division protein A Thimo_1161 PF02527 rRNA small subunit methyltransferase G Thimo_1162 PF13614 AAA domain Thimo_1163 PF02195 ParB-like nuclease domain Thimo_1163 PF17762 HTH domain found in ParB protein Thimo_1165 PF00119 ATP synthase A chain Thimo_1166 PF00137 ATP synthase subunit C Thimo_1167 PF00430 ATP synthase B/B' CF(0) Thimo_1168 PF00213 ATP synthase delta (OSCP) subunit Thimo_1169 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_1169 PF00306 ATP synthase alpha/beta chain, C terminal domain Thimo_1169 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thimo_1170 PF00231 ATP synthase Thimo_1171 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thimo_1171 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_1172 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Thimo_1172 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Thimo_1173 PF12804 MobA-like NTP transferase domain Thimo_1173 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_1174 PF01380 SIS domain Thimo_1175 PF00117 Glutamine amidotransferase class-I Thimo_1176 PF02885 Glycosyl transferase family, helical bundle domain Thimo_1176 PF00591 Glycosyl transferase family, a/b domain Thimo_1177 PF00218 Indole-3-glycerol phosphate synthase Thimo_1178 PF13545 Crp-like helix-turn-helix domain Thimo_1178 PF00027 Cyclic nucleotide-binding domain Thimo_1180 PF02675 S-adenosylmethionine decarboxylase Thimo_1181 PF03232 Ubiquinone biosynthesis protein COQ7 Thimo_1182 PF02754 Cysteine-rich domain Thimo_1182 PF13183 4Fe-4S dicluster domain Thimo_1183 PF00572 Ribosomal protein L13 Thimo_1184 PF00380 Ribosomal protein S9/S16 Thimo_1186 PF00267 Gram-negative porin Thimo_1187 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Thimo_1188 PF00585 C-terminal regulatory domain of Threonine dehydratase Thimo_1188 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_1190 PF01812 5-formyltetrahydrofolate cyclo-ligase family Thimo_1192 PF05164 Cell division protein ZapA Thimo_1194 PF03695 Uncharacterised protein family (UPF0149) Thimo_1195 PF00557 Metallopeptidase family M24 Thimo_1195 PF05195 Aminopeptidase P, N-terminal domain Thimo_1196 PF01494 FAD binding domain Thimo_1197 PF01494 FAD binding domain Thimo_1198 PF00365 Phosphofructokinase Thimo_1199 PF03030 Inorganic H+ pyrophosphatase Thimo_1200 PF00719 Inorganic pyrophosphatase Thimo_1201 PF01967 MoaC family Thimo_1203 PF01926 50S ribosome-binding GTPase Thimo_1206 PF14602 Hexapeptide repeat of succinyl-transferase Thimo_1206 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_1206 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Thimo_1207 PF00155 Aminotransferase class I and II Thimo_1211 PF00793 DAHP synthetase I family Thimo_1213 PF03477 ATP cone domain Thimo_1213 PF02867 Ribonucleotide reductase, barrel domain Thimo_1213 PF00317 Ribonucleotide reductase, all-alpha domain Thimo_1216 PF01230 HIT domain Thimo_1217 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thimo_1219 PF00890 FAD binding domain Thimo_1220 PF13187 4Fe-4S dicluster domain Thimo_1220 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Thimo_1223 PF00682 HMGL-like Thimo_1223 PF07836 DmpG-like communication domain Thimo_1226 PF00171 Aldehyde dehydrogenase family Thimo_1227 PF01171 PP-loop family Thimo_1228 PF00873 AcrB/AcrD/AcrF family Thimo_1231 PF00563 EAL domain Thimo_1231 PF00990 Diguanylate cyclase, GGDEF domain Thimo_1231 PF03707 Bacterial signalling protein N terminal repeat Thimo_1234 PF00171 Aldehyde dehydrogenase family Thimo_1235 PF00206 Lyase Thimo_1235 PF10415 Fumarase C C-terminus Thimo_1240 PF02386 Cation transport protein Thimo_1241 PF02080 TrkA-C domain Thimo_1241 PF02254 TrkA-N domain Thimo_1242 PF00158 Sigma-54 interaction domain Thimo_1242 PF02954 Bacterial regulatory protein, Fis family Thimo_1242 PF00072 Response regulator receiver domain Thimo_1243 PF00989 PAS fold Thimo_1243 PF00672 HAMP domain Thimo_1243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_1243 PF00512 His Kinase A (phospho-acceptor) domain Thimo_1245 PF01189 16S rRNA methyltransferase RsmB/F Thimo_1245 PF01029 NusB family Thimo_1246 PF02911 Formyl transferase, C-terminal domain Thimo_1246 PF00551 Formyl transferase Thimo_1247 PF01327 Polypeptide deformylase Thimo_1249 PF02481 DNA recombination-mediator protein A Thimo_1249 PF17782 DprA winged helix domain Thimo_1250 PF04361 Protein of unknown function (DUF494) Thimo_1252 PF00950 ABC 3 transport family Thimo_1253 PF00950 ABC 3 transport family Thimo_1254 PF00005 ABC transporter Thimo_1255 PF01297 Zinc-uptake complex component A periplasmic Thimo_1256 PF13368 Topoisomerase C-terminal repeat Thimo_1256 PF01131 DNA topoisomerase Thimo_1256 PF01751 Toprim domain Thimo_1257 PF01300 Telomere recombination Thimo_1260 PF00149 Calcineurin-like phosphoesterase Thimo_1263 PF01464 Transglycosylase SLT domain Thimo_1264 PF00311 Phosphoenolpyruvate carboxylase Thimo_1265 PF02386 Cation transport protein Thimo_1266 PF03658 RnfH family Ubiquitin Thimo_1267 PF02508 Rnf-Nqr subunit, membrane protein Thimo_1268 PF04205 FMN-binding domain Thimo_1269 PF03116 NQR2, RnfD, RnfE family Thimo_1270 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thimo_1270 PF10531 SLBB domain Thimo_1270 PF13237 4Fe-4S dicluster domain Thimo_1270 PF13375 RnfC Barrel sandwich hybrid domain Thimo_1271 PF04060 Putative Fe-S cluster Thimo_1272 PF02508 Rnf-Nqr subunit, membrane protein Thimo_1273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_1273 PF00989 PAS fold Thimo_1274 PF02954 Bacterial regulatory protein, Fis family Thimo_1274 PF00158 Sigma-54 interaction domain Thimo_1274 PF13185 GAF domain Thimo_1275 PF09827 CRISPR associated protein Cas2 Thimo_1276 PF01867 CRISPR associated protein Cas1 Thimo_1276 PF01930 Domain of unknown function DUF83 Thimo_1290 PF01008 Initiation factor 2 subunit family Thimo_1291 PF01979 Amidohydrolase family Thimo_1293 PF00571 CBS domain Thimo_1294 PF00474 Sodium:solute symporter family Thimo_1296 PF14821 Threonine synthase N terminus Thimo_1296 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_1297 PF00682 HMGL-like Thimo_1299 PF03989 DNA gyrase C-terminal domain, beta-propeller Thimo_1299 PF00521 DNA gyrase/topoisomerase IV, subunit A Thimo_1300 PF00266 Aminotransferase class-V Thimo_1301 PF01842 ACT domain Thimo_1301 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thimo_1301 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thimo_1302 PF00800 Prephenate dehydratase Thimo_1302 PF01842 ACT domain Thimo_1302 PF01817 Chorismate mutase type II Thimo_1303 PF00155 Aminotransferase class I and II Thimo_1304 PF02153 Prephenate dehydrogenase Thimo_1305 PF03600 Citrate transporter Thimo_1309 PF02080 TrkA-C domain Thimo_1309 PF03600 Citrate transporter Thimo_1313 PF00348 Polyprenyl synthetase Thimo_1314 PF00829 Ribosomal prokaryotic L21 protein Thimo_1315 PF01016 Ribosomal L27 protein Thimo_1316 PF01926 50S ribosome-binding GTPase Thimo_1316 PF01018 GTP1/OBG Thimo_1317 PF00696 Amino acid kinase family Thimo_1317 PF01472 PUA domain Thimo_1318 PF00929 Exonuclease Thimo_1319 PF00027 Cyclic nucleotide-binding domain Thimo_1319 PF13545 Crp-like helix-turn-helix domain Thimo_1321 PF06418 CTP synthase N-terminus Thimo_1321 PF00117 Glutamine amidotransferase class-I Thimo_1322 PF00793 DAHP synthetase I family Thimo_1323 PF03952 Enolase, N-terminal domain Thimo_1323 PF00113 Enolase, C-terminal TIM barrel domain Thimo_1324 PF04977 Septum formation initiator Thimo_1325 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thimo_1326 PF02542 YgbB family Thimo_1327 PF01142 tRNA pseudouridine synthase D (TruD) Thimo_1329 PF01975 Survival protein SurE Thimo_1331 PF09335 SNARE associated Golgi protein Thimo_1332 PF01476 LysM domain Thimo_1332 PF01551 Peptidase family M23 Thimo_1333 PF04539 Sigma-70 region 3 Thimo_1333 PF04542 Sigma-70 region 2 Thimo_1333 PF00140 Sigma-70 factor, region 1.2 Thimo_1333 PF04545 Sigma-70, region 4 Thimo_1338 PF00115 Cytochrome C and Quinol oxidase polypeptide I Thimo_1341 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Thimo_1341 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Thimo_1342 PF13746 4Fe-4S dicluster domain Thimo_1342 PF12801 4Fe-4S binding domain Thimo_1342 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Thimo_1344 PF00403 Heavy-metal-associated domain Thimo_1346 PF04055 Radical SAM superfamily Thimo_1346 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Thimo_1347 PF03309 Type III pantothenate kinase Thimo_1348 PF00862 Sucrose synthase Thimo_1348 PF00534 Glycosyl transferases group 1 Thimo_1349 PF01161 Phosphatidylethanolamine-binding protein Thimo_1351 PF03918 Cytochrome C biogenesis protein Thimo_1352 PF08534 Redoxin Thimo_1353 PF01578 Cytochrome C assembly protein Thimo_1353 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Thimo_1354 PF03100 CcmE Thimo_1356 PF01578 Cytochrome C assembly protein Thimo_1357 PF03379 CcmB protein Thimo_1358 PF00005 ABC transporter Thimo_1359 PF03900 Porphobilinogen deaminase, C-terminal domain Thimo_1359 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Thimo_1360 PF02602 Uroporphyrinogen-III synthase HemD Thimo_1365 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thimo_1366 PF01432 Peptidase family M3 Thimo_1368 PF00132 Bacterial transferase hexapeptide (six repeats) Thimo_1369 PF02470 MlaD protein Thimo_1371 PF04403 Paraquat-inducible protein A Thimo_1372 PF01641 SelR domain Thimo_1374 PF01329 Pterin 4 alpha carbinolamine dehydratase Thimo_1378 PF02146 Sir2 family Thimo_1383 PF03358 NADPH-dependent FMN reductase Thimo_1386 PF00072 Response regulator receiver domain Thimo_1386 PF00486 Transcriptional regulatory protein, C terminal Thimo_1387 PF01590 GAF domain Thimo_1387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_1387 PF08446 PAS fold Thimo_1387 PF00360 Phytochrome region Thimo_1387 PF00512 His Kinase A (phospho-acceptor) domain Thimo_1388 PF14791 DNA polymerase beta thumb Thimo_1388 PF02811 PHP domain Thimo_1388 PF14716 Helix-hairpin-helix domain Thimo_1389 PF00300 Histidine phosphatase superfamily (branch 1) Thimo_1394 PF13194 Domain of unknown function (DUF4010) Thimo_1397 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_1397 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thimo_1399 PF00072 Response regulator receiver domain Thimo_1399 PF02954 Bacterial regulatory protein, Fis family Thimo_1399 PF00158 Sigma-54 interaction domain Thimo_1403 PF01180 Dihydroorotate dehydrogenase Thimo_1404 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thimo_1404 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thimo_1404 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thimo_1404 PF10371 Domain of unknown function Thimo_1404 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thimo_1405 PF00282 Pyridoxal-dependent decarboxylase conserved domain Thimo_1407 PF09967 VWA-like domain (DUF2201) Thimo_1407 PF13203 Putative metallopeptidase domain Thimo_1413 PF01435 Peptidase family M48 Thimo_1413 PF13181 Tetratricopeptide repeat Thimo_1414 PF13439 Glycosyltransferase Family 4 Thimo_1414 PF00534 Glycosyl transferases group 1 Thimo_1415 PF00534 Glycosyl transferases group 1 Thimo_1416 PF13439 Glycosyltransferase Family 4 Thimo_1416 PF00534 Glycosyl transferases group 1 Thimo_1417 PF00534 Glycosyl transferases group 1 Thimo_1430 PF00005 ABC transporter Thimo_1430 PF02687 FtsX-like permease family Thimo_1430 PF12704 MacB-like periplasmic core domain Thimo_1431 PF02687 FtsX-like permease family Thimo_1431 PF12704 MacB-like periplasmic core domain Thimo_1431 PF00005 ABC transporter Thimo_1432 PF00005 ABC transporter Thimo_1436 PF02801 Beta-ketoacyl synthase, C-terminal domain Thimo_1436 PF00109 Beta-ketoacyl synthase, N-terminal domain Thimo_1436 PF14765 Polyketide synthase dehydratase Thimo_1436 PF08659 KR domain Thimo_1436 PF00550 Phosphopantetheine attachment site Thimo_1436 PF00698 Acyl transferase domain Thimo_1436 PF16197 Ketoacyl-synthetase C-terminal extension Thimo_1437 PF00109 Beta-ketoacyl synthase, N-terminal domain Thimo_1437 PF00550 Phosphopantetheine attachment site Thimo_1437 PF14765 Polyketide synthase dehydratase Thimo_1437 PF00698 Acyl transferase domain Thimo_1437 PF08659 KR domain Thimo_1437 PF02801 Beta-ketoacyl synthase, C-terminal domain Thimo_1437 PF16197 Ketoacyl-synthetase C-terminal extension Thimo_1437 PF00107 Zinc-binding dehydrogenase Thimo_1437 PF08240 Alcohol dehydrogenase GroES-like domain Thimo_1438 PF00550 Phosphopantetheine attachment site Thimo_1441 PF00561 alpha/beta hydrolase fold Thimo_1442 PF00561 alpha/beta hydrolase fold Thimo_1444 PF07715 TonB-dependent Receptor Plug Domain Thimo_1444 PF00593 TonB dependent receptor Thimo_1448 PF13439 Glycosyltransferase Family 4 Thimo_1448 PF00534 Glycosyl transferases group 1 Thimo_1450 PF02310 B12 binding domain Thimo_1450 PF13282 Domain of unknown function (DUF4070) Thimo_1450 PF04055 Radical SAM superfamily Thimo_1454 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_1454 PF03466 LysR substrate binding domain Thimo_1455 PF08267 Cobalamin-independent synthase, N-terminal domain Thimo_1455 PF01717 Cobalamin-independent synthase, Catalytic domain Thimo_1456 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thimo_1457 PF01569 PAP2 superfamily Thimo_1458 PF00534 Glycosyl transferases group 1 Thimo_1458 PF13439 Glycosyltransferase Family 4 Thimo_1462 PF00293 NUDIX domain Thimo_1463 PF02896 PEP-utilising enzyme, TIM barrel domain Thimo_1463 PF01590 GAF domain Thimo_1463 PF00391 PEP-utilising enzyme, mobile domain Thimo_1463 PF05524 PEP-utilising enzyme, N-terminal Thimo_1464 PF02913 FAD linked oxidases, C-terminal domain Thimo_1464 PF01565 FAD binding domain Thimo_1466 PF02021 Uncharacterised protein family UPF0102 Thimo_1467 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_1468 PF08328 Adenylosuccinate lyase C-terminal Thimo_1468 PF00206 Lyase