Thimo_0001 SM01234 Thimo_0001 Thimo_0003 SM00382 ATPases associated with a variety of cellular activities Thimo_0003 SM00760 Bacterial dnaA protein helix-turn-helix domain Thimo_0004 SM00480 DNA polymerase III beta subunit Thimo_0005 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0033 SM00966 SpoVT / AbrB like domain Thimo_0041 SM00382 ATPases associated with a variety of cellular activities Thimo_0044 SM00382 ATPases associated with a variety of cellular activities Thimo_0058 SM00464 Found in ATP-dependent protease La (LON) Thimo_0075 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thimo_0078 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0083 SM00842 Cell division protein FtsA Thimo_0087 SM00965 Secretin and TonB N terminus short domain Thimo_0093 SM00387 Histidine kinase-like ATPases Thimo_0093 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0094 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0094 SM00091 PAS domain Thimo_0094 SM00448 cheY-homologous receiver domain Thimo_0095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thimo_0098 SM00938 Nitrogen regulatory protein P-II Thimo_0101 SM00382 ATPases associated with a variety of cellular activities Thimo_0102 SM00382 ATPases associated with a variety of cellular activities Thimo_0105 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_0107 SM00052 Putative diguanylate phosphodiesterase Thimo_0107 SM00091 PAS domain Thimo_0107 SM00267 diguanylate cyclase Thimo_0112 SM00450 Rhodanese Homology Domain Thimo_0122 SM00852 Probable molybdopterin binding domain Thimo_0125 SM00014 Acid phosphatase homologues Thimo_0129 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_0133 SM01004 Delta-aminolevulinic acid dehydratase Thimo_0160 SM00450 Rhodanese Homology Domain Thimo_0160 SM00849 Metallo-beta-lactamase superfamily Thimo_0167 SM00327 von Willebrand factor (vWF) type A domain Thimo_0168 SM01321 Thimo_0168 Thimo_0176 SM00883 Chaperonin 10 Kd subunit Thimo_0183 SM00878 Biotin carboxylase C-terminal domain Thimo_0187 SM00798 AICARFT/IMPCHase bienzyme Thimo_0187 SM00851 MGS-like domain Thimo_0189 SM01209 Thimo_0189 Thimo_0189 SM01210 Thimo_0189 Thimo_0191 SM00849 Metallo-beta-lactamase superfamily Thimo_0193 SM00382 ATPases associated with a variety of cellular activities Thimo_0199 SM00530 Helix-turn-helix XRE-family like proteins Thimo_0204 SM00255 Toll - interleukin 1 - resistance Thimo_0216 SM00320 WD40 repeats Thimo_0218 SM00448 cheY-homologous receiver domain Thimo_0218 SM00862 Transcriptional regulatory protein, C terminal Thimo_0219 SM00387 Histidine kinase-like ATPases Thimo_0219 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0222 SM00248 ankyrin repeats Thimo_0224 SM00062 Bacterial periplasmic substrate-binding proteins Thimo_0226 SM00382 ATPases associated with a variety of cellular activities Thimo_0232 SM00900 Thimo_0232 Thimo_0237 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Thimo_0237 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Thimo_0242 SM00881 CoA binding domain Thimo_0267 SM00382 ATPases associated with a variety of cellular activities Thimo_0268 SM00382 ATPases associated with a variety of cellular activities Thimo_0273 SM00382 ATPases associated with a variety of cellular activities Thimo_0285 SM00382 ATPases associated with a variety of cellular activities Thimo_0285 SM00962 SRP54-type protein, GTPase domain Thimo_0291 SM00858 Thimo_0291 Thimo_0297 SM00851 MGS-like domain Thimo_0297 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thimo_0298 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Thimo_0301 SM00382 ATPases associated with a variety of cellular activities Thimo_0309 SM00966 SpoVT / AbrB like domain Thimo_0312 SM00382 ATPases associated with a variety of cellular activities Thimo_0328 SM01321 Thimo_0328 Thimo_0329 SM00840 Thimo_0329 Thimo_0334 SM00487 DEAD-like helicases superfamily Thimo_0334 SM00490 helicase superfamily c-terminal domain Thimo_0339 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_0339 SM00732 Likely ribonuclease with RNase H fold. Thimo_0346 SM00046 Diacylglycerol kinase catalytic domain (presumed) Thimo_0352 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0358 SM00382 ATPases associated with a variety of cellular activities Thimo_0359 SM00382 ATPases associated with a variety of cellular activities Thimo_0360 SM00901 Thimo_0360 Thimo_0374 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0374 SM00091 PAS domain Thimo_0374 SM00387 Histidine kinase-like ATPases Thimo_0377 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_0377 SM00382 ATPases associated with a variety of cellular activities Thimo_0381 SM00062 Bacterial periplasmic substrate-binding proteins Thimo_0381 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Thimo_0389 SM00886 Stress responsive A/B Barrel Domain Thimo_0392 SM00822 Thimo_0392 Thimo_0426 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0431 SM00382 ATPases associated with a variety of cellular activities Thimo_0431 SM00994 ClpX C4-type zinc finger Thimo_0431 SM01086 C-terminal, D2-small domain, of ClpB protein Thimo_0432 SM00382 ATPases associated with a variety of cellular activities Thimo_0432 SM00464 Found in ATP-dependent protease La (LON) Thimo_0433 SM00411 bacterial (prokaryotic) histone like domain Thimo_0439 SM00893 Electron transfer flavoprotein domain Thimo_0440 SM00893 Electron transfer flavoprotein domain Thimo_0452 SM00434 DNA Topoisomerase IV Thimo_0469 SM00422 helix_turn_helix, mercury resistance Thimo_0485 SM00347 helix_turn_helix multiple antibiotic resistance protein Thimo_0493 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0495 SM01018 B12 binding domain Thimo_0498 SM00028 Tetratricopeptide repeats Thimo_0510 SM00448 cheY-homologous receiver domain Thimo_0513 SM00382 ATPases associated with a variety of cellular activities Thimo_0513 SM00962 