Thimo_1469 PF00330 Aconitase family (aconitate hydratase) Thimo_1469 PF00694 Aconitase C-terminal domain Thimo_1470 PF01235 Sodium:alanine symporter family Thimo_1471 PF01722 BolA-like protein Thimo_1478 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Thimo_1478 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Thimo_1479 PF02899 Phage integrase, N-terminal SAM-like domain Thimo_1479 PF00589 Phage integrase family Thimo_1480 PF04461 Protein of unknown function (DUF520) Thimo_1481 PF10411 Disulfide bond isomerase protein N-terminus Thimo_1481 PF13098 Thioredoxin-like domain Thimo_1486 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_1487 PF16886 ATPsynthase alpha/beta subunit N-term extension Thimo_1487 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_1487 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thimo_1488 PF01991 ATP synthase (E/31 kDa) subunit Thimo_1490 PF00137 ATP synthase subunit C Thimo_1491 PF01496 V-type ATPase 116kDa subunit family Thimo_1506 PF01985 CRS1 / YhbY (CRM) domain Thimo_1509 PF01250 Ribosomal protein S6 Thimo_1510 PF01084 Ribosomal protein S18 Thimo_1512 PF01281 Ribosomal protein L9, N-terminal domain Thimo_1512 PF03948 Ribosomal protein L9, C-terminal domain Thimo_1513 PF03796 DnaB-like helicase C terminal domain Thimo_1513 PF00772 DnaB-like helicase N terminal domain Thimo_1514 PF01168 Alanine racemase, N-terminal domain Thimo_1514 PF00842 Alanine racemase, C-terminal domain Thimo_1515 PF18073 Rubredoxin metal binding domain Thimo_1516 PF00534 Glycosyl transferases group 1 Thimo_1516 PF13579 Glycosyl transferase 4-like domain Thimo_1519 PF09335 SNARE associated Golgi protein Thimo_1521 PF05532 CsbD-like Thimo_1522 PF01679 Proteolipid membrane potential modulator Thimo_1523 PF01594 AI-2E family transporter Thimo_1524 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Thimo_1524 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Thimo_1525 PF00080 Copper/zinc superoxide dismutase (SODC) Thimo_1530 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Thimo_1536 PF00005 ABC transporter Thimo_1537 PF00498 FHA domain Thimo_1537 PF01061 ABC-2 type transporter Thimo_1537 PF00005 ABC transporter Thimo_1538 PF00069 Protein kinase domain Thimo_1538 PF03793 PASTA domain Thimo_1542 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_1543 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_1544 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thimo_1547 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thimo_1550 PF02386 Cation transport protein Thimo_1559 PF03631 Virulence factor BrkB Thimo_1560 PF06004 Bacterial protein of unknown function (DUF903) Thimo_1561 PF13291 ACT domain Thimo_1561 PF04607 Region found in RelA / SpoT proteins Thimo_1561 PF02824 TGS domain Thimo_1565 PF00005 ABC transporter Thimo_1566 PF13472 GDSL-like Lipase/Acylhydrolase family Thimo_1568 PF02470 MlaD protein Thimo_1570 PF08448 PAS fold Thimo_1570 PF01739 CheR methyltransferase, SAM binding domain Thimo_1570 PF01339 CheB methylesterase Thimo_1570 PF03705 CheR methyltransferase, all-alpha domain Thimo_1571 PF00072 Response regulator receiver domain Thimo_1571 PF01339 CheB methylesterase Thimo_1573 PF03699 Uncharacterised protein family (UPF0182) Thimo_1576 PF01527 Transposase Thimo_1578 PF04204 Homoserine O-succinyltransferase Thimo_1580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thimo_1580 PF00384 Molybdopterin oxidoreductase Thimo_1580 PF01568 Molydopterin dinucleotide binding domain Thimo_1581 PF12800 4Fe-4S binding domain Thimo_1581 PF13247 4Fe-4S dicluster domain Thimo_1582 PF04976 DMSO reductase anchor subunit (DmsC) Thimo_1583 PF04264 YceI-like domain Thimo_1584 PF01292 Prokaryotic cytochrome b561 Thimo_1588 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_1588 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_1589 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_1589 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thimo_1590 PF03350 Uncharacterized protein family, UPF0114 Thimo_1591 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Thimo_1591 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Thimo_1592 PF00271 Helicase conserved C-terminal domain Thimo_1592 PF08494 DEAD/H associated Thimo_1592 PF00270 DEAD/DEAH box helicase Thimo_1597 PF03976 Polyphosphate kinase 2 (PPK2) Thimo_1598 PF03061 Thioesterase superfamily Thimo_1602 PF00873 AcrB/AcrD/AcrF family Thimo_1604 PF00905 Penicillin binding protein transpeptidase domain Thimo_1604 PF00912 Transglycosylase Thimo_1604 PF17092 Penicillin-binding protein OB-like domain Thimo_1605 PF00270 DEAD/DEAH box helicase Thimo_1605 PF04408 Helicase associated domain (HA2) Thimo_1605 PF00271 Helicase conserved C-terminal domain Thimo_1605 PF08482 ATP-dependent helicase C-terminal Thimo_1607 PF00990 Diguanylate cyclase, GGDEF domain Thimo_1607 PF00072 Response regulator receiver domain Thimo_1609 PF06071 Protein of unknown function (DUF933) Thimo_1609 PF01926 50S ribosome-binding GTPase Thimo_1613 PF03411 Penicillin-insensitive murein endopeptidase Thimo_1615 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_1616 PF05958 tRNA (Uracil-5-)-methyltransferase Thimo_1617 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Thimo_1619 PF02811 PHP domain Thimo_1619 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thimo_1619 PF01336 OB-fold nucleic acid binding domain Thimo_1619 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thimo_1619 PF14579 Helix-hairpin-helix motif Thimo_1621 PF00154 recA bacterial DNA recombination protein Thimo_1622 PF00717 Peptidase S24-like Thimo_1622 PF01726 LexA DNA binding domain Thimo_1623 PF01177 Asp/Glu/Hydantoin racemase Thimo_1628 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thimo_1631 PF12697 Alpha/beta hydrolase family Thimo_1632 PF00551 Formyl transferase Thimo_1633 PF02769 AIR synthase related protein, C-terminal domain Thimo_1633 PF00586 AIR synthase related protein, N-terminal domain Thimo_1634 PF01066 CDP-alcohol phosphatidyltransferase Thimo_1635 PF00308 Bacterial dnaA protein Thimo_1636 PF03358 NADPH-dependent FMN reductase Thimo_1637 PF00708 Acylphosphatase Thimo_1640 PF00561 alpha/beta hydrolase fold Thimo_1641 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Thimo_1642 PF00108 Thiolase, N-terminal domain Thimo_1642 PF02803 Thiolase, C-terminal domain Thimo_1643 PF05233 PHB accumulation regulatory domain Thimo_1643 PF07879 PHB/PHA accumulation regulator DNA-binding domain Thimo_1645 PF09361 Phasin protein Thimo_1646 PF00106 short chain dehydrogenase Thimo_1647 PF01784 NIF3 (NGG1p interacting factor 3) Thimo_1648 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Thimo_1648 PF00355 Rieske [2Fe-2S] domain Thimo_1649 PF00032 Cytochrome b(C-terminal)/b6/petD Thimo_1649 PF00033 Cytochrome b/b6/petB Thimo_1650 PF02167 Cytochrome C1 family Thimo_1651 PF00043 Glutathione S-transferase, C-terminal domain Thimo_1651 PF02798 Glutathione S-transferase, N-terminal domain Thimo_1652 PF04386 Stringent starvation protein B Thimo_1658 PF01479 S4 domain Thimo_1659 PF00462 Glutaredoxin Thimo_1660 PF11940 Domain of unknown function (DUF3458) Ig-like fold Thimo_1660 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Thimo_1660 PF01433 Peptidase family M1 domain Thimo_1665 PF01548 Transposase Thimo_1665 PF02371 Transposase IS116/IS110/IS902 family Thimo_1672 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_1673 PF00005 ABC transporter Thimo_1677 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thimo_1677 PF01571 Aminomethyltransferase folate-binding domain Thimo_1678 PF01597 Glycine cleavage H-protein Thimo_1679 PF02347 Glycine cleavage system P-protein Thimo_1680 PF08534 Redoxin Thimo_1681 PF02347 Glycine cleavage system P-protein Thimo_1682 PF01219 Prokaryotic diacylglycerol kinase Thimo_1683 PF00994 Probable molybdopterin binding domain Thimo_1684 PF00994 Probable molybdopterin binding domain Thimo_1684 PF03453 MoeA N-terminal region (domain I and II) Thimo_1684 PF03454 MoeA C-terminal region (domain IV) Thimo_1685 PF02597 ThiS family Thimo_1686 PF00679 Elongation factor G C-terminus Thimo_1686 PF03144 Elongation factor Tu domain 2 Thimo_1686 PF00009 Elongation factor Tu GTP binding domain Thimo_1686 PF03764 Elongation factor G, domain IV Thimo_1686 PF14492 Elongation Factor G, domain II Thimo_1687 PF17969 L,D-transpeptidase C-terminal domain Thimo_1687 PF03734 L,D-transpeptidase catalytic domain Thimo_1690 PF00072 Response regulator receiver domain Thimo_1691 PF01627 Hpt domain Thimo_1691 PF00072 Response regulator receiver domain Thimo_1691 PF00512 His Kinase A (phospho-acceptor) domain Thimo_1691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_1692 PF11741 AMIN domain Thimo_1692 PF01520 N-acetylmuramoyl-L-alanine amidase Thimo_1693 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thimo_1694 PF01256 Carbohydrate kinase Thimo_1694 PF03853 YjeF-related protein N-terminus Thimo_1695 PF00764 Arginosuccinate synthase Thimo_1697 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thimo_1698 PF00268 Ribonucleotide reductase, small chain Thimo_1699 PF02779 Transketolase, pyrimidine binding domain Thimo_1699 PF02780 Transketolase, C-terminal domain Thimo_1700 PF00676 Dehydrogenase E1 component Thimo_1701 PF03466 LysR substrate binding domain Thimo_1701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_1703 PF01063 Amino-transferase class IV Thimo_1704 PF08335 GlnD PII-uridylyltransferase Thimo_1704 PF03710 Glutamate-ammonia ligase adenylyltransferase Thimo_1706 PF01455 HupF/HypC family Thimo_1708 PF03618 Kinase/pyrophosphorylase Thimo_1711 PF18073 Rubredoxin metal binding domain Thimo_1712 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Thimo_1713 PF00483 Nucleotidyl transferase Thimo_1714 PF01895 PhoU domain Thimo_1718 PF01381 Helix-turn-helix Thimo_1722 PF00128 Alpha amylase, catalytic domain Thimo_1722 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thimo_1723 PF00512 His Kinase A (phospho-acceptor) domain Thimo_1723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_1723 PF00672 HAMP domain Thimo_1724 PF00072 Response regulator receiver domain Thimo_1724 PF00486 Transcriptional regulatory protein, C terminal Thimo_1731 PF00027 Cyclic nucleotide-binding domain Thimo_1731 PF13545 Crp-like helix-turn-helix domain Thimo_1733 PF02698 DUF218 domain Thimo_1734 PF13667 ThiC-associated domain Thimo_1734 PF01964 Radical SAM ThiC family Thimo_1735 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thimo_1735 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thimo_1737 PF01510 N-acetylmuramoyl-L-alanine amidase Thimo_1740 PF03485 Arginyl tRNA synthetase N terminal domain Thimo_1740 PF05746 DALR anticodon binding domain Thimo_1740 PF00750 tRNA synthetases class I (R) Thimo_1741 PF00795 Carbon-nitrogen hydrolase Thimo_1741 PF00583 Acetyltransferase (GNAT) family Thimo_1742 PF00107 Zinc-binding dehydrogenase Thimo_1742 PF08240 Alcohol dehydrogenase GroES-like domain Thimo_1744 PF00011 Hsp20/alpha crystallin family Thimo_1745 PF07995 Glucose / Sorbosone dehydrogenase Thimo_1760 PF01547 Bacterial extracellular solute-binding protein Thimo_1761 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_1762 PF00005 ABC transporter Thimo_1762 PF12857 TOBE-like domain Thimo_1767 PF00589 Phage integrase family Thimo_1767 PF13356 Arm DNA-binding domain Thimo_1779 PF00271 Helicase conserved C-terminal domain Thimo_1779 PF00176 SNF2 family N-terminal domain Thimo_1779 PF12419 SNF2 Helicase protein Thimo_1783 PF02649 Type I GTP cyclohydrolase folE2 Thimo_1784 PF00348 Polyprenyl synthetase Thimo_1785 PF02609 Exonuclease VII small subunit Thimo_1786 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_1786 PF01751 Toprim domain Thimo_1786 PF00204 DNA gyrase B Thimo_1786 PF00986 DNA gyrase B subunit, carboxyl terminus Thimo_1788 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Thimo_1790 PF00361 Proton-conducting membrane transporter Thimo_1791 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thimo_1792 PF13244 Domain of unknown function (DUF4040) Thimo_1792 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thimo_1792 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Thimo_1792 PF00361 Proton-conducting membrane transporter Thimo_1793 PF01545 Cation efflux family Thimo_1795 PF02421 Ferrous iron transport protein B Thimo_1795 PF07670 Nucleoside recognition Thimo_1795 PF07664 Ferrous iron transport protein B C terminus Thimo_1795 PF17910 FeoB cytosolic helical domain Thimo_1796 PF04023 FeoA domain Thimo_1798 PF13649 Methyltransferase domain Thimo_1799 PF08241 Methyltransferase domain Thimo_1800 PF01227 GTP cyclohydrolase I Thimo_1801 PF13537 Glutamine amidotransferase domain Thimo_1801 PF00733 Asparagine synthase Thimo_1803 PF05343 M42 glutamyl aminopeptidase Thimo_1804 PF03193 RsgA GTPase Thimo_1805 PF00929 Exonuclease Thimo_1806 PF08331 Domain of unknown function (DUF1730) Thimo_1808 PF10576 Iron-sulfur binding domain of endonuclease III Thimo_1808 PF00633 Helix-hairpin-helix motif Thimo_1808 PF00730 HhH-GPD superfamily base excision DNA repair protein Thimo_1809 PF00850 Histone deacetylase domain Thimo_1810 PF13380 CoA binding domain Thimo_1810 PF13607 Succinyl-CoA ligase like flavodoxin domain Thimo_1810 PF00583 Acetyltransferase (GNAT) family Thimo_1811 PF01055 Glycosyl hydrolases family 31 Thimo_1811 PF13802 Galactose mutarotase-like Thimo_1811 PF17137 Domain of unknown function (DUF5110) Thimo_1811 PF16338 Domain of unknown function (DUF4968) Thimo_1812 PF01022 Bacterial regulatory protein, arsR family Thimo_1813 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thimo_1814 PF01758 Sodium Bile acid symporter family Thimo_1815 PF03773 Predicted permease Thimo_1819 PF02151 UvrB/uvrC motif Thimo_1819 PF12344 Ultra-violet resistance protein B Thimo_1819 PF17757 UvrB interaction domain Thimo_1819 PF00271 Helicase conserved C-terminal domain Thimo_1819 PF04851 Type III restriction enzyme, res subunit Thimo_1822 PF04542 Sigma-70 region 2 Thimo_1822 PF08281 Sigma-70, region 4 Thimo_1824 PF03888 MucB/RseB N-terminal domain Thimo_1824 PF17188 MucB/RseB C-terminal domain Thimo_1826 PF13180 PDZ domain Thimo_1827 PF06421 GTP-binding protein LepA C-terminus Thimo_1827 PF00009 Elongation factor Tu GTP binding domain Thimo_1827 PF00679 Elongation factor G C-terminus Thimo_1828 PF10502 Signal peptidase, peptidase S26 Thimo_1830 PF14622 Ribonuclease-III-like Thimo_1830 PF00035 Double-stranded RNA binding motif Thimo_1831 PF01926 50S ribosome-binding GTPase Thimo_1831 PF07650 KH domain Thimo_1832 PF02565 Recombination protein O C terminal Thimo_1832 PF11967 Recombination protein O N terminal Thimo_1833 PF00483 Nucleotidyl transferase Thimo_1837 PF03600 Citrate transporter Thimo_1839 PF00762 Ferrochelatase Thimo_1843 PF00690 Cation transporter/ATPase, N-terminus Thimo_1843 PF00689 Cation transporting ATPase, C-terminus Thimo_1844 PF00561 alpha/beta hydrolase fold Thimo_1845 PF02580 D-Tyr-tRNA(Tyr) deacylase Thimo_1846 PF00475 Imidazoleglycerol-phosphate dehydratase Thimo_1847 PF00977 Histidine biosynthesis protein Thimo_1848 PF01502 Phosphoribosyl-AMP cyclohydrolase Thimo_1849 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Thimo_1850 PF02416 mttA/Hcf106 family Thimo_1851 PF02416 mttA/Hcf106 family Thimo_1852 PF00902 Sec-independent protein translocase protein (TatC) Thimo_1853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_1853 PF03466 LysR substrate binding domain Thimo_1854 PF00999 Sodium/hydrogen exchanger family Thimo_1854 PF02254 TrkA-N domain Thimo_1856 PF07075 Protein of unknown function (DUF1343) Thimo_1857 PF00977 Histidine biosynthesis protein Thimo_1859 PF00571 CBS domain Thimo_1859 PF02163 Peptidase family M50 Thimo_1861 PF01965 DJ-1/PfpI family Thimo_1864 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thimo_1865 PF01427 D-ala-D-ala dipeptidase Thimo_1868 PF00873 AcrB/AcrD/AcrF family Thimo_1869 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_1870 PF01734 Patatin-like phospholipase Thimo_1872 PF08241 Methyltransferase domain Thimo_1874 PF01292 Prokaryotic cytochrome b561 Thimo_1876 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thimo_1877 PF02224 Cytidylate kinase Thimo_1878 PF00575 S1 RNA binding domain Thimo_1879 PF00216 Bacterial DNA-binding protein Thimo_1881 PF04314 Copper chaperone PCu(A)C Thimo_1883 PF13411 MerR HTH family regulatory protein Thimo_1885 PF00881 Nitroreductase family Thimo_1886 PF01022 Bacterial regulatory protein, arsR family Thimo_1887 PF01926 50S ribosome-binding GTPase Thimo_1887 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thimo_1888 PF13360 PQQ-like domain Thimo_1889 PF09976 Tetratricopeptide repeat-like domain Thimo_1890 PF13393 Histidyl-tRNA synthetase Thimo_1890 PF03129 Anticodon binding domain Thimo_1891 PF13464 Domain of unknown function (DUF4115) Thimo_1893 PF04055 Radical SAM superfamily Thimo_1894 PF00334 Nucleoside diphosphate kinase Thimo_1895 PF03734 L,D-transpeptidase catalytic domain Thimo_1896 PF10672 S-adenosylmethionine-dependent methyltransferase Thimo_1896 PF17785 PUA-like domain Thimo_1899 PF01048 Phosphorylase superfamily Thimo_1909 PF01381 Helix-turn-helix Thimo_1914 PF00924 Mechanosensitive ion channel Thimo_1916 PF00343 Carbohydrate phosphorylase Thimo_1917 PF09364 XFP N-terminal domain Thimo_1917 PF09363 XFP C-terminal domain Thimo_1917 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Thimo_1919 PF02913 FAD linked oxidases, C-terminal domain Thimo_1919 PF01565 FAD binding domain Thimo_1920 PF01565 FAD binding domain Thimo_1921 PF13183 4Fe-4S dicluster domain Thimo_1921 PF02754 Cysteine-rich domain Thimo_1922 PF00270 DEAD/DEAH box helicase Thimo_1922 PF00271 Helicase conserved C-terminal domain Thimo_1923 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Thimo_1924 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thimo_1924 PF04073 Aminoacyl-tRNA editing domain Thimo_1924 PF03129 Anticodon binding domain Thimo_1925 PF07977 FabA-like domain Thimo_1926 PF00571 CBS domain Thimo_1926 PF03471 Transporter associated domain Thimo_1926 PF01595 Cyclin M transmembrane N-terminal domain Thimo_1929 PF05661 Protein of unknown function (DUF808) Thimo_1930 PF00909 Ammonium Transporter Family Thimo_1931 PF00873 AcrB/AcrD/AcrF family Thimo_1932 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_1932 PF00529 HlyD membrane-fusion protein of T1SS Thimo_1933 PF01515 Phosphate acetyl/butaryl transferase Thimo_1933 PF07085 DRTGG domain Thimo_1934 PF00871 Acetokinase family Thimo_1936 PF00266 Aminotransferase class-V Thimo_1939 PF13439 Glycosyltransferase Family 4 Thimo_1939 PF00534 Glycosyl transferases group 1 Thimo_1941 PF01556 DnaJ C terminal domain Thimo_1941 PF00226 DnaJ domain Thimo_1942 PF17862 AAA+ lid domain Thimo_1942 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_1942 PF06480 FtsH Extracellular Thimo_1942 PF01434 Peptidase family M41 Thimo_1944 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Thimo_1945 PF13439 Glycosyltransferase Family 4 Thimo_1945 PF00534 Glycosyl transferases group 1 Thimo_1946 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Thimo_1948 PF14306 PUA-like domain Thimo_1948 PF01747 ATP-sulfurylase Thimo_1951 PF01464 Transglycosylase SLT domain Thimo_1952 PF05951 Bacterial protein of unknown function (DUF882) Thimo_1953 PF00773 RNB domain Thimo_1954 PF01571 Aminomethyltransferase folate-binding domain Thimo_1955 PF01336 OB-fold nucleic acid binding domain Thimo_1955 PF00152 tRNA synthetases class II (D, K and N) Thimo_1957 PF17788 HypF Kae1-like domain Thimo_1957 PF00708 Acylphosphatase Thimo_1957 PF07503 HypF finger Thimo_1957 PF01300 Telomere recombination Thimo_1958 PF00899 ThiF family Thimo_1959 PF01026 TatD related DNase Thimo_1961 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Thimo_1964 PF00753 Metallo-beta-lactamase superfamily Thimo_1966 PF00582 Universal stress protein family Thimo_1967 PF02785 Biotin carboxylase C-terminal domain Thimo_1967 PF00289 Biotin carboxylase, N-terminal domain Thimo_1967 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thimo_1968 PF00682 HMGL-like Thimo_1968 PF00364 Biotin-requiring enzyme Thimo_1968 PF02436 Conserved carboxylase domain Thimo_1970 PF11127 Protein of unknown function (DUF2892) Thimo_1970 PF00581 Rhodanese-like domain Thimo_1972 PF00795 Carbon-nitrogen hydrolase Thimo_1973 PF02600 Disulfide bond formation protein DsbB Thimo_1974 PF01464 Transglycosylase SLT domain Thimo_1974 PF01551 Peptidase family M23 Thimo_1974 PF10145 Phage-related minor tail protein Thimo_1975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thimo_1975 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thimo_1976 PF00534 Glycosyl transferases group 1 Thimo_1976 PF13439 Glycosyltransferase Family 4 Thimo_1979 PF00873 AcrB/AcrD/AcrF family Thimo_1980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_1984 PF04851 Type III restriction enzyme, res subunit Thimo_1984 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Thimo_1984 PF00271 Helicase conserved C-terminal domain Thimo_1984 PF08463 EcoEI R protein C-terminal Thimo_1985 PF12161 HsdM N-terminal domain Thimo_1985 PF02384 N-6 DNA Methylase Thimo_1990 PF01420 Type I restriction modification DNA specificity domain Thimo_1995 PF00005 ABC transporter Thimo_1996 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thimo_1999 PF03776 Septum formation topological specificity factor MinE Thimo_2000 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_2001 PF03775 Septum formation inhibitor MinC, C-terminal domain Thimo_2001 PF05209 Septum formation inhibitor MinC, N-terminal domain Thimo_2002 PF01230 HIT domain Thimo_2003 PF02132 RecR protein Thimo_2003 PF13662 Toprim domain Thimo_2004 PF02575 YbaB/EbfC DNA-binding family Thimo_2006 PF02910 Fumarate reductase flavoprotein C-term Thimo_2006 PF00890 FAD binding domain Thimo_2007 PF12848 ABC transporter Thimo_2007 PF00005 ABC transporter Thimo_2008 PF00563 EAL domain Thimo_2008 PF08448 PAS fold Thimo_2008 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2011 PF13401 AAA domain Thimo_2011 PF01471 Putative peptidoglycan binding domain Thimo_2012 PF13660 Domain of unknown function (DUF4147) Thimo_2012 PF05161 MOFRL family Thimo_2015 PF01594 AI-2E family transporter Thimo_2016 PF08448 PAS fold Thimo_2016 PF00563 EAL domain Thimo_2016 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2017 PF01546 Peptidase family M20/M25/M40 Thimo_2017 PF07687 Peptidase dimerisation domain Thimo_2018 PF04434 SWIM zinc finger Thimo_2019 PF12419 SNF2 Helicase protein Thimo_2019 PF00271 Helicase conserved C-terminal domain Thimo_2019 PF00176 SNF2 family N-terminal domain Thimo_2023 PF05598 Transposase domain (DUF772) Thimo_2023 PF01609 Transposase DDE domain Thimo_2026 PF00155 Aminotransferase class I and II Thimo_2026 PF00392 Bacterial regulatory proteins, gntR family Thimo_2027 PF13649 Methyltransferase domain Thimo_2028 PF13333 Integrase core domain Thimo_2028 PF00665 Integrase core domain Thimo_2028 PF13276 HTH-like domain Thimo_2029 PF01527 Transposase Thimo_2036 PF04362 Bacterial Fe(2+) trafficking Thimo_2037 PF00633 Helix-hairpin-helix motif Thimo_2037 PF00730 HhH-GPD superfamily base excision DNA repair protein Thimo_2037 PF14815 NUDIX domain Thimo_2040 PF00501 AMP-binding enzyme Thimo_2041 PF02597 ThiS family Thimo_2041 PF05690 Thiazole biosynthesis protein ThiG Thimo_2042 PF05690 Thiazole biosynthesis protein ThiG Thimo_2043 PF02390 Putative methyltransferase Thimo_2044 PF00005 ABC transporter Thimo_2044 PF08402 TOBE domain Thimo_2045 PF03649 Uncharacterised protein family (UPF0014) Thimo_2046 PF01636 Phosphotransferase enzyme family Thimo_2049 PF00210 Ferritin-like domain Thimo_2050 PF00210 Ferritin-like domain Thimo_2055 PF00563 EAL domain Thimo_2055 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2055 PF03707 Bacterial signalling protein N terminal repeat Thimo_2056 PF13533 Biotin-lipoyl like Thimo_2057 PF00873 AcrB/AcrD/AcrF family Thimo_2058 PF13091 PLD-like domain Thimo_2058 PF13396 Phospholipase_D-nuclease N-terminal Thimo_2059 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thimo_2059 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_2062 PF00072 Response regulator receiver domain Thimo_2062 PF00486 Transcriptional regulatory protein, C terminal Thimo_2063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2063 PF00672 HAMP domain Thimo_2063 PF00512 His Kinase A (phospho-acceptor) domain Thimo_2064 PF06123 Inner membrane protein CreD Thimo_2070 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_2071 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_2072 PF00933 Glycosyl hydrolase family 3 N terminal domain Thimo_2076 PF02424 ApbE family Thimo_2077 PF01479 S4 domain Thimo_2077 PF00849 RNA pseudouridylate synthase Thimo_2078 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thimo_2081 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Thimo_2081 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thimo_2082 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_2082 PF07497 Rho termination factor, RNA-binding domain Thimo_2082 PF07498 Rho termination factor, N-terminal domain Thimo_2083 PF00085 Thioredoxin Thimo_2084 PF00271 Helicase conserved C-terminal domain Thimo_2084 PF00270 DEAD/DEAH box helicase Thimo_2085 PF13419 Haloacid dehalogenase-like hydrolase Thimo_2086 PF00293 NUDIX domain Thimo_2087 PF00654 Voltage gated chloride channel Thimo_2089 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thimo_2091 PF01176 Translation initiation factor 1A / IF-1 Thimo_2092 PF02861 Clp amino terminal domain, pathogenicity island component Thimo_2092 PF17871 AAA lid domain Thimo_2092 PF10431 C-terminal, D2-small domain, of ClpB protein Thimo_2092 PF07724 AAA domain (Cdc48 subfamily) Thimo_2092 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_2093 PF02617 ATP-dependent Clp protease adaptor protein ClpS Thimo_2094 PF00313 'Cold-shock' DNA-binding domain Thimo_2096 PF04356 Protein of unknown function (DUF489) Thimo_2098 PF00814 Glycoprotease family Thimo_2099 PF13307 Helicase C-terminal domain Thimo_2099 PF06733 DEAD_2 Thimo_2101 PF00912 Transglycosylase Thimo_2101 PF00905 Penicillin binding protein transpeptidase domain Thimo_2101 PF14814 Bifunctional transglycosylase second domain Thimo_2102 PF01061 ABC-2 type transporter Thimo_2103 PF00005 ABC transporter Thimo_2109 PF05192 MutS domain III Thimo_2109 PF05188 MutS domain II Thimo_2109 PF01624 MutS domain I Thimo_2109 PF05190 MutS family domain IV Thimo_2109 PF00488 MutS domain V Thimo_2110 PF12697 Alpha/beta hydrolase family Thimo_2110 PF08241 Methyltransferase domain Thimo_2111 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_2112 PF00391 PEP-utilising enzyme, mobile domain Thimo_2112 PF02896 PEP-utilising enzyme, TIM barrel domain Thimo_2112 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thimo_2119 PF09529 Integral membrane protein (intg_mem_TP0381) Thimo_2124 PF05981 CreA protein Thimo_2128 PF08411 Exonuclease C-terminal Thimo_2128 PF00929 Exonuclease Thimo_2129 PF01245 Ribosomal protein L19 Thimo_2130 PF01746 tRNA (Guanine-1)-methyltransferase Thimo_2131 PF01782 RimM N-terminal domain Thimo_2131 PF05239 PRC-barrel domain Thimo_2132 PF00886 Ribosomal protein S16 Thimo_2133 PF00571 CBS domain Thimo_2133 PF03448 MgtE intracellular N domain Thimo_2133 PF01769 Divalent cation transporter Thimo_2134 PF00270 DEAD/DEAH box helicase Thimo_2134 PF00271 Helicase conserved C-terminal domain Thimo_2134 PF03880 DbpA RNA binding domain Thimo_2135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Thimo_2136 PF01355 High potential iron-sulfur protein Thimo_2142 PF17760 UvrA interaction domain Thimo_2142 PF17755 UvrA DNA-binding