SRP54-type protein, GTPase domain Thimo_0513 SM00963 SRP54-type protein, helical bundle domain Thimo_0515 SM00052 Putative diguanylate phosphodiesterase Thimo_0515 SM00267 diguanylate cyclase Thimo_0526 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0527 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0530 SM00226 Low molecular weight phosphatase family Thimo_0531 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_0532 SM00363 S4 RNA-binding domain Thimo_0535 SM00257 Lysin motif Thimo_0540 SM00387 Histidine kinase-like ATPases Thimo_0540 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0540 SM00448 cheY-homologous receiver domain Thimo_0543 SM00460 Transglutaminase/protease-like homologues Thimo_0553 SM00400 zinc finger Thimo_0553 SM00493 Thimo_0553 Thimo_0553 SM00766 DNA primase DnaG DnaB-binding Thimo_0558 SM01207 Thimo_0558 Thimo_0559 SM00905 Dihydroneopterin aldolase Thimo_0590 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thimo_0591 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thimo_0604 SM00342 helix_turn_helix, arabinose operon control protein Thimo_0605 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Thimo_0605 SM00560 LamG-like jellyroll fold domain Thimo_0609 SM00327 von Willebrand factor (vWF) type A domain Thimo_0610 SM00220 Serine/Threonine protein kinases, catalytic domain Thimo_0616 SM00382 ATPases associated with a variety of cellular activities Thimo_0623 SM00052 Putative diguanylate phosphodiesterase Thimo_0623 SM00448 cheY-homologous receiver domain Thimo_0624 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0624 SM00091 PAS domain Thimo_0624 SM00387 Histidine kinase-like ATPases Thimo_0624 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0624 SM00448 cheY-homologous receiver domain Thimo_0625 SM00267 diguanylate cyclase Thimo_0636 SM00382 ATPases associated with a variety of cellular activities Thimo_0648 SM00382 ATPases associated with a variety of cellular activities Thimo_0649 SM00382 ATPases associated with a variety of cellular activities Thimo_0654 SM00671 Sel1-like repeats. Thimo_0655 SM00900 Thimo_0655 Thimo_0658 SM00460 Transglutaminase/protease-like homologues Thimo_0665 SM00387 Histidine kinase-like ATPases Thimo_0665 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0665 SM00448 cheY-homologous receiver domain Thimo_0667 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_0667 SM01091 Transporter associated domain Thimo_0670 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_0674 SM00387 Histidine kinase-like ATPases Thimo_0674 SM00433 TopoisomeraseII Thimo_0677 SM00487 DEAD-like helicases superfamily Thimo_0677 SM00490 helicase superfamily c-terminal domain Thimo_0680 SM00861 Transketolase, pyrimidine binding domain Thimo_0689 SM00382 ATPases associated with a variety of cellular activities Thimo_0690 SM00382 ATPases associated with a variety of cellular activities Thimo_0691 SM01001 AIR carboxylase Thimo_0694 SM00327 von Willebrand factor (vWF) type A domain Thimo_0695 SM00327 von Willebrand factor (vWF) type A domain Thimo_0696 SM00831 Cation transporter/ATPase, N-terminus Thimo_0700 SM00731 SprT homologues. Thimo_0702 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_0702 SM00322 K homology RNA-binding domain Thimo_0706 SM01387 Thimo_0706 Thimo_0707 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_0707 SM00322 K homology RNA-binding domain Thimo_0709 SM00344 helix_turn_helix ASNC type Thimo_0710 SM00917 LeuA allosteric (dimerisation) domain Thimo_0713 SM00981 Thimo_0713 Thimo_0714 SM00947 Carbonic anhydrase Thimo_0717 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thimo_0726 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_0728 SM00935 Outer membrane protein (OmpH-like) Thimo_0747 SM01152 Thimo_0747 Thimo_0753 SM00220 Serine/Threonine protein kinases, catalytic domain Thimo_0755 SM00072 Guanylate kinase homologues. Thimo_0756 SM01409 Thimo_0756 Thimo_0757 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thimo_0757 SM00954 Region found in RelA / SpoT proteins Thimo_0761 SM00052 Putative diguanylate phosphodiesterase Thimo_0761 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_0761 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0761 SM00091 PAS domain Thimo_0761 SM00267 diguanylate cyclase Thimo_0762 SM00849 Metallo-beta-lactamase superfamily Thimo_0763 SM00861 Transketolase, pyrimidine binding domain Thimo_0766 SM00961 Ribulose bisphosphate carboxylase, small chain Thimo_0767 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0767 SM00091 PAS domain Thimo_0767 SM00267 diguanylate cyclase Thimo_0768 SM00861 Transketolase, pyrimidine binding domain Thimo_0784 SM00382 ATPases associated with a variety of cellular activities Thimo_0802 SM01321 Thimo_0802 Thimo_0813 SM00723 Adhesion-associated domain present in MUC4 and other proteins Thimo_0821 SM00671 Sel1-like repeats. Thimo_0822 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_0822 SM00387 Histidine kinase-like ATPases Thimo_0822 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0823 SM00382 ATPases associated with a variety of cellular activities Thimo_0823 SM00448 cheY-homologous receiver domain Thimo_0831 SM00704 CDGSH-type zinc finger. Function unknown. Thimo_0834 SM00091 PAS domain Thimo_0834 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_0834 SM00387 Histidine kinase-like ATPases Thimo_0834 SM00388 His Kinase A (phosphoacceptor) domain Thimo_0834 SM00448 cheY-homologous receiver domain Thimo_0835 SM01117 Thimo_0835 Thimo_0838 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_0853 SM00267 diguanylate cyclase Thimo_0854 SM00267 diguanylate cyclase Thimo_0868 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_0873 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0873 SM00091 PAS domain Thimo_0892 SM00382 ATPases associated with a variety of cellular activities Thimo_0901 SM00382 ATPases associated with a variety of cellular activities Thimo_0903 SM00327 von Willebrand factor (vWF) type A domain Thimo_0905 SM00220 Serine/Threonine protein kinases, catalytic domain Thimo_0914 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thimo_0916 SM00771 ZipA, C-terminal domain (FtsZ-binding) Thimo_0917 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thimo_0917 SM00292 breast cancer carboxy-terminal domain Thimo_0917 SM00532 Ligase N family Thimo_0919 SM01057 Eukaryotic-type carbonic anhydrase Thimo_0920 SM00642 Alpha-amylase domain Thimo_0928 SM00382 ATPases associated with a variety of cellular activities Thimo_0935 SM00977 TilS substrate C-terminal domain Thimo_0944 SM00382 ATPases associated with a variety of cellular activities Thimo_0953 SM00052 Putative diguanylate phosphodiesterase Thimo_0953 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_0953 SM00091 PAS domain Thimo_0953 SM00267 diguanylate cyclase Thimo_0954 SM01248 Thimo_0954 Thimo_0955 SM00382 ATPases associated with a variety of cellular activities Thimo_0957 SM01321 Thimo_0957 Thimo_0964 SM00900 Thimo_0964 Thimo_0966 SM00834 Putative regulatory protein Thimo_0970 SM00481 DNA polymerase alpha chain like domain Thimo_1013 SM00829 Enoylreductase Thimo_1034 SM00363 S4 RNA-binding domain Thimo_1044 SM00487 DEAD-like helicases superfamily Thimo_1044 SM00490 helicase superfamily c-terminal domain Thimo_1061 SM01323 Thimo_1061 Thimo_1103 SM00642 Alpha-amylase domain Thimo_1106 SM00382 ATPases associated with a variety of cellular activities Thimo_1110 SM00098 Alkaline phosphatase homologues Thimo_1113 SM00028 Tetratricopeptide repeats Thimo_1114 SM00327 von Willebrand factor (vWF) type A domain Thimo_1115 SM00327 von Willebrand factor (vWF) type A domain Thimo_1120 SM00255 Toll - interleukin 1 - resistance Thimo_1128 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_1140 SM00904 Riboflavin kinase Thimo_1143 SM00052 Putative diguanylate phosphodiesterase Thimo_1143 SM00267 diguanylate cyclase Thimo_1155 SM00382 ATPases associated with a variety of cellular activities Thimo_1159 SM00382 ATPases associated with a variety of cellular activities Thimo_1160 SM01228 Thimo_1160 Thimo_1163 SM00470 ParB-like nuclease domain Thimo_1171 SM00382 ATPases associated with a variety of cellular activities Thimo_1178 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_1178 SM00419 helix_turn_helix, cAMP Regulatory protein Thimo_1195 SM01011 Aminopeptidase P, N-terminal domain Thimo_1230 SM00671 Sel1-like repeats. Thimo_1231 SM00267 diguanylate cyclase Thimo_1242 SM00382 ATPases associated with a variety of cellular activities Thimo_1242 SM00448 cheY-homologous receiver domain Thimo_1243 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_1243 SM00387 Histidine kinase-like ATPases Thimo_1243 SM00388 His Kinase A (phosphoacceptor) domain Thimo_1248 SM00257 Lysin motif Thimo_1251 SM00357 Cold shock protein domain Thimo_1254 SM00382 ATPases associated with a variety of cellular activities Thimo_1256 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Thimo_1256 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Thimo_1256 SM00493 Thimo_1256 Thimo_1268 SM00900 Thimo_1268 Thimo_1273 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_1273 SM00091 PAS domain Thimo_1273 SM00387 Histidine kinase-like ATPases Thimo_1274 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_1274 SM00382 ATPases associated with a variety of cellular activities Thimo_1292 SM00479 Thimo_1292 Thimo_1293 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_1297 SM00917 LeuA allosteric (dimerisation) domain Thimo_1299 SM00434 DNA Topoisomerase IV Thimo_1302 SM00830 Chorismate mutase type II Thimo_1317 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thimo_1318 SM00479 Thimo_1318 Thimo_1319 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_1319 SM00419 helix_turn_helix, cAMP Regulatory protein Thimo_1323 SM01192 Thimo_1323 Thimo_1323 SM01193 Thimo_1323 Thimo_1328 SM00463 Small MutS-related domain Thimo_1346 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_1350 SM00028 Tetratricopeptide repeats Thimo_1358 SM00382 ATPases associated with a variety of cellular activities Thimo_1385 SM00880 Thimo_1385 Thimo_1386 SM00448 cheY-homologous receiver domain Thimo_1387 SM00387 Histidine kinase-like ATPases Thimo_1387 SM00388 His Kinase A (phosphoacceptor) domain Thimo_1388 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thimo_1388 SM00481 DNA polymerase alpha chain like domain Thimo_1388 SM00483 DNA polymerase X family Thimo_1389 SM00855 Phosphoglycerate mutase family Thimo_1399 SM00382 ATPases associated with a variety of cellular activities Thimo_1399 SM00448 cheY-homologous receiver domain Thimo_1400 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_1402 SM00388 His Kinase A (phosphoacceptor) domain Thimo_1404 SM00890 Domain of unknown function Thimo_1408 SM00382 ATPases associated with a variety of cellular activities Thimo_1429 SM00530 Helix-turn-helix XRE-family like proteins Thimo_1432 SM00382 ATPases associated with a variety of cellular activities Thimo_1436 SM00822 Thimo_1436 Thimo_1436 SM00825 Beta-ketoacyl synthase Thimo_1436 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thimo_1437 SM00825 Beta-ketoacyl synthase Thimo_1437 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thimo_1450 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_1451 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_1457 SM00014 Acid phosphatase homologues Thimo_1459 SM00563 Phosphate acyltransferases Thimo_1463 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_1472 SM00248 ankyrin repeats Thimo_1477 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_1482 SM00331 Sigma factor PP2C-like phosphatases Thimo_1482 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thimo_1506 SM01103 Thimo_1506 