domain Thimo_2142 PF00005 ABC transporter Thimo_2145 PF00672 HAMP domain Thimo_2145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2145 PF00512 His Kinase A (phospho-acceptor) domain Thimo_2145 PF00989 PAS fold Thimo_2146 PF00072 Response regulator receiver domain Thimo_2146 PF00486 Transcriptional regulatory protein, C terminal Thimo_2155 PF00005 ABC transporter Thimo_2155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thimo_2156 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thimo_2156 PF00005 ABC transporter Thimo_2158 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_2160 PF01740 STAS domain Thimo_2160 PF00916 Sulfate permease family Thimo_2161 PF00691 OmpA family Thimo_2162 PF00317 Ribonucleotide reductase, all-alpha domain Thimo_2162 PF02867 Ribonucleotide reductase, barrel domain Thimo_2162 PF03477 ATP cone domain Thimo_2164 PF00474 Sodium:solute symporter family Thimo_2165 PF00158 Sigma-54 interaction domain Thimo_2165 PF02954 Bacterial regulatory protein, Fis family Thimo_2165 PF00072 Response regulator receiver domain Thimo_2166 PF00664 ABC transporter transmembrane region Thimo_2166 PF00005 ABC transporter Thimo_2167 PF04675 DNA ligase N terminus Thimo_2167 PF04679 ATP dependent DNA ligase C terminal region Thimo_2167 PF01068 ATP dependent DNA ligase domain Thimo_2170 PF00266 Aminotransferase class-V Thimo_2171 PF13545 Crp-like helix-turn-helix domain Thimo_2171 PF00027 Cyclic nucleotide-binding domain Thimo_2172 PF01116 Fructose-bisphosphate aldolase class-II Thimo_2173 PF00224 Pyruvate kinase, barrel domain Thimo_2173 PF02887 Pyruvate kinase, alpha/beta domain Thimo_2174 PF00162 Phosphoglycerate kinase Thimo_2175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thimo_2175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thimo_2176 PF00456 Transketolase, thiamine diphosphate binding domain Thimo_2176 PF02780 Transketolase, C-terminal domain Thimo_2176 PF02779 Transketolase, pyrimidine binding domain Thimo_2178 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thimo_2178 PF02772 S-adenosylmethionine synthetase, central domain Thimo_2178 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thimo_2179 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thimo_2179 PF05221 S-adenosyl-L-homocysteine hydrolase Thimo_2180 PF02219 Methylenetetrahydrofolate reductase Thimo_2181 PF04262 Glutamate-cysteine ligase Thimo_2182 PF17804 Tail specific protease N-terminal domain Thimo_2182 PF03572 Peptidase family S41 Thimo_2182 PF00595 PDZ domain Thimo_2182 PF11818 C-terminal domain of tail specific protease (DUF3340) Thimo_2183 PF01327 Polypeptide deformylase Thimo_2186 PF00849 RNA pseudouridylate synthase Thimo_2186 PF01479 S4 domain Thimo_2187 PF13525 Outer membrane lipoprotein Thimo_2188 PF00543 Nitrogen regulatory protein P-II Thimo_2189 PF02540 NAD synthase Thimo_2189 PF00795 Carbon-nitrogen hydrolase Thimo_2190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2190 PF00512 His Kinase A (phospho-acceptor) domain Thimo_2191 PF00158 Sigma-54 interaction domain Thimo_2191 PF02954 Bacterial regulatory protein, Fis family Thimo_2191 PF00072 Response regulator receiver domain Thimo_2192 PF00696 Amino acid kinase family Thimo_2192 PF00583 Acetyltransferase (GNAT) family Thimo_2196 PF00583 Acetyltransferase (GNAT) family Thimo_2201 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Thimo_2204 PF01207 Dihydrouridine synthase (Dus) Thimo_2208 PF07556 Protein of unknown function (DUF1538) Thimo_2211 PF05116 Sucrose-6F-phosphate phosphohydrolase Thimo_2211 PF05166 YcgL domain Thimo_2212 PF00128 Alpha amylase, catalytic domain Thimo_2213 PF01883 Iron-sulfur cluster assembly protein Thimo_2214 PF01458 Uncharacterized protein family (UPF0051) Thimo_2215 PF00005 ABC transporter Thimo_2216 PF01458 Uncharacterized protein family (UPF0051) Thimo_2218 PF00266 Aminotransferase class-V Thimo_2220 PF02666 Phosphatidylserine decarboxylase Thimo_2221 PF00152 tRNA synthetases class II (D, K and N) Thimo_2222 PF01132 Elongation factor P (EF-P) OB domain Thimo_2222 PF09285 Elongation factor P, C-terminal Thimo_2222 PF08207 Elongation factor P (EF-P) KOW-like domain Thimo_2223 PF04055 Radical SAM superfamily Thimo_2230 PF00873 AcrB/AcrD/AcrF family Thimo_2233 PF00293 NUDIX domain Thimo_2234 PF02445 Quinolinate synthetase A protein Thimo_2236 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thimo_2236 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_2236 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thimo_2252 PF13333 Integrase core domain Thimo_2252 PF00665 Integrase core domain Thimo_2252 PF13276 HTH-like domain Thimo_2253 PF01527 Transposase Thimo_2255 PF10431 C-terminal, D2-small domain, of ClpB protein Thimo_2255 PF02861 Clp amino terminal domain, pathogenicity island component Thimo_2255 PF17871 AAA lid domain Thimo_2255 PF07724 AAA domain (Cdc48 subfamily) Thimo_2255 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_2260 PF01568 Molydopterin dinucleotide binding domain Thimo_2260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Thimo_2260 PF00384 Molybdopterin oxidoreductase Thimo_2262 PF01813 ATP synthase subunit D Thimo_2263 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thimo_2263 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_2264 PF16886 ATPsynthase alpha/beta subunit N-term extension Thimo_2264 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thimo_2264 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thimo_2277 PF00082 Subtilase family Thimo_2281 PF01979 Amidohydrolase family Thimo_2282 PF01293 Phosphoenolpyruvate carboxykinase Thimo_2285 PF00106 short chain dehydrogenase Thimo_2286 PF00355 Rieske [2Fe-2S] domain Thimo_2286 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Thimo_2287 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thimo_2288 PF01258 Prokaryotic dksA/traR C4-type zinc finger Thimo_2289 PF14579 Helix-hairpin-helix motif Thimo_2289 PF02811 PHP domain Thimo_2289 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thimo_2289 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thimo_2289 PF01336 OB-fold nucleic acid binding domain Thimo_2292 PF00072 Response regulator receiver domain Thimo_2294 PF00114 Pilin (bacterial filament) Thimo_2294 PF07963 Prokaryotic N-terminal methylation motif Thimo_2297 PF00478 IMP dehydrogenase / GMP reductase domain Thimo_2297 PF00571 CBS domain Thimo_2302 PF03692 Putative zinc- or iron-chelating domain Thimo_2305 PF03793 PASTA domain Thimo_2305 PF00069 Protein kinase domain Thimo_2315 PF13538 UvrD-like helicase C-terminal domain Thimo_2316 PF00580 UvrD/REP helicase N-terminal domain Thimo_2316 PF12705 PD-(D/E)XK nuclease superfamily Thimo_2316 PF13361 UvrD-like helicase C-terminal domain Thimo_2317 PF17946 RecC C-terminal domain Thimo_2319 PF04364 DNA polymerase III chi subunit, HolC Thimo_2320 PF02789 Cytosol aminopeptidase family, N-terminal domain Thimo_2320 PF00883 Cytosol aminopeptidase family, catalytic domain Thimo_2323 PF00989 PAS fold Thimo_2323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2323 PF00512 His Kinase A (phospho-acceptor) domain Thimo_2324 PF00196 Bacterial regulatory proteins, luxR family Thimo_2324 PF00072 Response regulator receiver domain Thimo_2326 PF17176 tRNA-binding domain Thimo_2326 PF05127 Helicase Thimo_2326 PF08351 Domain of unknown function (DUF1726) Thimo_2326 PF13718 GNAT acetyltransferase 2 Thimo_2328 PF01027 Inhibitor of apoptosis-promoting Bax1 Thimo_2330 PF02403 Seryl-tRNA synthetase N-terminal domain Thimo_2330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thimo_2331 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thimo_2331 PF00588 SpoU rRNA Methylase family Thimo_2332 PF00773 RNB domain Thimo_2332 PF17876 Cold shock domain Thimo_2332 PF08206 Ribonuclease B OB domain Thimo_2332 PF00575 S1 RNA binding domain Thimo_2332 PF08461 Ribonuclease R winged-helix domain Thimo_2334 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Thimo_2334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2334 PF07730 Histidine kinase Thimo_2334 PF00672 HAMP domain Thimo_2335 PF00072 Response regulator receiver domain Thimo_2335 PF00196 Bacterial regulatory proteins, luxR family Thimo_2336 PF00899 ThiF family Thimo_2336 PF00581 Rhodanese-like domain Thimo_2339 PF13344 Haloacid dehalogenase-like hydrolase Thimo_2340 PF14403 Circularly permuted ATP-grasp type 2 Thimo_2340 PF04168 A predicted alpha-helical domain with a conserved ER motif. Thimo_2341 PF01841 Transglutaminase-like superfamily Thimo_2341 PF08379 Bacterial transglutaminase-like N-terminal region Thimo_2343 PF00128 Alpha amylase, catalytic domain Thimo_2343 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thimo_2343 PF11941 Domain of unknown function (DUF3459) Thimo_2344 PF00085 Thioredoxin Thimo_2345 PF00085 Thioredoxin Thimo_2347 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thimo_2348 PF00472 RF-1 domain Thimo_2349 PF01066 CDP-alcohol phosphatidyltransferase Thimo_2351 PF00037 4Fe-4S binding domain Thimo_2351 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thimo_2351 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thimo_2352 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thimo_2354 PF00374 Nickel-dependent hydrogenase Thimo_2358 PF02586 SOS response associated peptidase (SRAP) Thimo_2360 PF00512 His Kinase A (phospho-acceptor) domain Thimo_2360 PF00672 HAMP domain Thimo_2360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2361 PF00486 Transcriptional regulatory protein, C terminal Thimo_2361 PF00072 Response regulator receiver domain Thimo_2363 PF11799 impB/mucB/samB family C-terminal domain Thimo_2363 PF00817 impB/mucB/samB family Thimo_2365 PF17757 UvrB interaction domain Thimo_2365 PF02559 CarD-like/TRCF domain Thimo_2365 PF00270 DEAD/DEAH box helicase Thimo_2365 PF03461 TRCF domain Thimo_2365 PF00271 Helicase conserved C-terminal domain Thimo_2367 PF00581 Rhodanese-like domain Thimo_2369 PF00075 RNase H Thimo_2370 PF08241 Methyltransferase domain Thimo_2371 PF00920 Dehydratase family Thimo_2372 PF01026 TatD related DNase Thimo_2374 PF09115 DNA polymerase III, delta subunit, C terminal Thimo_2375 PF02223 Thymidylate kinase Thimo_2376 PF02618 YceG-like family Thimo_2377 PF01063 Amino-transferase class IV Thimo_2378 PF00109 Beta-ketoacyl synthase, N-terminal domain Thimo_2378 PF02801 Beta-ketoacyl synthase, C-terminal domain Thimo_2379 PF00550 Phosphopantetheine attachment site Thimo_2381 PF00698 Acyl transferase domain Thimo_2382 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thimo_2382 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thimo_2383 PF02504 Fatty acid synthesis protein Thimo_2384 PF01783 Ribosomal L32p protein family Thimo_2385 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thimo_2386 PF00709 Adenylosuccinate synthetase Thimo_2387 PF13393 Histidyl-tRNA synthetase Thimo_2389 PF01145 SPFH domain / Band 7 family Thimo_2390 PF12221 Bacterial membrane protein N terminal Thimo_2390 PF01145 SPFH domain / Band 7 family Thimo_2391 PF16360 GTP-binding GTPase Middle Region Thimo_2391 PF13167 GTP-binding GTPase N-terminal Thimo_2391 PF01926 50S ribosome-binding GTPase Thimo_2392 PF17209 Hfq protein Thimo_2394 PF01119 DNA mismatch repair protein, C-terminal domain Thimo_2394 PF08676 MutL C terminal dimerisation domain Thimo_2397 PF00271 Helicase conserved C-terminal domain Thimo_2397 PF18074 Primosomal protein N C-terminal domain Thimo_2397 PF00270 DEAD/DEAH box helicase Thimo_2397 PF17764 3′ DNA-binding domain (3′BD) Thimo_2397 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thimo_2401 PF00691 OmpA family Thimo_2403 PF03334 Na+/H+ antiporter subunit Thimo_2405 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Thimo_2406 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thimo_2407 PF00361 Proton-conducting membrane transporter Thimo_2408 PF00361 Proton-conducting membrane transporter Thimo_2410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_2411 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thimo_2411 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thimo_2412 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thimo_2416 PF13514 AAA domain Thimo_2417 PF00149 Calcineurin-like phosphoesterase Thimo_2424 PF00266 Aminotransferase class-V Thimo_2426 PF02599 Global regulator protein family Thimo_2427 PF00696 Amino acid kinase family Thimo_2427 PF01842 ACT domain Thimo_2427 PF13840 ACT domain Thimo_2428 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thimo_2428 PF01411 tRNA synthetases class II (A) Thimo_2428 PF02272 DHHA1 domain Thimo_2429 PF02631 RecX family Thimo_2430 PF00154 recA bacterial DNA recombination protein Thimo_2431 PF02834 LigT like Phosphoesterase Thimo_2432 PF02464 Competence-damaged protein Thimo_2434 PF00175 Oxidoreductase NAD-binding domain Thimo_2434 PF00970 Oxidoreductase FAD-binding domain Thimo_2434 PF00111 2Fe-2S iron-sulfur cluster binding domain Thimo_2435 PF01738 Dienelactone hydrolase family Thimo_2436 PF03441 FAD binding domain of DNA photolyase Thimo_2436 PF00875 DNA photolyase Thimo_2437 PF01980 tRNA-methyltransferase O Thimo_2437 PF18389 TrmO C-terminal domain Thimo_2438 PF01750 Hydrogenase maturation protease Thimo_2442 PF04073 Aminoacyl-tRNA editing domain Thimo_2444 PF16193 AAA C-terminal domain Thimo_2444 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_2444 PF12002 MgsA AAA+ ATPase C terminal Thimo_2445 PF03548 Outer membrane lipoprotein carrier protein LolA Thimo_2446 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thimo_2446 PF17854 FtsK alpha domain Thimo_2446 PF01580 FtsK/SpoIIIE family Thimo_2446 PF09397 Ftsk gamma domain Thimo_2447 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_2449 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Thimo_2450 PF04376 Arginine-tRNA-protein transferase, N terminus Thimo_2450 