Thimo_1513 SM00382 ATPases associated with a variety of cellular activities Thimo_1514 SM01005 Alanine racemase, C-terminal domain Thimo_1515 SM00382 ATPases associated with a variety of cellular activities Thimo_1519 SM00155 Phospholipase D. Active site motifs. Thimo_1528 SM00460 Transglutaminase/protease-like homologues Thimo_1530 SM00360 RNA recognition motif Thimo_1533 SM00360 RNA recognition motif Thimo_1536 SM00382 ATPases associated with a variety of cellular activities Thimo_1537 SM00240 Forkhead associated domain Thimo_1537 SM00382 ATPases associated with a variety of cellular activities Thimo_1538 SM00220 Serine/Threonine protein kinases, catalytic domain Thimo_1539 SM00327 von Willebrand factor (vWF) type A domain Thimo_1544 SM00062 Bacterial periplasmic substrate-binding proteins Thimo_1547 SM00861 Transketolase, pyrimidine binding domain Thimo_1561 SM00954 Region found in RelA / SpoT proteins Thimo_1565 SM00382 ATPases associated with a variety of cellular activities Thimo_1570 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_1570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_1570 SM00091 PAS domain Thimo_1570 SM00138 Methyltransferase, chemotaxis proteins Thimo_1570 SM00387 Histidine kinase-like ATPases Thimo_1570 SM00388 His Kinase A (phosphoacceptor) domain Thimo_1570 SM00448 cheY-homologous receiver domain Thimo_1580 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Thimo_1583 SM00867 YceI-like domain Thimo_1588 SM00450 Rhodanese Homology Domain Thimo_1591 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Thimo_1591 SM01232 Thimo_1591 Thimo_1592 SM00382 ATPases associated with a variety of cellular activities Thimo_1592 SM00487 DEAD-like helicases superfamily Thimo_1592 SM00490 helicase superfamily c-terminal domain Thimo_1605 SM00487 DEAD-like helicases superfamily Thimo_1605 SM00490 helicase superfamily c-terminal domain Thimo_1605 SM00847 Helicase associated domain (HA2) Add an annotation Thimo_1607 SM00267 diguanylate cyclase Thimo_1607 SM00448 cheY-homologous receiver domain Thimo_1619 SM00481 DNA polymerase alpha chain like domain Thimo_1624 SM01321 Thimo_1624 Thimo_1627 SM00880 Thimo_1627 Thimo_1646 SM00822 Thimo_1646 Thimo_1658 SM00363 S4 RNA-binding domain Thimo_1673 SM00382 ATPases associated with a variety of cellular activities Thimo_1683 SM00852 Probable molybdopterin binding domain Thimo_1684 SM00852 Probable molybdopterin binding domain Thimo_1686 SM00838 Elongation factor G C-terminus Thimo_1686 SM00889 Elongation factor G, domain IV Thimo_1690 SM00448 cheY-homologous receiver domain Thimo_1690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thimo_1691 SM00387 Histidine kinase-like ATPases Thimo_1691 SM00388 His Kinase A (phosphoacceptor) domain Thimo_1691 SM00448 cheY-homologous receiver domain Thimo_1692 SM00257 Lysin motif Thimo_1692 SM00646 Thimo_1692 Thimo_1696 SM01118 Thimo_1696 Thimo_1699 SM00861 Transketolase, pyrimidine binding domain Thimo_1711 SM00028 Tetratricopeptide repeats Thimo_1712 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Thimo_1718 SM00530 Helix-turn-helix XRE-family like proteins Thimo_1722 SM00642 Alpha-amylase domain Thimo_1723 SM00387 Histidine kinase-like ATPases Thimo_1724 SM00448 cheY-homologous receiver domain Thimo_1724 SM00862 Transcriptional regulatory protein, C terminal Thimo_1729 SM00054 EF-hand, calcium binding motif Thimo_1730 SM00028 Tetratricopeptide repeats Thimo_1731 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_1737 SM00644 Thimo_1737 Thimo_1740 SM00836 DALR anticodon binding domain Thimo_1740 SM01016 Arginyl tRNA synthetase N terminal dom Thimo_1742 SM00829 Enoylreductase Thimo_1747 SM00382 ATPases associated with a variety of cellular activities Thimo_1752 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Thimo_1762 SM00382 ATPases associated with a variety of cellular activities Thimo_1779 SM00487 DEAD-like helicases superfamily Thimo_1779 SM00490 helicase superfamily c-terminal domain Thimo_1786 SM00387 Histidine kinase-like ATPases Thimo_1786 SM00433 TopoisomeraseII Thimo_1796 SM00899 Thimo_1796 Thimo_1797 SM00899 Thimo_1797 Thimo_1805 SM00479 Thimo_1805 Thimo_1808 SM00478 endonuclease III Thimo_1808 SM00525 Thimo_1808 Thimo_1810 SM00881 CoA binding domain Thimo_1812 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thimo_1813 SM00226 Low molecular weight phosphatase family Thimo_1819 SM00487 DEAD-like helicases superfamily Thimo_1819 SM00490 helicase superfamily c-terminal domain Thimo_1826 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_1827 SM00838 Elongation factor G C-terminus Thimo_1830 SM00358 Double-stranded RNA binding motif Thimo_1830 SM00535 Ribonuclease III family Thimo_1834 SM00478 endonuclease III Thimo_1836 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_1843 SM00831 Cation transporter/ATPase, N-terminus Thimo_1855 SM00530 Helix-turn-helix XRE-family like proteins Thimo_1859 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_1878 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_1879 SM00411 bacterial (prokaryotic) histone like domain Thimo_1883 SM00422 helix_turn_helix, mercury resistance Thimo_1886 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thimo_1888 SM00564 beta-propeller repeat Thimo_1891 SM00530 Helix-turn-helix XRE-family like proteins Thimo_1892 SM00028 Tetratricopeptide repeats Thimo_1894 SM00562 Thimo_1894 Thimo_1900 SM00867 YceI-like domain Thimo_1914 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_1922 SM00487 DEAD-like helicases superfamily Thimo_1922 SM00490 helicase superfamily c-terminal domain Thimo_1923 SM00360 RNA recognition motif Thimo_1926 SM01091 Transporter associated domain Thimo_1927 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_1928 SM00450 Rhodanese Homology Domain Thimo_1937 SM01049 Thimo_1937 Thimo_1941 SM00271 DnaJ molecular chaperone homology domain Thimo_1942 