PF04377 Arginine-tRNA-protein transferase, C terminus Thimo_2451 PF01790 Prolipoprotein diacylglyceryl transferase Thimo_2452 PF02769 AIR synthase related protein, C-terminal domain Thimo_2452 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thimo_2452 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Thimo_2457 PF08281 Sigma-70, region 4 Thimo_2457 PF04542 Sigma-70 region 2 Thimo_2461 PF00919 Uncharacterized protein family UPF0004 Thimo_2461 PF18693 TRAM domain Thimo_2461 PF04055 Radical SAM superfamily Thimo_2462 PF01339 CheB methylesterase Thimo_2462 PF08448 PAS fold Thimo_2462 PF01739 CheR methyltransferase, SAM binding domain Thimo_2462 PF03705 CheR methyltransferase, all-alpha domain Thimo_2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_2465 PF00512 His Kinase A (phospho-acceptor) domain Thimo_2465 PF08448 PAS fold Thimo_2465 PF13426 PAS domain Thimo_2465 PF00072 Response regulator receiver domain Thimo_2466 PF00196 Bacterial regulatory proteins, luxR family Thimo_2466 PF00072 Response regulator receiver domain Thimo_2467 PF00924 Mechanosensitive ion channel Thimo_2467 PF05552 Conserved TM helix Thimo_2469 PF13542 Helix-turn-helix domain of transposase family ISL3 Thimo_2469 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Thimo_2469 PF01610 Transposase Thimo_2470 PF10011 Predicted membrane protein (DUF2254) Thimo_2473 PF01594 AI-2E family transporter Thimo_2482 PF04972 BON domain Thimo_2488 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thimo_2488 PF06165 Glycosyltransferase family 36 Thimo_2488 PF10091 Putative glucoamylase Thimo_2489 PF03705 CheR methyltransferase, all-alpha domain Thimo_2489 PF01739 CheR methyltransferase, SAM binding domain Thimo_2489 PF01339 CheB methylesterase Thimo_2489 PF08448 PAS fold Thimo_2490 PF03707 Bacterial signalling protein N terminal repeat Thimo_2490 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2490 PF00563 EAL domain Thimo_2491 PF02401 LytB protein Thimo_2492 PF01266 FAD dependent oxidoreductase Thimo_2498 PF02472 Biopolymer transport protein ExbD/TolR Thimo_2499 PF01618 MotA/TolQ/ExbB proton channel family Thimo_2500 PF07715 TonB-dependent Receptor Plug Domain Thimo_2500 PF00593 TonB dependent receptor Thimo_2501 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thimo_2501 PF07683 Cobalamin synthesis protein cobW C-terminal domain Thimo_2507 PF00005 ABC transporter Thimo_2509 PF01475 Ferric uptake regulator family Thimo_2510 PF00950 ABC 3 transport family Thimo_2511 PF00005 ABC transporter Thimo_2512 PF01297 Zinc-uptake complex component A periplasmic Thimo_2513 PF01258 Prokaryotic dksA/traR C4-type zinc finger Thimo_2515 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thimo_2515 PF07683 Cobalamin synthesis protein cobW C-terminal domain Thimo_2519 PF12704 MacB-like periplasmic core domain Thimo_2519 PF02687 FtsX-like permease family Thimo_2521 PF00005 ABC transporter Thimo_2525 PF01895 PhoU domain Thimo_2526 PF00005 ABC transporter Thimo_2527 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_2528 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_2530 PF01769 Divalent cation transporter Thimo_2530 PF00571 CBS domain Thimo_2530 PF03448 MgtE intracellular N domain Thimo_2531 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Thimo_2532 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Thimo_2533 PF03480 Bacterial extracellular solute-binding protein, family 7 Thimo_2534 PF01113 Dihydrodipicolinate reductase, N-terminus Thimo_2534 PF05173 Dihydrodipicolinate reductase, C-terminus Thimo_2535 PF00226 DnaJ domain Thimo_2535 PF00684 DnaJ central domain Thimo_2535 PF01556 DnaJ C terminal domain Thimo_2536 PF00012 Hsp70 protein Thimo_2537 PF01025 GrpE Thimo_2538 PF01628 HrcA protein C terminal domain Thimo_2538 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Thimo_2539 PF01513 ATP-NAD kinase Thimo_2540 PF02463 RecF/RecN/SMC N terminal domain Thimo_2541 PF01475 Ferric uptake regulator family Thimo_2542 PF04355 SmpA / OmlA family Thimo_2543 PF03658 RnfH family Ubiquitin Thimo_2544 PF03364 Polyketide cyclase / dehydrase and lipid transport Thimo_2545 PF00209 Sodium:neurotransmitter symporter family Thimo_2546 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thimo_2546 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thimo_2546 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thimo_2546 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thimo_2547 PF00809 Pterin binding enzyme Thimo_2548 PF17862 AAA+ lid domain Thimo_2548 PF06480 FtsH Extracellular Thimo_2548 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_2548 PF01434 Peptidase family M41 Thimo_2549 PF01728 FtsJ-like methyltransferase Thimo_2550 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Thimo_2550 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Thimo_2552 PF03544 Gram-negative bacterial TonB protein C-terminal Thimo_2553 PF02622 Uncharacterized ACR, COG1678 Thimo_2554 PF03652 Holliday junction resolvase Thimo_2555 PF00156 Phosphoribosyl transferase domain Thimo_2556 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thimo_2556 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thimo_2557 PF01979 Amidohydrolase family Thimo_2558 PF00175 Oxidoreductase NAD-binding domain Thimo_2558 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thimo_2563 PF17810 Arginine decarboxylase helical bundle domain Thimo_2563 PF17944 Arginine decarboxylase C-terminal helical extension Thimo_2563 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thimo_2564 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thimo_2565 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thimo_2569 PF01722 BolA-like protein Thimo_2570 PF13495 Phage integrase, N-terminal SAM-like domain Thimo_2570 PF00589 Phage integrase family Thimo_2576 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thimo_2579 PF00009 Elongation factor Tu GTP binding domain Thimo_2579 PF16658 Class II release factor RF3, C-terminal domain Thimo_2583 PF00924 Mechanosensitive ion channel Thimo_2584 PF17755 UvrA DNA-binding domain Thimo_2584 PF17760 UvrA interaction domain Thimo_2584 PF00005 ABC transporter Thimo_2585 PF01565 FAD binding domain Thimo_2585 PF02913 FAD linked oxidases, C-terminal domain Thimo_2588 PF00034 Cytochrome c Thimo_2589 PF00171 Aldehyde dehydrogenase family Thimo_2591 PF12833 Helix-turn-helix domain Thimo_2591 PF14525 AraC-binding-like domain Thimo_2592 PF00476 DNA polymerase family A Thimo_2592 PF01612 3'-5' exonuclease Thimo_2592 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Thimo_2592 PF01367 5'-3' exonuclease, C-terminal SAM fold Thimo_2593 PF00072 Response regulator receiver domain Thimo_2593 PF00196 Bacterial regulatory proteins, luxR family Thimo_2597 PF01609 Transposase DDE domain Thimo_2597 PF13808 DDE_Tnp_1-associated Thimo_2598 PF02590 Predicted SPOUT methyltransferase Thimo_2599 PF02545 Maf-like protein Thimo_2600 PF10150 Ribonuclease E/G family Thimo_2600 PF00575 S1 RNA binding domain Thimo_2603 PF00795 Carbon-nitrogen hydrolase Thimo_2604 PF01523 Putative modulator of DNA gyrase Thimo_2605 PF01523 Putative modulator of DNA gyrase Thimo_2607 PF02915 Rubrerythrin Thimo_2608 PF01661 Macro domain Thimo_2609 PF01322 Cytochrome C' Thimo_2613 PF00294 pfkB family carbohydrate kinase Thimo_2616 PF01066 CDP-alcohol phosphatidyltransferase Thimo_2617 PF08459 UvrC Helix-hairpin-helix N-terminal Thimo_2617 PF02151 UvrB/uvrC motif Thimo_2617 PF01541 GIY-YIG catalytic domain Thimo_2618 PF00196 Bacterial regulatory proteins, luxR family Thimo_2618 PF00072 Response regulator receiver domain Thimo_2629 PF00692 dUTPase Thimo_2630 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Thimo_2633 PF01594 AI-2E family transporter Thimo_2635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_2635 PF03466 LysR substrate binding domain Thimo_2637 PF13686 DsrE/DsrF/DrsH-like family Thimo_2638 PF01206 Sulfurtransferase TusA Thimo_2639 PF00581 Rhodanese-like domain Thimo_2640 PF10414 Sirohaem synthase dimerisation region Thimo_2640 PF14824 Sirohaem biosynthesis protein central Thimo_2640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_2641 PF02673 Bacitracin resistance protein BacA Thimo_2642 PF01053 Cys/Met metabolism PLP-dependent enzyme Thimo_2643 PF00156 Phosphoribosyl transferase domain Thimo_2644 PF02674 Colicin V production protein Thimo_2646 PF08245 Mur ligase middle domain Thimo_2646 PF02875 Mur ligase family, glutamate ligase domain Thimo_2647 PF01039 Carboxyl transferase domain Thimo_2647 PF17848 Acetyl-coA carboxylase zinc finger domain Thimo_2648 PF00290 Tryptophan synthase alpha chain Thimo_2649 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_2650 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thimo_2651 PF01416 tRNA pseudouridine synthase Thimo_2653 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thimo_2653 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thimo_2654 PF00180 Isocitrate/isopropylmalate dehydrogenase Thimo_2655 PF00694 Aconitase C-terminal domain Thimo_2656 PF00330 Aconitase family (aconitate hydratase) Thimo_2657 PF01649 Ribosomal protein S20 Thimo_2663 PF01556 DnaJ C terminal domain Thimo_2663 PF00684 DnaJ central domain Thimo_2663 PF00226 DnaJ domain Thimo_2665 PF13614 AAA domain Thimo_2676 PF00953 Glycosyl transferase family 4 Thimo_2677 PF03972 MmgE/PrpD family Thimo_2678 PF00285 Citrate synthase, C-terminal domain Thimo_2680 PF07729 FCD domain Thimo_2680 PF00392 Bacterial regulatory proteins, gntR family Thimo_2681 PF00501 AMP-binding enzyme Thimo_2681 PF16177 Acetyl-coenzyme A synthetase N-terminus Thimo_2681 PF13193 AMP-binding enzyme C-terminal domain Thimo_2687 PF16330 MukB hinge domain Thimo_2687 PF04310 MukB N-terminal Thimo_2693 PF00563 EAL domain Thimo_2693 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2693 PF03707 Bacterial signalling protein N terminal repeat Thimo_2695 PF01464 Transglycosylase SLT domain Thimo_2695 PF14718 Soluble lytic murein transglycosylase L domain Thimo_2698 PF01841 Transglutaminase-like superfamily Thimo_2698 PF13559 Domain of unknown function (DUF4129) Thimo_2698 PF11992 Domain of unknown function (DUF3488) Thimo_2700 PF00128 Alpha amylase, catalytic domain Thimo_2701 PF01844 HNH endonuclease Thimo_2702 PF03150 Di-haem cytochrome c peroxidase Thimo_2702 PF00034 Cytochrome c Thimo_2704 PF02885 Glycosyl transferase family, helical bundle domain Thimo_2704 PF00591 Glycosyl transferase family, a/b domain Thimo_2705 PF00355 Rieske [2Fe-2S] domain Thimo_2710 PF00266 Aminotransferase class-V Thimo_2713 PF13476 AAA domain Thimo_2717 PF13476 AAA domain Thimo_2721 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Thimo_2721 PF04851 Type III restriction enzyme, res subunit Thimo_2721 PF08463 EcoEI R protein C-terminal Thimo_2721 PF00271 Helicase conserved C-terminal domain Thimo_2734 PF04011 LemA family Thimo_2736 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thimo_2736 PF17864 RuvB AAA lid domain Thimo_2736 PF05491 RuvB C-terminal winged helix domain Thimo_2738 PF01758 Sodium Bile acid symporter family Thimo_2739 PF01053 Cys/Met metabolism PLP-dependent enzyme Thimo_2740 PF01370 NAD dependent epimerase/dehydratase family Thimo_2743 PF02527 rRNA small subunit methyltransferase G Thimo_2747 PF00155 Aminotransferase class I and II Thimo_2748 PF00815 Histidinol dehydrogenase Thimo_2749 PF01634 ATP phosphoribosyltransferase Thimo_2750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thimo_2753 PF02470 MlaD protein Thimo_2754 PF02405 Permease MlaE Thimo_2755 PF00005 ABC transporter Thimo_2756 PF00571 CBS domain Thimo_2756 PF01380 SIS domain Thimo_2760 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thimo_2760 PF00005 ABC transporter Thimo_2761 PF04963 Sigma-54 factor, core binding domain Thimo_2761 PF04552 Sigma-54, DNA binding domain Thimo_2761 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thimo_2762 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thimo_2763 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thimo_2765 PF03668 P-loop ATPase protein family Thimo_2767 PF00381 PTS HPr component phosphorylation site Thimo_2768 PF05524 PEP-utilising enzyme, N-terminal Thimo_2768 PF02896 PEP-utilising enzyme, TIM barrel domain Thimo_2768 PF00391 PEP-utilising enzyme, mobile domain Thimo_2770 PF13188 PAS domain Thimo_2770 PF02954 Bacterial regulatory protein, Fis family Thimo_2770 PF13426 PAS domain Thimo_2772 PF02514 CobN/Magnesium Chelatase Thimo_2772 PF11965 Domain of unknown function (DUF3479) Thimo_2774 PF05239 PRC-barrel domain Thimo_2774 PF03967 Photosynthetic reaction centre, H-chain N-terminal region Thimo_2776 PF03099 Biotin/lipoate A/B protein ligase family Thimo_2777 PF00768 D-alanyl-D-alanine carboxypeptidase Thimo_2777 PF07943 Penicillin-binding protein 5, C-terminal domain Thimo_2778 PF03330 Lytic transglycolase Thimo_2778 PF05036 Sporulation related domain Thimo_2779 PF13406 Transglycosylase SLT domain Thimo_2780 PF01098 Cell cycle protein Thimo_2781 PF03717 Penicillin-binding Protein dimerisation domain Thimo_2781 PF00905 Penicillin binding protein transpeptidase domain Thimo_2782 PF04093 rod shape-determining protein MreD Thimo_2783 PF04085 rod shape-determining protein MreC Thimo_2785 PF02686 Glu-tRNAGln amidotransferase C subunit Thimo_2786 PF01425 Amidase Thimo_2787 PF02637 GatB domain Thimo_2787 PF02934 GatB/GatE catalytic domain Thimo_2790 PF04055 Radical SAM superfamily Thimo_2790 PF06969 HemN C-terminal domain Thimo_2791 PF02830 V4R domain Thimo_2792 PF01189 16S rRNA methyltransferase RsmB/F Thimo_2792 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Thimo_2792 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Thimo_2793 PF08443 RimK-like ATP-grasp domain Thimo_2793 PF02080 TrkA-C domain Thimo_2793 PF18030 RimK PreATP-grasp domain Thimo_2795 PF07687 Peptidase dimerisation domain Thimo_2795 