SM00382 ATPases associated with a variety of cellular activities Thimo_1953 SM00955 Thimo_1953 Thimo_1962 SM00935 Outer membrane protein (OmpH-like) Thimo_1964 SM00849 Metallo-beta-lactamase superfamily Thimo_1967 SM00878 Biotin carboxylase C-terminal domain Thimo_1970 SM00450 Rhodanese Homology Domain Thimo_1974 SM00671 Sel1-like repeats. Thimo_1975 SM01350 Thimo_1975 Thimo_1984 SM00487 DEAD-like helicases superfamily Thimo_1995 SM00382 ATPases associated with a variety of cellular activities Thimo_2003 SM00493 Thimo_2003 Thimo_2007 SM00382 ATPases associated with a variety of cellular activities Thimo_2008 SM00052 Putative diguanylate phosphodiesterase Thimo_2008 SM00091 PAS domain Thimo_2008 SM00267 diguanylate cyclase Thimo_2011 SM00382 ATPases associated with a variety of cellular activities Thimo_2016 SM00052 Putative diguanylate phosphodiesterase Thimo_2016 SM00267 diguanylate cyclase Thimo_2019 SM00487 DEAD-like helicases superfamily Thimo_2019 SM00490 helicase superfamily c-terminal domain Thimo_2026 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thimo_2037 SM00478 endonuclease III Thimo_2044 SM00382 ATPases associated with a variety of cellular activities Thimo_2055 SM00052 Putative diguanylate phosphodiesterase Thimo_2055 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thimo_2055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_2055 SM00091 PAS domain Thimo_2055 SM00267 diguanylate cyclase Thimo_2058 SM00155 Phospholipase D. Active site motifs. Thimo_2062 SM00448 cheY-homologous receiver domain Thimo_2062 SM00862 Transcriptional regulatory protein, C terminal Thimo_2063 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_2063 SM00387 Histidine kinase-like ATPases Thimo_2063 SM00388 His Kinase A (phosphoacceptor) domain Thimo_2077 SM00363 S4 RNA-binding domain Thimo_2082 SM00357 Cold shock protein domain Thimo_2082 SM00382 ATPases associated with a variety of cellular activities Thimo_2082 SM00959 Rho termination factor, N-terminal domain Thimo_2084 SM00487 DEAD-like helicases superfamily Thimo_2084 SM00490 helicase superfamily c-terminal domain Thimo_2091 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_2092 SM00382 ATPases associated with a variety of cellular activities Thimo_2092 SM01086 C-terminal, D2-small domain, of ClpB protein Thimo_2094 SM00357 Cold shock protein domain Thimo_2099 SM00487 DEAD-like helicases superfamily Thimo_2099 SM00491 Thimo_2099 Thimo_2103 SM00382 ATPases associated with a variety of cellular activities Thimo_2109 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thimo_2109 SM00534 ATPase domain of DNA mismatch repair MUTS family Thimo_2113 SM01209 Thimo_2113 Thimo_2115 SM00448 cheY-homologous receiver domain Thimo_2115 SM00862 Transcriptional regulatory protein, C terminal Thimo_2116 SM00046 Diacylglycerol kinase catalytic domain (presumed) Thimo_2126 SM00248 ankyrin repeats Thimo_2133 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_2133 SM00924 MgtE intracellular N domain Thimo_2134 SM00487 DEAD-like helicases superfamily Thimo_2134 SM00490 helicase superfamily c-terminal domain Thimo_2142 SM00382 ATPases associated with a variety of cellular activities Thimo_2145 SM00387 Histidine kinase-like ATPases Thimo_2145 SM00388 His Kinase A (phosphoacceptor) domain Thimo_2146 SM00448 cheY-homologous receiver domain Thimo_2146 SM00862 Transcriptional regulatory protein, C terminal Thimo_2149 SM00327 von Willebrand factor (vWF) type A domain Thimo_2155 SM00382 ATPases associated with a variety of cellular activities Thimo_2156 SM00382 ATPases associated with a variety of cellular activities Thimo_2165 SM00448 cheY-homologous receiver domain Thimo_2166 SM00382 ATPases associated with a variety of cellular activities Thimo_2170 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Thimo_2171 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_2175 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thimo_2176 SM00861 Transketolase, pyrimidine binding domain Thimo_2179 SM00996 S-adenosyl-L-homocysteine hydrolase Thimo_2179 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thimo_2182 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_2182 SM00245 tail specific protease Thimo_2186 SM00363 S4 RNA-binding domain Thimo_2188 SM00938 Nitrogen regulatory protein P-II Thimo_2190 SM00387 Histidine kinase-like ATPases Thimo_2190 SM00388 His Kinase A (phosphoacceptor) domain Thimo_2191 SM00382 ATPases associated with a variety of cellular activities Thimo_2191 SM00448 cheY-homologous receiver domain Thimo_2194 SM00530 Helix-turn-helix XRE-family like proteins Thimo_2209 SM00938 Nitrogen regulatory protein P-II Thimo_2215 SM00382 ATPases associated with a variety of cellular activities Thimo_2222 SM00841 Elongation factor P, C-terminal Thimo_2222 SM01185 Thimo_2222 Thimo_2224 SM00052 Putative diguanylate phosphodiesterase Thimo_2224 SM00267 diguanylate cyclase Thimo_2245 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_2245 SM00245 tail specific protease Thimo_2255 SM00382 ATPases associated with a variety of cellular activities Thimo_2255 SM01086 C-terminal, D2-small domain, of ClpB protein Thimo_2260 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Thimo_2264 SM00382 ATPases associated with a variety of cellular activities Thimo_2289 SM00481 DNA polymerase alpha chain like domain Thimo_2292 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thimo_2297 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_2299 SM00822 Thimo_2299 Thimo_2305 SM00220 Serine/Threonine protein kinases, catalytic domain Thimo_2310 SM00954 Region found in RelA / SpoT proteins Thimo_2323 SM00091 PAS domain Thimo_2323 SM00387 Histidine kinase-like ATPases Thimo_2323 SM00388 His Kinase A (phosphoacceptor) domain Thimo_2324 SM00421 helix_turn_helix, Lux Regulon Thimo_2324 SM00448 cheY-homologous receiver domain Thimo_2331 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thimo_2332 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_2332 SM00357 Cold shock protein domain Thimo_2332 SM00955 Thimo_2332 Thimo_2334 SM00387 Histidine kinase-like ATPases Thimo_2335 SM00421 helix_turn_helix, Lux Regulon Thimo_2335 SM00448 cheY-homologous receiver domain Thimo_2336 SM00450 Rhodanese Homology Domain Thimo_2341 SM00460 Transglutaminase/protease-like homologues Thimo_2343 SM00642 Alpha-amylase domain Thimo_2351 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thimo_2352 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thimo_2360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_2360 SM00387 Histidine kinase-like ATPases Thimo_2360 SM00388 His Kinase A (phosphoacceptor) domain Thimo_2361 SM00448 cheY-homologous receiver domain Thimo_2361 SM00862 Transcriptional regulatory protein, C terminal Thimo_2365 SM00487 DEAD-like helicases superfamily Thimo_2365 SM00490 helicase superfamily c-terminal domain Thimo_2365 SM00982 Thimo_2365 Thimo_2365 SM01058 CarD-like/TRCF domain Thimo_2367 SM00450 Rhodanese Homology Domain Thimo_2378 SM00825 Beta-ketoacyl synthase Thimo_2379 SM00823 Phosphopantetheine attachment site Thimo_2380 SM00822 Thimo_2380 Thimo_2381 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thimo_2386 SM00788 Adenylosuccinate synthetase Thimo_2389 SM00244 prohibitin homologues Thimo_2390 SM00244 prohibitin homologues Thimo_2394 SM00853 MutL C terminal dimerisation domain Thimo_2394 SM01340 Thimo_2394 Thimo_2397 SM00487 DEAD-like helicases superfamily Thimo_2397 SM00490 helicase superfamily c-terminal domain Thimo_2398 SM00507 HNH nucleases Thimo_2400 SM00855 Phosphoglycerate mutase family Thimo_2401 SM00287 Bacterial SH3 domain homologues Thimo_2428 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thimo_2430 SM00382 ATPases associated with a variety of cellular activities Thimo_2444 SM00382 ATPases associated with a variety of cellular activities Thimo_2446 SM00382 ATPases associated with a variety of cellular activities Thimo_2446 SM00843 Thimo_2446 Thimo_2452 SM01211 Thimo_2452 Thimo_2454 SM00769 Water Stress and Hypersensitive response Thimo_2461 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_2462 SM00091 PAS domain Thimo_2462 SM00138 Methyltransferase, chemotaxis proteins Thimo_2464 SM00091 PAS domain Thimo_2465 SM00091 PAS domain Thimo_2465 SM00387 Histidine kinase-like ATPases Thimo_2465 SM00388 His Kinase A (phosphoacceptor) domain Thimo_2466 SM00421 helix_turn_helix, Lux Regulon Thimo_2466 SM00448 cheY-homologous receiver domain Thimo_2468 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_2468 SM00419 helix_turn_helix, cAMP Regulatory protein Thimo_2482 SM00749 bacterial OsmY and nodulation domain Thimo_2488 SM01068 Putative carbohydrate binding domain Thimo_2489 SM00091 PAS domain Thimo_2489 SM00138 Methyltransferase, chemotaxis proteins Thimo_2490 SM00052 Putative diguanylate phosphodiesterase Thimo_2490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_2490 SM00091 PAS domain Thimo_2490 SM00267 diguanylate cyclase Thimo_2501 SM00833 Cobalamin synthesis protein cobW C-terminal domain Thimo_2507 SM00382 ATPases associated with a variety of cellular activities Thimo_2511 SM00382 ATPases associated with a variety of cellular activities Thimo_2515 SM00833 Cobalamin synthesis protein cobW C-terminal domain Thimo_2521 SM00382 ATPases associated with a variety of cellular activities Thimo_2526 SM00382 ATPases associated with a variety of cellular activities Thimo_2530 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_2530 SM00924 MgtE intracellular N domain Thimo_2535 SM00271 DnaJ molecular chaperone homology domain Thimo_2548 SM00382 ATPases associated with a variety of cellular activities Thimo_2554 SM00732 Likely ribonuclease with RNase H fold. Thimo_2559 SM00271 DnaJ molecular chaperone homology domain Thimo_2574 SM01321 Thimo_2574 Thimo_2582 SM00382 ATPases associated with a variety of cellular activities Thimo_2591 SM00342 helix_turn_helix, arabinose operon control protein Thimo_2592 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Thimo_2592 SM00474 3'-5' exonuclease Thimo_2592 SM00475 5'-3' exonuclease Thimo_2592 SM00482 DNA polymerase A domain Thimo_2593 SM00421 helix_turn_helix, Lux Regulon Thimo_2593 SM00448 cheY-homologous receiver domain Thimo_2595 SM00091 PAS domain Thimo_2600 SM00316 Ribosomal protein S1-like RNA-binding domain Thimo_2608 SM00506 Appr-1"-p processing enzyme Thimo_2610 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_2610 SM00419 helix_turn_helix, cAMP Regulatory protein Thimo_2617 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thimo_2617 SM00465 GIY-YIG type nucleases (URI domain) Thimo_2618 SM00421 helix_turn_helix, Lux Regulon Thimo_2618 SM00448 cheY-homologous receiver domain Thimo_2639 SM00450 Rhodanese Homology Domain Thimo_2653 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thimo_2654 SM01329 Thimo_2654 Thimo_2659 SM01321 Thimo_2659 Thimo_2663 SM00271 DnaJ molecular chaperone homology domain Thimo_2680 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thimo_2680 SM00895 Thimo_2680 Thimo_2693 SM00267 diguanylate cyclase Thimo_2698 SM00460 Transglutaminase/protease-like homologues Thimo_2700 SM00642 Alpha-amylase domain Thimo_2701 SM00507 HNH nucleases Thimo_2721 SM00487 DEAD-like helicases superfamily Thimo_2721 SM00490 helicase superfamily c-terminal domain Thimo_2735 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_2736 SM00382 ATPases associated with a variety of cellular activities Thimo_2755 SM00382 ATPases associated with a variety of cellular activities Thimo_2756 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_2760 SM00382 ATPases associated with a variety of cellular activities Thimo_2770 SM00091 PAS domain Thimo_2777 SM00936 Penicillin-binding protein 5, C-terminal