PF01546 Peptidase family M20/M25/M40 Thimo_2796 PF14492 Elongation Factor G, domain II Thimo_2796 PF03764 Elongation factor G, domain IV Thimo_2796 PF00009 Elongation factor Tu GTP binding domain Thimo_2796 PF03144 Elongation factor Tu domain 2 Thimo_2796 PF00679 Elongation factor G C-terminus Thimo_2800 PF01618 MotA/TolQ/ExbB proton channel family Thimo_2805 PF01032 FecCD transport family Thimo_2807 PF00005 ABC transporter Thimo_2808 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thimo_2809 PF00034 Cytochrome c Thimo_2810 PF00034 Cytochrome c Thimo_2812 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) Thimo_2814 PF01402 Ribbon-helix-helix protein, copG family Thimo_2814 PF08753 NikR C terminal nickel binding domain Thimo_2815 PF03707 Bacterial signalling protein N terminal repeat Thimo_2815 PF00563 EAL domain Thimo_2815 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2816 PF03705 CheR methyltransferase, all-alpha domain Thimo_2816 PF01339 CheB methylesterase Thimo_2816 PF01739 CheR methyltransferase, SAM binding domain Thimo_2816 PF08448 PAS fold Thimo_2817 PF00072 Response regulator receiver domain Thimo_2817 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2818 PF02607 B12 binding domain Thimo_2818 PF02310 B12 binding domain Thimo_2818 PF13411 MerR HTH family regulatory protein Thimo_2819 PF00691 OmpA family Thimo_2819 PF00223 Photosystem I psaA/psaB protein Thimo_2820 PF00664 ABC transporter transmembrane region Thimo_2820 PF00005 ABC transporter Thimo_2821 PF13411 MerR HTH family regulatory protein Thimo_2822 PF00216 Bacterial DNA-binding protein Thimo_2823 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thimo_2823 PF01588 Putative tRNA binding domain Thimo_2823 PF03147 Ferredoxin-fold anticodon binding domain Thimo_2823 PF03484 tRNA synthetase B5 domain Thimo_2823 PF03483 B3/4 domain Thimo_2824 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Thimo_2824 PF01409 tRNA synthetases class II core domain (F) Thimo_2825 PF00453 Ribosomal protein L20 Thimo_2826 PF01632 Ribosomal protein L35 Thimo_2827 PF05198 Translation initiation factor IF-3, N-terminal domain Thimo_2827 PF00707 Translation initiation factor IF-3, C-terminal domain Thimo_2828 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thimo_2828 PF03129 Anticodon binding domain Thimo_2828 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thimo_2828 PF02824 TGS domain Thimo_2830 PF05683 Fumarase C-terminus Thimo_2830 PF05681 Fumarate hydratase (Fumerase) Thimo_2831 PF00107 Zinc-binding dehydrogenase Thimo_2831 PF08240 Alcohol dehydrogenase GroES-like domain Thimo_2833 PF01196 Ribosomal protein L17 Thimo_2834 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thimo_2834 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thimo_2834 PF01000 RNA polymerase Rpb3/RpoA insert domain Thimo_2835 PF00163 Ribosomal protein S4/S9 N-terminal domain Thimo_2835 PF01479 S4 domain Thimo_2836 PF00411 Ribosomal protein S11 Thimo_2837 PF00416 Ribosomal protein S13/S18 Thimo_2839 PF00444 Ribosomal protein L36 Thimo_2840 PF00344 SecY translocase Thimo_2842 PF00327 Ribosomal protein L30p/L7e Thimo_2843 PF03719 Ribosomal protein S5, C-terminal domain Thimo_2843 PF00333 Ribosomal protein S5, N-terminal domain Thimo_2844 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thimo_2845 PF00347 Ribosomal protein L6 Thimo_2846 PF00410 Ribosomal protein S8 Thimo_2847 PF00253 Ribosomal protein S14p/S29e Thimo_2848 PF00281 Ribosomal protein L5 Thimo_2848 PF00673 ribosomal L5P family C-terminus Thimo_2849 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thimo_2849 PF00467 KOW motif Thimo_2850 PF00238 Ribosomal protein L14p/L23e Thimo_2851 PF00366 Ribosomal protein S17 Thimo_2852 PF00831 Ribosomal L29 protein Thimo_2853 PF00252 Ribosomal protein L16p/L10e Thimo_2854 PF07650 KH domain Thimo_2854 PF00189 Ribosomal protein S3, C-terminal domain Thimo_2855 PF00237 Ribosomal protein L22p/L17e Thimo_2856 PF00203 Ribosomal protein S19 Thimo_2857 PF00181 Ribosomal Proteins L2, RNA binding domain Thimo_2857 PF03947 Ribosomal Proteins L2, C-terminal domain Thimo_2858 PF00276 Ribosomal protein L23 Thimo_2859 PF00573 Ribosomal protein L4/L1 family Thimo_2860 PF00297 Ribosomal protein L3 Thimo_2861 PF00338 Ribosomal protein S10p/S20e Thimo_2862 PF03144 Elongation factor Tu domain 2 Thimo_2862 PF03143 Elongation factor Tu C-terminal domain Thimo_2862 PF00009 Elongation factor Tu GTP binding domain Thimo_2863 PF00679 Elongation factor G C-terminus Thimo_2863 PF14492 Elongation Factor G, domain II Thimo_2863 PF03764 Elongation factor G, domain IV Thimo_2863 PF00009 Elongation factor Tu GTP binding domain Thimo_2863 PF03144 Elongation factor Tu domain 2 Thimo_2864 PF00177 Ribosomal protein S7p/S5e Thimo_2865 PF00164 Ribosomal protein S12/S23 Thimo_2866 PF04998 RNA polymerase Rpb1, domain 5 Thimo_2866 PF04983 RNA polymerase Rpb1, domain 3 Thimo_2866 PF00623 RNA polymerase Rpb1, domain 2 Thimo_2866 PF04997 RNA polymerase Rpb1, domain 1 Thimo_2866 PF05000 RNA polymerase Rpb1, domain 4 Thimo_2867 PF00562 RNA polymerase Rpb2, domain 6 Thimo_2867 PF04561 RNA polymerase Rpb2, domain 2 Thimo_2867 PF04563 RNA polymerase beta subunit Thimo_2867 PF10385 RNA polymerase beta subunit external 1 domain Thimo_2867 PF04565 RNA polymerase Rpb2, domain 3 Thimo_2867 PF04560 RNA polymerase Rpb2, domain 7 Thimo_2868 PF00542 Ribosomal protein L7/L12 C-terminal domain Thimo_2868 PF16320 Ribosomal protein L7/L12 dimerisation domain Thimo_2869 PF00466 Ribosomal protein L10 Thimo_2870 PF00687 Ribosomal protein L1p/L10e family Thimo_2871 PF03946 Ribosomal protein L11, N-terminal domain Thimo_2871 PF00298 Ribosomal protein L11, RNA binding domain Thimo_2872 PF02357 Transcription termination factor nusG Thimo_2872 PF00467 KOW motif Thimo_2873 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Thimo_2875 PF03143 Elongation factor Tu C-terminal domain Thimo_2875 PF03144 Elongation factor Tu domain 2 Thimo_2875 PF00009 Elongation factor Tu GTP binding domain Thimo_2879 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thimo_2879 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thimo_2879 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thimo_2883 PF00400 WD domain, G-beta repeat Thimo_2883 PF12894 Anaphase-promoting complex subunit 4 WD40 domain Thimo_2887 PF00400 WD domain, G-beta repeat Thimo_2887 PF12894 Anaphase-promoting complex subunit 4 WD40 domain Thimo_2888 PF00398 Ribosomal RNA adenine dimethylase Thimo_2889 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_2889 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thimo_2889 PF05362 Lon protease (S16) C-terminal proteolytic domain Thimo_2890 PF00258 Flavodoxin Thimo_2890 PF01613 Flavin reductase like domain Thimo_2891 PF00391 PEP-utilising enzyme, mobile domain Thimo_2891 PF00224 Pyruvate kinase, barrel domain Thimo_2891 PF02887 Pyruvate kinase, alpha/beta domain Thimo_2892 PF00561 alpha/beta hydrolase fold Thimo_2900 PF00403 Heavy-metal-associated domain Thimo_2903 PF01797 Transposase IS200 like Thimo_2907 PF00912 Transglycosylase Thimo_2915 PF02503 Polyphosphate kinase middle domain Thimo_2915 PF13090 Polyphosphate kinase C-terminal domain 2 Thimo_2915 PF13089 Polyphosphate kinase N-terminal domain Thimo_2915 PF17941 Polyphosphate kinase C-terminal domain 1 Thimo_2916 PF04337 Protein of unknown function, DUF480 Thimo_2917 PF02698 DUF218 domain Thimo_2920 PF01464 Transglycosylase SLT domain Thimo_2920 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thimo_2921 PF00563 EAL domain Thimo_2921 PF00990 Diguanylate cyclase, GGDEF domain Thimo_2921 PF03707 Bacterial signalling protein N terminal repeat Thimo_2930 PF00092 von Willebrand factor type A domain Thimo_2930 PF07584 Aerotolerance regulator N-terminal Thimo_2934 PF17863 AAA lid domain Thimo_2934 PF07726 ATPase family associated with various cellular activities (AAA) Thimo_2940 PF13488 Glycine zipper Thimo_2940 PF00691 OmpA family Thimo_2944 PF03466 LysR substrate binding domain Thimo_2944 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_2945 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thimo_2945 PF00361 Proton-conducting membrane transporter Thimo_2946 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Thimo_2947 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thimo_2947 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Thimo_2948 PF00101 Ribulose bisphosphate carboxylase, small chain Thimo_2958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_2958 PF03466 LysR substrate binding domain Thimo_2962 PF00664 ABC transporter transmembrane region Thimo_2962 PF00005 ABC transporter Thimo_2964 PF06804 NlpB/DapX lipoprotein Thimo_2965 PF00701 Dihydrodipicolinate synthetase family Thimo_2966 PF01842 ACT domain Thimo_2967 PF00578 AhpC/TSA family Thimo_2968 PF02562 PhoH-like protein Thimo_2968 PF13638 PIN domain Thimo_2969 PF00085 Thioredoxin Thimo_2969 PF01323 DSBA-like thioredoxin domain Thimo_2970 PF01242 6-pyruvoyl tetrahydropterin synthase Thimo_2971 PF06508 Queuosine biosynthesis protein QueC Thimo_2972 PF04321 RmlD substrate binding domain Thimo_2974 PF00436 Single-strand binding protein family Thimo_2975 PF07690 Major Facilitator Superfamily Thimo_2976 PF00034 Cytochrome c Thimo_2982 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thimo_2982 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thimo_2985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thimo_2985 PF00005 ABC transporter Thimo_2987 PF00556 Antenna complex alpha/beta subunit Thimo_2988 PF00556 Antenna complex alpha/beta subunit Thimo_2991 PF00556 Antenna complex alpha/beta subunit Thimo_2992 PF00556 Antenna complex alpha/beta subunit Thimo_2993 PF00556 Antenna complex alpha/beta subunit Thimo_2995 PF00556 Antenna complex alpha/beta subunit Thimo_2996 PF02276 Photosynthetic reaction centre cytochrome C subunit Thimo_2997 PF00124 Photosynthetic reaction centre protein Thimo_2998 PF00124 Photosynthetic reaction centre protein Thimo_3000 PF00556 Antenna complex alpha/beta subunit Thimo_3001 PF00556 Antenna complex alpha/beta subunit Thimo_3002 PF00556 Antenna complex alpha/beta subunit Thimo_3003 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3003 PF08369 Proto-chlorophyllide reductase 57 kD subunit Thimo_3004 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3005 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thimo_3007 PF00891 O-methyltransferase domain Thimo_3007 PF16864 Dimerisation domain Thimo_3008 PF00348 Polyprenyl synthetase Thimo_3009 PF01593 Flavin containing amine oxidoreductase Thimo_3012 PF01593 Flavin containing amine oxidoreductase Thimo_3013 PF12697 Alpha/beta hydrolase family Thimo_3014 PF17863 AAA lid domain Thimo_3015 PF01078 Magnesium chelatase, subunit ChlI Thimo_3015 PF17863 AAA lid domain Thimo_3016 PF12291 Protein of unknown function (DUF3623) Thimo_3018 PF03703 Bacterial PH domain Thimo_3019 PF03967 Photosynthetic reaction centre, H-chain N-terminal region Thimo_3019 PF05239 PRC-barrel domain Thimo_3020 PF03209 PUCC protein Thimo_3021 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus Thimo_3021 PF05175 Methyltransferase small domain Thimo_3022 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thimo_3023 PF11965 Domain of unknown function (DUF3479) Thimo_3023 PF02514 CobN/Magnesium Chelatase Thimo_3024 PF08369 Proto-chlorophyllide reductase 57 kD subunit Thimo_3024 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3025 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3026 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) Thimo_3028 PF08241 Methyltransferase domain Thimo_3029 PF00561 alpha/beta hydrolase fold Thimo_3030 PF00155 Aminotransferase class I and II Thimo_3031 PF06968 Biotin and Thiamin Synthesis associated domain Thimo_3031 PF04055 Radical SAM superfamily Thimo_3032 PF00849 RNA pseudouridylate synthase Thimo_3037 PF00561 alpha/beta hydrolase fold Thimo_3038 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thimo_3038 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thimo_3039 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thimo_3039 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thimo_3040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thimo_3040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thimo_3042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3042 PF00183 Hsp90 protein Thimo_3043 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thimo_3043 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thimo_3043 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thimo_3043 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thimo_3044 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_3044 PF01434 Peptidase family M41 Thimo_3044 PF17862 AAA+ lid domain Thimo_3044 PF06480 FtsH Extracellular Thimo_3046 PF00293 NUDIX domain Thimo_3047 PF00152 tRNA synthetases class II (D, K and N) Thimo_3047 PF02938 GAD domain Thimo_3047 PF01336 OB-fold nucleic acid binding domain Thimo_3050 PF01875 Memo-like protein Thimo_3053 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Thimo_3054 PF00483 Nucleotidyl transferase Thimo_3055 PF16363 GDP-mannose 4,6 dehydratase Thimo_3057 PF02397 Bacterial sugar transferase Thimo_3059 PF04101 Glycosyltransferase family 28 C-terminal domain Thimo_3059 PF03033 Glycosyltransferase family 28 N-terminal domain Thimo_3069 PF00535 Glycosyl transferase family 2 Thimo_3070 PF13439 Glycosyltransferase Family 4 Thimo_3070 PF00534 Glycosyl transferases group 1 Thimo_3071 PF00535 Glycosyl transferase family 2 Thimo_3084 PF00158 Sigma-54 interaction domain Thimo_3084 PF02954 Bacterial regulatory protein, Fis family Thimo_3084 PF00072 Response regulator receiver domain Thimo_3085 PF01464 Transglycosylase SLT domain Thimo_3097 PF00793 DAHP synthetase I family Thimo_3098 PF16124 RecQ zinc-binding Thimo_3098 PF09382 