domain Thimo_2787 SM00845 GatB domain Thimo_2790 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_2791 SM00989 Thimo_2791 Thimo_2796 SM00838 Elongation factor G C-terminus Thimo_2796 SM00889 Elongation factor G, domain IV Thimo_2798 SM00347 helix_turn_helix multiple antibiotic resistance protein Thimo_2807 SM00382 ATPases associated with a variety of cellular activities Thimo_2813 SM00342 helix_turn_helix, arabinose operon control protein Thimo_2815 SM00052 Putative diguanylate phosphodiesterase Thimo_2815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_2815 SM00091 PAS domain Thimo_2815 SM00267 diguanylate cyclase Thimo_2816 SM00091 PAS domain Thimo_2816 SM00138 Methyltransferase, chemotaxis proteins Thimo_2817 SM00267 diguanylate cyclase Thimo_2820 SM00382 ATPases associated with a variety of cellular activities Thimo_2821 SM00422 helix_turn_helix, mercury resistance Thimo_2822 SM00411 bacterial (prokaryotic) histone like domain Thimo_2823 SM00873 B3/4 domain Thimo_2823 SM00874 tRNA synthetase B5 domain Thimo_2823 SM00896 Ferredoxin-fold anticodon binding domain Thimo_2828 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thimo_2831 SM00829 Enoylreductase Thimo_2834 SM00662 RNA polymerases D Thimo_2835 SM00363 S4 RNA-binding domain Thimo_2835 SM01390 Thimo_2835 Thimo_2849 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thimo_2850 SM01374 Thimo_2850 Thimo_2854 SM00322 K homology RNA-binding domain Thimo_2857 SM01382 Thimo_2857 Thimo_2857 SM01383 Thimo_2857 Thimo_2861 SM01403 Thimo_2861 Thimo_2863 SM00838 Elongation factor G C-terminus Thimo_2863 SM00889 Elongation factor G, domain IV Thimo_2866 SM00663 RNA polymerase I subunit A N-terminus Thimo_2871 SM00649 Ribosomal protein L11/L12 Thimo_2872 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thimo_2872 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thimo_2879 SM00984 UDP binding domain Thimo_2885 SM01321 Thimo_2885 Thimo_2888 SM00650 Ribosomal RNA adenine dimethylases Thimo_2889 SM00382 ATPases associated with a variety of cellular activities Thimo_2889 SM00464 Found in ATP-dependent protease La (LON) Thimo_2890 SM00903 Flavin reductase like domain Thimo_2903 SM01321 Thimo_2903 Thimo_2908 SM00563 Phosphate acyltransferases Thimo_2920 SM00062 Bacterial periplasmic substrate-binding proteins Thimo_2921 SM00052 Putative diguanylate phosphodiesterase Thimo_2921 SM00091 PAS domain Thimo_2921 SM00267 diguanylate cyclase Thimo_2930 SM00028 Tetratricopeptide repeats Thimo_2930 SM00327 von Willebrand factor (vWF) type A domain Thimo_2931 SM00327 von Willebrand factor (vWF) type A domain Thimo_2948 SM00961 Ribulose bisphosphate carboxylase, small chain Thimo_2953 SM00877 Thimo_2953 Thimo_2954 SM00877 Thimo_2954 Thimo_2959 SM00877 Thimo_2959 Thimo_2962 SM00382 ATPases associated with a variety of cellular activities Thimo_2965 SM01130 Thimo_2965 Thimo_2968 SM00670 Large family of predicted nucleotide-binding domains Thimo_2985 SM00382 ATPases associated with a variety of cellular activities Thimo_3014 SM00327 von Willebrand factor (vWF) type A domain Thimo_3015 SM00382 ATPases associated with a variety of cellular activities Thimo_3031 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_3031 SM00876 Biotin and Thiamin Synthesis associated domain Thimo_3039 SM01350 Thimo_3039 Thimo_3040 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Thimo_3040 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Thimo_3042 SM00387 Histidine kinase-like ATPases Thimo_3044 SM00382 ATPases associated with a variety of cellular activities Thimo_3048 SM00834 Putative regulatory protein Thimo_3084 SM00382 ATPases associated with a variety of cellular activities Thimo_3087 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Thimo_3089 SM00028 Tetratricopeptide repeats Thimo_3092 SM00028 Tetratricopeptide repeats Thimo_3094 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Thimo_3098 SM00341 Helicase and RNase D C-terminal Thimo_3098 SM00487 DEAD-like helicases superfamily Thimo_3098 SM00490 helicase superfamily c-terminal domain Thimo_3098 SM00956 Thimo_3098 Thimo_3105 SM00864 Tubulin/FtsZ family, GTPase domain Thimo_3105 SM00865 Tubulin/FtsZ family, C-terminal domain Thimo_3106 SM00842 Cell division protein FtsA Thimo_3123 SM00855 Phosphoglycerate mutase family Thimo_3125 SM00382 ATPases associated with a variety of cellular activities Thimo_3130 SM00937 Thimo_3130 Thimo_3132 SM00028 Tetratricopeptide repeats Thimo_3135 SM01400 Thimo_3135 Thimo_3141 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_3141 SM00387 Histidine kinase-like ATPases Thimo_3141 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3142 SM00448 cheY-homologous receiver domain Thimo_3142 SM00862 Transcriptional regulatory protein, C terminal Thimo_3146 SM00342 helix_turn_helix, arabinose operon control protein Thimo_3147 SM00530 Helix-turn-helix XRE-family like proteins Thimo_3157 SM00382 ATPases associated with a variety of cellular activities Thimo_3160 SM00855 Phosphoglycerate mutase family Thimo_3161 SM00267 diguanylate cyclase Thimo_3171 SM00382 ATPases associated with a variety of cellular activities Thimo_3171 SM00487 DEAD-like helicases superfamily Thimo_3171 SM00490 helicase superfamily c-terminal domain Thimo_3171 SM00847 Helicase associated domain (HA2) Add an annotation Thimo_3172 SM00223 APPLE domain Thimo_3172 SM01359 Thimo_3172 Thimo_3172 SM01360 Thimo_3172 Thimo_3175 SM01321 Thimo_3175 Thimo_3180 SM00382 ATPases associated with a variety of cellular activities Thimo_3191 SM01133 Thimo_3191 Thimo_3196 SM00387 Histidine kinase-like ATPases Thimo_3197 SM00448 cheY-homologous receiver domain Thimo_3197 SM00862 Transcriptional regulatory protein, C terminal Thimo_3201 SM00318 Staphylococcal nuclease homologues Thimo_3202 SM00530 Helix-turn-helix XRE-family like proteins Thimo_3220 SM00530 Helix-turn-helix XRE-family like proteins Thimo_3224 SM00487 DEAD-like helicases superfamily Thimo_3227 SM00341 Helicase and RNase D C-terminal Thimo_3227 SM00382 ATPases associated with a variety of cellular activities Thimo_3250 SM00849 Metallo-beta-lactamase superfamily Thimo_3255 SM00267 diguanylate cyclase Thimo_3259 SM00919 Malic enzyme, NAD binding domain Thimo_3259 SM01274 Thimo_3259 Thimo_3273 SM00028 Tetratricopeptide repeats Thimo_3279 SM00382 ATPases associated with a variety of cellular activities Thimo_3279 SM01086 C-terminal, D2-small domain, of ClpB protein Thimo_3290 SM00986 Uracil DNA glycosylase superfamily Thimo_3290 SM00987 UreE urease accessory protein, C-terminal domain Thimo_3295 SM00387 Histidine kinase-like ATPases Thimo_3295 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3296 SM00091 PAS domain Thimo_3296 SM00387 Histidine kinase-like ATPases Thimo_3296 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3297 SM00448 cheY-homologous receiver domain Thimo_3297 SM00862 Transcriptional regulatory protein, C terminal Thimo_3298 SM00849 Metallo-beta-lactamase superfamily Thimo_3304 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_3304 SM00091 PAS domain Thimo_3304 SM00267 diguanylate cyclase Thimo_3315 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Thimo_3319 SM00642 Alpha-amylase domain Thimo_3320 SM00357 Cold shock protein domain Thimo_3321 SM00244 prohibitin homologues Thimo_3329 SM00419 helix_turn_helix, cAMP Regulatory protein Thimo_3332 SM00479 Thimo_3332 Thimo_3346 SM00327 von Willebrand factor (vWF) type A domain Thimo_3362 SM00986 Uracil DNA glycosylase superfamily Thimo_3362 SM00987 UreE urease accessory protein, C-terminal domain Thimo_3363 SM00917 LeuA allosteric (dimerisation) domain Thimo_3366 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_3369 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_3369 SM00419 helix_turn_helix, cAMP Regulatory protein Thimo_3370 SM00052 Putative diguanylate phosphodiesterase Thimo_3378 SM00382 ATPases associated with a variety of cellular activities Thimo_3391 SM00422 helix_turn_helix, mercury resistance Thimo_3398 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thimo_3402 SM00073 Histidine Phosphotransfer domain Thimo_3402 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thimo_3402 SM00091 PAS domain Thimo_3402 SM00387 Histidine kinase-like ATPases Thimo_3402 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3402 SM00448 cheY-homologous receiver domain Thimo_3403 SM00267 diguanylate cyclase Thimo_3426 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_3426 SM00387 Histidine kinase-like ATPases Thimo_3426 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3427 SM00448 cheY-homologous receiver domain Thimo_3427 SM00862 Transcriptional regulatory protein, C terminal Thimo_3430 SM00382 ATPases associated with a variety of cellular activities Thimo_3438 SM00642 Alpha-amylase domain Thimo_3443 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_3447 SM00953 Thimo_3447 Thimo_3455 SM00530 Helix-turn-helix XRE-family like proteins Thimo_3461 SM00487 DEAD-like helicases superfamily Thimo_3471 SM00028 Tetratricopeptide repeats Thimo_3475 SM00953 Thimo_3475 Thimo_3491 SM00287 Bacterial SH3 domain homologues Thimo_3494 SM00047 Lysozyme subfamily 2 Thimo_3518 SM00763 PrkA AAA domain Thimo_3557 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thimo_3557 SM00387 Histidine kinase-like ATPases Thimo_3557 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3558 SM00448 cheY-homologous receiver domain Thimo_3558 SM00862 Transcriptional regulatory protein, C terminal Thimo_3560 SM00855 Phosphoglycerate mutase family Thimo_3573 SM00382 ATPases associated with a variety of cellular activities Thimo_3587 SM00729 Elongator protein 3, MiaB family, Radical SAM Thimo_3596 SM01034 Sensors of blue-light using FAD Thimo_3597 SM00849 Metallo-beta-lactamase superfamily Thimo_3598 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_3598 SM01240 Thimo_3598 Thimo_3602 SM00984 UDP binding domain Thimo_3607 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Thimo_3608 SM01400 Thimo_3608 Thimo_3611 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thimo_3621 SM00382 ATPases associated with a variety of cellular activities Thimo_3622 SM00382 ATPases associated with a variety of cellular activities Thimo_3622 SM00962 SRP54-type protein, GTPase domain Thimo_3622 SM00963 SRP54-type protein, helical bundle domain Thimo_3629 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Thimo_3629 SM01232 Thimo_3629 Thimo_3631 SM00849 Metallo-beta-lactamase superfamily Thimo_3636 SM00014 Acid phosphatase homologues Thimo_3640 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thimo_3657 SM00382 ATPases associated with a variety of cellular activities Thimo_3662 SM00479 Thimo_3662 Thimo_3663 SM00100 Cyclic nucleotide-monophosphate binding domain Thimo_3663 SM00116 Domain in cystathionine beta-synthase and other proteins. Thimo_3665 SM00957 SecA DEAD-like domain Thimo_3665 SM00958 SecA preprotein cross-linking domain Thimo_3669 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thimo_3669 SM00245 tail specific protease Thimo_3671 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thimo_3672 SM00450 Rhodanese Homology Domain Thimo_3679 SM00382 ATPases associated with a variety of cellular activities Thimo_3679 SM00448 cheY-homologous receiver domain Thimo_3680 SM00387 Histidine kinase-like ATPases Thimo_3680 SM00388 His Kinase A (phosphoacceptor) domain Thimo_3682 SM01230 Thimo_3682 Thimo_3685 SM00836 DALR anticodon binding domain Thimo_3687 SM00563 Phosphate acyltransferases Thimo_3738 SM00470 ParB-like nuclease domain Thimo_3744 SM00382 ATPases associated with a variety of cellular activities Thimo_3749 SM00342 helix_turn_helix, arabinose operon control protein Thimo_3765 SM00567 E-Z type HEAT repeats Thimo_3768 SM00479 Thimo_3768