RQC domain Thimo_3098 PF00271 Helicase conserved C-terminal domain Thimo_3098 PF00270 DEAD/DEAH box helicase Thimo_3098 PF00570 HRDC domain Thimo_3101 PF07690 Major Facilitator Superfamily Thimo_3102 PF04381 Putative exonuclease, RdgC Thimo_3104 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Thimo_3105 PF12327 FtsZ family, C-terminal domain Thimo_3105 PF00091 Tubulin/FtsZ family, GTPase domain Thimo_3106 PF02491 SHS2 domain inserted in FTSA Thimo_3107 PF03799 Cell division protein FtsQ Thimo_3107 PF08478 POTRA domain, FtsQ-type Thimo_3108 PF01820 D-ala D-ala ligase N-terminus Thimo_3108 PF07478 D-ala D-ala ligase C-terminus Thimo_3109 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thimo_3109 PF01565 FAD binding domain Thimo_3110 PF08245 Mur ligase middle domain Thimo_3110 PF01225 Mur ligase family, catalytic domain Thimo_3110 PF02875 Mur ligase family, glutamate ligase domain Thimo_3111 PF03033 Glycosyltransferase family 28 N-terminal domain Thimo_3111 PF04101 Glycosyltransferase family 28 C-terminal domain Thimo_3112 PF01098 Cell cycle protein Thimo_3113 PF08245 Mur ligase middle domain Thimo_3113 PF02875 Mur ligase family, glutamate ligase domain Thimo_3114 PF00953 Glycosyl transferase family 4 Thimo_3114 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thimo_3115 PF08245 Mur ligase middle domain Thimo_3115 PF02875 Mur ligase family, glutamate ligase domain Thimo_3115 PF01225 Mur ligase family, catalytic domain Thimo_3116 PF08245 Mur ligase middle domain Thimo_3116 PF01225 Mur ligase family, catalytic domain Thimo_3116 PF02875 Mur ligase family, glutamate ligase domain Thimo_3117 PF03717 Penicillin-binding Protein dimerisation domain Thimo_3117 PF00905 Penicillin binding protein transpeptidase domain Thimo_3118 PF04999 Cell division protein FtsL Thimo_3119 PF01795 MraW methylase family Thimo_3120 PF02381 MraZ protein, putative antitoxin-like Thimo_3122 PF02654 Cobalamin-5-phosphate synthase Thimo_3123 PF00300 Histidine phosphatase superfamily (branch 1) Thimo_3124 PF07977 FabA-like domain Thimo_3125 PF00005 ABC transporter Thimo_3127 PF00899 ThiF family Thimo_3129 PF17827 PrmC N-terminal domain Thimo_3129 PF05175 Methyltransferase small domain Thimo_3130 PF03462 PCRF domain Thimo_3130 PF00472 RF-1 domain Thimo_3131 PF01488 Shikimate / quinate 5-dehydrogenase Thimo_3131 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Thimo_3131 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Thimo_3133 PF00288 GHMP kinases N terminal domain Thimo_3133 PF08544 GHMP kinases C terminal Thimo_3135 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thimo_3135 PF14572 Phosphoribosyl synthetase-associated domain Thimo_3136 PF01386 Ribosomal L25p family Thimo_3136 PF14693 Ribosomal protein TL5, C-terminal domain Thimo_3137 PF01195 Peptidyl-tRNA hydrolase Thimo_3138 PF16363 GDP-mannose 4,6 dehydratase Thimo_3141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3141 PF13426 PAS domain Thimo_3141 PF00672 HAMP domain Thimo_3141 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3142 PF00486 Transcriptional regulatory protein, C terminal Thimo_3142 PF00072 Response regulator receiver domain Thimo_3143 PF00529 HlyD membrane-fusion protein of T1SS Thimo_3143 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thimo_3144 PF00873 AcrB/AcrD/AcrF family Thimo_3145 PF02321 Outer membrane efflux protein Thimo_3148 PF05973 Phage derived protein Gp49-like (DUF891) Thimo_3151 PF00580 UvrD/REP helicase N-terminal domain Thimo_3151 PF13361 UvrD-like helicase C-terminal domain Thimo_3154 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thimo_3154 PF01926 50S ribosome-binding GTPase Thimo_3156 PF03006 Haemolysin-III related Thimo_3157 PF00005 ABC transporter Thimo_3160 PF00300 Histidine phosphatase superfamily (branch 1) Thimo_3161 PF00990 Diguanylate cyclase, GGDEF domain Thimo_3163 PF00857 Isochorismatase family Thimo_3164 PF00114 Pilin (bacterial filament) Thimo_3164 PF07963 Prokaryotic N-terminal methylation motif Thimo_3165 PF05567 Neisseria PilC beta-propeller domain Thimo_3171 PF11898 Domain of unknown function (DUF3418) Thimo_3171 PF04408 Helicase associated domain (HA2) Thimo_3171 PF00270 DEAD/DEAH box helicase Thimo_3171 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Thimo_3171 PF00271 Helicase conserved C-terminal domain Thimo_3172 PF07703 Alpha-2-macroglobulin bait region domain Thimo_3172 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Thimo_3172 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Thimo_3172 PF00207 Alpha-2-macroglobulin family Thimo_3172 PF01835 MG2 domain Thimo_3172 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Thimo_3172 PF17962 Bacterial macroglobulin domain 6 Thimo_3172 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Thimo_3173 PF00912 Transglycosylase Thimo_3173 PF00905 Penicillin binding protein transpeptidase domain Thimo_3173 PF06832 Penicillin-Binding Protein C-terminus Family Thimo_3180 PF08402 TOBE domain Thimo_3180 PF00005 ABC transporter Thimo_3181 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_3185 PF03544 Gram-negative bacterial TonB protein C-terminal Thimo_3186 PF02472 Biopolymer transport protein ExbD/TolR Thimo_3187 PF01618 MotA/TolQ/ExbB proton channel family Thimo_3189 PF07715 TonB-dependent Receptor Plug Domain Thimo_3189 PF00593 TonB dependent receptor Thimo_3191 PF01791 DeoC/LacD family aldolase Thimo_3193 PF01906 Putative heavy-metal-binding Thimo_3196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3196 PF08918 PhoQ Sensor Thimo_3197 PF00072 Response regulator receiver domain Thimo_3197 PF00486 Transcriptional regulatory protein, C terminal Thimo_3200 PF07486 Cell Wall Hydrolase Thimo_3200 PF01471 Putative peptidoglycan binding domain Thimo_3203 PF00361 Proton-conducting membrane transporter Thimo_3204 PF00146 NADH dehydrogenase Thimo_3206 PF00361 Proton-conducting membrane transporter Thimo_3207 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thimo_3208 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_3222 PF01850 PIN domain Thimo_3224 PF00176 SNF2 family N-terminal domain Thimo_3224 PF04434 SWIM zinc finger Thimo_3224 PF00271 Helicase conserved C-terminal domain Thimo_3227 PF05970 PIF1-like helicase Thimo_3230 PF00639 PPIC-type PPIASE domain Thimo_3231 PF04319 NifZ domain Thimo_3232 PF03206 Nitrogen fixation protein NifW Thimo_3234 PF00682 HMGL-like Thimo_3235 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thimo_3235 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_3236 PF00374 Nickel-dependent hydrogenase Thimo_3237 PF01292 Prokaryotic cytochrome b561 Thimo_3238 PF01750 Hydrogenase maturation protease Thimo_3240 PF02579 Dinitrogenase iron-molybdenum cofactor Thimo_3240 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal Thimo_3241 PF00037 4Fe-4S binding domain Thimo_3242 PF06988 NifT/FixU protein Thimo_3243 PF11844 Domain of unknown function (DUF3364) Thimo_3243 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3244 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3245 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thimo_3246 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) Thimo_3248 PF02579 Dinitrogenase iron-molybdenum cofactor Thimo_3248 PF04055 Radical SAM superfamily Thimo_3249 PF12838 4Fe-4S dicluster domain Thimo_3250 PF00753 Metallo-beta-lactamase superfamily Thimo_3250 PF00258 Flavodoxin Thimo_3251 PF00111 2Fe-2S iron-sulfur cluster binding domain Thimo_3252 PF00111 2Fe-2S iron-sulfur cluster binding domain Thimo_3253 PF04891 NifQ Thimo_3254 PF03747 ADP-ribosylglycohydrolase Thimo_3255 PF00563 EAL domain Thimo_3255 PF13426 PAS domain Thimo_3255 PF08448 PAS fold Thimo_3255 PF00990 Diguanylate cyclase, GGDEF domain Thimo_3255 PF08447 PAS fold Thimo_3255 PF05231 MASE1 Thimo_3259 PF01515 Phosphate acetyl/butaryl transferase Thimo_3259 PF03949 Malic enzyme, NAD binding domain Thimo_3259 PF00390 Malic enzyme, N-terminal domain Thimo_3262 PF00149 Calcineurin-like phosphoesterase Thimo_3263 PF04379 ApaG domain Thimo_3266 PF09312 SurA N-terminal domain Thimo_3266 PF00639 PPIC-type PPIASE domain Thimo_3267 PF03968 OstA-like protein Thimo_3267 PF04453 LPS transport system D Thimo_3268 PF02769 AIR synthase related protein, C-terminal domain Thimo_3268 PF00586 AIR synthase related protein, N-terminal domain Thimo_3269 PF01924 Hydrogenase formation hypA family Thimo_3270 PF01455 HupF/HypC family Thimo_3271 PF00374 Nickel-dependent hydrogenase Thimo_3272 PF05175 Methyltransferase small domain Thimo_3274 PF01678 Diaminopimelate epimerase Thimo_3275 PF04340 Protein of unknown function, DUF484 Thimo_3276 PF00589 Phage integrase family Thimo_3276 PF02899 Phage integrase, N-terminal SAM-like domain Thimo_3278 PF00227 Proteasome subunit Thimo_3279 PF00004 ATPase family associated with various cellular activities (AAA) Thimo_3279 PF07724 AAA domain (Cdc48 subfamily) Thimo_3280 PF13847 Methyltransferase domain Thimo_3283 PF00202 Aminotransferase class-III Thimo_3284 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thimo_3284 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thimo_3288 PF07690 Major Facilitator Superfamily Thimo_3289 PF11066 Protein of unknown function (DUF2867) Thimo_3289 PF13460 NAD(P)H-binding Thimo_3292 PF00106 short chain dehydrogenase Thimo_3295 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3295 PF00672 HAMP domain Thimo_3295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3296 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3296 PF00989 PAS fold Thimo_3296 PF11808 Phosphate regulon sensor protein PhoR Thimo_3297 PF00486 Transcriptional regulatory protein, C terminal Thimo_3297 PF00072 Response regulator receiver domain Thimo_3298 PF12706 Beta-lactamase superfamily domain Thimo_3299 PF00293 NUDIX domain Thimo_3300 PF02657 Fe-S metabolism associated domain Thimo_3301 PF01521 Iron-sulphur cluster biosynthesis Thimo_3302 PF04011 LemA family Thimo_3304 PF00563 EAL domain Thimo_3304 PF00990 Diguanylate cyclase, GGDEF domain Thimo_3304 PF08447 PAS fold Thimo_3304 PF08448 PAS fold Thimo_3310 PF12697 Alpha/beta hydrolase family Thimo_3311 PF00425 chorismate binding enzyme Thimo_3312 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thimo_3312 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thimo_3313 PF00378 Enoyl-CoA hydratase/isomerase Thimo_3314 PF01040 UbiA prenyltransferase family Thimo_3315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Thimo_3315 PF13378 Enolase C-terminal domain-like Thimo_3317 PF02446 4-alpha-glucanotransferase Thimo_3318 PF00483 Nucleotidyl transferase Thimo_3319 PF02806 Alpha amylase, C-terminal all-beta domain Thimo_3319 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Thimo_3319 PF00128 Alpha amylase, catalytic domain Thimo_3320 PF00313 'Cold-shock' DNA-binding domain Thimo_3321 PF01145 SPFH domain / Band 7 family Thimo_3321 PF16200 C-terminal region of band_7 Thimo_3323 PF02391 MoaE protein Thimo_3324 PF00425 chorismate binding enzyme Thimo_3324 PF04715 Anthranilate synthase component I, N terminal region Thimo_3326 PF00391 PEP-utilising enzyme, mobile domain Thimo_3326 PF02896 PEP-utilising enzyme, TIM barrel domain Thimo_3326 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thimo_3328 PF00133 tRNA synthetases class I (I, L, M and V) Thimo_3328 PF10458 Valyl tRNA synthetase tRNA binding arm Thimo_3328 PF08264 Anticodon-binding domain of tRNA Thimo_3329 PF13545 Crp-like helix-turn-helix domain Thimo_3329 PF00027 Cyclic nucleotide-binding domain Thimo_3331 PF04333 MlaA lipoprotein Thimo_3332 PF00929 Exonuclease Thimo_3333 PF00462 Glutaredoxin Thimo_3334 PF13537 Glutamine amidotransferase domain Thimo_3334 PF00733 Asparagine synthase Thimo_3337 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Thimo_3337 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Thimo_3339 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Thimo_3339 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Thimo_3340 PF00374 Nickel-dependent hydrogenase Thimo_3343 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Thimo_3343 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_3357 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thimo_3359 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thimo_3361 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thimo_3361 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Thimo_3361 PF13244 Domain of unknown function (DUF4040) Thimo_3361 PF00361 Proton-conducting membrane transporter Thimo_3362 PF03167 Uracil DNA glycosylase superfamily Thimo_3363 PF08502 LeuA allosteric (dimerisation) domain Thimo_3363 PF00682 HMGL-like Thimo_3364 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thimo_3364 PF03466 LysR substrate binding domain Thimo_3365 PF04358 DsrC like protein Thimo_3366 PF00478 IMP dehydrogenase / GMP reductase domain Thimo_3366 PF00571 CBS domain Thimo_3368 PF03063 Prismane/CO dehydrogenase family Thimo_3369 PF00027 Cyclic nucleotide-binding domain Thimo_3369 PF01734 Patatin-like phospholipase Thimo_3373 PF00483 Nucleotidyl transferase Thimo_3374 PF01676 Metalloenzyme superfamily Thimo_3374 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Thimo_3375 PF00303 Thymidylate synthase Thimo_3376 PF01618 MotA/TolQ/ExbB proton channel family Thimo_3377 PF02472 Biopolymer transport protein ExbD/TolR Thimo_3378 PF00005 ABC transporter Thimo_3378 PF00664 ABC transporter transmembrane region Thimo_3379 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Thimo_3380 PF03966 Trm112p-like protein Thimo_3381 PF02348 Cytidylyltransferase Thimo_3383 PF00999 Sodium/hydrogen exchanger family Thimo_3391 PF13411 MerR HTH family regulatory protein Thimo_3392 PF00403 Heavy-metal-associated domain Thimo_3393 PF00403 Heavy-metal-associated domain Thimo_3397 PF01384 Phosphate transporter family Thimo_3398 PF01743 Poly A polymerase head domain Thimo_3398 PF12627 Probable RNA and SrmB- binding site of polymerase A Thimo_3398 PF01966 HD domain Thimo_3402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3402 PF00672 HAMP domain Thimo_3402 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Thimo_3402 PF00072 Response regulator receiver domain Thimo_3402 PF01627 Hpt domain Thimo_3402 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3403 PF00072 Response regulator receiver domain Thimo_3403 PF00990 Diguanylate cyclase, GGDEF domain Thimo_3405 PF00155 Aminotransferase class I and II Thimo_3406 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_3406 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thimo_3407 PF02277 Phosphoribosyltransferase Thimo_3410 PF09957 Bacterial antitoxin of type II TA system, VapB Thimo_3413 PF01555 DNA methylase Thimo_3420 PF01435 Peptidase family M48 Thimo_3422 PF00732 GMC oxidoreductase Thimo_3422 PF05199 GMC oxidoreductase Thimo_3424 PF01734 Patatin-like phospholipase Thimo_3426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3426 PF00672 HAMP domain Thimo_3426 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3427 PF00486 Transcriptional regulatory protein, C terminal Thimo_3427 PF00072 Response regulator receiver domain Thimo_3430 PF17912 MalK OB fold domain Thimo_3430 PF00005 ABC transporter Thimo_3431 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_3432 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_3433 PF01547 Bacterial extracellular solute-binding protein Thimo_3436 PF00202 Aminotransferase class-III Thimo_3437 PF00534 Glycosyl transferases group 1 Thimo_3437 PF08323 Starch synthase catalytic domain Thimo_3438 PF00128 Alpha amylase, catalytic domain Thimo_3438 PF10438 Cyclo-malto-dextrinase C-terminal domain Thimo_3438 PF09087 Cyclomaltodextrinase, N-terminal Thimo_3440 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thimo_3440 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thimo_3442 PF03372 Endonuclease/Exonuclease/phosphatase family Thimo_3443 PF04055 Radical SAM superfamily Thimo_3443 PF00919 Uncharacterized protein family UPF0004 Thimo_3443 PF01938 TRAM domain Thimo_3445 PF01048 Phosphorylase superfamily Thimo_3451 PF12161 HsdM N-terminal domain Thimo_3451 PF02384 N-6 DNA Methylase Thimo_3454 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Thimo_3459 PF01381 Helix-turn-helix Thimo_3463 PF14437 MafB19-like deaminase Thimo_3465 PF03477 ATP cone domain Thimo_3465 PF13597 Anaerobic ribonucleoside-triphosphate reductase Thimo_3469 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Thimo_3469 PF03033 Glycosyltransferase family 28 N-terminal domain Thimo_3473 PF02384 N-6 DNA Methylase Thimo_3477 PF02743 Cache domain Thimo_3477 PF00672 HAMP domain Thimo_3477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thimo_3481 PF00873 AcrB/AcrD/AcrF family Thimo_3483 PF13617 YnbE-like lipoprotein Thimo_3492 PF00669 Bacterial flagellin N-terminal helical region Thimo_3493 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thimo_3493 PF00460 Flagella basal body rod protein Thimo_3494 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thimo_3494 PF10135 Rod binding protein Thimo_3495 PF02119 Flagellar P-ring protein Thimo_3496 PF02107 Flagellar L-ring protein Thimo_3497 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thimo_3497 PF00460 Flagella basal body rod protein Thimo_3498 PF00460 Flagella basal body rod protein Thimo_3498 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thimo_3499 PF00460 Flagella basal body rod protein Thimo_3499 PF07559 Flagellar basal body protein FlaE Thimo_3499 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thimo_3500 PF03963 Flagellar hook capping protein - N-terminal region Thimo_3500 PF13860 FlgD Ig-like domain Thimo_3500 PF13861 FlgD Tudor-like domain Thimo_3501 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thimo_3501 PF00460 Flagella basal body rod protein Thimo_3505 PF07722 Peptidase C26 Thimo_3510 PF12627 Probable RNA and SrmB- binding site of polymerase A Thimo_3510 PF12626 Polymerase A arginine-rich C-terminus Thimo_3510 PF01743 Poly A polymerase head domain Thimo_3511 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thimo_3512 PF02548 Ketopantoate hydroxymethyltransferase Thimo_3513 PF02569 Pantoate-beta-alanine ligase Thimo_3514 PF02261 Aspartate decarboxylase Thimo_3515 PF00534 Glycosyl transferases group 1 Thimo_3515 PF08323 Starch synthase catalytic domain Thimo_3516 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thimo_3516 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thimo_3517 PF00342 Phosphoglucose isomerase Thimo_3518 PF06798 PrkA serine protein kinase C-terminal domain Thimo_3518 PF08298 PrkA AAA domain Thimo_3519 PF04285 Protein of unknown function (DUF444) Thimo_3520 PF04293 SpoVR like protein Thimo_3521 PF03734 L,D-transpeptidase catalytic domain Thimo_3522 PF08443 RimK-like ATP-grasp domain Thimo_3522 PF18030 RimK PreATP-grasp domain Thimo_3524 PF01636 Phosphotransferase enzyme family Thimo_3527 PF00589 Phage integrase family Thimo_3527 PF13495 Phage integrase, N-terminal SAM-like domain Thimo_3542 PF01595 Cyclin M transmembrane N-terminal domain Thimo_3542 PF00571 CBS domain Thimo_3545 PF00141 Peroxidase Thimo_3549 PF01734 Patatin-like phospholipase Thimo_3549 PF11856 Protein of unknown function (DUF3376) Thimo_3550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_3552 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_3553 PF02571 Precorrin-6x reductase CbiJ/CobK Thimo_3554 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_3555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thimo_3556 PF02570 Precorrin-8X methylmutase Thimo_3557 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3557 PF00672 HAMP domain Thimo_3558 PF00486 Transcriptional regulatory protein, C terminal Thimo_3558 PF00072 Response regulator receiver domain Thimo_3562 PF00174 Oxidoreductase molybdopterin binding domain Thimo_3563 PF01292 Prokaryotic cytochrome b561 Thimo_3566 PF09924 Uncharacterised conserved protein (DUF2156) Thimo_3566 PF03706 Lysylphosphatidylglycerol synthase TM region Thimo_3568 PF01470 Pyroglutamyl peptidase Thimo_3573 PF00005 ABC transporter Thimo_3573 PF00664 ABC transporter transmembrane region Thimo_3589 PF13537 Glutamine amidotransferase domain Thimo_3589 PF00733 Asparagine synthase Thimo_3597 PF00753 Metallo-beta-lactamase superfamily Thimo_3597 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thimo_3598 PF00571 CBS domain Thimo_3598 PF00478 IMP dehydrogenase / GMP reductase domain Thimo_3599 PF02540 NAD synthase Thimo_3599 PF00958 GMP synthase C terminal domain Thimo_3599 PF00117 Glutamine amidotransferase class-I Thimo_3601 PF01370 NAD dependent epimerase/dehydratase family Thimo_3602 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thimo_3602 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thimo_3602 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thimo_3603 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thimo_3604 PF14489 QueF-like protein Thimo_3605 PF03884 DNA gyrase inhibitor YacG Thimo_3606 PF07072 Cell division protein Thimo_3607 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Thimo_3607 PF00591 Glycosyl transferase family, a/b domain Thimo_3607 PF02885 Glycosyl transferase family, helical bundle domain Thimo_3608 PF14572 Phosphoribosyl synthetase-associated domain Thimo_3608 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thimo_3609 PF01709 Transcriptional regulator Thimo_3610 PF02075 Crossover junction endodeoxyribonuclease RuvC Thimo_3611 PF07499 RuvA, C-terminal domain Thimo_3611 PF01330 RuvA N terminal domain Thimo_3612 PF03781 Sulfatase-modifying factor enzyme 1 Thimo_3614 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thimo_3614 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thimo_3614 PF00205 Thiamine pyrophosphate enzyme, central domain Thimo_3616 PF00011 Hsp20/alpha crystallin family Thimo_3617 PF00011 Hsp20/alpha crystallin family Thimo_3618 PF01208 Uroporphyrinogen decarboxylase (URO-D) Thimo_3619 PF00140 Sigma-70 factor, region 1.2 Thimo_3619 PF04545 Sigma-70, region 4 Thimo_3619 PF04542 Sigma-70 region 2 Thimo_3620 PF18075 FtsX extracellular domain Thimo_3621 PF00005 ABC transporter Thimo_3622 PF02881 SRP54-type protein, helical bundle domain Thimo_3622 PF00448 SRP54-type protein, GTPase domain Thimo_3623 PF05193 Peptidase M16 inactive domain Thimo_3623 PF00675 Insulinase (Peptidase family M16) Thimo_3624 PF05193 Peptidase M16 inactive domain Thimo_3626 PF01467 Cytidylyltransferase-like Thimo_3627 PF00037 4Fe-4S binding domain Thimo_3629 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Thimo_3629 PF06827 Zinc finger found in FPG and IleRS Thimo_3629 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Thimo_3631 PF00009 Elongation factor Tu GTP binding domain Thimo_3631 PF11987 Translation-initiation factor 2 Thimo_3631 PF04760 Translation initiation factor IF-2, N-terminal region Thimo_3634 PF00106 short chain dehydrogenase Thimo_3635 PF01209 ubiE/COQ5 methyltransferase family Thimo_3636 PF01569 PAP2 superfamily Thimo_3643 PF12838 4Fe-4S dicluster domain Thimo_3644 PF03270 Protein of unknown function, DUF269 Thimo_3645 PF02579 Dinitrogenase iron-molybdenum cofactor Thimo_3646 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3647 PF00148 Nitrogenase component 1 type Oxidoreductase Thimo_3650 PF00425 chorismate binding enzyme Thimo_3650 PF04715 Anthranilate synthase component I, N terminal region Thimo_3651 PF13419 Haloacid dehalogenase-like hydrolase Thimo_3652 PF00834 Ribulose-phosphate 3 epimerase family Thimo_3653 PF00248 Aldo/keto reductase family Thimo_3654 PF00156 Phosphoribosyl transferase domain Thimo_3657 PF00005 ABC transporter Thimo_3657 PF00571 CBS domain Thimo_3658 PF00528 Binding-protein-dependent transport system inner membrane component Thimo_3659 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Thimo_3661 PF02028 BCCT, betaine/carnitine/choline family transporter Thimo_3665 PF02810 SEC-C motif Thimo_3665 PF07517 SecA DEAD-like domain Thimo_3665 PF01043 SecA preprotein cross-linking domain Thimo_3665 PF07516 SecA Wing and Scaffold domain Thimo_3666 PF01960 ArgJ family Thimo_3667 PF00293 NUDIX domain Thimo_3668 PF01965 DJ-1/PfpI family Thimo_3669 PF03572 Peptidase family S41 Thimo_3669 PF13180 PDZ domain Thimo_3670 PF01551 Peptidase family M23 Thimo_3672 PF00581 Rhodanese-like domain Thimo_3673 PF02556 Preprotein translocase subunit SecB Thimo_3674 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thimo_3674 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thimo_3675 PF00588 SpoU rRNA Methylase family Thimo_3676 PF01180 Dihydroorotate dehydrogenase Thimo_3679 PF00158 Sigma-54 interaction domain Thimo_3679 PF00072 Response regulator receiver domain Thimo_3679 PF02954 Bacterial regulatory protein, Fis family Thimo_3680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thimo_3680 PF00989 PAS fold Thimo_3680 PF00512 His Kinase A (phospho-acceptor) domain Thimo_3682 PF00120 Glutamine synthetase, catalytic domain Thimo_3682 PF03951 Glutamine synthetase, beta-Grasp domain Thimo_3683 PF16916 Dimerisation domain of Zinc Transporter Thimo_3683 PF01545 Cation efflux family Thimo_3685 PF05746 DALR anticodon binding domain Thimo_3685 PF02092 Glycyl-tRNA synthetase beta subunit Thimo_3690 PF02342 TerD domain Thimo_3692 PF02342 TerD domain Thimo_3693 PF02342 TerD domain Thimo_3694 PF02342 TerD domain Thimo_3697 PF11202 Phosphoribosyl transferase (PRTase) Thimo_3697 PF15608 PELOTA RNA binding domain Thimo_3699 PF00483 Nucleotidyl transferase Thimo_3701 PF12631 MnmE helical domain Thimo_3701 PF01926 50S ribosome-binding GTPase Thimo_3701 PF10396 GTP-binding protein TrmE N-terminus Thimo_3702 PF14849 YidC periplasmic domain Thimo_3702 PF02096 60Kd inner membrane protein Thimo_3710 PF12544 Lysine-2,3-aminomutase Thimo_3710 PF04055 Radical SAM superfamily Thimo_3711 PF07478 D-ala D-ala ligase C-terminus Thimo_3713 PF00291 Pyridoxal-phosphate dependent enzyme Thimo_3714 PF00202 Aminotransferase class-III Thimo_3718 PF03050 Transposase IS66 family Thimo_3718 PF13005 zinc-finger binding domain of transposase IS66 Thimo_3718 PF13007 Transposase C of IS166 homeodomain Thimo_3718 PF13817 IS66 C-terminal element Thimo_3721 PF08401 Domain of unknown function (DUF1738) Thimo_3721 PF18818 Metallopeptidase superfamily domain Thimo_3721 PF13362 Toprim domain Thimo_3728 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Thimo_3730 PF03050 Transposase IS66 family Thimo_3730 PF13005 zinc-finger binding domain of transposase IS66 Thimo_3730 PF13007 Transposase C of IS166 homeodomain Thimo_3730 PF13817 IS66 C-terminal element Thimo_3733 PF04002 RadC-like JAB domain Thimo_3738 PF17762 HTH domain found in ParB protein Thimo_3738 PF02195 ParB-like nuclease domain Thimo_3739 PF13614 AAA domain Thimo_3743 PF04002 RadC-like JAB domain Thimo_3744 PF13635 Domain of unknown function (DUF4143) Thimo_3744 PF13173 AAA domain Thimo_3748 PF01051 Initiator Replication protein Thimo_3749 PF12833 Helix-turn-helix domain Thimo_3749 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Thimo_3753 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Thimo_3759 PF03524 Conjugal transfer protein Thimo_3760 PF03743 Bacterial conjugation TrbI-like protein Thimo_3761 PF00437 Type II/IV secretion system protein Thimo_3762 PF02534 Type IV secretory system Conjugative DNA transfer Thimo_3766 PF02899 Phage integrase, N-terminal SAM-like domain Thimo_3766 PF00589 Phage integrase family Thimo_3767 PF13614 AAA domain Thimo_3771 PF13005 zinc-finger binding domain of transposase IS66 Thimo_3771 PF13007 Transposase C of IS166 homeodomain Thimo_3771 PF13817 IS66 C-terminal element Thimo_3771 PF03050 Transposase IS66 family Thimo_3774 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase)